Query 000823
Match_columns 1267
No_of_seqs 683 out of 4070
Neff 5.7
Searched_HMMs 46136
Date Tue Apr 2 00:07:55 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 9.5E-68 2.1E-72 613.2 41.2 559 420-1255 182-791 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 1.1E-60 2.3E-65 563.6 34.2 405 676-1238 265-681 (693)
3 KOG0737 AAA+-type ATPase [Post 100.0 2.2E-56 4.7E-61 500.9 29.5 380 843-1258 4-386 (386)
4 TIGR01243 CDC48 AAA family ATP 100.0 4E-52 8.7E-57 523.7 43.2 538 423-1254 173-731 (733)
5 KOG0736 Peroxisome assembly fa 100.0 6.8E-50 1.5E-54 474.3 39.4 388 784-1242 550-943 (953)
6 KOG0738 AAA+-type ATPase [Post 100.0 3.1E-46 6.8E-51 417.9 25.0 284 928-1254 205-490 (491)
7 COG0464 SpoVK ATPases of the A 100.0 1.9E-44 4.1E-49 436.1 37.0 455 631-1236 19-488 (494)
8 COG1222 RPT1 ATP-dependent 26S 100.0 4.3E-45 9.4E-50 407.6 25.4 249 928-1235 144-396 (406)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 5E-44 1.1E-48 416.1 21.0 299 929-1260 184-522 (802)
10 KOG0739 AAA+-type ATPase [Post 100.0 6.6E-42 1.4E-46 371.8 18.0 298 923-1256 121-439 (439)
11 KOG0735 AAA+-type ATPase [Post 100.0 1.1E-39 2.3E-44 384.4 32.7 439 632-1193 433-893 (952)
12 KOG0741 AAA+-type ATPase [Post 100.0 7.9E-41 1.7E-45 383.9 21.5 432 632-1157 258-722 (744)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 4.1E-36 8.8E-41 359.9 37.6 411 676-1252 67-484 (489)
14 COG0542 clpA ATP-binding subun 100.0 1.4E-37 3.1E-42 380.9 22.8 382 676-1120 247-707 (786)
15 KOG0734 AAA+-type ATPase conta 100.0 4.9E-37 1.1E-41 353.1 21.2 271 925-1256 294-566 (752)
16 KOG0740 AAA+-type ATPase [Post 100.0 8.6E-36 1.9E-40 345.8 18.7 280 929-1256 147-427 (428)
17 KOG0727 26S proteasome regulat 100.0 1.6E-34 3.4E-39 308.4 21.9 248 926-1232 146-397 (408)
18 KOG0652 26S proteasome regulat 100.0 1E-34 2.2E-39 311.0 19.9 245 929-1232 165-413 (424)
19 KOG0728 26S proteasome regulat 100.0 2.9E-34 6.3E-39 306.1 21.3 249 929-1236 141-393 (404)
20 KOG0726 26S proteasome regulat 100.0 9.6E-35 2.1E-39 315.2 15.5 246 930-1234 180-429 (440)
21 COG1223 Predicted ATPase (AAA+ 100.0 5.3E-34 1.1E-38 306.1 19.9 244 931-1236 117-360 (368)
22 KOG0731 AAA+-type ATPase conta 100.0 1.8E-33 4E-38 342.4 23.9 251 927-1237 303-559 (774)
23 PTZ00454 26S protease regulato 100.0 4E-33 8.8E-38 327.7 26.0 248 928-1234 138-389 (398)
24 PRK03992 proteasome-activating 100.0 3.2E-32 7E-37 320.3 25.8 251 929-1238 125-379 (389)
25 KOG0729 26S proteasome regulat 100.0 6.8E-33 1.5E-37 297.7 16.5 250 929-1237 171-424 (435)
26 KOG0730 AAA+-type ATPase [Post 100.0 7.4E-33 1.6E-37 328.3 17.8 263 931-1260 181-445 (693)
27 TIGR02639 ClpA ATP-dependent C 100.0 3.8E-31 8.2E-36 333.4 32.0 357 674-1120 260-664 (731)
28 PTZ00361 26 proteosome regulat 100.0 2.8E-31 6.2E-36 314.2 23.9 247 929-1234 177-427 (438)
29 TIGR01241 FtsH_fam ATP-depende 100.0 4.1E-31 8.9E-36 320.1 25.6 271 926-1256 46-320 (495)
30 KOG0732 AAA+-type ATPase conta 100.0 1.2E-32 2.5E-37 342.3 10.2 415 617-1120 288-728 (1080)
31 COG0465 HflB ATP-dependent Zn 100.0 2.2E-31 4.8E-36 320.0 20.5 252 929-1240 144-399 (596)
32 PRK11034 clpA ATP-dependent Cl 100.0 1.1E-30 2.4E-35 326.6 26.8 399 630-1120 207-668 (758)
33 TIGR03345 VI_ClpV1 type VI sec 100.0 1.8E-29 3.8E-34 320.9 33.6 380 676-1120 267-782 (852)
34 CHL00095 clpC Clp protease ATP 100.0 6.5E-29 1.4E-33 316.5 32.9 380 676-1120 259-734 (821)
35 TIGR01242 26Sp45 26S proteasom 100.0 2.2E-29 4.8E-34 294.1 24.8 245 928-1231 115-363 (364)
36 TIGR01243 CDC48 AAA family ATP 100.0 2.9E-29 6.3E-34 316.9 23.7 288 930-1259 173-463 (733)
37 TIGR03689 pup_AAA proteasome A 100.0 1.3E-28 2.9E-33 295.2 25.9 300 928-1258 175-504 (512)
38 PRK10865 protein disaggregatio 100.0 4.2E-28 9.2E-33 309.1 30.8 364 690-1120 270-781 (857)
39 TIGR03346 chaperone_ClpB ATP-d 100.0 6.6E-28 1.4E-32 308.1 32.6 374 675-1120 252-778 (852)
40 KOG0651 26S proteasome regulat 100.0 1.5E-29 3.2E-34 278.2 13.7 244 930-1232 127-374 (388)
41 CHL00176 ftsH cell division pr 100.0 1.4E-28 3E-33 303.2 23.7 246 928-1233 176-425 (638)
42 PRK10733 hflB ATP-dependent me 100.0 8.6E-28 1.9E-32 298.6 24.7 251 928-1238 145-399 (644)
43 KOG0732 AAA+-type ATPase conta 100.0 6.7E-28 1.4E-32 300.2 19.0 266 929-1238 259-532 (1080)
44 CHL00206 ycf2 Ycf2; Provisiona 99.9 4.9E-27 1.1E-31 301.6 21.2 177 967-1150 1627-1852(2281)
45 KOG0741 AAA+-type ATPase [Post 99.9 5.3E-27 1.1E-31 270.7 11.2 263 932-1238 216-497 (744)
46 PLN00020 ribulose bisphosphate 99.9 4E-25 8.7E-30 251.8 20.4 168 967-1138 145-330 (413)
47 KOG0737 AAA+-type ATPase [Post 99.9 3.4E-25 7.3E-30 250.2 18.3 270 408-896 72-362 (386)
48 COG1222 RPT1 ATP-dependent 26S 99.9 9.3E-24 2E-28 237.2 11.6 236 421-894 144-393 (406)
49 KOG0736 Peroxisome assembly fa 99.9 4.5E-22 9.7E-27 238.5 16.8 249 971-1258 432-681 (953)
50 KOG0735 AAA+-type ATPase [Post 99.8 4.8E-20 1E-24 219.3 13.9 261 935-1259 408-677 (952)
51 KOG1051 Chaperone HSP104 and r 99.8 2.9E-19 6.2E-24 223.0 20.4 332 689-1084 278-710 (898)
52 CHL00181 cbbX CbbX; Provisiona 99.8 8.6E-19 1.9E-23 199.0 20.2 178 935-1123 23-214 (287)
53 KOG0738 AAA+-type ATPase [Post 99.8 2.4E-19 5.2E-24 202.7 15.0 249 421-894 205-470 (491)
54 KOG0742 AAA+-type ATPase [Post 99.8 2.2E-18 4.7E-23 195.1 20.8 213 933-1156 353-593 (630)
55 TIGR02881 spore_V_K stage V sp 99.8 2.2E-18 4.7E-23 193.0 16.8 179 933-1123 4-196 (261)
56 TIGR02880 cbbX_cfxQ probable R 99.8 5.8E-18 1.3E-22 192.1 19.8 176 936-1122 23-212 (284)
57 KOG0744 AAA+-type ATPase [Post 99.8 9.4E-19 2E-23 194.1 11.9 190 929-1120 136-342 (423)
58 PF00004 AAA: ATPase family as 99.8 1.8E-18 3.9E-23 171.1 11.4 130 973-1104 1-132 (132)
59 KOG0734 AAA+-type ATPase conta 99.7 2.1E-17 4.5E-22 192.2 13.7 240 413-891 289-539 (752)
60 CHL00195 ycf46 Ycf46; Provisio 99.7 3.2E-17 7E-22 197.6 15.7 225 403-846 206-439 (489)
61 PTZ00454 26S protease regulato 99.7 5.4E-17 1.2E-21 191.7 15.7 237 420-894 137-387 (398)
62 KOG0739 AAA+-type ATPase [Post 99.7 3.2E-17 7E-22 180.0 12.6 134 662-846 201-345 (439)
63 PRK03992 proteasome-activating 99.7 8E-17 1.7E-21 190.3 15.7 237 421-895 124-374 (389)
64 KOG0740 AAA+-type ATPase [Post 99.7 4.5E-17 9.8E-22 190.4 12.5 245 424-894 149-405 (428)
65 COG0464 SpoVK ATPases of the A 99.7 3.3E-16 7.2E-21 190.4 19.9 247 954-1258 3-251 (494)
66 KOG0743 AAA+-type ATPase [Post 99.7 1.3E-15 2.7E-20 177.3 17.8 206 932-1148 198-413 (457)
67 PF05496 RuvB_N: Holliday junc 99.7 3.5E-16 7.7E-21 169.5 11.2 191 932-1145 21-219 (233)
68 PTZ00361 26 proteosome regulat 99.7 6.5E-16 1.4E-20 184.0 14.0 151 674-894 262-425 (438)
69 COG2256 MGS1 ATPase related to 99.6 1.8E-15 4E-20 173.3 16.9 182 932-1157 21-219 (436)
70 KOG0728 26S proteasome regulat 99.6 5.8E-16 1.3E-20 166.7 11.1 151 674-894 226-389 (404)
71 TIGR02639 ClpA ATP-dependent C 99.6 3.9E-15 8.3E-20 188.9 20.0 185 933-1141 180-386 (731)
72 PRK00080 ruvB Holliday junctio 99.6 2.2E-14 4.7E-19 166.0 23.9 191 932-1145 22-220 (328)
73 CHL00206 ycf2 Ycf2; Provisiona 99.6 1.4E-15 3.1E-20 197.6 15.3 158 668-893 1712-1877(2281)
74 TIGR01241 FtsH_fam ATP-depende 99.6 1.2E-15 2.6E-20 185.6 13.7 237 418-893 45-295 (495)
75 TIGR00635 ruvB Holliday juncti 99.6 1.8E-14 4E-19 164.3 20.8 186 933-1140 2-195 (305)
76 TIGR00763 lon ATP-dependent pr 99.6 1.1E-14 2.4E-19 185.7 20.4 171 936-1118 321-505 (775)
77 COG1223 Predicted ATPase (AAA+ 99.6 5.3E-15 1.2E-19 160.5 14.7 148 673-891 195-353 (368)
78 KOG0731 AAA+-type ATPase conta 99.6 3.5E-15 7.6E-20 183.6 13.7 237 417-891 300-551 (774)
79 KOG0727 26S proteasome regulat 99.6 1.9E-15 4E-20 163.0 9.1 235 420-891 147-394 (408)
80 PLN00020 ribulose bisphosphate 99.6 1E-13 2.2E-18 159.3 21.4 102 666-812 187-313 (413)
81 COG0466 Lon ATP-dependent Lon 99.6 3.4E-14 7.4E-19 171.8 18.3 172 935-1118 323-508 (782)
82 TIGR03689 pup_AAA proteasome A 99.6 2.2E-14 4.7E-19 173.3 16.8 131 664-846 263-405 (512)
83 COG2255 RuvB Holliday junction 99.6 4.8E-14 1E-18 155.6 17.1 203 932-1157 23-233 (332)
84 KOG0726 26S proteasome regulat 99.6 9.4E-16 2E-20 168.2 3.2 188 632-893 221-426 (440)
85 PRK12323 DNA polymerase III su 99.6 6.6E-14 1.4E-18 170.7 18.9 181 932-1149 13-227 (700)
86 CHL00176 ftsH cell division pr 99.6 1.8E-14 3.9E-19 178.9 14.4 237 417-892 172-422 (638)
87 PRK07003 DNA polymerase III su 99.6 7.5E-14 1.6E-18 172.0 19.0 181 932-1149 13-222 (830)
88 PRK11034 clpA ATP-dependent Cl 99.6 6.8E-14 1.5E-18 176.5 19.1 172 933-1128 184-372 (758)
89 KOG2004 Mitochondrial ATP-depe 99.5 1.2E-13 2.7E-18 165.9 19.3 172 935-1119 411-597 (906)
90 TIGR01242 26Sp45 26S proteasom 99.5 4E-14 8.7E-19 166.1 14.4 147 676-892 203-362 (364)
91 PRK14956 DNA polymerase III su 99.5 1.6E-13 3.5E-18 163.9 18.8 180 932-1148 15-223 (484)
92 TIGR02902 spore_lonB ATP-depen 99.5 2.4E-13 5.2E-18 166.7 18.8 192 932-1145 62-302 (531)
93 PRK14962 DNA polymerase III su 99.5 7.6E-13 1.7E-17 159.8 21.9 171 932-1138 11-210 (472)
94 KOG0615 Serine/threonine prote 99.5 2E-14 4.3E-19 164.5 7.5 111 120-230 39-160 (475)
95 CHL00095 clpC Clp protease ATP 99.5 1.1E-12 2.4E-17 168.4 24.0 185 933-1142 177-383 (821)
96 PRK14960 DNA polymerase III su 99.5 7.3E-13 1.6E-17 162.1 20.9 177 932-1145 12-217 (702)
97 PRK10733 hflB ATP-dependent me 99.5 1.2E-13 2.6E-18 172.8 14.3 148 676-893 232-392 (644)
98 PRK14961 DNA polymerase III su 99.5 1.7E-12 3.7E-17 152.4 22.4 177 932-1145 13-218 (363)
99 KOG2028 ATPase related to the 99.5 9.2E-13 2E-17 148.5 18.7 174 932-1145 135-335 (554)
100 PRK14958 DNA polymerase III su 99.5 9.9E-13 2.2E-17 160.2 20.3 180 932-1148 13-221 (509)
101 PRK05342 clpX ATP-dependent pr 99.5 5.9E-13 1.3E-17 158.1 17.7 179 937-1115 73-322 (412)
102 TIGR03345 VI_ClpV1 type VI sec 99.5 3.3E-13 7.2E-18 173.0 16.7 184 933-1141 185-391 (852)
103 PRK14949 DNA polymerase III su 99.5 9.7E-13 2.1E-17 165.0 19.6 180 932-1148 13-221 (944)
104 PLN03025 replication factor C 99.5 1.2E-12 2.6E-17 151.0 18.8 181 932-1153 10-203 (319)
105 PRK00149 dnaA chromosomal repl 99.5 8.3E-13 1.8E-17 159.2 18.1 168 971-1152 149-327 (450)
106 PRK10865 protein disaggregatio 99.5 4.8E-13 1E-17 172.0 16.4 183 933-1140 176-381 (857)
107 PRK04195 replication factor C 99.5 9.6E-13 2.1E-17 160.0 17.9 189 932-1155 11-207 (482)
108 PRK14964 DNA polymerase III su 99.5 3.6E-12 7.9E-17 153.7 22.2 181 932-1149 10-219 (491)
109 PRK07994 DNA polymerase III su 99.5 1.4E-12 3.1E-17 161.3 19.2 180 932-1148 13-221 (647)
110 TIGR00362 DnaA chromosomal rep 99.5 1.2E-12 2.5E-17 155.9 17.6 167 971-1151 137-314 (405)
111 PRK08691 DNA polymerase III su 99.4 2.9E-12 6.4E-17 158.1 21.1 183 932-1151 13-224 (709)
112 KOG0729 26S proteasome regulat 99.4 3.5E-14 7.7E-19 154.2 3.8 192 632-895 213-420 (435)
113 TIGR03346 chaperone_ClpB ATP-d 99.4 9.8E-13 2.1E-17 169.5 17.2 184 933-1141 171-377 (852)
114 TIGR02928 orc1/cdc6 family rep 99.4 6.3E-12 1.4E-16 146.8 22.2 165 935-1119 15-213 (365)
115 TIGR00390 hslU ATP-dependent p 99.4 1.6E-12 3.4E-17 152.5 16.7 179 936-1114 13-342 (441)
116 PRK13342 recombination factor 99.4 4.4E-12 9.5E-17 151.4 20.8 167 932-1138 9-188 (413)
117 PRK06645 DNA polymerase III su 99.4 4.9E-12 1.1E-16 153.6 21.4 184 932-1152 18-234 (507)
118 PRK14951 DNA polymerase III su 99.4 6.9E-12 1.5E-16 155.0 22.6 177 932-1145 13-223 (618)
119 KOG0989 Replication factor C, 99.4 5.3E-12 1.1E-16 140.9 18.9 190 932-1156 33-236 (346)
120 PRK07764 DNA polymerase III su 99.4 4.9E-12 1.1E-16 160.9 21.0 180 932-1148 12-222 (824)
121 KOG0652 26S proteasome regulat 99.4 2.7E-13 5.9E-18 147.1 7.9 192 632-895 207-414 (424)
122 PRK10787 DNA-binding ATP-depen 99.4 2.6E-12 5.7E-17 163.3 17.7 171 936-1119 323-507 (784)
123 PRK14969 DNA polymerase III su 99.4 6.3E-12 1.4E-16 154.0 20.3 177 932-1145 13-218 (527)
124 PRK05563 DNA polymerase III su 99.4 1.1E-11 2.3E-16 153.0 22.2 177 932-1145 13-218 (559)
125 PRK14959 DNA polymerase III su 99.4 9.2E-12 2E-16 153.1 21.3 171 932-1138 13-212 (624)
126 PRK00411 cdc6 cell division co 99.4 1.4E-11 3.1E-16 145.5 22.2 184 934-1138 29-243 (394)
127 PRK05201 hslU ATP-dependent pr 99.4 1.7E-12 3.6E-17 152.4 13.5 179 936-1114 16-344 (443)
128 PRK07940 DNA polymerase III su 99.4 6.3E-12 1.4E-16 148.8 17.7 188 933-1145 3-212 (394)
129 PRK12422 chromosomal replicati 99.4 8.5E-12 1.8E-16 149.9 18.8 162 970-1145 141-311 (445)
130 TIGR02397 dnaX_nterm DNA polym 99.4 2.1E-11 4.5E-16 141.9 21.5 177 932-1145 11-216 (355)
131 PRK14088 dnaA chromosomal repl 99.4 2.4E-12 5.2E-17 154.7 14.1 167 971-1151 131-309 (440)
132 PRK12402 replication factor C 99.4 1.4E-11 3.1E-16 141.9 19.8 185 932-1151 12-227 (337)
133 TIGR00382 clpX endopeptidase C 99.4 6.6E-12 1.4E-16 148.8 17.0 148 937-1084 79-247 (413)
134 PRK14952 DNA polymerase III su 99.4 1.2E-11 2.6E-16 152.3 19.8 181 932-1149 10-221 (584)
135 PF05673 DUF815: Protein of un 99.4 1.2E-11 2.7E-16 136.1 17.3 187 931-1147 23-241 (249)
136 KOG0651 26S proteasome regulat 99.4 2E-12 4.3E-17 144.0 11.2 130 673-850 210-352 (388)
137 PRK14957 DNA polymerase III su 99.4 1.3E-11 2.9E-16 150.7 19.1 180 932-1148 13-221 (546)
138 PRK14963 DNA polymerase III su 99.4 1.5E-11 3.2E-16 149.8 18.6 171 932-1138 11-209 (504)
139 COG0465 HflB ATP-dependent Zn 99.4 1.2E-12 2.6E-17 159.2 9.1 190 632-894 185-391 (596)
140 PRK05896 DNA polymerase III su 99.4 2.9E-11 6.2E-16 148.2 21.1 182 932-1150 13-223 (605)
141 PHA02544 44 clamp loader, smal 99.4 9.7E-12 2.1E-16 142.7 16.0 187 932-1154 18-213 (316)
142 TIGR03420 DnaA_homol_Hda DnaA 99.4 4.2E-11 9.2E-16 130.5 20.2 184 932-1152 12-206 (226)
143 PRK07133 DNA polymerase III su 99.3 5.2E-11 1.1E-15 148.5 22.7 188 932-1150 15-222 (725)
144 PRK13341 recombination factor 99.3 3E-11 6.6E-16 152.2 20.8 174 932-1149 25-216 (725)
145 PRK14965 DNA polymerase III su 99.3 5.1E-11 1.1E-15 147.6 22.4 180 932-1148 13-221 (576)
146 CHL00081 chlI Mg-protoporyphyr 99.3 1.7E-11 3.8E-16 142.5 16.8 264 931-1237 13-328 (350)
147 PRK14086 dnaA chromosomal repl 99.3 1.3E-11 2.8E-16 151.2 16.4 165 971-1150 315-491 (617)
148 PRK06893 DNA replication initi 99.3 2.6E-11 5.6E-16 133.8 16.9 153 971-1145 40-201 (229)
149 PTZ00112 origin recognition co 99.3 6E-11 1.3E-15 146.9 21.5 190 935-1147 755-978 (1164)
150 PF00498 FHA: FHA domain; Int 99.3 5.2E-12 1.1E-16 112.9 8.8 67 147-216 1-68 (68)
151 PRK08903 DnaA regulatory inact 99.3 1.5E-10 3.3E-15 126.9 22.1 173 931-1145 14-197 (227)
152 PRK08084 DNA replication initi 99.3 1.6E-10 3.4E-15 128.2 22.4 178 931-1145 18-207 (235)
153 PRK06647 DNA polymerase III su 99.3 6.5E-11 1.4E-15 145.9 20.6 179 932-1147 13-220 (563)
154 PRK06305 DNA polymerase III su 99.3 1.3E-10 2.8E-15 140.1 22.8 171 932-1138 14-214 (451)
155 COG2812 DnaX DNA polymerase II 99.3 2E-11 4.2E-16 147.2 15.3 193 932-1155 13-228 (515)
156 PRK13407 bchI magnesium chelat 99.3 1.8E-11 3.8E-16 141.9 14.4 260 932-1236 5-311 (334)
157 PRK09111 DNA polymerase III su 99.3 8.2E-11 1.8E-15 145.7 20.6 185 932-1147 21-233 (598)
158 PRK14953 DNA polymerase III su 99.3 9.4E-11 2E-15 142.4 20.5 183 932-1151 13-224 (486)
159 PRK08727 hypothetical protein; 99.3 5.3E-10 1.1E-14 123.9 23.0 145 971-1138 42-196 (233)
160 PRK00440 rfc replication facto 99.3 2E-10 4.3E-15 131.4 20.0 170 932-1138 14-195 (319)
161 PRK14955 DNA polymerase III su 99.3 2.4E-10 5.2E-15 136.0 21.4 177 932-1145 13-226 (397)
162 PRK14970 DNA polymerase III su 99.3 1.1E-10 2.5E-15 137.0 18.0 173 932-1138 14-201 (367)
163 PRK14948 DNA polymerase III su 99.2 1.2E-10 2.6E-15 145.0 18.0 180 932-1148 13-223 (620)
164 TIGR02442 Cob-chelat-sub cobal 99.2 8.3E-11 1.8E-15 147.4 16.4 257 934-1236 3-309 (633)
165 PRK08451 DNA polymerase III su 99.2 3.2E-10 7E-15 138.2 20.5 181 932-1149 11-220 (535)
166 PRK14954 DNA polymerase III su 99.2 5.3E-10 1.1E-14 138.8 22.4 177 932-1138 13-220 (620)
167 PF00308 Bac_DnaA: Bacterial d 99.2 1.5E-10 3.2E-15 127.1 15.6 165 971-1149 35-210 (219)
168 PRK14087 dnaA chromosomal repl 99.2 1.3E-10 2.9E-15 140.0 16.5 164 971-1149 142-321 (450)
169 KOG0991 Replication factor C, 99.2 1.6E-10 3.6E-15 124.5 14.6 224 932-1192 24-260 (333)
170 COG1239 ChlI Mg-chelatase subu 99.2 2.8E-10 6.1E-15 132.6 17.7 261 932-1236 14-327 (423)
171 PRK14950 DNA polymerase III su 99.2 5.9E-10 1.3E-14 138.7 21.2 182 932-1150 13-224 (585)
172 TIGR01650 PD_CobS cobaltochela 99.2 1.1E-10 2.3E-15 134.2 13.4 143 971-1119 65-234 (327)
173 TIGR02640 gas_vesic_GvpN gas v 99.2 1.8E-10 3.8E-15 129.8 14.7 141 971-1118 22-198 (262)
174 TIGR02030 BchI-ChlI magnesium 99.2 3.3E-10 7.2E-15 131.7 16.5 258 934-1236 3-314 (337)
175 cd00009 AAA The AAA+ (ATPases 99.2 3E-10 6.6E-15 112.2 13.4 124 970-1103 19-150 (151)
176 TIGR02903 spore_lon_C ATP-depe 99.2 1.4E-09 3.1E-14 135.8 22.5 172 932-1123 151-371 (615)
177 PRK14971 DNA polymerase III su 99.2 9.7E-10 2.1E-14 137.0 20.8 179 932-1147 14-222 (614)
178 PRK05642 DNA replication initi 99.2 1.2E-09 2.7E-14 121.1 19.5 152 971-1145 46-206 (234)
179 PRK06620 hypothetical protein; 99.2 7.9E-10 1.7E-14 121.1 17.1 138 971-1145 45-187 (214)
180 smart00350 MCM minichromosome 99.1 2.5E-10 5.4E-15 139.9 14.0 184 918-1120 195-402 (509)
181 COG1474 CDC6 Cdc6-related prot 99.1 1.4E-09 3.1E-14 127.8 19.2 162 936-1120 18-205 (366)
182 COG0593 DnaA ATPase involved i 99.1 1.2E-09 2.6E-14 128.8 18.3 166 969-1149 112-288 (408)
183 cd00060 FHA Forkhead associate 99.1 2.4E-10 5.1E-15 108.8 9.3 96 128-226 2-101 (102)
184 PF07724 AAA_2: AAA domain (Cd 99.1 2.1E-10 4.5E-15 121.5 8.8 115 968-1085 1-130 (171)
185 KOG1969 DNA replication checkp 99.1 1.2E-09 2.7E-14 132.6 15.2 170 971-1157 327-517 (877)
186 COG2607 Predicted ATPase (AAA+ 99.1 3.2E-09 7E-14 115.5 16.6 185 931-1145 56-271 (287)
187 PHA02244 ATPase-like protein 99.1 2.1E-09 4.5E-14 125.1 15.4 129 971-1107 120-263 (383)
188 TIGR00368 Mg chelatase-related 99.0 5.9E-10 1.3E-14 135.6 10.8 153 932-1108 189-394 (499)
189 PRK05564 DNA polymerase III su 99.0 1.6E-08 3.6E-13 116.6 20.9 171 932-1139 1-183 (313)
190 COG0714 MoxR-like ATPases [Gen 99.0 2.2E-09 4.7E-14 124.7 13.6 138 971-1117 44-202 (329)
191 TIGR02031 BchD-ChlD magnesium 99.0 4.5E-09 9.8E-14 130.7 16.8 144 970-1118 16-174 (589)
192 PRK09112 DNA polymerase III su 99.0 1E-08 2.3E-13 120.1 18.6 185 932-1148 20-241 (351)
193 TIGR00678 holB DNA polymerase 99.0 9.7E-09 2.1E-13 109.7 16.6 143 969-1138 13-183 (188)
194 COG1219 ClpX ATP-dependent pro 99.0 2.9E-09 6.2E-14 119.5 12.2 131 937-1067 63-202 (408)
195 PRK09087 hypothetical protein; 99.0 1.6E-08 3.6E-13 111.7 17.7 137 971-1138 45-187 (226)
196 COG1224 TIP49 DNA helicase TIP 99.0 1.9E-08 4.1E-13 114.5 18.2 60 1077-1137 322-394 (450)
197 PRK07471 DNA polymerase III su 99.0 1.3E-08 2.9E-13 119.8 17.6 183 932-1148 16-239 (365)
198 PRK13531 regulatory ATPase Rav 99.0 9.8E-09 2.1E-13 123.1 16.3 249 937-1234 22-286 (498)
199 PF07728 AAA_5: AAA domain (dy 98.9 4.9E-10 1.1E-14 113.4 4.4 112 972-1096 1-139 (139)
200 smart00382 AAA ATPases associa 98.9 5E-09 1.1E-13 102.2 10.4 127 971-1105 3-147 (148)
201 COG0542 clpA ATP-binding subun 98.9 9.2E-09 2E-13 128.7 14.6 164 933-1121 168-349 (786)
202 PRK07399 DNA polymerase III su 98.9 1.5E-08 3.3E-13 117.1 15.1 182 933-1148 2-222 (314)
203 PRK04132 replication factor C 98.9 9.8E-09 2.1E-13 130.6 14.6 159 968-1153 562-734 (846)
204 PRK11331 5-methylcytosine-spec 98.9 1.5E-08 3.3E-13 120.7 14.4 122 971-1104 195-357 (459)
205 COG0470 HolB ATPase involved i 98.9 2.1E-08 4.4E-13 114.9 14.6 147 936-1113 2-176 (325)
206 COG2204 AtoC Response regulato 98.9 1.6E-08 3.4E-13 121.0 13.8 184 933-1137 139-353 (464)
207 TIGR03015 pepcterm_ATPase puta 98.8 1.6E-07 3.5E-12 105.2 20.3 192 971-1232 44-267 (269)
208 TIGR03354 VI_FHA type VI secre 98.8 4.5E-09 9.7E-14 124.7 8.1 83 138-224 17-103 (396)
209 COG0606 Predicted ATPase with 98.8 5.9E-09 1.3E-13 123.2 8.8 48 931-994 175-222 (490)
210 TIGR00764 lon_rel lon-related 98.8 5.4E-08 1.2E-12 121.5 17.8 51 931-997 14-64 (608)
211 PF01078 Mg_chelatase: Magnesi 98.8 2E-09 4.3E-14 116.5 4.1 45 934-994 2-46 (206)
212 PRK05707 DNA polymerase III su 98.8 7.3E-08 1.6E-12 112.1 17.1 150 969-1141 21-198 (328)
213 PRK09862 putative ATP-dependen 98.8 1.1E-08 2.3E-13 124.5 10.6 152 933-1108 189-391 (506)
214 TIGR00602 rad24 checkpoint pro 98.8 6.2E-08 1.3E-12 120.6 17.0 199 932-1156 81-329 (637)
215 KOG0745 Putative ATP-dependent 98.8 3.5E-08 7.7E-13 114.4 13.6 73 971-1043 227-305 (564)
216 PF07726 AAA_3: ATPase family 98.8 2.5E-09 5.5E-14 107.5 3.7 113 972-1096 1-129 (131)
217 COG1220 HslU ATP-dependent pro 98.8 6.2E-08 1.3E-12 109.7 13.2 86 1030-1115 251-346 (444)
218 PF00004 AAA: ATPase family as 98.8 4.3E-08 9.3E-13 97.0 10.5 62 676-740 45-118 (132)
219 PRK08058 DNA polymerase III su 98.7 7.4E-08 1.6E-12 112.2 13.8 149 933-1116 3-180 (329)
220 PF06068 TIP49: TIP49 C-termin 98.7 5.8E-08 1.3E-12 112.3 12.5 93 1030-1140 279-384 (398)
221 TIGR02974 phageshock_pspF psp 98.7 7.5E-08 1.6E-12 112.1 13.6 133 971-1112 23-177 (329)
222 KOG2035 Replication factor C, 98.7 3.2E-07 6.9E-12 101.9 17.2 190 933-1157 11-235 (351)
223 PTZ00111 DNA replication licen 98.7 1.2E-07 2.6E-12 120.4 15.9 188 915-1120 439-659 (915)
224 COG3829 RocR Transcriptional r 98.7 2.8E-08 6E-13 119.0 9.5 161 931-1112 241-424 (560)
225 COG3604 FhlA Transcriptional r 98.7 1E-07 2.2E-12 112.9 13.2 161 930-1111 218-400 (550)
226 KOG0744 AAA+-type ATPase [Post 98.7 5.4E-08 1.2E-12 109.6 10.3 200 417-816 131-346 (423)
227 PRK11608 pspF phage shock prot 98.7 9.9E-08 2.1E-12 111.0 12.9 158 934-1112 5-184 (326)
228 TIGR01817 nifA Nif-specific re 98.7 1.1E-07 2.4E-12 117.4 12.6 161 932-1120 193-386 (534)
229 PRK10820 DNA-binding transcrip 98.6 1.9E-07 4.1E-12 115.0 13.9 201 931-1154 200-436 (520)
230 COG1221 PspF Transcriptional r 98.6 1.3E-07 2.9E-12 111.4 11.8 159 932-1111 75-253 (403)
231 KOG1514 Origin recognition com 98.6 5.1E-07 1.1E-11 110.3 16.5 206 972-1237 424-661 (767)
232 PRK05022 anaerobic nitric oxid 98.6 2.2E-07 4.8E-12 114.2 13.3 159 933-1112 185-365 (509)
233 PF00158 Sigma54_activat: Sigm 98.6 4.9E-08 1.1E-12 103.2 6.6 118 971-1096 23-162 (168)
234 PRK15429 formate hydrogenlyase 98.6 4.1E-07 8.8E-12 115.7 15.9 160 932-1112 373-554 (686)
235 TIGR02329 propionate_PrpR prop 98.6 2.2E-07 4.7E-12 114.3 12.9 168 932-1120 209-403 (526)
236 PRK15424 propionate catabolism 98.6 1.3E-07 2.9E-12 116.2 10.2 167 932-1119 216-417 (538)
237 PRK06871 DNA polymerase III su 98.6 1.1E-06 2.3E-11 102.2 16.8 167 940-1140 7-197 (325)
238 KOG2227 Pre-initiation complex 98.6 3.8E-06 8.3E-11 99.2 20.8 186 936-1145 151-366 (529)
239 PF13177 DNA_pol3_delta2: DNA 98.6 3.2E-07 6.9E-12 96.4 10.8 133 939-1104 1-160 (162)
240 PRK12377 putative replication 98.6 4.1E-07 8.9E-12 102.0 12.2 108 920-1041 59-175 (248)
241 PRK07993 DNA polymerase III su 98.6 1.2E-06 2.6E-11 102.3 16.5 156 968-1144 22-202 (334)
242 PRK11388 DNA-binding transcrip 98.6 2.2E-07 4.9E-12 117.1 11.3 159 932-1111 322-499 (638)
243 PF03215 Rad17: Rad17 cell cyc 98.5 1.2E-06 2.6E-11 107.4 17.0 200 932-1156 16-269 (519)
244 PRK08116 hypothetical protein; 98.5 5.6E-07 1.2E-11 102.1 12.4 129 971-1116 115-258 (268)
245 PRK06090 DNA polymerase III su 98.5 3.6E-06 7.8E-11 97.6 19.1 159 940-1138 8-193 (319)
246 PRK08769 DNA polymerase III su 98.5 3.2E-06 7E-11 98.0 18.2 170 940-1144 9-206 (319)
247 PF05621 TniB: Bacterial TniB 98.5 4.3E-06 9.3E-11 95.4 18.1 177 971-1188 62-272 (302)
248 smart00240 FHA Forkhead associ 98.5 2E-07 4.3E-12 78.8 5.1 50 147-199 1-52 (52)
249 PRK07952 DNA replication prote 98.5 1.3E-06 2.8E-11 97.7 13.1 107 921-1041 58-174 (244)
250 PRK06964 DNA polymerase III su 98.4 9.4E-07 2E-11 103.3 11.7 152 968-1143 19-222 (342)
251 KOG0990 Replication factor C, 98.4 7.4E-07 1.6E-11 100.9 10.2 182 931-1150 37-232 (360)
252 smart00763 AAA_PrkA PrkA AAA d 98.4 2.1E-06 4.5E-11 100.3 14.2 62 934-1003 49-118 (361)
253 PRK13406 bchD magnesium chelat 98.4 1.2E-06 2.6E-11 108.9 12.7 133 970-1110 25-174 (584)
254 KOG0480 DNA replication licens 98.4 2.9E-06 6.2E-11 102.7 14.0 291 913-1238 332-650 (764)
255 KOG0482 DNA replication licens 98.4 1.9E-06 4.2E-11 101.6 12.1 218 912-1149 328-583 (721)
256 PRK13765 ATP-dependent proteas 98.3 8.5E-06 1.9E-10 102.1 17.6 49 931-995 27-75 (637)
257 COG1716 FOG: FHA domain [Signa 98.3 1.1E-06 2.5E-11 93.7 8.3 75 140-220 84-159 (191)
258 KOG1942 DNA helicase, TBP-inte 98.3 1.4E-05 2.9E-10 89.5 16.7 79 1077-1156 327-419 (456)
259 TIGR02915 PEP_resp_reg putativ 98.3 2.7E-06 5.9E-11 102.5 12.4 133 971-1112 163-317 (445)
260 PLN02927 antheraxanthin epoxid 98.3 1.2E-06 2.7E-11 109.9 9.2 89 136-228 545-647 (668)
261 KOG2680 DNA helicase TIP49, TB 98.3 9.7E-06 2.1E-10 90.9 14.8 39 1085-1124 339-377 (454)
262 COG1241 MCM2 Predicted ATPase 98.3 3.7E-06 7.9E-11 105.0 12.4 188 915-1121 275-486 (682)
263 KOG0478 DNA replication licens 98.3 3.7E-05 8E-10 94.1 19.3 191 913-1120 416-628 (804)
264 PF01637 Arch_ATPase: Archaeal 98.3 2.6E-06 5.7E-11 92.0 8.8 165 970-1145 20-232 (234)
265 PRK08181 transposase; Validate 98.2 3E-06 6.6E-11 96.1 9.6 70 971-1042 107-180 (269)
266 PRK06835 DNA replication prote 98.2 3.6E-06 7.8E-11 98.1 10.4 69 971-1041 184-258 (329)
267 TIGR02881 spore_V_K stage V sp 98.2 8E-06 1.7E-10 92.1 12.6 84 691-812 105-193 (261)
268 KOG0742 AAA+-type ATPase [Post 98.2 4.2E-06 9.2E-11 96.8 9.7 135 632-815 386-533 (630)
269 PRK08699 DNA polymerase III su 98.2 6.6E-06 1.4E-10 95.8 11.6 131 968-1116 19-183 (325)
270 PF00493 MCM: MCM2/3/5 family 98.2 5.1E-08 1.1E-12 113.6 -6.3 187 915-1121 13-224 (331)
271 PRK10923 glnG nitrogen regulat 98.2 1.1E-05 2.3E-10 98.2 13.3 165 934-1119 137-327 (469)
272 KOG1970 Checkpoint RAD17-RFC c 98.2 3.4E-05 7.3E-10 92.8 16.2 204 932-1155 79-320 (634)
273 COG1219 ClpX ATP-dependent pro 98.2 5.8E-06 1.3E-10 93.6 9.2 87 415-505 47-134 (408)
274 PRK08939 primosomal protein Dn 98.1 1.2E-05 2.6E-10 93.0 11.6 70 970-1041 156-229 (306)
275 PF13173 AAA_14: AAA domain 98.1 5.7E-06 1.2E-10 83.2 7.7 69 971-1041 3-73 (128)
276 PRK11361 acetoacetate metaboli 98.1 3E-05 6.4E-10 93.8 14.5 133 971-1112 167-321 (457)
277 PRK06921 hypothetical protein; 98.1 1E-05 2.2E-10 91.9 9.4 67 971-1040 118-188 (266)
278 TIGR01818 ntrC nitrogen regula 98.1 1.3E-05 2.8E-10 97.1 10.8 143 971-1119 158-323 (463)
279 PF01695 IstB_IS21: IstB-like 98.1 4.1E-06 8.9E-11 89.5 5.7 69 970-1040 47-119 (178)
280 PF14532 Sigma54_activ_2: Sigm 98.1 3.1E-06 6.7E-11 86.3 4.3 105 971-1105 22-136 (138)
281 PF13401 AAA_22: AAA domain; P 98.1 2.2E-05 4.8E-10 78.1 10.1 97 971-1082 5-125 (131)
282 PRK06526 transposase; Provisio 98.1 7.5E-06 1.6E-10 92.3 7.5 69 971-1041 99-171 (254)
283 PRK15115 response regulator Gl 98.0 6.8E-05 1.5E-09 90.5 15.0 141 971-1120 158-324 (444)
284 COG1484 DnaC DNA replication p 98.0 1.5E-05 3.2E-10 90.0 8.6 70 970-1041 105-179 (254)
285 PRK05342 clpX ATP-dependent pr 98.0 2.7E-05 5.9E-10 93.4 11.2 84 417-504 59-144 (412)
286 TIGR00382 clpX endopeptidase C 98.0 4.8E-05 1E-09 91.1 13.1 84 417-504 65-152 (413)
287 COG3456 Predicted component of 98.0 7.6E-06 1.7E-10 95.5 6.0 74 144-226 25-101 (430)
288 PF12775 AAA_7: P-loop contain 98.0 1.3E-05 2.7E-10 91.4 7.2 139 971-1120 34-195 (272)
289 PRK05917 DNA polymerase III su 97.9 0.00052 1.1E-08 78.7 19.0 120 969-1105 18-154 (290)
290 PRK09183 transposase/IS protei 97.9 2.6E-05 5.7E-10 88.2 7.8 70 971-1041 103-176 (259)
291 COG3283 TyrR Transcriptional r 97.9 9.3E-05 2E-09 85.0 12.0 152 932-1111 201-376 (511)
292 PRK10365 transcriptional regul 97.9 6.7E-05 1.5E-09 90.3 11.7 143 971-1119 163-328 (441)
293 KOG2170 ATPase of the AAA+ sup 97.9 0.00022 4.7E-09 80.9 14.3 183 937-1138 84-321 (344)
294 cd01120 RecA-like_NTPases RecA 97.8 7.5E-05 1.6E-09 75.9 9.3 71 973-1043 2-99 (165)
295 CHL00181 cbbX CbbX; Provisiona 97.8 3.9E-05 8.5E-10 88.0 8.0 133 633-812 62-211 (287)
296 PF05729 NACHT: NACHT domain 97.8 0.00012 2.6E-09 75.1 10.7 140 972-1120 2-165 (166)
297 PF12774 AAA_6: Hydrolytic ATP 97.8 0.00012 2.7E-09 81.5 11.1 147 971-1136 33-192 (231)
298 TIGR00763 lon ATP-dependent pr 97.8 0.00033 7.2E-09 90.7 16.5 34 466-501 347-380 (775)
299 KOG1968 Replication factor C, 97.7 3.5E-05 7.7E-10 99.0 6.6 167 972-1157 359-538 (871)
300 PF00931 NB-ARC: NB-ARC domain 97.7 0.00083 1.8E-08 75.9 17.0 155 969-1145 18-200 (287)
301 TIGR02880 cbbX_cfxQ probable R 97.7 4.5E-05 9.9E-10 87.3 5.5 136 630-812 58-210 (284)
302 PRK07276 DNA polymerase III su 97.6 0.0014 3E-08 75.5 17.0 154 968-1148 22-198 (290)
303 PRK05818 DNA polymerase III su 97.6 0.00074 1.6E-08 76.2 13.9 121 968-1105 5-147 (261)
304 PRK07132 DNA polymerase III su 97.6 0.00063 1.4E-08 78.6 13.3 125 970-1116 18-160 (299)
305 COG1618 Predicted nucleotide k 97.6 0.00071 1.5E-08 70.9 12.2 25 970-994 5-29 (179)
306 PF03969 AFG1_ATPase: AFG1-lik 97.6 0.00051 1.1E-08 81.4 12.3 102 967-1085 59-168 (362)
307 KOG1881 Anion exchanger adapto 97.6 0.00011 2.5E-09 90.1 7.0 88 142-230 173-269 (793)
308 KOG2228 Origin recognition com 97.5 0.00032 6.9E-09 80.6 9.9 161 936-1118 25-219 (408)
309 PF00910 RNA_helicase: RNA hel 97.4 0.00028 6E-09 69.2 6.8 23 973-995 1-23 (107)
310 TIGR01618 phage_P_loop phage n 97.4 0.00013 2.8E-09 80.6 4.7 110 970-1082 12-142 (220)
311 KOG0481 DNA replication licens 97.4 0.0011 2.4E-08 79.2 12.2 173 936-1118 332-528 (729)
312 KOG0477 DNA replication licens 97.4 0.00062 1.3E-08 82.8 10.1 166 914-1102 437-629 (854)
313 PHA00729 NTP-binding motif con 97.4 0.00031 6.7E-09 77.8 6.8 27 971-997 18-44 (226)
314 PRK00080 ruvB Holliday junctio 97.3 0.0043 9.4E-08 72.5 16.0 59 426-498 23-81 (328)
315 COG3284 AcoR Transcriptional a 97.3 0.00053 1.1E-08 84.4 8.3 175 971-1156 337-541 (606)
316 cd01124 KaiC KaiC is a circadi 97.3 0.0014 2.9E-08 69.4 10.3 71 973-1043 2-109 (187)
317 TIGR02237 recomb_radB DNA repa 97.3 0.00095 2.1E-08 72.4 9.0 75 969-1043 11-111 (209)
318 PRK00771 signal recognition pa 97.2 0.0094 2E-07 72.4 17.4 36 969-1004 94-132 (437)
319 COG5271 MDN1 AAA ATPase contai 97.2 0.001 2.2E-08 87.0 9.2 136 971-1120 1544-1705(4600)
320 COG4650 RtcR Sigma54-dependent 97.2 0.00044 9.5E-09 77.6 5.4 131 972-1112 210-366 (531)
321 PHA02624 large T antigen; Prov 97.2 0.00042 9.2E-09 85.5 5.7 120 971-1104 432-561 (647)
322 KOG0479 DNA replication licens 97.2 0.0019 4E-08 78.3 10.7 172 936-1119 302-499 (818)
323 KOG1882 Transcriptional regula 97.2 0.00088 1.9E-08 73.2 7.2 104 117-220 161-280 (293)
324 TIGR00362 DnaA chromosomal rep 97.2 0.0074 1.6E-07 72.6 15.9 78 693-812 201-283 (405)
325 PF13207 AAA_17: AAA domain; P 97.1 0.00041 8.9E-09 68.3 4.1 31 973-1003 2-32 (121)
326 PLN03210 Resistant to P. syrin 97.1 0.005 1.1E-07 83.4 15.6 171 933-1139 182-388 (1153)
327 TIGR00635 ruvB Holliday juncti 97.1 0.0046 1E-07 71.0 13.0 52 436-499 10-61 (305)
328 PF14516 AAA_35: AAA-like doma 97.1 0.0032 7E-08 73.8 11.7 162 969-1139 30-232 (331)
329 cd01121 Sms Sms (bacterial rad 97.0 0.003 6.6E-08 75.2 10.6 97 969-1065 81-196 (372)
330 PRK08118 topology modulation p 97.0 0.0016 3.4E-08 69.0 7.2 33 971-1003 2-34 (167)
331 PRK11823 DNA repair protein Ra 97.0 0.0043 9.3E-08 75.6 11.8 96 969-1064 79-193 (446)
332 PF03266 NTPase_1: NTPase; In 96.9 0.00025 5.4E-09 75.3 0.8 27 972-998 1-30 (168)
333 PRK14962 DNA polymerase III su 96.9 0.01 2.2E-07 72.8 14.7 73 691-810 117-189 (472)
334 PRK07261 topology modulation p 96.9 0.0021 4.6E-08 68.3 7.6 34 972-1005 2-35 (171)
335 COG5271 MDN1 AAA ATPase contai 96.9 0.0037 8E-08 82.2 10.6 140 971-1118 889-1047(4600)
336 COG3267 ExeA Type II secretory 96.9 0.024 5.1E-07 63.7 15.7 163 971-1145 52-243 (269)
337 KOG1051 Chaperone HSP104 and r 96.9 0.0055 1.2E-07 79.0 12.1 139 971-1120 209-365 (898)
338 PRK14974 cell division protein 96.9 0.015 3.3E-07 68.4 14.7 72 970-1041 140-234 (336)
339 PHA02544 44 clamp loader, smal 96.9 0.015 3.2E-07 67.3 14.4 75 692-812 101-175 (316)
340 PRK00149 dnaA chromosomal repl 96.8 0.0082 1.8E-07 73.3 12.5 78 692-811 212-294 (450)
341 cd01129 PulE-GspE PulE/GspE Th 96.8 0.0042 9.2E-08 70.6 9.2 93 932-1039 57-159 (264)
342 PRK00131 aroK shikimate kinase 96.8 0.0014 2.9E-08 68.4 4.6 33 970-1002 4-36 (175)
343 PRK15455 PrkA family serine pr 96.8 0.0018 3.9E-08 79.8 6.1 63 933-1003 74-137 (644)
344 PRK08533 flagellar accessory p 96.7 0.01 2.2E-07 66.2 11.5 74 969-1042 23-130 (230)
345 COG2256 MGS1 ATPase related to 96.7 0.0035 7.6E-08 73.8 8.1 118 633-808 51-174 (436)
346 PF05707 Zot: Zonular occluden 96.7 0.0025 5.4E-08 68.9 6.3 121 973-1103 3-144 (193)
347 PF13604 AAA_30: AAA domain; P 96.7 0.0044 9.5E-08 67.4 7.9 98 971-1084 19-132 (196)
348 TIGR02012 tigrfam_recA protein 96.7 0.0071 1.5E-07 70.6 10.0 76 969-1044 54-148 (321)
349 PRK09361 radB DNA repair and r 96.7 0.0062 1.3E-07 67.0 9.0 36 969-1004 22-60 (225)
350 PF13671 AAA_33: AAA domain; P 96.6 0.0042 9.1E-08 62.8 6.8 33 973-1007 2-34 (143)
351 PHA02774 E1; Provisional 96.6 0.017 3.6E-07 71.6 12.8 129 971-1126 435-589 (613)
352 PRK04296 thymidine kinase; Pro 96.6 0.014 3E-07 63.2 10.9 69 972-1041 4-90 (190)
353 PRK13695 putative NTPase; Prov 96.6 0.007 1.5E-07 64.1 8.4 23 972-994 2-24 (174)
354 COG3854 SpoIIIAA ncharacterize 96.6 0.011 2.3E-07 65.4 9.8 71 971-1041 138-230 (308)
355 cd01131 PilT Pilus retraction 96.6 0.0039 8.4E-08 67.8 6.6 68 972-1039 3-84 (198)
356 PRK04841 transcriptional regul 96.6 0.031 6.7E-07 73.4 16.2 156 971-1145 33-223 (903)
357 PF06309 Torsin: Torsin; Inte 96.6 0.0076 1.6E-07 61.2 8.0 52 936-994 26-77 (127)
358 cd00983 recA RecA is a bacter 96.5 0.01 2.2E-07 69.4 9.9 74 971-1044 56-148 (325)
359 PRK12724 flagellar biosynthesi 96.5 0.16 3.5E-06 61.4 19.8 68 971-1038 224-308 (432)
360 COG1485 Predicted ATPase [Gene 96.5 0.014 3.1E-07 68.0 10.6 102 967-1085 62-171 (367)
361 PRK10787 DNA-binding ATP-depen 96.5 0.096 2.1E-06 68.2 19.2 34 465-500 348-381 (784)
362 TIGR02858 spore_III_AA stage I 96.5 0.0065 1.4E-07 69.4 7.7 69 971-1039 112-204 (270)
363 COG1373 Predicted ATPase (AAA+ 96.5 0.024 5.2E-07 68.3 12.8 120 972-1112 39-161 (398)
364 PRK13947 shikimate kinase; Pro 96.4 0.0029 6.2E-08 66.4 4.4 32 972-1003 3-34 (171)
365 TIGR00390 hslU ATP-dependent p 96.4 0.0038 8.2E-08 74.8 5.6 81 420-505 3-84 (441)
366 PRK03839 putative kinase; Prov 96.4 0.0028 6.1E-08 67.3 4.0 31 972-1002 2-32 (180)
367 PRK12723 flagellar biosynthesi 96.4 0.021 4.5E-07 68.5 11.5 113 970-1096 174-309 (388)
368 PRK10536 hypothetical protein; 96.4 0.017 3.6E-07 65.5 10.0 22 972-993 76-97 (262)
369 cd00464 SK Shikimate kinase (S 96.3 0.0035 7.5E-08 64.2 4.1 31 972-1002 1-31 (154)
370 KOG2543 Origin recognition com 96.3 0.022 4.7E-07 66.9 10.9 156 936-1117 7-192 (438)
371 TIGR02533 type_II_gspE general 96.3 0.013 2.8E-07 72.3 9.5 95 930-1039 217-321 (486)
372 PRK05800 cobU adenosylcobinami 96.3 0.022 4.8E-07 60.7 10.1 72 972-1044 3-91 (170)
373 PF07693 KAP_NTPase: KAP famil 96.3 0.13 2.8E-06 59.4 17.2 78 1029-1120 172-265 (325)
374 PRK00625 shikimate kinase; Pro 96.3 0.0041 9E-08 66.5 4.3 31 972-1002 2-32 (173)
375 cd00046 DEXDc DEAD-like helica 96.2 0.013 2.8E-07 57.1 7.5 23 972-994 2-24 (144)
376 PRK09376 rho transcription ter 96.2 0.0091 2E-07 71.1 7.4 25 971-995 170-194 (416)
377 PF00437 T2SE: Type II/IV secr 96.2 0.0074 1.6E-07 68.3 6.3 97 931-1039 100-207 (270)
378 PRK14722 flhF flagellar biosyn 96.2 0.017 3.7E-07 68.7 9.4 109 970-1092 137-266 (374)
379 PRK14088 dnaA chromosomal repl 96.1 0.048 1E-06 66.6 13.2 79 691-811 194-277 (440)
380 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.039 8.5E-07 61.6 11.6 36 968-1003 19-57 (237)
381 TIGR01420 pilT_fam pilus retra 96.1 0.0094 2E-07 70.3 7.0 69 971-1039 123-205 (343)
382 PRK14532 adenylate kinase; Pro 96.1 0.0049 1.1E-07 65.9 4.2 35 972-1008 2-36 (188)
383 PRK06067 flagellar accessory p 96.1 0.039 8.4E-07 61.2 11.4 74 969-1042 24-133 (234)
384 PRK04195 replication factor C 96.1 0.08 1.7E-06 65.3 15.1 56 435-503 19-74 (482)
385 PRK13949 shikimate kinase; Pro 96.1 0.005 1.1E-07 65.4 4.0 32 971-1002 2-33 (169)
386 TIGR00416 sms DNA repair prote 96.1 0.027 5.9E-07 68.9 10.8 76 968-1043 92-184 (454)
387 COG2804 PulE Type II secretory 96.1 0.021 4.7E-07 69.4 9.7 99 923-1039 226-337 (500)
388 TIGR01359 UMP_CMP_kin_fam UMP- 96.1 0.0051 1.1E-07 65.2 4.1 34 973-1008 2-35 (183)
389 PRK05973 replicative DNA helic 96.1 0.058 1.3E-06 60.6 12.5 37 968-1004 62-101 (237)
390 PRK06762 hypothetical protein; 96.1 0.017 3.6E-07 60.5 7.7 37 971-1007 3-39 (166)
391 cd01394 radB RadB. The archaea 96.1 0.024 5.2E-07 62.0 9.2 35 970-1004 19-56 (218)
392 PRK13948 shikimate kinase; Pro 96.0 0.0067 1.5E-07 65.4 4.7 36 967-1002 7-42 (182)
393 PRK06217 hypothetical protein; 96.0 0.0061 1.3E-07 65.2 4.4 31 972-1002 3-33 (183)
394 PF06745 KaiC: KaiC; InterPro 96.0 0.053 1.1E-06 59.8 11.8 74 968-1041 17-127 (226)
395 cd03283 ABC_MutS-like MutS-lik 96.0 0.04 8.7E-07 60.2 10.4 69 971-1039 26-115 (199)
396 cd01122 GP4d_helicase GP4d_hel 96.0 0.051 1.1E-06 61.4 11.7 35 969-1003 29-67 (271)
397 PRK10436 hypothetical protein; 96.0 0.023 5E-07 69.6 9.4 100 925-1039 188-297 (462)
398 PRK13342 recombination factor 96.0 0.016 3.4E-07 70.1 7.9 126 632-812 38-166 (413)
399 PF00448 SRP54: SRP54-type pro 96.0 0.03 6.5E-07 61.1 9.3 69 971-1039 2-93 (196)
400 COG5245 DYN1 Dynein, heavy cha 95.9 0.062 1.3E-06 71.1 13.0 174 970-1156 1494-1717(3164)
401 cd02020 CMPK Cytidine monophos 95.9 0.0069 1.5E-07 61.3 3.9 30 973-1002 2-31 (147)
402 cd02021 GntK Gluconate kinase 95.9 0.0068 1.5E-07 62.2 3.9 29 973-1001 2-30 (150)
403 PRK14531 adenylate kinase; Pro 95.9 0.0078 1.7E-07 64.4 4.5 31 971-1001 3-33 (183)
404 PRK09354 recA recombinase A; P 95.9 0.037 8.1E-07 65.3 10.4 73 971-1043 61-152 (349)
405 PF13479 AAA_24: AAA domain 95.9 0.024 5.2E-07 62.4 8.3 69 971-1042 4-81 (213)
406 cd01428 ADK Adenylate kinase ( 95.9 0.0069 1.5E-07 64.6 4.0 29 973-1001 2-30 (194)
407 PF05496 RuvB_N: Holliday junc 95.9 0.0023 5E-08 70.8 0.4 130 633-808 53-190 (233)
408 PRK12726 flagellar biosynthesi 95.9 0.05 1.1E-06 64.8 11.3 99 939-1041 179-297 (407)
409 cd00544 CobU Adenosylcobinamid 95.9 0.043 9.4E-07 58.5 9.8 71 973-1045 2-89 (169)
410 PF09336 Vps4_C: Vps4 C termin 95.9 0.0055 1.2E-07 54.8 2.5 35 1217-1253 28-62 (62)
411 COG0703 AroK Shikimate kinase 95.9 0.0068 1.5E-07 64.6 3.6 33 971-1003 3-35 (172)
412 PRK11889 flhF flagellar biosyn 95.8 0.063 1.4E-06 64.3 11.8 72 970-1041 241-332 (436)
413 PF13191 AAA_16: AAA ATPase do 95.8 0.0092 2E-07 62.6 4.5 59 937-1006 2-63 (185)
414 PRK14530 adenylate kinase; Pro 95.8 0.0086 1.9E-07 65.7 4.4 30 972-1001 5-34 (215)
415 TIGR02538 type_IV_pilB type IV 95.8 0.025 5.4E-07 71.1 8.9 94 931-1039 292-395 (564)
416 cd01393 recA_like RecA is a b 95.8 0.045 9.7E-07 60.1 9.9 37 969-1005 18-63 (226)
417 KOG3347 Predicted nucleotide k 95.8 0.0075 1.6E-07 62.6 3.4 32 971-1002 8-39 (176)
418 PRK06581 DNA polymerase III su 95.8 0.1 2.2E-06 58.7 12.4 132 970-1120 15-163 (263)
419 cd01128 rho_factor Transcripti 95.7 0.021 4.6E-07 64.6 7.2 26 971-996 17-42 (249)
420 COG0563 Adk Adenylate kinase a 95.7 0.011 2.4E-07 63.5 4.7 33 972-1006 2-34 (178)
421 PRK11331 5-methylcytosine-spec 95.7 0.064 1.4E-06 65.2 11.5 26 466-493 194-219 (459)
422 cd00984 DnaB_C DnaB helicase C 95.7 0.072 1.6E-06 59.0 11.3 36 968-1003 11-50 (242)
423 TIGR01313 therm_gnt_kin carboh 95.7 0.0081 1.8E-07 62.6 3.5 29 973-1001 1-29 (163)
424 KOG2383 Predicted ATPase [Gene 95.7 0.056 1.2E-06 64.0 10.5 28 967-994 111-138 (467)
425 cd01123 Rad51_DMC1_radA Rad51_ 95.7 0.036 7.9E-07 61.1 8.7 37 969-1005 18-63 (235)
426 COG4088 Predicted nucleotide k 95.7 0.047 1E-06 59.7 9.1 23 972-994 3-25 (261)
427 TIGR02782 TrbB_P P-type conjug 95.7 0.017 3.8E-07 66.9 6.4 69 971-1039 133-214 (299)
428 TIGR02525 plasmid_TraJ plasmid 95.7 0.02 4.4E-07 68.3 7.0 69 971-1039 150-235 (372)
429 smart00487 DEXDc DEAD-like hel 95.7 0.054 1.2E-06 56.2 9.5 24 971-994 25-49 (201)
430 PRK03731 aroL shikimate kinase 95.7 0.011 2.5E-07 62.0 4.4 32 971-1002 3-34 (171)
431 PRK13900 type IV secretion sys 95.7 0.031 6.8E-07 65.7 8.5 69 971-1039 161-245 (332)
432 TIGR01425 SRP54_euk signal rec 95.7 0.12 2.7E-06 62.6 13.6 72 969-1040 99-193 (429)
433 PTZ00088 adenylate kinase 1; P 95.6 0.011 2.5E-07 65.9 4.5 32 971-1002 7-38 (229)
434 PF04665 Pox_A32: Poxvirus A32 95.6 0.12 2.6E-06 58.2 12.5 132 969-1117 12-169 (241)
435 TIGR03878 thermo_KaiC_2 KaiC d 95.6 0.096 2.1E-06 59.5 11.8 36 969-1004 35-73 (259)
436 PRK13764 ATPase; Provisional 95.6 0.02 4.2E-07 72.0 6.8 68 971-1039 258-334 (602)
437 PRK08233 hypothetical protein; 95.6 0.063 1.4E-06 56.5 9.7 33 971-1003 4-37 (182)
438 TIGR02928 orc1/cdc6 family rep 95.6 0.042 9.2E-07 64.7 9.2 93 677-811 117-213 (365)
439 cd00227 CPT Chloramphenicol (C 95.5 0.011 2.5E-07 62.6 3.9 34 971-1004 3-36 (175)
440 PRK05201 hslU ATP-dependent pr 95.5 0.013 2.8E-07 70.4 4.7 82 420-506 6-88 (443)
441 PRK14528 adenylate kinase; Pro 95.5 0.014 2.9E-07 63.0 4.4 31 971-1001 2-32 (186)
442 cd01130 VirB11-like_ATPase Typ 95.5 0.029 6.4E-07 60.2 7.0 69 971-1039 26-110 (186)
443 PRK06547 hypothetical protein; 95.5 0.014 3E-07 62.4 4.4 34 969-1002 14-47 (172)
444 cd03281 ABC_MSH5_euk MutS5 hom 95.5 0.093 2E-06 57.9 10.9 22 971-992 30-51 (213)
445 TIGR03574 selen_PSTK L-seryl-t 95.5 0.048 1E-06 61.3 8.8 34 973-1006 2-38 (249)
446 PRK05057 aroK shikimate kinase 95.5 0.014 3.1E-07 62.0 4.4 33 971-1003 5-37 (172)
447 PRK13946 shikimate kinase; Pro 95.5 0.013 2.7E-07 62.9 3.9 33 971-1003 11-43 (184)
448 PRK02496 adk adenylate kinase; 95.5 0.014 3E-07 62.3 4.2 30 972-1001 3-32 (184)
449 TIGR01360 aden_kin_iso1 adenyl 95.4 0.014 3.1E-07 61.7 4.2 30 971-1000 4-33 (188)
450 TIGR03420 DnaA_homol_Hda DnaA 95.4 0.17 3.7E-06 55.3 12.7 53 424-493 11-63 (226)
451 COG4619 ABC-type uncharacteriz 95.4 0.056 1.2E-06 57.5 8.1 26 969-994 28-53 (223)
452 PRK04328 hypothetical protein; 95.4 0.14 3E-06 57.8 12.0 36 968-1003 21-59 (249)
453 PRK08154 anaerobic benzoate ca 95.4 0.044 9.4E-07 63.9 8.2 36 967-1002 130-165 (309)
454 cd02027 APSK Adenosine 5'-phos 95.3 0.043 9.3E-07 57.0 7.3 34 973-1006 2-38 (149)
455 TIGR01448 recD_rel helicase, p 95.3 0.071 1.5E-06 68.9 10.6 101 972-1089 340-459 (720)
456 TIGR00064 ftsY signal recognit 95.3 0.29 6.2E-06 56.2 14.4 35 969-1003 71-108 (272)
457 TIGR01351 adk adenylate kinase 95.3 0.015 3.3E-07 63.5 3.9 29 973-1001 2-30 (210)
458 PRK00279 adk adenylate kinase; 95.3 0.017 3.8E-07 63.3 4.4 30 972-1001 2-31 (215)
459 PF10236 DAP3: Mitochondrial r 95.3 0.7 1.5E-05 54.0 17.8 116 1029-1145 156-307 (309)
460 PLN02200 adenylate kinase fami 95.3 0.019 4.1E-07 64.3 4.7 38 969-1008 42-79 (234)
461 smart00534 MUTSac ATPase domai 95.2 0.14 3.1E-06 55.0 11.0 19 973-991 2-20 (185)
462 COG1102 Cmk Cytidylate kinase 95.2 0.016 3.5E-07 61.0 3.6 28 973-1000 3-30 (179)
463 PRK14956 DNA polymerase III su 95.2 0.068 1.5E-06 65.5 9.4 72 690-808 120-191 (484)
464 PF13238 AAA_18: AAA domain; P 95.2 0.015 3.3E-07 57.2 3.3 22 973-994 1-22 (129)
465 cd03280 ABC_MutS2 MutS2 homolo 95.2 0.13 2.9E-06 55.8 10.8 21 971-991 29-49 (200)
466 PRK10416 signal recognition pa 95.2 0.27 5.8E-06 57.7 13.9 35 969-1003 113-150 (318)
467 cd03243 ABC_MutS_homologs The 95.2 0.12 2.6E-06 56.2 10.3 21 971-991 30-50 (202)
468 PF09848 DUF2075: Uncharacteri 95.1 0.049 1.1E-06 64.5 7.8 23 972-994 3-25 (352)
469 PF13481 AAA_25: AAA domain; P 95.1 0.092 2E-06 56.0 9.3 74 971-1044 33-156 (193)
470 cd03115 SRP The signal recogni 95.1 0.068 1.5E-06 56.4 8.1 33 972-1004 2-37 (173)
471 TIGR03880 KaiC_arch_3 KaiC dom 95.1 0.2 4.3E-06 55.3 12.0 36 969-1004 15-53 (224)
472 PRK10867 signal recognition pa 95.1 0.16 3.4E-06 61.9 12.0 73 969-1041 99-195 (433)
473 TIGR02788 VirB11 P-type DNA tr 95.1 0.033 7.1E-07 64.8 6.0 69 971-1039 145-228 (308)
474 PF05272 VirE: Virulence-assoc 95.0 0.039 8.4E-07 60.4 6.0 111 971-1103 53-168 (198)
475 PRK13833 conjugal transfer pro 95.0 0.038 8.2E-07 64.8 6.3 69 971-1039 145-225 (323)
476 PRK13851 type IV secretion sys 95.0 0.031 6.6E-07 66.1 5.6 69 971-1039 163-246 (344)
477 cd02019 NK Nucleoside/nucleoti 95.0 0.064 1.4E-06 48.6 6.4 30 973-1002 2-32 (69)
478 PRK00411 cdc6 cell division co 95.0 0.11 2.5E-06 61.8 10.5 94 675-811 124-221 (394)
479 TIGR03499 FlhF flagellar biosy 95.0 0.095 2.1E-06 60.3 9.4 36 970-1005 194-234 (282)
480 PF08433 KTI12: Chromatin asso 95.0 0.083 1.8E-06 60.5 8.8 68 973-1041 4-82 (270)
481 PRK06696 uridine kinase; Valid 95.0 0.054 1.2E-06 59.9 7.1 38 970-1007 22-62 (223)
482 TIGR00959 ffh signal recogniti 94.9 0.18 4E-06 61.3 12.1 73 969-1041 98-194 (428)
483 TIGR02655 circ_KaiC circadian 94.9 0.16 3.5E-06 62.7 11.8 75 968-1042 261-366 (484)
484 PRK04040 adenylate kinase; Pro 94.9 0.027 5.8E-07 61.0 4.4 29 971-999 3-33 (188)
485 KOG3928 Mitochondrial ribosome 94.9 0.63 1.4E-05 55.6 15.8 111 1030-1145 316-454 (461)
486 PRK13894 conjugal transfer ATP 94.9 0.039 8.4E-07 64.6 6.0 69 971-1039 149-229 (319)
487 PF01745 IPT: Isopentenyl tran 94.9 0.033 7.2E-07 61.3 4.9 38 972-1009 3-40 (233)
488 KOG0745 Putative ATP-dependent 94.9 0.05 1.1E-06 64.7 6.7 35 468-504 228-262 (564)
489 PRK14527 adenylate kinase; Pro 94.9 0.023 5E-07 61.2 3.7 30 971-1000 7-36 (191)
490 PF08303 tRNA_lig_kinase: tRNA 94.9 0.49 1.1E-05 50.4 13.3 130 976-1121 5-146 (168)
491 TIGR02688 conserved hypothetic 94.9 0.033 7.2E-07 66.9 5.4 59 971-1041 210-272 (449)
492 PRK04182 cytidylate kinase; Pr 94.8 0.026 5.6E-07 59.3 4.0 29 972-1000 2-30 (180)
493 PF00406 ADK: Adenylate kinase 94.8 0.021 4.6E-07 59.0 3.2 33 975-1009 1-33 (151)
494 PF06414 Zeta_toxin: Zeta toxi 94.8 0.084 1.8E-06 57.3 7.9 40 969-1008 14-54 (199)
495 PRK14086 dnaA chromosomal repl 94.7 0.081 1.8E-06 66.6 8.4 80 691-812 377-461 (617)
496 PLN02674 adenylate kinase 94.7 0.031 6.8E-07 63.0 4.4 36 970-1007 31-66 (244)
497 KOG2028 ATPase related to the 94.7 0.076 1.6E-06 62.0 7.4 107 614-735 148-261 (554)
498 cd01125 repA Hexameric Replica 94.7 0.2 4.4E-06 55.9 10.8 21 973-993 4-24 (239)
499 PF02562 PhoH: PhoH-like prote 94.7 0.081 1.8E-06 58.2 7.4 23 972-994 21-43 (205)
500 COG1066 Sms Predicted ATP-depe 94.6 0.19 4.1E-06 60.0 10.6 97 968-1064 91-205 (456)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-68 Score=613.21 Aligned_cols=559 Identities=30% Similarity=0.444 Sum_probs=434.5
Q ss_pred CccccccccccccccchhHHHHHHHHHhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEE
Q 000823 420 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 499 (1267)
Q Consensus 420 ~~~~~vsfd~FPYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~~ 499 (1267)
....+|+|.++-.. +.|-..|..-+ .|++|++...|+--. .++.+||.|||| |.++|||.|+|.++|+++|-+
T Consensus 182 ~~~snv~f~diGG~--d~~~~el~~li-~~i~~Pe~~~~lGv~--PprGvLlHGPPG--CGKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 182 FPESNVSFSDIGGL--DKTLAELCELI-IHIKHPEVFSSLGVR--PPRGVLLHGPPG--CGKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred CCCCCcchhhccCh--HHHHHHHHHHH-HHhcCchhHhhcCCC--CCCceeeeCCCC--ccHHHHHHHHhhhcCCceEee
Confidence 45668899996654 66666665544 579999988776433 357899999999 999999999999999999877
Q ss_pred eccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 000823 500 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 579 (1267)
Q Consensus 500 D~~~~~~~~~~~e~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (1267)
-...+-+|++
T Consensus 255 sApeivSGvS---------------------------------------------------------------------- 264 (802)
T KOG0733|consen 255 SAPEIVSGVS---------------------------------------------------------------------- 264 (802)
T ss_pred cchhhhcccC----------------------------------------------------------------------
Confidence 6543332211
Q ss_pred ccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceecccCCCCCCCCCCCCCCCCccccccc
Q 000823 580 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 659 (1267)
Q Consensus 580 s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgv~Fd~~~~~~~~l~~~c~~~~~ff~~~ 659 (1267)
T Consensus 265 -------------------------------------------------------------------------------- 264 (802)
T KOG0733|consen 265 -------------------------------------------------------------------------------- 264 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc----CCcchhhHHHHHHhc----C------CCcE
Q 000823 660 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKSRLEK----L------PDKV 725 (1267)
Q Consensus 660 ~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~----g~~~~~~~lk~~L~~----l------~g~V 725 (1267)
|| .+--|+.||+.+.+ ..|+||||||||.+-. ++.|+-..+...|.. + ..+|
T Consensus 265 ---------GE--SEkkiRelF~~A~~---~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~V 330 (802)
T KOG0733|consen 265 ---------GE--SEKKIRELFDQAKS---NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPV 330 (802)
T ss_pred ---------cc--cHHHHHHHHHHHhc---cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCe
Confidence 22 34478999999999 9999999999998655 455555566666622 1 2589
Q ss_pred EEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHH
Q 000823 726 IVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLAS 805 (1267)
Q Consensus 726 vvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~I 805 (1267)
+|||+||++|+.|++ |||.|| |+++|.++.|++.+|.+|
T Consensus 331 lVIgATnRPDslDpa-------LRRaGR----------------------------------FdrEI~l~vP~e~aR~~I 369 (802)
T KOG0733|consen 331 LVIGATNRPDSLDPA-------LRRAGR----------------------------------FDREICLGVPSETAREEI 369 (802)
T ss_pred EEEecCCCCcccCHH-------Hhcccc----------------------------------ccceeeecCCchHHHHHH
Confidence 999999999999999 999999 999999999999999999
Q ss_pred HHHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCC-----CCCcc--c
Q 000823 806 WKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPE-----ADPDA--R 878 (1267)
Q Consensus 806 wK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~-----p~~~~--k 878 (1267)
|+++.+. +...-+++.-+.+-.+.||.||||.+||.++..+ |+.+++..... |.... .
T Consensus 370 L~~~~~~----lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~v-----------AikR~ld~~~~p~~~~~~~ed~~~ 434 (802)
T KOG0733|consen 370 LRIICRG----LRLSGDFDFKQLAKLTPGFVGADLMALCREAAFV-----------AIKRILDQSSSPLTKVPISEDSSN 434 (802)
T ss_pred HHHHHhh----CCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHH-----------HHHHHhhcccCccccCCccccccC
Confidence 9987765 7777788888888999999999999999985543 33334332211 11000 0
Q ss_pred ccccch--------------hHHHHHHHHHHHHHhhHhh-hhh-ccccCCHHHHHHHHhcCcCCC--------CCCCccc
Q 000823 879 LVLSCE--------------SIQYGIGIFQAIQNESKSL-KKS-LKDVVTENEFEKRLLADVIPP--------SDIGVTF 934 (1267)
Q Consensus 879 l~Is~e--------------d~~~al~~lq~l~~~~k~l-k~~-~k~~v~~~e~e~~li~~ii~~--------~~~~vt~ 934 (1267)
.-+..+ ++...+ .+.+......+ +.. -.-.+.-++|+..+. . +.| ..++++|
T Consensus 435 ~~~~~d~S~i~~~~~~~~~~~ld~v~--~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~-~-iQPSakREGF~tVPdVtW 510 (802)
T KOG0733|consen 435 KDAEEDQSSIKITSNAERPLELDRVV--QDAILNNPDPLSKELLEGLSIKFEDFEEALS-K-IQPSAKREGFATVPDVTW 510 (802)
T ss_pred CCccchhhhhhcCCcccccccHHHHH--HHHHHhCCCCcChHHhccceecHHHHHHHHH-h-cCcchhcccceecCCCCh
Confidence 111111 111111 01111111100 011 112255677776542 1 222 1357999
Q ss_pred hhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhccCcc
Q 000823 935 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEG 1014 (1267)
Q Consensus 935 ~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~Ge~ 1014 (1267)
+|||++++++.+|..+|.+|.++|+.|...|+.. +.|||||||||||||.||+|+|++.+++|+.|..++|+++|+|++
T Consensus 511 ~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~-PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGES 589 (802)
T KOG0733|consen 511 DDIGALEEVRLELNMAILAPIKRPDLFKALGIDA-PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGES 589 (802)
T ss_pred hhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC-CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhH
Confidence 9999999999999999999999999999999765 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHh
Q 000823 1015 EKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR 1094 (1267)
Q Consensus 1015 e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr 1094 (1267)
|..|+++|..|+.++|||||+||||.|+++|+... .....+++|+||++|||+.. +..|.|||+||+|+.+||+++|
T Consensus 590 ErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiIDpAiLR 666 (802)
T KOG0733|consen 590 ERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIIDPAILR 666 (802)
T ss_pred HHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhccccc--ccceEEEeecCCCcccchhhcC
Confidence 99999999999999999999999999999987655 66778999999999999965 5789999999999999999999
Q ss_pred --cccccccCCCCCHHHHHHHHHHHHh--hCCCCCcccHHHHHHHcC--CCCHHHHHHHHhhhhhHHHHHhhhhhhhHHH
Q 000823 1095 --RLPRRLMVNLPDAPNRAKILQVILA--KEDLSPDVDFDAIANMTD--GYSGSDLKVIFLSHSLICNVLLLNLWSDWLL 1168 (1267)
Q Consensus 1095 --RFd~vI~~~~Pd~eeR~eIL~~ll~--k~~l~~dvdl~~LA~~Te--GySg~DL~~Lv~~a~l~~~vr~~~~l~~~i~ 1168 (1267)
|||..+++++|+.++|.+||+.+.+ +..+..|+|+++||+.+. ||+|+||.
T Consensus 667 PGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLa----------------------- 723 (802)
T KOG0733|consen 667 PGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLA----------------------- 723 (802)
T ss_pred CCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHH-----------------------
Confidence 9999999999999999999999999 677889999999999887 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhcccccccccchhhhHHH
Q 000823 1169 VYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQW 1248 (1267)
Q Consensus 1169 ~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~~~~~~~v~W 1248 (1267)
.||++|++.++++.+...... + ...........+|+.||++|+++++||++... ..-|..-
T Consensus 724 -------aLvreAsi~AL~~~~~~~~~~------~----~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~d--r~~Yd~l 784 (802)
T KOG0733|consen 724 -------ALVREASILALRESLFEIDSS------E----DDVTVRSSTIIVTYKHFEEAFQRIRPSVSERD--RKKYDRL 784 (802)
T ss_pred -------HHHHHHHHHHHHHHHhhcccc------C----cccceeeeeeeecHHHHHHHHHhcCCCccHHH--HHHHHHH
Confidence 899999999999876532110 0 00000011346999999999999999999763 3345556
Q ss_pred HHhhCCC
Q 000823 1249 NELYGEG 1255 (1267)
Q Consensus 1249 ~di~G~~ 1255 (1267)
+..+|+-
T Consensus 785 ~k~~~L~ 791 (802)
T KOG0733|consen 785 NKSRSLS 791 (802)
T ss_pred hhhhccc
Confidence 6666643
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-60 Score=563.65 Aligned_cols=405 Identities=31% Similarity=0.525 Sum_probs=345.0
Q ss_pred HHHHHHHHHhhhccCC-CeEEEEcchhhhhcCCcch---hhHHHHHH----hcC--CCcEEEEeecccCCCccccCCCCC
Q 000823 676 LINTLFEVVFSESRSC-PFILFMKDAEKSIAGNSDS---YSTFKSRL----EKL--PDKVIVIGSHTHTDNRKEKSHPGG 745 (1267)
Q Consensus 676 ~i~~L~ev~~~~~~~~-p~ILfi~di~~~l~g~~~~---~~~lk~~L----~~l--~g~VvvIGst~~~d~~~~~~~~~~ 745 (1267)
.++..|+.+.+ .+ |+||||||++.+..++... -..+.+.| +-+ .++|+||+++++++..+|+
T Consensus 265 ~LR~~f~~a~k---~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~a----- 336 (693)
T KOG0730|consen 265 NLRKAFAEALK---FQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPA----- 336 (693)
T ss_pred HHHHHHHHHhc---cCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChh-----
Confidence 55666777766 77 9999999999976522221 22344444 333 4899999999999999999
Q ss_pred ccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchh
Q 000823 746 LLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNH 825 (1267)
Q Consensus 746 ~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~ 825 (1267)
||| || |+++++|+.|+..+|++|+..+.++ +.....+.+
T Consensus 337 --lRR-gR----------------------------------fd~ev~IgiP~~~~RldIl~~l~k~----~~~~~~~~l 375 (693)
T KOG0730|consen 337 --LRR-GR----------------------------------FDREVEIGIPGSDGRLDILRVLTKK----MNLLSDVDL 375 (693)
T ss_pred --hhc-CC----------------------------------CcceeeecCCCchhHHHHHHHHHHh----cCCcchhhH
Confidence 888 88 9999999999999999999998877 445567888
Q ss_pred HHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccccchhHHHHHHHHHHHHHhhHhhhh
Q 000823 826 LRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKK 905 (1267)
Q Consensus 826 l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~~lq~l~~~~k~lk~ 905 (1267)
...+..++||.|+||..+|.++.+- +..+ +.++|..++...++
T Consensus 376 ~~iA~~thGyvGaDL~~l~~ea~~~-----------~~r~----------------~~~~~~~A~~~i~p---------- 418 (693)
T KOG0730|consen 376 EDIAVSTHGYVGADLAALCREASLQ-----------ATRR----------------TLEIFQEALMGIRP---------- 418 (693)
T ss_pred HHHHHHccchhHHHHHHHHHHHHHH-----------Hhhh----------------hHHHHHHHHhcCCc----------
Confidence 9999999999999999999872221 1100 33444444332111
Q ss_pred hccccCCHHHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHH
Q 000823 906 SLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTM 985 (1267)
Q Consensus 906 ~~k~~v~~~e~e~~li~~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~ 985 (1267)
.. +.. ++ .+.++++|+||+|++++|++|++.|.+|+++|+.|.+.++ .|+++||||||||||||+
T Consensus 419 -------sa-----~Re-~~-ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi-~ppkGVLlyGPPGC~KT~ 483 (693)
T KOG0730|consen 419 -------SA-----LRE-IL-VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI-SPPKGVLLYGPPGCGKTL 483 (693)
T ss_pred -------hh-----hhh-ee-ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC-CCCceEEEECCCCcchHH
Confidence 00 011 11 4456899999999999999999999999999999999985 566999999999999999
Q ss_pred HHHHHHHHhCCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhc
Q 000823 986 LAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1065 (1267)
Q Consensus 986 LAkALA~elg~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~l 1065 (1267)
+|+|+|++.+++|+.+.+++++++|+|++|+.++++|+.|+..+|+|||+||||.+.+.|+.... .+..+++++||.+|
T Consensus 484 lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~-~v~~RVlsqLLtEm 562 (693)
T KOG0730|consen 484 LAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS-GVTDRVLSQLLTEM 562 (693)
T ss_pred HHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc-chHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999974443 78899999999999
Q ss_pred cCCcccCCCcEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHH
Q 000823 1066 DGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSD 1143 (1267)
Q Consensus 1066 dgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~D 1143 (1267)
||+.. ..+|+|||+||+|+.||++++| |||+.|+|++|+.+.|.+||+.++++..+.+++|++.||+.|+||||+|
T Consensus 563 DG~e~--~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAe 640 (693)
T KOG0730|consen 563 DGLEA--LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAE 640 (693)
T ss_pred ccccc--cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHH
Confidence 99975 4789999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHH
Q 000823 1144 LKVIFLSHSLICNVLLLNLWSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDD 1223 (1267)
Q Consensus 1144 L~~Lv~~a~l~~~vr~~~~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eD 1223 (1267)
|. ++|++|+..++++.++ ...|+.+|
T Consensus 641 l~------------------------------~lCq~A~~~a~~e~i~------------------------a~~i~~~h 666 (693)
T KOG0730|consen 641 IV------------------------------AVCQEAALLALRESIE------------------------ATEITWQH 666 (693)
T ss_pred HH------------------------------HHHHHHHHHHHHHhcc------------------------cccccHHH
Confidence 99 9999999999998554 25699999
Q ss_pred HHHHHHHhccccccc
Q 000823 1224 FKYAHERVCASVSSE 1238 (1267)
Q Consensus 1224 f~~Al~~v~pS~s~~ 1238 (1267)
|.+|++.++++.+..
T Consensus 667 f~~al~~~r~s~~~~ 681 (693)
T KOG0730|consen 667 FEEALKAVRPSLTSE 681 (693)
T ss_pred HHHHHHhhcccCCHH
Confidence 999999999999875
No 3
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-56 Score=500.90 Aligned_cols=380 Identities=59% Similarity=0.929 Sum_probs=349.2
Q ss_pred eeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccccchhHHHHHHHHHHHHHhhHhhhhhcc-ccCCHHHHHHHHh
Q 000823 843 LCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLK-DVVTENEFEKRLL 921 (1267)
Q Consensus 843 L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~~lq~l~~~~k~lk~~~k-~~v~~~e~e~~li 921 (1267)
.|+.+..+....+..++.+|++||+.+...|.-+.+..+..+++.++...++.+-.. .+.+ ..+..+++|..++
T Consensus 4 ~~~~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i~ 78 (386)
T KOG0737|consen 4 SFTKDDVLITSLIRKIVAAAISHHLVHLLVPRLDPNLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRIA 78 (386)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhccccccChhhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHhh
Confidence 556666677889999999999999998888775558899999999997777664332 1222 4788999999999
Q ss_pred cCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEe
Q 000823 922 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1267)
Q Consensus 922 ~~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I 1001 (1267)
++++++.+++++|+||+|++.++++|++.|..|+++|++|..+++.+|++|||||||||||||++|+|+|++.|++|+.|
T Consensus 79 s~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 79 SDVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred hcccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEe
Q 000823 1002 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 1081 (1267)
Q Consensus 1002 ~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaT 1081 (1267)
.++.+.++|+|+.+++++.+|..|.+.+|+||||||||.+++.| ...++++...+.++||..|||+.++++.+|+|+|+
T Consensus 159 ~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgA 237 (386)
T KOG0737|consen 159 SVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGA 237 (386)
T ss_pred eccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeC
Confidence 99999999999999999999999999999999999999999999 78899999999999999999999998889999999
Q ss_pred cCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhh
Q 000823 1082 TNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLN 1161 (1267)
Q Consensus 1082 TN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~ 1161 (1267)
||+|.+||++++||++++++|++|+..+|.+||+.+++++++++++|+.++|++|+||||+||+
T Consensus 238 TNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLk---------------- 301 (386)
T KOG0737|consen 238 TNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLK---------------- 301 (386)
T ss_pred CCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHH----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhcccccccc
Q 000823 1162 LWSDWLLVYLIVLQNLCVTAAHRPIKEILEKE--KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSES 1239 (1267)
Q Consensus 1162 ~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~--~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~ 1239 (1267)
++|+.|++.++|+++..+ ......+.+...+.+..+..-..++++++||..|++++.+++..+.
T Consensus 302 --------------elC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~ 367 (386)
T KOG0737|consen 302 --------------ELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDA 367 (386)
T ss_pred --------------HHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhh
Confidence 999999999999999986 3333444555566666666667899999999999999999999999
Q ss_pred cchhhhHHHHHhhCCCCCc
Q 000823 1240 VNMSELLQWNELYGEGGSR 1258 (1267)
Q Consensus 1240 ~~~~~~v~W~di~G~~~~r 1258 (1267)
..|....+|++.||++++|
T Consensus 368 t~~~a~~~~~~~~~e~~sr 386 (386)
T KOG0737|consen 368 TRMNALKQWNELYGEGGSR 386 (386)
T ss_pred hhhHHHHHHHhhhccccCC
Confidence 9999999999999999987
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4e-52 Score=523.67 Aligned_cols=538 Identities=28% Similarity=0.454 Sum_probs=418.1
Q ss_pred ccccccccccccchhHHHHHHHHHhhcccCCcccc-cccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEec
Q 000823 423 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAK-YTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 501 (1267)
Q Consensus 423 ~~vsfd~FPYylse~tk~~L~~~~~~hL~~~~~~~-~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~~D~ 501 (1267)
-+++|+++--+ +..+..|.+.+...|+|+++.+ ++ + ...+.|||+||+| ..+++||||||++.+++++.++.
T Consensus 173 ~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~g--i-~~~~giLL~GppG--tGKT~laraia~~~~~~~i~i~~ 245 (733)
T TIGR01243 173 PKVTYEDIGGL--KEAKEKIREMVELPMKHPELFEHLG--I-EPPKGVLLYGPPG--TGKTLLAKAVANEAGAYFISING 245 (733)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--C-CCCceEEEECCCC--CChHHHHHHHHHHhCCeEEEEec
Confidence 46889995544 8889999999988899988653 33 2 3456899999999 89999999999999999877765
Q ss_pred cccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 000823 502 HSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSK 581 (1267)
Q Consensus 502 ~~~~~~~~~~e~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 581 (1267)
..+..
T Consensus 246 ~~i~~--------------------------------------------------------------------------- 250 (733)
T TIGR01243 246 PEIMS--------------------------------------------------------------------------- 250 (733)
T ss_pred HHHhc---------------------------------------------------------------------------
Confidence 33322
Q ss_pred ccccccCCeeEEeccCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceecccCCCCCCCCCCCCCCCCccccccccc
Q 000823 582 NHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTD 661 (1267)
Q Consensus 582 ~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgv~Fd~~~~~~~~l~~~c~~~~~ff~~~~~ 661 (1267)
+|+|
T Consensus 251 ----------~~~g------------------------------------------------------------------ 254 (733)
T TIGR01243 251 ----------KYYG------------------------------------------------------------------ 254 (733)
T ss_pred ----------cccc------------------------------------------------------------------
Confidence 1111
Q ss_pred ccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCc--------chhhHHHHHHhcC--CCcEEEEeec
Q 000823 662 LRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--------DSYSTFKSRLEKL--PDKVIVIGSH 731 (1267)
Q Consensus 662 ~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~g~~--------~~~~~lk~~L~~l--~g~VvvIGst 731 (1267)
+ ....+..+|+.+.. ..|.||||||||.+...+. .+.+.|...|+.+ .+.|+|||++
T Consensus 255 --------~--~~~~l~~lf~~a~~---~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~at 321 (733)
T TIGR01243 255 --------E--SEERLREIFKEAEE---NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGAT 321 (733)
T ss_pred --------H--HHHHHHHHHHHHHh---cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeec
Confidence 1 12256777777766 8899999999999765322 1223344444433 4689999999
Q ss_pred ccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhh
Q 000823 732 THTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 811 (1267)
Q Consensus 732 ~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe 811 (1267)
|+++..|++ |+|+|| |+++++|++|+.++|.+||+.++.
T Consensus 322 n~~~~ld~a-------l~r~gR----------------------------------fd~~i~i~~P~~~~R~~Il~~~~~ 360 (733)
T TIGR01243 322 NRPDALDPA-------LRRPGR----------------------------------FDREIVIRVPDKRARKEILKVHTR 360 (733)
T ss_pred CChhhcCHH-------HhCchh----------------------------------ccEEEEeCCcCHHHHHHHHHHHhc
Confidence 999887777 777888 888999999999999999997665
Q ss_pred hhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCC-------CC-Ccccccccc
Q 000823 812 RDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPE-------AD-PDARLVLSC 883 (1267)
Q Consensus 812 ~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~-------p~-~~~kl~Is~ 883 (1267)
. .....++.....+-.+.||.++||..+|..+.. .++.+.+..... +. ......++.
T Consensus 361 ~----~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~-----------~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~ 425 (733)
T TIGR01243 361 N----MPLAEDVDLDKLAEVTHGFVGADLAALAKEAAM-----------AALRRFIREGKINFEAEEIPAEVLKELKVTM 425 (733)
T ss_pred C----CCCccccCHHHHHHhCCCCCHHHHHHHHHHHHH-----------HHHHHHhhccccccccccccchhcccccccH
Confidence 4 344456666667778899999999998876322 122222211100 00 113345667
Q ss_pred hhHHHHHHHHHHHHHhhHhhhhhccccCCHHHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhc
Q 000823 884 ESIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCK 963 (1267)
Q Consensus 884 ed~~~al~~lq~l~~~~k~lk~~~k~~v~~~e~e~~li~~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~ 963 (1267)
++|..++..+++. . ..+ .. ...+.++|+|++|++.+++.|++.+.+|+.+++.|.+
T Consensus 426 ~df~~Al~~v~ps---~-----------~~~--------~~--~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~ 481 (733)
T TIGR01243 426 KDFMEALKMVEPS---A-----------IRE--------VL--VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEK 481 (733)
T ss_pred HHHHHHHhhcccc---c-----------cch--------hh--ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHh
Confidence 7777665533210 0 000 00 1123579999999999999999999999999999998
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhc
Q 000823 964 GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLG 1043 (1267)
Q Consensus 964 ~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~ 1043 (1267)
.+. ++++++|||||||||||++|+++|++++++|+.++++++.++|+|+++..++.+|..|+..+|+||||||||.|++
T Consensus 482 ~g~-~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~ 560 (733)
T TIGR01243 482 MGI-RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAP 560 (733)
T ss_pred cCC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhc
Confidence 775 4568999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhC
Q 000823 1044 RRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKE 1121 (1267)
Q Consensus 1044 ~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~ 1121 (1267)
.|..........+++++|+..|+++.. ..+++||+|||+++.||++++| ||+..|+|++|+.++|.+||+.++.+.
T Consensus 561 ~r~~~~~~~~~~~~~~~lL~~ldg~~~--~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~ 638 (733)
T TIGR01243 561 ARGARFDTSVTDRIVNQLLTEMDGIQE--LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM 638 (733)
T ss_pred cCCCCCCccHHHHHHHHHHHHhhcccC--CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC
Confidence 886655556678899999999999854 4689999999999999999998 999999999999999999999999988
Q ss_pred CCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000823 1122 DLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAM 1201 (1267)
Q Consensus 1122 ~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~ 1201 (1267)
.+..++++..||+.|+||+|+||. ++|++|++.++++.+........
T Consensus 639 ~~~~~~~l~~la~~t~g~sgadi~------------------------------~~~~~A~~~a~~~~~~~~~~~~~--- 685 (733)
T TIGR01243 639 PLAEDVDLEELAEMTEGYTGADIE------------------------------AVCREAAMAALRESIGSPAKEKL--- 685 (733)
T ss_pred CCCccCCHHHHHHHcCCCCHHHHH------------------------------HHHHHHHHHHHHHHhhhccchhh---
Confidence 888899999999999999999999 99999999999986653211100
Q ss_pred hcCCCCCCCCCCCCCcccCHHHHHHHHHHhcccccccccchhhhHHHHHhhCC
Q 000823 1202 AEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGE 1254 (1267)
Q Consensus 1202 ~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~~~~~~~v~W~di~G~ 1254 (1267)
... .........|+++||.+|+++++||++.+. +..|.+|...||.
T Consensus 686 ~~~-----~~~~~~~~~i~~~~f~~al~~~~ps~~~~~--~~~~~~~~~~~~~ 731 (733)
T TIGR01243 686 EVG-----EEEFLKDLKVEMRHFLEALKKVKPSVSKED--MLRYERLAKELKR 731 (733)
T ss_pred hcc-----cccccccCcccHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhcc
Confidence 000 000112357999999999999999998874 4678899999874
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-50 Score=474.34 Aligned_cols=388 Identities=30% Similarity=0.485 Sum_probs=317.9
Q ss_pred HhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHH
Q 000823 784 LTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWAL 863 (1267)
Q Consensus 784 L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~ 863 (1267)
+..+|..+|.++.|++++|++||+..+.. ......+..-..|..+.|++-.||+.+.... +-++..+|.....
T Consensus 550 i~~~f~~ei~~~~lse~qRl~iLq~y~~~----~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~---s~~~~~~i~~~~l 622 (953)
T KOG0736|consen 550 IQSLFLHEIEVPALSEEQRLEILQWYLNH----LPLNQDVNLKQLARKTSGFSFGDLEALVAHS---SLAAKTRIKNKGL 622 (953)
T ss_pred HHHhhhhhccCCCCCHHHHHHHHHHHHhc----cccchHHHHHHHHHhcCCCCHHHHHHHhcCc---hHHHHHHHHhhcc
Confidence 55668889999999999999999976655 5566677777888999999999999987753 4444445544432
Q ss_pred HhhhccCCCCC-CcccccccchhHHHHHHHHHHHHHhhHhhhhhccccCCHHHHHHHHhcCcCCCCCCCccchhccccHH
Q 000823 864 SHHLMQNPEAD-PDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALEN 942 (1267)
Q Consensus 864 s~~l~~~~~p~-~~~kl~Is~ed~~~al~~lq~l~~~~k~lk~~~k~~v~~~e~e~~li~~ii~~~~~~vt~~DI~Gle~ 942 (1267)
...+....+.. ......++.++|..++..+|.- +. ..+-.|..++|+|+||||+++
T Consensus 623 ~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~-------------------fs----~aiGAPKIPnV~WdDVGGLee 679 (953)
T KOG0736|consen 623 AGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKE-------------------FS----DAIGAPKIPNVSWDDVGGLEE 679 (953)
T ss_pred cccchhccccccccccceecHHHHHHHHHHHHHh-------------------hh----hhcCCCCCCccchhcccCHHH
Confidence 22222111111 2234677888888887755432 22 122334556899999999999
Q ss_pred HHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhccCccHHHHHHHH
Q 000823 943 VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVF 1022 (1267)
Q Consensus 943 vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~Ge~e~~v~~lF 1022 (1267)
+|.++.+.|..|+++|++|..+- ++..|||||||||||||.+|||+|.++..+|+.|..++++.+|+|++|++++.+|
T Consensus 680 vK~eIldTIqlPL~hpeLfssgl--rkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VF 757 (953)
T KOG0736|consen 680 VKTEILDTIQLPLKHPELFSSGL--RKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVF 757 (953)
T ss_pred HHHHHHHHhcCcccChhhhhccc--cccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999998653 3446999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEEccchhhhcCCCCCch-HHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHh--ccccc
Q 000823 1023 SLASKIAPSVIFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRR 1099 (1267)
Q Consensus 1023 ~~A~k~~PsIIfIDEID~L~~~r~~~~~-~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~v 1099 (1267)
+.|+...|||||+||+|+|+++|+..++ ...+.++..+|+.+|||+.......|+||++||+|+.|||+++| |||+.
T Consensus 758 erAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKL 837 (953)
T KOG0736|consen 758 ERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKL 837 (953)
T ss_pred HHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCcccee
Confidence 9999999999999999999999987654 45789999999999999987667899999999999999999999 99999
Q ss_pred ccCCCC-CHHHHHHHHHHHHhhCCCCCcccHHHHHHHcC-CCCHHHHHHHHhhhhhHHHHHhhhhhhhHHHHHHHHHHHH
Q 000823 1100 LMVNLP-DAPNRAKILQVILAKEDLSPDVDFDAIANMTD-GYSGSDLKVIFLSHSLICNVLLLNLWSDWLLVYLIVLQNL 1177 (1267)
Q Consensus 1100 I~~~~P-d~eeR~eIL~~ll~k~~l~~dvdl~~LA~~Te-GySg~DL~~Lv~~a~l~~~vr~~~~l~~~i~~~l~~l~~L 1177 (1267)
+++..+ +.+.+..||+.+.++..+++++|+.+||+.+. .|+|+|+- .|
T Consensus 838 vyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlY------------------------------sL 887 (953)
T KOG0736|consen 838 VYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLY------------------------------SL 887 (953)
T ss_pred EEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHH------------------------------HH
Confidence 999887 67888999999999999999999999999985 89999999 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhcccccccccch
Q 000823 1178 CVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNM 1242 (1267)
Q Consensus 1178 c~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~~~~ 1242 (1267)
|-.|.+.|++|.+..... ...+..........|+|+||.+|+++++||++.....+
T Consensus 888 CSdA~l~AikR~i~~ie~---------g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ 943 (953)
T KOG0736|consen 888 CSDAMLAAIKRTIHDIES---------GTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLR 943 (953)
T ss_pred HHHHHHHHHHHHHHHhhh---------ccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHH
Confidence 999999999987654321 11111223345578999999999999999999764443
No 6
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-46 Score=417.87 Aligned_cols=284 Identities=40% Similarity=0.704 Sum_probs=256.6
Q ss_pred CCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccc
Q 000823 928 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1267)
Q Consensus 928 ~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~ 1007 (1267)
..+.+.|+||.|++++|+-|++.|.+|+..|+.|. ++.+|.++||++||||||||+||+|+|.+.+..|++|+.+.+.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 34569999999999999999999999999999997 5689999999999999999999999999999999999999999
Q ss_pred hhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccC--CCcEEEEEecCCC
Q 000823 1008 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--TERILVLAATNRP 1085 (1267)
Q Consensus 1008 s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~--~~~VlVIaTTN~p 1085 (1267)
++|-|++|+.|+-+|++|+.++|++|||||||.|+.+|++..++++.+++..+||++|||+.... ...|+|+|+||-|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987642 2348999999999
Q ss_pred CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhh
Q 000823 1086 FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSD 1165 (1267)
Q Consensus 1086 ~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~ 1165 (1267)
|+||++++|||..+|++++|+.+.|..+|+..+....+.++++++.||+.++||||+||.
T Consensus 363 WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~-------------------- 422 (491)
T KOG0738|consen 363 WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADIT-------------------- 422 (491)
T ss_pred cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHH--------------------
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhcccccccccchhhh
Q 000823 1166 WLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSEL 1245 (1267)
Q Consensus 1166 ~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~~~~~~~ 1245 (1267)
++|++|++.++|+.+......... .+...+-..+|+++||++|+.+++||++... +..+
T Consensus 423 ----------nvCreAsm~~mRR~i~g~~~~ei~---------~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d--~~k~ 481 (491)
T KOG0738|consen 423 ----------NVCREASMMAMRRKIAGLTPREIR---------QLAKEEPKMPVTNEDFEEALRKVRPSVSAAD--LEKY 481 (491)
T ss_pred ----------HHHHHHHHHHHHHHHhcCCcHHhh---------hhhhhccccccchhhHHHHHHHcCcCCCHHH--HHHH
Confidence 999999999999876543211100 1111222278999999999999999999653 4568
Q ss_pred HHHHHhhCC
Q 000823 1246 LQWNELYGE 1254 (1267)
Q Consensus 1246 v~W~di~G~ 1254 (1267)
.+|.+.||.
T Consensus 482 ekW~~efGS 490 (491)
T KOG0738|consen 482 EKWMDEFGS 490 (491)
T ss_pred HHHHHHhcC
Confidence 899999996
No 7
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-44 Score=436.08 Aligned_cols=455 Identities=32% Similarity=0.482 Sum_probs=365.9
Q ss_pred ceecccCCCCCCCCCCC--CCCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCc
Q 000823 631 IGVRFDKPIPDGVDLGG--QCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS 708 (1267)
Q Consensus 631 vgv~Fd~~~~~~~~l~~--~c~~~~~ff~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~g~~ 708 (1267)
-||.+++|+++|+++.+ .+.....|+...+..++++|.++ .++.+..+|+-+.. ..|.|+|+||++.+.....
T Consensus 19 ~~v~~~g~~~~~~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~---~~~~ii~~d~~~~~~~~~~ 93 (494)
T COG0464 19 KGVLLHGPPGTGKTLLARALANEGAEFLSINGPEILSKYVGE--SELRLRELFEEAEK---LAPSIIFIDEIDALAPKRS 93 (494)
T ss_pred CCceeeCCCCCchhHHHHHHHhccCcccccCcchhhhhhhhH--HHHHHHHHHHHHHH---hCCCeEeechhhhcccCcc
Confidence 37899999999999441 11115445788899999999999 78888888888888 8889999999999887332
Q ss_pred c----hhhHHHHHH----hcC-CCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchh
Q 000823 709 D----SYSTFKSRL----EKL-PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPK 779 (1267)
Q Consensus 709 ~----~~~~lk~~L----~~l-~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~ 779 (1267)
. ....+...| +.+ .+.|+++|+++.++..+++ ++||||
T Consensus 94 ~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~a-------~~~~~~-------------------------- 140 (494)
T COG0464 94 SDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDGLDPA-------KRRPGR-------------------------- 140 (494)
T ss_pred ccccchhhHHHHHHHHhcccccCCceEEEeecCCccccChh-------HhCccc--------------------------
Confidence 2 222233333 222 4569999999999887777 888888
Q ss_pred HHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccchHHHHHHH
Q 000823 780 ATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIV 859 (1267)
Q Consensus 780 ~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv 859 (1267)
|+.++++.+|+.+.+++|++.+... .....++.....+..+.++.++|+..+|.++..
T Consensus 141 --------~~~~~~~~~~~~~~~~ei~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~---------- 198 (494)
T COG0464 141 --------FDREIEVNLPDEAGRLEILQIHTRL----MFLGPPGTGKTLAARTVGKSGADLGALAKEAAL---------- 198 (494)
T ss_pred --------cceeeecCCCCHHHHHHHHHHHHhc----CCCcccccHHHHHHhcCCccHHHHHHHHHHHHH----------
Confidence 8899999999999999999987655 233336667777888999999999998875211
Q ss_pred HHHHHhhhccCCCCCCcccccccchhHHHHHHHHHHHHHhhHhhhhhccccCCHHHHHHHHhcCcCCCCCCCccchhccc
Q 000823 860 GWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGA 939 (1267)
Q Consensus 860 ~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~~lq~l~~~~k~lk~~~k~~v~~~e~e~~li~~ii~~~~~~vt~~DI~G 939 (1267)
.+..+.+ ........++.+++..++..+.. . ..+......++|.|++|
T Consensus 199 -~~~~r~~-----~~~~~~~~~~~~~~~~~l~~~~~-----------------~---------~~~~~~~~~v~~~digg 246 (494)
T COG0464 199 -RELRRAI-----DLVGEYIGVTEDDFEEALKKVLP-----------------S---------RGVLFEDEDVTLDDIGG 246 (494)
T ss_pred -HHHHhhh-----ccCcccccccHHHHHHHHHhcCc-----------------c---------cccccCCCCcceehhhc
Confidence 1111111 01112333444444443331110 0 11223455789999999
Q ss_pred cHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhccCccHHHHH
Q 000823 940 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVK 1019 (1267)
Q Consensus 940 le~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~Ge~e~~v~ 1019 (1267)
++.+++.+++.+..++.+++.|.+.+ .++++++|||||||||||+||+++|++++.+|+.++.++++++|+|+++++++
T Consensus 247 l~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir 325 (494)
T COG0464 247 LEEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIR 325 (494)
T ss_pred HHHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHH
Confidence 99999999999999999999988755 45668999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHh--ccc
Q 000823 1020 AVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLP 1097 (1267)
Q Consensus 1020 ~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd 1097 (1267)
.+|..|++.+||||||||||.|+..|..... ....+++++|+..|+++.. ..+|+||+|||+|+.+|++++| ||+
T Consensus 326 ~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~-~~~~r~~~~lL~~~d~~e~--~~~v~vi~aTN~p~~ld~a~lR~gRfd 402 (494)
T COG0464 326 ELFEKARKLAPSIIFIDEIDSLASGRGPSED-GSGRRVVGQLLTELDGIEK--AEGVLVIAATNRPDDLDPALLRPGRFD 402 (494)
T ss_pred HHHHHHHcCCCcEEEEEchhhhhccCCCCCc-hHHHHHHHHHHHHhcCCCc--cCceEEEecCCCccccCHhhcccCccc
Confidence 9999999999999999999999988865432 2237899999999999875 4679999999999999999999 999
Q ss_pred ccccCCCCCHHHHHHHHHHHHhhCCC--CCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhhHHHHHHHHHH
Q 000823 1098 RRLMVNLPDAPNRAKILQVILAKEDL--SPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDWLLVYLIVLQ 1175 (1267)
Q Consensus 1098 ~vI~~~~Pd~eeR~eIL~~ll~k~~l--~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~~i~~~l~~l~ 1175 (1267)
..|+|++|+.++|.+||+.++..... ..++++..+++.|+||+|+||.
T Consensus 403 ~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~------------------------------ 452 (494)
T COG0464 403 RLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIA------------------------------ 452 (494)
T ss_pred eEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHH------------------------------
Confidence 99999999999999999999996543 5789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhccccc
Q 000823 1176 NLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVS 1236 (1267)
Q Consensus 1176 ~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s 1236 (1267)
.+|++|++.++++.. ...+|++||.+|+++++|++.
T Consensus 453 ~i~~ea~~~~~~~~~-------------------------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 453 ALVREAALEALREAR-------------------------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred HHHHHHHHHHHHHhc-------------------------cCCccHHHHHHHHHhcCCCCC
Confidence 999999999998732 357999999999999999976
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-45 Score=407.63 Aligned_cols=249 Identities=40% Similarity=0.691 Sum_probs=233.4
Q ss_pred CCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccc
Q 000823 928 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1267)
Q Consensus 928 ~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~ 1007 (1267)
..++++++||||+++++++|++.|.+|+.+|++|.+.|+ .||+|||||||||||||+||||+|++.++.|+++..++|+
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI-~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI-DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC-CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 446899999999999999999999999999999999996 5779999999999999999999999999999999999999
Q ss_pred hhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC
Q 000823 1008 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1267)
Q Consensus 1008 s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1267)
.+|+|+....++.+|..|+.+.||||||||||.+.++|... +.....++++-+|+.+|||+.. ..+|-||++||++
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~--~~nvKVI~ATNR~ 300 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP--RGNVKVIMATNRP 300 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC--CCCeEEEEecCCc
Confidence 99999999999999999999999999999999999998654 3445567888889999999976 5789999999999
Q ss_pred CCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhh
Q 000823 1086 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLW 1163 (1267)
Q Consensus 1086 ~~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l 1163 (1267)
+.|||+++| |||+.|+|++|+.+.|.+||+.+.+++++..++|++.||+.++|+||+||+
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlk------------------ 362 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLK------------------ 362 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHH------------------
Confidence 999999999 999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhcccc
Q 000823 1164 SDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASV 1235 (1267)
Q Consensus 1164 ~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~ 1235 (1267)
++|.+|.+.++|+ ....|||+||.+|++++....
T Consensus 363 ------------aictEAGm~AiR~--------------------------~R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 363 ------------AICTEAGMFAIRE--------------------------RRDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred ------------HHHHHHhHHHHHh--------------------------ccCeecHHHHHHHHHHHHhcc
Confidence 9999999999997 346799999999999987654
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-44 Score=416.08 Aligned_cols=299 Identities=33% Similarity=0.577 Sum_probs=261.4
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch
Q 000823 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1267)
Q Consensus 929 ~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s 1008 (1267)
...++|.||||++....+|.+++.. +.+|+.|...|+ .|++|||||||||||||+||+|||.++++||+.|++.++++
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv-~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS 261 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGV-RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS 261 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCC-CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc
Confidence 3478999999999999999999988 999999999885 67799999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccC--CCcEEEEEecCCCC
Q 000823 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--TERILVLAATNRPF 1086 (1267)
Q Consensus 1009 ~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~--~~~VlVIaTTN~p~ 1086 (1267)
.+.|++|+.++.+|+.|+...|||+||||||.+.++|.. .+.+..+++..+|+..||++.... +..|+||++||+|+
T Consensus 262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 999999999999999999999999999999999999876 556777899999999999987653 47899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhh
Q 000823 1087 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWS 1164 (1267)
Q Consensus 1087 ~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~ 1164 (1267)
.||++|+| ||++.|.+..|+..+|.+||+.++++..++.++|+..||++|.||.|+||.
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~------------------- 401 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLM------------------- 401 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHH-------------------
Confidence 99999999 999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcC-----------------------------------CCCC
Q 000823 1165 DWLLVYLIVLQNLCVTAAHRPIKEILEKEKK-ERAAAMAEG-----------------------------------KPAP 1208 (1267)
Q Consensus 1165 ~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~-~~~~a~~e~-----------------------------------~~~~ 1208 (1267)
.||.+|+..++++++..... ....-..++ .+.|
T Consensus 402 -----------AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~ 470 (802)
T KOG0733|consen 402 -----------ALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDP 470 (802)
T ss_pred -----------HHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCC
Confidence 88888888888888764321 000000000 0011
Q ss_pred CCCCCCCCcccCHHHHHHHHHHhcccccccccchhhhHHHHHhhCCCCCccc
Q 000823 1209 ALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSRRK 1260 (1267)
Q Consensus 1209 ~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~~~~~~~v~W~di~G~~~~rk~ 1260 (1267)
.+........|+++||.+|+..++||.-+++...+|.|.|+||||++..|..
T Consensus 471 ~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~e 522 (802)
T KOG0733|consen 471 LSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLE 522 (802)
T ss_pred cChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHH
Confidence 1111123356999999999999999999999999999999999999888753
No 10
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-42 Score=371.79 Aligned_cols=298 Identities=38% Similarity=0.661 Sum_probs=252.3
Q ss_pred CcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEee
Q 000823 923 DVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1267)
Q Consensus 923 ~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~ 1002 (1267)
..|-.+.+.+.|+|+.|++..|+.|++.|.+|++.|++|... ++|.++|||||||||||++||+|+|.+.+..|+.|+
T Consensus 121 sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 121 SAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred hhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 344456779999999999999999999999999999999844 689999999999999999999999999999999999
Q ss_pred ccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEec
Q 000823 1003 MSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT 1082 (1267)
Q Consensus 1003 ~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTT 1082 (1267)
.++|+++|.|++|+.++++|++|+.+.|+||||||||.|++.|. .++.++.+++..+|+++|.|.-. ++..|+|+++|
T Consensus 199 SSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~-enEseasRRIKTEfLVQMqGVG~-d~~gvLVLgAT 276 (439)
T KOG0739|consen 199 SSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRS-ENESEASRRIKTEFLVQMQGVGN-DNDGVLVLGAT 276 (439)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCC-CCchHHHHHHHHHHHHhhhcccc-CCCceEEEecC
Confidence 99999999999999999999999999999999999999988774 46778899999999999999865 57899999999
Q ss_pred CCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhh
Q 000823 1083 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLN 1161 (1267)
Q Consensus 1083 N~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~ 1161 (1267)
|-||.||.+++|||+.+|++++|+...|..+|+.++...... .+.|+.+|+++|+||||+||.
T Consensus 277 NiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDis---------------- 340 (439)
T KOG0739|consen 277 NIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDIS---------------- 340 (439)
T ss_pred CCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceE----------------
Confidence 999999999999999999999999999999999999876533 678999999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhcCCCCCCCCCCC---------------CCcccCH
Q 000823 1162 LWSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAA-----AMAEGKPAPALSGCA---------------DIRPLNM 1221 (1267)
Q Consensus 1162 ~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~-----a~~e~~~~~~~~~~~---------------~~~~Vt~ 1221 (1267)
-++++|.+.++|++-....-.+-. ........|+..+.. -..+|||
T Consensus 341 --------------ivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~ 406 (439)
T KOG0739|consen 341 --------------IVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTM 406 (439)
T ss_pred --------------EEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccH
Confidence 567788888888753321100000 000111223332221 1368999
Q ss_pred HHHHHHHHHhcccccccccchhhhHHHHHhhCCCC
Q 000823 1222 DDFKYAHERVCASVSSESVNMSELLQWNELYGEGG 1256 (1267)
Q Consensus 1222 eDf~~Al~~v~pS~s~~~~~~~~~v~W~di~G~~~ 1256 (1267)
.||.+++...+|++..+... ...+|++-||++|
T Consensus 407 ~D~~k~l~~tkPTvn~~Dl~--k~~~Ft~dFGqEg 439 (439)
T KOG0739|consen 407 RDFLKSLSRTKPTVNEDDLL--KHEKFTEDFGQEG 439 (439)
T ss_pred HHHHHHHhhcCCCCCHHHHH--HHHHHHHhhccCC
Confidence 99999999999999987554 3568999999986
No 11
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-39 Score=384.39 Aligned_cols=439 Identities=26% Similarity=0.385 Sum_probs=329.8
Q ss_pred eecccCCCCCCCC-CC----CCCCCC-cccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc
Q 000823 632 GVRFDKPIPDGVD-LG----GQCEGG-HGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA 705 (1267)
Q Consensus 632 gv~Fd~~~~~~~~-l~----~~c~~~-~~ff~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~ 705 (1267)
.++.++|.|.||+ |+ ..-+-+ +.|++.+..-.+..-..| --+..++..|..... .+|.||++||+|-+++
T Consensus 433 ~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e-~iQk~l~~vfse~~~---~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 433 NILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE-KIQKFLNNVFSEALW---YAPSIIVLDDLDCLAS 508 (952)
T ss_pred cEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH-HHHHHHHHHHHHHHh---hCCcEEEEcchhhhhc
Confidence 5788999999999 33 333433 777777776666544333 122334444444444 9999999999999887
Q ss_pred ------CCcchhhH--------HHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccccc
Q 000823 706 ------GNSDSYST--------FKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLH 771 (1267)
Q Consensus 706 ------g~~~~~~~--------lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~ 771 (1267)
|+...+.. +.....+....|.+|++-.......+- |--
T Consensus 509 ~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~-------L~s--------------------- 560 (952)
T KOG0735|consen 509 ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPL-------LVS--------------------- 560 (952)
T ss_pred cCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChh-------hcC---------------------
Confidence 22222211 111112334567888886655422111 111
Q ss_pred ccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccc
Q 000823 772 DRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLT 851 (1267)
Q Consensus 772 ~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls 851 (1267)
..+|.-++.++.|+.+.|..||+....+ ++.+..+-++.-.+.++-||..-||.-+
T Consensus 561 -------------~~~Fq~~~~L~ap~~~~R~~IL~~~~s~---~~~~~~~~dLd~ls~~TEGy~~~DL~if-------- 616 (952)
T KOG0735|consen 561 -------------PLLFQIVIALPAPAVTRRKEILTTIFSK---NLSDITMDDLDFLSVKTEGYLATDLVIF-------- 616 (952)
T ss_pred -------------ccceEEEEecCCcchhHHHHHHHHHHHh---hhhhhhhHHHHHHHHhcCCccchhHHHH--------
Confidence 1258788889999999999999965443 1111111122225667778888887543
Q ss_pred hHHHHHHHHHHHHhhhccCCCCCCcccccccchhHHHHHHHHHHHHHhhHhhhhhccccCCHHHHHHHHhcCcCCCCCCC
Q 000823 852 NESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIG 931 (1267)
Q Consensus 852 ~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~~lq~l~~~~k~lk~~~k~~v~~~e~e~~li~~ii~~~~~~ 931 (1267)
++.++-.|.- +.+.+....++.++|..++..+.+..-. ++---...+
T Consensus 617 ---VeRai~~a~l-------eris~~~klltke~f~ksL~~F~P~aLR-----------------------~ik~~k~tg 663 (952)
T KOG0735|consen 617 ---VERAIHEAFL-------ERISNGPKLLTKELFEKSLKDFVPLALR-----------------------GIKLVKSTG 663 (952)
T ss_pred ---HHHHHHHHHH-------HHhccCcccchHHHHHHHHHhcChHHhh-----------------------hccccccCC
Confidence 2334333331 1112222378889999888766543211 111111224
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhcc
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1011 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~ 1011 (1267)
+.|+||+|+.++++.|++.+++|.++|..|....++.+ .|||||||||||||+||.|+|...++.||.+..++++++|+
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~-~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLR-TGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccc-cceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 78999999999999999999999999999998776544 79999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHH
Q 000823 1012 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEA 1091 (1267)
Q Consensus 1012 Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~a 1091 (1267)
|.+|.+++.+|+.|+...|||||+||+|+++++|+... .....++.|+|+.+|||...- ..|.|+|+|.+|+.+||+
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs-TGVTDRVVNQlLTelDG~Egl--~GV~i~aaTsRpdliDpA 819 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS-TGVTDRVVNQLLTELDGAEGL--DGVYILAATSRPDLIDPA 819 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC-CCchHHHHHHHHHhhcccccc--ceEEEEEecCCccccCHh
Confidence 99999999999999999999999999999999986543 345689999999999998663 579999999999999999
Q ss_pred HHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhhHHHH
Q 000823 1092 VIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDWLLV 1169 (1267)
Q Consensus 1092 Llr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~~i~~ 1169 (1267)
++| |+|+.++.+.|+..+|.+|++.+.....+..++|++-+|.+|+||+|+||.
T Consensus 820 LLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq------------------------ 875 (952)
T KOG0735|consen 820 LLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQ------------------------ 875 (952)
T ss_pred hcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHH------------------------
Confidence 999 999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000823 1170 YLIVLQNLCVTAAHRPIKEILEKE 1193 (1267)
Q Consensus 1170 ~l~~l~~Lc~~Aa~~aire~l~~~ 1193 (1267)
.||..|.+.++++++...
T Consensus 876 ------~ll~~A~l~avh~~l~~~ 893 (952)
T KOG0735|consen 876 ------SLLYNAQLAAVHEILKRE 893 (952)
T ss_pred ------HHHHHHHHHHHHHHHHhc
Confidence 888999999998877654
No 12
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-41 Score=383.93 Aligned_cols=432 Identities=19% Similarity=0.231 Sum_probs=332.8
Q ss_pred eecccCCCCCCCCCC--------CCCCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhcc-----CCCeEEEEc
Q 000823 632 GVRFDKPIPDGVDLG--------GQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESR-----SCPFILFMK 698 (1267)
Q Consensus 632 gv~Fd~~~~~~~~l~--------~~c~~~~~ff~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~-----~~p~ILfi~ 698 (1267)
|++.-+||||||||- +--+.-+ --|--+|+|+||| .+--|+.||.-+.++-+ .+=-||.||
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKI----VNGPeIL~KYVGe--SE~NvR~LFaDAEeE~r~~g~~SgLHIIIFD 331 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKI----VNGPEILNKYVGE--SEENVRKLFADAEEEQRRLGANSGLHIIIFD 331 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcc----cCcHHHHHHhhcc--cHHHHHHHHHhHHHHHHhhCccCCceEEEeh
Confidence 677888999999943 2222222 2467789999999 88899999999876644 234599999
Q ss_pred chhhhhc------CCcchhhHHHHHH-hcCCC-----cEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCc
Q 000823 699 DAEKSIA------GNSDSYSTFKSRL-EKLPD-----KVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDS 766 (1267)
Q Consensus 699 di~~~l~------g~~~~~~~lk~~L-~~l~g-----~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~ 766 (1267)
|||.+.. |+...++.+.+.| .+.+| ||+|||+||+.|-+||| |-||||
T Consensus 332 EiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEA-------LLRPGR------------- 391 (744)
T KOG0741|consen 332 EIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEA-------LLRPGR------------- 391 (744)
T ss_pred hhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHH-------hcCCCc-------------
Confidence 9998663 7788899998888 34444 99999999999988888 888888
Q ss_pred cccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceecc
Q 000823 767 FGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIR 846 (1267)
Q Consensus 767 ~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~ 846 (1267)
|++++||.|||+++|++||++|+.+|.++-.+..||+..+.+..++||+||+|++|+..
T Consensus 392 ---------------------lEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 392 ---------------------LEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred ---------------------eEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999998776
Q ss_pred ccccchHHHHHHHHHHHHhhhccC----CCCCCcccccccchhHHHHHHHHHHHHHhhHhhhhhccccCCHHHHHHHHhc
Q 000823 847 DQSLTNESAEKIVGWALSHHLMQN----PEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLA 922 (1267)
Q Consensus 847 d~~ls~~aIe~iv~~A~s~~l~~~----~~p~~~~kl~Is~ed~~~al~~lq~l~~~~k~lk~~~k~~v~~~e~e~~li~ 922 (1267)
+..+|..+++... .+|...++++|+++||.+++..+++.+. +++++++.++..
T Consensus 451 -----------A~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG------------~see~l~~~~~~ 507 (744)
T KOG0741|consen 451 -----------AQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFG------------ISEEDLERFVMN 507 (744)
T ss_pred -----------HHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccC------------CCHHHHHHHHhC
Confidence 6667788887655 2345668999999999999996666554 578899999989
Q ss_pred CcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEee
Q 000823 923 DVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1267)
Q Consensus 923 ~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~ 1002 (1267)
+++.+.... ..+.+.-..++. +.+.++ ..+..++||+||||+|||+||..+|...++||+++-
T Consensus 508 Gmi~~g~~v---------~~il~~G~llv~-qvk~s~-------~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKii 570 (744)
T KOG0741|consen 508 GMINWGPPV---------TRILDDGKLLVQ-QVKNSE-------RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKII 570 (744)
T ss_pred CceeecccH---------HHHHhhHHHHHH-Hhhccc-------cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEe
Confidence 998876421 233333333333 233222 456689999999999999999999999999999965
Q ss_pred cc-ccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEe
Q 000823 1003 MS-SITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 1081 (1267)
Q Consensus 1003 ~s-eL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaT 1081 (1267)
.+ ++++......-.+++.+|+.|++++-+||++|+|++|+.. .+....+.+.+++.|++++...+++ +++++|++|
T Consensus 571 Spe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~--vpIGPRfSN~vlQaL~VllK~~ppk-g~kLli~~T 647 (744)
T KOG0741|consen 571 SPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY--VPIGPRFSNLVLQALLVLLKKQPPK-GRKLLIFGT 647 (744)
T ss_pred ChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc--cccCchhhHHHHHHHHHHhccCCCC-CceEEEEec
Confidence 54 4443332333458899999999999999999999999843 4566788899999999999998875 679999999
Q ss_pred cCCCCCCcH-HHHhcccccccCCCCCH-HHHHHHHHHHHhhCCCCCcccHHHHHHHcCC-CCHHHHHHHHhhhhhHHHH
Q 000823 1082 TNRPFDLDE-AVIRRLPRRLMVNLPDA-PNRAKILQVILAKEDLSPDVDFDAIANMTDG-YSGSDLKVIFLSHSLICNV 1157 (1267)
Q Consensus 1082 TN~p~~Ld~-aLlrRFd~vI~~~~Pd~-eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeG-ySg~DL~~Lv~~a~l~~~v 1157 (1267)
|.+...|.+ .++..|+..+++|..+. ++..+++... ++..+.+...++....+ ...--|++++.-.+++++.
T Consensus 648 TS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~----n~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~q~ 722 (744)
T KOG0741|consen 648 TSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL----NIFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMARQD 722 (744)
T ss_pred ccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc----cCCCcchhHHHHHHHhccccchhHHHHHHHHHHHhcc
Confidence 998777765 67789999999877654 6666665543 33334444444443322 2334466666665555543
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=4.1e-36 Score=359.89 Aligned_cols=411 Identities=20% Similarity=0.343 Sum_probs=295.5
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcCCcchhhHHHHH---HhcCCCcEEEEeecccCCCccccCCCCCccccccC
Q 000823 676 LINTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSR---LEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFG 752 (1267)
Q Consensus 676 ~i~~L~ev~~~~~~~~p~ILfi~di~~~l~g~~~~~~~lk~~---L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~g 752 (1267)
.+++|- .+......+|.|+.++|+|.++. +......|+.. +...+..|||++....
T Consensus 67 p~~al~-~i~~~~~~~~~~~vl~d~h~~~~-~~~~~r~l~~l~~~~~~~~~~~i~~~~~~~------------------- 125 (489)
T CHL00195 67 PLQALE-FIEKLTPETPALFLLKDFNRFLN-DISISRKLRNLSRILKTQPKTIIIIASELN------------------- 125 (489)
T ss_pred HHHHHH-HHHhcCCCCCcEEEEecchhhhc-chHHHHHHHHHHHHHHhCCCEEEEEcCCCC-------------------
Confidence 555553 44444445689999999999883 33343444432 2334567777776432
Q ss_pred CchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHHhhh
Q 000823 753 SNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGR 832 (1267)
Q Consensus 753 r~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~vL~~ 832 (1267)
+|.. |.+.+ ..++++||+.++...+++..... ..
T Consensus 126 ----------~p~e-----------------l~~~~-~~~~~~lP~~~ei~~~l~~~~~~----~~-------------- 159 (489)
T CHL00195 126 ----------IPKE-----------------LKDLI-TVLEFPLPTESEIKKELTRLIKS----LN-------------- 159 (489)
T ss_pred ----------CCHH-----------------HHhce-eEEeecCcCHHHHHHHHHHHHHh----cC--------------
Confidence 2222 33334 68899999999998888654321 00
Q ss_pred cCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccccchhHHHHHHHHHHHHHhhHhhhhhccccCC
Q 000823 833 SGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVT 912 (1267)
Q Consensus 833 ~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~~lq~l~~~~k~lk~~~k~~v~ 912 (1267)
..++..+++.++.....++...++.+...+...+ ..++.+++...+.....+
T Consensus 160 ~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~------------~~~~~~~~~~i~~~k~q~---------------- 211 (489)
T CHL00195 160 IKIDSELLENLTRACQGLSLERIRRVLSKIIATY------------KTIDENSIPLILEEKKQI---------------- 211 (489)
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc------------CCCChhhHHHHHHHHHHH----------------
Confidence 0123344444444445555555555544433211 112333333222211110
Q ss_pred HHHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 000823 913 ENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 992 (1267)
Q Consensus 913 ~~e~e~~li~~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~ 992 (1267)
+.+ .+++......++|+|++|++.+|+.|++..... .......++ .+++++||+||||||||++|+++|+
T Consensus 212 ---~~~---~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 212 ---ISQ---TEILEFYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred ---Hhh---hccccccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHHH
Confidence 000 122222334678999999999999998765321 122233443 4669999999999999999999999
Q ss_pred HhCCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccC
Q 000823 993 EAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1072 (1267)
Q Consensus 993 elg~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~ 1072 (1267)
+++.+|+.++++.+.++++|+++..++++|..|+..+||||||||||.++..+...+......+++++|+..|+..
T Consensus 282 e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~---- 357 (489)
T CHL00195 282 DWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK---- 357 (489)
T ss_pred HhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----
Confidence 9999999999999999999999999999999999999999999999999876555455566788899998888752
Q ss_pred CCcEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCC--CcccHHHHHHHcCCCCHHHHHHHH
Q 000823 1073 TERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLS--PDVDFDAIANMTDGYSGSDLKVIF 1148 (1267)
Q Consensus 1073 ~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~--~dvdl~~LA~~TeGySg~DL~~Lv 1148 (1267)
..+++||+|||+++.||++++| ||+.+|+|+.|+.++|.+||+.++.+.... .+.+++.||+.|+||||+||+
T Consensus 358 ~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~--- 434 (489)
T CHL00195 358 KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIE--- 434 (489)
T ss_pred CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHH---
Confidence 4679999999999999999998 999999999999999999999999886533 478999999999999999999
Q ss_pred hhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHH
Q 000823 1149 LSHSLICNVLLLNLWSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAH 1228 (1267)
Q Consensus 1149 ~~a~l~~~vr~~~~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al 1228 (1267)
++|.+|+..++.+ .+.++.+||..|+
T Consensus 435 ---------------------------~lv~eA~~~A~~~---------------------------~~~lt~~dl~~a~ 460 (489)
T CHL00195 435 ---------------------------QSIIEAMYIAFYE---------------------------KREFTTDDILLAL 460 (489)
T ss_pred ---------------------------HHHHHHHHHHHHc---------------------------CCCcCHHHHHHHH
Confidence 8888888766532 1569999999999
Q ss_pred HHhcccccccccchhhhHHHHHhh
Q 000823 1229 ERVCASVSSESVNMSELLQWNELY 1252 (1267)
Q Consensus 1229 ~~v~pS~s~~~~~~~~~v~W~di~ 1252 (1267)
+++.|......-....+++|...+
T Consensus 461 ~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 461 KQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred HhcCCCcccCHHHHHHHHHHHHcC
Confidence 999998765544456788998754
No 14
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=380.88 Aligned_cols=382 Identities=22% Similarity=0.262 Sum_probs=296.1
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhc-----C-CcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCcccc
Q 000823 676 LINTLFEVVFSESRSCPFILFMKDAEKSIA-----G-NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFT 749 (1267)
Q Consensus 676 ~i~~L~ev~~~~~~~~p~ILfi~di~~~l~-----g-~~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~ 749 (1267)
+=++|..|+.++.+..++||||||||++++ | ++|+.|+|||+| .+|.+.||||||..+|++
T Consensus 247 FEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL--ARGeL~~IGATT~~EYRk----------- 313 (786)
T COG0542 247 FEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL--ARGELRCIGATTLDEYRK----------- 313 (786)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH--hcCCeEEEEeccHHHHHH-----------
Confidence 457788888888888899999999999998 3 499999999999 559999999999999643
Q ss_pred ccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHH
Q 000823 750 KFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTV 829 (1267)
Q Consensus 750 r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~v 829 (1267)
+|.+ |.||.||| ++|.|.+|+.+..+.||++..++ |..+|+|.+...|
T Consensus 314 ----------------~iEK-----------D~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~----yE~hH~V~i~D~A 361 (786)
T COG0542 314 ----------------YIEK-----------DAALERRF-QKVLVDEPSVEDTIAILRGLKER----YEAHHGVRITDEA 361 (786)
T ss_pred ----------------Hhhh-----------chHHHhcC-ceeeCCCCCHHHHHHHHHHHHHH----HHHccCceecHHH
Confidence 3444 99999999 99999999999999999999888 8999999999999
Q ss_pred hhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccc--c----------ccchhHHHHHHHHHHHH
Q 000823 830 LGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARL--V----------LSCESIQYGIGIFQAIQ 897 (1267)
Q Consensus 830 L~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl--~----------Is~ed~~~al~~lq~l~ 897 (1267)
+.+ ++.|+..|+.++++|++||+.++..|+...+... .|..-..+ . +..+.-+.+...+..+.
T Consensus 362 l~a----Av~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~ 436 (786)
T COG0542 362 LVA----AVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEELDELERELAQLEIEKEALEREQDEKEKKLIDEII 436 (786)
T ss_pred HHH----HHHHHHhhcccCCCCchHHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 998 4999999999999999999999999998877655 44321110 0 00000001111111100
Q ss_pred Hh----hHhhhhhccccCCHHHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhc---------C
Q 000823 898 NE----SKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCK---------G 964 (1267)
Q Consensus 898 ~~----~k~lk~~~k~~v~~~e~e~~li~~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~---------~ 964 (1267)
.. ...+...+...++.+++.. +++.++.++...+.-.+..-+-++.+.|++.|.+|..+.+...+ .
T Consensus 437 ~~~~~~~~~~~~~~~~~v~~~~Ia~-vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~ 515 (786)
T COG0542 437 KLKEGRIPELEKELEAEVDEDDIAE-VVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLG 515 (786)
T ss_pred HHhhhhhhhHHHHHhhccCHHHHHH-HHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCC
Confidence 00 0000000000155666665 66778777766666666666666777777777666555544332 3
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CceEEeecccc-----chhccCccHHHH-----HHHHHHHHhcCCe
Q 000823 965 QLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSI-----TSKWFGEGEKYV-----KAVFSLASKIAPS 1031 (1267)
Q Consensus 965 ~~~kP~~gVLL~GPpGTGKT~LAkALA~elg---~~fi~I~~seL-----~s~~~Ge~e~~v-----~~lF~~A~k~~Ps 1031 (1267)
..++|..++||.||+|+|||.||++||..+. -.++++||+++ +++.+|.+++|| ..+.+..++.++|
T Consensus 516 dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PyS 595 (786)
T COG0542 516 DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYS 595 (786)
T ss_pred CCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCe
Confidence 4477888999999999999999999999994 88999999998 567899999988 4488888999999
Q ss_pred EEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCC-------CcEEEEEecCCC-------------------
Q 000823 1032 VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT-------ERILVLAATNRP------------------- 1085 (1267)
Q Consensus 1032 IIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~-------~~VlVIaTTN~p------------------- 1085 (1267)
||+||||| +++.++++.|++.||....+++ .+.+||+|||--
T Consensus 596 ViLlDEIE------------KAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~ 663 (786)
T COG0542 596 VILLDEIE------------KAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEAL 663 (786)
T ss_pred EEEechhh------------hcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhH
Confidence 99999998 6789999999999998776654 578999999951
Q ss_pred ---------CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000823 1086 ---------FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1120 (1267)
Q Consensus 1086 ---------~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k 1120 (1267)
..+.|+|++|++.+|.|...+.+...+|+...+..
T Consensus 664 ~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 664 KEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred HHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 13458999999999999999999999999988865
No 15
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-37 Score=353.13 Aligned_cols=271 Identities=38% Similarity=0.590 Sum_probs=237.0
Q ss_pred CCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeecc
Q 000823 925 IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1004 (1267)
Q Consensus 925 i~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~s 1004 (1267)
.+.....++|+|+.|.++.|++|++.|.. ++.|+.|.+.+. +-|+||||+||||||||+||||+|.+.+.||+....+
T Consensus 294 ~p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGG-KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGS 371 (752)
T KOG0734|consen 294 DPEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGG-KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGS 371 (752)
T ss_pred ChhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccC-cCCCceEEeCCCCCchhHHHHHhhcccCCCeEecccc
Confidence 33334579999999999999999999985 999999999874 4459999999999999999999999999999999999
Q ss_pred ccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC
Q 000823 1005 SITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1084 (1267)
Q Consensus 1005 eL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~ 1084 (1267)
++-..++|...+.|+.+|..|++.+||||||||||.+.++|.....+ ..+..+|+|+..|||+.. +..||||++||.
T Consensus 372 EFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~q--NeGiIvigATNf 448 (752)
T KOG0734|consen 372 EFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQ--NEGIIVIGATNF 448 (752)
T ss_pred chhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCc--CCceEEEeccCC
Confidence 99999999999999999999999999999999999999998765555 889999999999999976 578999999999
Q ss_pred CCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhh
Q 000823 1085 PFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNL 1162 (1267)
Q Consensus 1085 p~~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~ 1162 (1267)
|+.||++|.| |||++|.++.||...|.+||+.++.+..+..++|+..||+-|.||+|+||.
T Consensus 449 pe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLa----------------- 511 (752)
T KOG0734|consen 449 PEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLA----------------- 511 (752)
T ss_pred hhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHH-----------------
Confidence 9999999999 999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhcccccccccch
Q 000823 1163 WSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNM 1242 (1267)
Q Consensus 1163 l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~~~~ 1242 (1267)
||+..||..+..+ ....|+|.|++.|..++.-..-+.+...
T Consensus 512 -------------NlVNqAAlkAa~d--------------------------ga~~VtM~~LE~akDrIlMG~ERks~~i 552 (752)
T KOG0734|consen 512 -------------NLVNQAALKAAVD--------------------------GAEMVTMKHLEFAKDRILMGPERKSMVI 552 (752)
T ss_pred -------------HHHHHHHHHHHhc--------------------------CcccccHHHHhhhhhheeeccccccccc
Confidence 8888888776543 3357999999999998876655554433
Q ss_pred hhhHHHHHhhCCCC
Q 000823 1243 SELLQWNELYGEGG 1256 (1267)
Q Consensus 1243 ~~~v~W~di~G~~~ 1256 (1267)
.+.-+-.--|=++|
T Consensus 553 ~~eak~~TAyHE~G 566 (752)
T KOG0734|consen 553 DEEAKKITAYHEGG 566 (752)
T ss_pred ChhhhhhhhhhccC
Confidence 33333333344444
No 16
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-36 Score=345.85 Aligned_cols=280 Identities=46% Similarity=0.798 Sum_probs=252.8
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch
Q 000823 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1267)
Q Consensus 929 ~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s 1008 (1267)
...+.|+|+.|++.+++.+.+++.+|+.+++.|.. +..|.+++||+||||+|||+|++|||.+.+..|..+++++|.+
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~g--lr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLG--LREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhc--cccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 34689999999999999999999999999999974 4678899999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCC
Q 000823 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL 1088 (1267)
Q Consensus 1009 ~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~L 1088 (1267)
+|+|+.++.++.+|..|+..+|+||||||||.++..| .+..++..+++..+|+..+++.......+|+||+|||+|+.+
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~ 303 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL 303 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHH
Confidence 9999999999999999999999999999999999999 667788889999999999999998888899999999999999
Q ss_pred cHHHHhcccccccCCCCCHHHHHHHHHHHHhhCC-CCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhhHH
Q 000823 1089 DEAVIRRLPRRLMVNLPDAPNRAKILQVILAKED-LSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDWL 1167 (1267)
Q Consensus 1089 d~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~-l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~~i 1167 (1267)
|++++|||..++++++|+.+.|..+++.++.+.+ ...+.+++.|+++|+||+++||.
T Consensus 304 Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~---------------------- 361 (428)
T KOG0740|consen 304 DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDIT---------------------- 361 (428)
T ss_pred HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHH----------------------
Confidence 9999999999999999999999999999998873 33678899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhcccccccccchhhhHH
Q 000823 1168 LVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQ 1247 (1267)
Q Consensus 1168 ~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~~~~~~~v~ 1247 (1267)
++|.+|++.++++.......+ -......++++..||+.|++.++|+++.... .-+..
T Consensus 362 --------~l~kea~~~p~r~~~~~~~~~-------------~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l--~~~~~ 418 (428)
T KOG0740|consen 362 --------ALCKEAAMGPLRELGGTTDLE-------------FIDADKIRPITYPDFKNAFKNIKPSVSLEGL--EKYEK 418 (428)
T ss_pred --------HHHHHhhcCchhhcccchhhh-------------hcchhccCCCCcchHHHHHHhhccccCcccc--chhHH
Confidence 999999999998754321110 0123456899999999999999999999855 45789
Q ss_pred HHHhhCCCC
Q 000823 1248 WNELYGEGG 1256 (1267)
Q Consensus 1248 W~di~G~~~ 1256 (1267)
|+..+|...
T Consensus 419 ~~~~fg~~~ 427 (428)
T KOG0740|consen 419 WDKEFGSSE 427 (428)
T ss_pred Hhhhhcccc
Confidence 999999754
No 17
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-34 Score=308.44 Aligned_cols=248 Identities=37% Similarity=0.633 Sum_probs=228.7
Q ss_pred CCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccc
Q 000823 926 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1005 (1267)
Q Consensus 926 ~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~se 1005 (1267)
+-+.+++++.|++|++-.|+++++.+.+|+.+.++|.+.++ .|++|+|+|||||||||+||+|+|+.....|+++..++
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigi-dpprgvllygppg~gktml~kava~~t~a~firvvgse 224 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGI-DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 224 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCC-CCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHH
Confidence 34557899999999999999999999999999999999986 56799999999999999999999999999999999999
Q ss_pred cchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCCcEEEEEecC
Q 000823 1006 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1083 (1267)
Q Consensus 1006 L~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1083 (1267)
++.+|.|+.+..++.+|..|+.+.|+||||||||.+..+|... +......+++-+|+.+|||+.. ..++-||++||
T Consensus 225 fvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq--~~nvkvimatn 302 (408)
T KOG0727|consen 225 FVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ--TTNVKVIMATN 302 (408)
T ss_pred HHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc--ccceEEEEecC
Confidence 9999999999999999999999999999999999999888653 3345567899999999999975 57899999999
Q ss_pred CCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhh
Q 000823 1084 RPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLN 1161 (1267)
Q Consensus 1084 ~p~~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~ 1161 (1267)
+.+.|||+++| |+|+.|+|++|+..+++-+|..+..++++.+++|++.+..+-+..||+||.
T Consensus 303 radtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~---------------- 366 (408)
T KOG0727|consen 303 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADIN---------------- 366 (408)
T ss_pred cccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHH----------------
Confidence 99999999999 999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhc
Q 000823 1162 LWSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1232 (1267)
Q Consensus 1162 ~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~ 1232 (1267)
.+|++|.+.++|+ ..-.|...||++|.+.+.
T Consensus 367 --------------aicqeagm~avr~--------------------------nryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 367 --------------AICQEAGMLAVRE--------------------------NRYVVLQKDFEKAYKTVV 397 (408)
T ss_pred --------------HHHHHHhHHHHHh--------------------------cceeeeHHHHHHHHHhhc
Confidence 9999999999986 123588899999988654
No 18
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-34 Score=311.01 Aligned_cols=245 Identities=33% Similarity=0.592 Sum_probs=225.5
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch
Q 000823 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1267)
Q Consensus 929 ~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s 1008 (1267)
.+.-+++||+|++.++++|.+.+.+|+.+++.|.+.++ +|++|+|+|||||||||.+|+|.|.+.+..|+.+..+.++.
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 34568999999999999999999999999999999885 57799999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCc--hHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000823 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1267)
Q Consensus 1009 ~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1267)
.|+|...+.++..|..|+...|+||||||+|.+..+|.... ......+.+-+|+.++||+.. ..+|-||++||+.+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss--~~~vKviAATNRvD 321 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS--DDRVKVIAATNRVD 321 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC--ccceEEEeeccccc
Confidence 99999999999999999999999999999999998886532 233456677789999999986 47899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhh
Q 000823 1087 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWS 1164 (1267)
Q Consensus 1087 ~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~ 1164 (1267)
.|||+++| |+++.|+||.|+.+.|..|++.+.+++++..|+++++||+-|++|.|++++
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcK------------------- 382 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCK------------------- 382 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhhe-------------------
Confidence 99999999 999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhc
Q 000823 1165 DWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1232 (1267)
Q Consensus 1165 ~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~ 1232 (1267)
.+|.+|.+.++|+ +...|+-+||.+++..++
T Consensus 383 -----------AVcVEAGMiALRr--------------------------~atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 383 -----------AVCVEAGMIALRR--------------------------GATEVTHEDFMEGILEVQ 413 (424)
T ss_pred -----------eeehhhhHHHHhc--------------------------ccccccHHHHHHHHHHHH
Confidence 9999999999987 335799999999988765
No 19
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-34 Score=306.11 Aligned_cols=249 Identities=35% Similarity=0.600 Sum_probs=227.6
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch
Q 000823 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1267)
Q Consensus 929 ~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s 1008 (1267)
.++.+++=++|++.+++++++.+.+|.++|++|...++..| +|+|||||||+|||.||+|+|+...+.|++++.++++.
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP-KGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC-cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 34678889999999999999999999999999999998776 89999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC--CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000823 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1267)
Q Consensus 1009 ~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~--~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1267)
+|+|+....++.+|-+|+.++|+|||.||||++...|.. .+......+.+-+|+.++||+.. ..++-||++||+.+
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea--tknikvimatnrid 297 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA--TKNIKVIMATNRID 297 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc--ccceEEEEeccccc
Confidence 999999999999999999999999999999999877643 23344556777789999999976 47899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhh
Q 000823 1087 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWS 1164 (1267)
Q Consensus 1087 ~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~ 1164 (1267)
.||++++| |+|+.|+||.|+.+.|.+||+.+-++.++...+++..+|....|.||++++
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk------------------- 358 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVK------------------- 358 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhh-------------------
Confidence 99999999 999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhccccc
Q 000823 1165 DWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVS 1236 (1267)
Q Consensus 1165 ~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s 1236 (1267)
.+|.+|.+.++|+ -...||.|||+-|+.++..--+
T Consensus 359 -----------~vcteagm~alre--------------------------rrvhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 359 -----------GVCTEAGMYALRE--------------------------RRVHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred -----------hhhhhhhHHHHHH--------------------------hhccccHHHHHHHHHHHHhccc
Confidence 9999999999987 1246999999999998865433
No 20
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-35 Score=315.25 Aligned_cols=246 Identities=37% Similarity=0.629 Sum_probs=226.4
Q ss_pred CCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchh
Q 000823 930 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1009 (1267)
Q Consensus 930 ~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~ 1009 (1267)
+.-++.||+|++.+++++++.+.+|+.+|+.|...++ +|+++|+|||+||||||.||+|+|+...+.|+++..++++.+
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGi-kpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGI-KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC-CCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 3568999999999999999999999999999999885 677999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC--CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCC
Q 000823 1010 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1087 (1267)
Q Consensus 1010 ~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~--~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~ 1087 (1267)
|.|+.++.++++|..|..++|+|+||||||.+..+|.. .+......+.+-+|+.++||+.. ...|-||++||+.+.
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds--rgDvKvimATnrie~ 336 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNRIET 336 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc--cCCeEEEEecccccc
Confidence 99999999999999999999999999999999988854 33445556667789999999976 578999999999999
Q ss_pred CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhh
Q 000823 1088 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSD 1165 (1267)
Q Consensus 1088 Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~ 1165 (1267)
|||+++| |+|+.|.|+.|+...+++||..+..++.+..+++++.+...-+.+||+||+
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIk-------------------- 396 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIK-------------------- 396 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHH--------------------
Confidence 9999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhccc
Q 000823 1166 WLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCAS 1234 (1267)
Q Consensus 1166 ~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS 1234 (1267)
.+|.+|.+.++|+- ...|+++||++|.+.+.-+
T Consensus 397 ----------AictEaGllAlRer--------------------------Rm~vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 397 ----------AICTEAGLLALRER--------------------------RMKVTMEDFKKAKEKVLYK 429 (440)
T ss_pred ----------HHHHHHhHHHHHHH--------------------------HhhccHHHHHHHHHHHHHh
Confidence 99999999999871 2469999999999987543
No 21
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=5.3e-34 Score=306.15 Aligned_cols=244 Identities=31% Similarity=0.511 Sum_probs=214.7
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhc
Q 000823 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1010 (1267)
Q Consensus 931 ~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~ 1010 (1267)
+++++|++|+++.|+..+-++. .+.+|+.|... .+++||||||||||||++|+|+|++++.+|+.+.+.++++.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~W----APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIME-YLENPERFGDW----APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHH-HhhChHHhccc----CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 5789999999999988765544 58889988754 358999999999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcH
Q 000823 1011 FGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDE 1090 (1267)
Q Consensus 1011 ~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~ 1090 (1267)
+|.....++.+|+.|++.+|||+||||+|.+.-.|.-+.-..-...+.|.|+..|||+. .+..|+.||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--ENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999997655443333344578999999999997 4678999999999999999
Q ss_pred HHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhhHHHHH
Q 000823 1091 AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDWLLVY 1170 (1267)
Q Consensus 1091 aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~~i~~~ 1170 (1267)
++++||...|+|.+|+.++|.+|++.++++..+.-+.++..++..|.|+||+||+
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdik------------------------- 324 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIK------------------------- 324 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHH-------------------------
Confidence 9999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhccccc
Q 000823 1171 LIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVS 1236 (1267)
Q Consensus 1171 l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s 1236 (1267)
..+...|-++++.+ +...|+.+||++|+++-++...
T Consensus 325 ----ekvlK~aLh~Ai~e--------------------------d~e~v~~edie~al~k~r~~r~ 360 (368)
T COG1223 325 ----EKVLKTALHRAIAE--------------------------DREKVEREDIEKALKKERKRRA 360 (368)
T ss_pred ----HHHHHHHHHHHHHh--------------------------chhhhhHHHHHHHHHhhccccC
Confidence 24566666666654 3356899999999998777654
No 22
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-33 Score=342.42 Aligned_cols=251 Identities=42% Similarity=0.696 Sum_probs=230.1
Q ss_pred CCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeecccc
Q 000823 927 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1006 (1267)
Q Consensus 927 ~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL 1006 (1267)
..+.+++|.|+.|.+++|++|+|+|.. |++|+.|.+.+ .+.|+|+||+||||||||.||+|+|.+.++||+.++.+++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEF 380 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEF 380 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHH
Confidence 445679999999999999999999985 99999999988 4667999999999999999999999999999999999999
Q ss_pred chhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCC---CCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecC
Q 000823 1007 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE---NPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1083 (1267)
Q Consensus 1007 ~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~---~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1083 (1267)
+..+.|.....++.+|..|+.+.||||||||||.+...|. ..+.+......+|+|+..|||+... ..|+|+++||
T Consensus 381 vE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tn 458 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATN 458 (774)
T ss_pred HHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccC
Confidence 9999999999999999999999999999999999998884 3345556678999999999999764 7899999999
Q ss_pred CCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhh
Q 000823 1084 RPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLL 1160 (1267)
Q Consensus 1084 ~p~~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~ 1160 (1267)
+++.||++++| |||+.|+++.|+...|.+|++.++.+.++. +++++..||.+|.||+|+||.
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~--------------- 523 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLA--------------- 523 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHH---------------
Confidence 99999999999 999999999999999999999999999886 788999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhcccccc
Q 000823 1161 NLWSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSS 1237 (1267)
Q Consensus 1161 ~~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~ 1237 (1267)
++|.+|+..++|+ ..+.|+.+||.+|++++....-.
T Consensus 524 ---------------n~~neaa~~a~r~--------------------------~~~~i~~~~~~~a~~Rvi~G~~~ 559 (774)
T KOG0731|consen 524 ---------------NLCNEAALLAARK--------------------------GLREIGTKDLEYAIERVIAGMEK 559 (774)
T ss_pred ---------------hhhhHHHHHHHHh--------------------------ccCccchhhHHHHHHHHhccccc
Confidence 9999999999986 34679999999999987777544
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=4e-33 Score=327.66 Aligned_cols=248 Identities=38% Similarity=0.623 Sum_probs=224.0
Q ss_pred CCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccc
Q 000823 928 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1267)
Q Consensus 928 ~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~ 1007 (1267)
..+.++|+||+|++.++++|++.+..|+.+++.|.+.++ .|++++||+||||||||++|+++|++++.+|+.+.++++.
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl-~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI-DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 345789999999999999999999999999999998885 4668999999999999999999999999999999999999
Q ss_pred hhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC
Q 000823 1008 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1267)
Q Consensus 1008 s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1267)
.+|.|+.+..++.+|..|+...|+||||||||.++..|... +......+++.+|+..++++.. ..+++||+|||++
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~--~~~v~VI~aTN~~ 294 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ--TTNVKVIMATNRA 294 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC--CCCEEEEEecCCc
Confidence 99999999999999999999999999999999998776432 2233456788889999988754 3579999999999
Q ss_pred CCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhh
Q 000823 1086 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLW 1163 (1267)
Q Consensus 1086 ~~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l 1163 (1267)
+.+|++++| ||+..|+|+.|+.++|.+||+.++.+.++..++++..++..|+||+|+||+
T Consensus 295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~------------------ 356 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIA------------------ 356 (398)
T ss_pred hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHH------------------
Confidence 999999998 999999999999999999999999999988999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhccc
Q 000823 1164 SDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCAS 1234 (1267)
Q Consensus 1164 ~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS 1234 (1267)
++|++|++.++++ +...|+++||.+|++++...
T Consensus 357 ------------~l~~eA~~~A~r~--------------------------~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 357 ------------AICQEAGMQAVRK--------------------------NRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred ------------HHHHHHHHHHHHc--------------------------CCCccCHHHHHHHHHHHHhc
Confidence 9999999999876 23579999999999987654
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=3.2e-32 Score=320.34 Aligned_cols=251 Identities=40% Similarity=0.691 Sum_probs=224.9
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch
Q 000823 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1267)
Q Consensus 929 ~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s 1008 (1267)
.+.++|+|++|+++++++|++.+..|+.+++.|...++ .+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~-~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGI-EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 45789999999999999999999999999999998775 45589999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCc--hHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000823 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1267)
Q Consensus 1009 ~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1267)
.|+|+.+..++.+|..|+...|+||||||||.+++.+.... ......+.+..++..++++.. ..++.||+|||+++
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~ 281 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRID 281 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChh
Confidence 99999999999999999999999999999999987765432 123345666778888887653 45799999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhh
Q 000823 1087 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWS 1164 (1267)
Q Consensus 1087 ~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~ 1164 (1267)
.+|++++| ||+..|+|+.|+.++|.+||+.++.+..+..++++..||..|+||+|+||+
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~------------------- 342 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLK------------------- 342 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHH-------------------
Confidence 99999998 999999999999999999999999988888889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhccccccc
Q 000823 1165 DWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1238 (1267)
Q Consensus 1165 ~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~ 1238 (1267)
.+|++|++.++++ ....|+++||.+|+++++++..++
T Consensus 343 -----------~l~~eA~~~a~~~--------------------------~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 343 -----------AICTEAGMFAIRD--------------------------DRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred -----------HHHHHHHHHHHHc--------------------------CCCCcCHHHHHHHHHHHhcccccc
Confidence 9999999998875 224699999999999999987765
No 25
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-33 Score=297.67 Aligned_cols=250 Identities=33% Similarity=0.581 Sum_probs=229.4
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch
Q 000823 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1267)
Q Consensus 929 ~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s 1008 (1267)
.+++++.|++|..+.++.|++.+..|+.+|+.|.+.++ .|++++|+|||||||||.+|+|+|+..++.|+++-.++++.
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgi-dppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGI-DPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCC-CCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 45799999999999999999999999999999999986 56699999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000823 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1267)
Q Consensus 1009 ~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1267)
+|+|+....++.+|++|+...-||||+||||.+.+.|... +......+.+-+++.++||+.. ..+|-|+++||+|+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp--rgnikvlmatnrpd 327 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP--RGNIKVLMATNRPD 327 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC--CCCeEEEeecCCCC
Confidence 9999999999999999999999999999999999988664 3344556777789999999976 57899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhh
Q 000823 1087 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWS 1164 (1267)
Q Consensus 1087 ~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~ 1164 (1267)
.|||+++| |+++.++|.+|+.+.|..||+.+.+.+.+..++-++.||+++..-+|++|+
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeir------------------- 388 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIR------------------- 388 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHH-------------------
Confidence 99999999 999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhcccccc
Q 000823 1165 DWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSS 1237 (1267)
Q Consensus 1165 ~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~ 1237 (1267)
.+|.+|.+.++|.- ....|..||.+|+.++...+.+
T Consensus 389 -----------svcteagmfairar--------------------------rk~atekdfl~av~kvvkgy~k 424 (435)
T KOG0729|consen 389 -----------SVCTEAGMFAIRAR--------------------------RKVATEKDFLDAVNKVVKGYAK 424 (435)
T ss_pred -----------HHHHHhhHHHHHHH--------------------------hhhhhHHHHHHHHHHHHHHHHh
Confidence 99999999999851 1357889999999999877654
No 26
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-33 Score=328.30 Aligned_cols=263 Identities=37% Similarity=0.615 Sum_probs=245.7
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhc
Q 000823 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1010 (1267)
Q Consensus 931 ~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~ 1010 (1267)
.++ .+++|+......+++.+..|+..+..+...+. +|++++|+|||||+|||.+++++|++.++.++.++++++++++
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~-~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGI-KPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCC-CCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 455 78999999999999999999999999998875 5679999999999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHHHHHhcC-CeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCc
Q 000823 1011 FGEGEKYVKAVFSLASKIA-PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1089 (1267)
Q Consensus 1011 ~Ge~e~~v~~lF~~A~k~~-PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld 1089 (1267)
.|+++.+++.+|+.|.+++ |+||||||||.++++|..... ...++..+++.++|++.. ..+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998876544 568899999999999863 57899999999999999
Q ss_pred HHHHh-cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhhHHH
Q 000823 1090 EAVIR-RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDWLL 1168 (1267)
Q Consensus 1090 ~aLlr-RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~~i~ 1168 (1267)
++++| ||++.+.+..|+..+|.+|++.+.++.++..+.++..+|..|.||+|+||.
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~----------------------- 391 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLA----------------------- 391 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHH-----------------------
Confidence 99999 999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhcccccccccchhhhHHH
Q 000823 1169 VYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQW 1248 (1267)
Q Consensus 1169 ~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~~~~~~~v~W 1248 (1267)
.+|+.|+..++|+ +++||+.|+..++||..++.....+.+.|
T Consensus 392 -------~l~~ea~~~~~r~-------------------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W 433 (693)
T KOG0730|consen 392 -------ALCREASLQATRR-------------------------------TLEIFQEALMGIRPSALREILVEMPNVSW 433 (693)
T ss_pred -------HHHHHHHHHHhhh-------------------------------hHHHHHHHHhcCCchhhhheeccCCCCCh
Confidence 9999999988764 67899999999999999998888999999
Q ss_pred HHhhCCCCCccc
Q 000823 1249 NELYGEGGSRRK 1260 (1267)
Q Consensus 1249 ~di~G~~~~rk~ 1260 (1267)
+||||.+..+++
T Consensus 434 ~dIGGlE~lK~e 445 (693)
T KOG0730|consen 434 DDIGGLEELKRE 445 (693)
T ss_pred hhccCHHHHHHH
Confidence 999999887765
No 27
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=3.8e-31 Score=333.37 Aligned_cols=357 Identities=20% Similarity=0.249 Sum_probs=252.8
Q ss_pred HHHHHHHHHHHhhhccCCCeEEEEcchhhhhc------CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCcc
Q 000823 674 KLLINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLL 747 (1267)
Q Consensus 674 k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~------g~~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~ 747 (1267)
+..+..+++.+.+ .+|.||||||||.+++ |+.+..+.|++.|+ +|.|.|||+||..++.+
T Consensus 260 e~~l~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~~e~~~--------- 325 (731)
T TIGR02639 260 EERLKAVVSEIEK---EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTYEEYKN--------- 325 (731)
T ss_pred HHHHHHHHHHHhc---cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCHHHHHH---------
Confidence 3345555555444 6899999999999885 34678999999995 59999999999877421
Q ss_pred ccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHH
Q 000823 748 FTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLR 827 (1267)
Q Consensus 748 l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~ 827 (1267)
.|. .|.+|.||| +.|+|++|+.+++++||+....+ +...|++....
T Consensus 326 ------------------~~~-----------~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~----~e~~~~v~i~~ 371 (731)
T TIGR02639 326 ------------------HFE-----------KDRALSRRF-QKIDVGEPSIEETVKILKGLKEK----YEEFHHVKYSD 371 (731)
T ss_pred ------------------Hhh-----------hhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHH----HHhccCcccCH
Confidence 122 489999999 69999999999999999988766 56677888888
Q ss_pred HHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccccchhHHHHHHHHHHHHHhhHhhhhhc
Q 000823 828 TVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSL 907 (1267)
Q Consensus 828 ~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~~lq~l~~~~k~lk~~~ 907 (1267)
+++.. +++|...|+.++.+|++||+.+...++...+. +....+..|+.+++..++..+-.+ |... +..
T Consensus 372 ~al~~----~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~----~~~~~~~~v~~~~i~~~i~~~tgi-P~~~-~~~-- 439 (731)
T TIGR02639 372 EALEA----AVELSARYINDRFLPDKAIDVIDEAGASFRLR----PKAKKKANVSVKDIENVVAKMAHI-PVKT-VSV-- 439 (731)
T ss_pred HHHHH----HHHhhhcccccccCCHHHHHHHHHhhhhhhcC----cccccccccCHHHHHHHHHHHhCC-Chhh-hhh--
Confidence 88877 59999999999999999999998776644332 111124457777777666643211 1000 000
Q ss_pred cccCCHHHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHH
Q 000823 908 KDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLA 987 (1267)
Q Consensus 908 k~~v~~~e~e~~li~~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LA 987 (1267)
.+.-.-..+++.+- ..+.|++++++.+.+.+..... .-....+|...+||+||+|||||+||
T Consensus 440 ~~~~~l~~l~~~l~-------------~~v~GQ~~ai~~l~~~i~~~~~-----g~~~~~~p~~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 440 DDREKLKNLEKNLK-------------AKIFGQDEAIDSLVSSIKRSRA-----GLGNPNKPVGSFLFTGPTGVGKTELA 501 (731)
T ss_pred HHHHHHHHHHHHHh-------------cceeCcHHHHHHHHHHHHHHhc-----CCCCCCCCceeEEEECCCCccHHHHH
Confidence 00000011222221 2456777777777776652100 00112356667999999999999999
Q ss_pred HHHHHHhCCceEEeeccccch-----hccCccHHHH-----HHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHH
Q 000823 988 KAVATEAGANFINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKM 1057 (1267)
Q Consensus 988 kALA~elg~~fi~I~~seL~s-----~~~Ge~e~~v-----~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~i 1057 (1267)
+++|..++.+++.++|+++.. .++|.+.+++ ..+.+..++.+.+||||||||.+ +..+
T Consensus 502 ~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka------------~~~~ 569 (731)
T TIGR02639 502 KQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA------------HPDI 569 (731)
T ss_pred HHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc------------CHHH
Confidence 999999999999999988743 3455544433 34566667778899999999966 2456
Q ss_pred HHhhhhhccCCccc-------CCCcEEEEEecCCC-------------------------CCCcHHHHhcccccccCCCC
Q 000823 1058 KNEFMVNWDGLRTK-------DTERILVLAATNRP-------------------------FDLDEAVIRRLPRRLMVNLP 1105 (1267)
Q Consensus 1058 l~eLL~~ldgl~~~-------~~~~VlVIaTTN~p-------------------------~~Ld~aLlrRFd~vI~~~~P 1105 (1267)
.+.|++.++..... +-.+.+||+|||.. ..+.|+|+.||+.+|.|...
T Consensus 570 ~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pL 649 (731)
T TIGR02639 570 YNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPL 649 (731)
T ss_pred HHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCC
Confidence 67777777654322 23578899999863 12578999999999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 000823 1106 DAPNRAKILQVILAK 1120 (1267)
Q Consensus 1106 d~eeR~eIL~~ll~k 1120 (1267)
+.++..+|++..+.+
T Consensus 650 s~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 650 SEEVLEKIVQKFVDE 664 (731)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998864
No 28
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.98 E-value=2.8e-31 Score=314.22 Aligned_cols=247 Identities=36% Similarity=0.613 Sum_probs=221.3
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch
Q 000823 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1267)
Q Consensus 929 ~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s 1008 (1267)
.+.++|+||+|++..+++|.+.+..++.+++.|...++. ++.++||+||||||||++|+++|++++.+|+.+..+++..
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 346899999999999999999999999999999988854 5689999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000823 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1267)
Q Consensus 1009 ~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1267)
.|.|+.+..++.+|..|....|+||||||||.++.++... +......+.+.+++..++++.. ..++.||+|||+++
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ATNr~d 333 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS--RGDVKVIMATNRIE 333 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc--cCCeEEEEecCChH
Confidence 9999999999999999999999999999999999776432 2233345666778888888754 35799999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhh
Q 000823 1087 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWS 1164 (1267)
Q Consensus 1087 ~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~ 1164 (1267)
.+|++++| ||++.|+|+.|+.++|.+||+.++.+..+..++++..++..++||+|+||+
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~------------------- 394 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIK------------------- 394 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHH-------------------
Confidence 99999997 999999999999999999999999999888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhccc
Q 000823 1165 DWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCAS 1234 (1267)
Q Consensus 1165 ~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS 1234 (1267)
++|++|++.++++ ....|+++||.+|++++...
T Consensus 395 -----------~i~~eA~~~Alr~--------------------------~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 395 -----------AICTEAGLLALRE--------------------------RRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred -----------HHHHHHHHHHHHh--------------------------cCCccCHHHHHHHHHHHHhh
Confidence 9999999999876 23569999999999998554
No 29
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=4.1e-31 Score=320.11 Aligned_cols=271 Identities=40% Similarity=0.596 Sum_probs=232.9
Q ss_pred CCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccc
Q 000823 926 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1005 (1267)
Q Consensus 926 ~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~se 1005 (1267)
..+.+.++|+|++|++++++++++.+.. +.+++.|.+.+. .+++++||+||||||||++|+++|.+++.+|+.+++++
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~-~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 123 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 123 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHH
Confidence 3445689999999999999999998875 788888887664 55689999999999999999999999999999999999
Q ss_pred cchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCCcEEEEEecC
Q 000823 1006 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1083 (1267)
Q Consensus 1006 L~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1083 (1267)
+...+.|..+..++.+|..|+...|+||||||||.++..+... .......+++++|+..|+++.. ..+++||+|||
T Consensus 124 ~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn 201 (495)
T TIGR01241 124 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT--NTGVIVIAATN 201 (495)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC--CCCeEEEEecC
Confidence 9999999999999999999999999999999999998776542 2234456788999999998854 45799999999
Q ss_pred CCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhh
Q 000823 1084 RPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLN 1161 (1267)
Q Consensus 1084 ~p~~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~ 1161 (1267)
+++.||++++| ||+..|+|+.|+.++|.+||+.++....+..++++..+|..+.||+++||+
T Consensus 202 ~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~---------------- 265 (495)
T TIGR01241 202 RPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLA---------------- 265 (495)
T ss_pred ChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHH----------------
Confidence 99999999998 999999999999999999999999988777888999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhcccccccccc
Q 000823 1162 LWSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVN 1241 (1267)
Q Consensus 1162 ~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~~~ 1241 (1267)
++|++|+..++++ ....|+++||.+|++++..........
T Consensus 266 --------------~l~~eA~~~a~~~--------------------------~~~~i~~~~l~~a~~~~~~~~~~~~~~ 305 (495)
T TIGR01241 266 --------------NLLNEAALLAARK--------------------------NKTEITMNDIEEAIDRVIAGPEKKSRV 305 (495)
T ss_pred --------------HHHHHHHHHHHHc--------------------------CCCCCCHHHHHHHHHHHhccccccccc
Confidence 8999888776553 225799999999999998766555455
Q ss_pred hhhhHHHHHhhCCCC
Q 000823 1242 MSELLQWNELYGEGG 1256 (1267)
Q Consensus 1242 ~~~~v~W~di~G~~~ 1256 (1267)
+.+..+|...|-+.|
T Consensus 306 ~~~~~~~~~A~hEaG 320 (495)
T TIGR01241 306 ISEKEKKLVAYHEAG 320 (495)
T ss_pred ccHHHHHHHHHHHHh
Confidence 566666666665544
No 30
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-32 Score=342.30 Aligned_cols=415 Identities=19% Similarity=0.233 Sum_probs=264.4
Q ss_pred CceeEeeccCCCCcceecccCCCCCCCC-----CCCCCCCC---cccccccccccccCCCcchhHHHHHHHHHHHHhhhc
Q 000823 617 GKVALLFEDNPSSKIGVRFDKPIPDGVD-----LGGQCEGG---HGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSES 688 (1267)
Q Consensus 617 g~v~~~~e~n~s~kvgv~Fd~~~~~~~~-----l~~~c~~~---~~ff~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~ 688 (1267)
+++..-|..+|- =||+||+|||+|+| |++.|+.+ +.|||++|+|||++|||| ++++++.|||.+..
T Consensus 288 PE~f~~~~itpP--rgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgE--aERqlrllFeeA~k-- 361 (1080)
T KOG0732|consen 288 PEFFDNFNITPP--RGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGE--AERQLRLLFEEAQK-- 361 (1080)
T ss_pred hhHhhhcccCCC--cceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCc--HHHHHHHHHHHHhc--
Confidence 344333445552 38999999999999 88999998 999999999999999999 99999999999999
Q ss_pred cCCCeEEEEcchhhhhc----CCcchhhHHHHHHhcC------CCcEEEEeecccCCCccccCCCCCccccccCCchhhh
Q 000823 689 RSCPFILFMKDAEKSIA----GNSDSYSTFKSRLEKL------PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTAL 758 (1267)
Q Consensus 689 ~~~p~ILfi~di~~~l~----g~~~~~~~lk~~L~~l------~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l 758 (1267)
++|+|+|||||+.+-. .+.+.|+.+++.|..| +|+|+||||||++|++|++ ||||||
T Consensus 362 -~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpa-------LRRPgr----- 428 (1080)
T KOG0732|consen 362 -TQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPA-------LRRPGR----- 428 (1080)
T ss_pred -cCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchh-------hcCCcc-----
Confidence 9999999999998664 7789999999999655 7999999999999999999 999999
Q ss_pred ccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHHhhhcCCCCc
Q 000823 759 LDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECE 838 (1267)
Q Consensus 759 ~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~vL~~~glsca 838 (1267)
|+++|+|++|+.++|.+|+.+|+.++...+... -.+..+-.+.||.||
T Consensus 429 -----------------------------fdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~---l~~~la~~t~gy~ga 476 (1080)
T KOG0732|consen 429 -----------------------------FDREFYFPLPDVDARAKILDIHTRKWEPPISRE---LLLWLAEETSGYGGA 476 (1080)
T ss_pred -----------------------------cceeEeeeCCchHHHHHHHHHhccCCCCCCCHH---HHHHHHHhccccchH
Confidence 889999999999999999999987744322111 133345667999999
Q ss_pred cccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccccchhHHHHHHHHHHHHHhh-----HhhhhhccccCCH
Q 000823 839 GLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNES-----KSLKKSLKDVVTE 913 (1267)
Q Consensus 839 DL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~~lq~l~~~~-----k~lk~~~k~~v~~ 913 (1267)
||+++|+++++.+ +....-..+..+...-.....+.+.-.+|..|+...-+..... +.+...++..+.-
T Consensus 477 DlkaLCTeAal~~------~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~ 550 (1080)
T KOG0732|consen 477 DLKALCTEAALIA------LRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPF 550 (1080)
T ss_pred HHHHHHHHHhhhh------hccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccch
Confidence 9999999855532 1111111111111111111222344444444443221110000 0000000011100
Q ss_pred HHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhh-hhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 000823 914 NEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPEL-FCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 992 (1267)
Q Consensus 914 ~e~e~~li~~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~-f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~ 992 (1267)
.++. ..+..++.. ......+.+...+..+..+. |.-..+.+| .+|+.|..|.|.+++..||.+
T Consensus 551 ~~~~-~~iq~~~~v-------------a~~~~k~~e~~~~~v~~~e~~~~i~lic~~--~lli~~~~~~g~~~lg~aIlh 614 (1080)
T KOG0732|consen 551 QDAL-EDIQGLMDV-------------ASSMAKIEEHLKLLVRSFESNFAIRLICRP--RLLINGGKGSGQDYLGPAILH 614 (1080)
T ss_pred HHHH-HHhhcchhH-------------HhhhhhHHHHhHHHHHhhhcccchhhhcCc--HHhcCCCcccccCcccHHHHH
Confidence 0010 011111111 11111111111110000000 111122333 599999999999999999999
Q ss_pred Hh-CCceEEeeccccchhc-cCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcc
Q 000823 993 EA-GANFINISMSSITSKW-FGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 1070 (1267)
Q Consensus 993 el-g~~fi~I~~seL~s~~-~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~ 1070 (1267)
.+ ++++..++.+.++... .+..+..+..+|.+|++..||||||.++|.|..... -.++.+|+..++....
T Consensus 615 ~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p--------~s~~~~~~~~l~~~~~ 686 (1080)
T KOG0732|consen 615 RLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIP--------VSFLEEFLSSLDEKAL 686 (1080)
T ss_pred HHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCc--------chhhhcchhcchhhhh
Confidence 98 8899888888887776 677888999999999999999999999999974432 2334444444442211
Q ss_pred cCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000823 1071 KDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1120 (1267)
Q Consensus 1071 ~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k 1120 (1267)
...|..+-+-+..+.-.+ ..+..+..|..+.+..+++..+++
T Consensus 687 --~t~i~e~~t~~~~~~~~~------~~~~t~~~p~~~s~~~ff~r~I~~ 728 (1080)
T KOG0732|consen 687 --STPILELHTWDTSFESVN------KSVVTLSKPSAESTGAFFKRLIRK 728 (1080)
T ss_pred --ccchhhhccccccccccC------ccccccccchhhhhHHHHHHHHHH
Confidence 112222221111100000 123556667777777777766654
No 31
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-31 Score=320.04 Aligned_cols=252 Identities=40% Similarity=0.614 Sum_probs=231.2
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch
Q 000823 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1267)
Q Consensus 929 ~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s 1008 (1267)
...++|.|+.|.++.|++|.+.|.. ++.|..|...+. +-|+|+||+||||||||.||+|+|.+.+.||+.++.++++.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 4578999999999999999999984 899999988876 55699999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC--CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000823 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1267)
Q Consensus 1009 ~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~--~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1267)
.++|-....++.+|..|++++||||||||||.+...|.. .+.+....+.+|+++++|||+.. +..|+||++||+|+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCcc
Confidence 999999999999999999999999999999999877743 34556667899999999999973 57899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhh
Q 000823 1087 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWS 1164 (1267)
Q Consensus 1087 ~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~ 1164 (1267)
.+|++++| |||+.|.++.||...|++|++.++++..+..++++..+|+.|.||+|+||.
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~------------------- 360 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLA------------------- 360 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHh-------------------
Confidence 99999999 999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhccccccccc
Q 000823 1165 DWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESV 1240 (1267)
Q Consensus 1165 ~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~~ 1240 (1267)
+++.+|+..+.|+ ....++|.||.+|+.++..-..+.+.
T Consensus 361 -----------nl~NEAal~aar~--------------------------n~~~i~~~~i~ea~drv~~G~erks~ 399 (596)
T COG0465 361 -----------NLLNEAALLAARR--------------------------NKKEITMRDIEEAIDRVIAGPERKSR 399 (596)
T ss_pred -----------hhHHHHHHHHHHh--------------------------cCeeEeccchHHHHHHHhcCcCcCCc
Confidence 9999999998886 33679999999999999887766544
No 32
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.97 E-value=1.1e-30 Score=326.62 Aligned_cols=399 Identities=18% Similarity=0.210 Sum_probs=279.5
Q ss_pred cceecccCCCCCCCC-----CCCCCCC--------C-cccccccccccc-cCCCcchhHHHHHHHHHHHHhhhccCCCeE
Q 000823 630 KIGVRFDKPIPDGVD-----LGGQCEG--------G-HGFFCNVTDLRL-ENSGTEDLDKLLINTLFEVVFSESRSCPFI 694 (1267)
Q Consensus 630 kvgv~Fd~~~~~~~~-----l~~~c~~--------~-~~ff~~~~~~~~-~~~~~e~~~k~~i~~L~ev~~~~~~~~p~I 694 (1267)
+--+++-+|+|+||| |+..+-. + ..|....++... .++.|+ .+.-++.+++.+.. .++.|
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge--~e~rl~~l~~~l~~---~~~~I 281 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD--FEKRFKALLKQLEQ---DTNSI 281 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhh--HHHHHHHHHHHHHh---cCCCE
Confidence 445688999999999 3322111 1 112222222111 455666 55556666666654 78999
Q ss_pred EEEcchhhhhc------CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccc
Q 000823 695 LFMKDAEKSIA------GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFG 768 (1267)
Q Consensus 695 Lfi~di~~~l~------g~~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~ 768 (1267)
|||||||.+++ |+.++.+.|++.|. +|.|.|||+||.+++++ .|.
T Consensus 282 LfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~~~---------------------------~~~ 332 (758)
T PRK11034 282 LFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSN---------------------------IFE 332 (758)
T ss_pred EEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHHHH---------------------------Hhh
Confidence 99999999885 35788999999995 49999999999887421 122
Q ss_pred cccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceecccc
Q 000823 769 RLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQ 848 (1267)
Q Consensus 769 r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~ 848 (1267)
.|.+|.||| ++|+|++|+.++++.||+.+..+ +...|++....+++.+ +++|+..|+.++
T Consensus 333 -----------~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~----ye~~h~v~i~~~al~~----a~~ls~ryi~~r 392 (758)
T PRK11034 333 -----------KDRALARRF-QKIDITEPSIEETVQIINGLKPK----YEAHHDVRYTAKAVRA----AVELAVKYINDR 392 (758)
T ss_pred -----------ccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHH----hhhccCCCcCHHHHHH----HHHHhhccccCc
Confidence 389999999 79999999999999999988777 7788999999998877 489999999999
Q ss_pred ccchHHHHHHHHHHHHhhhccCCCCCCcccccccchhHHHHHHHHHHHHHhhHhhhhhccccCCHHHHHHHHhcCcCCCC
Q 000823 849 SLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPS 928 (1267)
Q Consensus 849 ~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~~lq~l~~~~k~lk~~~k~~v~~~e~e~~li~~ii~~~ 928 (1267)
.+|+++|+.+...++...+. |....+..|+.+++...+..+-.+ |... +.. .+...-..++..+-
T Consensus 393 ~lPdKaidlldea~a~~~~~----~~~~~~~~v~~~~i~~v~~~~tgi-p~~~-~~~--~~~~~l~~l~~~L~------- 457 (758)
T PRK11034 393 HLPDKAIDVIDEAGARARLM----PVSKRKKTVNVADIESVVARIARI-PEKS-VSQ--SDRDTLKNLGDRLK------- 457 (758)
T ss_pred cChHHHHHHHHHHHHhhccC----cccccccccChhhHHHHHHHHhCC-Chhh-hhh--hHHHHHHHHHHHhc-------
Confidence 99999999999988765442 211223346666666555433211 1000 000 00000011222111
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeecccc--
Q 000823 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI-- 1006 (1267)
Q Consensus 929 ~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL-- 1006 (1267)
..++|++++++.|.+.+...... -....+|..++||+||||||||++|+++|..++.+|+.++|+++
T Consensus 458 ------~~ViGQ~~ai~~l~~~i~~~~~g-----l~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~ 526 (758)
T PRK11034 458 ------MLVFGQDKAIEALTEAIKMSRAG-----LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME 526 (758)
T ss_pred ------ceEeCcHHHHHHHHHHHHHHhcc-----ccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcc
Confidence 24678999999988887632110 01124666789999999999999999999999999999999886
Q ss_pred ---chhccCccHHHHH-----HHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc-------
Q 000823 1007 ---TSKWFGEGEKYVK-----AVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------- 1071 (1267)
Q Consensus 1007 ---~s~~~Ge~e~~v~-----~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~------- 1071 (1267)
.++++|.+.+++. .+.+..++.+.+||||||||.+ +..+.+.|++.|+.....
T Consensus 527 ~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka------------~~~v~~~LLq~ld~G~ltd~~g~~v 594 (758)
T PRK11034 527 RHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA------------HPDVFNLLLQVMDNGTLTDNNGRKA 594 (758)
T ss_pred cccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh------------hHHHHHHHHHHHhcCeeecCCCcee
Confidence 3456665554442 3455556777899999999966 255677777777644322
Q ss_pred CCCcEEEEEecCCC-------------------------CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000823 1072 DTERILVLAATNRP-------------------------FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1120 (1267)
Q Consensus 1072 ~~~~VlVIaTTN~p-------------------------~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k 1120 (1267)
+-.+++||+|||.- ..+.|+|++|++.+|.|+.++.++..+|+...+.+
T Consensus 595 d~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred cCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 22578999999932 23668999999999999999999999999887753
No 33
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.97 E-value=1.8e-29 Score=320.87 Aligned_cols=380 Identities=22% Similarity=0.267 Sum_probs=253.5
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhc-----CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccc
Q 000823 676 LINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTK 750 (1267)
Q Consensus 676 ~i~~L~ev~~~~~~~~p~ILfi~di~~~l~-----g~~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r 750 (1267)
.|..+++.+.. ..+++||||||||.+++ |++++.+.|++.|++ |.+.|||+||..++++
T Consensus 267 ~lk~ii~e~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~~e~~~------------ 330 (852)
T TIGR03345 267 RLKSVIDEVKA--SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTWAEYKK------------ 330 (852)
T ss_pred HHHHHHHHHHh--cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCHHHHhh------------
Confidence 44444444432 25799999999999885 678888999999954 9999999999887421
Q ss_pred cCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHHh
Q 000823 751 FGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVL 830 (1267)
Q Consensus 751 ~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~vL 830 (1267)
+|. .|.+|.||| +.|+|++|+.+++.+||+..... +..+|++.....++
T Consensus 331 ---------------~~~-----------~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~----~e~~~~v~i~d~al 379 (852)
T TIGR03345 331 ---------------YFE-----------KDPALTRRF-QVVKVEEPDEETAIRMLRGLAPV----LEKHHGVLILDEAV 379 (852)
T ss_pred ---------------hhh-----------ccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHh----hhhcCCCeeCHHHH
Confidence 122 489999999 89999999999999999877655 66668888888888
Q ss_pred hhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCC--cc--cc--------cccchh-------------
Q 000823 831 GRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADP--DA--RL--------VLSCES------------- 885 (1267)
Q Consensus 831 ~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~--~~--kl--------~Is~ed------------- 885 (1267)
... ++|...|+.++.+|++||+.++..++...+.....|.. +. ++ .+..++
T Consensus 380 ~~~----~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (852)
T TIGR03345 380 VAA----VELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAEL 455 (852)
T ss_pred HHH----HHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHH
Confidence 874 99999999999999999999999988777654444421 00 00 000000
Q ss_pred ------HHHHHHHHHHHHHhhHh------------------------------------hh---h---hccccCCHHHHH
Q 000823 886 ------IQYGIGIFQAIQNESKS------------------------------------LK---K---SLKDVVTENEFE 917 (1267)
Q Consensus 886 ------~~~al~~lq~l~~~~k~------------------------------------lk---~---~~k~~v~~~e~e 917 (1267)
+...+..+.......+. +. . .....++..++.
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~ 535 (852)
T TIGR03345 456 RAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVA 535 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHH
Confidence 00000000000000000 00 0 001235556665
Q ss_pred HHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhh------cCC---CCCCCceEEEEcCCCChHHHHHH
Q 000823 918 KRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFC------KGQ---LTKPCKGILLFGPPGTGKTMLAK 988 (1267)
Q Consensus 918 ~~li~~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~------~~~---~~kP~~gVLL~GPpGTGKT~LAk 988 (1267)
. +++.++.++...+..++...+.++.+.|.+.|.++-...+... +.+ ..+|...+||+||+|||||++|+
T Consensus 536 ~-vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 536 E-VVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETAL 614 (852)
T ss_pred H-HHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHH
Confidence 4 5666766665555444444334444444443333322222111 112 23555569999999999999999
Q ss_pred HHHHHh---CCceEEeeccccc-----hhccCccHHHHH-----HHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHH
Q 000823 989 AVATEA---GANFINISMSSIT-----SKWFGEGEKYVK-----AVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMR 1055 (1267)
Q Consensus 989 ALA~el---g~~fi~I~~seL~-----s~~~Ge~e~~v~-----~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~ 1055 (1267)
++|..+ ...++.++|+++. +.++|.+.+++. .+.+..++.+++||+|||||.+ +.
T Consensus 615 ~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka------------~~ 682 (852)
T TIGR03345 615 ALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA------------HP 682 (852)
T ss_pred HHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhc------------CH
Confidence 999999 4578999998873 335565555542 3556667888999999999854 24
Q ss_pred HHHHhhhhhccCCcccC-------CCcEEEEEecCCC-----------------------------CCCcHHHHhccccc
Q 000823 1056 KMKNEFMVNWDGLRTKD-------TERILVLAATNRP-----------------------------FDLDEAVIRRLPRR 1099 (1267)
Q Consensus 1056 ~il~eLL~~ldgl~~~~-------~~~VlVIaTTN~p-----------------------------~~Ld~aLlrRFd~v 1099 (1267)
.+.+.|++.++.....+ -.+.+||+|||.. ..+.|+|++|++ +
T Consensus 683 ~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-i 761 (852)
T TIGR03345 683 DVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-V 761 (852)
T ss_pred HHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-E
Confidence 56666777776554322 2578999999851 125578888996 8
Q ss_pred ccCCCCCHHHHHHHHHHHHhh
Q 000823 1100 LMVNLPDAPNRAKILQVILAK 1120 (1267)
Q Consensus 1100 I~~~~Pd~eeR~eIL~~ll~k 1120 (1267)
|.|..++.++..+|++..+..
T Consensus 762 I~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 762 IPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999888754
No 34
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.97 E-value=6.5e-29 Score=316.47 Aligned_cols=380 Identities=18% Similarity=0.233 Sum_probs=256.6
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhc-----CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccc
Q 000823 676 LINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTK 750 (1267)
Q Consensus 676 ~i~~L~ev~~~~~~~~p~ILfi~di~~~l~-----g~~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r 750 (1267)
-|..+++.+. +.+++||||||||.+++ |..++.+.|++.|. +|.|.|||+||..++++
T Consensus 259 rl~~i~~~~~---~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ey~~------------ 321 (821)
T CHL00095 259 RLKRIFDEIQ---ENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDEYRK------------ 321 (821)
T ss_pred HHHHHHHHHH---hcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHHHHH------------
Confidence 3444444444 37899999999999986 45678999999995 59999999999887532
Q ss_pred cCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHHh
Q 000823 751 FGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVL 830 (1267)
Q Consensus 751 ~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~vL 830 (1267)
++. .|.+|.+|| +.|++.+|+.++...|++...++ +...+++....+++
T Consensus 322 ---------------~ie-----------~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~----~e~~~~v~i~deal 370 (821)
T CHL00095 322 ---------------HIE-----------KDPALERRF-QPVYVGEPSVEETIEILFGLRSR----YEKHHNLSISDKAL 370 (821)
T ss_pred ---------------HHh-----------cCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHH----HHHHcCCCCCHHHH
Confidence 112 378899999 78999999999999999987766 45556666666666
Q ss_pred hhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccc-------------cccchhHHHHHHHHHH--
Q 000823 831 GRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARL-------------VLSCESIQYGIGIFQA-- 895 (1267)
Q Consensus 831 ~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl-------------~Is~ed~~~al~~lq~-- 895 (1267)
.. .++|...|+.++.+|++||+.+...++...+.....|.....+ .+..+++..+......
T Consensus 371 ~~----i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (821)
T CHL00095 371 EA----AAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREM 446 (821)
T ss_pred HH----HHHHhhccCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 65 3889999999999999999999999887776544443211100 0111122222111110
Q ss_pred -HHHhhHhhh---------hhccccCCHHHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhh---
Q 000823 896 -IQNESKSLK---------KSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFC--- 962 (1267)
Q Consensus 896 -l~~~~k~lk---------~~~k~~v~~~e~e~~li~~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~--- 962 (1267)
+......+. ......++.+++.. +++.++..+...+.-++...+.++.+.|.+.|.++-...+.+.
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~-~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i 525 (821)
T CHL00095 447 EVRAQIAAIIQSKKTEEEKRLEVPVVTEEDIAE-IVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAI 525 (821)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCccCHHHHHH-HHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHH
Confidence 000000000 01113477777765 6677777766555544444333444444444433332222211
Q ss_pred ---cC---CCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccc-----hhccCccHHHH-----HHHHH
Q 000823 963 ---KG---QLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-----SKWFGEGEKYV-----KAVFS 1023 (1267)
Q Consensus 963 ---~~---~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~-----s~~~Ge~e~~v-----~~lF~ 1023 (1267)
+. ...+|...+||+||+|||||+||++||+.+ +.+++.++++++. ++++|.+++++ ..+.+
T Consensus 526 ~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~ 605 (821)
T CHL00095 526 RRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTE 605 (821)
T ss_pred HHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHH
Confidence 11 235566679999999999999999999998 4689999998873 34455554444 34677
Q ss_pred HHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc-------CCCcEEEEEecCCCC----------
Q 000823 1024 LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRPF---------- 1086 (1267)
Q Consensus 1024 ~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~-------~~~~VlVIaTTN~p~---------- 1086 (1267)
..++.+.+||+|||||.+ +..+.+.|++.++..... +-.+.+||+|||...
T Consensus 606 ~~~~~p~~VvllDeieka------------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~ 673 (821)
T CHL00095 606 AVRKKPYTVVLFDEIEKA------------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGL 673 (821)
T ss_pred HHHhCCCeEEEECChhhC------------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhcccc
Confidence 777888899999999966 255667777777754322 236789999998521
Q ss_pred ---------------------------CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000823 1087 ---------------------------DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1120 (1267)
Q Consensus 1087 ---------------------------~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k 1120 (1267)
.+.|+|++|++.+|.|...+.++..+|++..+.+
T Consensus 674 gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 674 GFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred CCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 0346788899999999999999999999888764
No 35
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=2.2e-29 Score=294.10 Aligned_cols=245 Identities=43% Similarity=0.716 Sum_probs=216.3
Q ss_pred CCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccc
Q 000823 928 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1267)
Q Consensus 928 ~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~ 1007 (1267)
..+.++|+|++|++++++.|++.+..++.+++.|...++. +++++||+||||||||++|+++|++++.+|+.+.+.++.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 3457899999999999999999999999999999887754 558999999999999999999999999999999999999
Q ss_pred hhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCc--hHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC
Q 000823 1008 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1267)
Q Consensus 1008 s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1267)
..++|+.+..++.+|..++...|+||||||||.++..+.... ......+.+..++..++++.. ..++.||+|||++
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~ 271 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRP 271 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCCh
Confidence 999999999999999999999999999999999987654321 122334566677777777643 3579999999999
Q ss_pred CCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhh
Q 000823 1086 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLW 1163 (1267)
Q Consensus 1086 ~~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l 1163 (1267)
+.+|+++++ ||+..|+|+.|+.++|.+||+.++....+..++++..|++.++||+|+||+
T Consensus 272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~------------------ 333 (364)
T TIGR01242 272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLK------------------ 333 (364)
T ss_pred hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHH------------------
Confidence 999999998 999999999999999999999999888888889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHh
Q 000823 1164 SDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV 1231 (1267)
Q Consensus 1164 ~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v 1231 (1267)
++|++|++.++++ ....|+++||.+|++++
T Consensus 334 ------------~l~~~A~~~a~~~--------------------------~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 334 ------------AICTEAGMFAIRE--------------------------ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred ------------HHHHHHHHHHHHh--------------------------CCCccCHHHHHHHHHHh
Confidence 9999999999875 22579999999999876
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=2.9e-29 Score=316.90 Aligned_cols=288 Identities=37% Similarity=0.621 Sum_probs=246.6
Q ss_pred CCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchh
Q 000823 930 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1009 (1267)
Q Consensus 930 ~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~ 1009 (1267)
..++|+||+|++.+++.+++.+..++.+++.|...++ .+++++||+||||||||+||+++|++++.+|+.++++++.++
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi-~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4689999999999999999999999999999998775 466899999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCc
Q 000823 1010 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1089 (1267)
Q Consensus 1010 ~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld 1089 (1267)
+.|+.+..++.+|..|....|+||||||||.+++.+.... .....++.+.|+..++++.. ...++||++||+++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999988765432 23346788889999988754 46899999999999999
Q ss_pred HHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhhHH
Q 000823 1090 EAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDWL 1167 (1267)
Q Consensus 1090 ~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~~i 1167 (1267)
+++++ ||+..+.++.|+.++|.+||+.+.....+..+.+++.+++.++||+++||.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~---------------------- 386 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLA---------------------- 386 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHH----------------------
Confidence 99998 999999999999999999999998888887889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCCcccCHHHHHHHHHHhcccccccccchhhhH
Q 000823 1168 LVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPAL-SGCADIRPLNMDDFKYAHERVCASVSSESVNMSELL 1246 (1267)
Q Consensus 1168 ~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~-~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~~~~~~~v 1246 (1267)
.+|+.|++.++++.+....... . ...+ ........++++||..|++.++|+...+.....+.+
T Consensus 387 --------~l~~~a~~~al~r~~~~~~~~~-------~-~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~ 450 (733)
T TIGR01243 387 --------ALAKEAAMAALRRFIREGKINF-------E-AEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNV 450 (733)
T ss_pred --------HHHHHHHHHHHHHHhhcccccc-------c-cccccchhcccccccHHHHHHHHhhccccccchhhcccccc
Confidence 8999999999888654211000 0 0000 011233469999999999999999988877778899
Q ss_pred HHHHhhCCCCCcc
Q 000823 1247 QWNELYGEGGSRR 1259 (1267)
Q Consensus 1247 ~W~di~G~~~~rk 1259 (1267)
.|+|++|.+..++
T Consensus 451 ~~~di~g~~~~k~ 463 (733)
T TIGR01243 451 RWSDIGGLEEVKQ 463 (733)
T ss_pred chhhcccHHHHHH
Confidence 9999999876654
No 37
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=1.3e-28 Score=295.17 Aligned_cols=300 Identities=28% Similarity=0.449 Sum_probs=232.5
Q ss_pred CCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 000823 928 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------- 997 (1267)
Q Consensus 928 ~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~---------- 997 (1267)
..+.++|+||+|++..++++++.+..|+.+++.|...++ .|++++|||||||||||++|+++|++++.+
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl-~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDL-KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccC-CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 345789999999999999999999999999999998775 456899999999999999999999998544
Q ss_pred eEEeeccccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCC
Q 000823 998 FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT 1073 (1267)
Q Consensus 998 fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~ 1073 (1267)
|+.+..+++.++|.|+.+..++.+|..|+.. .|+||||||||.++..|...........++++|+..|+++.. .
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~--~ 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES--L 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc--C
Confidence 6677888899999999999999999998865 699999999999998876544445557888999999999865 3
Q ss_pred CcEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhh
Q 000823 1074 ERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSH 1151 (1267)
Q Consensus 1074 ~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a 1151 (1267)
.+++||+|||+++.||++++| ||+..|+|+.|+.++|.+||+.++... +. +...+..+.||+++++..++..+
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~----l~~~l~~~~g~~~a~~~al~~~a 406 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LP----LDADLAEFDGDREATAAALIQRA 406 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CC----chHHHHHhcCCCHHHHHHHHHHH
Confidence 579999999999999999999 999999999999999999999998642 11 12234457899999999887765
Q ss_pred h--hHHHHH---hhh---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCc
Q 000823 1152 S--LICNVL---LLN---------LWSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIR 1217 (1267)
Q Consensus 1152 ~--l~~~vr---~~~---------~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~ 1217 (1267)
. +++... +.. .+.-.-......++++|..|...++++.+.. ...
T Consensus 407 v~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~----------------------~~~ 464 (512)
T TIGR03689 407 VDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG----------------------GQV 464 (512)
T ss_pred HHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc----------------------CCc
Confidence 2 221110 010 0000111124567799999999999886531 225
Q ss_pred ccCHHHHHHHHHHhcccccccccchhhhHHHHHhhCCCCCc
Q 000823 1218 PLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSR 1258 (1267)
Q Consensus 1218 ~Vt~eDf~~Al~~v~pS~s~~~~~~~~~v~W~di~G~~~~r 1258 (1267)
.++++|+..|+..-...-- +..+...-..|..+.|..|-|
T Consensus 465 ~~~~~~l~~a~~~e~~~~~-~~~~~~~~~~w~~~~~~~~~~ 504 (512)
T TIGR03689 465 GLRIEHLLAAVLDEFRESE-DLPNTTNPDDWARISGKKGER 504 (512)
T ss_pred CcCHHHHHHHHHHhhcccc-cCCCCCCHHHHhhhhCCCCCc
Confidence 7999999999986543321 122223345799999987643
No 38
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.96 E-value=4.2e-28 Score=309.10 Aligned_cols=364 Identities=20% Similarity=0.259 Sum_probs=242.4
Q ss_pred CCCeEEEEcchhhhhc-----CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCC
Q 000823 690 SCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFP 764 (1267)
Q Consensus 690 ~~p~ILfi~di~~~l~-----g~~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~ 764 (1267)
.+|+||||||+|.+++ |..+..+.|++.|+ +|.+.|||+||.+++++
T Consensus 270 ~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~IgaTt~~e~r~-------------------------- 321 (857)
T PRK10865 270 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQ-------------------------- 321 (857)
T ss_pred CCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEcCCCHHHHH--------------------------
Confidence 6899999999999885 56788999999995 59999999999988522
Q ss_pred CccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHHhhhcCCCCcccccee
Q 000823 765 DSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLC 844 (1267)
Q Consensus 765 ~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~ 844 (1267)
.|. .|.+|.||| +.|.|.+|+.++++.||++...+ +..+|++.....++.+ ++.|+..|
T Consensus 322 -~~~-----------~d~al~rRf-~~i~v~eP~~~~~~~iL~~l~~~----~e~~~~v~~~d~a~~~----a~~ls~ry 380 (857)
T PRK10865 322 -YIE-----------KDAALERRF-QKVFVAEPSVEDTIAILRGLKER----YELHHHVQITDPAIVA----AATLSHRY 380 (857)
T ss_pred -Hhh-----------hcHHHHhhC-CEEEeCCCCHHHHHHHHHHHhhh----hccCCCCCcCHHHHHH----HHHHhhcc
Confidence 122 489999999 68999999999999999987666 7788888888887776 37899999
Q ss_pred ccccccchHHHHHHHHHHHHhhhccCCCCCCcc----cc--------cccch----------hHHHHHHHHHH----HHH
Q 000823 845 IRDQSLTNESAEKIVGWALSHHLMQNPEADPDA----RL--------VLSCE----------SIQYGIGIFQA----IQN 898 (1267)
Q Consensus 845 ~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~----kl--------~Is~e----------d~~~al~~lq~----l~~ 898 (1267)
+.++.+|++|++.+...+....+.....|..-. .+ .+..+ .+...+...++ +..
T Consensus 381 ~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~e 460 (857)
T PRK10865 381 IADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEE 460 (857)
T ss_pred ccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888766655433332100 00 00000 00000000000 000
Q ss_pred -----------------hhHh-------------------------------hh----------hhccccCCHHHHHHHH
Q 000823 899 -----------------ESKS-------------------------------LK----------KSLKDVVTENEFEKRL 920 (1267)
Q Consensus 899 -----------------~~k~-------------------------------lk----------~~~k~~v~~~e~e~~l 920 (1267)
+... +. ......++.+++.. +
T Consensus 461 q~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~-v 539 (857)
T PRK10865 461 EWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAE-V 539 (857)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHH-H
Confidence 0000 00 00012255555554 5
Q ss_pred hcCcCCCCCCCccch--------------hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHH
Q 000823 921 LADVIPPSDIGVTFD--------------DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTML 986 (1267)
Q Consensus 921 i~~ii~~~~~~vt~~--------------DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~L 986 (1267)
++.+..+|...+.-+ .+.|++.+.+.+...+..... .-....+|...+||+||+|||||++
T Consensus 540 v~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~-----gl~~~~~p~~~~Lf~Gp~G~GKT~l 614 (857)
T PRK10865 540 LARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRA-----GLSDPNRPIGSFLFLGPTGVGKTEL 614 (857)
T ss_pred HHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHh-----cccCCCCCCceEEEECCCCCCHHHH
Confidence 666666665444433 355666666666655542100 0001234556799999999999999
Q ss_pred HHHHHHHh---CCceEEeeccccch-----hccCccHHHH-----HHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHH
Q 000823 987 AKAVATEA---GANFINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEA 1053 (1267)
Q Consensus 987 AkALA~el---g~~fi~I~~seL~s-----~~~Ge~e~~v-----~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~ 1053 (1267)
|++||..+ +.+++.++|+++.. ..+|.+++++ ..+.+..+..+.+|||||||+.+-
T Consensus 615 A~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~----------- 683 (857)
T PRK10865 615 CKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH----------- 683 (857)
T ss_pred HHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC-----------
Confidence 99999987 56799999987643 3344443333 124444556666999999999662
Q ss_pred HHHHHHhhhhhccCCcc-------cCCCcEEEEEecCCC-------------------------CCCcHHHHhccccccc
Q 000823 1054 MRKMKNEFMVNWDGLRT-------KDTERILVLAATNRP-------------------------FDLDEAVIRRLPRRLM 1101 (1267)
Q Consensus 1054 ~~~il~eLL~~ldgl~~-------~~~~~VlVIaTTN~p-------------------------~~Ld~aLlrRFd~vI~ 1101 (1267)
..+.+.|+..++.... .+-.+.+||+|||.. ..+.|+|++|++.++.
T Consensus 684 -~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iiv 762 (857)
T PRK10865 684 -PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVV 762 (857)
T ss_pred -HHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEe
Confidence 3455555555543321 123567899999862 2356799999999999
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q 000823 1102 VNLPDAPNRAKILQVILAK 1120 (1267)
Q Consensus 1102 ~~~Pd~eeR~eIL~~ll~k 1120 (1267)
|.+++.++..+|++.++.+
T Consensus 763 F~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 763 FHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988865
No 39
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.96 E-value=6.6e-28 Score=308.14 Aligned_cols=374 Identities=18% Similarity=0.269 Sum_probs=249.8
Q ss_pred HHHHHHHHHHhhhccCCCeEEEEcchhhhhc-----CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCcccc
Q 000823 675 LLINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFT 749 (1267)
Q Consensus 675 ~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~-----g~~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~ 749 (1267)
..+..+++.+.. ...|+||||||||.+++ |+.++.+.|+++|+ +|.|.|||+||..++++
T Consensus 252 ~~l~~~l~~~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt~~e~r~----------- 316 (852)
T TIGR03346 252 ERLKAVLNEVTK--SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATTLDEYRK----------- 316 (852)
T ss_pred HHHHHHHHHHHh--cCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCcHHHHHH-----------
Confidence 344555554433 14799999999999884 45678999999994 59999999999987422
Q ss_pred ccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHH
Q 000823 750 KFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTV 829 (1267)
Q Consensus 750 r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~v 829 (1267)
.|. .|.+|.||| +.|.|++|+.++++.||+....+ +..+|++.....+
T Consensus 317 ----------------~~~-----------~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~----~e~~~~v~~~d~~ 364 (852)
T TIGR03346 317 ----------------YIE-----------KDAALERRF-QPVFVDEPTVEDTISILRGLKER----YEVHHGVRITDPA 364 (852)
T ss_pred ----------------Hhh-----------cCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHH----hccccCCCCCHHH
Confidence 112 388999999 78999999999999999987666 7888999888888
Q ss_pred hhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCC--c--ccc--------cccch-------------
Q 000823 830 LGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADP--D--ARL--------VLSCE------------- 884 (1267)
Q Consensus 830 L~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~--~--~kl--------~Is~e------------- 884 (1267)
+.+ +++|+..|+.++.+|++||+.+...++...+.....|.. . .++ .+..+
T Consensus 365 i~~----~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (852)
T TIGR03346 365 IVA----AATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLE 440 (852)
T ss_pred HHH----HHHhccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 777 489999999999999999999999988776654433321 0 000 00000
Q ss_pred ----hHHHHHHHHHHH-HHhh--------------------------------------------Hhh---h--------
Q 000823 885 ----SIQYGIGIFQAI-QNES--------------------------------------------KSL---K-------- 904 (1267)
Q Consensus 885 ----d~~~al~~lq~l-~~~~--------------------------------------------k~l---k-------- 904 (1267)
.+...+..+... ..+. +.+ .
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (852)
T TIGR03346 441 KELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETK 520 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccc
Confidence 000000000000 0000 000 0
Q ss_pred -hhccccCCHHHHHHHHhcCcCCCCCCCccchh--------------ccccHHHHHHHHHHHhCccCchhhhhcC---CC
Q 000823 905 -KSLKDVVTENEFEKRLLADVIPPSDIGVTFDD--------------IGALENVKDTLKELVMLPLQRPELFCKG---QL 966 (1267)
Q Consensus 905 -~~~k~~v~~~e~e~~li~~ii~~~~~~vt~~D--------------I~Gle~vk~~L~e~V~~pl~~~e~f~~~---~~ 966 (1267)
......++.+++.. +++.++..+...+..++ +.|++.+.+.+.+.+... +. ..
T Consensus 521 ~~l~~~~v~~~~i~~-v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~--------~~gl~~~ 591 (852)
T TIGR03346 521 PRLLREEVTAEEIAE-VVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS--------RAGLSDP 591 (852)
T ss_pred cccccCCcCHHHHHH-HHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH--------hccCCCC
Confidence 00112355555554 55666555544433333 445555555554444321 11 12
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccc-----hhccCccHHHH-----HHHHHHHHhcCCeEE
Q 000823 967 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-----SKWFGEGEKYV-----KAVFSLASKIAPSVI 1033 (1267)
Q Consensus 967 ~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~-----s~~~Ge~e~~v-----~~lF~~A~k~~PsII 1033 (1267)
.+|...+||+||+|||||++|++||..+ +.+++.++|+++. ...+|.+.+++ ..+....++.+.+||
T Consensus 592 ~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vl 671 (852)
T TIGR03346 592 NRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVV 671 (852)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEE
Confidence 4566789999999999999999999988 5789999998763 33445444433 345566677778899
Q ss_pred EEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc-------CCCcEEEEEecCCCC--------------------
Q 000823 1034 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRPF-------------------- 1086 (1267)
Q Consensus 1034 fIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~-------~~~~VlVIaTTN~p~-------------------- 1086 (1267)
||||||.+ +..+.+.|++.++..... +-.+.+||+|||...
T Consensus 672 llDeieka------------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~ 739 (852)
T TIGR03346 672 LFDEVEKA------------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVM 739 (852)
T ss_pred EEeccccC------------CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHH
Confidence 99999966 245566666666543322 135788999999721
Q ss_pred -----CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000823 1087 -----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1120 (1267)
Q Consensus 1087 -----~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k 1120 (1267)
.+.|+|+.|++.++.|.+++.++..+|+...+..
T Consensus 740 ~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~ 778 (852)
T TIGR03346 740 EVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGR 778 (852)
T ss_pred HHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHH
Confidence 2457888899999999999999999999888753
No 40
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-29 Score=278.17 Aligned_cols=244 Identities=36% Similarity=0.672 Sum_probs=218.8
Q ss_pred CCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchh
Q 000823 930 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1009 (1267)
Q Consensus 930 ~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~ 1009 (1267)
-.++|+.++|+..+..+|++.+..|+..+++|.+.++ +||.++|||||||+|||.+|+++|..+|++|+.+.++++.++
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCC-CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 4689999999999999999999999999999998775 677999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCc--hHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCC
Q 000823 1010 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1087 (1267)
Q Consensus 1010 ~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~ 1087 (1267)
++|++.+.+++.|..|+.+.|||||+||||...+++.+.. ......+.+.+|+.+|+++.. ..+|-+|+|||+|+.
T Consensus 206 yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRPDT 283 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCccc
Confidence 9999999999999999999999999999999999886543 233445666677778888754 478999999999999
Q ss_pred CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhh
Q 000823 1088 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSD 1165 (1267)
Q Consensus 1088 Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~ 1165 (1267)
|+|+|+| |+++.+++|+|+...|..|++...........++.+.+.+..+||.|+|++
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~r-------------------- 343 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLR-------------------- 343 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHh--------------------
Confidence 9999999 999999999999999999999988888878889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhc
Q 000823 1166 WLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1232 (1267)
Q Consensus 1166 ~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~ 1232 (1267)
+.|++|.+-++++ +...+-+|||.+|+.++.
T Consensus 344 ----------n~~tEag~Fa~~~--------------------------~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 344 ----------NVCTEAGMFAIPE--------------------------ERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred ----------hhcccccccccch--------------------------hhHHHhHHHHHHHHHHHH
Confidence 9999999887765 223477889998888764
No 41
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=1.4e-28 Score=303.23 Aligned_cols=246 Identities=39% Similarity=0.618 Sum_probs=215.0
Q ss_pred CCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccc
Q 000823 928 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1267)
Q Consensus 928 ~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~ 1007 (1267)
....++|+|++|++++++++.+.+.. ++.++.|...+. .+++++||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~ 253 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV 253 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence 34568999999999999999998765 778888877664 4568999999999999999999999999999999999998
Q ss_pred hhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC--CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC
Q 000823 1008 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1267)
Q Consensus 1008 s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~--~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1267)
..+.|.....++.+|..|+...|+||||||||.+...|.. .+.+.....+++.|+..++++.. +.+++||++||++
T Consensus 254 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~ 331 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRV 331 (638)
T ss_pred HHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCch
Confidence 8888888889999999999999999999999999876643 22344556788899999998754 4689999999999
Q ss_pred CCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhh
Q 000823 1086 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLW 1163 (1267)
Q Consensus 1086 ~~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l 1163 (1267)
+.+|++++| ||++.|.|+.|+.++|.+||+.++.+..+..++++..+|..|.||+|+||+
T Consensus 332 ~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~------------------ 393 (638)
T CHL00176 332 DILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLA------------------ 393 (638)
T ss_pred HhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHH------------------
Confidence 999999998 999999999999999999999999988778889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhcc
Q 000823 1164 SDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCA 1233 (1267)
Q Consensus 1164 ~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~p 1233 (1267)
++|++|+..+.++ ....|+++||.+|++++..
T Consensus 394 ------------~lvneAal~a~r~--------------------------~~~~It~~dl~~Ai~rv~~ 425 (638)
T CHL00176 394 ------------NLLNEAAILTARR--------------------------KKATITMKEIDTAIDRVIA 425 (638)
T ss_pred ------------HHHHHHHHHHHHh--------------------------CCCCcCHHHHHHHHHHHHh
Confidence 8888888776654 2256999999999998743
No 42
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=8.6e-28 Score=298.58 Aligned_cols=251 Identities=39% Similarity=0.608 Sum_probs=219.4
Q ss_pred CCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccc
Q 000823 928 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1267)
Q Consensus 928 ~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~ 1007 (1267)
.....+|+|+.|++..++.+.+.+.. +..+..+...+. ..++++||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~-~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 34457899999999999999998876 555666655443 3447899999999999999999999999999999999999
Q ss_pred hhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC--CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC
Q 000823 1008 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1267)
Q Consensus 1008 s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~--~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1267)
..+.|.....++.+|..|+..+|+||||||||.++..|.. .+.+....++++.++..|+++.. +..++||+|||++
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p 300 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRP 300 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCCh
Confidence 9999999999999999999999999999999999877654 23344556789999999999864 4679999999999
Q ss_pred CCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhh
Q 000823 1086 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLW 1163 (1267)
Q Consensus 1086 ~~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l 1163 (1267)
+.||++++| ||++.|.|+.|+.++|.+||+.++.+..+..++++..+|+.|.||+|+||.
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~------------------ 362 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA------------------ 362 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHH------------------
Confidence 999999998 999999999999999999999999998888899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhccccccc
Q 000823 1164 SDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1238 (1267)
Q Consensus 1164 ~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~ 1238 (1267)
++|++|+..++++ +...|+++||.+|+.++.+...+.
T Consensus 363 ------------~l~~eAa~~a~r~--------------------------~~~~i~~~d~~~a~~~v~~g~~~~ 399 (644)
T PRK10733 363 ------------NLVNEAALFAARG--------------------------NKRVVSMVEFEKAKDKIMMGAERR 399 (644)
T ss_pred ------------HHHHHHHHHHHHc--------------------------CCCcccHHHHHHHHHHHhcccccc
Confidence 9999999888764 235799999999999998776543
No 43
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.7e-28 Score=300.15 Aligned_cols=266 Identities=34% Similarity=0.539 Sum_probs=225.1
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceEEeec
Q 000823 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISM 1003 (1267)
Q Consensus 929 ~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el-----g~~fi~I~~ 1003 (1267)
+..++|++++|+++++..|++.|..|+.+|+.|...++ .|++++||+||||||||..|+|+|..+ ...|+.-..
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~i-tpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNI-TPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhccc-CCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 34689999999999999999999999999999998885 466999999999999999999999888 456777778
Q ss_pred cccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecC
Q 000823 1004 SSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1083 (1267)
Q Consensus 1004 seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1083 (1267)
++..++|+|+.+..++.+|+.|++++|+|||+||||-|.+.|.... ...+..+..+|+.+|+|+.. ...|+||++||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq-Eqih~SIvSTLLaLmdGlds--RgqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ-EQIHASIVSTLLALMDGLDS--RGQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH-HHhhhhHHHHHHHhccCCCC--CCceEEEcccC
Confidence 8999999999999999999999999999999999999998886543 34567889999999999976 57899999999
Q ss_pred CCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhh
Q 000823 1084 RPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLL 1160 (1267)
Q Consensus 1084 ~p~~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~ 1160 (1267)
+++.+|++++| ||++.++|++|+.+.|.+|+...-.+..-. ...-+..||..|.||.|+||+
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlk--------------- 479 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLK--------------- 479 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHH---------------
Confidence 99999999999 999999999999999999999887765422 334478899999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhccccccc
Q 000823 1161 NLWSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1238 (1267)
Q Consensus 1161 ~~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~ 1238 (1267)
.+|.+|+..++++....... ...+.. -......|...||..|+.++.|+..+.
T Consensus 480 ---------------aLCTeAal~~~~r~~Pq~y~------s~~kl~----~d~~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 480 ---------------ALCTEAALIALRRSFPQIYS------SSDKLL----IDVALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred ---------------HHHHHHhhhhhccccCeeec------cccccc----ccchhhhhhhHhhhhhhhccCCCCCcc
Confidence 99999999999873221100 000000 011223499999999999999998875
No 44
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=4.9e-27 Score=301.58 Aligned_cols=177 Identities=22% Similarity=0.315 Sum_probs=144.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhc----------cC------------------------
Q 000823 967 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW----------FG------------------------ 1012 (1267)
Q Consensus 967 ~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~----------~G------------------------ 1012 (1267)
.+|++||||+||||||||+||+|+|.++++||+.|++++++..+ +|
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 36789999999999999999999999999999999999998654 12
Q ss_pred -------ccHH--HHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcc-cCCCcEEEEEec
Q 000823 1013 -------EGEK--YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-KDTERILVLAAT 1082 (1267)
Q Consensus 1013 -------e~e~--~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~-~~~~~VlVIaTT 1082 (1267)
..++ .++.+|+.|++.+||||||||||.+..+... ...+++|+..|++... ....+|+|||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~-------~ltL~qLLneLDg~~~~~s~~~VIVIAAT 1779 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESN-------YLSLGLLVNSLSRDCERCSTRNILVIAST 1779 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccc-------eehHHHHHHHhccccccCCCCCEEEEEeC
Confidence 2222 3788999999999999999999999754211 1236778888887642 234689999999
Q ss_pred CCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhh--CCCCC-cccHHHHHHHcCCCCHHHHHHHHhh
Q 000823 1083 NRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAK--EDLSP-DVDFDAIANMTDGYSGSDLKVIFLS 1150 (1267)
Q Consensus 1083 N~p~~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k--~~l~~-dvdl~~LA~~TeGySg~DL~~Lv~~ 1150 (1267)
|+|+.||||++| |||+.|.|+.|+..+|++++..++.. ..+.. .++++.+|+.|.||+|+||..++..
T Consensus 1780 NRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNE 1852 (2281)
T CHL00206 1780 HIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNE 1852 (2281)
T ss_pred CCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHH
Confidence 999999999999 99999999999999999999876543 33333 3689999999999999999933333
No 45
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.3e-27 Score=270.66 Aligned_cols=263 Identities=28% Similarity=0.441 Sum_probs=208.9
Q ss_pred ccchh--ccccHHHHHHH-HHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-eEEeeccccc
Q 000823 932 VTFDD--IGALENVKDTL-KELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-FINISMSSIT 1007 (1267)
Q Consensus 932 vt~~D--I~Gle~vk~~L-~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-fi~I~~seL~ 1007 (1267)
..|++ |+|++.--..+ ++.+..-.-.|+...+.++ +..+|+|||||||||||.+||.|.+.+++. ---++.++++
T Consensus 216 f~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi-~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL 294 (744)
T KOG0741|consen 216 FNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGI-KHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL 294 (744)
T ss_pred CChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCc-cceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH
Confidence 45554 78887665544 4455444556777777774 566999999999999999999999999654 4458999999
Q ss_pred hhccCccHHHHHHHHHHHHhc--------CCeEEEEccchhhhcCCCCCch-HHHHHHHHHhhhhhccCCcccCCCcEEE
Q 000823 1008 SKWFGEGEKYVKAVFSLASKI--------APSVIFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDTERILV 1078 (1267)
Q Consensus 1008 s~~~Ge~e~~v~~lF~~A~k~--------~PsIIfIDEID~L~~~r~~~~~-~~~~~~il~eLL~~ldgl~~~~~~~VlV 1078 (1267)
++|+|++|.+++.+|..|..- ..-||++||||.++..|++... ...+..+.|+|+..|||... -.+|+|
T Consensus 295 ~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq--LNNILV 372 (744)
T KOG0741|consen 295 NKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ--LNNILV 372 (744)
T ss_pred HHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh--hhcEEE
Confidence 999999999999999988532 2359999999999999877544 66778999999999999865 368999
Q ss_pred EEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhC----CCCCcccHHHHHHHcCCCCHHHHHHHHhhhh
Q 000823 1079 LAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKE----DLSPDVDFDAIANMTDGYSGSDLKVIFLSHS 1152 (1267)
Q Consensus 1079 IaTTN~p~~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~----~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~ 1152 (1267)
|+-||+++.+|++|+| ||...+++.+||+..|.+|++.+.+++ .+..|+|+++||.+|..|||++|+
T Consensus 373 IGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEle------- 445 (744)
T KOG0741|consen 373 IGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELE------- 445 (744)
T ss_pred EeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHH-------
Confidence 9999999999999999 999999999999999999999888764 466899999999999999999999
Q ss_pred hHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhc
Q 000823 1153 LICNVLLLNLWSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1232 (1267)
Q Consensus 1153 l~~~vr~~~~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~ 1232 (1267)
-+++.|...++.+.+.... + ............|+++||..|++.++
T Consensus 446 -----------------------glVksA~S~A~nR~vk~~~----------~-~~~~~~~~e~lkV~r~DFl~aL~dVk 491 (744)
T KOG0741|consen 446 -----------------------GLVKSAQSFAMNRHVKAGG----------K-VEVDPVAIENLKVTRGDFLNALEDVK 491 (744)
T ss_pred -----------------------HHHHHHHHHHHHhhhccCc----------c-eecCchhhhheeecHHHHHHHHHhcC
Confidence 4455555555544333210 0 00011123446799999999999999
Q ss_pred cccccc
Q 000823 1233 ASVSSE 1238 (1267)
Q Consensus 1233 pS~s~~ 1238 (1267)
|.+-..
T Consensus 492 PAFG~s 497 (744)
T KOG0741|consen 492 PAFGIS 497 (744)
T ss_pred cccCCC
Confidence 998754
No 46
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.93 E-value=4e-25 Score=251.82 Aligned_cols=168 Identities=21% Similarity=0.292 Sum_probs=143.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhccCccHHHHHHHHHHHHhc-----CCeEEEEccchhh
Q 000823 967 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI-----APSVIFVDEVDSM 1041 (1267)
Q Consensus 967 ~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~-----~PsIIfIDEID~L 1041 (1267)
.+++.+++||||||||||++|+++|++++++|+.++++++.++|+|++|+.++++|..|+.. +||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 46779999999999999999999999999999999999999999999999999999999754 6999999999999
Q ss_pred hcCCCCCchHHHHHHH-HHhhhhhccCCc----------ccCCCcEEEEEecCCCCCCcHHHHh--cccccccCCCCCHH
Q 000823 1042 LGRRENPGEHEAMRKM-KNEFMVNWDGLR----------TKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAP 1108 (1267)
Q Consensus 1042 ~~~r~~~~~~~~~~~i-l~eLL~~ldgl~----------~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~~~~Pd~e 1108 (1267)
++++... ......++ ..+||.++|+.. .....+|+||+|||+|+.||++|+| ||++.+ ..|+.+
T Consensus 225 ~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 225 AGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred CCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 9988643 23333444 478998888642 1235789999999999999999999 999865 589999
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHcCC
Q 000823 1109 NRAKILQVILAKEDLSPDVDFDAIANMTDG 1138 (1267)
Q Consensus 1109 eR~eIL~~ll~k~~l~~dvdl~~LA~~TeG 1138 (1267)
+|.+||+.++++.++. ..++..|+..+.|
T Consensus 302 ~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~g 330 (413)
T PLN00020 302 DRIGVVHGIFRDDGVS-REDVVKLVDTFPG 330 (413)
T ss_pred HHHHHHHHHhccCCCC-HHHHHHHHHcCCC
Confidence 9999999999988765 4667777776665
No 47
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.4e-25 Score=250.17 Aligned_cols=270 Identities=19% Similarity=0.260 Sum_probs=212.7
Q ss_pred HHHHHHHhcccCCccccccccccccccc--hhHHHHHHHHHhhcccCCcccccccccccCCCceeeecCCCchHHHHHHH
Q 000823 408 VFREDILAGILDGTNLQESFENFPYYLS--ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLA 485 (1267)
Q Consensus 408 ~~~~~~~~~i~~~~~~~vsfd~FPYyls--e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~rILLsgp~GsE~Yqe~La 485 (1267)
-|+.-+...+|.+++|.|+|++ +. |.+|+.|-+.+..+|+++++.+++ .|...++.|||.|||| +.+.|||
T Consensus 72 e~E~~i~s~~v~p~~I~v~f~D----IggLe~v~~~L~e~VilPlr~pelF~~g-~Ll~p~kGiLL~GPpG--~GKTmlA 144 (386)
T KOG0737|consen 72 EYEKRIASDVVPPSEIGVSFDD----IGGLEEVKDALQELVILPLRRPELFAKG-KLLRPPKGILLYGPPG--TGKTMLA 144 (386)
T ss_pred HHHHHhhhcccchhhceeehhh----ccchHHHHHHHHHHHhhcccchhhhccc-ccccCCccceecCCCC--chHHHHH
Confidence 3677789999999999999999 66 999999999999999999998855 5888999999999999 9999999
Q ss_pred HHHHhHhCCeEEEEeccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCC
Q 000823 486 KALAHYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQ 565 (1267)
Q Consensus 486 KALA~~f~a~LL~~D~~~~~~~~~~~e~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~ 565 (1267)
||+|++-||.++.|+.+.+.+
T Consensus 145 KA~Akeaga~fInv~~s~lt~----------------------------------------------------------- 165 (386)
T KOG0737|consen 145 KAIAKEAGANFINVSVSNLTS----------------------------------------------------------- 165 (386)
T ss_pred HHHHHHcCCCcceeeccccch-----------------------------------------------------------
Confidence 999999999999888744432
Q ss_pred CcccccccccccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceecccCCCCCCCCC
Q 000823 566 PKMETDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDL 645 (1267)
Q Consensus 566 ~~~~~~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgv~Fd~~~~~~~~l 645 (1267)
T Consensus 166 -------------------------------------------------------------------------------- 165 (386)
T KOG0737|consen 166 -------------------------------------------------------------------------------- 165 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc----CCcchhhHHHHHH---
Q 000823 646 GGQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKSRL--- 718 (1267)
Q Consensus 646 ~~~c~~~~~ff~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~----g~~~~~~~lk~~L--- 718 (1267)
||-|| ++.++.++|.++.. .+|.|||||||+.+++ +.-|+....|..|
T Consensus 166 --------------------KWfgE--~eKlv~AvFslAsK---l~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~ 220 (386)
T KOG0737|consen 166 --------------------KWFGE--AQKLVKAVFSLASK---LQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMAL 220 (386)
T ss_pred --------------------hhHHH--HHHHHHHHHhhhhh---cCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 34445 67799999999996 9999999999999997 3334445555554
Q ss_pred -----hcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEE
Q 000823 719 -----EKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVT 793 (1267)
Q Consensus 719 -----~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~Ie 793 (1267)
.+-+..|+|+||||++-+ +|+|+-||||..|.
T Consensus 221 WDGl~s~~~~rVlVlgATNRP~D-------------------------------------------lDeAiiRR~p~rf~ 257 (386)
T KOG0737|consen 221 WDGLSSKDSERVLVLGATNRPFD-------------------------------------------LDEAIIRRLPRRFH 257 (386)
T ss_pred hccccCCCCceEEEEeCCCCCcc-------------------------------------------HHHHHHHhCcceee
Confidence 222336999999999852 68999999999999
Q ss_pred EcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccchHHHHHHH-H----HHHHhhhc
Q 000823 794 IHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIV-G----WALSHHLM 868 (1267)
Q Consensus 794 I~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv-~----~A~s~~l~ 868 (1267)
|++|+.++|.+||+..|.. -....+++..+.+-.+.||+|.||..+|+.+++.+...+...- + -++..-+
T Consensus 258 V~lP~~~qR~kILkviLk~----e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~- 332 (386)
T KOG0737|consen 258 VGLPDAEQRRKILKVILKK----EKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLLDLDKAIADL- 332 (386)
T ss_pred eCCCchhhHHHHHHHHhcc----cccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhc-
Confidence 9999999999999988766 4556899999999999999999999999999988766544331 0 0000000
Q ss_pred cCCCCC--CcccccccchhHHHHHHHHHHH
Q 000823 869 QNPEAD--PDARLVLSCESIQYGIGIFQAI 896 (1267)
Q Consensus 869 ~~~~p~--~~~kl~Is~ed~~~al~~lq~l 896 (1267)
....+. .-...++..+||..+...+-..
T Consensus 333 ~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 333 KPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred cCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 000000 1124678888888887744443
No 48
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=9.3e-24 Score=237.25 Aligned_cols=236 Identities=17% Similarity=0.291 Sum_probs=188.8
Q ss_pred ccccccccccccccchhHHHHHHHHHhhcccCCccc-ccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEE
Q 000823 421 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 499 (1267)
Q Consensus 421 ~~~~vsfd~FPYylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~~ 499 (1267)
+.-+|||++.--. |.-+.-|.+++=.+|+|+++. +-+ + -.++.|||+|||| ..+++||||.|++-+|.||=+
T Consensus 144 e~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PElF~~~G--I-~PPKGVLLYGPPG--TGKTLLAkAVA~~T~AtFIrv 216 (406)
T COG1222 144 EKPDVTYEDIGGL--DEQIQEIREVVELPLKNPELFEELG--I-DPPKGVLLYGPPG--TGKTLLAKAVANQTDATFIRV 216 (406)
T ss_pred cCCCCChhhccCH--HHHHHHHHHHhcccccCHHHHHHcC--C-CCCCceEeeCCCC--CcHHHHHHHHHhccCceEEEe
Confidence 3456788884333 777889999999999999986 333 2 3567999999999 799999999999999999865
Q ss_pred eccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 000823 500 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 579 (1267)
Q Consensus 500 D~~~~~~~~~~~e~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (1267)
=.| +|.+
T Consensus 217 vgS----------------------------------ElVq--------------------------------------- 223 (406)
T COG1222 217 VGS----------------------------------ELVQ--------------------------------------- 223 (406)
T ss_pred ccH----------------------------------HHHH---------------------------------------
Confidence 321 2322
Q ss_pred ccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceecccCCCCCCCCCCCCCCCCccccccc
Q 000823 580 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 659 (1267)
Q Consensus 580 s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgv~Fd~~~~~~~~l~~~c~~~~~ff~~~ 659 (1267)
||+| +
T Consensus 224 ------------KYiG----------E----------------------------------------------------- 228 (406)
T COG1222 224 ------------KYIG----------E----------------------------------------------------- 228 (406)
T ss_pred ------------HHhc----------c-----------------------------------------------------
Confidence 7777 1
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc----CCcchhhHHHHHH----hcC-----CCcEE
Q 000823 660 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKSRL----EKL-----PDKVI 726 (1267)
Q Consensus 660 ~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~----g~~~~~~~lk~~L----~~l-----~g~Vv 726 (1267)
.-++++.||+++.+ +.|+||||||||.+-+ .+......+|.+| ..+ .|+|-
T Consensus 229 -------------GaRlVRelF~lAre---kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvK 292 (406)
T COG1222 229 -------------GARLVRELFELARE---KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVK 292 (406)
T ss_pred -------------chHHHHHHHHHHhh---cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeE
Confidence 23599999999999 9999999999998654 2222333444444 444 57999
Q ss_pred EEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHH
Q 000823 727 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 806 (1267)
Q Consensus 727 vIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~Iw 806 (1267)
||.|||++|--||| |-|||| |+++|+|++|+.++|.+||
T Consensus 293 VI~ATNR~D~LDPA-------LLRPGR----------------------------------~DRkIEfplPd~~gR~~Il 331 (406)
T COG1222 293 VIMATNRPDILDPA-------LLRPGR----------------------------------FDRKIEFPLPDEEGRAEIL 331 (406)
T ss_pred EEEecCCccccChh-------hcCCCc----------------------------------ccceeecCCCCHHHHHHHH
Confidence 99999999999999 899999 8899999999999999999
Q ss_pred HHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccccchhH
Q 000823 807 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESI 886 (1267)
Q Consensus 807 K~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~ 886 (1267)
++|+.+ ..+..+++....+-.+.|++||||.++|+++-++ |+ ++.+..++++||
T Consensus 332 ~IHtrk----M~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~-----------Ai-----------R~~R~~Vt~~DF 385 (406)
T COG1222 332 KIHTRK----MNLADDVDLELLARLTEGFSGADLKAICTEAGMF-----------AI-----------RERRDEVTMEDF 385 (406)
T ss_pred HHHhhh----ccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHH-----------HH-----------HhccCeecHHHH
Confidence 999988 6677889998889999999999999999984442 22 446778999999
Q ss_pred HHHHHHHH
Q 000823 887 QYGIGIFQ 894 (1267)
Q Consensus 887 ~~al~~lq 894 (1267)
..|...+.
T Consensus 386 ~~Av~KV~ 393 (406)
T COG1222 386 LKAVEKVV 393 (406)
T ss_pred HHHHHHHH
Confidence 99888554
No 49
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.5e-22 Score=238.49 Aligned_cols=249 Identities=25% Similarity=0.380 Sum_probs=196.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCch
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1050 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~ 1050 (1267)
..+||+|+||||||++++++|.++|.+++.++|.++.+...+..+......|..|++.+|+||||-++|.+....+. +.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-ge 510 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-GE 510 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-ch
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999755444 22
Q ss_pred HHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHH
Q 000823 1051 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFD 1130 (1267)
Q Consensus 1051 ~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~ 1130 (1267)
.......++.++. .+... ....+++||+|++..+.+++.+++.|-..|.++.|+.++|.+||+.++....+..++.+.
T Consensus 511 d~rl~~~i~~~ls-~e~~~-~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k 588 (953)
T KOG0736|consen 511 DARLLKVIRHLLS-NEDFK-FSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK 588 (953)
T ss_pred hHHHHHHHHHHHh-ccccc-CCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence 2223344454444 22222 235789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 000823 1131 AIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPAL 1210 (1267)
Q Consensus 1131 ~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~ 1210 (1267)
.+|.+|.||+.+||..++.+.......+..+. . +...+.. ..++.
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~-------------------~---l~g~~~~--------~~~~~----- 633 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKNK-------------------G---LAGGLQE--------EDEGE----- 633 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCchHHHHHHHHhh-------------------c---ccccchh--------ccccc-----
Confidence 99999999999999966554422111111100 0 0000000 00111
Q ss_pred CCCCCCcccCHHHHHHHHHHhccccccc-ccchhhhHHHHHhhCCCCCc
Q 000823 1211 SGCADIRPLNMDDFKYAHERVCASVSSE-SVNMSELLQWNELYGEGGSR 1258 (1267)
Q Consensus 1211 ~~~~~~~~Vt~eDf~~Al~~v~pS~s~~-~~~~~~~v~W~di~G~~~~r 1258 (1267)
.......+++|||.+|+.+++..++.. +++.+|.|.|+|+||.+.++
T Consensus 634 -~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK 681 (953)
T KOG0736|consen 634 -LCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVK 681 (953)
T ss_pred -cccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHH
Confidence 011226799999999999999999987 89999999999999987654
No 50
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=4.8e-20 Score=219.34 Aligned_cols=261 Identities=21% Similarity=0.275 Sum_probs=196.1
Q ss_pred hhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCceEEeeccccchhc
Q 000823 935 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKW 1010 (1267)
Q Consensus 935 ~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el----g~~fi~I~~seL~s~~ 1010 (1267)
.|.+-+..+|++..+....| +. ...+|||+||+|+|||.|++++++++ -+++..++|+.+.+..
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~-~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~ 475 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VF-RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS 475 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------cc-ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh
Confidence 35555566666555433322 11 23589999999999999999999998 4678889999998877
Q ss_pred cCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCc-hHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCc
Q 000823 1011 FGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG-EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1089 (1267)
Q Consensus 1011 ~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~-~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld 1089 (1267)
+....+.+..+|..+.+++|+||++|++|.|++...+.. +.......+..++..+-....+.+..+.||+|.+....|+
T Consensus 476 ~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 476 LEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 777788889999999999999999999999998433322 2222334444455433333344567789999999999999
Q ss_pred HHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhhH
Q 000823 1090 EAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDW 1166 (1267)
Q Consensus 1090 ~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~~ 1166 (1267)
+.+.+ +|+.++.++.|+..+|.+||+.++.+.... ...|++-++..|+||...||.
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~--------------------- 614 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLV--------------------- 614 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHH---------------------
Confidence 99887 899999999999999999999999886522 223445599999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhcccccccccchhhh-
Q 000823 1167 LLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSEL- 1245 (1267)
Q Consensus 1167 i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~~~~~~~- 1245 (1267)
-++.+|.+.++.+.+. .....+|.++|.++++.+.|...++.....+.
T Consensus 615 ---------ifVeRai~~a~leris----------------------~~~klltke~f~ksL~~F~P~aLR~ik~~k~tg 663 (952)
T KOG0735|consen 615 ---------IFVERAIHEAFLERIS----------------------NGPKLLTKELFEKSLKDFVPLALRGIKLVKSTG 663 (952)
T ss_pred ---------HHHHHHHHHHHHHHhc----------------------cCcccchHHHHHHHHHhcChHHhhhccccccCC
Confidence 5666666666533111 11137999999999999999999985554443
Q ss_pred HHHHHhhCCCCCcc
Q 000823 1246 LQWNELYGEGGSRR 1259 (1267)
Q Consensus 1246 v~W~di~G~~~~rk 1259 (1267)
.+|.|++|....++
T Consensus 664 i~w~digg~~~~k~ 677 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKK 677 (952)
T ss_pred CCceecccHHHHHH
Confidence 79999999866543
No 51
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.9e-19 Score=222.99 Aligned_cols=332 Identities=20% Similarity=0.216 Sum_probs=215.3
Q ss_pred cCCCeEEEEcchhhhhc-C----CcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccC
Q 000823 689 RSCPFILFMKDAEKSIA-G----NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAF 763 (1267)
Q Consensus 689 ~~~p~ILfi~di~~~l~-g----~~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~ 763 (1267)
..+.+||||||+|-+++ | .+++.++|+++|.+ |.+-|||+||..+|++
T Consensus 278 ~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~r--g~l~~IGatT~e~Y~k------------------------- 330 (898)
T KOG1051|consen 278 GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLAR--GGLWCIGATTLETYRK------------------------- 330 (898)
T ss_pred CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhc--CCeEEEecccHHHHHH-------------------------
Confidence 47899999999998776 3 45999999999954 8899999999887643
Q ss_pred CCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccce
Q 000823 764 PDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETL 843 (1267)
Q Consensus 764 ~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L 843 (1267)
+.+-|.+|.||| +.+.++.|..+....||.+..++ +..+|++.....+ .+..+.++..
T Consensus 331 -------------~iekdPalErrw-~l~~v~~pS~~~~~~iL~~l~~~----~e~~hg~~~s~~a----~~~a~~~s~~ 388 (898)
T KOG1051|consen 331 -------------CIEKDPALERRW-QLVLVPIPSVENLSLILPGLSER----YEVHHGVRISDES----LFSAAQLSAR 388 (898)
T ss_pred -------------HHhhCcchhhCc-ceeEeccCcccchhhhhhhhhhh----hccccCCcccccc----cccccchhhh
Confidence 111278899999 89999999999999999987766 7777877776643 5566899999
Q ss_pred eccccccchHHHHHHHHHHHHhhhccCCCCC--CcccccccchhHHHHHHHHHHHHH-----------------------
Q 000823 844 CIRDQSLTNESAEKIVGWALSHHLMQNPEAD--PDARLVLSCESIQYGIGIFQAIQN----------------------- 898 (1267)
Q Consensus 844 ~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~--~~~kl~Is~ed~~~al~~lq~l~~----------------------- 898 (1267)
++..+.|++.+++.+...++.........|. ...+..... +...+..++.-.+
T Consensus 389 ~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~~~~--~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~~l~ 466 (898)
T KOG1051|consen 389 YITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERVDIK--LQDEISELQKKWNQALHKRPSLESLAPSKPTQQPLS 466 (898)
T ss_pred hcccCcCchhcccHHHHHHHHHhhhhhhCCHHHHhhhhhhhh--hHHHHHHHHHhhhhhhccccccccccccccccccch
Confidence 9999999999999998888776664444443 110000000 1111111111000
Q ss_pred ----hhHhhhhhcc---ccCCHH---------------------------------------HHHHHHhcCcCCCCCCCc
Q 000823 899 ----ESKSLKKSLK---DVVTEN---------------------------------------EFEKRLLADVIPPSDIGV 932 (1267)
Q Consensus 899 ----~~k~lk~~~k---~~v~~~---------------------------------------e~e~~li~~ii~~~~~~v 932 (1267)
..++....+. ...... ++.. +...+...+....
T Consensus 467 ~~~~~~~s~~~~l~~~~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~~-~~s~~tgip~~~~ 545 (898)
T KOG1051|consen 467 ASVDSERSVIEELKLKKNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDISE-VVSRWTGIPVDRL 545 (898)
T ss_pred hhhccchhHHhhhccccCCcccchhhhcccCCCCcchhhhccccccchhhhhhcccccCCccchhh-hhhhhcCCchhhh
Confidence 0000000000 000000 0000 0111111111111
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhh------cCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEe
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFC------KGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA---GANFINI 1001 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~------~~~~~k--P~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I 1001 (1267)
+-.+-.-+..+.+.|.+.|.+|..+..... +.+..+ |...+||.||.|+|||-||+++|..+ .-.|+.|
T Consensus 546 ~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~Iri 625 (898)
T KOG1051|consen 546 AEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRL 625 (898)
T ss_pred hhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEe
Confidence 111111233344455555555544333222 223334 77889999999999999999999998 5679999
Q ss_pred ecccc--chhccCccHHH-----HHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCC-
Q 000823 1002 SMSSI--TSKWFGEGEKY-----VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT- 1073 (1267)
Q Consensus 1002 ~~seL--~s~~~Ge~e~~-----v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~- 1073 (1267)
+|+++ +++.+|.+.+| ..++++..++.+.+||+||||| .++..+++.|++.+|..+.++.
T Consensus 626 Dmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIE------------kAh~~v~n~llq~lD~GrltDs~ 693 (898)
T KOG1051|consen 626 DMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIE------------KAHPDVLNILLQLLDRGRLTDSH 693 (898)
T ss_pred chhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechh------------hcCHHHHHHHHHHHhcCccccCC
Confidence 99975 33455554443 3578889999999999999999 5567888888898887776543
Q ss_pred ------CcEEEEEecCC
Q 000823 1074 ------ERILVLAATNR 1084 (1267)
Q Consensus 1074 ------~~VlVIaTTN~ 1084 (1267)
.++|||+|+|.
T Consensus 694 Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 694 GREVDFKNAIFIMTSNV 710 (898)
T ss_pred CcEeeccceEEEEeccc
Confidence 58999999886
No 52
>CHL00181 cbbX CbbX; Provisional
Probab=99.81 E-value=8.6e-19 Score=199.03 Aligned_cols=178 Identities=18% Similarity=0.288 Sum_probs=137.2
Q ss_pred hhccccHHHHHHHHHHHhCccCchhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh-------CCceEEeeccc
Q 000823 935 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSS 1005 (1267)
Q Consensus 935 ~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~k--P~~gVLL~GPpGTGKT~LAkALA~el-------g~~fi~I~~se 1005 (1267)
.+++|++++|+++++++.. +.....+.+.+... +..++||+||||||||++|+++|+.+ ..+++.+++.+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 3799999999999998865 33344444444433 33459999999999999999999876 23699999999
Q ss_pred cchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC
Q 000823 1006 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1267)
Q Consensus 1006 L~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1267)
+.+.++|+.+..+..+|+.|. ++||||||++.|...+.. ......+.+.|+..|+.. ..+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcH
Confidence 999999998887888888764 489999999998643321 223356667777777653 3457788877642
Q ss_pred -----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCC
Q 000823 1086 -----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDL 1123 (1267)
Q Consensus 1086 -----~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l 1123 (1267)
..++|++++||+.+|.|+.++.+++.+|++.++.+.+.
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~ 214 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQY 214 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcC
Confidence 24569999999999999999999999999999987653
No 53
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.4e-19 Score=202.68 Aligned_cols=249 Identities=17% Similarity=0.234 Sum_probs=188.4
Q ss_pred ccccccccccccccchhHHHHHHHHHhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 000823 421 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 500 (1267)
Q Consensus 421 ~~~~vsfd~FPYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~~D 500 (1267)
++.+|.||+.=-. ++.|.+|-+|+..++..++|++..+ ..=+.|||-|||| ..++|||||+|-+.|..|..+-
T Consensus 205 ~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~F~Gir---rPWkgvLm~GPPG--TGKTlLAKAvATEc~tTFFNVS 277 (491)
T KOG0738|consen 205 RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEFFKGIR---RPWKGVLMVGPPG--TGKTLLAKAVATECGTTFFNVS 277 (491)
T ss_pred cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHHHhhcc---cccceeeeeCCCC--CcHHHHHHHHHHhhcCeEEEec
Confidence 4667999983332 8999999999999999999887754 5668999999999 7999999999999986655554
Q ss_pred ccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 000823 501 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 580 (1267)
Q Consensus 501 ~~~~~~~~~~~e~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s 580 (1267)
|+.|
T Consensus 278 sstl---------------------------------------------------------------------------- 281 (491)
T KOG0738|consen 278 SSTL---------------------------------------------------------------------------- 281 (491)
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 4222
Q ss_pred cccccccCCeeEEeccCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceecccCCCCCCCCCCCCCCCCcccccccc
Q 000823 581 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 660 (1267)
Q Consensus 581 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgv~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 660 (1267)
T Consensus 282 -------------------------------------------------------------------------------- 281 (491)
T KOG0738|consen 282 -------------------------------------------------------------------------------- 281 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc-----CCcchhhHHHHHHhcC----------CCcE
Q 000823 661 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKL----------PDKV 725 (1267)
Q Consensus 661 ~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~-----g~~~~~~~lk~~L~~l----------~g~V 725 (1267)
.|||-|| .+.+|+.||+.+.- .-|.+|||||||.+.. +--++...||+.|.-. +.-|
T Consensus 282 ---tSKwRGe--SEKlvRlLFemARf---yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~V 353 (491)
T KOG0738|consen 282 ---TSKWRGE--SEKLVRLLFEMARF---YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVV 353 (491)
T ss_pred ---hhhhccc--hHHHHHHHHHHHHH---hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeE
Confidence 1345566 78899999999999 9999999999999775 3345667788877211 1239
Q ss_pred EEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHH
Q 000823 726 IVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLAS 805 (1267)
Q Consensus 726 vvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~I 805 (1267)
.|+.|||.+-. +|+||.|||+..|+|+||+.++|...
T Consensus 354 mVLAATN~PWd-------------------------------------------iDEAlrRRlEKRIyIPLP~~~~R~~L 390 (491)
T KOG0738|consen 354 MVLAATNFPWD-------------------------------------------IDEALRRRLEKRIYIPLPDAEARSAL 390 (491)
T ss_pred EEEeccCCCcc-------------------------------------------hHHHHHHHHhhheeeeCCCHHHHHHH
Confidence 99999999873 68889999999999999999999999
Q ss_pred HHHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccC-CC-CCCcccccccc
Q 000823 806 WKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQN-PE-ADPDARLVLSC 883 (1267)
Q Consensus 806 wK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~-~~-p~~~~kl~Is~ 883 (1267)
+++.|.. ......+++...+-+..||+|+||..+|.++.+..+ ...+....-.. .. ....-+.++..
T Consensus 391 i~~~l~~----~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~m-------RR~i~g~~~~ei~~lakE~~~~pv~~ 459 (491)
T KOG0738|consen 391 IKILLRS----VELDDPVNLEDLAERSEGYSGADITNVCREASMMAM-------RRKIAGLTPREIRQLAKEEPKMPVTN 459 (491)
T ss_pred HHHhhcc----ccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHH-------HHHHhcCCcHHhhhhhhhccccccch
Confidence 9988766 777788889888889999999999999997443221 11111110000 00 01223467888
Q ss_pred hhHHHHHHHHH
Q 000823 884 ESIQYGIGIFQ 894 (1267)
Q Consensus 884 ed~~~al~~lq 894 (1267)
+||+.|+...+
T Consensus 460 ~Dfe~Al~~v~ 470 (491)
T KOG0738|consen 460 EDFEEALRKVR 470 (491)
T ss_pred hhHHHHHHHcC
Confidence 88988877444
No 54
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.2e-18 Score=195.08 Aligned_cols=213 Identities=26% Similarity=0.427 Sum_probs=166.2
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhccC
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 1012 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~G 1012 (1267)
.|++++-...+++.|..+....-. ......|.++||||||||||||++|+-||...|..+-.+...++.- .-.
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaN------TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~ 425 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATAN------TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGA 425 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcc------cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cch
Confidence 366777777788887776653211 1122456789999999999999999999999999988887776532 112
Q ss_pred ccHHHHHHHHHHHHhcCCe-EEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHH
Q 000823 1013 EGEKYVKAVFSLASKIAPS-VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEA 1091 (1267)
Q Consensus 1013 e~e~~v~~lF~~A~k~~Ps-IIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~a 1091 (1267)
+.-..|+++|+.+.++... +|||||.|.++..|......++.+..+|.||.--.. ....|+++.+||+|.+||.+
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlDsA 501 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----QSRDIVLVLATNRPGDLDSA 501 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc----cccceEEEeccCCccchhHH
Confidence 3345789999999987754 789999999999998888888889999998743222 24679999999999999999
Q ss_pred HHhcccccccCCCCCHHHHHHHHHHHHhhCCCC---------------------------CcccHHHHHHHcCCCCHHHH
Q 000823 1092 VIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS---------------------------PDVDFDAIANMTDGYSGSDL 1144 (1267)
Q Consensus 1092 LlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~---------------------------~dvdl~~LA~~TeGySg~DL 1144 (1267)
+-.|||.+|+|++|..++|.++|..++.+.-+. .+.-+.+.|+.|+||||++|
T Consensus 502 V~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREi 581 (630)
T KOG0742|consen 502 VNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREI 581 (630)
T ss_pred HHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHH
Confidence 999999999999999999999999998763111 01125778999999999999
Q ss_pred HHHHhhhhhHHH
Q 000823 1145 KVIFLSHSLICN 1156 (1267)
Q Consensus 1145 ~~Lv~~a~l~~~ 1156 (1267)
.+|+........
T Consensus 582 akLva~vQAavY 593 (630)
T KOG0742|consen 582 AKLVASVQAAVY 593 (630)
T ss_pred HHHHHHHHHHHh
Confidence 988876544433
No 55
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=2.2e-18 Score=193.04 Aligned_cols=179 Identities=17% Similarity=0.268 Sum_probs=135.1
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCC--CCCceEEEEcCCCChHHHHHHHHHHHh-------CCceEEeec
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLT--KPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISM 1003 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~--kP~~gVLL~GPpGTGKT~LAkALA~el-------g~~fi~I~~ 1003 (1267)
.+++++|++++|+++++++.+...... ..+.+.. ....++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~-~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEK-RKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHH-HHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 356899999999999998876533322 1222222 223579999999999999999999875 347889999
Q ss_pred cccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecC
Q 000823 1004 SSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1083 (1267)
Q Consensus 1004 seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1083 (1267)
+++.+.++|+.+..+..+|..|. ++||||||+|.|.... ........++.++..++.. ..++++|+++.
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~----~~~~~~~~i~~Ll~~~e~~----~~~~~vila~~ 151 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG----EKDFGKEAIDTLVKGMEDN----RNEFVLILAGY 151 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC----ccchHHHHHHHHHHHHhcc----CCCEEEEecCC
Confidence 99999999999998999998775 4899999999985321 1122345566677766654 34566666654
Q ss_pred CC-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCC
Q 000823 1084 RP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDL 1123 (1267)
Q Consensus 1084 ~p-----~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l 1123 (1267)
.. ..++|++++||+..|.|+.++.+++.+|++.++...+.
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~ 196 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREY 196 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 32 24788999999989999999999999999999987654
No 56
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.78 E-value=5.8e-18 Score=192.10 Aligned_cols=176 Identities=17% Similarity=0.259 Sum_probs=137.8
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCC--CCCceEEEEcCCCChHHHHHHHHHHHhC-------CceEEeecccc
Q 000823 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLT--KPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISMSSI 1006 (1267)
Q Consensus 936 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~--kP~~gVLL~GPpGTGKT~LAkALA~elg-------~~fi~I~~seL 1006 (1267)
+++|++++|+++.+++.. +..++.+.+.++. .|..++||+||||||||++|+++|+.+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998876 4444555544443 2556899999999999999999998772 37999999999
Q ss_pred chhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-
Q 000823 1007 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP- 1085 (1267)
Q Consensus 1007 ~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p- 1085 (1267)
++.++|..+..+..+|+.|.. +|||||||+.|.+.+.. ......+.+.|+..|+.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 999999988888888887754 89999999998643321 223345666777777643 3567788877643
Q ss_pred -C---CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCC
Q 000823 1086 -F---DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKED 1122 (1267)
Q Consensus 1086 -~---~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~ 1122 (1267)
+ .++|++++||+..|.|+.++.+++.+|++.++.+..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~ 212 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQ 212 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhc
Confidence 2 358999999999999999999999999999998864
No 57
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=9.4e-19 Score=194.14 Aligned_cols=190 Identities=28% Similarity=0.392 Sum_probs=153.4
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCceE
Q 000823 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---------GANFI 999 (1267)
Q Consensus 929 ~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---------g~~fi 999 (1267)
+..--|+.++--.++|++|..++...+...+.-....+....+-+||+||||||||+|++|+|+.+ ...++
T Consensus 136 eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 136 EFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred hhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 344567777777889999999887655544433333333334569999999999999999999988 35689
Q ss_pred EeeccccchhccCccHHHHHHHHHHHHhcC-----CeEEEEccchhhhcCCCC---CchHHHHHHHHHhhhhhccCCccc
Q 000823 1000 NISMSSITSKWFGEGEKYVKAVFSLASKIA-----PSVIFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVNWDGLRTK 1071 (1267)
Q Consensus 1000 ~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~-----PsIIfIDEID~L~~~r~~---~~~~~~~~~il~eLL~~ldgl~~~ 1071 (1267)
++++..++++|++++.+.+.++|......- --.++|||+++|...|.. ..+..-.-++.|.++.++|.+..
T Consensus 216 EinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~- 294 (423)
T KOG0744|consen 216 EINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR- 294 (423)
T ss_pred EEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc-
Confidence 999999999999999999999998876542 236779999999876632 23334446889999999999965
Q ss_pred CCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000823 1072 DTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1120 (1267)
Q Consensus 1072 ~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k 1120 (1267)
..+|++++|+|-.+.+|.++..|-|-+.+++.|+...|.+|++.++..
T Consensus 295 -~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 295 -YPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred -CCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999998865
No 58
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.77 E-value=1.8e-18 Score=171.13 Aligned_cols=130 Identities=38% Similarity=0.648 Sum_probs=115.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhccCccHHHHHHHHHHHHhcC-CeEEEEccchhhhcCCCCCchH
Q 000823 973 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA-PSVIFVDEVDSMLGRRENPGEH 1051 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~-PsIIfIDEID~L~~~r~~~~~~ 1051 (1267)
|||+||||||||++|+++|+.++.+++.+++.++.+.+.+..+..+..+|..+.+.. |+||||||+|.+++.. .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 799999999999999999999999999999999998889999999999999999888 9999999999999776 33445
Q ss_pred HHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHH-hcccccccCCC
Q 000823 1052 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVI-RRLPRRLMVNL 1104 (1267)
Q Consensus 1052 ~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLl-rRFd~vI~~~~ 1104 (1267)
.....+++.|+..++..... ..+++||+|||.++.+++.++ +||+.+|++++
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 56677888888888887653 467999999999999999999 99999888763
No 59
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.1e-17 Score=192.17 Aligned_cols=240 Identities=21% Similarity=0.323 Sum_probs=176.1
Q ss_pred HHhcccCCccccccccccccccchhHHHHHHHHHhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHh
Q 000823 413 ILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYF 492 (1267)
Q Consensus 413 ~~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f 492 (1267)
+...|.+-+.++|+|++.=-- |..|..|-+-+- .||.+. ||++==--.++.|||.|||| ..+.|||||.|-+-
T Consensus 289 l~~ev~p~~~~nv~F~dVkG~--DEAK~ELeEiVe-fLkdP~--kftrLGGKLPKGVLLvGPPG--TGKTlLARAvAGEA 361 (752)
T KOG0734|consen 289 LDSEVDPEQMKNVTFEDVKGV--DEAKQELEEIVE-FLKDPT--KFTRLGGKLPKGVLLVGPPG--TGKTLLARAVAGEA 361 (752)
T ss_pred cccccChhhhcccccccccCh--HHHHHHHHHHHH-HhcCcH--HhhhccCcCCCceEEeCCCC--CchhHHHHHhhccc
Confidence 446778888889999994333 999999999876 566643 56553345688999999999 79999999999999
Q ss_pred CCeEEEEeccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 000823 493 GAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDT 572 (1267)
Q Consensus 493 ~a~LL~~D~~~~~~~~~~~e~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 572 (1267)
|+++.-- .| . |+ +.
T Consensus 362 ~VPFF~~-----sG-S-----EF-----------------------dE-------------------------------- 375 (752)
T KOG0734|consen 362 GVPFFYA-----SG-S-----EF-----------------------DE-------------------------------- 375 (752)
T ss_pred CCCeEec-----cc-c-----ch-----------------------hh--------------------------------
Confidence 9886321 12 0 11 00
Q ss_pred cccccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceecccCCCCCCCCCCCCCCCC
Q 000823 573 TLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGG 652 (1267)
Q Consensus 573 ~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgv~Fd~~~~~~~~l~~~c~~~ 652 (1267)
-|||
T Consensus 376 -------------------m~VG--------------------------------------------------------- 379 (752)
T KOG0734|consen 376 -------------------MFVG--------------------------------------------------------- 379 (752)
T ss_pred -------------------hhhc---------------------------------------------------------
Confidence 2333
Q ss_pred cccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc---CCcchh---hHHHHHHhcC-----
Q 000823 653 HGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA---GNSDSY---STFKSRLEKL----- 721 (1267)
Q Consensus 653 ~~ff~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~---g~~~~~---~~lk~~L~~l----- 721 (1267)
+| -+-|+.||..++. ..|+||||||||. ++ .+.+.+ ..|--+|-.+
T Consensus 380 ------vG-------------ArRVRdLF~aAk~---~APcIIFIDEiDa-vG~kR~~~~~~y~kqTlNQLLvEmDGF~q 436 (752)
T KOG0734|consen 380 ------VG-------------ARRVRDLFAAAKA---RAPCIIFIDEIDA-VGGKRNPSDQHYAKQTLNQLLVEMDGFKQ 436 (752)
T ss_pred ------cc-------------HHHHHHHHHHHHh---cCCeEEEEechhh-hcccCCccHHHHHHHHHHHHHHHhcCcCc
Confidence 11 2367889999999 9999999999998 55 222222 1222222222
Q ss_pred CCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHH
Q 000823 722 PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEA 801 (1267)
Q Consensus 722 ~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~ 801 (1267)
...|+||||||++|+-|+| |.|||| |+++|.|+.||..+
T Consensus 437 NeGiIvigATNfpe~LD~A-------L~RPGR----------------------------------FD~~v~Vp~PDv~G 475 (752)
T KOG0734|consen 437 NEGIIVIGATNFPEALDKA-------LTRPGR----------------------------------FDRHVTVPLPDVRG 475 (752)
T ss_pred CCceEEEeccCChhhhhHH-------hcCCCc----------------------------------cceeEecCCCCccc
Confidence 3489999999999999999 999999 99999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccc
Q 000823 802 LLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVL 881 (1267)
Q Consensus 802 Rl~IwK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~I 881 (1267)
|.+||+.++.+ +....+|+....+-.+.|++||||..++- .|+-++.. +....+
T Consensus 476 R~eIL~~yl~k----i~~~~~VD~~iiARGT~GFsGAdLaNlVN---------------qAAlkAa~-------dga~~V 529 (752)
T KOG0734|consen 476 RTEILKLYLSK----IPLDEDVDPKIIARGTPGFSGADLANLVN---------------QAALKAAV-------DGAEMV 529 (752)
T ss_pred HHHHHHHHHhc----CCcccCCCHhHhccCCCCCchHHHHHHHH---------------HHHHHHHh-------cCcccc
Confidence 99999999887 77778898888888899999999977543 33323322 234567
Q ss_pred cchhHHHHHH
Q 000823 882 SCESIQYGIG 891 (1267)
Q Consensus 882 s~ed~~~al~ 891 (1267)
++.+|+.+..
T Consensus 530 tM~~LE~akD 539 (752)
T KOG0734|consen 530 TMKHLEFAKD 539 (752)
T ss_pred cHHHHhhhhh
Confidence 7777776654
No 60
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.72 E-value=3.2e-17 Score=197.59 Aligned_cols=225 Identities=20% Similarity=0.249 Sum_probs=162.7
Q ss_pred hhhhHHHHHHHHhcccCCccccccccccccccchhHHHHHHHHHhhcccCCcccccccccccCCCceeeecCCCchHHHH
Q 000823 403 SLRCAVFREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQE 482 (1267)
Q Consensus 403 ~~~~~~~~~~~~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~rILLsgp~GsE~Yqe 482 (1267)
..++|.+++. ++++-...+++|++.-.+ ++.|..|....-.+.. ....|+ + +.++.|||+|||| +.+.
T Consensus 206 ~~k~q~~~~~---~~le~~~~~~~~~dvgGl--~~lK~~l~~~~~~~~~--~~~~~g--l-~~pkGILL~GPpG--TGKT 273 (489)
T CHL00195 206 EEKKQIISQT---EILEFYSVNEKISDIGGL--DNLKDWLKKRSTSFSK--QASNYG--L-PTPRGLLLVGIQG--TGKS 273 (489)
T ss_pred HHHHHHHhhh---ccccccCCCCCHHHhcCH--HHHHHHHHHHHHHhhH--HHHhcC--C-CCCceEEEECCCC--CcHH
Confidence 3445555443 456666678889886664 8888888764322211 112333 3 4678999999999 8999
Q ss_pred HHHHHHHhHhCCeEEEEeccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCC
Q 000823 483 MLAKALAHYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGP 562 (1267)
Q Consensus 483 ~LaKALA~~f~a~LL~~D~~~~~~~~~~~e~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~ 562 (1267)
+||||+|++++++|+.+|.+.|++
T Consensus 274 llAkaiA~e~~~~~~~l~~~~l~~-------------------------------------------------------- 297 (489)
T CHL00195 274 LTAKAIANDWQLPLLRLDVGKLFG-------------------------------------------------------- 297 (489)
T ss_pred HHHHHHHHHhCCCEEEEEhHHhcc--------------------------------------------------------
Confidence 999999999999999999754443
Q ss_pred CCCCcccccccccccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceecccCCCCCC
Q 000823 563 ESQPKMETDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDG 642 (1267)
Q Consensus 563 ~~~~~~~~~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgv~Fd~~~~~~ 642 (1267)
+|+
T Consensus 298 -----------------------------~~v------------------------------------------------ 300 (489)
T CHL00195 298 -----------------------------GIV------------------------------------------------ 300 (489)
T ss_pred -----------------------------ccc------------------------------------------------
Confidence 122
Q ss_pred CCCCCCCCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCc-----chh----hH
Q 000823 643 VDLGGQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS-----DSY----ST 713 (1267)
Q Consensus 643 ~~l~~~c~~~~~ff~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~g~~-----~~~----~~ 713 (1267)
|+ .+..++.+|+.+.. ..|+||||||||+++.+.. ... ..
T Consensus 301 --------------------------Ge--se~~l~~~f~~A~~---~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~ 349 (489)
T CHL00195 301 --------------------------GE--SESRMRQMIRIAEA---LSPCILWIDEIDKAFSNSESKGDSGTTNRVLAT 349 (489)
T ss_pred --------------------------Ch--HHHHHHHHHHHHHh---cCCcEEEehhhhhhhccccCCCCchHHHHHHHH
Confidence 22 33467888888877 8999999999999886311 112 22
Q ss_pred HHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEE
Q 000823 714 FKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVT 793 (1267)
Q Consensus 714 lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~Ie 793 (1267)
|-..|.....+|+|||+||+++..|++ |.|+|| |+..|+
T Consensus 350 lL~~l~~~~~~V~vIaTTN~~~~Ld~a-------llR~GR----------------------------------FD~~i~ 388 (489)
T CHL00195 350 FITWLSEKKSPVFVVATANNIDLLPLE-------ILRKGR----------------------------------FDEIFF 388 (489)
T ss_pred HHHHHhcCCCceEEEEecCChhhCCHH-------HhCCCc----------------------------------CCeEEE
Confidence 233334446789999999999988888 777888 889999
Q ss_pred EcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceecc
Q 000823 794 IHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIR 846 (1267)
Q Consensus 794 I~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~ 846 (1267)
|++|+.++|.+||+.++.+... ....+++....+-.+.||+|+||+.+|.+
T Consensus 389 v~lP~~~eR~~Il~~~l~~~~~--~~~~~~dl~~La~~T~GfSGAdI~~lv~e 439 (489)
T CHL00195 389 LDLPSLEEREKIFKIHLQKFRP--KSWKKYDIKKLSKLSNKFSGAEIEQSIIE 439 (489)
T ss_pred eCCcCHHHHHHHHHHHHhhcCC--CcccccCHHHHHhhcCCCCHHHHHHHHHH
Confidence 9999999999999999877321 11235666677778899999999888775
No 61
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.72 E-value=5.4e-17 Score=191.75 Aligned_cols=237 Identities=15% Similarity=0.250 Sum_probs=176.8
Q ss_pred CccccccccccccccchhHHHHHHHHHhhcccCCccc-ccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEE
Q 000823 420 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 498 (1267)
Q Consensus 420 ~~~~~vsfd~FPYylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~ 498 (1267)
-+.-+|+|++.--+ |..|..|.++.-..|+++++. +++ + ..++.|||+|||| +.+++||||+|++.++.++.
T Consensus 137 ~~~p~v~~~digGl--~~~k~~l~~~v~~pl~~~~~~~~~G--l-~~pkgvLL~GppG--TGKT~LAkalA~~l~~~fi~ 209 (398)
T PTZ00454 137 SEKPDVTYSDIGGL--DIQKQEIREAVELPLTCPELYEQIG--I-DPPRGVLLYGPPG--TGKTMLAKAVAHHTTATFIR 209 (398)
T ss_pred cCCCCCCHHHcCCH--HHHHHHHHHHHHHHhcCHHHHHhcC--C-CCCceEEEECCCC--CCHHHHHHHHHHhcCCCEEE
Confidence 35678999996665 999999999999999998765 444 3 3567899999999 89999999999998887766
Q ss_pred EeccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 000823 499 FDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAG 578 (1267)
Q Consensus 499 ~D~~~~~~~~~~~e~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (1267)
+..+.+..
T Consensus 210 i~~s~l~~------------------------------------------------------------------------ 217 (398)
T PTZ00454 210 VVGSEFVQ------------------------------------------------------------------------ 217 (398)
T ss_pred EehHHHHH------------------------------------------------------------------------
Confidence 54321110
Q ss_pred cccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceecccCCCCCCCCCCCCCCCCcccccc
Q 000823 579 TSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCN 658 (1267)
Q Consensus 579 ~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgv~Fd~~~~~~~~l~~~c~~~~~ff~~ 658 (1267)
+|+
T Consensus 218 -------------k~~---------------------------------------------------------------- 220 (398)
T PTZ00454 218 -------------KYL---------------------------------------------------------------- 220 (398)
T ss_pred -------------Hhc----------------------------------------------------------------
Confidence 122
Q ss_pred cccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC--------cchhhHHHHHHhcC-----CCcE
Q 000823 659 VTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLEKL-----PDKV 725 (1267)
Q Consensus 659 ~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~g~--------~~~~~~lk~~L~~l-----~g~V 725 (1267)
|+ ....++.+|+.+.. .+|.||||||||.++..+ .+....+...|..+ .++|
T Consensus 221 ----------ge--~~~~lr~lf~~A~~---~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 221 ----------GE--GPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred ----------ch--hHHHHHHHHHHHHh---cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 22 23467788888877 899999999999976522 11222333333332 3589
Q ss_pred EEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHH
Q 000823 726 IVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLAS 805 (1267)
Q Consensus 726 vvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~I 805 (1267)
+||++||+++..|++ |.|||| |+.+|+|++|+.++|..|
T Consensus 286 ~VI~aTN~~d~LDpA-------llR~GR----------------------------------fd~~I~~~~P~~~~R~~I 324 (398)
T PTZ00454 286 KVIMATNRADTLDPA-------LLRPGR----------------------------------LDRKIEFPLPDRRQKRLI 324 (398)
T ss_pred EEEEecCCchhCCHH-------HcCCCc----------------------------------ccEEEEeCCcCHHHHHHH
Confidence 999999999988888 778888 889999999999999999
Q ss_pred HHHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccccchh
Q 000823 806 WKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCES 885 (1267)
Q Consensus 806 wK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed 885 (1267)
|+.++.+ .....+++....+..+.||+|+||..+|.++.. .|+ ......|+.+|
T Consensus 325 l~~~~~~----~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~-----------~A~-----------r~~~~~i~~~d 378 (398)
T PTZ00454 325 FQTITSK----MNLSEEVDLEDFVSRPEKISAADIAAICQEAGM-----------QAV-----------RKNRYVILPKD 378 (398)
T ss_pred HHHHHhc----CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH-----------HHH-----------HcCCCccCHHH
Confidence 9988876 445567777777888999999999999887322 111 11245788999
Q ss_pred HHHHHHHHH
Q 000823 886 IQYGIGIFQ 894 (1267)
Q Consensus 886 ~~~al~~lq 894 (1267)
|..|+..+.
T Consensus 379 f~~A~~~v~ 387 (398)
T PTZ00454 379 FEKGYKTVV 387 (398)
T ss_pred HHHHHHHHH
Confidence 999887543
No 62
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.2e-17 Score=180.05 Aligned_cols=134 Identities=16% Similarity=0.243 Sum_probs=106.1
Q ss_pred ccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc----CCcchhhHHHHHHh-------cCCCcEEEEee
Q 000823 662 LRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKSRLE-------KLPDKVIVIGS 730 (1267)
Q Consensus 662 ~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~----g~~~~~~~lk~~L~-------~l~g~VvvIGs 730 (1267)
|-.|||.|| .+.++..|||.+.+ +.|.||||||||.+.+ +..++...+|..|. .-...|+|+|+
T Consensus 201 DLvSKWmGE--SEkLVknLFemARe---~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgA 275 (439)
T KOG0739|consen 201 DLVSKWMGE--SEKLVKNLFEMARE---NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGA 275 (439)
T ss_pred HHHHHHhcc--HHHHHHHHHHHHHh---cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEec
Confidence 445789999 99999999999999 9999999999995443 45677777887772 11458999999
Q ss_pred cccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhh
Q 000823 731 HTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 810 (1267)
Q Consensus 731 t~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qL 810 (1267)
||.+-. .|.+|.|||+..|+|+||+..+|...++.|+
T Consensus 276 TNiPw~-------------------------------------------LDsAIRRRFekRIYIPLPe~~AR~~MF~lhl 312 (439)
T KOG0739|consen 276 TNIPWV-------------------------------------------LDSAIRRRFEKRIYIPLPEAHARARMFKLHL 312 (439)
T ss_pred CCCchh-------------------------------------------HHHHHHHHhhcceeccCCcHHHhhhhheecc
Confidence 998852 5899999999999999999999999999887
Q ss_pred hhhhhhhhhccCchhHHHHhhhcCCCCccccceecc
Q 000823 811 DRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIR 846 (1267)
Q Consensus 811 e~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~ 846 (1267)
-.--..+..+ +.-+.+-.+-||+|+|++-++..
T Consensus 313 G~tp~~LT~~---d~~eL~~kTeGySGsDisivVrD 345 (439)
T KOG0739|consen 313 GDTPHVLTEQ---DFKELARKTEGYSGSDISIVVRD 345 (439)
T ss_pred CCCccccchh---hHHHHHhhcCCCCcCceEEEehh
Confidence 6522222222 34445567889999999877764
No 63
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.71 E-value=8e-17 Score=190.33 Aligned_cols=237 Identities=20% Similarity=0.312 Sum_probs=175.6
Q ss_pred ccccccccccccccchhHHHHHHHHHhhcccCCccc-ccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEE
Q 000823 421 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 499 (1267)
Q Consensus 421 ~~~~vsfd~FPYylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~~ 499 (1267)
+..+++|+++... |..+..|.+....++++++.. +++ -..++.|||+|||| ..+++||||+|++++++++.+
T Consensus 124 ~~p~~~~~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g---~~~p~gvLL~GppG--tGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 124 ESPNVTYEDIGGL--EEQIREVREAVELPLKKPELFEEVG---IEPPKGVLLYGPPG--TGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCCCCHHHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcC---CCCCCceEEECCCC--CChHHHHHHHHHHhCCCEEEe
Confidence 4557899997776 888999999999999998765 343 23356899999999 899999999999999888777
Q ss_pred eccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 000823 500 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 579 (1267)
Q Consensus 500 D~~~~~~~~~~~e~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (1267)
+.+.|..
T Consensus 197 ~~~~l~~------------------------------------------------------------------------- 203 (389)
T PRK03992 197 VGSELVQ------------------------------------------------------------------------- 203 (389)
T ss_pred ehHHHhH-------------------------------------------------------------------------
Confidence 5433321
Q ss_pred ccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceecccCCCCCCCCCCCCCCCCccccccc
Q 000823 580 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 659 (1267)
Q Consensus 580 s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgv~Fd~~~~~~~~l~~~c~~~~~ff~~~ 659 (1267)
+|+|
T Consensus 204 ------------~~~g---------------------------------------------------------------- 207 (389)
T PRK03992 204 ------------KFIG---------------------------------------------------------------- 207 (389)
T ss_pred ------------hhcc----------------------------------------------------------------
Confidence 1122
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcC--------CcchhhHHHHHHhcC-----CCcEE
Q 000823 660 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG--------NSDSYSTFKSRLEKL-----PDKVI 726 (1267)
Q Consensus 660 ~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~g--------~~~~~~~lk~~L~~l-----~g~Vv 726 (1267)
+ ....++.+|+.+.. ..|.||||||||.++.. ..+....+...|..+ .++|+
T Consensus 208 ----------~--~~~~i~~~f~~a~~---~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 272 (389)
T PRK03992 208 ----------E--GARLVRELFELARE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVK 272 (389)
T ss_pred ----------c--hHHHHHHHHHHHHh---cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEE
Confidence 1 23367788888877 89999999999997642 122222333333222 25899
Q ss_pred EEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHH
Q 000823 727 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 806 (1267)
Q Consensus 727 vIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~Iw 806 (1267)
|||+||+++..+++ |.|||| |+..|+|++|+.++|.+||
T Consensus 273 VI~aTn~~~~ld~a-------llRpgR----------------------------------fd~~I~v~~P~~~~R~~Il 311 (389)
T PRK03992 273 IIAATNRIDILDPA-------ILRPGR----------------------------------FDRIIEVPLPDEEGRLEIL 311 (389)
T ss_pred EEEecCChhhCCHH-------HcCCcc----------------------------------CceEEEECCCCHHHHHHHH
Confidence 99999999877777 677777 8889999999999999999
Q ss_pred HHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccccchhH
Q 000823 807 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESI 886 (1267)
Q Consensus 807 K~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~ 886 (1267)
+.++.+ +....+++....+..+.|++|+||..+|.++.+. |+. .....|+.++|
T Consensus 312 ~~~~~~----~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~-----------a~~-----------~~~~~i~~~d~ 365 (389)
T PRK03992 312 KIHTRK----MNLADDVDLEELAELTEGASGADLKAICTEAGMF-----------AIR-----------DDRTEVTMEDF 365 (389)
T ss_pred HHHhcc----CCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHH-----------HHH-----------cCCCCcCHHHH
Confidence 988765 4455667777778889999999999998862221 111 12345889999
Q ss_pred HHHHHHHHH
Q 000823 887 QYGIGIFQA 895 (1267)
Q Consensus 887 ~~al~~lq~ 895 (1267)
..|+..++.
T Consensus 366 ~~A~~~~~~ 374 (389)
T PRK03992 366 LKAIEKVMG 374 (389)
T ss_pred HHHHHHHhc
Confidence 998886553
No 64
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.5e-17 Score=190.41 Aligned_cols=245 Identities=21% Similarity=0.269 Sum_probs=180.5
Q ss_pred cccccccccccchhHHHHHHHHHhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEeccc
Q 000823 424 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 503 (1267)
Q Consensus 424 ~vsfd~FPYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~~D~~~ 503 (1267)
+|.|++||.- +..|..|.+++...+..++.. .+|.+.-+.|||-||+| -..+||+||+|-+.+|.|..+-.+.
T Consensus 149 ~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~F---~glr~p~rglLLfGPpg--tGKtmL~~aiAsE~~atff~iSass 221 (428)
T KOG0740|consen 149 NVGWDDIAGL--EDAKQSLKEAVILPLLRPDLF---LGLREPVRGLLLFGPPG--TGKTMLAKAIATESGATFFNISASS 221 (428)
T ss_pred cccccCCcch--hhHHHHhhhhhhhcccchHhh---hccccccchhheecCCC--CchHHHHHHHHhhhcceEeeccHHH
Confidence 5779999987 889999999999999888764 25778888999999999 7999999999999988765443322
Q ss_pred cCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 000823 504 LLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKNH 583 (1267)
Q Consensus 504 ~~~~~~~~e~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 583 (1267)
|+
T Consensus 222 Lt------------------------------------------------------------------------------ 223 (428)
T KOG0740|consen 222 LT------------------------------------------------------------------------------ 223 (428)
T ss_pred hh------------------------------------------------------------------------------
Confidence 22
Q ss_pred ccccCCeeEEeccCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceecccCCCCCCCCCCCCCCCCccccccccccc
Q 000823 584 MLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDLR 663 (1267)
Q Consensus 584 ~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgv~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~ 663 (1267)
T Consensus 224 -------------------------------------------------------------------------------- 223 (428)
T KOG0740|consen 224 -------------------------------------------------------------------------------- 223 (428)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcC----CcchhhHHHHHH--------hcCCCcEEEEeec
Q 000823 664 LENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG----NSDSYSTFKSRL--------EKLPDKVIVIGSH 731 (1267)
Q Consensus 664 ~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~g----~~~~~~~lk~~L--------~~l~g~VvvIGst 731 (1267)
+||+|| .+-+|.+||+|+.. .||.|+||||||.+|.. ..+..-.++..+ .+...+|+|||+|
T Consensus 224 -sK~~Ge--~eK~vralf~vAr~---~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaT 297 (428)
T KOG0740|consen 224 -SKYVGE--SEKLVRALFKVARS---LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGAT 297 (428)
T ss_pred -hhccCh--HHHHHHHHHHHHHh---cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecC
Confidence 345666 57799999999999 99999999999999972 222222222222 3335699999999
Q ss_pred ccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhh
Q 000823 732 THTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 811 (1267)
Q Consensus 732 ~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe 811 (1267)
|++.. +|+++-|||...++|++|+.++|..+|+..+.
T Consensus 298 N~P~e-------------------------------------------~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~ 334 (428)
T KOG0740|consen 298 NRPWE-------------------------------------------LDEAARRRFVKRLYIPLPDYETRSLLWKQLLK 334 (428)
T ss_pred CCchH-------------------------------------------HHHHHHHHhhceeeecCCCHHHHHHHHHHHHH
Confidence 99973 57778889999999999999999999999888
Q ss_pred hhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccccchhHHHHHH
Q 000823 812 RDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIG 891 (1267)
Q Consensus 812 ~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~ 891 (1267)
++ .......++..+. -.+-||++.||.++|.++++-+...+... ..+.. -..+...++...+|..++.
T Consensus 335 ~~-~~~l~~~d~~~l~--~~Tegysgsdi~~l~kea~~~p~r~~~~~--~~~~~-------~~~~~~r~i~~~df~~a~~ 402 (428)
T KOG0740|consen 335 EQ-PNGLSDLDISLLA--KVTEGYSGSDITALCKEAAMGPLRELGGT--TDLEF-------IDADKIRPITYPDFKNAFK 402 (428)
T ss_pred hC-CCCccHHHHHHHH--HHhcCcccccHHHHHHHhhcCchhhcccc--hhhhh-------cchhccCCCCcchHHHHHH
Confidence 75 2222223444444 45679999999999999887765554432 00000 1133455666677777666
Q ss_pred HHH
Q 000823 892 IFQ 894 (1267)
Q Consensus 892 ~lq 894 (1267)
.++
T Consensus 403 ~i~ 405 (428)
T KOG0740|consen 403 NIK 405 (428)
T ss_pred hhc
Confidence 443
No 65
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.3e-16 Score=190.44 Aligned_cols=247 Identities=38% Similarity=0.574 Sum_probs=213.7
Q ss_pred ccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEE
Q 000823 954 PLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVI 1033 (1267)
Q Consensus 954 pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsII 1033 (1267)
++..++.+...+ ..++.+++++||||+|||.+++++|.. +..+..++.+++.+++.|..+...+.+|..+....|+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 3 PLKEPELFKKLG-IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CccCHHHHHHhC-CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 455566666555 456689999999999999999999999 777788899999999999999999999999999999999
Q ss_pred EEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHH
Q 000823 1034 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRA 1111 (1267)
Q Consensus 1034 fIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~~~~Pd~eeR~ 1111 (1267)
++||++.+.+.+.. ........+..+++..++++. ... +++++.+|++..+++++++ ||+..+.+..|+...+.
T Consensus 81 ~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccc-cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 99999999988876 555667888999999999998 455 9999999999999999998 99999999999999999
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000823 1112 KILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDWLLVYLIVLQNLCVTAAHRPIKEILE 1191 (1267)
Q Consensus 1112 eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~ 1191 (1267)
+|+...........+.+...++..+.||+++|+. .+|..+...++++.+
T Consensus 157 ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------~l~~~~~~~~~~r~~- 205 (494)
T COG0464 157 EILQIHTRLMFLGPPGTGKTLAARTVGKSGADLG------------------------------ALAKEAALRELRRAI- 205 (494)
T ss_pred HHHHHHHhcCCCcccccHHHHHHhcCCccHHHHH------------------------------HHHHHHHHHHHHhhh-
Confidence 9999998887777788999999999999999999 899999888888743
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhcccccccccchhhhHHHHHhhCCCCCc
Q 000823 1192 KEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSR 1258 (1267)
Q Consensus 1192 ~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~~~~~~~v~W~di~G~~~~r 1258 (1267)
........++++||.++++++.|+ .+.....+.+.|.|++|.+..+
T Consensus 206 -------------------~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k 251 (494)
T COG0464 206 -------------------DLVGEYIGVTEDDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAK 251 (494)
T ss_pred -------------------ccCcccccccHHHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHH
Confidence 011233569999999999999998 6666678899999999976543
No 66
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.3e-15 Score=177.27 Aligned_cols=206 Identities=17% Similarity=0.300 Sum_probs=161.3
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhcc
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1011 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~ 1011 (1267)
.+|+.++.-.++|+.|.+-+....+..+.|.+.|. ...+|.|||||||||||+++.|+|+.+++.++.+..++....
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGk-awKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGK-AWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCc-chhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 78999999999999999999988899999988763 334799999999999999999999999999999988775332
Q ss_pred CccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCch-----H-HHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC
Q 000823 1012 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE-----H-EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1267)
Q Consensus 1012 Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~-----~-~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1267)
.. ++.++..+. ..+||+|.|||.-+.-+..... + ....-.+..||..+||+....+.--|||.|||.+
T Consensus 275 ---~d-Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 275 ---SD-LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred ---HH-HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 22 666655432 3589999999987643322111 1 1123457789999999998877778899999999
Q ss_pred CCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCC--CHHHHHHHH
Q 000823 1086 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGY--SGSDLKVIF 1148 (1267)
Q Consensus 1086 ~~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGy--Sg~DL~~Lv 1148 (1267)
+.|||||+| |.|..|++..-+.++-+.++..++.-.. +..-+.+|.+..++- |++|+...+
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 999999999 9999999999999999999999986532 122345555555443 899998433
No 67
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.65 E-value=3.5e-16 Score=169.51 Aligned_cols=191 Identities=23% Similarity=0.306 Sum_probs=121.0
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhcc
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1011 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~ 1011 (1267)
.+|+|++|+++++..++-++.....+ ..+..++|||||||+|||+||+.||++++.+|..++.+.+..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 47999999999999988776532111 234569999999999999999999999999999888754321
Q ss_pred CccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh-hccCCccc------CCCcEEEEEecCC
Q 000823 1012 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV-NWDGLRTK------DTERILVLAATNR 1084 (1267)
Q Consensus 1012 Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~-~ldgl~~~------~~~~VlVIaTTN~ 1084 (1267)
..-+..++.... ...|||||||++| +...++.+...++.+.. .+-|.... +-.++-+|++|++
T Consensus 89 ---~~dl~~il~~l~--~~~ILFIDEIHRl-----nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr 158 (233)
T PF05496_consen 89 ---AGDLAAILTNLK--EGDILFIDEIHRL-----NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTR 158 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC-------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESS
T ss_pred ---HHHHHHHHHhcC--CCcEEEEechhhc-----cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecc
Confidence 122333333322 3579999999988 33334444333333321 12121110 1146889999999
Q ss_pred CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHHHHH
Q 000823 1085 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLK 1145 (1267)
Q Consensus 1085 p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~DL~ 1145 (1267)
...|...++.||..+..+..++.++..+|++......++. .+....+||+++.| +++---
T Consensus 159 ~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAn 219 (233)
T PF05496_consen 159 AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIAN 219 (233)
T ss_dssp GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHH
T ss_pred ccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHH
Confidence 9999999999998888999999999999999887777665 34457889999998 555443
No 68
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.65 E-value=6.5e-16 Score=184.01 Aligned_cols=151 Identities=15% Similarity=0.266 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC--------cchhhHHHHHHhcC-----CCcEEEEeecccCCCcccc
Q 000823 674 KLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLEKL-----PDKVIVIGSHTHTDNRKEK 740 (1267)
Q Consensus 674 k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~g~--------~~~~~~lk~~L~~l-----~g~VvvIGst~~~d~~~~~ 740 (1267)
...+..+|+.+.. ..|+||||||||.++..+ .+....+...|..+ .++|.||++||+.+..|++
T Consensus 262 ~~~vr~lF~~A~~---~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpa 338 (438)
T PTZ00361 262 PKLVRELFRVAEE---NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPA 338 (438)
T ss_pred HHHHHHHHHHHHh---CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHH
Confidence 3467888888877 899999999999987522 22333344444333 4589999999999877777
Q ss_pred CCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhc
Q 000823 741 SHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMK 820 (1267)
Q Consensus 741 ~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~ 820 (1267)
|.|||| |+++|+|++|+.++|.+||+.++.+ +...
T Consensus 339 -------LlRpGR----------------------------------fd~~I~~~~Pd~~~R~~Il~~~~~k----~~l~ 373 (438)
T PTZ00361 339 -------LIRPGR----------------------------------IDRKIEFPNPDEKTKRRIFEIHTSK----MTLA 373 (438)
T ss_pred -------hccCCe----------------------------------eEEEEEeCCCCHHHHHHHHHHHHhc----CCCC
Confidence 677777 8889999999999999999988876 4556
Q ss_pred cCchhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccccchhHHHHHHHHH
Q 000823 821 GNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQ 894 (1267)
Q Consensus 821 ~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~~lq 894 (1267)
.+++....+..+.+++|+||..+|.++..+ |.. .....|+.++|..|+..+.
T Consensus 374 ~dvdl~~la~~t~g~sgAdI~~i~~eA~~~-----------Alr-----------~~r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 374 EDVDLEEFIMAKDELSGADIKAICTEAGLL-----------ALR-----------ERRMKVTQADFRKAKEKVL 425 (438)
T ss_pred cCcCHHHHHHhcCCCCHHHHHHHHHHHHHH-----------HHH-----------hcCCccCHHHHHHHHHHHH
Confidence 677777778888999999999988862221 221 1245689999999888653
No 69
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.65 E-value=1.8e-15 Score=173.35 Aligned_cols=182 Identities=24% Similarity=0.429 Sum_probs=132.7
Q ss_pred ccchhccccHHHH---HHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch
Q 000823 932 VTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1267)
Q Consensus 932 vt~~DI~Gle~vk---~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s 1008 (1267)
.+++|++|++++. .-|+++|.. ....+++||||||||||+||+.||...+.+|..+++..
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~--------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEA--------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhc--------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 4788999998876 345555541 23468999999999999999999999999999998743
Q ss_pred hccCccHHHHHHHHHHHHhcC----CeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEec--
Q 000823 1009 KWFGEGEKYVKAVFSLASKIA----PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT-- 1082 (1267)
Q Consensus 1009 ~~~Ge~e~~v~~lF~~A~k~~----PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTT-- 1082 (1267)
..-+-++.+++.|++.. ..|||||||+++ +..++. .|+-.+ +++.|++|++|
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----nK~QQD-------~lLp~v------E~G~iilIGATTE 141 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----NKAQQD-------ALLPHV------ENGTIILIGATTE 141 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----Chhhhh-------hhhhhh------cCCeEEEEeccCC
Confidence 34567889999996554 379999999977 222222 232222 34667777766
Q ss_pred CCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh--CCCC------CcccHHHHHHHcCCCCHHHHHHHHhhhhhH
Q 000823 1083 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK--EDLS------PDVDFDAIANMTDGYSGSDLKVIFLSHSLI 1154 (1267)
Q Consensus 1083 N~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k--~~l~------~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~ 1154 (1267)
|....+.+++++|. +++.+...+.++..++++..+.. .++. ++.-++.|+..++| |.+.+++..+++
T Consensus 142 NPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~LE~~ 216 (436)
T COG2256 142 NPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNLLELA 216 (436)
T ss_pred CCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHHHHHH
Confidence 55689999999999 89999999999999999984433 2333 22335667777766 666666666665
Q ss_pred HHH
Q 000823 1155 CNV 1157 (1267)
Q Consensus 1155 ~~v 1157 (1267)
...
T Consensus 217 ~~~ 219 (436)
T COG2256 217 ALS 219 (436)
T ss_pred HHh
Confidence 544
No 70
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5.8e-16 Score=166.73 Aligned_cols=151 Identities=19% Similarity=0.280 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHhhhccCCCeEEEEcchhhhhc--------CCcchhhHHHHHHhcCCC-----cEEEEeecccCCCcccc
Q 000823 674 KLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFKSRLEKLPD-----KVIVIGSHTHTDNRKEK 740 (1267)
Q Consensus 674 k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~--------g~~~~~~~lk~~L~~l~g-----~VvvIGst~~~d~~~~~ 740 (1267)
-+.++.||=.+.+ +.|.|||+||||.+=. |..+.-......|.+|+| ||-||=+||+.|--|++
T Consensus 226 srmvrelfvmare---hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~a 302 (404)
T KOG0728|consen 226 SRMVRELFVMARE---HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPA 302 (404)
T ss_pred HHHHHHHHHHHHh---cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHh
Confidence 3589999999999 9999999999998432 233444444444556655 99999999999988888
Q ss_pred CCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhc
Q 000823 741 SHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMK 820 (1267)
Q Consensus 741 ~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~ 820 (1267)
|-|||| .+++|+|++|++++|++||++|-.+| .+-
T Consensus 303 -------llrpgr----------------------------------idrkiefp~p~e~ar~~ilkihsrkm----nl~ 337 (404)
T KOG0728|consen 303 -------LLRPGR----------------------------------IDRKIEFPPPNEEARLDILKIHSRKM----NLT 337 (404)
T ss_pred -------hcCCCc----------------------------------ccccccCCCCCHHHHHHHHHHhhhhh----chh
Confidence 889999 56899999999999999999997763 233
Q ss_pred cCchhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccccchhHHHHHHHHH
Q 000823 821 GNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQ 894 (1267)
Q Consensus 821 ~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~~lq 894 (1267)
..++.-..+-.-+|-+||++.++|+++-++ |+ ++.++.++.+||+.|...+.
T Consensus 338 rgi~l~kiaekm~gasgaevk~vcteagm~-----------al-----------rerrvhvtqedfemav~kvm 389 (404)
T KOG0728|consen 338 RGINLRKIAEKMPGASGAEVKGVCTEAGMY-----------AL-----------RERRVHVTQEDFEMAVAKVM 389 (404)
T ss_pred cccCHHHHHHhCCCCccchhhhhhhhhhHH-----------HH-----------HHhhccccHHHHHHHHHHHH
Confidence 344444445566899999999999984332 21 34577889999999888553
No 71
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.64 E-value=3.9e-15 Score=188.86 Aligned_cols=185 Identities=23% Similarity=0.391 Sum_probs=137.3
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEEee
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1002 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el----------g~~fi~I~ 1002 (1267)
++++++|.++..+.+.+.+.. +...++||+||||||||++|+++|+.+ +..++.++
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 567889999888877766542 123589999999999999999999987 77899999
Q ss_pred ccccc--hhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEE
Q 000823 1003 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1080 (1267)
Q Consensus 1003 ~seL~--s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIa 1080 (1267)
+..+. .++.|+.+..++.+|+.+.+..+.||||||||.|++.....+.......++.. .+ .++.+.+|+
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~---~l------~~g~i~~Ig 316 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKP---AL------SSGKLRCIG 316 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHH---HH------hCCCeEEEE
Confidence 98887 47889999999999999988889999999999998754322221111122222 22 245789999
Q ss_pred ecCCC-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCC----CC-CcccHHHHHHHcCCCCH
Q 000823 1081 ATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKED----LS-PDVDFDAIANMTDGYSG 1141 (1267)
Q Consensus 1081 TTN~p-----~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~----l~-~dvdl~~LA~~TeGySg 1141 (1267)
+||.. ...|+++.|||. .|.|+.|+.+++.+||+.+..... +. .+..+..++..+..|-+
T Consensus 317 aTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred ecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 99863 467999999995 799999999999999998776521 11 23334555555554433
No 72
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.63 E-value=2.2e-14 Score=166.03 Aligned_cols=191 Identities=21% Similarity=0.239 Sum_probs=133.2
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhcc
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1011 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~ 1011 (1267)
.+|++++|.++.++.|...+..... . ..++.++||+||||+|||++|+++|++++..+..++.+.+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~--------~-~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK--------R-GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh--------c-CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 4799999999999999888753111 1 23457899999999999999999999999988776654331
Q ss_pred CccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh--hccCCccc-----CCCcEEEEEecCC
Q 000823 1012 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV--NWDGLRTK-----DTERILVLAATNR 1084 (1267)
Q Consensus 1012 Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~--~ldgl~~~-----~~~~VlVIaTTN~ 1084 (1267)
....+..++... ..++||||||||.+.. ...+....+++.... .++..... .-.++.+|++|++
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~~-----~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLSP-----VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcch-----HHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 122334444433 2468999999998831 122222233322210 11111000 0134788999999
Q ss_pred CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHHHHH
Q 000823 1085 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLK 1145 (1267)
Q Consensus 1085 p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~DL~ 1145 (1267)
+..+++.+++||..++.|+.|+.+++.+|++..+...++. ++..+..|++.+.|+- +.+.
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~ 220 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIAN 220 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHH
Confidence 9999999999998899999999999999999998887665 3344788999998844 4444
No 73
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.63 E-value=1.4e-15 Score=197.55 Aligned_cols=158 Identities=11% Similarity=0.130 Sum_probs=113.3
Q ss_pred CcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCcc--hhhHHHHHHhcC-----CCcEEEEeecccCCCcccc
Q 000823 668 GTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNSD--SYSTFKSRLEKL-----PDKVIVIGSHTHTDNRKEK 740 (1267)
Q Consensus 668 ~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~g~~~--~~~~lk~~L~~l-----~g~VvvIGst~~~d~~~~~ 740 (1267)
+++.....-|+.+|+.+.. ..|+||||||||.+-....+ ..+.|...|+.. ..+|+||||||++|..|||
T Consensus 1712 m~~~e~~~rIr~lFelARk---~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPA 1788 (2281)
T CHL00206 1712 MMPKIDRFYITLQFELAKA---MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPA 1788 (2281)
T ss_pred hhhhhhHHHHHHHHHHHHH---CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHh
Confidence 3442233458999999999 99999999999995543221 245555556422 3579999999999999999
Q ss_pred CCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhc
Q 000823 741 SHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMK 820 (1267)
Q Consensus 741 ~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~ 820 (1267)
|.|||| |+++|+|++|+..+|.+++..++.. +.+.+.
T Consensus 1789 -------LLRPGR----------------------------------FDR~I~Ir~Pd~p~R~kiL~ILl~t--kg~~L~ 1825 (2281)
T CHL00206 1789 -------LIAPNK----------------------------------LNTCIKIRRLLIPQQRKHFFTLSYT--RGFHLE 1825 (2281)
T ss_pred -------HcCCCC----------------------------------CCeEEEeCCCCchhHHHHHHHHHhh--cCCCCC
Confidence 999999 8899999999999999998865311 112333
Q ss_pred cC-chhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccccchhHHHHHHHH
Q 000823 821 GN-LNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIF 893 (1267)
Q Consensus 821 ~N-v~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~~l 893 (1267)
.+ ++....+-.+.|++||||.++|.++++. |+ ...+..|+.+++..|+...
T Consensus 1826 ~~~vdl~~LA~~T~GfSGADLanLvNEAali-----------Ai-----------rq~ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1826 KKMFHTNGFGSITMGSNARDLVALTNEALSI-----------SI-----------TQKKSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred cccccHHHHHHhCCCCCHHHHHHHHHHHHHH-----------HH-----------HcCCCccCHHHHHHHHHHH
Confidence 22 3455667788999999999988873322 11 1135567888888877743
No 74
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.63 E-value=1.2e-15 Score=185.64 Aligned_cols=237 Identities=19% Similarity=0.287 Sum_probs=167.5
Q ss_pred cCCccccccccccccccchhHHHHHHHHHhhcccCCcc-cccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeE
Q 000823 418 LDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDH-AKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKL 496 (1267)
Q Consensus 418 ~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hL~~~~~-~~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~L 496 (1267)
...+..+++|+++.-+ ++.|..|.+.+.. |++++. .+++ ...++.|||+|||| ..+.+||||||++.++++
T Consensus 45 ~~~~~~~~~~~di~g~--~~~k~~l~~~~~~-l~~~~~~~~~g---~~~~~giLL~GppG--tGKT~la~alA~~~~~~~ 116 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGI--DEAKEELMEIVDF-LKNPSKFTKLG---AKIPKGVLLVGPPG--TGKTLLAKAVAGEAGVPF 116 (495)
T ss_pred ccCCCCCCCHHHhCCH--HHHHHHHHHHHHH-HHCHHHHHhcC---CCCCCcEEEECCCC--CCHHHHHHHHHHHcCCCe
Confidence 3455789999998866 9999988887664 777653 3444 24457899999999 899999999999998887
Q ss_pred EEEeccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 000823 497 LIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTS 576 (1267)
Q Consensus 497 L~~D~~~~~~~~~~~e~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 576 (1267)
+.++.+.|..
T Consensus 117 ~~i~~~~~~~---------------------------------------------------------------------- 126 (495)
T TIGR01241 117 FSISGSDFVE---------------------------------------------------------------------- 126 (495)
T ss_pred eeccHHHHHH----------------------------------------------------------------------
Confidence 6665433211
Q ss_pred cccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceecccCCCCCCCCCCCCCCCCcccc
Q 000823 577 AGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFF 656 (1267)
Q Consensus 577 ~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgv~Fd~~~~~~~~l~~~c~~~~~ff 656 (1267)
.|+|
T Consensus 127 ---------------~~~g------------------------------------------------------------- 130 (495)
T TIGR01241 127 ---------------MFVG------------------------------------------------------------- 130 (495)
T ss_pred ---------------HHhc-------------------------------------------------------------
Confidence 0111
Q ss_pred cccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCc--------c---hhhHHHHHHhcC--CC
Q 000823 657 CNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--------D---SYSTFKSRLEKL--PD 723 (1267)
Q Consensus 657 ~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~g~~--------~---~~~~lk~~L~~l--~g 723 (1267)
+ ....++.+|+.+.. ..|.||||||||.+..... + ..+.|...|+.+ .+
T Consensus 131 -------------~--~~~~l~~~f~~a~~---~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 131 -------------V--GASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred -------------c--cHHHHHHHHHHHHh---cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 1 11256677877776 8899999999999765211 1 122222222322 35
Q ss_pred cEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHH
Q 000823 724 KVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALL 803 (1267)
Q Consensus 724 ~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl 803 (1267)
+|+|||+||+++..|++ |+|||| |+.+|+|++|+.++|.
T Consensus 193 ~v~vI~aTn~~~~ld~a-------l~r~gR----------------------------------fd~~i~i~~Pd~~~R~ 231 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPA-------LLRPGR----------------------------------FDRQVVVDLPDIKGRE 231 (495)
T ss_pred CeEEEEecCChhhcCHH-------HhcCCc----------------------------------ceEEEEcCCCCHHHHH
Confidence 79999999999988888 788888 8889999999999999
Q ss_pred HHHHHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccccc
Q 000823 804 ASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSC 883 (1267)
Q Consensus 804 ~IwK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ 883 (1267)
+||+.++.. .....+++....+..+.|++|+||+.+|.++.. .|+. ..+..|+.
T Consensus 232 ~il~~~l~~----~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~-----------~a~~-----------~~~~~i~~ 285 (495)
T TIGR01241 232 EILKVHAKN----KKLAPDVDLKAVARRTPGFSGADLANLLNEAAL-----------LAAR-----------KNKTEITM 285 (495)
T ss_pred HHHHHHHhc----CCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHH-----------HHHH-----------cCCCCCCH
Confidence 999988765 333345666677778899999999988775211 1111 12346788
Q ss_pred hhHHHHHHHH
Q 000823 884 ESIQYGIGIF 893 (1267)
Q Consensus 884 ed~~~al~~l 893 (1267)
++|..++...
T Consensus 286 ~~l~~a~~~~ 295 (495)
T TIGR01241 286 NDIEEAIDRV 295 (495)
T ss_pred HHHHHHHHHH
Confidence 8888877643
No 75
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.62 E-value=1.8e-14 Score=164.25 Aligned_cols=186 Identities=21% Similarity=0.259 Sum_probs=127.5
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhccC
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 1012 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~G 1012 (1267)
+|+|++|++++++.|..++..... . ..++.+++|+||||||||+||+++|++++..+..+..+.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~-~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~---- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------R-QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK---- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------c-CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC----
Confidence 689999999999999888753211 1 233468999999999999999999999998877665543211
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhh--ccCCcc-----cCCCcEEEEEecCCC
Q 000823 1013 EGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRT-----KDTERILVLAATNRP 1085 (1267)
Q Consensus 1013 e~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~--ldgl~~-----~~~~~VlVIaTTN~p 1085 (1267)
...+...+... ..+.|||||||+.+.. ...+.+..+++..-.. ++.... ....++.+|++||++
T Consensus 69 --~~~l~~~l~~~--~~~~vl~iDEi~~l~~-----~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 69 --PGDLAAILTNL--EEGDVLFIDEIHRLSP-----AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred --chhHHHHHHhc--ccCCEEEEehHhhhCH-----HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 11222222222 2467999999998842 1222222232222111 111000 011347889999999
Q ss_pred CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCC
Q 000823 1086 FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 1140 (1267)
Q Consensus 1086 ~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGyS 1140 (1267)
..+++++++||...+.|+.|+.+++.++++..+...++. ++..++.|++.+.|+.
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p 195 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP 195 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc
Confidence 999999999998889999999999999999998876554 3344678889888854
No 76
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.61 E-value=1.1e-14 Score=185.68 Aligned_cols=171 Identities=20% Similarity=0.335 Sum_probs=123.6
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccc--------
Q 000823 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 1007 (1267)
Q Consensus 936 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~-------- 1007 (1267)
++.|++++++.+.+++...... ... ....+||+||||||||++|++||+.++.+|+.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~~--~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GKM--KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cCC--CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 5789999999999877643211 111 223799999999999999999999999999999775431
Q ss_pred -hhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHh-----hhhhccCCcccCCCcEEEEEe
Q 000823 1008 -SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDTERILVLAA 1081 (1267)
Q Consensus 1008 -s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~e-----LL~~ldgl~~~~~~~VlVIaT 1081 (1267)
..|.|...+.+.+.|..+....| ||||||||.+...... ....++..++.. |+....+.. -+-.++++|+|
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-~~~~aLl~~ld~~~~~~f~d~~~~~~-~d~s~v~~I~T 469 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-DPASALLEVLDPEQNNAFSDHYLDVP-FDLSKVIFIAT 469 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-CHHHHHHHhcCHHhcCccccccCCce-eccCCEEEEEe
Confidence 35677778888888888876665 8999999999743221 111222222211 111110111 12357999999
Q ss_pred cCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHH
Q 000823 1082 TNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVIL 1118 (1267)
Q Consensus 1082 TN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll 1118 (1267)
||..+.+++++++|| .+|.|+.|+.+++.+|++.++
T Consensus 470 tN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 470 ANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred cCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHH
Confidence 999999999999999 589999999999999998876
No 77
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.61 E-value=5.3e-15 Score=160.53 Aligned_cols=148 Identities=16% Similarity=0.287 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc---------CCcchhhHHHHHHhcC--CCcEEEEeecccCCCccccC
Q 000823 673 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIA---------GNSDSYSTFKSRLEKL--PDKVIVIGSHTHTDNRKEKS 741 (1267)
Q Consensus 673 ~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~---------g~~~~~~~lk~~L~~l--~g~VvvIGst~~~d~~~~~~ 741 (1267)
.-+.|..||+-+.+ ..|+|+||||+|.+-. .-.+..|.|...|+.+ ...|+-|||||+++
T Consensus 195 gar~Ihely~rA~~---~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~------ 265 (368)
T COG1223 195 GARRIHELYERARK---AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPE------ 265 (368)
T ss_pred HHHHHHHHHHHHHh---cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChh------
Confidence 44589999999998 9999999999998653 2234445554444433 34899999999997
Q ss_pred CCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhcc
Q 000823 742 HPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKG 821 (1267)
Q Consensus 742 ~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~ 821 (1267)
| .|.++-.||+.+|+|.||++|+|+.|+....++ +.+..
T Consensus 266 ----------------~---------------------LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~----~Plpv 304 (368)
T COG1223 266 ----------------L---------------------LDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK----FPLPV 304 (368)
T ss_pred ----------------h---------------------cCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh----CCCcc
Confidence 2 356778889999999999999999999966655 55555
Q ss_pred CchhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccccchhHHHHHH
Q 000823 822 NLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIG 891 (1267)
Q Consensus 822 Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~ 891 (1267)
....-..+..+.|++|-||. +++...|+.+++. +.+-.|..++++.++.
T Consensus 305 ~~~~~~~~~~t~g~SgRdik--------------ekvlK~aLh~Ai~-------ed~e~v~~edie~al~ 353 (368)
T COG1223 305 DADLRYLAAKTKGMSGRDIK--------------EKVLKTALHRAIA-------EDREKVEREDIEKALK 353 (368)
T ss_pred ccCHHHHHHHhCCCCchhHH--------------HHHHHHHHHHHHH-------hchhhhhHHHHHHHHH
Confidence 55555666788999999884 4455566655543 3455677788887776
No 78
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.5e-15 Score=183.61 Aligned_cols=237 Identities=20% Similarity=0.328 Sum_probs=176.7
Q ss_pred ccCCccccccccccccccchhHHHHHHHHHhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeE
Q 000823 417 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKL 496 (1267)
Q Consensus 417 i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~L 496 (1267)
+-+-.++.|+|++|=-- |..|..|.+-+- .||+++. |.+-=.-.++.+||+|||| +.++.||||.|-+-|+++
T Consensus 300 ~~~~~~t~V~FkDVAG~--deAK~El~E~V~-fLKNP~~--Y~~lGAKiPkGvLL~GPPG--TGKTLLAKAiAGEAgVPF 372 (774)
T KOG0731|consen 300 FKNEGNTGVKFKDVAGV--DEAKEELMEFVK-FLKNPEQ--YQELGAKIPKGVLLVGPPG--TGKTLLAKAIAGEAGVPF 372 (774)
T ss_pred eccCCCCCCccccccCc--HHHHHHHHHHHH-HhcCHHH--HHHcCCcCcCceEEECCCC--CcHHHHHHHHhcccCCce
Confidence 33467888999996554 999999999876 6888753 3322234678999999999 899999999999999999
Q ss_pred EEEeccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 000823 497 LIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTS 576 (1267)
Q Consensus 497 L~~D~~~~~~~~~~~e~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 576 (1267)
+-+-.+.|.-
T Consensus 373 ~svSGSEFvE---------------------------------------------------------------------- 382 (774)
T KOG0731|consen 373 FSVSGSEFVE---------------------------------------------------------------------- 382 (774)
T ss_pred eeechHHHHH----------------------------------------------------------------------
Confidence 8664433321
Q ss_pred cccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceecccCCCCCCCCCCCCCCCCcccc
Q 000823 577 AGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFF 656 (1267)
Q Consensus 577 ~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgv~Fd~~~~~~~~l~~~c~~~~~ff 656 (1267)
.|+|.
T Consensus 383 ---------------~~~g~------------------------------------------------------------ 387 (774)
T KOG0731|consen 383 ---------------MFVGV------------------------------------------------------------ 387 (774)
T ss_pred ---------------Hhccc------------------------------------------------------------
Confidence 11110
Q ss_pred cccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc---------CCcchhhHHHHHHhcC-----C
Q 000823 657 CNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA---------GNSDSYSTFKSRLEKL-----P 722 (1267)
Q Consensus 657 ~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~---------g~~~~~~~lk~~L~~l-----~ 722 (1267)
+ --.++.||..+.. .-|+|+||||||.+-. ++.+.-+.|--.|-.+ .
T Consensus 388 ---~-------------asrvr~lf~~ar~---~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 388 ---G-------------ASRVRDLFPLARK---NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ---c-------------hHHHHHHHHHhhc---cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 0 0167889999998 9999999999997432 3344444443333222 3
Q ss_pred CcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHH
Q 000823 723 DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEAL 802 (1267)
Q Consensus 723 g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~R 802 (1267)
+.||||++||++|-.|++ |+|||| |+++|.|.+|+..+|
T Consensus 449 ~~vi~~a~tnr~d~ld~a-------llrpGR----------------------------------fdr~i~i~~p~~~~r 487 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPA-------LLRPGR----------------------------------FDRQIQIDLPDVKGR 487 (774)
T ss_pred CcEEEEeccCCccccCHH-------hcCCCc----------------------------------cccceeccCCchhhh
Confidence 589999999999989999 999999 889999999999999
Q ss_pred HHHHHHhhhhhhhhhhh-ccCchhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccc
Q 000823 803 LASWKHQLDRDSETLKM-KGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVL 881 (1267)
Q Consensus 803 l~IwK~qLe~~~e~l~~-~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~I 881 (1267)
.+|++.|+.+ ..+ .+.+++...+..+.|+.||||..+|-+++.+ |+ +.....|
T Consensus 488 ~~i~~~h~~~----~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~-----------a~-----------r~~~~~i 541 (774)
T KOG0731|consen 488 ASILKVHLRK----KKLDDEDVDLSKLASLTPGFSGADLANLCNEAALL-----------AA-----------RKGLREI 541 (774)
T ss_pred HHHHHHHhhc----cCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHH-----------HH-----------HhccCcc
Confidence 9999999877 444 3566677778888999999999998873332 11 1234457
Q ss_pred cchhHHHHHH
Q 000823 882 SCESIQYGIG 891 (1267)
Q Consensus 882 s~ed~~~al~ 891 (1267)
...+|+++++
T Consensus 542 ~~~~~~~a~~ 551 (774)
T KOG0731|consen 542 GTKDLEYAIE 551 (774)
T ss_pred chhhHHHHHH
Confidence 7788888877
No 79
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.9e-15 Score=163.05 Aligned_cols=235 Identities=16% Similarity=0.265 Sum_probs=176.6
Q ss_pred CccccccccccccccchhHHHHHHHHHhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEE
Q 000823 420 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 499 (1267)
Q Consensus 420 ~~~~~vsfd~FPYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~~ 499 (1267)
-++-+||+.+..-. +-.|+...+|+-.+|.|.++-+..- -..++.+||+|||| +.+.|||||.||+--|.++-+
T Consensus 147 ~ekpdvsy~diggl--d~qkqeireavelplt~~~ly~qig--idpprgvllygppg--~gktml~kava~~t~a~firv 220 (408)
T KOG0727|consen 147 DEKPDVSYADIGGL--DVQKQEIREAVELPLTHADLYKQIG--IDPPRGVLLYGPPG--TGKTMLAKAVANHTTAAFIRV 220 (408)
T ss_pred CCCCCccccccccc--hhhHHHHHHHHhccchHHHHHHHhC--CCCCcceEEeCCCC--CcHHHHHHHHhhccchheeee
Confidence 45556777764333 8889999999999999999875432 23567899999999 999999999999999888755
Q ss_pred eccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 000823 500 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 579 (1267)
Q Consensus 500 D~~~~~~~~~~~e~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (1267)
-.+.|--
T Consensus 221 vgsefvq------------------------------------------------------------------------- 227 (408)
T KOG0727|consen 221 VGSEFVQ------------------------------------------------------------------------- 227 (408)
T ss_pred ccHHHHH-------------------------------------------------------------------------
Confidence 4322210
Q ss_pred ccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceecccCCCCCCCCCCCCCCCCccccccc
Q 000823 580 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 659 (1267)
Q Consensus 580 s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgv~Fd~~~~~~~~l~~~c~~~~~ff~~~ 659 (1267)
||.| .
T Consensus 228 ------------kylg----------e----------------------------------------------------- 232 (408)
T KOG0727|consen 228 ------------KYLG----------E----------------------------------------------------- 232 (408)
T ss_pred ------------HHhc----------c-----------------------------------------------------
Confidence 4555 1
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC----c----chhhHHHHHHhcCCC-----cEE
Q 000823 660 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----S----DSYSTFKSRLEKLPD-----KVI 726 (1267)
Q Consensus 660 ~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~g~----~----~~~~~lk~~L~~l~g-----~Vv 726 (1267)
.-+.++-+|.++.+ +.|.|||||||+.+...+ . +.-..|-..|.+.+| ||-
T Consensus 233 -------------gprmvrdvfrlake---napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvk 296 (408)
T KOG0727|consen 233 -------------GPRMVRDVFRLAKE---NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVK 296 (408)
T ss_pred -------------CcHHHHHHHHHHhc---cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceE
Confidence 12378888999998 999999999999977522 2 223334444455544 999
Q ss_pred EEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHH
Q 000823 727 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 806 (1267)
Q Consensus 727 vIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~Iw 806 (1267)
||=+||+.|..||+ |-|||| ++++|+|++||..++.-++
T Consensus 297 vimatnradtldpa-------llrpgr----------------------------------ldrkiefplpdrrqkrlvf 335 (408)
T KOG0727|consen 297 VIMATNRADTLDPA-------LLRPGR----------------------------------LDRKIEFPLPDRRQKRLVF 335 (408)
T ss_pred EEEecCcccccCHh-------hcCCcc----------------------------------ccccccCCCCchhhhhhhH
Confidence 99999999999999 899999 6689999999999999999
Q ss_pred HHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccccchhH
Q 000823 807 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESI 886 (1267)
Q Consensus 807 K~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~ 886 (1267)
...+.+ ..+...++....+.+--.++|||+.++|-++-++ + + +..+..+...||
T Consensus 336 ~titsk----m~ls~~vdle~~v~rpdkis~adi~aicqeagm~-------a----v-----------r~nryvvl~kd~ 389 (408)
T KOG0727|consen 336 STITSK----MNLSDEVDLEDLVARPDKISGADINAICQEAGML-------A----V-----------RENRYVVLQKDF 389 (408)
T ss_pred Hhhhhc----ccCCcccCHHHHhcCccccchhhHHHHHHHHhHH-------H----H-----------HhcceeeeHHHH
Confidence 988777 5566777777777777889999998888763221 1 1 234667778888
Q ss_pred HHHHH
Q 000823 887 QYGIG 891 (1267)
Q Consensus 887 ~~al~ 891 (1267)
+.+..
T Consensus 390 e~ay~ 394 (408)
T KOG0727|consen 390 EKAYK 394 (408)
T ss_pred HHHHH
Confidence 87765
No 80
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.58 E-value=1e-13 Score=159.32 Aligned_cols=102 Identities=12% Similarity=0.075 Sum_probs=77.5
Q ss_pred CCCcchhHHHHHHHHHHHHhhhc--cCCCeEEEEcchhhhhcCCc----chh-----hHHHHHHhc--------------
Q 000823 666 NSGTEDLDKLLINTLFEVVFSES--RSCPFILFMKDAEKSIAGNS----DSY-----STFKSRLEK-------------- 720 (1267)
Q Consensus 666 ~~~~e~~~k~~i~~L~ev~~~~~--~~~p~ILfi~di~~~l~g~~----~~~-----~~lk~~L~~-------------- 720 (1267)
+|+|| .+..|+.+|+.+...+ +.+|+||||||||.++++.. ..- ..|-..++.
T Consensus 187 k~vGE--sEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~ 264 (413)
T PLN00020 187 ENAGE--PGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKE 264 (413)
T ss_pred CcCCc--HHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccc
Confidence 45666 7889999999998764 67899999999999776321 111 122222221
Q ss_pred CCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHH
Q 000823 721 LPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDE 800 (1267)
Q Consensus 721 l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE 800 (1267)
-..+|+||++||+++..+++ |+|||| |+.. |.+|+.+
T Consensus 265 ~~~~V~VIaTTNrpd~LDpA-------LlRpGR----------------------------------fDk~--i~lPd~e 301 (413)
T PLN00020 265 EIPRVPIIVTGNDFSTLYAP-------LIRDGR----------------------------------MEKF--YWAPTRE 301 (413)
T ss_pred cCCCceEEEeCCCcccCCHh-------HcCCCC----------------------------------CCce--eCCCCHH
Confidence 24579999999999989999 999999 6554 4589999
Q ss_pred HHHHHHHHhhhh
Q 000823 801 ALLASWKHQLDR 812 (1267)
Q Consensus 801 ~Rl~IwK~qLe~ 812 (1267)
+|..||+.++.+
T Consensus 302 ~R~eIL~~~~r~ 313 (413)
T PLN00020 302 DRIGVVHGIFRD 313 (413)
T ss_pred HHHHHHHHHhcc
Confidence 999999988776
No 81
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.4e-14 Score=171.83 Aligned_cols=172 Identities=23% Similarity=0.336 Sum_probs=130.6
Q ss_pred hhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeecc------ccc-
Q 000823 935 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS------SIT- 1007 (1267)
Q Consensus 935 ~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~s------eL~- 1007 (1267)
.|-.|++++|+++.+++.-+... ....- .-++|+||||+|||+|++.||+.++..|++++.. ++.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~------~~~kG--pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRG 394 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT------KKLKG--PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRG 394 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh------ccCCC--cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcc
Confidence 36789999999999998642221 11111 2588999999999999999999999999999874 333
Q ss_pred --hhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHH-----hhhhhccCCcccCCCcEEEEE
Q 000823 1008 --SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDTERILVLA 1080 (1267)
Q Consensus 1008 --s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~-----eLL~~ldgl~~~~~~~VlVIa 1080 (1267)
..|+|..++.+-+-+..|....| |++|||||.|... ....-..++-.++. .|..+.-.++. +-.+|++|+
T Consensus 395 HRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~y-DLS~VmFia 471 (782)
T COG0466 395 HRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVPY-DLSKVMFIA 471 (782)
T ss_pred ccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCcc-chhheEEEe
Confidence 34899999999999999988887 8899999999643 22222334333331 22222222222 236899999
Q ss_pred ecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHH
Q 000823 1081 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVIL 1118 (1267)
Q Consensus 1081 TTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll 1118 (1267)
|+|..+.++..|+.|. .+|.+.-++.++..+|.+.++
T Consensus 472 TANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 472 TANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred ecCccccCChHHhcce-eeeeecCCChHHHHHHHHHhc
Confidence 9999999999999999 899999999999999999887
No 82
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.58 E-value=2.2e-14 Score=173.30 Aligned_cols=131 Identities=21% Similarity=0.257 Sum_probs=92.9
Q ss_pred ccCCCcchhHHHHHHHHHHHHhhhc-cCCCeEEEEcchhhhhcC-----CcchhhHHHHHH----hcCC--CcEEEEeec
Q 000823 664 LENSGTEDLDKLLINTLFEVVFSES-RSCPFILFMKDAEKSIAG-----NSDSYSTFKSRL----EKLP--DKVIVIGSH 731 (1267)
Q Consensus 664 ~~~~~~e~~~k~~i~~L~ev~~~~~-~~~p~ILfi~di~~~l~g-----~~~~~~~lk~~L----~~l~--g~VvvIGst 731 (1267)
+++|++| ....++.+|+.+.+.+ ...|+||||||+|.++.. +.+....+.+.| +.+. ++|+|||+|
T Consensus 263 l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~AT 340 (512)
T TIGR03689 263 LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGAS 340 (512)
T ss_pred cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEecc
Confidence 4567777 6668888998887643 357999999999998752 223322333333 3332 689999999
Q ss_pred ccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhh
Q 000823 732 THTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 811 (1267)
Q Consensus 732 ~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe 811 (1267)
|+++..|++ |.|||| |+.+|+|++|+.++|.+||+.++.
T Consensus 341 N~~d~LDpA-------LlRpGR----------------------------------fD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 341 NREDMIDPA-------ILRPGR----------------------------------LDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred CChhhCCHh-------hcCccc----------------------------------cceEEEeCCCCHHHHHHHHHHHhh
Confidence 999988888 888888 889999999999999999998875
Q ss_pred hhhhhhhhccCchhHHHHhhhcCCCCccccceecc
Q 000823 812 RDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIR 846 (1267)
Q Consensus 812 ~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~ 846 (1267)
.... ....+....|+.++++.++|.+
T Consensus 380 ~~l~---------l~~~l~~~~g~~~a~~~al~~~ 405 (512)
T TIGR03689 380 DSLP---------LDADLAEFDGDREATAAALIQR 405 (512)
T ss_pred ccCC---------chHHHHHhcCCCHHHHHHHHHH
Confidence 4211 1122333456777777666554
No 83
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.57 E-value=4.8e-14 Score=155.58 Aligned_cols=203 Identities=22% Similarity=0.281 Sum_probs=144.9
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhcc
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1011 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~ 1011 (1267)
.+|+|.+|++++|++|+-++.....+ ....-++|||||||.|||+||..||+++|.++...+.+-+..
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r---------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKR---------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhc---------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 47899999999999999888753322 234469999999999999999999999999988887765421
Q ss_pred CccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhc-cCCccc------CCCcEEEEEecCC
Q 000823 1012 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW-DGLRTK------DTERILVLAATNR 1084 (1267)
Q Consensus 1012 Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~l-dgl~~~------~~~~VlVIaTTN~ 1084 (1267)
..-+..++.... ..+|||||||++|. +...+.+.-.+..|..-+ -|--.. +-.++-+|++|.+
T Consensus 91 ---~gDlaaiLt~Le--~~DVLFIDEIHrl~-----~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr 160 (332)
T COG2255 91 ---PGDLAAILTNLE--EGDVLFIDEIHRLS-----PAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR 160 (332)
T ss_pred ---hhhHHHHHhcCC--cCCeEEEehhhhcC-----hhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccc
Confidence 222333333322 34799999999883 333344444444432211 111110 1246789999999
Q ss_pred CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHH
Q 000823 1085 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKVIFLSHSLICNV 1157 (1267)
Q Consensus 1085 p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~v 1157 (1267)
...|...++.||..+..+..++.++..+|+.......++. .+....+||+++.| +++=--+|+....-.+.+
T Consensus 161 ~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~V 233 (332)
T COG2255 161 AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFAQV 233 (332)
T ss_pred cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988777766 34457899999999 555444455544444444
No 84
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=9.4e-16 Score=168.16 Aligned_cols=188 Identities=18% Similarity=0.279 Sum_probs=152.5
Q ss_pred eecccCCCCCCCCC-C----CCCCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc-
Q 000823 632 GVRFDKPIPDGVDL-G----GQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA- 705 (1267)
Q Consensus 632 gv~Fd~~~~~~~~l-~----~~c~~~~~ff~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~- 705 (1267)
||+.-++||||+|| | |+.| -+|.--+|..-..++.|| .-++++.||.|+.+ +.|.|+||||||.+=.
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTS--ATFlRvvGseLiQkylGd--GpklvRqlF~vA~e---~apSIvFiDEIdAiGtK 293 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTS--ATFLRVVGSELIQKYLGD--GPKLVRELFRVAEE---HAPSIVFIDEIDAIGTK 293 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccc--hhhhhhhhHHHHHHHhcc--chHHHHHHHHHHHh---cCCceEEeehhhhhccc
Confidence 88999999999993 3 3333 567666788888899998 88999999999999 9999999999998433
Q ss_pred -------CCcchhhHHHHHHhcC-----CCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccccccc
Q 000823 706 -------GNSDSYSTFKSRLEKL-----PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDR 773 (1267)
Q Consensus 706 -------g~~~~~~~lk~~L~~l-----~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~ 773 (1267)
|..++-......|.+| +|.|-||=|||+-+.-||+ |-||||
T Consensus 294 Ryds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPa-------LiRPGr-------------------- 346 (440)
T KOG0726|consen 294 RYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPA-------LIRPGR-------------------- 346 (440)
T ss_pred cccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHh-------hcCCCc--------------------
Confidence 4445554555555555 5799999999999999999 999999
Q ss_pred CCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccchH
Q 000823 774 GKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNE 853 (1267)
Q Consensus 774 ~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~ 853 (1267)
.+++|+|++||+..+..||.+|+.+ ..+..+|++...+.....++|||+.++|+++-++
T Consensus 347 --------------IDrKIef~~pDe~TkkkIf~IHTs~----Mtl~~dVnle~li~~kddlSGAdIkAictEaGll--- 405 (440)
T KOG0726|consen 347 --------------IDRKIEFPLPDEKTKKKIFQIHTSR----MTLAEDVNLEELIMTKDDLSGADIKAICTEAGLL--- 405 (440)
T ss_pred --------------cccccccCCCchhhhceeEEEeecc----cchhccccHHHHhhcccccccccHHHHHHHHhHH---
Confidence 5589999999999999999999998 5567788888877778899999999999984443
Q ss_pred HHHHHHHHHHHhhhccCCCCCCcccccccchhHHHHHHHH
Q 000823 854 SAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIF 893 (1267)
Q Consensus 854 aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~~l 893 (1267)
|+ ++.++.++.+||..+.+.+
T Consensus 406 --------Al-----------RerRm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 406 --------AL-----------RERRMKVTMEDFKKAKEKV 426 (440)
T ss_pred --------HH-----------HHHHhhccHHHHHHHHHHH
Confidence 11 3356778889998876643
No 85
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.6e-14 Score=170.74 Aligned_cols=181 Identities=19% Similarity=0.259 Sum_probs=134.4
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 996 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~--------------- 996 (1267)
.+|+|++|++++++.|++.+.. .+.++.+||+||+|+|||++|+++|+.+++
T Consensus 13 qtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 5899999999999999998863 223356899999999999999999999976
Q ss_pred --------------ceEEeeccccchhccCccHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHH
Q 000823 997 --------------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMK 1058 (1267)
Q Consensus 997 --------------~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~~~~~il 1058 (1267)
.+++++... ...-..++.+.+.+.. ....|+||||+|.|- ....
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~Aa 141 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHAF 141 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHHH
Confidence 223333221 1122345555554432 235799999999883 2345
Q ss_pred HhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCc-ccHHHHHHHcC
Q 000823 1059 NEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD-VDFDAIANMTD 1137 (1267)
Q Consensus 1059 ~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~d-vdl~~LA~~Te 1137 (1267)
|.||..|+. ...++++|.+||.+..|.+.+++|| .++.|..++.++..+.|+.++.++++..+ ..+..|++.++
T Consensus 142 NALLKTLEE----PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~ 216 (700)
T PRK12323 142 NAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQ 216 (700)
T ss_pred HHHHHhhcc----CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 566666654 2467888899999999999999999 89999999999999999999988776633 34677888888
Q ss_pred CCCHHHHHHHHh
Q 000823 1138 GYSGSDLKVIFL 1149 (1267)
Q Consensus 1138 GySg~DL~~Lv~ 1149 (1267)
| +.++...++.
T Consensus 217 G-s~RdALsLLd 227 (700)
T PRK12323 217 G-SMRDALSLTD 227 (700)
T ss_pred C-CHHHHHHHHH
Confidence 8 6666555544
No 86
>CHL00176 ftsH cell division protein; Validated
Probab=99.56 E-value=1.8e-14 Score=178.86 Aligned_cols=237 Identities=19% Similarity=0.283 Sum_probs=166.3
Q ss_pred ccCCccccccccccccccchhHHHHHHHHHhhcccCCcc-cccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCe
Q 000823 417 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDH-AKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 495 (1267)
Q Consensus 417 i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hL~~~~~-~~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~ 495 (1267)
+....+..++|+++.-+ +..|..|.+.+.. |++++. ..++ ...++.|||+|||| ..+++||||||++.+++
T Consensus 172 ~~~~~~~~~~f~dv~G~--~~~k~~l~eiv~~-lk~~~~~~~~g---~~~p~gVLL~GPpG--TGKT~LAralA~e~~~p 243 (638)
T CHL00176 172 FQMEADTGITFRDIAGI--EEAKEEFEEVVSF-LKKPERFTAVG---AKIPKGVLLVGPPG--TGKTLLAKAIAGEAEVP 243 (638)
T ss_pred hhcccCCCCCHHhccCh--HHHHHHHHHHHHH-HhCHHHHhhcc---CCCCceEEEECCCC--CCHHHHHHHHHHHhCCC
Confidence 34556778999998776 8888888887654 777654 2333 34567899999999 89999999999999988
Q ss_pred EEEEeccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 000823 496 LLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLT 575 (1267)
Q Consensus 496 LL~~D~~~~~~~~~~~e~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 575 (1267)
++.++.+.|..
T Consensus 244 ~i~is~s~f~~--------------------------------------------------------------------- 254 (638)
T CHL00176 244 FFSISGSEFVE--------------------------------------------------------------------- 254 (638)
T ss_pred eeeccHHHHHH---------------------------------------------------------------------
Confidence 77665433321
Q ss_pred ccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceecccCCCCCCCCCCCCCCCCccc
Q 000823 576 SAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGF 655 (1267)
Q Consensus 576 ~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgv~Fd~~~~~~~~l~~~c~~~~~f 655 (1267)
.|+|
T Consensus 255 ----------------~~~g------------------------------------------------------------ 258 (638)
T CHL00176 255 ----------------MFVG------------------------------------------------------------ 258 (638)
T ss_pred ----------------Hhhh------------------------------------------------------------
Confidence 0000
Q ss_pred ccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc--------CCcchhhHHHHHHhcC-----C
Q 000823 656 FCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFKSRLEKL-----P 722 (1267)
Q Consensus 656 f~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~--------g~~~~~~~lk~~L~~l-----~ 722 (1267)
. ....++.+|+.+.. ..|+||||||||.+.. ++.+.-..+...|..+ .
T Consensus 259 --------------~--~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 259 --------------V--GAARVRDLFKKAKE---NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred --------------h--hHHHHHHHHHHHhc---CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 0 01145667777766 8999999999999753 1222223333333222 3
Q ss_pred CcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHH
Q 000823 723 DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEAL 802 (1267)
Q Consensus 723 g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~R 802 (1267)
.+|+|||+||+++..|++ |+|||| |+++|.|++|+.++|
T Consensus 320 ~~ViVIaaTN~~~~LD~A-------LlRpGR----------------------------------Fd~~I~v~lPd~~~R 358 (638)
T CHL00176 320 KGVIVIAATNRVDILDAA-------LLRPGR----------------------------------FDRQITVSLPDREGR 358 (638)
T ss_pred CCeeEEEecCchHhhhhh-------hhcccc----------------------------------CceEEEECCCCHHHH
Confidence 489999999999887887 778888 888999999999999
Q ss_pred HHHHHHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCccccccc
Q 000823 803 LASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLS 882 (1267)
Q Consensus 803 l~IwK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is 882 (1267)
.+||+.++.. .....+++....+-.+.|++|+||..+|.+++.. |+ ...+..|+
T Consensus 359 ~~IL~~~l~~----~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~-----------a~-----------r~~~~~It 412 (638)
T CHL00176 359 LDILKVHARN----KKLSPDVSLELIARRTPGFSGADLANLLNEAAIL-----------TA-----------RRKKATIT 412 (638)
T ss_pred HHHHHHHHhh----cccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHH-----------HH-----------HhCCCCcC
Confidence 9999998766 3334455666667778899999998877652111 11 11234678
Q ss_pred chhHHHHHHH
Q 000823 883 CESIQYGIGI 892 (1267)
Q Consensus 883 ~ed~~~al~~ 892 (1267)
.++|+.++..
T Consensus 413 ~~dl~~Ai~r 422 (638)
T CHL00176 413 MKEIDTAIDR 422 (638)
T ss_pred HHHHHHHHHH
Confidence 8888888764
No 87
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=7.5e-14 Score=172.02 Aligned_cols=181 Identities=19% Similarity=0.240 Sum_probs=133.1
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|+|++|++++++.|+..+.. .+..+.+||+||+|||||++|+++|+.+++.
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 5899999999999999988752 2234568999999999999999999998652
Q ss_pred ----------eEEeeccccchhccCccHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 998 ----------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
+++++..+ ...-..++.+++.+.. ....||||||+|.|. ....|.|+.
T Consensus 80 r~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~NALLK 141 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAFNAMLK 141 (830)
T ss_pred HHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHHHHHHH
Confidence 33333321 1122345556555432 235799999999883 123444555
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
.|+.. ..++.||.+||.+..|.+.|++|| .+|.|..++.++..++|+.++.++++. .+..+..|++..+| +.+
T Consensus 142 tLEEP----P~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smR 215 (830)
T PRK07003 142 TLEEP----PPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMR 215 (830)
T ss_pred HHHhc----CCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 44442 457889999999999999999999 889999999999999999999988775 44557888999998 445
Q ss_pred HHHHHHh
Q 000823 1143 DLKVIFL 1149 (1267)
Q Consensus 1143 DL~~Lv~ 1149 (1267)
+.-.++.
T Consensus 216 dALsLLd 222 (830)
T PRK07003 216 DALSLTD 222 (830)
T ss_pred HHHHHHH
Confidence 5444443
No 88
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.55 E-value=6.8e-14 Score=176.47 Aligned_cols=172 Identities=21% Similarity=0.354 Sum_probs=129.4
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEEee
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1002 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el----------g~~fi~I~ 1002 (1267)
.++.+.|.+...+.+.+.+.. +...++||+||||||||++|+++|... +..++.++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 345678888888877776652 123578999999999999999999875 45666777
Q ss_pred ccccc--hhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEE
Q 000823 1003 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1080 (1267)
Q Consensus 1003 ~seL~--s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIa 1080 (1267)
...++ ..+.|+.+..++.+|..+.+..++||||||||.|++.+...+.+.....++..++ ....+.+|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEe
Confidence 66665 3578888999999999998888999999999999877643222222223333332 246789999
Q ss_pred ecCCCC-----CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCccc
Q 000823 1081 ATNRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVD 1128 (1267)
Q Consensus 1081 TTN~p~-----~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvd 1128 (1267)
+|+.++ ..|+++.||| ..|.++.|+.+++.+||+.+..+.....++.
T Consensus 321 ATt~~E~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~ 372 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHHDVR 372 (758)
T ss_pred cCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCC
Confidence 999753 6799999999 5899999999999999998876654443443
No 89
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.2e-13 Score=165.91 Aligned_cols=172 Identities=22% Similarity=0.364 Sum_probs=129.6
Q ss_pred hhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccc------cc-
Q 000823 935 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------IT- 1007 (1267)
Q Consensus 935 ~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~se------L~- 1007 (1267)
+|-.|++++|+++.+++.- .+.+.....+-+.|+||||+|||++|+.||+.++..|++++... +.
T Consensus 411 eDHYgm~dVKeRILEfiAV--------~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAV--------GKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHH--------HhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 4678999999999998852 11111222345889999999999999999999999999998643 32
Q ss_pred --hhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchH-HHHHHHHH-----hhhhhccCCcccCCCcEEEE
Q 000823 1008 --SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH-EAMRKMKN-----EFMVNWDGLRTKDTERILVL 1079 (1267)
Q Consensus 1008 --s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~-~~~~~il~-----eLL~~ldgl~~~~~~~VlVI 1079 (1267)
..|+|..++.+-+.+.......| +++|||||.+. ++..++. .++-.++. .|+...-.++. +-.+|++|
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG--~g~qGDPasALLElLDPEQNanFlDHYLdVp~-DLSkVLFi 558 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG--SGHQGDPASALLELLDPEQNANFLDHYLDVPV-DLSKVLFI 558 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC--CCCCCChHHHHHHhcChhhccchhhhcccccc-chhheEEE
Confidence 24889999998888888877776 88999999996 3233322 23323321 12222222222 34689999
Q ss_pred EecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHh
Q 000823 1080 AATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILA 1119 (1267)
Q Consensus 1080 aTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~ 1119 (1267)
||+|..+.|++.|+.|+ .+|++.-+..++..+|.+.+|-
T Consensus 559 cTAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred EeccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhh
Confidence 99999999999999999 8999999999999999998873
No 90
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.54 E-value=4e-14 Score=166.07 Aligned_cols=147 Identities=17% Similarity=0.297 Sum_probs=105.0
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcCCc--------chhhHHHHHH---hcC--CCcEEEEeecccCCCccccCC
Q 000823 676 LINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--------DSYSTFKSRL---EKL--PDKVIVIGSHTHTDNRKEKSH 742 (1267)
Q Consensus 676 ~i~~L~ev~~~~~~~~p~ILfi~di~~~l~g~~--------~~~~~lk~~L---~~l--~g~VvvIGst~~~d~~~~~~~ 742 (1267)
.+..+|+.+.. ..|.||||||+|.+...+. +.-..+-..| +.+ .++|+||+++|+++..+++
T Consensus 203 ~i~~~f~~a~~---~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~a-- 277 (364)
T TIGR01242 203 LVREIFELAKE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPA-- 277 (364)
T ss_pred HHHHHHHHHHh---cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChh--
Confidence 56677777766 8899999999999764211 1112222222 222 4689999999999877777
Q ss_pred CCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccC
Q 000823 743 PGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGN 822 (1267)
Q Consensus 743 ~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~N 822 (1267)
|+|||| |+..|+|++|+.++|.+||+.++.+ .....+
T Consensus 278 -----l~r~gr----------------------------------fd~~i~v~~P~~~~r~~Il~~~~~~----~~l~~~ 314 (364)
T TIGR01242 278 -----LLRPGR----------------------------------FDRIIEVPLPDFEGRLEILKIHTRK----MKLAED 314 (364)
T ss_pred -----hcCccc----------------------------------CceEEEeCCcCHHHHHHHHHHHHhc----CCCCcc
Confidence 667777 8889999999999999999988755 444455
Q ss_pred chhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccccchhHHHHHHH
Q 000823 823 LNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGI 892 (1267)
Q Consensus 823 v~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~~ 892 (1267)
++....+..+.|++|+||..+|.++... |+. .....|+.++|..|+..
T Consensus 315 ~~~~~la~~t~g~sg~dl~~l~~~A~~~-----------a~~-----------~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 315 VDLEAIAKMTEGASGADLKAICTEAGMF-----------AIR-----------EERDYVTMDDFIKAVEK 362 (364)
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHHHH-----------HHH-----------hCCCccCHHHHHHHHHH
Confidence 6677777788999999999888762221 111 12446888888887763
No 91
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.6e-13 Score=163.95 Aligned_cols=180 Identities=18% Similarity=0.240 Sum_probs=132.3
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|+|++|++.+.+.|+..+.. .+.+..+||+||+|||||++|+++|+.+++.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~-------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKS-------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 5899999999999999888763 1223469999999999999999999999753
Q ss_pred ----------eEEeeccccchhccCccHHHHHHHHHHHH----hcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 998 ----------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
|+.++++.- ..-..++.+.+.+. .....|+||||+|.|- ....+.|+.
T Consensus 82 ~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALLK 143 (484)
T PRK14956 82 LEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALLK 143 (484)
T ss_pred HHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHHH
Confidence 333333210 11223444444333 2345799999999883 234556666
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
.++. ...++++|.+|+.++.|.+++++|+ .++.|..++.++..++++.++..+++. .+..+..|++.++| +.+
T Consensus 144 tLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~R 217 (484)
T PRK14956 144 TLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVR 217 (484)
T ss_pred Hhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHH
Confidence 6644 2467888989999999999999999 789999999999999999999988765 44557888998888 444
Q ss_pred HHHHHH
Q 000823 1143 DLKVIF 1148 (1267)
Q Consensus 1143 DL~~Lv 1148 (1267)
|.-.++
T Consensus 218 dAL~lL 223 (484)
T PRK14956 218 DMLSFM 223 (484)
T ss_pred HHHHHH
Confidence 444344
No 92
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.51 E-value=2.4e-13 Score=166.66 Aligned_cols=192 Identities=21% Similarity=0.311 Sum_probs=119.8
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEEe
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1001 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el----------g~~fi~I 1001 (1267)
.+|+++.|.+...+.|+..+.. ..+.++||+||||||||++|+++.+.+ +.+|+.+
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~--------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCG--------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 5799999999999888865431 123589999999999999999998753 4689999
Q ss_pred ecccc-------chhccCccH--HHH-HHHHH----------HHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhh
Q 000823 1002 SMSSI-------TSKWFGEGE--KYV-KAVFS----------LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 1061 (1267)
Q Consensus 1002 ~~seL-------~s~~~Ge~e--~~v-~~lF~----------~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eL 1061 (1267)
+|... ....+|... .+. ...|. ...+...++||||||+.| +...+..+.+++++-
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L-----~~~~q~~LL~~Le~~ 202 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL-----HPVQMNKLLKVLEDR 202 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC-----CHHHHHHHHHHHHhC
Confidence 98642 111122100 000 00000 111223489999999988 323333333444332
Q ss_pred hhhccCCc-----------------ccCCCc-EEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCC
Q 000823 1062 MVNWDGLR-----------------TKDTER-ILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDL 1123 (1267)
Q Consensus 1062 L~~ldgl~-----------------~~~~~~-VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l 1123 (1267)
...+.... ..-+.. .+|++||+.++.+++++++|| ..+.|+.++.+++.+|++..+++.++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k~~i 281 (531)
T TIGR02902 203 KVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEKIGI 281 (531)
T ss_pred eeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 22221100 000122 455667788999999999999 67889999999999999999988765
Q ss_pred C-CcccHHHHHHHcCCCCHHHHH
Q 000823 1124 S-PDVDFDAIANMTDGYSGSDLK 1145 (1267)
Q Consensus 1124 ~-~dvdl~~LA~~TeGySg~DL~ 1145 (1267)
. ++..++.|+..+. +++++.
T Consensus 282 ~is~~al~~I~~y~~--n~Rel~ 302 (531)
T TIGR02902 282 NLEKHALELIVKYAS--NGREAV 302 (531)
T ss_pred CcCHHHHHHHHHhhh--hHHHHH
Confidence 4 2233445554432 455555
No 93
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=7.6e-13 Score=159.76 Aligned_cols=171 Identities=19% Similarity=0.253 Sum_probs=124.0
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 996 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~--------------- 996 (1267)
.+|+|++|++++.+.|+..+.. .+.+.++||+||||||||++|+++|+.+++
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~-------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKK-------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 5899999999999998887753 123457999999999999999999999865
Q ss_pred ---------ceEEeeccccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 997 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 997 ---------~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
.++.++++.- ..-..++.+.+.+... ...||||||+|.|. ...++.|+.
T Consensus 78 ~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~~LLk 139 (472)
T PRK14962 78 RSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFNALLK 139 (472)
T ss_pred HHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHHHHHH
Confidence 3455544321 1123455555554432 34699999999883 122344555
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCC
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDG 1138 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeG 1138 (1267)
.++.. +..+++|++|+.+..+.+++++|| .++.|..++.++...+++..+...++. .+..+..|++.+.|
T Consensus 140 ~LE~p----~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G 210 (472)
T PRK14962 140 TLEEP----PSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG 210 (472)
T ss_pred HHHhC----CCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 55442 345777777777889999999999 689999999999999999999877654 34446778887765
No 94
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=2e-14 Score=164.47 Aligned_cols=111 Identities=23% Similarity=0.330 Sum_probs=99.8
Q ss_pred CccCCCcchhhcccCCCCcceeeeCCeeEEcCCCCcceeecCCCCccceEEEEEE-----------ecCCceEEEEEEec
Q 000823 120 TFETSTPWCRLLSQSGQNSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHV-----------QSEGSAVAMVESIG 188 (1267)
Q Consensus 120 ~~~~~~pWgrL~s~~~~~~~l~i~~~~~tvGr~~~Cd~~l~~~~~s~~~c~i~~~-----------~~~~~~~~~Led~s 188 (1267)
+-....||+||+......+++++.+++||+||+.+||+.+....+|.+|+++... ..+++.++||+|+|
T Consensus 39 ~~~~~~~r~r~~~v~~~~~~~d~~nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS 118 (475)
T KOG0615|consen 39 QCATVKPRARLVGVRRGIKSIDLANDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHS 118 (475)
T ss_pred ccccccchhhhcceeeccccceeccceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecc
Confidence 3334567999999999999999999999999999999999999999998887643 23466699999999
Q ss_pred CCceEEcCeeecCCCeeEccCCCEEEEeecCCeEEEEEechh
Q 000823 189 SKGLQVNGKNLKKNTSCELRSGDEVVFGSLGNHAYIFQQLLN 230 (1267)
Q Consensus 189 ~nGt~VNg~~~gk~~~~~L~~gDeI~f~~~~~~ayiF~~l~~ 230 (1267)
+||||||.+.+|||.+.+|+|||||.++.+..++|+|.+++.
T Consensus 119 ~nGT~VN~e~i~k~~~r~lkN~dei~is~p~~~~~v~~~~s~ 160 (475)
T KOG0615|consen 119 RNGTFVNDEMIGKGLSRILKNGDEISISIPALKIFVFEDLSR 160 (475)
T ss_pred cCcccccHhHhhccccccccCCCEEEeccchhheeeeecccc
Confidence 999999999999999999999999999999999999999844
No 95
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.50 E-value=1.1e-12 Score=168.43 Aligned_cols=185 Identities=22% Similarity=0.373 Sum_probs=140.9
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEEee
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1002 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el----------g~~fi~I~ 1002 (1267)
.++.++|.++..+.+.+.+.. +...++||+||||||||++|+++|..+ +..++.++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 467889999999888887752 233589999999999999999999986 47899999
Q ss_pred ccccc--hhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEE
Q 000823 1003 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1080 (1267)
Q Consensus 1003 ~seL~--s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIa 1080 (1267)
+..++ .+|.|+.+..++.+|+.+....+.||||||||.|++.....+.... ..++...+ .++.+.+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~-a~lLkp~l---------~rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDA-ANILKPAL---------ARGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccH-HHHhHHHH---------hCCCcEEEE
Confidence 98876 4678999999999999998888899999999999876543332222 12222211 245688888
Q ss_pred ecCCC-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh----CCCC-CcccHHHHHHHcCCCCHH
Q 000823 1081 ATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK----EDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1081 TTN~p-----~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k----~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
+|+.. ...|+++.+|| ..|.++.|+.++...|++.+... .++. .+..+..++.++.+|.+.
T Consensus 313 aTt~~ey~~~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~ 383 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIAD 383 (821)
T ss_pred eCCHHHHHHHHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcc
Confidence 88865 35789999999 56899999999999999876543 2332 344477788888887653
No 96
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=7.3e-13 Score=162.07 Aligned_cols=177 Identities=22% Similarity=0.244 Sum_probs=130.0
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 996 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~--------------- 996 (1267)
.+|+|++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 5899999999999999988862 233468899999999999999999999865
Q ss_pred ---------ceEEeeccccchhccCccHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 997 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 997 ---------~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
.++.+++++- ..-..++.+...+.. ....|+||||+|.|- ....+.|+.
T Consensus 79 ~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------~~A~NALLK 140 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------THSFNALLK 140 (702)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC------------HHHHHHHHH
Confidence 3444444321 122345555554432 235799999999882 123444555
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
.++.. ...+.+|.+|+.+..+.+.+++|+ .++.|..++.++..+.++.++.++++. .+..+..|++.+.| +.+
T Consensus 141 tLEEP----P~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLR 214 (702)
T PRK14960 141 TLEEP----PEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLR 214 (702)
T ss_pred HHhcC----CCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55542 345677777888888889999999 789999999999999999999988766 34457788888877 555
Q ss_pred HHH
Q 000823 1143 DLK 1145 (1267)
Q Consensus 1143 DL~ 1145 (1267)
++-
T Consensus 215 dAL 217 (702)
T PRK14960 215 DAL 217 (702)
T ss_pred HHH
Confidence 544
No 97
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.50 E-value=1.2e-13 Score=172.80 Aligned_cols=148 Identities=15% Similarity=0.265 Sum_probs=106.1
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcC--------Ccc---hhhHHHHHHhcC--CCcEEEEeecccCCCccccCC
Q 000823 676 LINTLFEVVFSESRSCPFILFMKDAEKSIAG--------NSD---SYSTFKSRLEKL--PDKVIVIGSHTHTDNRKEKSH 742 (1267)
Q Consensus 676 ~i~~L~ev~~~~~~~~p~ILfi~di~~~l~g--------~~~---~~~~lk~~L~~l--~g~VvvIGst~~~d~~~~~~~ 742 (1267)
.++.+|+.+.. ..|+||||||||.+... +.+ ..+.|-..|+.. ...|+|||+||+++..|++
T Consensus 232 ~~~~~f~~a~~---~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A-- 306 (644)
T PRK10733 232 RVRDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA-- 306 (644)
T ss_pred HHHHHHHHHHh---cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH--
Confidence 45566666665 78999999999997541 111 222222223333 2379999999999988888
Q ss_pred CCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccC
Q 000823 743 PGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGN 822 (1267)
Q Consensus 743 ~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~N 822 (1267)
|+|||| |+++|+|++|+.++|.+||+.++.+ .....+
T Consensus 307 -----l~RpgR----------------------------------fdr~i~v~~Pd~~~R~~Il~~~~~~----~~l~~~ 343 (644)
T PRK10733 307 -----LLRPGR----------------------------------FDRQVVVGLPDVRGREQILKVHMRR----VPLAPD 343 (644)
T ss_pred -----HhCCcc----------------------------------cceEEEcCCCCHHHHHHHHHHHhhc----CCCCCc
Confidence 888888 8899999999999999999998866 445556
Q ss_pred chhHHHHhhhcCCCCccccceeccccccchHHHHHHHHHHHHhhhccCCCCCCcccccccchhHHHHHHHH
Q 000823 823 LNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIF 893 (1267)
Q Consensus 823 v~~l~~vL~~~glscaDL~~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~~l 893 (1267)
++....+-.+.||+|+||..+|.+++.. |+ ...+..|+..+|+.++..+
T Consensus 344 ~d~~~la~~t~G~sgadl~~l~~eAa~~-----------a~-----------r~~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 344 IDAAIIARGTPGFSGADLANLVNEAALF-----------AA-----------RGNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred CCHHHHHhhCCCCCHHHHHHHHHHHHHH-----------HH-----------HcCCCcccHHHHHHHHHHH
Confidence 6666667778999999999988762221 11 1134467788888776643
No 98
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=1.7e-12 Score=152.42 Aligned_cols=177 Identities=20% Similarity=0.261 Sum_probs=126.2
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|+|++|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 5899999999999999888752 1233568999999999999999999998642
Q ss_pred ----------eEEeeccccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 998 ----------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
++.++.+. ...-..++.+.+.+... ...|+||||+|.+- ....+.|+.
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLLk 141 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALLK 141 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHHH
Confidence 22222211 01223456666554432 24699999999872 123344555
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
.++.. +..+.+|.+|+.++.+.+.+++|+ ..+.|..|+.++..++++..+++.++. ++..+..|+..+.| +.+
T Consensus 142 ~lEe~----~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R 215 (363)
T PRK14961 142 TLEEP----PQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMR 215 (363)
T ss_pred HHhcC----CCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55442 345667777787888999999999 789999999999999999999887754 34456778888877 455
Q ss_pred HHH
Q 000823 1143 DLK 1145 (1267)
Q Consensus 1143 DL~ 1145 (1267)
++.
T Consensus 216 ~al 218 (363)
T PRK14961 216 DAL 218 (363)
T ss_pred HHH
Confidence 444
No 99
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.48 E-value=9.2e-13 Score=148.48 Aligned_cols=174 Identities=26% Similarity=0.468 Sum_probs=119.6
Q ss_pred ccchhccccHHHHHH---HHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---eEEeeccc
Q 000823 932 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSS 1005 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~---L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~---fi~I~~se 1005 (1267)
.+++|.+|++++..+ |+.+|. + ..+.+++||||||||||+||+.|+.....+ |+.+++..
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ie----------q----~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIE----------Q----NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHH----------c----CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 367777887766533 333333 1 234589999999999999999999988655 77777643
Q ss_pred cchhccCccHHHHHHHHHHHHhc-----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEE
Q 000823 1006 ITSKWFGEGEKYVKAVFSLASKI-----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1080 (1267)
Q Consensus 1006 L~s~~~Ge~e~~v~~lF~~A~k~-----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIa 1080 (1267)
....-++.+|+.+++. ...|||||||+++ +.. -...|+-. -+++.|++|+
T Consensus 201 -------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----Nks-------QQD~fLP~------VE~G~I~lIG 255 (554)
T KOG2028|consen 201 -------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----NKS-------QQDTFLPH------VENGDITLIG 255 (554)
T ss_pred -------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----hhh-------hhhcccce------eccCceEEEe
Confidence 3345688899888654 3579999999977 211 11233322 2356678887
Q ss_pred ec--CCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhC--------CCC------CcccHHHHHHHcCCCCHHHH
Q 000823 1081 AT--NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE--------DLS------PDVDFDAIANMTDGYSGSDL 1144 (1267)
Q Consensus 1081 TT--N~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~--------~l~------~dvdl~~LA~~TeGySg~DL 1144 (1267)
+| |....|..++++|+ .++.+.....++...||..-+.-. ++. ++--++.|+..++|.....|
T Consensus 256 ATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL 334 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL 334 (554)
T ss_pred cccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH
Confidence 76 55678999999999 788899999999999998855421 111 12236778888887554444
Q ss_pred H
Q 000823 1145 K 1145 (1267)
Q Consensus 1145 ~ 1145 (1267)
.
T Consensus 335 N 335 (554)
T KOG2028|consen 335 N 335 (554)
T ss_pred H
Confidence 3
No 100
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=9.9e-13 Score=160.20 Aligned_cols=180 Identities=17% Similarity=0.201 Sum_probs=131.1
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|+|++|++.+.+.|+..+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 5899999999999999998863 2233568999999999999999999999653
Q ss_pred ----------eEEeeccccchhccCccHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 998 ----------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
+++++.+. ...-..++.+.+.+.. ....|+||||+|.|. ....+.|+.
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------~~a~naLLk 141 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------GHSFNALLK 141 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------HHHHHHHHH
Confidence 44554432 1122345555554432 234699999999883 223455555
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
.++.. +..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++..+.++.++.++++. .+..+..|++.+.| +.+
T Consensus 142 ~LEep----p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR 215 (509)
T PRK14958 142 TLEEP----PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVR 215 (509)
T ss_pred HHhcc----CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 55543 345777777788888888999999 788999999999999999999988765 34457788888877 556
Q ss_pred HHHHHH
Q 000823 1143 DLKVIF 1148 (1267)
Q Consensus 1143 DL~~Lv 1148 (1267)
++..++
T Consensus 216 ~al~lL 221 (509)
T PRK14958 216 DALSLL 221 (509)
T ss_pred HHHHHH
Confidence 655333
No 101
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.48 E-value=5.9e-13 Score=158.12 Aligned_cols=179 Identities=23% Similarity=0.326 Sum_probs=116.6
Q ss_pred ccccHHHHHHHHHHHhCccCchhhhhc--CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch-hccCc
Q 000823 937 IGALENVKDTLKELVMLPLQRPELFCK--GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGE 1013 (1267)
Q Consensus 937 I~Gle~vk~~L~e~V~~pl~~~e~f~~--~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s-~~~Ge 1013 (1267)
++|++.+++.|...+..+.++...... .....+..++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 789999999998777544333211100 012234578999999999999999999999999999999988753 57776
Q ss_pred cH-HHHHHHHHH----HHhcCCeEEEEccchhhhcCCCCCchH--HHHHHHHHhhhhhccCCc---------ccCCCcEE
Q 000823 1014 GE-KYVKAVFSL----ASKIAPSVIFVDEVDSMLGRRENPGEH--EAMRKMKNEFMVNWDGLR---------TKDTERIL 1077 (1267)
Q Consensus 1014 ~e-~~v~~lF~~----A~k~~PsIIfIDEID~L~~~r~~~~~~--~~~~~il~eLL~~ldgl~---------~~~~~~Vl 1077 (1267)
.. ..+..++.. ..+..++||||||||.+...+.++... .....+.+.|+..|++-. ..+..+.+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 53 344444432 234578999999999997653322110 011245566666666431 11123455
Q ss_pred EEEecCCCC----------------------------------------------------CCcHHHHhcccccccCCCC
Q 000823 1078 VLAATNRPF----------------------------------------------------DLDEAVIRRLPRRLMVNLP 1105 (1267)
Q Consensus 1078 VIaTTN~p~----------------------------------------------------~Ld~aLlrRFd~vI~~~~P 1105 (1267)
+|.|+|-.. -+.|+|+.|++.++.|..+
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L 312 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEEL 312 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCC
Confidence 666655411 1356777788888888888
Q ss_pred CHHHHHHHHH
Q 000823 1106 DAPNRAKILQ 1115 (1267)
Q Consensus 1106 d~eeR~eIL~ 1115 (1267)
+.+++.+|+.
T Consensus 313 ~~~~L~~Il~ 322 (412)
T PRK05342 313 DEEALVRILT 322 (412)
T ss_pred CHHHHHHHHH
Confidence 8888887776
No 102
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.48 E-value=3.3e-13 Score=173.03 Aligned_cols=184 Identities=20% Similarity=0.329 Sum_probs=136.7
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEEee
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1002 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el----------g~~fi~I~ 1002 (1267)
++++++|.++....+.+.+.. +...++||+||||||||++|+.+|+.+ +..++.++
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 567889998876666665531 223589999999999999999999986 35678888
Q ss_pred ccccch--hccCccHHHHHHHHHHHHhc-CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEE
Q 000823 1003 MSSITS--KWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1079 (1267)
Q Consensus 1003 ~seL~s--~~~Ge~e~~v~~lF~~A~k~-~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVI 1079 (1267)
+..+.. .+.|+.+..++.+|+.++.. .+.|||||||+.|.+.+...+...+. +.|.-.+ .++.+.+|
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~----n~Lkp~l------~~G~l~~I 320 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAA----NLLKPAL------ARGELRTI 320 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHH----HHhhHHh------hCCCeEEE
Confidence 877753 57889999999999998754 57899999999998765433322221 2222112 24678899
Q ss_pred EecCCC-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhC----CCC-CcccHHHHHHHcCCCCH
Q 000823 1080 AATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE----DLS-PDVDFDAIANMTDGYSG 1141 (1267)
Q Consensus 1080 aTTN~p-----~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~----~l~-~dvdl~~LA~~TeGySg 1141 (1267)
+||+.. ..+|++|.||| ..|.|+.|+.+++.+||+.+.... ++. .+..+..++.++.+|-.
T Consensus 321 gaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred EecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 998863 46899999999 689999999999999987776543 222 45557788888887754
No 103
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=9.7e-13 Score=165.00 Aligned_cols=180 Identities=21% Similarity=0.247 Sum_probs=129.5
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce-------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------- 998 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~f------------- 998 (1267)
.+|++|+|++.+++.|+..+.. + +.+..+||+||+|||||++|+++|+.+++.-
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~----------~---rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQ----------Q---RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh----------C---CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 5899999999999999988763 1 2335579999999999999999999997641
Q ss_pred -----------EEeeccccchhccCccHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 999 -----------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 999 -----------i~I~~seL~s~~~Ge~e~~v~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
+.++..+ ...-..++.+...+.. ....|+||||+|.|- ...++.|+.
T Consensus 80 ~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAqNALLK 141 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSFNALLK 141 (944)
T ss_pred HHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHHHHHHH
Confidence 1111110 0112335555544432 235799999999882 344555666
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
.|+.. +..+.+|++|+.+..|.+.+++|+ .++.|..++.++..++|+.++..+++. .+..+..|++.+.| +.+
T Consensus 142 tLEEP----P~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R 215 (944)
T PRK14949 142 TLEEP----PEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMR 215 (944)
T ss_pred HHhcc----CCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55542 456777777888888999999999 889999999999999999999887655 33457888888888 445
Q ss_pred HHHHHH
Q 000823 1143 DLKVIF 1148 (1267)
Q Consensus 1143 DL~~Lv 1148 (1267)
++-.++
T Consensus 216 ~ALnLL 221 (944)
T PRK14949 216 DALSLT 221 (944)
T ss_pred HHHHHH
Confidence 544444
No 104
>PLN03025 replication factor C subunit; Provisional
Probab=99.47 E-value=1.2e-12 Score=151.05 Aligned_cols=181 Identities=22% Similarity=0.262 Sum_probs=125.5
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CceEEeecccc
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSI 1006 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg-----~~fi~I~~seL 1006 (1267)
.+++|+.|.+++.+.|+.++.. . ...++||+||||||||++|+++|+++. ..++.++.++.
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARD----------G----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 5899999999999999887652 1 123799999999999999999999982 24666666543
Q ss_pred chhccCccHHHHHHHHHH-HHh------cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEE
Q 000823 1007 TSKWFGEGEKYVKAVFSL-ASK------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1079 (1267)
Q Consensus 1007 ~s~~~Ge~e~~v~~lF~~-A~k------~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVI 1079 (1267)
.+ ...++..... +.. ..+.||+|||+|.|. ...+.++ +..++.. .....+|
T Consensus 76 ~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----~~aq~aL-------~~~lE~~----~~~t~~i 133 (319)
T PLN03025 76 RG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----SGAQQAL-------RRTMEIY----SNTTRFA 133 (319)
T ss_pred cc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----HHHHHHH-------HHHHhcc----cCCceEE
Confidence 22 1123333221 111 235799999999883 1222222 2223221 2234566
Q ss_pred EecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHHHHHHHHhhhhh
Q 000823 1080 AATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKVIFLSHSL 1153 (1267)
Q Consensus 1080 aTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~DL~~Lv~~a~l 1153 (1267)
.++|....+.+++++|+ ..+.|+.|+.++..++++.+++++++. .+..+..|+....| |++.++...+.
T Consensus 134 l~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~Lq~ 203 (319)
T PLN03025 134 LACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNNLQA 203 (319)
T ss_pred EEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHH
Confidence 77888888999999998 689999999999999999999988765 34456777776655 67766665553
No 105
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.47 E-value=8.3e-13 Score=159.23 Aligned_cols=168 Identities=20% Similarity=0.354 Sum_probs=113.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCC
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 1045 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el-----g~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r 1045 (1267)
..++||||+|+|||+|++++++++ +..++++++.++...+..........-|....+ .+.+|+||||+.+.+++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 569999999999999999999988 567889999887665433322111122333333 46899999999885432
Q ss_pred CCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCC---CcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhh
Q 000823 1046 ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAK 1120 (1267)
Q Consensus 1046 ~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~vI~~~~Pd~eeR~eIL~~ll~k 1120 (1267)
. .+ .+|+..++.+.. ..+.+||+++..|.. +++.+++||. .++.+..|+.++|.+|++..+..
T Consensus 228 ~---~~-------~~l~~~~n~l~~--~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 228 R---TQ-------EEFFHTFNALHE--AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred H---HH-------HHHHHHHHHHHH--CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 1 11 222222222222 123456665555544 6789999995 47889999999999999999987
Q ss_pred CCCC-CcccHHHHHHHcCCCCHHHHHHHHhhhh
Q 000823 1121 EDLS-PDVDFDAIANMTDGYSGSDLKVIFLSHS 1152 (1267)
Q Consensus 1121 ~~l~-~dvdl~~LA~~TeGySg~DL~~Lv~~a~ 1152 (1267)
.++. ++..++.||....| +.++|..++....
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~ 327 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLI 327 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHH
Confidence 6654 44457888888887 6777775555443
No 106
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.46 E-value=4.8e-13 Score=171.97 Aligned_cols=183 Identities=22% Similarity=0.358 Sum_probs=134.2
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEEee
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1002 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el----------g~~fi~I~ 1002 (1267)
.+++++|.++..+.+.+.+.. +...+++|+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 566889998876666665542 223589999999999999999999987 78899999
Q ss_pred ccccc--hhccCccHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEE
Q 000823 1003 MSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1079 (1267)
Q Consensus 1003 ~seL~--s~~~Ge~e~~v~~lF~~A~k-~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVI 1079 (1267)
+..++ .++.|+.+..++.+|..+.+ ..+.|||||||+.|.+.....+...+. .++... + .++.+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~-~~lkp~---l------~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAG-NMLKPA---L------ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHH-HHhcch---h------hcCCCeEE
Confidence 88875 45778999999999988654 468999999999998765443333322 222211 1 24678999
Q ss_pred EecCCCC-----CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-----CcccHHHHHHHcCCCC
Q 000823 1080 AATNRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-----PDVDFDAIANMTDGYS 1140 (1267)
Q Consensus 1080 aTTN~p~-----~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-----~dvdl~~LA~~TeGyS 1140 (1267)
++|+..+ .+|+++.|||+ .|.++.|+.+++..|++.+....... .+..+...+.++..|.
T Consensus 312 gaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~ 381 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI 381 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc
Confidence 9998765 58999999995 68899999999999999887654322 2333444445555443
No 107
>PRK04195 replication factor C large subunit; Provisional
Probab=99.46 E-value=9.6e-13 Score=159.97 Aligned_cols=189 Identities=26% Similarity=0.371 Sum_probs=133.8
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhcc
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1011 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~ 1011 (1267)
.+++|++|.+.+++.|+.++.... + ..+.+++||+||||+|||++|+++|+++++.++.+++++...
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~-------~---g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~--- 77 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWL-------K---GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT--- 77 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHh-------c---CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc---
Confidence 579999999999999999986321 1 234578999999999999999999999999999999876432
Q ss_pred CccHHHHHHHHHHHHh------cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC
Q 000823 1012 GEGEKYVKAVFSLASK------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1267)
Q Consensus 1012 Ge~e~~v~~lF~~A~k------~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1267)
...+..+...+.. ..+.||+|||+|.|.+... .. ..+.++..++. .+..+|+++|.+
T Consensus 78 ---~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----~~----~~~aL~~~l~~------~~~~iIli~n~~ 140 (482)
T PRK04195 78 ---ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----RG----GARAILELIKK------AKQPIILTANDP 140 (482)
T ss_pred ---HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----hh----HHHHHHHHHHc------CCCCEEEeccCc
Confidence 1223333333222 2467999999998854211 11 12223333331 223466678888
Q ss_pred CCCcH-HHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHHHHHHHHhhhhhHH
Q 000823 1086 FDLDE-AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKVIFLSHSLIC 1155 (1267)
Q Consensus 1086 ~~Ld~-aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~ 1155 (1267)
..+.. .+++|+ ..|.|+.|+..++..+++.++..+++. .+..++.|+..+.| ||+.++...+.++
T Consensus 141 ~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~a 207 (482)
T PRK04195 141 YDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAIA 207 (482)
T ss_pred cccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHh
Confidence 88887 566666 789999999999999999999888765 34456777777655 7777776665533
No 108
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=3.6e-12 Score=153.73 Aligned_cols=181 Identities=20% Similarity=0.260 Sum_probs=134.6
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 996 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~--------------- 996 (1267)
.+|+|++|++.+.+.|+..+.. .+.+.++||+||+|+|||++|+++|+.+++
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 5899999999999999887752 234468999999999999999999997642
Q ss_pred ---------ceEEeeccccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 997 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 997 ---------~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
.++++++++- ..-..++.+.+.+... .+.|++|||+|.|. ....+.|+.
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLLK 138 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALLK 138 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHHH
Confidence 3455555421 1234566666666433 34699999999873 233455555
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
.++.. +..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++..+.++.++.++++. ++..+..|++.++| +.+
T Consensus 139 ~LEeP----p~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR 212 (491)
T PRK14964 139 TLEEP----APHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMR 212 (491)
T ss_pred HHhCC----CCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55553 345777777788888999999999 789999999999999999999988765 44557788888887 666
Q ss_pred HHHHHHh
Q 000823 1143 DLKVIFL 1149 (1267)
Q Consensus 1143 DL~~Lv~ 1149 (1267)
++..++.
T Consensus 213 ~alslLd 219 (491)
T PRK14964 213 NALFLLE 219 (491)
T ss_pred HHHHHHH
Confidence 6554443
No 109
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.4e-12 Score=161.25 Aligned_cols=180 Identities=23% Similarity=0.293 Sum_probs=131.1
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|+|++|++.+.+.|...+.. + +-+..+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~----------~---rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL----------G---RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 5899999999999999988763 1 223568999999999999999999999663
Q ss_pred ----------eEEeeccccchhccCccHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 998 ----------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
|+.++..+ ...-..++.+.+.+.. ....|+||||+|.|- ....|.|+.
T Consensus 80 ~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~NALLK 141 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLK 141 (647)
T ss_pred HHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHHHHHHH
Confidence 23333321 0112334555444432 245799999999882 234455555
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
.|+.- +..+.+|.+|+.+..|.+.+++|+ ..+.|..++.++..++|+.++..+++. .+..+..|+..+.| +.+
T Consensus 142 tLEEP----p~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R 215 (647)
T PRK07994 142 TLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMR 215 (647)
T ss_pred HHHcC----CCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55542 456777888888999999999998 899999999999999999999887765 34457788988888 455
Q ss_pred HHHHHH
Q 000823 1143 DLKVIF 1148 (1267)
Q Consensus 1143 DL~~Lv 1148 (1267)
+.-.++
T Consensus 216 ~Al~ll 221 (647)
T PRK07994 216 DALSLT 221 (647)
T ss_pred HHHHHH
Confidence 544444
No 110
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.45 E-value=1.2e-12 Score=155.90 Aligned_cols=167 Identities=22% Similarity=0.364 Sum_probs=111.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCC
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 1045 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el-----g~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r 1045 (1267)
..++||||+|+|||+|++++++++ +..++++++.++...+...........|....+ ...+|+||||+.+.++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCH
Confidence 569999999999999999999987 578899998877654332211101112222222 35799999999885432
Q ss_pred CCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC---CCcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhh
Q 000823 1046 ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAK 1120 (1267)
Q Consensus 1046 ~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd--~vI~~~~Pd~eeR~eIL~~ll~k 1120 (1267)
..++ +|+..++.+.. ....+||+++..|. .+++.+++||. ..+.++.|+.++|..|++..+..
T Consensus 216 ---~~~~-------~l~~~~n~~~~--~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 216 ---RTQE-------EFFHTFNALHE--NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred ---HHHH-------HHHHHHHHHHH--CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1112 22222222221 12345555555554 46688999995 46899999999999999999988
Q ss_pred CCCC-CcccHHHHHHHcCCCCHHHHHHHHhhh
Q 000823 1121 EDLS-PDVDFDAIANMTDGYSGSDLKVIFLSH 1151 (1267)
Q Consensus 1121 ~~l~-~dvdl~~LA~~TeGySg~DL~~Lv~~a 1151 (1267)
.++. ++..++.||....+ +.++|..++...
T Consensus 284 ~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l 314 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRS-NVRELEGALNRL 314 (405)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 7665 45557889988887 777777555533
No 111
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=2.9e-12 Score=158.11 Aligned_cols=183 Identities=21% Similarity=0.289 Sum_probs=134.4
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|+|++|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 5899999999999999998763 2334679999999999999999999998653
Q ss_pred ----------eEEeeccccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 998 ----------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
++.++.+. +.....++.+++.+... ...||||||+|.|- ....+.|+.
T Consensus 80 r~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALLK 141 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAMLK 141 (709)
T ss_pred HHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHHH
Confidence 12222211 12234566666654322 34799999999772 223445555
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
.|+.. ...+.+|.+|+.+..+.+.+++|| ..+.|..++.++..++|+.++.++++. .+..+..|++.+.| +.+
T Consensus 142 tLEEP----p~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slR 215 (709)
T PRK08691 142 TLEEP----PEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMR 215 (709)
T ss_pred HHHhC----CCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHH
Confidence 55542 356777888888999999999999 788999999999999999999998875 34457888888887 666
Q ss_pred HHHHHHhhh
Q 000823 1143 DLKVIFLSH 1151 (1267)
Q Consensus 1143 DL~~Lv~~a 1151 (1267)
++..++..+
T Consensus 216 dAlnLLDqa 224 (709)
T PRK08691 216 DALSLLDQA 224 (709)
T ss_pred HHHHHHHHH
Confidence 666666443
No 112
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.5e-14 Score=154.21 Aligned_cols=192 Identities=13% Similarity=0.179 Sum_probs=142.4
Q ss_pred eecccCCCCCCCCCCCCCCC--Ccccccc-cccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc---
Q 000823 632 GVRFDKPIPDGVDLGGQCEG--GHGFFCN-VTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--- 705 (1267)
Q Consensus 632 gv~Fd~~~~~~~~l~~~c~~--~~~ff~~-~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~--- 705 (1267)
||+.-+|||+|+||-+..-- ..+-|.+ .|.--..|++|| .-+.++.||+.+.. ...+|||||||+.+=+
T Consensus 213 gvllygppgtgktl~aravanrtdacfirvigselvqkyvge--garmvrelf~mart---kkaciiffdeidaiggarf 287 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE--GARMVRELFEMART---KKACIIFFDEIDAIGGARF 287 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhh--hHHHHHHHHHHhcc---cceEEEEeeccccccCccc
Confidence 78888999999996422111 1233445 466777899999 89999999999999 9999999999998443
Q ss_pred -CCcchhhHHHHHH----hcC-----CCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCC
Q 000823 706 -GNSDSYSTFKSRL----EKL-----PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGK 775 (1267)
Q Consensus 706 -g~~~~~~~lk~~L----~~l-----~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~ 775 (1267)
....-.|.++..+ .+| +|||-|+=+||++|.-||+ |-||||
T Consensus 288 ddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpa-------llrpgr---------------------- 338 (435)
T KOG0729|consen 288 DDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPA-------LLRPGR---------------------- 338 (435)
T ss_pred cCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHh-------hcCCcc----------------------
Confidence 1122234444333 333 6899999999999999999 899999
Q ss_pred CchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccchHHH
Q 000823 776 EIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESA 855 (1267)
Q Consensus 776 ~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aI 855 (1267)
++++|+|.|||-|+|..||++|... .....++...-.+--+.+-.||+|+++|+++-++...+
T Consensus 339 ------------ldrkvef~lpdlegrt~i~kihaks----msverdir~ellarlcpnstgaeirsvcteagmfaira- 401 (435)
T KOG0729|consen 339 ------------LDRKVEFGLPDLEGRTHIFKIHAKS----MSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRA- 401 (435)
T ss_pred ------------cccceeccCCcccccceeEEEeccc----cccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHH-
Confidence 5689999999999999999998765 34445555555566678899999999999865542111
Q ss_pred HHHHHHHHHhhhccCCCCCCcccccccchhHHHHHHHHHH
Q 000823 856 EKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQA 895 (1267)
Q Consensus 856 e~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~~lq~ 895 (1267)
.+...+..||..|+..+-.
T Consensus 402 ---------------------rrk~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 402 ---------------------RRKVATEKDFLDAVNKVVK 420 (435)
T ss_pred ---------------------HhhhhhHHHHHHHHHHHHH
Confidence 2444566778777765543
No 113
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.44 E-value=9.8e-13 Score=169.48 Aligned_cols=184 Identities=21% Similarity=0.358 Sum_probs=137.4
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEEee
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1002 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el----------g~~fi~I~ 1002 (1267)
.++.++|.++..+.+.+.+.. +...+++|+||||||||++|+++|..+ +.+++.++
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 566788998877777666542 223578999999999999999999886 67888898
Q ss_pred ccccc--hhccCccHHHHHHHHHHHHhc-CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEE
Q 000823 1003 MSSIT--SKWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1079 (1267)
Q Consensus 1003 ~seL~--s~~~Ge~e~~v~~lF~~A~k~-~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVI 1079 (1267)
+..++ ..|.|+.+..++.+|..+.+. .+.|||||||+.|.+.+...+... ..+.|...+ ....+.+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d----~~~~Lk~~l------~~g~i~~I 306 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMD----AGNMLKPAL------ARGELHCI 306 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhH----HHHHhchhh------hcCceEEE
Confidence 88775 467888999999999988764 589999999999986543322222 222222211 24678999
Q ss_pred EecCCC-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-----CcccHHHHHHHcCCCCH
Q 000823 1080 AATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-----PDVDFDAIANMTDGYSG 1141 (1267)
Q Consensus 1080 aTTN~p-----~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-----~dvdl~~LA~~TeGySg 1141 (1267)
++|+.. ..+|+++.||| ..|.++.|+.+++..||+.+....... .+..+..++.++.+|-.
T Consensus 307 gaTt~~e~r~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 999875 46899999999 568999999999999999887664432 33456677777777754
No 114
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.44 E-value=6.3e-12 Score=146.84 Aligned_cols=165 Identities=19% Similarity=0.263 Sum_probs=112.0
Q ss_pred hhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CceEEeeccc
Q 000823 935 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSS 1005 (1267)
Q Consensus 935 ~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg---------~~fi~I~~se 1005 (1267)
+++.|.++..+.|...+...+. + ..+.+++|+||||||||++++++++++. +.+++++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~-------~---~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR-------G---SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc-------C---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 3688999988888887753111 1 2235799999999999999999998762 5788888865
Q ss_pred cch----------hcc--Cc--------cHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhh
Q 000823 1006 ITS----------KWF--GE--------GEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1064 (1267)
Q Consensus 1006 L~s----------~~~--Ge--------~e~~v~~lF~~A~k-~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ 1064 (1267)
..+ ... |. .......++..... ..+.||+|||+|.|.+.. ..++..++..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~---------~~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD---------DDLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC---------cHHHHhHhcc
Confidence 321 111 11 12233445554432 346799999999996221 1234444433
Q ss_pred ccCCcccCCCcEEEEEecCCCC---CCcHHHHhccc-ccccCCCCCHHHHHHHHHHHHh
Q 000823 1065 WDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP-RRLMVNLPDAPNRAKILQVILA 1119 (1267)
Q Consensus 1065 ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd-~vI~~~~Pd~eeR~eIL~~ll~ 1119 (1267)
++.. ...+.++.+|+++|.+. .+++.+.+||. ..+.|++++.+++.+|++..+.
T Consensus 156 ~~~~-~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 156 RSNG-DLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred cccc-CCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 1111 11236789999999875 57888888985 6789999999999999999886
No 115
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.43 E-value=1.6e-12 Score=152.49 Aligned_cols=179 Identities=26% Similarity=0.375 Sum_probs=131.0
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch-hccC-c
Q 000823 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 1013 (1267)
Q Consensus 936 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s-~~~G-e 1013 (1267)
-++|+++.++.+...+.....+........-..+++++||+||||||||++|++||..++.+|+.+++..+.. .|.| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 3689999999998877754333222111111234589999999999999999999999999999999988863 6777 4
Q ss_pred cHHHHHHHHHHHH-------------------------------------------------------------------
Q 000823 1014 GEKYVKAVFSLAS------------------------------------------------------------------- 1026 (1267)
Q Consensus 1014 ~e~~v~~lF~~A~------------------------------------------------------------------- 1026 (1267)
.+..++.+|+.|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5666666665550
Q ss_pred ------------------------------------------------------------------------hcCCeEEE
Q 000823 1027 ------------------------------------------------------------------------KIAPSVIF 1034 (1267)
Q Consensus 1027 ------------------------------------------------------------------------k~~PsIIf 1034 (1267)
..+.+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01456999
Q ss_pred EccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcc------cCCCcEEEEEecC----CCCCCcHHHHhcccccccCCC
Q 000823 1035 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDTERILVLAATN----RPFDLDEAVIRRLPRRLMVNL 1104 (1267)
Q Consensus 1035 IDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~------~~~~~VlVIaTTN----~p~~Ld~aLlrRFd~vI~~~~ 1104 (1267)
|||||.++.+..+.+....-..+.+.||..++|-.. -+..+|++||+.. .|.+|-|+|.-||+.++.+..
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 332 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQA 332 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 999999986542211111223467778877776322 2347899998864 477888999999999999999
Q ss_pred CCHHHHHHHH
Q 000823 1105 PDAPNRAKIL 1114 (1267)
Q Consensus 1105 Pd~eeR~eIL 1114 (1267)
++.++...||
T Consensus 333 L~~edL~rIL 342 (441)
T TIGR00390 333 LTTDDFERIL 342 (441)
T ss_pred CCHHHHHHHh
Confidence 9999999998
No 116
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.43 E-value=4.4e-12 Score=151.44 Aligned_cols=167 Identities=25% Similarity=0.451 Sum_probs=117.1
Q ss_pred ccchhccccHHHHHH---HHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch
Q 000823 932 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~---L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s 1008 (1267)
.+++|++|.+++... |.+.+.. ....++||+||||||||++|+++|+.++..|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~--------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA--------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc--------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 478899999998665 7777642 122489999999999999999999999999999987542
Q ss_pred hccCccHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEec--
Q 000823 1009 KWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT-- 1082 (1267)
Q Consensus 1009 ~~~Ge~e~~v~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTT-- 1082 (1267)
....++.+++.+.. ....||||||||.+. ....+.|+..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~------------~~~q~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN------------KAQQDALLPHVED------GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC------------HHHHHHHHHHhhc------CcEEEEEeCCC
Confidence 12345555555532 246899999999873 1112233333332 345666554
Q ss_pred CCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhC--CC-C-CcccHHHHHHHcCC
Q 000823 1083 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE--DL-S-PDVDFDAIANMTDG 1138 (1267)
Q Consensus 1083 N~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~--~l-~-~dvdl~~LA~~TeG 1138 (1267)
|....+++++++|| .++.|..++.++...+++..+... ++ . .+..++.|++.+.|
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G 188 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG 188 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC
Confidence 33468999999999 789999999999999999988653 21 1 22335666776654
No 117
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=4.9e-12 Score=153.61 Aligned_cols=184 Identities=21% Similarity=0.274 Sum_probs=135.2
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|+|++|++.+.+.|+..+.. .+.+.++||+||+|||||++|+++|+.+++.
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 5899999999999999887652 2334689999999999999999999999652
Q ss_pred --------------eEEeeccccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHH
Q 000823 998 --------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKN 1059 (1267)
Q Consensus 998 --------------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~ 1059 (1267)
++.++..+ ......++.+++.+... ...|+||||+|.|. ....+
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~n 146 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAFN 146 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHHH
Confidence 22222211 12345567777766543 24699999999872 22344
Q ss_pred hhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCC
Q 000823 1060 EFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDG 1138 (1267)
Q Consensus 1060 eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeG 1138 (1267)
.|+..++. .+..+++|.+|+.++.+.+.+++|+ .++.|..++.++..++++.+++++++. .+..+..|+..++|
T Consensus 147 aLLk~LEe----pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G 221 (507)
T PRK06645 147 ALLKTLEE----PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG 221 (507)
T ss_pred HHHHHHhh----cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 45555543 2456777777788888999999999 789999999999999999999988865 33447889998887
Q ss_pred CCHHHHHHHHhhhh
Q 000823 1139 YSGSDLKVIFLSHS 1152 (1267)
Q Consensus 1139 ySg~DL~~Lv~~a~ 1152 (1267)
+.+++-.++..+.
T Consensus 222 -slR~al~~Ldkai 234 (507)
T PRK06645 222 -SARDAVSILDQAA 234 (507)
T ss_pred -CHHHHHHHHHHHH
Confidence 6666665655543
No 118
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=6.9e-12 Score=155.00 Aligned_cols=177 Identities=19% Similarity=0.264 Sum_probs=129.3
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|+|++|++.+.+.|+..+.. .+-+..+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 5899999999999999998863 1233568999999999999999999998652
Q ss_pred ---------------eEEeeccccchhccCccHHHHHHHHHHHHhcC----CeEEEEccchhhhcCCCCCchHHHHHHHH
Q 000823 998 ---------------FINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVIFVDEVDSMLGRRENPGEHEAMRKMK 1058 (1267)
Q Consensus 998 ---------------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~----PsIIfIDEID~L~~~r~~~~~~~~~~~il 1058 (1267)
++.++... ...-..++.+.+.+...+ ..|++|||+|.|. ....
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a~ 141 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTAF 141 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHHH
Confidence 22332221 112234566665544322 4699999999883 2234
Q ss_pred HhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcC
Q 000823 1059 NEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTD 1137 (1267)
Q Consensus 1059 ~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~Te 1137 (1267)
|.|+..++.. ...+.+|.+|+.+..+.+.+++|+ .++.|..++.++..+.++.++.++++. .+..+..|++.+.
T Consensus 142 NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~ 216 (618)
T PRK14951 142 NAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAAR 216 (618)
T ss_pred HHHHHhcccC----CCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5555555542 356677777778888888999999 889999999999999999999888776 3344788888888
Q ss_pred CCCHHHHH
Q 000823 1138 GYSGSDLK 1145 (1267)
Q Consensus 1138 GySg~DL~ 1145 (1267)
| +.+++.
T Consensus 217 G-slR~al 223 (618)
T PRK14951 217 G-SMRDAL 223 (618)
T ss_pred C-CHHHHH
Confidence 7 555555
No 119
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.42 E-value=5.3e-12 Score=140.92 Aligned_cols=190 Identities=23% Similarity=0.317 Sum_probs=131.6
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC------ceEEeeccc
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA------NFINISMSS 1005 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~------~fi~I~~se 1005 (1267)
.+|+|+.|++.+.+.|+..+.. +-..++|||||||||||+.|+++|+++.. .+...+.++
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD 98 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc
Confidence 5899999999999999998862 11248999999999999999999999965 234445554
Q ss_pred cchhccCc-cHHHHHHHHHHH-----HhcCC-eEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEE
Q 000823 1006 ITSKWFGE-GEKYVKAVFSLA-----SKIAP-SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 1078 (1267)
Q Consensus 1006 L~s~~~Ge-~e~~v~~lF~~A-----~k~~P-sIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlV 1078 (1267)
..+..++. .-+...++.... +-.+| .||+|||.|.|. ...+.++++++. .. ...+.+
T Consensus 99 erGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----sdaq~aLrr~mE-------~~----s~~trF 162 (346)
T KOG0989|consen 99 ERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----SDAQAALRRTME-------DF----SRTTRF 162 (346)
T ss_pred cccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh-----HHHHHHHHHHHh-------cc----ccceEE
Confidence 43332111 111111111111 11122 699999999884 223344444443 32 456888
Q ss_pred EEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCc-ccHHHHHHHcCCCCHHHHHHHHhhhhhHHH
Q 000823 1079 LAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD-VDFDAIANMTDGYSGSDLKVIFLSHSLICN 1156 (1267)
Q Consensus 1079 IaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~d-vdl~~LA~~TeGySg~DL~~Lv~~a~l~~~ 1156 (1267)
|..||..+.|...+.+|+ ..+.|+....+.....|+.+..++++.-+ ..++.|+...+| ||+.++...+.++.
T Consensus 163 iLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G----dLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 163 ILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG----DLRRAITTLQSLSL 236 (346)
T ss_pred EEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHhhc
Confidence 899999999999999999 67889999999999999999999988733 346777776665 77766665544443
No 120
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=4.9e-12 Score=160.90 Aligned_cols=180 Identities=19% Similarity=0.188 Sum_probs=127.6
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|++|+|++.+++.|+..+.. .+..+.+||+||+|||||++|++||+.+.+.
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 5899999999999999998862 2233569999999999999999999999642
Q ss_pred ------------eEEeeccccchhccCccHHHHHHHHHHH----HhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhh
Q 000823 998 ------------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 1061 (1267)
Q Consensus 998 ------------fi~I~~seL~s~~~Ge~e~~v~~lF~~A----~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eL 1061 (1267)
|+.++.... ..-..++.+.+.+ ......|+||||+|.|- ....|.|
T Consensus 79 ~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------~~a~NaL 140 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT------------PQGFNAL 140 (824)
T ss_pred HHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC------------HHHHHHH
Confidence 233332111 0122333333222 23456799999999883 2344555
Q ss_pred hhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCC-cccHHHHHHHcCCCC
Q 000823 1062 MVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMTDGYS 1140 (1267)
Q Consensus 1062 L~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~-dvdl~~LA~~TeGyS 1140 (1267)
+..|+.. ...+++|++|+.++.|-+.|++|+ .++.|..++.++..++|+.++.++++.. +..+..|++...| +
T Consensus 141 LK~LEEp----P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-d 214 (824)
T PRK07764 141 LKIVEEP----PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-S 214 (824)
T ss_pred HHHHhCC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 5555553 356777777888888999999999 7899999999999999999998887753 3345677777776 5
Q ss_pred HHHHHHHH
Q 000823 1141 GSDLKVIF 1148 (1267)
Q Consensus 1141 g~DL~~Lv 1148 (1267)
.+++..++
T Consensus 215 lR~Al~eL 222 (824)
T PRK07764 215 VRDSLSVL 222 (824)
T ss_pred HHHHHHHH
Confidence 54444333
No 121
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.7e-13 Score=147.05 Aligned_cols=192 Identities=17% Similarity=0.252 Sum_probs=148.8
Q ss_pred eecccCCCCCCCC-CCCCCCCC--cccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc---
Q 000823 632 GVRFDKPIPDGVD-LGGQCEGG--HGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--- 705 (1267)
Q Consensus 632 gv~Fd~~~~~~~~-l~~~c~~~--~~ff~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~--- 705 (1267)
||+.-+|||||+| +|--|-.- .+|..=+|-.-..-+.|+ .-.+++--|.++++ ..|.||||||++.+=.
T Consensus 207 GvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGd--GAkLVRDAFaLAKE---kaP~IIFIDElDAIGtKRf 281 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGD--GAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRF 281 (424)
T ss_pred ceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcc--hHHHHHHHHHHhhc---cCCeEEEEechhhhccccc
Confidence 7888899999999 45555433 667666665555555666 67789999999999 9999999999998443
Q ss_pred -----CCcchhhHHHHHHhcCCC-----cEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCC
Q 000823 706 -----GNSDSYSTFKSRLEKLPD-----KVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGK 775 (1267)
Q Consensus 706 -----g~~~~~~~lk~~L~~l~g-----~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~ 775 (1267)
|-.+.-......|.+|.| .|-||.+||+.|--||+ |-|-||
T Consensus 282 DSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPA-------LlRSGR---------------------- 332 (424)
T KOG0652|consen 282 DSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPA-------LLRSGR---------------------- 332 (424)
T ss_pred cccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHH-------Hhhccc----------------------
Confidence 444554555555566644 89999999999977777 666666
Q ss_pred CchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccchHHH
Q 000823 776 EIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESA 855 (1267)
Q Consensus 776 ~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~aI 855 (1267)
++++|+|++|++++|.+|+++|-.+ .....+++..+.+-.+-++.||-+.++|.++-++
T Consensus 333 ------------LDRKIEfP~Pne~aRarIlQIHsRK----Mnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMi----- 391 (424)
T KOG0652|consen 333 ------------LDRKIEFPHPNEEARARILQIHSRK----MNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMI----- 391 (424)
T ss_pred ------------ccccccCCCCChHHHHHHHHHhhhh----cCCCCCCCHHHHhhcccccCchhheeeehhhhHH-----
Confidence 6789999999999999999999877 5677889999988889999999999999983331
Q ss_pred HHHHHHHHHhhhccCCCCCCcccccccchhHHHHHHHHHH
Q 000823 856 EKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQA 895 (1267)
Q Consensus 856 e~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~~lq~ 895 (1267)
|+ +...-.|+.+||..++..+|.
T Consensus 392 ------AL-----------Rr~atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 392 ------AL-----------RRGATEVTHEDFMEGILEVQA 414 (424)
T ss_pred ------HH-----------hcccccccHHHHHHHHHHHHH
Confidence 12 223446788999998876664
No 122
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.41 E-value=2.6e-12 Score=163.28 Aligned_cols=171 Identities=19% Similarity=0.326 Sum_probs=119.2
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccc--------
Q 000823 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 1007 (1267)
Q Consensus 936 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~-------- 1007 (1267)
+..|++++|+.+.+++...... . ......++|+||||+|||++++.+|..++.+|+++++....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~--~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------N--KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------c--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 5889999999999887632211 1 11224699999999999999999999999999998876532
Q ss_pred -hhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHh-----hhhhccCCcccCCCcEEEEEe
Q 000823 1008 -SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDTERILVLAA 1081 (1267)
Q Consensus 1008 -s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~e-----LL~~ldgl~~~~~~~VlVIaT 1081 (1267)
..|.|..++.+.+.+..+....| ||||||||.+..... .....++..++.. |....-.+ .-+-.++++|+|
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~-g~~~~aLlevld~~~~~~~~d~~~~~-~~dls~v~~i~T 471 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR-GDPASALLEVLDPEQNVAFSDHYLEV-DYDLSDVMFVAT 471 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC-CCHHHHHHHHhccccEEEEecccccc-cccCCceEEEEc
Confidence 23667777777777766554444 899999999854321 1112222222211 00000001 113478999999
Q ss_pred cCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHh
Q 000823 1082 TNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILA 1119 (1267)
Q Consensus 1082 TN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~ 1119 (1267)
+|.. .|+++|++|| .+|.+..++.++..+|++.++-
T Consensus 472 aN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 472 SNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhh
Confidence 9987 5999999999 6899999999999999998884
No 123
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=6.3e-12 Score=154.01 Aligned_cols=177 Identities=21% Similarity=0.286 Sum_probs=129.0
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|+|++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 5899999999999999988763 2334568999999999999999999999652
Q ss_pred ----------eEEeeccccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 998 ----------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
++.++.+. ...-..++.+.+.+... ...|+||||+|.|. ....|.|+.
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLLK 141 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAMLK 141 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHHH
Confidence 22222211 11234466666665432 24699999999873 233455666
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
.++.. +..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++..+.+..++.++++. .+..+..|++.+.| +.+
T Consensus 142 ~LEep----p~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr 215 (527)
T PRK14969 142 TLEEP----PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMR 215 (527)
T ss_pred HHhCC----CCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 56553 356777777777888888899999 899999999999999999999888765 33446778888877 455
Q ss_pred HHH
Q 000823 1143 DLK 1145 (1267)
Q Consensus 1143 DL~ 1145 (1267)
++.
T Consensus 216 ~al 218 (527)
T PRK14969 216 DAL 218 (527)
T ss_pred HHH
Confidence 554
No 124
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=1.1e-11 Score=152.96 Aligned_cols=177 Identities=24% Similarity=0.346 Sum_probs=130.9
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 996 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~--------------- 996 (1267)
.+|++++|++.+.+.|+..+.. .+.++.+||+||+|||||++|+.+|+.+.+
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 5899999999999999998863 223467999999999999999999998853
Q ss_pred ---------ceEEeeccccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 997 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 997 ---------~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
+++.++++. +..-..++.+.+.+... ...|++|||+|.|. ....+.|+.
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLLK 141 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALLK 141 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHHH
Confidence 344444321 12334566776665532 35699999999883 223455555
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
.++.. +..+++|.+|+.++.+.+.+++|+ ..+.|..|+.++...+++.++.+.++. .+..+..|+..+.| +.+
T Consensus 142 tLEep----p~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R 215 (559)
T PRK05563 142 TLEEP----PAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMR 215 (559)
T ss_pred HhcCC----CCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55543 346677777778899999999999 678999999999999999999888765 33446778888877 555
Q ss_pred HHH
Q 000823 1143 DLK 1145 (1267)
Q Consensus 1143 DL~ 1145 (1267)
+..
T Consensus 216 ~al 218 (559)
T PRK05563 216 DAL 218 (559)
T ss_pred HHH
Confidence 554
No 125
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=9.2e-12 Score=153.10 Aligned_cols=171 Identities=20% Similarity=0.276 Sum_probs=123.8
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|+||+|++.+++.|...+.. . +-...+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~----------~---ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQE----------N---RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHc----------C---CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 5899999999999999998863 1 223589999999999999999999999653
Q ss_pred ----------eEEeeccccchhccCccHHHHHHHHHHHH----hcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 998 ----------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
++.++...- ..-..++.+.+.+. .....||||||+|.|- ....+.|+.
T Consensus 80 ~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLLk 141 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALLK 141 (624)
T ss_pred HHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHHH
Confidence 333433210 11123343333222 2235799999999883 233455555
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCC
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDG 1138 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeG 1138 (1267)
.++.. ..++++|++|+.+..+.+.+++|+ .+|.|..++.++..++|+.++.++++. .+..++.|++.+.|
T Consensus 142 ~LEEP----~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 142 TLEEP----PARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred Hhhcc----CCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 55542 346788888888888889999999 688999999999999999999887754 34457778888776
No 126
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.40 E-value=1.4e-11 Score=145.47 Aligned_cols=184 Identities=18% Similarity=0.257 Sum_probs=119.9
Q ss_pred chhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceEEeeccccc-
Q 000823 934 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSIT- 1007 (1267)
Q Consensus 934 ~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el-----g~~fi~I~~seL~- 1007 (1267)
.+.+.|-++..++|...+...+. + ..+.+++|+||||+|||++++.+++++ ++.+++++|....
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~-------~---~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR-------G---SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC-------C---CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 34677888888888777753111 1 123579999999999999999999887 5778899886431
Q ss_pred ---------hhccC--------ccHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCc
Q 000823 1008 ---------SKWFG--------EGEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1069 (1267)
Q Consensus 1008 ---------s~~~G--------e~e~~v~~lF~~A~k-~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~ 1069 (1267)
....+ .....+..++....+ ..+.||+|||+|.+.... . ..++..++..++...
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-~-------~~~l~~l~~~~~~~~ 170 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-G-------NDVLYSLLRAHEEYP 170 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-C-------chHHHHHHHhhhccC
Confidence 11111 112233444443333 346799999999986211 1 133444544444332
Q ss_pred ccCCCcEEEEEecCCC---CCCcHHHHhccc-ccccCCCCCHHHHHHHHHHHHhhC---CCCCcccHHHHHHHcCC
Q 000823 1070 TKDTERILVLAATNRP---FDLDEAVIRRLP-RRLMVNLPDAPNRAKILQVILAKE---DLSPDVDFDAIANMTDG 1138 (1267)
Q Consensus 1070 ~~~~~~VlVIaTTN~p---~~Ld~aLlrRFd-~vI~~~~Pd~eeR~eIL~~ll~k~---~l~~dvdl~~LA~~TeG 1138 (1267)
..++.+|+++|.. +.+++.+.+||. ..|.|+.++.++..+|++..+... ....+..++.+++.+.+
T Consensus 171 ---~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~ 243 (394)
T PRK00411 171 ---GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAR 243 (394)
T ss_pred ---CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHH
Confidence 2378888888875 357788888874 578999999999999999988542 11233345667776644
No 127
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.40 E-value=1.7e-12 Score=152.36 Aligned_cols=179 Identities=23% Similarity=0.369 Sum_probs=130.6
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch-hccC-c
Q 000823 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 1013 (1267)
Q Consensus 936 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s-~~~G-e 1013 (1267)
.++|++++++.+...+....++...........++.++||+||||+|||++|++||..++.+|+.+++.++.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3789999999998888643332211111111123479999999999999999999999999999999998875 6888 4
Q ss_pred cHHHHHHHHHHHH-------------------------------------------------------------------
Q 000823 1014 GEKYVKAVFSLAS------------------------------------------------------------------- 1026 (1267)
Q Consensus 1014 ~e~~v~~lF~~A~------------------------------------------------------------------- 1026 (1267)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4666666666661
Q ss_pred ---------------------------------------------------------------------h--cCCeEEEE
Q 000823 1027 ---------------------------------------------------------------------K--IAPSVIFV 1035 (1267)
Q Consensus 1027 ---------------------------------------------------------------------k--~~PsIIfI 1035 (1267)
. .+.+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 13469999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcc------cCCCcEEEEEecC----CCCCCcHHHHhcccccccCCCC
Q 000823 1036 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDTERILVLAATN----RPFDLDEAVIRRLPRRLMVNLP 1105 (1267)
Q Consensus 1036 DEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~------~~~~~VlVIaTTN----~p~~Ld~aLlrRFd~vI~~~~P 1105 (1267)
||||.++....+.+....-..+.+.||..++|-.. -+..+|++||+.. .|.+|-|+|.-||+.++.+..+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 335 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDAL 335 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 99999986643222111223467778887777322 1347899998763 4678889999999999999999
Q ss_pred CHHHHHHHH
Q 000823 1106 DAPNRAKIL 1114 (1267)
Q Consensus 1106 d~eeR~eIL 1114 (1267)
+.++...||
T Consensus 336 ~~~dL~~IL 344 (443)
T PRK05201 336 TEEDFVRIL 344 (443)
T ss_pred CHHHHHHHh
Confidence 999999998
No 128
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=6.3e-12 Score=148.76 Aligned_cols=188 Identities=16% Similarity=0.253 Sum_probs=126.2
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceE-------------
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI------------- 999 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi------------- 999 (1267)
.|++|+|++.+++.|++.+......+..+ + .+.++.+||+||+|+|||++|+++|+.+.+.-.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---G-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 58899999999999999998643322111 1 123578999999999999999999998855310
Q ss_pred --Eeeccccc--h-hccCccHHHHHHHHHHHHhcC----CeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcc
Q 000823 1000 --NISMSSIT--S-KWFGEGEKYVKAVFSLASKIA----PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 1070 (1267)
Q Consensus 1000 --~I~~seL~--s-~~~Ge~e~~v~~lF~~A~k~~----PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~ 1070 (1267)
.-+.+++. . .-....-..++.+++.+...+ ..|+||||+|.|. ....|.|+..|+..
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~------------~~aanaLLk~LEep-- 144 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT------------ERAANALLKAVEEP-- 144 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC------------HHHHHHHHHHhhcC--
Confidence 00011110 0 000112345778887776533 4699999999883 12235566556543
Q ss_pred cCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHH
Q 000823 1071 KDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLK 1145 (1267)
Q Consensus 1071 ~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~ 1145 (1267)
+.++++|.+|+.++.+.+.+++|+ ..+.|+.|+.++..++|.. ..++. ......++..+.|..+..+.
T Consensus 145 --~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~---~~~~~-~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 145 --PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVR---RDGVD-PETARRAARASQGHIGRARR 212 (394)
T ss_pred --CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHH---hcCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 234555555555899999999999 7999999999998877763 22333 34467889999998877766
No 129
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=8.5e-12 Score=149.93 Aligned_cols=162 Identities=17% Similarity=0.275 Sum_probs=106.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCC
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE 1046 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~ 1046 (1267)
.++++||||+|+|||+|++++++++ +..++++++.++...+.......-...|....+ ...||+||||+.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh-
Confidence 3579999999999999999999987 788999998776544322211111123443333 45799999999885332
Q ss_pred CCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC---CCCcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhC
Q 000823 1047 NPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP---FDLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKE 1121 (1267)
Q Consensus 1047 ~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p---~~Ld~aLlrRFd--~vI~~~~Pd~eeR~eIL~~ll~k~ 1121 (1267)
..++....+++.+.. ..+.+|++++..| ..+++.+++||. ..+.+..|+.++|..||+..+...
T Consensus 219 --~~qeelf~l~N~l~~---------~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 219 --ATQEEFFHTFNSLHT---------EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred --hhHHHHHHHHHHHHH---------CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence 122333344443321 1234555555545 356789999995 678889999999999999999887
Q ss_pred CCC-CcccHHHHHHHcCCCCHHHHH
Q 000823 1122 DLS-PDVDFDAIANMTDGYSGSDLK 1145 (1267)
Q Consensus 1122 ~l~-~dvdl~~LA~~TeGySg~DL~ 1145 (1267)
++. ++..++.|+....+ ..+.|.
T Consensus 288 ~~~l~~evl~~la~~~~~-dir~L~ 311 (445)
T PRK12422 288 SIRIEETALDFLIEALSS-NVKSLL 311 (445)
T ss_pred CCCCCHHHHHHHHHhcCC-CHHHHH
Confidence 654 33345667776664 334444
No 130
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.38 E-value=2.1e-11 Score=141.88 Aligned_cols=177 Identities=25% Similarity=0.367 Sum_probs=127.0
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|++++|.+.+++.|.+.+.. .+.++.+||+||||+|||++|+++|+.+.+.
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~-------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN-------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 6899999999999999988752 1234679999999999999999999988432
Q ss_pred ----------eEEeeccccchhccCccHHHHHHHHHHHHhcC----CeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 998 ----------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~----PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
++.++... ......++.+++.+...+ ..||+|||+|.+. ....+.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll~ 139 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALLK 139 (355)
T ss_pred HHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHHH
Confidence 23333221 112334667777665432 3699999999772 123445555
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
.++.. +..+++|.+|+.+..+.+.+++|+ ..+.|+.|+.++..++++.++.+.++. .+..+..|+..+.| +.+
T Consensus 140 ~le~~----~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~ 213 (355)
T TIGR02397 140 TLEEP----PEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLR 213 (355)
T ss_pred HHhCC----ccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChH
Confidence 55442 345777777888888889999999 678999999999999999999887754 33446677777766 444
Q ss_pred HHH
Q 000823 1143 DLK 1145 (1267)
Q Consensus 1143 DL~ 1145 (1267)
.+.
T Consensus 214 ~a~ 216 (355)
T TIGR02397 214 DAL 216 (355)
T ss_pred HHH
Confidence 444
No 131
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=2.4e-12 Score=154.72 Aligned_cols=167 Identities=17% Similarity=0.299 Sum_probs=111.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCceEEeeccccchhccCccH-HHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGE-KYVKAVFSLASKIAPSVIFVDEVDSMLGR 1044 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el-----g~~fi~I~~seL~s~~~Ge~e-~~v~~lF~~A~k~~PsIIfIDEID~L~~~ 1044 (1267)
.+++||||+|+|||+|++++++++ +..++++++.+++..+..... ..+. -|....+..+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999986 467889998887655432211 1111 233333446789999999988643
Q ss_pred CCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCC---CcHHHHhccc--ccccCCCCCHHHHHHHHHHHHh
Q 000823 1045 RENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILA 1119 (1267)
Q Consensus 1045 r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~vI~~~~Pd~eeR~eIL~~ll~ 1119 (1267)
.. .+..+..+++.+. . ....+||++...|.. +.+.+++||. .++.+..|+.+.|.+|++..+.
T Consensus 210 ~~---~q~elf~~~n~l~-------~--~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 210 TG---VQTELFHTFNELH-------D--SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred HH---HHHHHHHHHHHHH-------H--cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 21 1122222333332 1 233455655566654 5578888984 4678899999999999999998
Q ss_pred hCCCC-CcccHHHHHHHcCCCCHHHHHHHHhhh
Q 000823 1120 KEDLS-PDVDFDAIANMTDGYSGSDLKVIFLSH 1151 (1267)
Q Consensus 1120 k~~l~-~dvdl~~LA~~TeGySg~DL~~Lv~~a 1151 (1267)
..++. ++..++.||....| +.++|..++...
T Consensus 278 ~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 278 IEHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred hcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 76554 44457888888876 667777555543
No 132
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.38 E-value=1.4e-11 Score=141.95 Aligned_cols=185 Identities=21% Similarity=0.287 Sum_probs=121.7
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CceEEeecccc
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSI 1006 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg-----~~fi~I~~seL 1006 (1267)
.+|+++.|.+.+++.|..++.. . ...++||+||||||||++|+++++++. .+++.+++.++
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDS----------P----NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhC----------C----CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 5789999999999999887752 1 123799999999999999999999883 35778888765
Q ss_pred chhc-------------cCc-------cHHHHHHHHHHHHh-----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhh
Q 000823 1007 TSKW-------------FGE-------GEKYVKAVFSLASK-----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 1061 (1267)
Q Consensus 1007 ~s~~-------------~Ge-------~e~~v~~lF~~A~k-----~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eL 1061 (1267)
.... .+. ....++.+...... ..+.+|+|||+|.+.. ...+.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~------------~~~~~L 145 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE------------DAQQAL 145 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH------------HHHHHH
Confidence 3221 010 01223333322222 2346999999997721 112223
Q ss_pred hhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCC
Q 000823 1062 MVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 1140 (1267)
Q Consensus 1062 L~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGyS 1140 (1267)
...++... ....+|.+++.+..+.+.+.+|+ ..+.|..|+.+++.++++.++.+.++. .+..++.|+..+.
T Consensus 146 ~~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~--- 217 (337)
T PRK12402 146 RRIMEQYS----RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG--- 217 (337)
T ss_pred HHHHHhcc----CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC---
Confidence 33333321 22345556666667778888898 678999999999999999999887765 3445667777664
Q ss_pred HHHHHHHHhhh
Q 000823 1141 GSDLKVIFLSH 1151 (1267)
Q Consensus 1141 g~DL~~Lv~~a 1151 (1267)
+|++.++...
T Consensus 218 -gdlr~l~~~l 227 (337)
T PRK12402 218 -GDLRKAILTL 227 (337)
T ss_pred -CCHHHHHHHH
Confidence 4566444433
No 133
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.38 E-value=6.6e-12 Score=148.80 Aligned_cols=148 Identities=23% Similarity=0.364 Sum_probs=95.3
Q ss_pred ccccHHHHHHHHHHHhCccCchhhh-hc---CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch-hcc
Q 000823 937 IGALENVKDTLKELVMLPLQRPELF-CK---GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWF 1011 (1267)
Q Consensus 937 I~Gle~vk~~L~e~V~~pl~~~e~f-~~---~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s-~~~ 1011 (1267)
++|++++++.+...+....++.... .. .+......++||+||||||||++|+++|..++.+|..+++..+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 6899999999987774332221110 00 011122468999999999999999999999999999999988753 577
Q ss_pred Ccc-HHHHHHHHHHH----HhcCCeEEEEccchhhhcCCCCCchHH--HHHHHHHhhhhhccCCcc---------cCCCc
Q 000823 1012 GEG-EKYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPGEHE--AMRKMKNEFMVNWDGLRT---------KDTER 1075 (1267)
Q Consensus 1012 Ge~-e~~v~~lF~~A----~k~~PsIIfIDEID~L~~~r~~~~~~~--~~~~il~eLL~~ldgl~~---------~~~~~ 1075 (1267)
|.. +..+..++..+ .+..++||||||||.+..++.++.... ....+.+.|+..|+|... .+..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 775 34444444322 344678999999999976543321110 012456666666654321 12356
Q ss_pred EEEEEecCC
Q 000823 1076 ILVLAATNR 1084 (1267)
Q Consensus 1076 VlVIaTTN~ 1084 (1267)
.++|.|+|-
T Consensus 239 ~i~i~TsNi 247 (413)
T TIGR00382 239 FIQIDTSNI 247 (413)
T ss_pred eEEEEcCCc
Confidence 788888876
No 134
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.2e-11 Score=152.28 Aligned_cols=181 Identities=18% Similarity=0.214 Sum_probs=128.6
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|+|++|++.+.+.|+..+.. .+.++.+||+||+|||||++|+++|+.+.+.
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 5899999999999999998863 1233558999999999999999999988642
Q ss_pred ------------eEEeeccccchhccCccHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhh
Q 000823 998 ------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 1061 (1267)
Q Consensus 998 ------------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eL 1061 (1267)
++.++.+.. ..-..++.+.+.+.. ....|+||||+|.|- ....+.|
T Consensus 77 ~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A~NAL 138 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAGFNAL 138 (584)
T ss_pred HHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHHHHHH
Confidence 223332211 012334444443322 235699999999883 2245556
Q ss_pred hhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCC
Q 000823 1062 MVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 1140 (1267)
Q Consensus 1062 L~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGyS 1140 (1267)
+..|+.. +..+++|.+|+.+..+.+.+++|+ .++.|..++.++..+.++.++.++++. .+..+..|++.+.| +
T Consensus 139 LK~LEEp----p~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-d 212 (584)
T PRK14952 139 LKIVEEP----PEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-S 212 (584)
T ss_pred HHHHhcC----CCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 6555543 456788888888899999999997 789999999999999999999988765 33445667777766 5
Q ss_pred HHHHHHHHh
Q 000823 1141 GSDLKVIFL 1149 (1267)
Q Consensus 1141 g~DL~~Lv~ 1149 (1267)
.+++..++.
T Consensus 213 lR~aln~Ld 221 (584)
T PRK14952 213 PRDTLSVLD 221 (584)
T ss_pred HHHHHHHHH
Confidence 554444443
No 135
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.37 E-value=1.2e-11 Score=136.06 Aligned_cols=187 Identities=23% Similarity=0.352 Sum_probs=138.1
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccc
Q 000823 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1007 (1267)
Q Consensus 931 ~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~ 1007 (1267)
.+.++++.|++..++.|.+.... |.++ .|..++||+|++|||||++++++.+++ |..+|.|...++.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~G---~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQG---LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHcC---CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 47899999999999999887753 3333 477899999999999999999999987 7888888876653
Q ss_pred hhccCccHHHHHHHHHHHHhc-CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000823 1008 SKWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1267)
Q Consensus 1008 s~~~Ge~e~~v~~lF~~A~k~-~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1267)
. +..+++..+.. .+-|||+|++- + ...+ .-...|...|+|.-...+.+|+|.+|+|+.+
T Consensus 93 ~---------l~~l~~~l~~~~~kFIlf~DDLs--F----e~~d-----~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 D---------LPELLDLLRDRPYKFILFCDDLS--F----EEGD-----TEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred c---------HHHHHHHHhcCCCCEEEEecCCC--C----CCCc-----HHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 2 44566655533 35799999975 2 1121 1234566667877766789999999999842
Q ss_pred CC---------------cH--------HHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCc-ccH----HHHHHHcCC
Q 000823 1087 DL---------------DE--------AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD-VDF----DAIANMTDG 1138 (1267)
Q Consensus 1087 ~L---------------d~--------aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~d-vdl----~~LA~~TeG 1138 (1267)
.+ .+ .|-.||...|.|..|+.++-.+|++.++.+.++.-+ .++ ...|..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 22 11 344599999999999999999999999998877643 222 334455567
Q ss_pred CCHHHHHHH
Q 000823 1139 YSGSDLKVI 1147 (1267)
Q Consensus 1139 ySg~DL~~L 1147 (1267)
.||+--++.
T Consensus 233 RSGRtA~QF 241 (249)
T PF05673_consen 233 RSGRTARQF 241 (249)
T ss_pred CCHHHHHHH
Confidence 888876633
No 136
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2e-12 Score=143.98 Aligned_cols=130 Identities=18% Similarity=0.326 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc--------CCcchhhHHHHHHhcCC-----CcEEEEeecccCCCccc
Q 000823 673 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFKSRLEKLP-----DKVIVIGSHTHTDNRKE 739 (1267)
Q Consensus 673 ~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~--------g~~~~~~~lk~~L~~l~-----g~VvvIGst~~~d~~~~ 739 (1267)
..++|+..|.-+.. ++|+||||||||.+.+ .+.++-..|-+.|+.+. ++|-+|.++|++|.-++
T Consensus 210 saRlIRemf~yA~~---~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 210 SARLIRDMFRYARE---VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred HHHHHHHHHHHHhh---hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 45699999999998 9999999999998665 23344444444444443 59999999999998888
Q ss_pred cCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhh
Q 000823 740 KSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKM 819 (1267)
Q Consensus 740 ~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~ 819 (1267)
+ |-|||| ++++++|++|.+-+|+.|+|.|-.. +..
T Consensus 287 a-------LlRpGR----------------------------------ldrk~~iPlpne~~r~~I~Kih~~~----i~~ 321 (388)
T KOG0651|consen 287 A-------LLRPGR----------------------------------LDRKVEIPLPNEQARLGILKIHVQP----IDF 321 (388)
T ss_pred h-------hcCCcc----------------------------------ccceeccCCcchhhceeeEeecccc----ccc
Confidence 8 889999 6679999999999999999988766 444
Q ss_pred ccCchhHHHHhhhcCCCCccccceecccccc
Q 000823 820 KGNLNHLRTVLGRSGLECEGLETLCIRDQSL 850 (1267)
Q Consensus 820 ~~Nv~~l~~vL~~~glscaDL~~L~~~d~~l 850 (1267)
+--++....+--.-++.|+||+..|+++-.+
T Consensus 322 ~Geid~eaivK~~d~f~gad~rn~~tEag~F 352 (388)
T KOG0651|consen 322 HGEIDDEAILKLVDGFNGADLRNVCTEAGMF 352 (388)
T ss_pred cccccHHHHHHHHhccChHHHhhhccccccc
Confidence 4444444444445689999999999996554
No 137
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.3e-11 Score=150.70 Aligned_cols=180 Identities=21% Similarity=0.282 Sum_probs=126.9
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 996 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~--------------- 996 (1267)
.+|+|++|++.+.+.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 5899999999999999888762 123356999999999999999999998864
Q ss_pred ---------ceEEeeccccchhccCccHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 997 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 997 ---------~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
.++.++...- .| -..++.+.+.+.. ....|+||||+|.|- ....+.|+.
T Consensus 80 ~~i~~~~~~dlieidaas~----~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------~~a~naLLK 141 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASR----TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------KQSFNALLK 141 (546)
T ss_pred HHHhcCCCCceEEeecccc----cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------------HHHHHHHHH
Confidence 2333332111 11 1234455544432 235799999999872 234445555
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
.++.. +..+.+|++|+.+..+.+.+++|+ .++.|..++.++..+.++.++.++++. .+..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR 215 (546)
T PRK14957 142 TLEEP----PEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLR 215 (546)
T ss_pred HHhcC----CCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55543 345666666677888888899999 899999999999999999999888765 34446778888876 444
Q ss_pred HHHHHH
Q 000823 1143 DLKVIF 1148 (1267)
Q Consensus 1143 DL~~Lv 1148 (1267)
++-.++
T Consensus 216 ~alnlL 221 (546)
T PRK14957 216 DALSLL 221 (546)
T ss_pred HHHHHH
Confidence 444343
No 138
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.5e-11 Score=149.81 Aligned_cols=171 Identities=21% Similarity=0.305 Sum_probs=125.1
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|+|++|++.+++.|+..+.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 5899999999999999998863 1233567999999999999999999998531
Q ss_pred ---------eEEeeccccchhccCccHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhh
Q 000823 998 ---------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1064 (1267)
Q Consensus 998 ---------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ 1064 (1267)
++.++... ...-..++.+.+.+.. ..+.||||||+|.+. ...++.|+..
T Consensus 78 ~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk~ 139 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLKT 139 (504)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHHH
Confidence 33444321 1122345555444433 235799999999762 2334455555
Q ss_pred ccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCC
Q 000823 1065 WDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDG 1138 (1267)
Q Consensus 1065 ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeG 1138 (1267)
++.. ...+++|.+++.+..+.+.+++|+ ..+.|..|+.++..+.++.++.+.++. .+..+..|+..+.|
T Consensus 140 LEep----~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 140 LEEP----PEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHhC----CCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5442 346777778888899999999998 689999999999999999999988775 34457788888877
No 139
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.2e-12 Score=159.23 Aligned_cols=190 Identities=19% Similarity=0.260 Sum_probs=143.9
Q ss_pred eecccCCCCCCCCC-C--CCCCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc---
Q 000823 632 GVRFDKPIPDGVDL-G--GQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--- 705 (1267)
Q Consensus 632 gv~Fd~~~~~~~~l-~--~~c~~~~~ff~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~--- 705 (1267)
||+.-+||+||||| | ---|.++-||--.|.+-..-.||= -..-++-||+.+.+ +.|+||||||||. ++
T Consensus 185 GvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGv--GAsRVRdLF~qAkk---~aP~IIFIDEiDA-vGr~R 258 (596)
T COG0465 185 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGV--GASRVRDLFEQAKK---NAPCIIFIDEIDA-VGRQR 258 (596)
T ss_pred ceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCC--CcHHHHHHHHHhhc---cCCCeEEEehhhh-ccccc
Confidence 78888999999993 3 222334667766666666655554 55678999999999 9999999999998 54
Q ss_pred ------CCcchhhHHHHHH---hcCC--CcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccC
Q 000823 706 ------GNSDSYSTFKSRL---EKLP--DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRG 774 (1267)
Q Consensus 706 ------g~~~~~~~lk~~L---~~l~--g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~ 774 (1267)
|+.+....+--.| +-.. ..|+||++||++|--|+| |.||||
T Consensus 259 g~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~A-------LlRpgR--------------------- 310 (596)
T COG0465 259 GAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPA-------LLRPGR--------------------- 310 (596)
T ss_pred CCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHh-------hcCCCC---------------------
Confidence 3333333333333 3333 489999999999988888 999999
Q ss_pred CCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhhhhhhccCchhHHHHhhhcCCCCccccceeccccccchHH
Q 000823 775 KEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNES 854 (1267)
Q Consensus 775 ~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e~l~~~~Nv~~l~~vL~~~glscaDL~~L~~~d~~ls~~a 854 (1267)
|+++|.|.+||..+|.+|++.|+.. .....+++....+-.+.|++||||..++.+++++
T Consensus 311 -------------FDRqI~V~~PDi~gRe~IlkvH~~~----~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~---- 369 (596)
T COG0465 311 -------------FDRQILVELPDIKGREQILKVHAKN----KPLAEDVDLKKIARGTPGFSGADLANLLNEAALL---- 369 (596)
T ss_pred -------------cceeeecCCcchhhHHHHHHHHhhc----CCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHH----
Confidence 8899999999999999999988766 5666778888888889999999999887764332
Q ss_pred HHHHHHHHHHhhhccCCCCCCcccccccchhHHHHHHHHH
Q 000823 855 AEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQ 894 (1267)
Q Consensus 855 Ie~iv~~A~s~~l~~~~~p~~~~kl~Is~ed~~~al~~lq 894 (1267)
|+ +..+..|++.+|..+.+.+-
T Consensus 370 -------aa-----------r~n~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 370 -------AA-----------RRNKKEITMRDIEEAIDRVI 391 (596)
T ss_pred -------HH-----------HhcCeeEeccchHHHHHHHh
Confidence 11 22466788899999888554
No 140
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=2.9e-11 Score=148.19 Aligned_cols=182 Identities=21% Similarity=0.306 Sum_probs=130.1
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 996 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~--------------- 996 (1267)
.+|++++|++.+.+.|...+.. .+.++++||+||+|+|||++|+++|+.+.+
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 5899999999999999888752 233467999999999999999999999843
Q ss_pred ---------ceEEeeccccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 997 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 997 ---------~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
.++.++.+. ...-..++.+...+... ...|++|||+|.|- ....+.|+.
T Consensus 80 r~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt------------~~A~NaLLK 141 (605)
T PRK05896 80 ESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS------------TSAWNALLK 141 (605)
T ss_pred HHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC------------HHHHHHHHH
Confidence 223333221 01223456666555443 24699999999872 122344555
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
.++.. +..+++|++|+.+..+.+.+++|+ .++.|..|+.++...+++..+.+.++. .+..+..++.++.| +.+
T Consensus 142 tLEEP----p~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR 215 (605)
T PRK05896 142 TLEEP----PKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLR 215 (605)
T ss_pred HHHhC----CCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 55442 346777778888899999999999 689999999999999999999887653 34457788888887 555
Q ss_pred HHHHHHhh
Q 000823 1143 DLKVIFLS 1150 (1267)
Q Consensus 1143 DL~~Lv~~ 1150 (1267)
++..++..
T Consensus 216 ~AlnlLek 223 (605)
T PRK05896 216 DGLSILDQ 223 (605)
T ss_pred HHHHHHHH
Confidence 55444443
No 141
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.35 E-value=9.7e-12 Score=142.71 Aligned_cols=187 Identities=19% Similarity=0.215 Sum_probs=121.2
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhcc
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1011 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~ 1011 (1267)
.+++|+.|.+.+++.++..+.. + +.+..+||+||||+|||++|++++++++.+++.+++.+ .. .
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~----------~---~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~ 81 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK----------G---RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-I 81 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc----------C---CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-H
Confidence 5899999999999999988752 1 22356777999999999999999999999999998876 11 1
Q ss_pred CccHHHHHHHHHHHH-hcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcH
Q 000823 1012 GEGEKYVKAVFSLAS-KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDE 1090 (1267)
Q Consensus 1012 Ge~e~~v~~lF~~A~-k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~ 1090 (1267)
......+........ ...+.||||||+|.+... . ....+ ...++.. ..++.+|+|+|.+..+.+
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-------~-~~~~L---~~~le~~----~~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 82 DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-------D-AQRHL---RSFMEAY----SKNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-------H-HHHHH---HHHHHhc----CCCceEEEEcCChhhchH
Confidence 111111211111110 124689999999977210 1 11222 2223332 245678889999999999
Q ss_pred HHHhcccccccCCCCCHHHHHHHHHHHHhh-------CCCCC-cccHHHHHHHcCCCCHHHHHHHHhhhhhH
Q 000823 1091 AVIRRLPRRLMVNLPDAPNRAKILQVILAK-------EDLSP-DVDFDAIANMTDGYSGSDLKVIFLSHSLI 1154 (1267)
Q Consensus 1091 aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k-------~~l~~-dvdl~~LA~~TeGySg~DL~~Lv~~a~l~ 1154 (1267)
++++|| ..+.|+.|+.+++.++++.++.. .++.- +..+..+++... .|++.++.....+
T Consensus 147 ~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~----~d~r~~l~~l~~~ 213 (316)
T PHA02544 147 PLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNF----PDFRRTINELQRY 213 (316)
T ss_pred HHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC----CCHHHHHHHHHHH
Confidence 999999 57899999999998887654432 23321 112355555443 4666666544433
No 142
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.35 E-value=4.2e-11 Score=130.46 Aligned_cols=184 Identities=21% Similarity=0.268 Sum_probs=116.7
Q ss_pred ccchhcc--ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeecccc
Q 000823 932 VTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1006 (1267)
Q Consensus 932 vt~~DI~--Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL 1006 (1267)
.+|++.. +...+.+.+++++.. .....++|+||+|||||++|+++++++ +.+++.+++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG--------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 4555553 456677777776531 223689999999999999999999887 578899999877
Q ss_pred chhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000823 1007 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1267)
Q Consensus 1007 ~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1267)
.... ..++.... ...+|+|||+|.+.... .....+..+++.+ .. ....+|++++..+.
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~---~~~~~L~~~l~~~-------~~--~~~~iIits~~~~~ 135 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP---EWQEALFHLYNRV-------RE--AGGRLLIAGRAAPA 135 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh---HHHHHHHHHHHHH-------HH--cCCeEEEECCCChH
Confidence 5432 22332222 24699999999873210 1122222222221 11 12234444443443
Q ss_pred CC---cHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHHHHHHHHhhhh
Q 000823 1087 DL---DEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKVIFLSHS 1152 (1267)
Q Consensus 1087 ~L---d~aLlrRFd--~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~DL~~Lv~~a~ 1152 (1267)
.+ .+.+.+||. ..+.++.|+.+++..+++.++.+.++. .+.-+..|++.+.| +.++++.++..+.
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~ 206 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALD 206 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 33 278888874 678999999999999999988766554 33446777776555 7788876555443
No 143
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=5.2e-11 Score=148.47 Aligned_cols=188 Identities=22% Similarity=0.307 Sum_probs=133.3
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEe---ecc----
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI---SMS---- 1004 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I---~~s---- 1004 (1267)
.+|++++|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.-... .|.
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 5899999999999999998863 12346789999999999999999999986531100 010
Q ss_pred ------ccc--hhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccC
Q 000823 1005 ------SIT--SKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1072 (1267)
Q Consensus 1005 ------eL~--s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~ 1072 (1267)
+++ ..........++.+.+.+... ...|++|||+|.|. ....+.|+..|+..
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEEP---- 145 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEEP---- 145 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhcC----
Confidence 000 000001234567777766543 34699999999873 12455566666553
Q ss_pred CCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCC-cccHHHHHHHcCCCCHHHHHHHHhh
Q 000823 1073 TERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMTDGYSGSDLKVIFLS 1150 (1267)
Q Consensus 1073 ~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~-dvdl~~LA~~TeGySg~DL~~Lv~~ 1150 (1267)
+..+++|.+|+.++.|.+.+++|+ .++.|..|+.++..++++..+.+.++.. +..+..||..+.| +.+++..++..
T Consensus 146 P~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLek 222 (725)
T PRK07133 146 PKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQ 222 (725)
T ss_pred CCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 456777778888899999999999 6899999999999999999998877653 3347778888887 55555544443
No 144
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.34 E-value=3e-11 Score=152.17 Aligned_cols=174 Identities=20% Similarity=0.371 Sum_probs=115.4
Q ss_pred ccchhccccHHHHH---HHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch
Q 000823 932 VTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1267)
Q Consensus 932 vt~~DI~Gle~vk~---~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s 1008 (1267)
.+|+|++|.+.+.. .|++.+.. ....++||+||||||||++|+++|+..+.+|+.+++...
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 57899999998874 45555531 122589999999999999999999999999998887531
Q ss_pred hccCccHHHHHHHHHHHH-----hcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecC
Q 000823 1009 KWFGEGEKYVKAVFSLAS-----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1083 (1267)
Q Consensus 1009 ~~~Ge~e~~v~~lF~~A~-----k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1083 (1267)
+ ...++..+..+. .....||||||||.|. ... .+.|+..++ ...+++|++|.
T Consensus 89 ---~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----~~q-------QdaLL~~lE------~g~IiLI~aTT 145 (725)
T PRK13341 89 ---G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----KAQ-------QDALLPWVE------NGTITLIGATT 145 (725)
T ss_pred ---h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----HHH-------HHHHHHHhc------CceEEEEEecC
Confidence 1 112333333331 1235799999999872 111 122332222 24566666553
Q ss_pred --CCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh-------CCCC-CcccHHHHHHHcCCCCHHHHHHHHh
Q 000823 1084 --RPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK-------EDLS-PDVDFDAIANMTDGYSGSDLKVIFL 1149 (1267)
Q Consensus 1084 --~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k-------~~l~-~dvdl~~LA~~TeGySg~DL~~Lv~ 1149 (1267)
....+++++++|+ .++.|+.++.+++..+++..+.. .++. ++..++.|++...| |++.++.
T Consensus 146 enp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G----D~R~lln 216 (725)
T PRK13341 146 ENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG----DARSLLN 216 (725)
T ss_pred CChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC----CHHHHHH
Confidence 3357889999997 68999999999999999999872 2222 23335666666544 5554444
No 145
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=5.1e-11 Score=147.59 Aligned_cols=180 Identities=21% Similarity=0.282 Sum_probs=130.8
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|+|++|++++++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 5899999999999999998763 2334678999999999999999999998542
Q ss_pred ----------eEEeeccccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 998 ----------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
++.++... ...-..++.+.+.+... ...|+||||+|.|. ....+.|+.
T Consensus 80 ~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~naLLk 141 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAFNALLK 141 (576)
T ss_pred HHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHHHHHHH
Confidence 33333221 11223456666555432 24699999999883 123445555
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
.|+.. ...+++|.+|+.++.|.+.+++|+ .++.|..++.++....+..++.++++. .+..+..|++.+.| +.+
T Consensus 142 ~LEep----p~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr 215 (576)
T PRK14965 142 TLEEP----PPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMR 215 (576)
T ss_pred HHHcC----CCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 55542 456788888888899999999999 789999999999999999999888765 44557788888887 444
Q ss_pred HHHHHH
Q 000823 1143 DLKVIF 1148 (1267)
Q Consensus 1143 DL~~Lv 1148 (1267)
++..++
T Consensus 216 ~al~~L 221 (576)
T PRK14965 216 DSLSTL 221 (576)
T ss_pred HHHHHH
Confidence 444343
No 146
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.34 E-value=1.7e-11 Score=142.45 Aligned_cols=264 Identities=16% Similarity=0.179 Sum_probs=150.8
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CceEEeec
Q 000823 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISM 1003 (1267)
Q Consensus 931 ~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg-------~~fi~I~~ 1003 (1267)
...|.+|+|++++|..|...+.. ...+++||.|++|||||++|++++..+. .+|. .+.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~--------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID--------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC--------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 35689999999999999877653 2336899999999999999999987762 2332 110
Q ss_pred -------cccchhc-------------------cCccHHHH------HHHHHHHH---------hcCCeEEEEccchhhh
Q 000823 1004 -------SSITSKW-------------------FGEGEKYV------KAVFSLAS---------KIAPSVIFVDEVDSML 1042 (1267)
Q Consensus 1004 -------seL~s~~-------------------~Ge~e~~v------~~lF~~A~---------k~~PsIIfIDEID~L~ 1042 (1267)
.++.+.. .|.++..+ ...|.... +...++||||||+.+-
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 0011000 11122111 11111111 1224799999999883
Q ss_pred cCCCCCchHHHHHHHHHhhhhhc--cCCcccCCCcEEEEEecCCCC-CCcHHHHhcccccccCCCCC-HHHHHHHHHHHH
Q 000823 1043 GRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATNRPF-DLDEAVIRRLPRRLMVNLPD-APNRAKILQVIL 1118 (1267)
Q Consensus 1043 ~~r~~~~~~~~~~~il~eLL~~l--dgl~~~~~~~VlVIaTTN~p~-~Ld~aLlrRFd~vI~~~~Pd-~eeR~eIL~~ll 1118 (1267)
+..+..+..++++-...+ +|.....+.++++|+|.|..+ .+.++++.||...+.+..|+ .+.+.+|++...
T Consensus 158 -----~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 158 -----DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred -----HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhh
Confidence 222232222222211112 343333456899999999765 69999999999999999997 699999998864
Q ss_pred hhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000823 1119 AKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERA 1198 (1267)
Q Consensus 1119 ~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~ 1198 (1267)
.... .+....+....... .+..+|..+ -+.+..+.. .+.+..|+. ++|........|-.+...+.+++
T Consensus 233 ~~~~-~~~~~~~~~~~~~~-~~~~~I~~a---r~~~~~V~v----~~~~~~yi~---~l~~~~~~~s~Ra~i~l~raArA 300 (350)
T CHL00081 233 SFDK-NPQEFREKYEESQE-ELRSKIVAA---QNLLPKVEI----DYDLRVKIS---QICSELDVDGLRGDIVTNRAAKA 300 (350)
T ss_pred cccc-Chhhhhhhhccccc-cCHHHHHHH---HHhcCCCcc----CHHHHHHHH---HHHHHHCCCCChHHHHHHHHHHH
Confidence 2111 01100111111111 244555422 122222222 222333332 34444333344555555556667
Q ss_pred HHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhcccccc
Q 000823 1199 AAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSS 1237 (1267)
Q Consensus 1199 ~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~ 1237 (1267)
.|..+++ ..|+.+|++.+..-+.+.-..
T Consensus 301 ~Aal~GR-----------~~V~pdDv~~~a~~vL~HR~~ 328 (350)
T CHL00081 301 LAAFEGR-----------TEVTPKDIFKVITLCLRHRLR 328 (350)
T ss_pred HHHHcCC-----------CCCCHHHHHHHHHHHHHHhCc
Confidence 7766665 789999999999888777553
No 147
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=1.3e-11 Score=151.20 Aligned_cols=165 Identities=20% Similarity=0.326 Sum_probs=113.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCC
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 1045 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el-----g~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r 1045 (1267)
+.++|||++|+|||+|+++|++++ +..++++++.+++..+...........|....+ .+.||+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 359999999999999999999987 578899999888766543322212223443333 46899999999886432
Q ss_pred CCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC-C---CCCcHHHHhccc--ccccCCCCCHHHHHHHHHHHHh
Q 000823 1046 ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-P---FDLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILA 1119 (1267)
Q Consensus 1046 ~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~-p---~~Ld~aLlrRFd--~vI~~~~Pd~eeR~eIL~~ll~ 1119 (1267)
. .++.+-.+++.+. . ..+-+|| |+|. | ..+++.|++||. .++.+..|+.+.|.+||+..+.
T Consensus 394 ~---tqeeLF~l~N~l~-------e--~gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 S---TQEEFFHTFNTLH-------N--ANKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred H---HHHHHHHHHHHHH-------h--cCCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 1 1223333444432 1 1223444 5554 3 357889999994 5668899999999999999998
Q ss_pred hCCCC-CcccHHHHHHHcCCCCHHHHHHHHhh
Q 000823 1120 KEDLS-PDVDFDAIANMTDGYSGSDLKVIFLS 1150 (1267)
Q Consensus 1120 k~~l~-~dvdl~~LA~~TeGySg~DL~~Lv~~ 1150 (1267)
..++. ++.-++.|+....+ +.++|..++..
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~r 491 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIR 491 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 87766 44457888888776 66777755553
No 148
>PRK06893 DNA replication initiation factor; Validated
Probab=99.33 E-value=2.6e-11 Score=133.85 Aligned_cols=153 Identities=19% Similarity=0.247 Sum_probs=98.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1047 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 1047 (1267)
..++||||||||||+|++++|+++ +..+.++++..... ....++.... ...+|+||||+.+.+...
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~~~--~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------FSPAVLENLE--QQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--------hhHHHHhhcc--cCCEEEEeChhhhcCChH-
Confidence 368999999999999999999987 44555555532111 1112333222 357999999998854321
Q ss_pred CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCc---HHHHhcc--cccccCCCCCHHHHHHHHHHHHhhCC
Q 000823 1048 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD---EAVIRRL--PRRLMVNLPDAPNRAKILQVILAKED 1122 (1267)
Q Consensus 1048 ~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld---~aLlrRF--d~vI~~~~Pd~eeR~eIL~~ll~k~~ 1122 (1267)
....+..+++. ... .+..++|++++..|..++ +.+++|+ ..++.++.|+.++|.+|++..+...+
T Consensus 109 --~~~~l~~l~n~-------~~~-~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 109 --WELAIFDLFNR-------IKE-QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred --HHHHHHHHHHH-------HHH-cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 11122222222 211 123445555666666554 8899977 45888999999999999999988776
Q ss_pred CC-CcccHHHHHHHcCCCCHHHHH
Q 000823 1123 LS-PDVDFDAIANMTDGYSGSDLK 1145 (1267)
Q Consensus 1123 l~-~dvdl~~LA~~TeGySg~DL~ 1145 (1267)
+. ++..++.|++...| +.+.+.
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~ 201 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLF 201 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHH
Confidence 65 44557788888876 444443
No 149
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.33 E-value=6e-11 Score=146.92 Aligned_cols=190 Identities=17% Similarity=0.222 Sum_probs=124.3
Q ss_pred hhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEEeecc
Q 000823 935 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMS 1004 (1267)
Q Consensus 935 ~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el----------g~~fi~I~~s 1004 (1267)
+.|.+-++..++|...+...+. + ..|...++|+|+||||||++++.+.+++ .+.+++|+|.
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------g--sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------Q--SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------c--CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 4688889888888888764222 1 1232345799999999999999998776 2668899985
Q ss_pred ccch----------hccCc-------cHHHHHHHHHHHH--hcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhc
Q 000823 1005 SITS----------KWFGE-------GEKYVKAVFSLAS--KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1065 (1267)
Q Consensus 1005 eL~s----------~~~Ge-------~e~~v~~lF~~A~--k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~l 1065 (1267)
.+.. .+.+. ....+..+|.... .....||+|||||.|... .+ .++..|+...
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----~Q----DVLYnLFR~~ 896 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----TQ----KVLFTLFDWP 896 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----HH----HHHHHHHHHh
Confidence 4321 11111 2234556666542 223579999999999642 12 2233232221
Q ss_pred cCCcccCCCcEEEEEecCC---CCCCcHHHHhcccc-cccCCCCCHHHHHHHHHHHHhhC-CCCCcccHHHHHHHcCCCC
Q 000823 1066 DGLRTKDTERILVLAATNR---PFDLDEAVIRRLPR-RLMVNLPDAPNRAKILQVILAKE-DLSPDVDFDAIANMTDGYS 1140 (1267)
Q Consensus 1066 dgl~~~~~~~VlVIaTTN~---p~~Ld~aLlrRFd~-vI~~~~Pd~eeR~eIL~~ll~k~-~l~~dvdl~~LA~~TeGyS 1140 (1267)
. ....+++||+++|. +..|++.+++||.. +|.|++++.+++.+||+..+... .+-.+..++.+|+.+.. .
T Consensus 897 -~---~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq-~ 971 (1164)
T PTZ00112 897 -T---KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN-V 971 (1164)
T ss_pred -h---ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh-c
Confidence 1 12467999999986 45677888888854 48899999999999999998753 22234446666665543 3
Q ss_pred HHHHHHH
Q 000823 1141 GSDLKVI 1147 (1267)
Q Consensus 1141 g~DL~~L 1147 (1267)
.+|+|.+
T Consensus 972 SGDARKA 978 (1164)
T PTZ00112 972 SGDIRKA 978 (1164)
T ss_pred CCHHHHH
Confidence 4577633
No 150
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.32 E-value=5.2e-12 Score=112.91 Aligned_cols=67 Identities=30% Similarity=0.519 Sum_probs=59.7
Q ss_pred eEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-cCCceEEcCeeecCCCeeEccCCCEEEEe
Q 000823 147 FTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVVFG 216 (1267)
Q Consensus 147 ~tvGr~~~Cd~~l~~~~~s~~~c~i~~~~~~~~~~~~Led~-s~nGt~VNg~~~gk~~~~~L~~gDeI~f~ 216 (1267)
|+|||+..||++|.++.||..||.|..... ..+||+|+ |.|||||||+++.++..+.|++||+|.|+
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~---~~~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD---GQFYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT---EEEEEEESSSSS-EEETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece---eeEEEEeCCCCCcEEECCEEcCCCCEEECCCCCEEEcC
Confidence 799999999999999999999999987644 45899998 58999999999999999999999999984
No 151
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.32 E-value=1.5e-10 Score=126.92 Aligned_cols=173 Identities=21% Similarity=0.243 Sum_probs=110.1
Q ss_pred Cccchhcc--ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccc
Q 000823 931 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1005 (1267)
Q Consensus 931 ~vt~~DI~--Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~se 1005 (1267)
..+|++.. +.+.+...++++... ......++|+||+|||||+||+++++++ +..++.+++.+
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~-------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAG-------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhc-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 35677754 335555666655431 1223579999999999999999999876 77888888876
Q ss_pred cchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCc-EEEEEecCC
Q 000823 1006 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER-ILVLAATNR 1084 (1267)
Q Consensus 1006 L~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~-VlVIaTTN~ 1084 (1267)
+... +. ......+|+|||+|.+- ...+..+..+++.+ .. ... +++++++..
T Consensus 81 ~~~~------------~~--~~~~~~~liiDdi~~l~-----~~~~~~L~~~~~~~-------~~--~~~~~vl~~~~~~ 132 (227)
T PRK08903 81 PLLA------------FD--FDPEAELYAVDDVERLD-----DAQQIALFNLFNRV-------RA--HGQGALLVAGPAA 132 (227)
T ss_pred hHHH------------Hh--hcccCCEEEEeChhhcC-----chHHHHHHHHHHHH-------HH--cCCcEEEEeCCCC
Confidence 5321 11 12235799999999772 11223333333322 11 223 344444433
Q ss_pred C--CCCcHHHHhcc--cccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHHHHH
Q 000823 1085 P--FDLDEAVIRRL--PRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLK 1145 (1267)
Q Consensus 1085 p--~~Ld~aLlrRF--d~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~DL~ 1145 (1267)
+ ..+.+.+++|| ...+.++.|+.+++..+++.+....++. ++.-++.|++...| +.+++.
T Consensus 133 ~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~ 197 (227)
T PRK08903 133 PLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLM 197 (227)
T ss_pred HHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHH
Confidence 3 24568888888 4688999999999999999888776654 33346677776655 555555
No 152
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.32 E-value=1.6e-10 Score=128.18 Aligned_cols=178 Identities=16% Similarity=0.190 Sum_probs=111.5
Q ss_pred Cccchhcc-c-cHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccc
Q 000823 931 GVTFDDIG-A-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1005 (1267)
Q Consensus 931 ~vt~~DI~-G-le~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~se 1005 (1267)
..+|++.. | ...+...++..... .....++|+||+|||||+|++++++++ +..+.+++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 34677754 3 34455555554431 112479999999999999999999876 44556665544
Q ss_pred cchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCc-EEEEEecCC
Q 000823 1006 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER-ILVLAATNR 1084 (1267)
Q Consensus 1006 L~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~-VlVIaTTN~ 1084 (1267)
... ....+++.... ..+|+||||+.+.+.. ..+..+..+++.++ + .++ .+++++++.
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~---~~~~~lf~l~n~~~---e------~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE---LWEMAIFDLYNRIL---E------SGRTRLLITGDRP 141 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH---HHHHHHHHHHHHHH---H------cCCCeEEEeCCCC
Confidence 221 11122222222 3699999999884321 11223333333332 1 223 355555556
Q ss_pred CCC---CcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHHHHH
Q 000823 1085 PFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLK 1145 (1267)
Q Consensus 1085 p~~---Ld~aLlrRFd--~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~DL~ 1145 (1267)
|.. +.+.+++||. .++.+..|+.++|.++++......++. ++.-++.|++..+| +.+.+.
T Consensus 142 p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~ 207 (235)
T PRK08084 142 PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLF 207 (235)
T ss_pred hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHH
Confidence 554 6799999995 688899999999999999877766654 44457888888886 455554
No 153
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=6.5e-11 Score=145.89 Aligned_cols=179 Identities=21% Similarity=0.234 Sum_probs=128.3
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|+|++|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIES-------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 5899999999999999998862 1233579999999999999999999998642
Q ss_pred ----------eEEeeccccchhccCccHHHHHHHHHHHH----hcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 998 ----------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
++.++... ...-..++.+.+.+. .....|++|||+|.|- ....+.|+.
T Consensus 80 ~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLLK 141 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALLK 141 (563)
T ss_pred HHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHHH
Confidence 22222111 011234445544333 2345799999999882 234555666
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
.++.. +..+++|.+|+.+..+.+++++|+ ..+.|..++.++..++++..+...++. .+..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR 215 (563)
T PRK06647 142 TIEEP----PPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVR 215 (563)
T ss_pred hhccC----CCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66542 456777777787888999999999 578999999999999999999887765 34456778888777 555
Q ss_pred HHHHH
Q 000823 1143 DLKVI 1147 (1267)
Q Consensus 1143 DL~~L 1147 (1267)
++..+
T Consensus 216 ~alsl 220 (563)
T PRK06647 216 DAYTL 220 (563)
T ss_pred HHHHH
Confidence 55533
No 154
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=1.3e-10 Score=140.14 Aligned_cols=171 Identities=20% Similarity=0.281 Sum_probs=122.4
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|+|++|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 6899999999999999988862 2334679999999999999999999988432
Q ss_pred -----------eEEeeccccchhccCccHHHHHHHHHHH----HhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000823 998 -----------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1062 (1267)
Q Consensus 998 -----------fi~I~~seL~s~~~Ge~e~~v~~lF~~A----~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL 1062 (1267)
++.++.... . .-..++.+-+.+ ......||||||+|.|. ....+.|+
T Consensus 81 C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~n~LL 142 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAFNSLL 142 (451)
T ss_pred HHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHHHHHH
Confidence 333332111 0 112233322222 22356899999999883 12345566
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCC
Q 000823 1063 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDG 1138 (1267)
Q Consensus 1063 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeG 1138 (1267)
..++.. +..+++|++|+.+..+.+.+++|+ ..+.|..++.++..++++..+.+.++. .+..+..|+..+.|
T Consensus 143 k~lEep----~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 143 KTLEEP----PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHhhcC----CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 555552 346677777788889999999999 689999999999999999998887754 34457778888776
No 155
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.30 E-value=2e-11 Score=147.23 Aligned_cols=193 Identities=22% Similarity=0.276 Sum_probs=144.4
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce-------EEe-ec
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INI-SM 1003 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~f-------i~I-~~ 1003 (1267)
.+|+|++|++.+.+.|...+.. .+-..++||.||.|||||++||.+|+.+++.- ..+ .|
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 5799999999999999999874 22336899999999999999999999996542 111 01
Q ss_pred cccchh-c---------cCccHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCc
Q 000823 1004 SSITSK-W---------FGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1069 (1267)
Q Consensus 1004 seL~s~-~---------~Ge~e~~v~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~ 1069 (1267)
-++... + ....-..++.+.+.+.- ..+.|++|||++.|. ...+|.||..++.
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------~~afNALLKTLEE-- 145 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------KQAFNALLKTLEE-- 145 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh------------HHHHHHHhccccc--
Confidence 111000 0 01123355666665543 235799999999873 4556667666554
Q ss_pred ccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCc-ccHHHHHHHcCCCCHHHHHHHH
Q 000823 1070 TKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD-VDFDAIANMTDGYSGSDLKVIF 1148 (1267)
Q Consensus 1070 ~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~d-vdl~~LA~~TeGySg~DL~~Lv 1148 (1267)
++..|++|.+|..++.++..+++|+ .++.|...+.++....|..++.++++..+ .-+..||+..+| +.+|.-.++
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslL 221 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLL 221 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHH
Confidence 4678999999999999999999999 78999999999999999999999998744 447888899998 888877777
Q ss_pred hhhhhHH
Q 000823 1149 LSHSLIC 1155 (1267)
Q Consensus 1149 ~~a~l~~ 1155 (1267)
..+...+
T Consensus 222 Dq~i~~~ 228 (515)
T COG2812 222 DQAIAFG 228 (515)
T ss_pred HHHHHcc
Confidence 7665554
No 156
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.30 E-value=1.8e-11 Score=141.95 Aligned_cols=260 Identities=18% Similarity=0.246 Sum_probs=141.3
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CC--ceEEee
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GA--NFINIS 1002 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el-------g~--~fi~I~ 1002 (1267)
..|.++.|++++++.|.-.+.. ...+++||+|+||+|||++|+++|..+ ++ ++..+.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 5689999999999988754431 112589999999999999999999998 33 222111
Q ss_pred cc---------ccc---------------hhccCcc--HHHH---HHHHH--HHHhcCCeEEEEccchhhhcCCCCCchH
Q 000823 1003 MS---------SIT---------------SKWFGEG--EKYV---KAVFS--LASKIAPSVIFVDEVDSMLGRRENPGEH 1051 (1267)
Q Consensus 1003 ~s---------eL~---------------s~~~Ge~--e~~v---~~lF~--~A~k~~PsIIfIDEID~L~~~r~~~~~~ 1051 (1267)
+. ++. ...+|.. +..+ ...|. ...+...++||||||+.+ +...+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl-----~~~~q 145 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL-----EDHIV 145 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC-----CHHHH
Confidence 10 000 0012210 0000 00011 001112369999999987 22222
Q ss_pred HHHHHHHHhhh--hhccCCcccCCCcEEEEEecCCCC-CCcHHHHhcccccccCCCCCH-HHHHHHHHHHHhhCCCCCcc
Q 000823 1052 EAMRKMKNEFM--VNWDGLRTKDTERILVLAATNRPF-DLDEAVIRRLPRRLMVNLPDA-PNRAKILQVILAKEDLSPDV 1127 (1267)
Q Consensus 1052 ~~~~~il~eLL--~~ldgl~~~~~~~VlVIaTTN~p~-~Ld~aLlrRFd~vI~~~~Pd~-eeR~eIL~~ll~k~~l~~dv 1127 (1267)
..+...+++-. ...+|.....+.++++|+|+|..+ .+.++++.||...+.++.|.. ++|.+|++.......
T Consensus 146 ~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~----- 220 (334)
T PRK13407 146 DLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDA----- 220 (334)
T ss_pred HHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccc-----
Confidence 23223322211 122444334457899999999754 689999999999999988866 999999988643211
Q ss_pred cHHHHHH---HcCCCCHHHHHHHHhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000823 1128 DFDAIAN---MTDGYSGSDLKVIFLSHSLICNVLLLNLWSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEG 1204 (1267)
Q Consensus 1128 dl~~LA~---~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e~ 1204 (1267)
+...+.. ...-.+..+|..+. +.+..+.. .+.+..|+. ++|........|-.+...+.+++.|..++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~i~~a~---~~~~~V~v----~~~~~~yi~---~l~~~~~~~s~Ra~i~l~~aA~a~A~l~G 290 (334)
T PRK13407 221 DHDAFMAKWGAEDMQLRGRILGAR---ARLPQLKT----PNTVLHDCA---ALCIALGSDGLRGELTLLRAARALAAFEG 290 (334)
T ss_pred cchhhhccccccccCCHHHHHHHH---HhcCCccc----CHHHHHHHH---HHHHHHCCCCchHHHHHHHHHHHHHHHcC
Confidence 1111110 00112344444221 11222211 222333333 33333332233333334444555666665
Q ss_pred CCCCCCCCCCCCcccCHHHHHHHHHHhccccc
Q 000823 1205 KPAPALSGCADIRPLNMDDFKYAHERVCASVS 1236 (1267)
Q Consensus 1205 ~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s 1236 (1267)
+ ..|+.+|++.+..-+.....
T Consensus 291 r-----------~~V~~~Di~~~~~~vl~hR~ 311 (334)
T PRK13407 291 A-----------EAVGRSHLRSVATMALSHRL 311 (334)
T ss_pred C-----------CeeCHHHHHHHHHHhhhhhc
Confidence 5 68999999888866655544
No 157
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=8.2e-11 Score=145.67 Aligned_cols=185 Identities=21% Similarity=0.191 Sum_probs=129.3
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEee---------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS--------- 1002 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~--------- 1002 (1267)
.+|+|++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.....+
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 5899999999999999998762 233468999999999999999999999865422111
Q ss_pred ----c--------cccchh--ccCccHHHHHHHHHHHHhcC----CeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhh
Q 000823 1003 ----M--------SSITSK--WFGEGEKYVKAVFSLASKIA----PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1064 (1267)
Q Consensus 1003 ----~--------seL~s~--~~Ge~e~~v~~lF~~A~k~~----PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ 1064 (1267)
| .+++.- -....-..++.+.+.+...+ ..||||||+|.|- ....+.|+..
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLKt 155 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLKT 155 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHHH
Confidence 0 011000 00011335666766665432 5799999999882 1234455555
Q ss_pred ccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCC-cccHHHHHHHcCCCCHHH
Q 000823 1065 WDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMTDGYSGSD 1143 (1267)
Q Consensus 1065 ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~-dvdl~~LA~~TeGySg~D 1143 (1267)
|+.. ...+.+|.+|+.++.+.+.+++|+ .++.|..|+.++...+++.++.++++.- +..+..|+..+.| +.++
T Consensus 156 LEeP----p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~ 229 (598)
T PRK09111 156 LEEP----PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRD 229 (598)
T ss_pred HHhC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 5443 345666667777777888999999 7899999999999999999999887653 3456777888877 5555
Q ss_pred HHHH
Q 000823 1144 LKVI 1147 (1267)
Q Consensus 1144 L~~L 1147 (1267)
+..+
T Consensus 230 al~~ 233 (598)
T PRK09111 230 GLSL 233 (598)
T ss_pred HHHH
Confidence 5533
No 158
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=9.4e-11 Score=142.38 Aligned_cols=183 Identities=21% Similarity=0.309 Sum_probs=126.8
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|++++|++.+.+.|+..+.. .+..+.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 5899999999999999998863 1233568999999999999999999998641
Q ss_pred ----------eEEeeccccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 998 ----------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
++.++.+. ...-..++.+.+.+... .+.|++|||+|.|. ....+.|+.
T Consensus 80 ~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLLk 141 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALLK 141 (486)
T ss_pred HHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHHH
Confidence 11121110 01123355555555433 35799999999773 223345555
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
.++.. +..+++|.+|+.++.+.+++++|+ .++.|..|+.++...+++.+++..++. .+..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr 215 (486)
T PRK14953 142 TLEEP----PPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMR 215 (486)
T ss_pred HHhcC----CCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55543 234555556667788888999999 579999999999999999999988765 33446778888776 455
Q ss_pred HHHHHHhhh
Q 000823 1143 DLKVIFLSH 1151 (1267)
Q Consensus 1143 DL~~Lv~~a 1151 (1267)
++..++..+
T Consensus 216 ~al~~Ldkl 224 (486)
T PRK14953 216 DAASLLDQA 224 (486)
T ss_pred HHHHHHHHH
Confidence 555454433
No 159
>PRK08727 hypothetical protein; Validated
Probab=99.27 E-value=5.3e-10 Score=123.86 Aligned_cols=145 Identities=23% Similarity=0.320 Sum_probs=96.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1047 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 1047 (1267)
..++|+||+|||||+|++++++++ +..++++++.++.. .+..++.... ...+|+||||+.+.+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCChH-
Confidence 459999999999999999998776 66777777655332 2223343332 346999999998854321
Q ss_pred CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecC-CCCC---CcHHHHhcc--cccccCCCCCHHHHHHHHHHHHhhC
Q 000823 1048 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN-RPFD---LDEAVIRRL--PRRLMVNLPDAPNRAKILQVILAKE 1121 (1267)
Q Consensus 1048 ~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN-~p~~---Ld~aLlrRF--d~vI~~~~Pd~eeR~eIL~~ll~k~ 1121 (1267)
.....-.+++.+. . . ..-||+|+| .|.. +++.+++|| ..++.++.|+.++|.+|++......
T Consensus 111 --~~~~lf~l~n~~~-------~--~-~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 111 --DEVALFDFHNRAR-------A--A-GITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred --HHHHHHHHHHHHH-------H--c-CCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 1222223333221 1 1 233444444 5554 478999997 4678899999999999999987766
Q ss_pred CCC-CcccHHHHHHHcCC
Q 000823 1122 DLS-PDVDFDAIANMTDG 1138 (1267)
Q Consensus 1122 ~l~-~dvdl~~LA~~TeG 1138 (1267)
++. ++..++.|++.+.|
T Consensus 179 ~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 179 GLALDEAAIDWLLTHGER 196 (233)
T ss_pred CCCCCHHHHHHHHHhCCC
Confidence 654 34456778887764
No 160
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.26 E-value=2e-10 Score=131.40 Aligned_cols=170 Identities=23% Similarity=0.318 Sum_probs=115.8
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CceEEeecccc
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSI 1006 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg-----~~fi~I~~seL 1006 (1267)
.+|+|+.|.+.+++.|..++.. . . ..++||+||||+|||++++++++++. .+++.+++++.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~----------~--~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE----------K--N--MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC----------C--C--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 5899999999999999988752 1 1 13689999999999999999999872 34555654432
Q ss_pred chhccCccHHHHHH-HHHHHHh-----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEE
Q 000823 1007 TSKWFGEGEKYVKA-VFSLASK-----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1080 (1267)
Q Consensus 1007 ~s~~~Ge~e~~v~~-lF~~A~k-----~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIa 1080 (1267)
.+ ...+.. +...+.. ..+.+|+|||+|.+.. ...+.|...++... ....+|.
T Consensus 80 ~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~------------~~~~~L~~~le~~~----~~~~lIl 137 (319)
T PRK00440 80 RG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS------------DAQQALRRTMEMYS----QNTRFIL 137 (319)
T ss_pred cc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH------------HHHHHHHHHHhcCC----CCCeEEE
Confidence 11 112222 2222222 2346999999998731 11223333333322 2345666
Q ss_pred ecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCC
Q 000823 1081 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDG 1138 (1267)
Q Consensus 1081 TTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeG 1138 (1267)
++|.+..+.+.+.+|+ .++.|+.++.++...+++.++.+.++. .+..++.|+..+.|
T Consensus 138 ~~~~~~~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g 195 (319)
T PRK00440 138 SCNYSSKIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG 195 (319)
T ss_pred EeCCccccchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7777778888899998 568999999999999999999887764 34457777777665
No 161
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=2.4e-10 Score=135.96 Aligned_cols=177 Identities=19% Similarity=0.226 Sum_probs=121.4
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|++++|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 5899999999999999888762 1234569999999999999999999999662
Q ss_pred ------------------eEEeeccccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHH
Q 000823 998 ------------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMR 1055 (1267)
Q Consensus 998 ------------------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~ 1055 (1267)
++.++... ......++.+.+.+... ...||||||+|.|. .
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~------------~ 141 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS------------I 141 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC------------H
Confidence 11121110 01123455554444322 24699999999883 1
Q ss_pred HHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHH
Q 000823 1056 KMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIAN 1134 (1267)
Q Consensus 1056 ~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~ 1134 (1267)
...+.|+..++.. +..+++|.+|+.+..+-+.+++|+ .++.|..++.++..+.++..+...++. .+..++.|+.
T Consensus 142 ~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~ 216 (397)
T PRK14955 142 AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGR 216 (397)
T ss_pred HHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 1233444444432 234556666666788888999999 689999999999999999998877654 4445777888
Q ss_pred HcCCCCHHHHH
Q 000823 1135 MTDGYSGSDLK 1145 (1267)
Q Consensus 1135 ~TeGySg~DL~ 1145 (1267)
.+.| +.+.+.
T Consensus 217 ~s~g-~lr~a~ 226 (397)
T PRK14955 217 KAQG-SMRDAQ 226 (397)
T ss_pred HcCC-CHHHHH
Confidence 8877 344333
No 162
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.1e-10 Score=137.02 Aligned_cols=173 Identities=19% Similarity=0.263 Sum_probs=122.7
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------eEEe
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------FINI 1001 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~----------fi~I 1001 (1267)
.+|+|++|++.+.+.+...+.. .+.+.++|||||||+|||++|+++|+.+... +..+
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~-------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIEN-------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 5899999999999999888862 1234689999999999999999999988542 1111
Q ss_pred eccccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEE
Q 000823 1002 SMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERIL 1077 (1267)
Q Consensus 1002 ~~seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~Vl 1077 (1267)
... .........++.+++.+... .+.||+|||+|.+.. ...+.|+..++.. ....+
T Consensus 81 ~l~----~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~~----~~~~~ 140 (367)
T PRK14970 81 ELD----AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEEP----PAHAI 140 (367)
T ss_pred Eec----cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhCC----CCceE
Confidence 110 01112235566777766433 246999999997731 2234455444442 23456
Q ss_pred EEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCC
Q 000823 1078 VLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDG 1138 (1267)
Q Consensus 1078 VIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeG 1138 (1267)
+|.+++.+..+.+++.+|+ ..+.|..|+.++...++...+.+.++. ++..++.|+..+.|
T Consensus 141 ~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 141 FILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred EEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 6666777788899999998 678999999999999999999888764 44556777777665
No 163
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1.2e-10 Score=145.04 Aligned_cols=180 Identities=21% Similarity=0.279 Sum_probs=129.6
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.+|++++|++.+++.|+..+.. . +-..++||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~----------~---rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALIS----------N---RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHc----------C---CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 5899999999999999998863 1 123589999999999999999999999653
Q ss_pred ------------eEEeeccccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhh
Q 000823 998 ------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 1061 (1267)
Q Consensus 998 ------------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eL 1061 (1267)
++.++.. ....-..++.+.+.+... ...||||||+|.|- ....+.|
T Consensus 80 ~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~naL 141 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNAL 141 (620)
T ss_pred HHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHHH
Confidence 1222211 122345677777766533 24699999999882 2344556
Q ss_pred hhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCC
Q 000823 1062 MVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 1140 (1267)
Q Consensus 1062 L~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGyS 1140 (1267)
+..++.. ...+++|++|+.+..+-+.+++|+ ..+.|..++.++....+..++.++++. .+..+..|++.+.| .
T Consensus 142 LK~LEeP----p~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~ 215 (620)
T PRK14948 142 LKTLEEP----PPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-G 215 (620)
T ss_pred HHHHhcC----CcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 6666542 356777777788888999999999 788999999999999999888877654 23447778888877 3
Q ss_pred HHHHHHHH
Q 000823 1141 GSDLKVIF 1148 (1267)
Q Consensus 1141 g~DL~~Lv 1148 (1267)
.+++..++
T Consensus 216 lr~A~~lL 223 (620)
T PRK14948 216 LRDAESLL 223 (620)
T ss_pred HHHHHHHH
Confidence 34444333
No 164
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.24 E-value=8.3e-11 Score=147.36 Aligned_cols=257 Identities=23% Similarity=0.309 Sum_probs=143.9
Q ss_pred chhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------------------
Q 000823 934 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------------------- 994 (1267)
Q Consensus 934 ~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el------------------- 994 (1267)
|.+|+|++.++..|.-.+..+ ...+|||.|++|||||++|++|+..+
T Consensus 3 f~~ivGq~~~~~al~~~av~~--------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP--------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC--------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 678999999998886655421 12579999999999999999999988
Q ss_pred ----------------CCceEEeeccccchhccCcc--HHHHH--------HHHHHHHhcCCeEEEEccchhhhcCCCCC
Q 000823 995 ----------------GANFINISMSSITSKWFGEG--EKYVK--------AVFSLASKIAPSVIFVDEVDSMLGRRENP 1048 (1267)
Q Consensus 995 ----------------g~~fi~I~~seL~s~~~Ge~--e~~v~--------~lF~~A~k~~PsIIfIDEID~L~~~r~~~ 1048 (1267)
..+|+.+.+.......+|.. +..+. .++..| ...|||||||+.|- .
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~-----~ 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLD-----D 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCC-----H
Confidence 25667666554333344432 11110 011111 23699999999882 1
Q ss_pred chHHHHHHHHHhhh--hhccCCcccCCCcEEEEEecCCC-CCCcHHHHhcccccccCCCC-CHHHHHHHHHHHHhhCCCC
Q 000823 1049 GEHEAMRKMKNEFM--VNWDGLRTKDTERILVLAATNRP-FDLDEAVIRRLPRRLMVNLP-DAPNRAKILQVILAKEDLS 1124 (1267)
Q Consensus 1049 ~~~~~~~~il~eLL--~~ldgl~~~~~~~VlVIaTTN~p-~~Ld~aLlrRFd~vI~~~~P-d~eeR~eIL~~ll~k~~l~ 1124 (1267)
..+..+..++++-. ...++.......+++||+|+|.. ..+.++++.||+..|.++.| +.+++.++++..+....
T Consensus 141 ~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~-- 218 (633)
T TIGR02442 141 HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDA-- 218 (633)
T ss_pred HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhcc--
Confidence 22222222222110 11123333334679999999964 46889999999988888766 46888899886654211
Q ss_pred CcccHHHHHHHcCCCCHHHHHHHHhhh-hhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000823 1125 PDVDFDAIANMTDGYSGSDLKVIFLSH-SLICNVLLLNLWSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAE 1203 (1267)
Q Consensus 1125 ~dvdl~~LA~~TeGySg~DL~~Lv~~a-~l~~~vr~~~~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~a~~e 1203 (1267)
+...+.....+ ....+..-+..+ .+...+. +...+ +..+.++|........|..+...+-+++.|..+
T Consensus 219 ---~~~~~~~~~~~-~~~~l~~~i~~ar~~~~~V~----is~~~---~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~ 287 (633)
T TIGR02442 219 ---DPEAFAARWAA-EQEELRNRIARARSLLPSVR----ISDSL---IRFISELCIEFGVDGHRADIVMARAARALAALD 287 (633)
T ss_pred ---CcHHHHHHhhh-hHHHHHHHHHHHHHhCCCCC----CCHHH---HHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHc
Confidence 11111111111 001111111111 1111111 11112 222334444433323444444555566666666
Q ss_pred CCCCCCCCCCCCCcccCHHHHHHHHHHhccccc
Q 000823 1204 GKPAPALSGCADIRPLNMDDFKYAHERVCASVS 1236 (1267)
Q Consensus 1204 ~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s 1236 (1267)
++ ..|+.+|+.+|+..+.+...
T Consensus 288 gr-----------~~V~~~Dv~~A~~lvL~hR~ 309 (633)
T TIGR02442 288 GR-----------RRVTAEDVREAAELVLPHRR 309 (633)
T ss_pred CC-----------CcCCHHHHHHHHHHHhhhhc
Confidence 55 78999999999998876644
No 165
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=3.2e-10 Score=138.20 Aligned_cols=181 Identities=20% Similarity=0.263 Sum_probs=127.6
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 996 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~--------------- 996 (1267)
.+|+|++|++.+++.|+..+.. + +-++.+||+||+|+|||++|+++|+.+.+
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~----------g---rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDN----------N---RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHc----------C---CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 5899999999999999998852 1 23356899999999999999999998832
Q ss_pred ---------ceEEeeccccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 997 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 997 ---------~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
.++.++.+.- ..-..++.+...+... ...|++|||+|.|. ....+.|+.
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A~NALLK 139 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEAFNALLK 139 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHHH
Confidence 1233332110 0123455555443222 23699999999882 233445555
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
.++.. +..+.+|.+|+.+..+.+.+++|+ .++.|..++.++..+.++.++.++++. .+..+..|++.+.| +.+
T Consensus 140 ~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR 213 (535)
T PRK08451 140 TLEEP----PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLR 213 (535)
T ss_pred HHhhc----CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 55543 345666667777899999999997 789999999999999999999988765 34457778888777 555
Q ss_pred HHHHHHh
Q 000823 1143 DLKVIFL 1149 (1267)
Q Consensus 1143 DL~~Lv~ 1149 (1267)
++..++.
T Consensus 214 ~alnlLd 220 (535)
T PRK08451 214 DTLTLLD 220 (535)
T ss_pred HHHHHHH
Confidence 5554443
No 166
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=5.3e-10 Score=138.84 Aligned_cols=177 Identities=18% Similarity=0.220 Sum_probs=121.2
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEE----------e
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN----------I 1001 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~----------I 1001 (1267)
.+|++++|++.+++.|+..+.. .+-+..+||+||+|+|||++|+++|+.+.+.-.. -
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~-------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRM-------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 5899999999999999987752 1233579999999999999999999999763100 0
Q ss_pred ecc------cc-------chhccCc---cHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhh
Q 000823 1002 SMS------SI-------TSKWFGE---GEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 1061 (1267)
Q Consensus 1002 ~~s------eL-------~s~~~Ge---~e~~v~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eL 1061 (1267)
.|. .+ +..+-|. ....++.+.+.+.. ....|++|||+|.|. ....+.|
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------~~a~naL 147 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------TAAFNAF 147 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------HHHHHHH
Confidence 000 00 0001111 12345554444422 234699999999883 1224455
Q ss_pred hhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCC
Q 000823 1062 MVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDG 1138 (1267)
Q Consensus 1062 L~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeG 1138 (1267)
+..++.. +..+++|.+|+.+..|-+.+++|+ .++.|..++.++....++.++.++++. .+..++.|+..+.|
T Consensus 148 LK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 148 LKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHhCC----CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 5555543 234566666677788889999999 789999999999999999998887754 44557788888877
No 167
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.22 E-value=1.5e-10 Score=127.15 Aligned_cols=165 Identities=21% Similarity=0.344 Sum_probs=102.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCC
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 1045 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el-----g~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r 1045 (1267)
..++||||+|+|||+|.+|+++++ +..++++++.++...+.......-..-|....+ ...+|+||+|+.+.++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGK- 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTH-
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCc-
Confidence 469999999999999999999875 678999998887654332211110112222222 4579999999998532
Q ss_pred CCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC---CCcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhh
Q 000823 1046 ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAK 1120 (1267)
Q Consensus 1046 ~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd--~vI~~~~Pd~eeR~eIL~~ll~k 1120 (1267)
...++.+-.+++.+. . .++.+||++...|. .+++.+.+||. .++.+..|+.+.|.+|++..+..
T Consensus 113 --~~~q~~lf~l~n~~~-------~--~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 113 --QRTQEELFHLFNRLI-------E--SGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE 181 (219)
T ss_dssp --HHHHHHHHHHHHHHH-------H--TTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHH-------h--hCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH
Confidence 111233333333332 2 23456666655554 45688999984 47788999999999999999998
Q ss_pred CCCC-CcccHHHHHHHcCCCCHHHHHHHHh
Q 000823 1121 EDLS-PDVDFDAIANMTDGYSGSDLKVIFL 1149 (1267)
Q Consensus 1121 ~~l~-~dvdl~~LA~~TeGySg~DL~~Lv~ 1149 (1267)
.++. ++.-++.|++...+ +.++|..++.
T Consensus 182 ~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~ 210 (219)
T PF00308_consen 182 RGIELPEEVIEYLARRFRR-DVRELEGALN 210 (219)
T ss_dssp TT--S-HHHHHHHHHHTTS-SHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHhhcC-CHHHHHHHHH
Confidence 8876 34446778887765 6777774444
No 168
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.22 E-value=1.3e-10 Score=140.01 Aligned_cols=164 Identities=17% Similarity=0.265 Sum_probs=106.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCceEEeeccccchhccCccHH---HHHHHHHHHHhcCCeEEEEccchhhh
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK---YVKAVFSLASKIAPSVIFVDEVDSML 1042 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el-----g~~fi~I~~seL~s~~~Ge~e~---~v~~lF~~A~k~~PsIIfIDEID~L~ 1042 (1267)
..++|||++|+|||+|++++++++ +..++++++.++...+...... .+.. |.... ....+|+||||+.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~-~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEI-CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHh-ccCCEEEEecccccc
Confidence 469999999999999999999965 5788899998876654432211 1211 21112 245799999999874
Q ss_pred cCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC---CCcHHHHhccc--ccccCCCCCHHHHHHHHHHH
Q 000823 1043 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVI 1117 (1267)
Q Consensus 1043 ~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd--~vI~~~~Pd~eeR~eIL~~l 1117 (1267)
++. ..++.+..+++.+. . ..+.+||++...|. .+++.+++||. .++.+..|+.++|.+||+..
T Consensus 220 ~k~---~~~e~lf~l~N~~~-------~--~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YKE---KTNEIFFTIFNNFI-------E--NDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CCH---HHHHHHHHHHHHHH-------H--cCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 321 12233334444332 1 22334444444443 46789999994 56778899999999999999
Q ss_pred HhhCCC---CCcccHHHHHHHcCCCCHHHHHHHHh
Q 000823 1118 LAKEDL---SPDVDFDAIANMTDGYSGSDLKVIFL 1149 (1267)
Q Consensus 1118 l~k~~l---~~dvdl~~LA~~TeGySg~DL~~Lv~ 1149 (1267)
+...++ -++.-++.|+..+.| +.+.|..++.
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~ 321 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVS 321 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHH
Confidence 987653 234446778887776 5666664433
No 169
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.21 E-value=1.6e-10 Score=124.45 Aligned_cols=224 Identities=21% Similarity=0.260 Sum_probs=149.7
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C----CceEEeecccc
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G----ANFINISMSSI 1006 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el-g----~~fi~I~~seL 1006 (1267)
..+.||+|.++..+.|.-.... + +. .+++|.||||+|||+-+.++|+++ | --++++++++-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~-----------g-nm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE-----------G-NM--PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc-----------C-CC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 5688999999999988776642 2 23 389999999999999999999998 3 23567777653
Q ss_pred chhccCccHHHHHH---HHHHHH-hcCC---eEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEE
Q 000823 1007 TSKWFGEGEKYVKA---VFSLAS-KIAP---SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1079 (1267)
Q Consensus 1007 ~s~~~Ge~e~~v~~---lF~~A~-k~~P---sIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVI 1079 (1267)
.+ -..++. .|..-+ ..+| .||++||.|++ ..+.+.+++++++.. .....+.
T Consensus 90 RG------IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----T~gAQQAlRRtMEiy-----------S~ttRFa 147 (333)
T KOG0991|consen 90 RG------IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----TAGAQQALRRTMEIY-----------SNTTRFA 147 (333)
T ss_pred cc------cHHHHHHHHHHHHhhccCCCCceeEEEeeccchh-----hhHHHHHHHHHHHHH-----------cccchhh
Confidence 22 112222 333222 2233 59999999999 456778888887754 2234567
Q ss_pred EecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHH
Q 000823 1080 AATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVL 1158 (1267)
Q Consensus 1080 aTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr 1158 (1267)
.++|....+-+.+.+|+ .++.+...+.++...-+..+.+.+++. .+..++.+.-..+|.....|..+.........+-
T Consensus 148 laCN~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn 226 (333)
T KOG0991|consen 148 LACNQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVN 226 (333)
T ss_pred hhhcchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccc
Confidence 78999999999999999 678888888888888888888777776 4455777877777744444443333333333332
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000823 1159 LLNLWSDWLLVYLIVLQNLCVTAAHRPIKEILEK 1192 (1267)
Q Consensus 1159 ~~~~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~ 1192 (1267)
.-+.......++...++.+.+.+..+.+.+.++.
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~~~~~~~A~~i 260 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACLKRNIDEALKI 260 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHHhccHHHHHHH
Confidence 2333334444455556666666666655555443
No 170
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.21 E-value=2.8e-10 Score=132.63 Aligned_cols=261 Identities=21% Similarity=0.269 Sum_probs=160.3
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-CceEEeec-------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-ANFINISM------- 1003 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg-~~fi~I~~------- 1003 (1267)
..|.-++|++.++..|--... .....++||.|+.|+|||+++|+||..|. ..++. .|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~cdP~ 78 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNCDPD 78 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCCCCC
Confidence 456788999998887754432 22347899999999999999999999882 22111 11
Q ss_pred ------c-------------------ccchhccCccHH-HHHH-----HHH---------HHHhcCCeEEEEccchhhhc
Q 000823 1004 ------S-------------------SITSKWFGEGEK-YVKA-----VFS---------LASKIAPSVIFVDEVDSMLG 1043 (1267)
Q Consensus 1004 ------s-------------------eL~s~~~Ge~e~-~v~~-----lF~---------~A~k~~PsIIfIDEID~L~~ 1043 (1267)
. .++..-.|.++. .+.. +.+ ...+....||||||+..|-
T Consensus 79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~- 157 (423)
T COG1239 79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD- 157 (423)
T ss_pred ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc-
Confidence 0 112222333333 1111 111 0011123799999998772
Q ss_pred CCCCCchHHHHHHHHHh--hhhhccCCcccCCCcEEEEEecCCC-CCCcHHHHhcccccccCCCC-CHHHHHHHHHHHHh
Q 000823 1044 RRENPGEHEAMRKMKNE--FMVNWDGLRTKDTERILVLAATNRP-FDLDEAVIRRLPRRLMVNLP-DAPNRAKILQVILA 1119 (1267)
Q Consensus 1044 ~r~~~~~~~~~~~il~e--LL~~ldgl~~~~~~~VlVIaTTN~p-~~Ld~aLlrRFd~vI~~~~P-d~eeR~eIL~~ll~ 1119 (1267)
..-...+-.++.+ -..+.+|+....+.++++|+|+|.. ..|-+.|+.||...+.+..| +.++|.+|++..+.
T Consensus 158 ----d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 158 ----DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred ----HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 1122223333333 2334567776777899999999986 58999999999999999665 79999999999887
Q ss_pred hCCCCCcccHHHHHHHcCCCCHHHHH-HHHhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000823 1120 KEDLSPDVDFDAIANMTDGYSGSDLK-VIFLSHSLICNVLLLNLWSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERA 1198 (1267)
Q Consensus 1120 k~~l~~dvdl~~LA~~TeGySg~DL~-~Lv~~a~l~~~vr~~~~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~ 1198 (1267)
.. ..++.-++.++... ..|+ +++.+.++...+ .........+.++|.+++....|..+...+..++
T Consensus 234 f~-~~Pe~f~~~~~~~~-----~~lR~~ii~ar~~l~~V-------~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a 300 (423)
T COG1239 234 FE-AVPEAFLEKYADAQ-----RALRARIIAARSLLSEV-------ELDDDAETKIAELCARLAVDGHRADIVVVRAAKA 300 (423)
T ss_pred hh-cCcHHHHHHHHHHH-----HHHHHHHHHHHhccccc-------cCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 63 23333334444333 2333 222222222222 1222334445578888877766666666666666
Q ss_pred HHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhccccc
Q 000823 1199 AAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVS 1236 (1267)
Q Consensus 1199 ~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s 1236 (1267)
.+...|+ ..|+.+|+++|....-+.-.
T Consensus 301 ~aa~~Gr-----------~~v~~~Di~~a~~l~l~hR~ 327 (423)
T COG1239 301 LAALRGR-----------TEVEEEDIREAAELALLHRR 327 (423)
T ss_pred HHHhcCc-----------eeeehhhHHHHHhhhhhhhh
Confidence 6666665 78999999999987655433
No 171
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=5.9e-10 Score=138.67 Aligned_cols=182 Identities=21% Similarity=0.287 Sum_probs=126.1
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce-------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------- 998 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~f------------- 998 (1267)
.+|+|++|++.+++.|+..+.. + +....+||+||+|+|||++|+++|+.+.+..
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~----------~---~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAE----------G---RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh----------C---CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 5899999999999999888763 1 2235689999999999999999999985422
Q ss_pred ------------EEeeccccchhccCccHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000823 999 ------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1062 (1267)
Q Consensus 999 ------------i~I~~seL~s~~~Ge~e~~v~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL 1062 (1267)
+.++... ...-..++.+.+.+.. ....||||||+|.|. ...++.|+
T Consensus 80 c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~naLL 141 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAFNALL 141 (585)
T ss_pred HHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHHHHHH
Confidence 1222110 1112334444443332 235699999999873 12344555
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCH
Q 000823 1063 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1141 (1267)
Q Consensus 1063 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg 1141 (1267)
..++.. ...+++|.+++..+.+.+.+++|+ .++.|..++..+...+++.++.+.++. .+..+..|+..+.| +.
T Consensus 142 k~LEep----p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dl 215 (585)
T PRK14950 142 KTLEEP----PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SM 215 (585)
T ss_pred HHHhcC----CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 555543 235666666777777888999998 678999999999999999998887764 33446788888877 66
Q ss_pred HHHHHHHhh
Q 000823 1142 SDLKVIFLS 1150 (1267)
Q Consensus 1142 ~DL~~Lv~~ 1150 (1267)
+++..++..
T Consensus 216 r~al~~Lek 224 (585)
T PRK14950 216 RDAENLLQQ 224 (585)
T ss_pred HHHHHHHHH
Confidence 665555544
No 172
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.20 E-value=1.1e-10 Score=134.23 Aligned_cols=143 Identities=17% Similarity=0.236 Sum_probs=98.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchh--ccCccHH----------HHHHHHHHHHhcCCeEEEEccc
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--WFGEGEK----------YVKAVFSLASKIAPSVIFVDEV 1038 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~--~~Ge~e~----------~v~~lF~~A~k~~PsIIfIDEI 1038 (1267)
++|||.||||||||++|+++|..++.+++++++...+.. ++|...- .....+..|.+ .+.+|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 579999999999999999999999999999988665433 4443211 11123444544 4578999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHh--hhhhccCCcc-cCCCcEEEEEecCCCC------------CCcHHHHhcccccccCC
Q 000823 1039 DSMLGRRENPGEHEAMRKMKNE--FMVNWDGLRT-KDTERILVLAATNRPF------------DLDEAVIRRLPRRLMVN 1103 (1267)
Q Consensus 1039 D~L~~~r~~~~~~~~~~~il~e--LL~~ldgl~~-~~~~~VlVIaTTN~p~------------~Ld~aLlrRFd~vI~~~ 1103 (1267)
|.. .+.....+..+++. .+...+.... .....+.||||.|... .+++++++||-.++.++
T Consensus 144 n~a-----~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 144 DAG-----RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred hcc-----CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 966 33333444444441 1111111111 1224789999999843 57899999997778999
Q ss_pred CCCHHHHHHHHHHHHh
Q 000823 1104 LPDAPNRAKILQVILA 1119 (1267)
Q Consensus 1104 ~Pd~eeR~eIL~~ll~ 1119 (1267)
.|+.++-.+|+.....
T Consensus 219 Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 219 YLEHDNEAAIVLAKAK 234 (327)
T ss_pred CCCHHHHHHHHHhhcc
Confidence 9999999999987643
No 173
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.19 E-value=1.8e-10 Score=129.75 Aligned_cols=141 Identities=23% Similarity=0.327 Sum_probs=91.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccc------cchhccCccHHHH-H-------------------HHHHH
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEKYV-K-------------------AVFSL 1024 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~se------L~s~~~Ge~e~~v-~-------------------~lF~~ 1024 (1267)
..+||+||||||||++|+++|..+|.+|+.++|.. +++.+.+.....+ . ..+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 47999999999999999999999999999997753 3443332221111 1 01122
Q ss_pred HHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc-----CCCcEEEEEecCCC-----CCCcHHHHh
Q 000823 1025 ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----DTERILVLAATNRP-----FDLDEAVIR 1094 (1267)
Q Consensus 1025 A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~-----~~~~VlVIaTTN~p-----~~Ld~aLlr 1094 (1267)
|.+ ...+|+||||+.+ ++..+..+..++++-...+.+.... ...++.||+|+|.. ..+++++++
T Consensus 102 A~~-~g~~lllDEi~r~-----~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~ 175 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRS-----KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD 175 (262)
T ss_pred HHH-cCCEEEEcchhhC-----CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh
Confidence 222 3469999999976 2222222233332211111111100 12367899999975 367899999
Q ss_pred cccccccCCCCCHHHHHHHHHHHH
Q 000823 1095 RLPRRLMVNLPDAPNRAKILQVIL 1118 (1267)
Q Consensus 1095 RFd~vI~~~~Pd~eeR~eIL~~ll 1118 (1267)
|| ..+.++.|+.++..+|++...
T Consensus 176 R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 176 RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred hc-EEEECCCCCHHHHHHHHHHhh
Confidence 99 789999999999999998764
No 174
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.18 E-value=3.3e-10 Score=131.65 Aligned_cols=258 Identities=16% Similarity=0.240 Sum_probs=141.5
Q ss_pred chhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCceE-------
Q 000823 934 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI------- 999 (1267)
Q Consensus 934 ~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el-------g~~fi------- 999 (1267)
|..|+|+++++..|.-.+..| ...++||.|++|+|||+|+++++..+ +.++-
T Consensus 3 f~~ivgq~~~~~al~~~~~~~--------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDP--------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred ccccccHHHHHHHHHHHhcCC--------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 678999999998886655421 13689999999999999999999877 22221
Q ss_pred --Eeecc-------------------cc-----chhccCccH--HHH--------HHHHHHHHhcCCeEEEEccchhhhc
Q 000823 1000 --NISMS-------------------SI-----TSKWFGEGE--KYV--------KAVFSLASKIAPSVIFVDEVDSMLG 1043 (1267)
Q Consensus 1000 --~I~~s-------------------eL-----~s~~~Ge~e--~~v--------~~lF~~A~k~~PsIIfIDEID~L~~ 1043 (1267)
..+|. ++ ....+|... ..+ ..++. +....+||||||+.+-
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~---~A~~GvL~lDEi~~L~- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLA---RANRGILYIDEVNLLE- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcce---eccCCEEEecChHhCC-
Confidence 00000 00 001222210 000 00111 1224799999999872
Q ss_pred CCCCCchHHHHHHHHHhhh--hhccCCcccCCCcEEEEEecCCCC-CCcHHHHhcccccccCCCCCH-HHHHHHHHHHHh
Q 000823 1044 RRENPGEHEAMRKMKNEFM--VNWDGLRTKDTERILVLAATNRPF-DLDEAVIRRLPRRLMVNLPDA-PNRAKILQVILA 1119 (1267)
Q Consensus 1044 ~r~~~~~~~~~~~il~eLL--~~ldgl~~~~~~~VlVIaTTN~p~-~Ld~aLlrRFd~vI~~~~Pd~-eeR~eIL~~ll~ 1119 (1267)
...+..+-.++.+-. ...+|.....+.++++|+|.|..+ .+.++++.||...+.++.|.. ++|.+|++....
T Consensus 145 ----~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~ 220 (337)
T TIGR02030 145 ----DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTE 220 (337)
T ss_pred ----HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhh
Confidence 122222222221110 111333333356899999998654 799999999999999998875 899999987543
Q ss_pred hCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000823 1120 KEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAA 1199 (1267)
Q Consensus 1120 k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~~~~~~~ 1199 (1267)
...- .....+.+.... --...+|. ...+.+..+.. .+.+..|+. ++|........|..+...+.+++.
T Consensus 221 ~~~~-~~~~~~~~~~e~-~~~~~~I~---~a~~~~~~V~v----~d~~~~~i~---~l~~~~~~~s~Ra~i~l~raArA~ 288 (337)
T TIGR02030 221 YDAD-PHAFCEKWQTEQ-EALQAKIV---NAQNLLPQVTI----PYDVLVKVA---ELCAELDVDGLRGELTLNRAAKAL 288 (337)
T ss_pred cccC-chhhhhhhhhhh-hcCHHHHH---HHHHHhccCcC----CHHHHHHHH---HHHHHHCCCCCcHHHHHHHHHHHH
Confidence 2110 000011111111 12334443 11111222211 222233322 333333322234444555556667
Q ss_pred HhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhccccc
Q 000823 1200 AMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVS 1236 (1267)
Q Consensus 1200 a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s 1236 (1267)
|..+++ ..|+.+|++.|..-+.+...
T Consensus 289 Aal~GR-----------~~V~~dDv~~~a~~vL~HR~ 314 (337)
T TIGR02030 289 AAFEGR-----------TEVTVDDIRRVAVLALRHRL 314 (337)
T ss_pred HHHcCC-----------CCCCHHHHHHHHHHHHHHhC
Confidence 777666 68999999999988877655
No 175
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.17 E-value=3e-10 Score=112.17 Aligned_cols=124 Identities=40% Similarity=0.575 Sum_probs=81.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhccCccHHH---HHHHHHHHHhcCCeEEEEccchhhhc
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKY---VKAVFSLASKIAPSVIFVDEVDSMLG 1043 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~~Ge~e~~---v~~lF~~A~k~~PsIIfIDEID~L~~ 1043 (1267)
..+++|+||||+|||++++++++.+ +.+++.+++.+............ ....+..+....+.+|+|||++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~- 97 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS- 97 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh-
Confidence 3589999999999999999999998 89999999877654332211111 1222334445568999999999761
Q ss_pred CCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC--CCcHHHHhcccccccCC
Q 000823 1044 RRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF--DLDEAVIRRLPRRLMVN 1103 (1267)
Q Consensus 1044 ~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~--~Ld~aLlrRFd~vI~~~ 1103 (1267)
. .....+...+....... ....++.+|+++|... .+++.+.+||+.++.++
T Consensus 98 ----~---~~~~~~~~~i~~~~~~~--~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 98 ----R---GAQNALLRVLETLNDLR--IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ----H---HHHHHHHHHHHhcCcee--ccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 1 11112222222111111 1235688889998876 78889999998777665
No 176
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.17 E-value=1.4e-09 Score=135.78 Aligned_cols=172 Identities=20% Similarity=0.333 Sum_probs=107.3
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEEe
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1001 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el----------g~~fi~I 1001 (1267)
.+|++++|.+...+.+...+.. ..+.+++|+||||||||++|+++++.. +.+|+.+
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~--------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVAS--------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 4788999999988887665532 112479999999999999999998765 3578999
Q ss_pred eccccc-------hhccCccHHH----HHHHHH----------HHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHh
Q 000823 1002 SMSSIT-------SKWFGEGEKY----VKAVFS----------LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE 1060 (1267)
Q Consensus 1002 ~~seL~-------s~~~Ge~e~~----v~~lF~----------~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~e 1060 (1267)
++..+. ..++|..... ....+. .......+||||||++.| +...+..+.++++.
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----d~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----DPLLQNKLLKVLED 291 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----CHHHHHHHHHHHhh
Confidence 987652 1122221110 001111 011223479999999987 22223333333332
Q ss_pred hhhhc-cC-C---------------cccCCCcEEEEE-ecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCC
Q 000823 1061 FMVNW-DG-L---------------RTKDTERILVLA-ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKED 1122 (1267)
Q Consensus 1061 LL~~l-dg-l---------------~~~~~~~VlVIa-TTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~ 1122 (1267)
-...+ .+ . .......+++|+ ||+.+..+++++++||. .+.|+.++.+++.+|++..+.+.+
T Consensus 292 ~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~~ 370 (615)
T TIGR02903 292 KRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKIN 370 (615)
T ss_pred CeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHcC
Confidence 11000 00 0 001123455554 55678899999999994 678899999999999999988654
Q ss_pred C
Q 000823 1123 L 1123 (1267)
Q Consensus 1123 l 1123 (1267)
+
T Consensus 371 v 371 (615)
T TIGR02903 371 V 371 (615)
T ss_pred C
Confidence 3
No 177
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=9.7e-10 Score=136.97 Aligned_cols=179 Identities=21% Similarity=0.286 Sum_probs=128.4
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 996 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~--------------- 996 (1267)
.+|+|++|++.+++.|...+.. .+.++.+|||||+|+|||++|+++|+.+.+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 6899999999999999998862 223456999999999999999999998853
Q ss_pred ----------ceEEeeccccchhccCccHHHHHHHHHHHHhcC----CeEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000823 997 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1062 (1267)
Q Consensus 997 ----------~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~----PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL 1062 (1267)
+++.+++... .....++.+...+...+ ..|++|||+|.|. ....+.|+
T Consensus 81 C~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~naLL 142 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAFNAFL 142 (614)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHHHHHH
Confidence 3333333210 11334566665554332 4699999999882 12344555
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCC-cccHHHHHHHcCCCCH
Q 000823 1063 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMTDGYSG 1141 (1267)
Q Consensus 1063 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~-dvdl~~LA~~TeGySg 1141 (1267)
..|+.. +..+++|.+|+.+..|-+.+++|+ .++.|..++.++....++.++.++++.. +..+..|+..+.| +.
T Consensus 143 K~LEep----p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dl 216 (614)
T PRK14971 143 KTLEEP----PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GM 216 (614)
T ss_pred HHHhCC----CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 555543 345667777777788999999999 7899999999999999999999888763 3447888888876 44
Q ss_pred HHHHHH
Q 000823 1142 SDLKVI 1147 (1267)
Q Consensus 1142 ~DL~~L 1147 (1267)
+++..+
T Consensus 217 r~al~~ 222 (614)
T PRK14971 217 RDALSI 222 (614)
T ss_pred HHHHHH
Confidence 444333
No 178
>PRK05642 DNA replication initiation factor; Validated
Probab=99.17 E-value=1.2e-09 Score=121.06 Aligned_cols=152 Identities=21% Similarity=0.256 Sum_probs=101.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1047 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 1047 (1267)
..++|+||+|+|||+|++++++++ +..++++++.++.... ..+.+.... ..+|+||||+.+.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh--
Confidence 579999999999999999999865 6788888887765421 122222222 2589999999774331
Q ss_pred CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC---CCcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhCC
Q 000823 1048 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKED 1122 (1267)
Q Consensus 1048 ~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd--~vI~~~~Pd~eeR~eIL~~ll~k~~ 1122 (1267)
...+.+-.+++.+ . +.++.+||+++..|. .+.+.+++||. .++.+..|+.++|.++++......+
T Consensus 114 -~~~~~Lf~l~n~~-------~--~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 -DWEEALFHLFNRL-------R--DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred -HHHHHHHHHHHHH-------H--hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 1122233333332 1 234566676666553 34689999994 6677899999999999997666655
Q ss_pred CC-CcccHHHHHHHcCCCCHHHHH
Q 000823 1123 LS-PDVDFDAIANMTDGYSGSDLK 1145 (1267)
Q Consensus 1123 l~-~dvdl~~LA~~TeGySg~DL~ 1145 (1267)
+. ++.-++.|++...+ +.+.+.
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~ 206 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALF 206 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHH
Confidence 54 34446777887776 555554
No 179
>PRK06620 hypothetical protein; Validated
Probab=99.16 E-value=7.9e-10 Score=121.11 Aligned_cols=138 Identities=15% Similarity=0.236 Sum_probs=92.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCch
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1050 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~ 1050 (1267)
..++||||||+|||+|++++++..+..++. .... . ...+ + ...+|+|||||.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-------~----~~~~----~-~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-------N----EEIL----E-KYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-------c----hhHH----h-cCCEEEEeccccch--------
Confidence 579999999999999999999988753322 1000 0 0111 1 23799999999551
Q ss_pred HHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCC--CcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhCCCC-C
Q 000823 1051 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD--LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-P 1125 (1267)
Q Consensus 1051 ~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~--Ld~aLlrRFd--~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~ 1125 (1267)
...+-.++|.+. +.++.+||+++..|.. + +.+++|+. .++.+..|+.+.+..+++..+...++. +
T Consensus 99 ~~~lf~l~N~~~---------e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~ 168 (214)
T PRK06620 99 EPALLHIFNIIN---------EKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS 168 (214)
T ss_pred HHHHHHHHHHHH---------hcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 123334444332 2345677777765543 5 88999994 268889999999999999998876654 4
Q ss_pred cccHHHHHHHcCCCCHHHHH
Q 000823 1126 DVDFDAIANMTDGYSGSDLK 1145 (1267)
Q Consensus 1126 dvdl~~LA~~TeGySg~DL~ 1145 (1267)
+..++.|++...+ +.+.+.
T Consensus 169 ~ev~~~L~~~~~~-d~r~l~ 187 (214)
T PRK06620 169 RQIIDFLLVNLPR-EYSKII 187 (214)
T ss_pred HHHHHHHHHHccC-CHHHHH
Confidence 4457778888776 444444
No 180
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.15 E-value=2.5e-10 Score=139.85 Aligned_cols=184 Identities=24% Similarity=0.299 Sum_probs=108.1
Q ss_pred HHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 000823 918 KRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 997 (1267)
Q Consensus 918 ~~li~~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~ 997 (1267)
..+...+.| +|.|++.+|..|.-.+....... ...+...+...+|||+|+||+|||++|+++++.+...
T Consensus 195 ~~l~~si~p---------~i~G~~~~k~~l~l~l~gg~~~~--~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~ 263 (509)
T smart00350 195 ERLSRSLAP---------SIYGHEDIKKAILLLLFGGVHKN--LPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA 263 (509)
T ss_pred HHHHHhhCc---------cccCcHHHHHHHHHHHhCCCccc--cCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc
Confidence 345555555 67899999888766665421110 0011111223479999999999999999999987432
Q ss_pred -eEE---eeccccchhccCcc---HHHH-HHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhc--cC
Q 000823 998 -FIN---ISMSSITSKWFGEG---EKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DG 1067 (1267)
Q Consensus 998 -fi~---I~~seL~s~~~Ge~---e~~v-~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~l--dg 1067 (1267)
|+. .++..+........ +..+ ...+..| ..++++|||++.+- ...+..+..++++-...+ .|
T Consensus 264 ~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~-----~~~q~~L~e~me~~~i~i~k~G 335 (509)
T smart00350 264 VYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLA---DNGVCCIDEFDKMD-----DSDRTAIHEAMEQQTISIAKAG 335 (509)
T ss_pred eEcCCCCCCcCCccccceEccCcceEEecCccEEec---CCCEEEEechhhCC-----HHHHHHHHHHHhcCEEEEEeCC
Confidence 222 12222211111000 0000 0011122 34799999999872 222333333332211111 23
Q ss_pred CcccCCCcEEEEEecCCCC-------------CCcHHHHhcccccccC-CCCCHHHHHHHHHHHHhh
Q 000823 1068 LRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILAK 1120 (1267)
Q Consensus 1068 l~~~~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~vI~~-~~Pd~eeR~eIL~~ll~k 1120 (1267)
....-+.++.||||+|..+ .|++++++|||.++.+ +.|+.+...+|+++++..
T Consensus 336 ~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 336 ITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred EEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 3333456889999999752 6899999999886555 889999999999998754
No 181
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.4e-09 Score=127.84 Aligned_cols=162 Identities=22% Similarity=0.339 Sum_probs=111.4
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CceEEeeccccchh-
Q 000823 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSITSK- 1009 (1267)
Q Consensus 936 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg-----~~fi~I~~seL~s~- 1009 (1267)
.+.+-+...+++...+...+. + ..| .+++++||||||||.+++.+++++. ..+++|+|..+.+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~-------~--~~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR-------G--ERP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc-------C--CCC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 367778888888777653222 1 233 4699999999999999999999983 33899999654221
Q ss_pred ---------c-----cCcc-HHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCC
Q 000823 1010 ---------W-----FGEG-EKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT 1073 (1267)
Q Consensus 1010 ---------~-----~Ge~-e~~v~~lF~~A~k-~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~ 1073 (1267)
. .|.+ ......+++...+ ...-||++||+|.|..+.. .++..|+...... .
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~~----~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGEN----K 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhcccc----c
Confidence 1 1222 1223334443333 3456999999999975432 3444443332222 5
Q ss_pred CcEEEEEecCCC---CCCcHHHHhcc-cccccCCCCCHHHHHHHHHHHHhh
Q 000823 1074 ERILVLAATNRP---FDLDEAVIRRL-PRRLMVNLPDAPNRAKILQVILAK 1120 (1267)
Q Consensus 1074 ~~VlVIaTTN~p---~~Ld~aLlrRF-d~vI~~~~Pd~eeR~eIL~~ll~k 1120 (1267)
.++.+|+.+|.. +.+++.+.++| ...|.|++++.+|...|++.....
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~ 205 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEE 205 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 688999999986 57889999987 355899999999999999998865
No 182
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.13 E-value=1.2e-09 Score=128.75 Aligned_cols=166 Identities=19% Similarity=0.337 Sum_probs=115.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-----CCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhc
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLG 1043 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el-----g~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~ 1043 (1267)
+...++||||.|.|||+|++|++++. +..+++++...++..++-.....-..-|..-+ .-.+++||||+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 34569999999999999999999888 45688888877766554433332333555555 557999999999876
Q ss_pred CCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCC---CcHHHHhccc--ccccCCCCCHHHHHHHHHHHH
Q 000823 1044 RRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVIL 1118 (1267)
Q Consensus 1044 ~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~vI~~~~Pd~eeR~eIL~~ll 1118 (1267)
+... ++..-.++|.+. . ..+-+|+.+...|.. +.+.+++||. .++.+..|+.+.|..||+...
T Consensus 190 k~~~---qeefFh~FN~l~-------~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 190 KERT---QEEFFHTFNALL-------E--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred ChhH---HHHHHHHHHHHH-------h--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 5322 333444455443 1 234555555556654 5589999995 467788999999999999988
Q ss_pred hhCCCC-CcccHHHHHHHcCCCCHHHHHHHHh
Q 000823 1119 AKEDLS-PDVDFDAIANMTDGYSGSDLKVIFL 1149 (1267)
Q Consensus 1119 ~k~~l~-~dvdl~~LA~~TeGySg~DL~~Lv~ 1149 (1267)
...++. ++.-+..||..... +.++|..++.
T Consensus 258 ~~~~~~i~~ev~~~la~~~~~-nvReLegaL~ 288 (408)
T COG0593 258 EDRGIEIPDEVLEFLAKRLDR-NVRELEGALN 288 (408)
T ss_pred HhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHH
Confidence 887766 44456778887764 5666664444
No 183
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.11 E-value=2.4e-10 Score=108.75 Aligned_cols=96 Identities=22% Similarity=0.375 Sum_probs=79.9
Q ss_pred hhhcccCC--CCcceeeeC-CeeEEcCCCCc-ceeecCCCCccceEEEEEEecCCceEEEEEEecCCceEEcCeeecCCC
Q 000823 128 CRLLSQSG--QNSNVPICA-SIFTVGSSRQC-NFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKNT 203 (1267)
Q Consensus 128 grL~s~~~--~~~~l~i~~-~~~tvGr~~~C-d~~l~~~~~s~~~c~i~~~~~~~~~~~~Led~s~nGt~VNg~~~gk~~ 203 (1267)
+.|.++.. ..+.+.|.. ..|+|||+..| |+.|.+..+|..||.|..... ....++++.|.|||+|||+++.++.
T Consensus 2 ~~L~~~~~~~~~~~~~l~~~~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~--~~~~~~~~~s~~g~~vn~~~~~~~~ 79 (102)
T cd00060 2 PRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGD--GGVVLIDLGSTNGTFVNGQRVSPGE 79 (102)
T ss_pred eEEEEecCCCceeEEEECCCCeEEECcCCCcCCEEcCCCCeeCcceEEEEcCC--CCEEEEECCCCCCeEECCEECCCCC
Confidence 44555544 577888998 99999999999 999999999999999996643 2356888888899999999999999
Q ss_pred eeEccCCCEEEEeecCCeEEEEE
Q 000823 204 SCELRSGDEVVFGSLGNHAYIFQ 226 (1267)
Q Consensus 204 ~~~L~~gDeI~f~~~~~~ayiF~ 226 (1267)
.+.|.+||.|.|+. +.+.|.|+
T Consensus 80 ~~~l~~gd~i~ig~-~~~~~~~~ 101 (102)
T cd00060 80 PVRLRDGDVIRLGN-TSISFRFE 101 (102)
T ss_pred cEECCCCCEEEECC-eEEEEEEe
Confidence 99999999999987 44455554
No 184
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.09 E-value=2.1e-10 Score=121.47 Aligned_cols=115 Identities=27% Similarity=0.363 Sum_probs=76.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC----ceEEeeccccchhccCccHHHHHHHHHHH----HhcCCeEEEEccch
Q 000823 968 KPCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVIFVDEVD 1039 (1267)
Q Consensus 968 kP~~gVLL~GPpGTGKT~LAkALA~elg~----~fi~I~~seL~s~~~Ge~e~~v~~lF~~A----~k~~PsIIfIDEID 1039 (1267)
+|...+||.||+|+|||.||+++|..+.. +++.++|+++... +..+..+..++..+ ......||||||||
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 46678999999999999999999999996 9999999988651 11111122222111 11122499999999
Q ss_pred hhhcCCCCCchHHHHHHHHHhhhhhccCCccc-------CCCcEEEEEecCCC
Q 000823 1040 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRP 1085 (1267)
Q Consensus 1040 ~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~-------~~~~VlVIaTTN~p 1085 (1267)
..... ........-..+.+.|+..|++.... +-.++++|+|+|--
T Consensus 79 Ka~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 79 KAHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp GCSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred hcccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 98654 22233334457778888877654432 23689999999964
No 185
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.07 E-value=1.2e-09 Score=132.58 Aligned_cols=170 Identities=21% Similarity=0.317 Sum_probs=110.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhccCccHHHHHHHHHHHH--------hcCCeEEEEccchhhh
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLAS--------KIAPSVIFVDEVDSML 1042 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~--------k~~PsIIfIDEID~L~ 1042 (1267)
+-+||+||||-|||+||+.||+++|+.+++|++++-.+ ...++...+.|- ...|.+|+|||||--
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa- 399 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA- 399 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCC-
Confidence 45889999999999999999999999999999987322 223333222221 246899999999922
Q ss_pred cCCCCCchHHHHHHHHHhhhh---hccCCcccCC----------CcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHH
Q 000823 1043 GRRENPGEHEAMRKMKNEFMV---NWDGLRTKDT----------ERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPN 1109 (1267)
Q Consensus 1043 ~~r~~~~~~~~~~~il~eLL~---~ldgl~~~~~----------~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~ee 1109 (1267)
...+.+.++..+.. +..|-..... -.--|||.||....-.-.-+|-|..+|.|..|...-
T Consensus 400 -------~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~ 472 (877)
T KOG1969|consen 400 -------PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSR 472 (877)
T ss_pred -------cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhH
Confidence 11222222221110 0111111000 012478889976643333345788999999999999
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHH
Q 000823 1110 RAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNV 1157 (1267)
Q Consensus 1110 R~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~v 1157 (1267)
..+-|+.++..+++. .|...|+.+++ ++..||+.-|+...+++..
T Consensus 473 Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 473 LVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASN 517 (877)
T ss_pred HHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHHh
Confidence 999999999999886 44455555554 3456888777777766654
No 186
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.07 E-value=3.2e-09 Score=115.51 Aligned_cols=185 Identities=22% Similarity=0.317 Sum_probs=133.4
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccc
Q 000823 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1007 (1267)
Q Consensus 931 ~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~ 1007 (1267)
.+.+.+|.|.+.+++.|.+.... |.++ .|.++|||+|..||||++|+||+.+++ +..+|+|+-.++.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~-------F~~G---~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQ-------FAEG---LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHH-------HHcC---CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 37899999999999999776643 3333 467899999999999999999999888 6778999887764
Q ss_pred hhccCccHHHHHHHHHHHHhcC-CeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000823 1008 SKWFGEGEKYVKAVFSLASKIA-PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1267)
Q Consensus 1008 s~~~Ge~e~~v~~lF~~A~k~~-PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1267)
. +-.+++..+..+ .-|||+|++- + ..+ ......|-..++|.-...+.+|+|.+|+|+..
T Consensus 126 ~---------Lp~l~~~Lr~~~~kFIlFcDDLS-F-----e~g-----d~~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 126 T---------LPDLVELLRARPEKFILFCDDLS-F-----EEG-----DDAYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred h---------HHHHHHHHhcCCceEEEEecCCC-C-----CCC-----chHHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 3 345555555443 4699999984 1 111 11223344556777776789999999999854
Q ss_pred CCcH----------------------HHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCc---ccHHH--HHHHcCCC
Q 000823 1087 DLDE----------------------AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD---VDFDA--IANMTDGY 1139 (1267)
Q Consensus 1087 ~Ld~----------------------aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~d---vdl~~--LA~~TeGy 1139 (1267)
.|++ .+-.||...+.|..++.++-.+|+..+.++.++..+ ...+. .|..-.|-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4431 233399999999999999999999999999887642 22222 33444566
Q ss_pred CHHHHH
Q 000823 1140 SGSDLK 1145 (1267)
Q Consensus 1140 Sg~DL~ 1145 (1267)
||+--.
T Consensus 266 SGR~A~ 271 (287)
T COG2607 266 SGRVAW 271 (287)
T ss_pred ccHhHH
Confidence 666554
No 187
>PHA02244 ATPase-like protein
Probab=99.05 E-value=2.1e-09 Score=125.06 Aligned_cols=129 Identities=21% Similarity=0.286 Sum_probs=81.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhccC---ccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG---EGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1047 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~G---e~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 1047 (1267)
..|||+||||||||+||+++|..++.+|+.++.-.-.....| ........-|..|.+ ...+||||||+.+-
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~----- 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDASI----- 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcCC-----
Confidence 469999999999999999999999999999874210011111 111111122333333 45899999999762
Q ss_pred CchHHHHHHHHHh-hhhhccCCcccCCCcEEEEEecCCC-----------CCCcHHHHhcccccccCCCCCH
Q 000823 1048 PGEHEAMRKMKNE-FMVNWDGLRTKDTERILVLAATNRP-----------FDLDEAVIRRLPRRLMVNLPDA 1107 (1267)
Q Consensus 1048 ~~~~~~~~~il~e-LL~~ldgl~~~~~~~VlVIaTTN~p-----------~~Ld~aLlrRFd~vI~~~~Pd~ 1107 (1267)
+.....+..++.. ++..+++. .....++.+|+|+|.+ ..+++++++|| ..|.|+.|+.
T Consensus 194 p~vq~~L~~lLd~r~l~l~g~~-i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~ 263 (383)
T PHA02244 194 PEALIIINSAIANKFFDFADER-VTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEK 263 (383)
T ss_pred HHHHHHHHHHhccCeEEecCcE-EecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcH
Confidence 2222333333322 11222222 1123578999999973 57899999999 6799999984
No 188
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.04 E-value=5.9e-10 Score=135.60 Aligned_cols=153 Identities=25% Similarity=0.310 Sum_probs=87.7
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----------------
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------------- 995 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg---------------- 995 (1267)
..|.|+.|+..+++.+.-.+. ...+++|.||||+|||++|++++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~----------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA----------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc----------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 478999999888776654432 225799999999999999999987541
Q ss_pred ------------CceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 996 ------------ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 996 ------------~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
.||....++......+|.....-...+..|. ..|||||||+.+- ...++.+...++.-..
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~-----~~~~~~L~~~LE~~~v 324 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFK-----RSVLDALREPIEDGSI 324 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCC-----HHHHHHHHHHHHcCcE
Confidence 1222222211111111211000111233333 3899999999772 1222222222221111
Q ss_pred h--ccCCcccCCCcEEEEEecCCC-----C------------------CCcHHHHhcccccccCCCCCHH
Q 000823 1064 N--WDGLRTKDTERILVLAATNRP-----F------------------DLDEAVIRRLPRRLMVNLPDAP 1108 (1267)
Q Consensus 1064 ~--ldgl~~~~~~~VlVIaTTN~p-----~------------------~Ld~aLlrRFd~vI~~~~Pd~e 1108 (1267)
. -.+.......++.+|+++|.. . .+...+++|||..+.++.++..
T Consensus 325 ~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 325 SISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred EEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 0 011112224678999999963 1 4778899999988888877654
No 189
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=1.6e-08 Score=116.58 Aligned_cols=171 Identities=17% Similarity=0.288 Sum_probs=115.7
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------eEEeec
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------FINISM 1003 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~--------fi~I~~ 1003 (1267)
++|+++.|++.+++.|...+.. .+-++.+||+||+|+|||++|+++|+.+-+. ++.+..
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~ 67 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP 67 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc
Confidence 3689999999999999888752 2234578999999999999999999987432 223322
Q ss_pred cccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEE
Q 000823 1004 SSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1079 (1267)
Q Consensus 1004 seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVI 1079 (1267)
. .+..+ .-..++.+.+.+... ...|++||++|.|- ....|.|+..++.. +..+++|
T Consensus 68 ~--~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------~~a~naLLK~LEep----p~~t~~i 127 (313)
T PRK05564 68 I--NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------EQAQNAFLKTIEEP----PKGVFII 127 (313)
T ss_pred c--cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcC------------HHHHHHHHHHhcCC----CCCeEEE
Confidence 1 01111 123455555544332 35699999999872 23345555555542 3456666
Q ss_pred EecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCC
Q 000823 1080 AATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGY 1139 (1267)
Q Consensus 1080 aTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGy 1139 (1267)
.+|+.++.+-+.+++|+ .++.|..|+.++....++..+. ++ .+..+..++..+.|-
T Consensus 128 l~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~--~~-~~~~~~~l~~~~~g~ 183 (313)
T PRK05564 128 LLCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYN--DI-KEEEKKSAIAFSDGI 183 (313)
T ss_pred EEeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhc--CC-CHHHHHHHHHHcCCC
Confidence 66678899999999999 7899999999998888876543 22 233355666666663
No 190
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.01 E-value=2.2e-09 Score=124.71 Aligned_cols=138 Identities=28% Similarity=0.454 Sum_probs=94.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccc--hhccCccHHHHH------------HHHHHHHhcCCeEEEEc
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--SKWFGEGEKYVK------------AVFSLASKIAPSVIFVD 1036 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~--s~~~Ge~e~~v~------------~lF~~A~k~~PsIIfID 1036 (1267)
+++||.||||||||+||+++|..++.+|+.+.|...+ ++.+|...-... -+|.... +|+|+|
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~D 119 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLD 119 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEe
Confidence 5799999999999999999999999999999986432 122232211110 0111111 499999
Q ss_pred cchhhhcCCCCCchHHHHHHHHHhhhhhccCCc-ccCCCcEEEEEecC-----CCCCCcHHHHhcccccccCCCC-CHHH
Q 000823 1037 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDTERILVLAATN-----RPFDLDEAVIRRLPRRLMVNLP-DAPN 1109 (1267)
Q Consensus 1037 EID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~-~~~~~~VlVIaTTN-----~p~~Ld~aLlrRFd~vI~~~~P-d~ee 1109 (1267)
||++. .+..+.++..++++....+.+.. ..-+..++||+|+| ....+++++++||...+.++.| +.++
T Consensus 120 EInra-----~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e 194 (329)
T COG0714 120 EINRA-----PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEE 194 (329)
T ss_pred ccccC-----CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHH
Confidence 99854 44445555555555544555555 44457899999999 4567899999999989999999 4444
Q ss_pred HHHHHHHH
Q 000823 1110 RAKILQVI 1117 (1267)
Q Consensus 1110 R~eIL~~l 1117 (1267)
...++...
T Consensus 195 ~~~i~~~~ 202 (329)
T COG0714 195 ERIILARV 202 (329)
T ss_pred HHHHHHhC
Confidence 55444443
No 191
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.00 E-value=4.5e-09 Score=130.73 Aligned_cols=144 Identities=19% Similarity=0.290 Sum_probs=91.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CceEEeeccccchhccCccH--HHHH-H--HHH--HHHhcCCeEEEEccchh
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGE--KYVK-A--VFS--LASKIAPSVIFVDEVDS 1040 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~elg--~~fi~I~~seL~s~~~Ge~e--~~v~-~--lF~--~A~k~~PsIIfIDEID~ 1040 (1267)
.++|||.|+||||||++|++++..+. .+|+.+.........+|... ..+. . .|. ...+...+|||||||+.
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 57899999999999999999999885 46888876433333444321 0000 0 000 00112236999999998
Q ss_pred hhcCCCCCchHHHHHHHHHhhhhhc--cCCcccCCCcEEEEEecCCCC---CCcHHHHhcccccccCC-CCCHHHHHHHH
Q 000823 1041 MLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATNRPF---DLDEAVIRRLPRRLMVN-LPDAPNRAKIL 1114 (1267)
Q Consensus 1041 L~~~r~~~~~~~~~~~il~eLL~~l--dgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd~vI~~~-~Pd~eeR~eIL 1114 (1267)
+- ...+..+..++++-...+ +|.....+.++.||+|+|..+ .|.++++.||...+.+. .|+.++|.+|+
T Consensus 96 l~-----~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil 170 (589)
T TIGR02031 96 LD-----DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIV 170 (589)
T ss_pred CC-----HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHH
Confidence 82 222222222222211111 133333346789999999865 79999999999877764 56888899999
Q ss_pred HHHH
Q 000823 1115 QVIL 1118 (1267)
Q Consensus 1115 ~~ll 1118 (1267)
+..+
T Consensus 171 ~~~~ 174 (589)
T TIGR02031 171 RRER 174 (589)
T ss_pred HHHH
Confidence 9876
No 192
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1e-08 Score=120.08 Aligned_cols=185 Identities=17% Similarity=0.146 Sum_probs=120.1
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------eEE-e--
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------FIN-I-- 1001 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------fi~-I-- 1001 (1267)
..++++.|++.+++.|...+.. .+-+..+||+||+|+|||++|+++|+.+.+. ... .
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~-------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYRE-------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHc-------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 4788999999999999998863 2234579999999999999999999998541 100 0
Q ss_pred -ecc-----------ccc--hhccCc---------cHHHHHHHHHHHH----hcCCeEEEEccchhhhcCCCCCchHHHH
Q 000823 1002 -SMS-----------SIT--SKWFGE---------GEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAM 1054 (1267)
Q Consensus 1002 -~~s-----------eL~--s~~~Ge---------~e~~v~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~~~~ 1054 (1267)
.|. ++. ....+. .-..++.+.+... .....||+|||+|.|-
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------ 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------ 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------
Confidence 110 110 000000 1123344333322 2245699999999882
Q ss_pred HHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHH
Q 000823 1055 RKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIAN 1134 (1267)
Q Consensus 1055 ~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~ 1134 (1267)
....+.|+..++.. +.+.++|..|+.+..+.+.+++|+ ..+.|+.|+.++..++++......++ .+..+..+++
T Consensus 155 ~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~~-~~~~~~~i~~ 228 (351)
T PRK09112 155 RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQGS-DGEITEALLQ 228 (351)
T ss_pred HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccCC-CHHHHHHHHH
Confidence 23344555555542 345566666788888889999999 79999999999999999885433332 1333667788
Q ss_pred HcCCCCHHHHHHHH
Q 000823 1135 MTDGYSGSDLKVIF 1148 (1267)
Q Consensus 1135 ~TeGySg~DL~~Lv 1148 (1267)
.+.| +++....++
T Consensus 229 ~s~G-~pr~Al~ll 241 (351)
T PRK09112 229 RSKG-SVRKALLLL 241 (351)
T ss_pred HcCC-CHHHHHHHH
Confidence 8877 444333343
No 193
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.99 E-value=9.7e-09 Score=109.65 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=98.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------eEEeeccccchhccCccHHHHHHHHHH
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 1024 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~elg~~------------------------fi~I~~seL~s~~~Ge~e~~v~~lF~~ 1024 (1267)
.+..+||+||+|+|||++|+++++.+... +..+... +.. ..-..++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHHH
Confidence 34679999999999999999999998432 1222111 000 122455556666
Q ss_pred HHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccc
Q 000823 1025 ASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRL 1100 (1267)
Q Consensus 1025 A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI 1100 (1267)
+... ...||+|||+|.|. ....+.|+..++.. +...++|.+|+.+..+.+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~------------~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN------------EAAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhC------------HHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 5543 35799999999883 22344566666553 235666677777789999999999 689
Q ss_pred cCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCC
Q 000823 1101 MVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDG 1138 (1267)
Q Consensus 1101 ~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeG 1138 (1267)
.|..|+.++..++++.. +++ +..+..|+..+.|
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 99999999998888776 343 3446777777766
No 194
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.9e-09 Score=119.53 Aligned_cols=131 Identities=23% Similarity=0.367 Sum_probs=83.3
Q ss_pred ccccHHHHHHHHHHHhCccCchhhhhc-CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch-hccCcc
Q 000823 937 IGALENVKDTLKELVMLPLQRPELFCK-GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG 1014 (1267)
Q Consensus 937 I~Gle~vk~~L~e~V~~pl~~~e~f~~-~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s-~~~Ge~ 1014 (1267)
++|++..|+.|.-.|....++...... ..+.-...+|||.||+|+|||.||+.+|+.++.||..-++..|.. .|+|+.
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED 142 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED 142 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence 456666666655444433222211111 111122357999999999999999999999999999999988854 688886
Q ss_pred H-HHHHHHHHHH----HhcCCeEEEEccchhhhcCCCCCchHH--HHHHHHHhhhhhccC
Q 000823 1015 E-KYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPGEHE--AMRKMKNEFMVNWDG 1067 (1267)
Q Consensus 1015 e-~~v~~lF~~A----~k~~PsIIfIDEID~L~~~r~~~~~~~--~~~~il~eLL~~ldg 1067 (1267)
- ..+.+++..| .+.+..||||||||.+..+..++.-.. .-.-+.+.|+..+.|
T Consensus 143 VENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 143 VENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred HHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence 4 4445555443 344568999999999986654432111 112455556666554
No 195
>PRK09087 hypothetical protein; Validated
Probab=98.97 E-value=1.6e-08 Score=111.69 Aligned_cols=137 Identities=18% Similarity=0.209 Sum_probs=92.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCch
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1050 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~ 1050 (1267)
..++|+||+|+|||+|+++++...+..++ +..++... ++..... .+|+|||++.+. ..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~------~~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGSD-----------AANAAAE---GPVLIEDIDAGG------FD 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcchH-----------HHHhhhc---CeEEEECCCCCC------CC
Confidence 35999999999999999999988765533 33222211 1111111 589999999662 12
Q ss_pred HHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC---CCcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhCCCC-
Q 000823 1051 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS- 1124 (1267)
Q Consensus 1051 ~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd--~vI~~~~Pd~eeR~eIL~~ll~k~~l~- 1124 (1267)
+..+-.+++.+. +.++.+||+++..|. ...+.+++||. .++.+..|+.++|.+|++..+...++.
T Consensus 103 ~~~lf~l~n~~~---------~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ETGLFHLINSVR---------QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HHHHHHHHHHHH---------hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 333444444443 124556666665553 23688999995 678899999999999999999887665
Q ss_pred CcccHHHHHHHcCC
Q 000823 1125 PDVDFDAIANMTDG 1138 (1267)
Q Consensus 1125 ~dvdl~~LA~~TeG 1138 (1267)
++..++.|+++..+
T Consensus 174 ~~ev~~~La~~~~r 187 (226)
T PRK09087 174 DPHVVYYLVSRMER 187 (226)
T ss_pred CHHHHHHHHHHhhh
Confidence 44457778887764
No 196
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.97 E-value=1.9e-08 Score=114.51 Aligned_cols=60 Identities=18% Similarity=0.361 Sum_probs=45.8
Q ss_pred EEEEecCC------------CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcC
Q 000823 1077 LVLAATNR------------PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTD 1137 (1267)
Q Consensus 1077 lVIaTTN~------------p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~Te 1137 (1267)
+||++||+ |+-++..++.|+ .+|...+++.++.++|++.....+++. .+.-++.|+..-.
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~ 394 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLDRL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGE 394 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhch
Confidence 55666775 778899999999 788999999999999999999887765 2333455555443
No 197
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=1.3e-08 Score=119.75 Aligned_cols=183 Identities=19% Similarity=0.184 Sum_probs=119.9
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceE-----------E
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI-----------N 1000 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi-----------~ 1000 (1267)
.++++|+|++.+++.|.+.+.. .+-+..+||+||+|+||+++|.++|+.+-+.-- .
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 4788999999999999988763 233467999999999999999999998832110 0
Q ss_pred e----ec-----------cccc--hh-ccCc--------cHHHHHHHHHHHH----hcCCeEEEEccchhhhcCCCCCch
Q 000823 1001 I----SM-----------SSIT--SK-WFGE--------GEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGE 1050 (1267)
Q Consensus 1001 I----~~-----------seL~--s~-~~Ge--------~e~~v~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~ 1050 (1267)
+ .| +++. .. +.+. .-..|+.+...+. ...+.||+|||+|.+-
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 0 00 1110 00 0010 1223455444433 2357899999999772
Q ss_pred HHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHH
Q 000823 1051 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFD 1130 (1267)
Q Consensus 1051 ~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~ 1130 (1267)
....+.|+..++.. ....++|.+|+.++.+.+.+++|+ ..+.|+.|+.++..+++...... ..+..+.
T Consensus 155 ----~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~ 222 (365)
T PRK07471 155 ----ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPRA 222 (365)
T ss_pred ----HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHHH
Confidence 23445555555542 345677888888989999999999 78999999999999988775321 1222235
Q ss_pred HHHHHcCCCCHHHHHHHH
Q 000823 1131 AIANMTDGYSGSDLKVIF 1148 (1267)
Q Consensus 1131 ~LA~~TeGySg~DL~~Lv 1148 (1267)
.++..+.| ++.....++
T Consensus 223 ~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 223 ALAALAEG-SVGRALRLA 239 (365)
T ss_pred HHHHHcCC-CHHHHHHHh
Confidence 67778877 444333333
No 198
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.95 E-value=9.8e-09 Score=123.15 Aligned_cols=249 Identities=15% Similarity=0.135 Sum_probs=126.8
Q ss_pred ccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--ceEEeecc-ccchhccCc
Q 000823 937 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMS-SITSKWFGE 1013 (1267)
Q Consensus 937 I~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~--~fi~I~~s-eL~s~~~Ge 1013 (1267)
+.|.+++.+.+...+.. ..++||+||||||||++|++++..++. +|..+.+. ......+|.
T Consensus 22 i~gre~vI~lll~aala----------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 22 LYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred ccCcHHHHHHHHHHHcc----------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 45667777666555431 258999999999999999999998742 44433332 111233332
Q ss_pred c-HHHH--HHHHHHHHhc---CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC-
Q 000823 1014 G-EKYV--KAVFSLASKI---APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF- 1086 (1267)
Q Consensus 1014 ~-e~~v--~~lF~~A~k~---~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~- 1086 (1267)
. -... ...|....+. ...|||+|||..+ ++..+..+-.++++-....++-...-+.++++++| |...
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT-N~LPE 159 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS-NELPE 159 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccC-----CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC-CCCcc
Confidence 1 0000 1122211111 1249999999855 33333333333333222222222222334555554 6432
Q ss_pred --CCcHHHHhcccccccCCCCC-HHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhh
Q 000823 1087 --DLDEAVIRRLPRRLMVNLPD-APNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLW 1163 (1267)
Q Consensus 1087 --~Ld~aLlrRFd~vI~~~~Pd-~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l 1163 (1267)
...+++..||-..+.+++|+ .++-.+++......... .... ....+..|+..+...+. .+ .+
T Consensus 160 ~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~--~~~~------~~vis~eel~~lq~~v~---~V----~v 224 (498)
T PRK13531 160 ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDN--PVPA------SLQITDEEYQQWQKEIG---KI----TL 224 (498)
T ss_pred cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccC--CCcc------cCCCCHHHHHHHHHHhc---ce----eC
Confidence 34468999998889999997 45657777653211000 0000 11245555553322221 11 12
Q ss_pred hhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhccc
Q 000823 1164 SDWLLVYLIVLQNLCVTAA---HRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCAS 1234 (1267)
Q Consensus 1164 ~~~i~~~l~~l~~Lc~~Aa---~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS 1234 (1267)
.+.+..|+..+...++... ...-|+.+...+..++.|...|+ ..|+.+|+. .+..+...
T Consensus 225 ~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR-----------~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 225 PDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGR-----------DAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCC-----------CCCCHHHHH-HhHHHhcc
Confidence 3445555555544332111 12234444445556667777766 678888888 55444433
No 199
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.95 E-value=4.9e-10 Score=113.40 Aligned_cols=112 Identities=26% Similarity=0.404 Sum_probs=69.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch--hccCccHHH------HHHHHHHHHhcCCeEEEEccchhhhc
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFGEGEKY------VKAVFSLASKIAPSVIFVDEVDSMLG 1043 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s--~~~Ge~e~~------v~~lF~~A~k~~PsIIfIDEID~L~~ 1043 (1267)
+|||+||||||||+||+.+|+.++.+++.+.+..... +.+|...-. ....+..+.+ .+.|+|||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 5899999999999999999999999999988865311 111111000 0000011111 4689999999955
Q ss_pred CCCCCchHHHHHHHHHhhhhhccCCccc---------CCC------cEEEEEecCCCC----CCcHHHHhcc
Q 000823 1044 RRENPGEHEAMRKMKNEFMVNWDGLRTK---------DTE------RILVLAATNRPF----DLDEAVIRRL 1096 (1267)
Q Consensus 1044 ~r~~~~~~~~~~~il~eLL~~ldgl~~~---------~~~------~VlVIaTTN~p~----~Ld~aLlrRF 1096 (1267)
...+++.|+..++.-... ... ++.+|+|+|... .+++++++||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 134444454444432111 011 389999999988 9999999998
No 200
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.92 E-value=5e-09 Score=102.18 Aligned_cols=127 Identities=33% Similarity=0.463 Sum_probs=82.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc---eEEeeccccchh--------------ccCccHHHHHHHHHHHHhcCCeEE
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSK--------------WFGEGEKYVKAVFSLASKIAPSVI 1033 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~---fi~I~~seL~s~--------------~~Ge~e~~v~~lF~~A~k~~PsII 1033 (1267)
..++|+||||||||++++++|..+... ++.+++...... ...........++..++...+.||
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999664 888887654321 123345567788999998888999
Q ss_pred EEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC-CCCCcHHHHhcccccccCCCC
Q 000823 1034 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-PFDLDEAVIRRLPRRLMVNLP 1105 (1267)
Q Consensus 1034 fIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~-p~~Ld~aLlrRFd~vI~~~~P 1105 (1267)
||||++.+.... ................ ........+|+++|. ....+..+..|++..+.+..+
T Consensus 83 iiDei~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAE-----QEALLLLLEELRLLLL---LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHH-----HHHHHHhhhhhHHHHH---HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999885321 1110000000000000 011346788888886 444555566688777776544
No 201
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=9.2e-09 Score=128.69 Aligned_cols=164 Identities=21% Similarity=0.368 Sum_probs=125.0
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEEee
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1002 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el----------g~~fi~I~ 1002 (1267)
.++-++|-++-++++.+.+.. +..++-+|.|+||+|||.++..+|... +..++.++
T Consensus 168 klDPvIGRd~EI~r~iqIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 445567888777777776652 222456899999999999999999876 56789999
Q ss_pred ccccch--hccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCch-HHHHHHHHHhhhhhccCCcccCCCcEEEE
Q 000823 1003 MSSITS--KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDTERILVL 1079 (1267)
Q Consensus 1003 ~seL~s--~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~-~~~~~~il~eLL~~ldgl~~~~~~~VlVI 1079 (1267)
+..++. +|-|+.|..++.+.....+..+.|||||||+.+.+.....+. -.+.+ ++...+ ..+.+-+|
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaN-iLKPaL---------ARGeL~~I 303 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAAN-LLKPAL---------ARGELRCI 303 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhh-hhHHHH---------hcCCeEEE
Confidence 988854 688999999999999999999999999999999876554332 22222 222221 13557777
Q ss_pred EecCC-----CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhC
Q 000823 1080 AATNR-----PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE 1121 (1267)
Q Consensus 1080 aTTN~-----p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~ 1121 (1267)
++|.- .-.-|++|-||| ..|.+..|+.++-..||+-+-.+.
T Consensus 304 GATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~y 349 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERY 349 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHH
Confidence 77753 345688999999 789999999999999999887664
No 202
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=1.5e-08 Score=117.11 Aligned_cols=182 Identities=13% Similarity=0.185 Sum_probs=122.1
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------eEEee
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------FINIS 1002 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~----------fi~I~ 1002 (1267)
.|+++.|++.+++.|.+.+.. + +-+..+||+||+|+||+++|.++|+.+-+. +...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~----------~---rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ----------N---RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh----------C---CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 478999999999999998863 2 234689999999999999999999987321 11222
Q ss_pred ccccc---------hhc--------cC--------ccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHH
Q 000823 1003 MSSIT---------SKW--------FG--------EGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEA 1053 (1267)
Q Consensus 1003 ~seL~---------s~~--------~G--------e~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~ 1053 (1267)
.+++. ++. .| -.-..++.+...+... ...|++||++|.|-
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~----------- 137 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN----------- 137 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------
Confidence 22221 100 00 0012455565555433 35799999999882
Q ss_pred HHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHH
Q 000823 1054 MRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIA 1133 (1267)
Q Consensus 1054 ~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA 1133 (1267)
....|.|+..++.. + +.++|.+|+.++.|-+.+++|+ ..+.|+.|+.++..++|......... +.+...++
T Consensus 138 -~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 138 -EAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred -HHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 23344555555543 2 4466777788999999999999 88999999999999999876533221 22357888
Q ss_pred HHcCCCCHHHHHHHH
Q 000823 1134 NMTDGYSGSDLKVIF 1148 (1267)
Q Consensus 1134 ~~TeGySg~DL~~Lv 1148 (1267)
....| +++....++
T Consensus 209 ~~a~G-s~~~al~~l 222 (314)
T PRK07399 209 ALAQG-SPGAAIANI 222 (314)
T ss_pred HHcCC-CHHHHHHHH
Confidence 88888 444444333
No 203
>PRK04132 replication factor C small subunit; Provisional
Probab=98.90 E-value=9.8e-09 Score=130.63 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=117.2
Q ss_pred CCCceEEEEc--CCCChHHHHHHHHHHHh-----CCceEEeeccccchhccCccHHHHHHHHHHHHhcC------CeEEE
Q 000823 968 KPCKGILLFG--PPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA------PSVIF 1034 (1267)
Q Consensus 968 kP~~gVLL~G--PpGTGKT~LAkALA~el-----g~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~------PsIIf 1034 (1267)
-|.-+-++.| |++.|||++|++||+++ +.+++.+++++..+ -..++.+...+.... ..|||
T Consensus 562 ~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 562 VPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred cCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 3445567778 99999999999999998 56899999987432 234555554443222 36999
Q ss_pred EccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHH
Q 000823 1035 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKIL 1114 (1267)
Q Consensus 1035 IDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL 1114 (1267)
|||+|.|- .. ..+.|+..|+.. +.++.+|++||.+..+.+++++|+ ..+.|+.|+.++...+|
T Consensus 636 IDEaD~Lt-----~~-------AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 636 LDEADALT-----QD-------AQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred EECcccCC-----HH-------HHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHH
Confidence 99999882 22 233344444432 457889999999999999999999 88999999999999999
Q ss_pred HHHHhhCCCC-CcccHHHHHHHcCCCCHHHHHHHHhhhhh
Q 000823 1115 QVILAKEDLS-PDVDFDAIANMTDGYSGSDLKVIFLSHSL 1153 (1267)
Q Consensus 1115 ~~ll~k~~l~-~dvdl~~LA~~TeGySg~DL~~Lv~~a~l 1153 (1267)
+.++.++++. ++..+..|+..++| |++.++...+.
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~G----DlR~AIn~Lq~ 734 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEG----DMRRAINILQA 734 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHH
Confidence 9999887765 45567888888887 44444444433
No 204
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.88 E-value=1.5e-08 Score=120.68 Aligned_cols=122 Identities=23% Similarity=0.310 Sum_probs=76.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--c-----eEEeecc----ccchhc----cCcc--HHHHHHHHHHHHhc--CCe
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGA--N-----FINISMS----SITSKW----FGEG--EKYVKAVFSLASKI--APS 1031 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~--~-----fi~I~~s----eL~s~~----~Ge~--e~~v~~lF~~A~k~--~Ps 1031 (1267)
++++|+||||||||++|+++|..+.. . ++.+... +++..+ .|.. .+.+..+...|... .|.
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~ 274 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKY 274 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCc
Confidence 58999999999999999999998842 1 2222221 222111 1100 12334455666654 479
Q ss_pred EEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCC------------------cccCCCcEEEEEecCCCC----CCc
Q 000823 1032 VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL------------------RTKDTERILVLAATNRPF----DLD 1089 (1267)
Q Consensus 1032 IIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl------------------~~~~~~~VlVIaTTN~p~----~Ld 1089 (1267)
|||||||++-- ..+++.++++.++.- ...-+.++.||||+|..+ .+|
T Consensus 275 vliIDEINRan-----------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD 343 (459)
T PRK11331 275 VFIIDEINRAN-----------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVD 343 (459)
T ss_pred EEEEehhhccC-----------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhcc
Confidence 99999998541 134444445444311 012257899999999876 899
Q ss_pred HHHHhcccccccCCC
Q 000823 1090 EAVIRRLPRRLMVNL 1104 (1267)
Q Consensus 1090 ~aLlrRFd~vI~~~~ 1104 (1267)
.+++||| ..|.+.+
T Consensus 344 ~AlrRRF-~fi~i~p 357 (459)
T PRK11331 344 YALRRRF-SFIDIEP 357 (459)
T ss_pred HHHHhhh-heEEecC
Confidence 9999999 4555543
No 205
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.87 E-value=2.1e-08 Score=114.89 Aligned_cols=147 Identities=20% Similarity=0.292 Sum_probs=98.5
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------------------
Q 000823 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------------------- 995 (1267)
Q Consensus 936 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg-------------------- 995 (1267)
++.+.+.....+...+.. .+ +-+..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~---------~~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE---------SG---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHh---------cC---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 455666666666666652 11 1223599999999999999999999996
Q ss_pred ----CceEEeeccccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccC
Q 000823 996 ----ANFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1067 (1267)
Q Consensus 996 ----~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldg 1067 (1267)
..|+.++.++..... .....++.+-+..... +..||+|||+|.|. ....+.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt------------~~A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT------------EDAANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh------------HHHHHHHHHHhcc
Confidence 467777776643321 1233455544444333 35799999999883 2333444444433
Q ss_pred CcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHH
Q 000823 1068 LRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKI 1113 (1267)
Q Consensus 1068 l~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eI 1113 (1267)
.+.+..+|.+||.+..+-+.+++|+ ..+.|..|+...+...
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAW 176 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHH
Confidence 3567889999999999999999999 7788877554444433
No 206
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.87 E-value=1.6e-08 Score=120.99 Aligned_cols=184 Identities=21% Similarity=0.295 Sum_probs=118.9
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccc--
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-- 1007 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~-- 1007 (1267)
...+++|.....+++.+.+.. . ......|||+|++||||..+|++|-... +.||+.|+|..+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~k-------v-----A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAK-------V-----APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 456788988888888887753 1 1223579999999999999999998766 6799999997652
Q ss_pred ---hhccCccH----HHHH---HHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEE
Q 000823 1008 ---SKWFGEGE----KYVK---AVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERIL 1077 (1267)
Q Consensus 1008 ---s~~~Ge~e----~~v~---~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~Vl 1077 (1267)
+..+|... +... ..|+.|.. +.||||||..| +...+..+-+++++--..--|....-+.+|-
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m-----pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM-----PLELQVKLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC-----CHHHHHHHHHHHHcCeeEecCCCcccceeeE
Confidence 22344322 2222 25666555 89999999987 3233444445554432222233333356889
Q ss_pred EEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhh----CCCC-CcccHHHHHHHcC
Q 000823 1078 VLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAK----EDLS-PDVDFDAIANMTD 1137 (1267)
Q Consensus 1078 VIaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~eeR~e----IL~~ll~k----~~l~-~dvdl~~LA~~Te 1137 (1267)
||++||.. ..+-+.|..|+ .++.+..|...+|.+ ++++++.+ .+.. ..++-+.++.+..
T Consensus 279 iIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~ 353 (464)
T COG2204 279 IIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLA 353 (464)
T ss_pred EEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 99999974 35566777788 788999998888764 44444433 2222 3445555555443
No 207
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.85 E-value=1.6e-07 Score=105.19 Aligned_cols=192 Identities=15% Similarity=0.174 Sum_probs=112.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CceEEee--c-----ccc---chhccCcc-----H-HHHHHHH----HHHHhcC
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAG-ANFINIS--M-----SSI---TSKWFGEG-----E-KYVKAVF----SLASKIA 1029 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg-~~fi~I~--~-----seL---~s~~~Ge~-----e-~~v~~lF----~~A~k~~ 1029 (1267)
..++|+||+|+|||++++.+++.+. ..++.+. . .++ +....|.. . .....+. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4689999999999999999999885 2222211 1 111 11111211 1 1122222 2233456
Q ss_pred CeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC--CCCC----cHHHHhcccccccCC
Q 000823 1030 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR--PFDL----DEAVIRRLPRRLMVN 1103 (1267)
Q Consensus 1030 PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~--p~~L----d~aLlrRFd~vI~~~ 1103 (1267)
+.||+|||++.+. ... ...+..+... .......+.|+.+... ...+ ...+.+|+...++++
T Consensus 124 ~~vliiDe~~~l~--------~~~-~~~l~~l~~~----~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLT--------PEL-LEELRMLSNF----QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCC--------HHH-HHHHHHHhCc----ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 7899999999772 111 1112222111 1111222333343322 1111 134666887889999
Q ss_pred CCCHHHHHHHHHHHHhhCCC-----CCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhhHHHHHHHHHHHHH
Q 000823 1104 LPDAPNRAKILQVILAKEDL-----SPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDWLLVYLIVLQNLC 1178 (1267)
Q Consensus 1104 ~Pd~eeR~eIL~~ll~k~~l-----~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~~i~~~l~~l~~Lc 1178 (1267)
..+.++..+++...+...+. -.+..++.|.+.+.|+. +.|. .+|
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~------------------------------~l~ 239 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLIN------------------------------ILC 239 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHH------------------------------HHH
Confidence 99999999999998875432 13345778888898864 4466 677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhc
Q 000823 1179 VTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1232 (1267)
Q Consensus 1179 ~~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~ 1232 (1267)
..+...+..+ +...|+.+++.+|+..++
T Consensus 240 ~~~~~~a~~~--------------------------~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 240 DRLLLSAFLE--------------------------EKREIGGEEVREVIAEID 267 (269)
T ss_pred HHHHHHHHHc--------------------------CCCCCCHHHHHHHHHHhh
Confidence 7666555432 235799999999998876
No 208
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=98.84 E-value=4.5e-09 Score=124.73 Aligned_cols=83 Identities=20% Similarity=0.414 Sum_probs=72.2
Q ss_pred cceeeeCCeeEEcCCCCcceeecCCC--CccceEEEEEEecCCceEEEEEEecCCceEEc--CeeecCCCeeEccCCCEE
Q 000823 138 SNVPICASIFTVGSSRQCNFPLKDQA--ISAVLCKIKHVQSEGSAVAMVESIGSKGLQVN--GKNLKKNTSCELRSGDEV 213 (1267)
Q Consensus 138 ~~l~i~~~~~tvGr~~~Cd~~l~~~~--~s~~~c~i~~~~~~~~~~~~Led~s~nGt~VN--g~~~gk~~~~~L~~gDeI 213 (1267)
..+.+....++|||+.+||++|.+.. ||..||+|... ++ .+||+|+|+|||||| |..|+++..+.|+.||+|
T Consensus 17 ~~~~f~~~~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~--~g--~~~l~DlStNGT~VN~sg~~l~~~~~~~L~~GD~I 92 (396)
T TIGR03354 17 AQKTFGTNGGTIGRSEDCDWVLPDPERHVSGRHARIRYR--DG--AYLLTDLSTNGVFLNGSGSPLGRGNPVRLEQGDRL 92 (396)
T ss_pred eEEEECCCCEEEecCCCCCEEeCCCCCCcchhhcEEEEE--CC--EEEEEECCCCCeEECCCCCCCCCCCceEcCCCCEE
Confidence 46677788999999999999999998 99999999965 23 479999999999999 999999999999999999
Q ss_pred EEeecCCeEEE
Q 000823 214 VFGSLGNHAYI 224 (1267)
Q Consensus 214 ~f~~~~~~ayi 224 (1267)
.|+...-++++
T Consensus 93 ~iG~~~lrv~~ 103 (396)
T TIGR03354 93 RLGDYEIRVSL 103 (396)
T ss_pred EECCEEEEEEe
Confidence 99876544443
No 209
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=5.9e-09 Score=123.23 Aligned_cols=48 Identities=38% Similarity=0.538 Sum_probs=40.4
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000823 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 994 (1267)
Q Consensus 931 ~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el 994 (1267)
...|.|+.|++..|+.|...... + +++|++||||||||+||+.+...+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG-----------g-----HnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG-----------G-----HNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc-----------C-----CcEEEecCCCCchHHhhhhhcccC
Confidence 45799999999999999876642 2 689999999999999999886544
No 210
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.84 E-value=5.4e-08 Score=121.50 Aligned_cols=51 Identities=31% Similarity=0.441 Sum_probs=42.8
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 000823 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 997 (1267)
Q Consensus 931 ~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~ 997 (1267)
..-++++.|++++++.++..+.. ..+++|+||||||||++++++|+.++..
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 35678999999999988887752 1389999999999999999999998543
No 211
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.83 E-value=2e-09 Score=116.54 Aligned_cols=45 Identities=42% Similarity=0.599 Sum_probs=37.0
Q ss_pred chhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000823 934 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 994 (1267)
Q Consensus 934 ~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el 994 (1267)
|.||.|++.+|..|.-.... ..++||+||||||||++|+++...+
T Consensus 2 f~dI~GQe~aKrAL~iAAaG----------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG----------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC----------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHcC----------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 67999999999999877652 1589999999999999999998766
No 212
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=7.3e-08 Score=112.11 Aligned_cols=150 Identities=19% Similarity=0.260 Sum_probs=102.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------eEEeeccccchhccCccHHHHHHHHHH
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 1024 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~elg~~------------------------fi~I~~seL~s~~~Ge~e~~v~~lF~~ 1024 (1267)
.+..+||+||+|+|||++|+++|+.+.+. ++.+...+ .++ .-.-..++.+.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~-~~~--~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE-ADK--TIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC-CCC--CCCHHHHHHHHHH
Confidence 44689999999999999999999998542 12221100 000 0123456666655
Q ss_pred HHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccc
Q 000823 1025 ASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRL 1100 (1267)
Q Consensus 1025 A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI 1100 (1267)
+... ...|++||++|.|- ....|.|+..++. ++.++++|.+|+.++.|.+.+++|+ ..+
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~ll~TI~SRc-~~~ 160 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEE----PSGDTVLLLISHQPSRLLPTIKSRC-QQQ 160 (328)
T ss_pred HhhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhC----CCCCeEEEEEECChhhCcHHHHhhc-eee
Confidence 5443 35699999999883 3344556555555 2467888999999999999999999 679
Q ss_pred cCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCH
Q 000823 1101 MVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSG 1141 (1267)
Q Consensus 1101 ~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg 1141 (1267)
.|..|+.++..+.|..... ...+.+...++....|--+
T Consensus 161 ~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALP---ESDERERIELLTLAGGSPL 198 (328)
T ss_pred eCCCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCHH
Confidence 9999999998888876431 1223345566777777333
No 213
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.82 E-value=1.1e-08 Score=124.49 Aligned_cols=152 Identities=24% Similarity=0.317 Sum_probs=86.3
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----CceEEeec-----
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISM----- 1003 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg----~~fi~I~~----- 1003 (1267)
.|.++.|...+++.+.-.+ ....+++|+||+|+|||+|++.++..+. -..+.+..
T Consensus 189 d~~~v~Gq~~~~~al~laa----------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITA----------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred CeEEEECcHHHHhhhheec----------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 5677888776666543221 1235899999999999999999987652 11111111
Q ss_pred -c-----ccc-------------hhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhh
Q 000823 1004 -S-----SIT-------------SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1064 (1267)
Q Consensus 1004 -s-----eL~-------------s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ 1064 (1267)
. .+. ...+|.....-...+..|.. .+||||||+.+ ....+..+.+.+++-...
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----~~~~~~~L~~~LE~g~v~ 324 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----ERRTLDALREPIESGQIH 324 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----CHHHHHHHHHHHHcCcEE
Confidence 0 000 00111111111123444444 89999999876 211222222222211111
Q ss_pred cc--CCcccCCCcEEEEEecCCCC---------------------CCcHHHHhcccccccCCCCCHH
Q 000823 1065 WD--GLRTKDTERILVLAATNRPF---------------------DLDEAVIRRLPRRLMVNLPDAP 1108 (1267)
Q Consensus 1065 ld--gl~~~~~~~VlVIaTTN~p~---------------------~Ld~aLlrRFd~vI~~~~Pd~e 1108 (1267)
+. +.....+.++.+|+|+|... .|...+++|||..+.++.|+.+
T Consensus 325 I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 325 LSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 11 11112346899999999742 4777999999999999988876
No 214
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.81 E-value=6.2e-08 Score=120.65 Aligned_cols=199 Identities=14% Similarity=0.175 Sum_probs=120.3
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEe-ecc---ccc
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI-SMS---SIT 1007 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I-~~s---eL~ 1007 (1267)
.+++|+.+.++..+.|+.++..... ...+..-++|+||||+|||++++.+|++++..++++ +.. ...
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~---------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVL---------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhccc---------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 5789999999999999888763211 022334599999999999999999999998766552 111 000
Q ss_pred ---------hhcc---CccHHHHHHHHHHHHh----------cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhc
Q 000823 1008 ---------SKWF---GEGEKYVKAVFSLASK----------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1065 (1267)
Q Consensus 1008 ---------s~~~---Ge~e~~v~~lF~~A~k----------~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~l 1065 (1267)
...+ ......+..++..+.. ....|||||||+.++.. ...+...++... ..
T Consensus 152 ~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----~~~~lq~lLr~~--~~ 224 (637)
T TIGR00602 152 NDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----DTRALHEILRWK--YV 224 (637)
T ss_pred cccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----hHHHHHHHHHHH--hh
Confidence 0001 1112333444444431 24579999999987532 112223332200 11
Q ss_pred cCCcccCCCcEEEEEecCCCC--------------CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCC--C--
Q 000823 1066 DGLRTKDTERILVLAATNRPF--------------DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLS--P-- 1125 (1267)
Q Consensus 1066 dgl~~~~~~~VlVIaTTN~p~--------------~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~--~-- 1125 (1267)
+ ...-.+|+++|..+. .|.+++++ |. .+|.|++.+..+..+.|+.++..+... .
T Consensus 225 e-----~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~ 298 (637)
T TIGR00602 225 S-----IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKI 298 (637)
T ss_pred c-----CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccccc
Confidence 1 112223333332221 14478886 55 579999999999999999998875321 1
Q ss_pred ----cccHHHHHHHcCCCCHHHHHHHHhhhhhHHH
Q 000823 1126 ----DVDFDAIANMTDGYSGSDLKVIFLSHSLICN 1156 (1267)
Q Consensus 1126 ----dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~ 1156 (1267)
...+..|+.. +.+|++.+|...++++.
T Consensus 299 ~~p~~~~l~~I~~~----s~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 299 KVPKKTSVELLCQG----CSGDIRSAINSLQFSSS 329 (637)
T ss_pred ccCCHHHHHHHHHh----CCChHHHHHHHHHHHHh
Confidence 1245556554 45699999998888754
No 215
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.5e-08 Score=114.44 Aligned_cols=73 Identities=32% Similarity=0.590 Sum_probs=61.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccc-hhccCcc-HHHHHHHHHHH----HhcCCeEEEEccchhhhc
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGEG-EKYVKAVFSLA----SKIAPSVIFVDEVDSMLG 1043 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~-s~~~Ge~-e~~v~~lF~~A----~k~~PsIIfIDEID~L~~ 1043 (1267)
.+|||.||+|+|||.||+.||+.++.||.-.+|..|. ..|+|+. |..+.+++..| .+.+..|+||||+|.+..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 4799999999999999999999999999999999985 4688876 55666776665 344669999999999983
No 216
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.81 E-value=2.5e-09 Score=107.48 Aligned_cols=113 Identities=31% Similarity=0.442 Sum_probs=67.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEeecc-ccc-hhccCcc----HH-----HHHHHHHHHHhcCCeEEEEccchh
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAGANFINISMS-SIT-SKWFGEG----EK-----YVKAVFSLASKIAPSVIFVDEVDS 1040 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~s-eL~-s~~~Ge~----e~-----~v~~lF~~A~k~~PsIIfIDEID~ 1040 (1267)
++||.|+||+|||++|+++|+.++..|.+|.+. ++. ++..|.. .. .-.-+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999988763 331 1222211 00 001122 25999999985
Q ss_pred hhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC-----CCcHHHHhcc
Q 000823 1041 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF-----DLDEAVIRRL 1096 (1267)
Q Consensus 1041 L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~-----~Ld~aLlrRF 1096 (1267)
. .+..+.++-+++.+-...+++....-+.+++||||-|..+ .|++++++||
T Consensus 74 a-----ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 74 A-----PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp S------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred C-----CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 5 4555667777777766667776666678899999999864 7889999999
No 217
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=6.2e-08 Score=109.68 Aligned_cols=86 Identities=22% Similarity=0.405 Sum_probs=60.2
Q ss_pred CeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc------CCCcEEEEEec----CCCCCCcHHHHhccccc
Q 000823 1030 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DTERILVLAAT----NRPFDLDEAVIRRLPRR 1099 (1267)
Q Consensus 1030 PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~------~~~~VlVIaTT----N~p~~Ld~aLlrRFd~v 1099 (1267)
.+||||||||.++.+....+..-.-..+...+|-.+.|-... ....+++||+. ..|.+|-|+|.-||+.+
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIR 330 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIR 330 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceE
Confidence 459999999999866542221111123444455555543221 24678999886 46899999999999999
Q ss_pred ccCCCCCHHHHHHHHH
Q 000823 1100 LMVNLPDAPNRAKILQ 1115 (1267)
Q Consensus 1100 I~~~~Pd~eeR~eIL~ 1115 (1267)
+++...+.++-..||.
T Consensus 331 VEL~~Lt~~Df~rILt 346 (444)
T COG1220 331 VELDALTKEDFERILT 346 (444)
T ss_pred EEcccCCHHHHHHHHc
Confidence 9999999999888874
No 218
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.75 E-value=4.3e-08 Score=97.03 Aligned_cols=62 Identities=23% Similarity=0.367 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhhccCC-CeEEEEcchhhhhcCC--------cchhhHHHHHHhcCCC---cEEEEeecccCCCcccc
Q 000823 676 LINTLFEVVFSESRSC-PFILFMKDAEKSIAGN--------SDSYSTFKSRLEKLPD---KVIVIGSHTHTDNRKEK 740 (1267)
Q Consensus 676 ~i~~L~ev~~~~~~~~-p~ILfi~di~~~l~g~--------~~~~~~lk~~L~~l~g---~VvvIGst~~~d~~~~~ 740 (1267)
.+..+++.+.. .. |.||||||+|.+.... ....+.|...|++... +++|||++|..+..++.
T Consensus 45 ~i~~~~~~~~~---~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~ 118 (132)
T PF00004_consen 45 KIRDFFKKAKK---SAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPA 118 (132)
T ss_dssp HHHHHHHHHHH---TSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHH
T ss_pred ccccccccccc---cccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHh
Confidence 55555666655 54 9999999999988755 4556666666666654 69999999987644443
No 219
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=7.4e-08 Score=112.18 Aligned_cols=149 Identities=15% Similarity=0.118 Sum_probs=103.2
Q ss_pred cchhccc-cHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000823 933 TFDDIGA-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1267)
Q Consensus 933 t~~DI~G-le~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~-------------- 997 (1267)
.|+.|.| ++.+.+.|+..+.. .+.+..+||+||+|+||+++|+++|+.+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4778878 88899999888752 2344678999999999999999999987332
Q ss_pred ----------eEEeeccccchhccCccHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 998 ----------fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
+..+... +.. -.-..++.+.+.+.. ....|++|||+|.|- ....|.|+.
T Consensus 70 ~~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK 132 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLK 132 (329)
T ss_pred HHHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHH
Confidence 1111110 110 112344555444332 234699999999872 234455666
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHH
Q 000823 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQV 1116 (1267)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ 1116 (1267)
.++.. +..+++|.+|+.+..|-+.+++|+ .+++|..|+.++..++++.
T Consensus 133 ~LEEP----p~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEEP----SGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcCC----CCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 66553 456777778888889999999999 8899999999988777753
No 220
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.74 E-value=5.8e-08 Score=112.34 Aligned_cols=93 Identities=20% Similarity=0.324 Sum_probs=52.1
Q ss_pred CeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC------------CCCCcHHHHhccc
Q 000823 1030 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR------------PFDLDEAVIRRLP 1097 (1267)
Q Consensus 1030 PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~------------p~~Ld~aLlrRFd 1097 (1267)
|.||||||++.|- -.-..+++++++ . +-.+ +||.+||+ |.-++..|++|+
T Consensus 279 pGVLFIDEvHmLD-----iEcFsfLnralE-------s----~~sP-iiIlATNRg~~~irGt~~~sphGiP~DlLDRl- 340 (398)
T PF06068_consen 279 PGVLFIDEVHMLD-----IECFSFLNRALE-------S----ELSP-IIILATNRGITKIRGTDIISPHGIPLDLLDRL- 340 (398)
T ss_dssp E-EEEEESGGGSB-----HHHHHHHHHHHT-------S----TT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-
T ss_pred cceEEecchhhcc-----HHHHHHHHHHhc-------C----CCCc-EEEEecCceeeeccCccCcCCCCCCcchHhhc-
Confidence 6788888888771 111222223222 1 1223 55666665 578889999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCC
Q 000823 1098 RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 1140 (1267)
Q Consensus 1098 ~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGyS 1140 (1267)
.+|...+++.++..+|++..++.+++. .+.-++.|+....-.|
T Consensus 341 lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~S 384 (398)
T PF06068_consen 341 LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETS 384 (398)
T ss_dssp EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-
T ss_pred EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhcc
Confidence 889999999999999999999998876 2333555555444333
No 221
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.74 E-value=7.5e-08 Score=112.11 Aligned_cols=133 Identities=18% Similarity=0.266 Sum_probs=79.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchh-----ccCccHHH-------HHHHHHHHHhcCCeEEEE
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKY-------VKAVFSLASKIAPSVIFV 1035 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~-----~~Ge~e~~-------v~~lF~~A~k~~PsIIfI 1035 (1267)
..|||+|++||||+++|++|-... +.+|+.++|..+... .+|...+. ....|+.|. .++|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD---GGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC---CCEEEe
Confidence 479999999999999999997765 579999999865322 22211110 011244443 489999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHH
Q 000823 1036 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAP 1108 (1267)
Q Consensus 1036 DEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~e 1108 (1267)
|||+.|- ...+..+.++++.-...-.+.......++.||++|+.. ..+.+.|..|| ..+.+.+|...
T Consensus 100 dei~~L~-----~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl-~~~~i~lPpLR 173 (329)
T TIGR02974 100 DELATAS-----LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRL-AFDVITLPPLR 173 (329)
T ss_pred CChHhCC-----HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHh-cchhcCCCchh
Confidence 9999882 22222222222211100011111123567889998763 35667888888 34566777766
Q ss_pred HHHH
Q 000823 1109 NRAK 1112 (1267)
Q Consensus 1109 eR~e 1112 (1267)
+|.+
T Consensus 174 eR~e 177 (329)
T TIGR02974 174 ERQE 177 (329)
T ss_pred hhhh
Confidence 6643
No 222
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.73 E-value=3.2e-07 Score=101.88 Aligned_cols=190 Identities=19% Similarity=0.307 Sum_probs=129.8
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C--CceEEeecccc---
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G--ANFINISMSSI--- 1006 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el-g--~~fi~I~~seL--- 1006 (1267)
+++.+.+.++....|+.+... ....++|+|||+|+||-+.+.++.+++ | ..=+++...++
T Consensus 11 sl~~l~~~~e~~~~Lksl~~~--------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSST--------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred hhhhcccHHHHHHHHHHhccc--------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 556677777877777776541 122489999999999999999999988 3 22111111111
Q ss_pred ------------------chhccCccHH-HHHHHHHHHHhcC---------CeEEEEccchhhhcCCCCCchHHHHHHHH
Q 000823 1007 ------------------TSKWFGEGEK-YVKAVFSLASKIA---------PSVIFVDEVDSMLGRRENPGEHEAMRKMK 1058 (1267)
Q Consensus 1007 ------------------~s~~~Ge~e~-~v~~lF~~A~k~~---------PsIIfIDEID~L~~~r~~~~~~~~~~~il 1058 (1267)
.-.-.|.... .+..+.....+.+ ..|++|-|+|.|. ...+.++++.+
T Consensus 77 S~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT-----~dAQ~aLRRTM 151 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT-----RDAQHALRRTM 151 (351)
T ss_pred CCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh-----HHHHHHHHHHH
Confidence 1111233222 3344554443332 3699999999993 34566777777
Q ss_pred HhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcC
Q 000823 1059 NEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTD 1137 (1267)
Q Consensus 1059 ~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~Te 1137 (1267)
... ..++-+|..+|....+-+++++|+ ..|.++.|+.++...++...+.++++. +..-+..||+.++
T Consensus 152 EkY-----------s~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~ 219 (351)
T KOG2035|consen 152 EKY-----------SSNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSN 219 (351)
T ss_pred HHH-----------hcCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhc
Confidence 655 245677888999999999999998 789999999999999999999999876 3333566666655
Q ss_pred CCCHHHHHHHHhhhhhHHHH
Q 000823 1138 GYSGSDLKVIFLSHSLICNV 1157 (1267)
Q Consensus 1138 GySg~DL~~Lv~~a~l~~~v 1157 (1267)
++|+.++...+..+..
T Consensus 220 ----~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 220 ----RNLRRALLMLEAVRVN 235 (351)
T ss_pred ----ccHHHHHHHHHHHHhc
Confidence 5777666655555443
No 223
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.73 E-value=1.2e-07 Score=120.38 Aligned_cols=188 Identities=19% Similarity=0.204 Sum_probs=108.2
Q ss_pred HHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhh---cC----CCCCCCceEEEEcCCCChHHHHH
Q 000823 915 EFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFC---KG----QLTKPCKGILLFGPPGTGKTMLA 987 (1267)
Q Consensus 915 e~e~~li~~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~---~~----~~~kP~~gVLL~GPpGTGKT~LA 987 (1267)
++...++..+.| .|.|.+.+|+.|.-.+........... .+ ...+...+|||.|+||||||.+|
T Consensus 439 ~i~~~L~~SiaP---------~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLA 509 (915)
T PTZ00111 439 MIYRILLDSFAP---------SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLL 509 (915)
T ss_pred HHHHHHHHHhCC---------eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHH
Confidence 344446666665 688999999888666654332110000 00 11233358999999999999999
Q ss_pred HHHHHHhC-------CceEEeeccccchhccCc--cHHHH-HHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHH
Q 000823 988 KAVATEAG-------ANFINISMSSITSKWFGE--GEKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKM 1057 (1267)
Q Consensus 988 kALA~elg-------~~fi~I~~seL~s~~~Ge--~e~~v-~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~i 1057 (1267)
+++++... .++..+.+..... ..+. .+..+ ...+..| ..++++||||+.|- ...+.++..+
T Consensus 510 r~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkms-----~~~Q~aLlEa 580 (915)
T PTZ00111 510 HYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVLA---NGGVCCIDELDKCH-----NESRLSLYEV 580 (915)
T ss_pred HHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEEc---CCCeEEecchhhCC-----HHHHHHHHHH
Confidence 99998652 3444444333211 0000 00000 0011222 23799999999882 2222222222
Q ss_pred HHhhhhhc--cCCcccCCCcEEEEEecCCC-------------CCCcHHHHhcccccccC-CCCCHHHHHHHHHHHHhh
Q 000823 1058 KNEFMVNW--DGLRTKDTERILVLAATNRP-------------FDLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILAK 1120 (1267)
Q Consensus 1058 l~eLL~~l--dgl~~~~~~~VlVIaTTN~p-------------~~Ld~aLlrRFd~vI~~-~~Pd~eeR~eIL~~ll~k 1120 (1267)
+++-...+ .|+...-+.++.||||+|.. -.|++.+++|||.++.+ +.|+.+.-..|.++++..
T Consensus 581 MEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~ 659 (915)
T PTZ00111 581 MEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKD 659 (915)
T ss_pred HhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHh
Confidence 22111111 13333345789999999984 25779999999877554 788888777877777643
No 224
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.72 E-value=2.8e-08 Score=118.98 Aligned_cols=161 Identities=27% Similarity=0.367 Sum_probs=109.8
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeecccc-
Q 000823 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 1006 (1267)
Q Consensus 931 ~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL- 1006 (1267)
..+|++|+|-.....++.+.+.. ..+....|||.|.+||||..+|++|-+.. +.|||.++|+.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR------------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh------------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 46899999998888877777652 12334689999999999999999998776 799999999754
Q ss_pred ----chhccCcc----HHHHH----HHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCC
Q 000823 1007 ----TSKWFGEG----EKYVK----AVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTE 1074 (1267)
Q Consensus 1007 ----~s~~~Ge~----e~~v~----~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~ 1074 (1267)
-+..+|.- .++.+ .+|+.|.. +-||+|||..| +...+..+-+++++-...--|.....+.
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem-----pl~LQaKLLRVLQEkei~rvG~t~~~~v 380 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM-----PLPLQAKLLRVLQEKEIERVGGTKPIPV 380 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC-----CHHHHHHHHHHHhhceEEecCCCCceee
Confidence 22333332 22222 36666655 79999999987 3344455556666543333333333457
Q ss_pred cEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH
Q 000823 1075 RILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK 1112 (1267)
Q Consensus 1075 ~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~eeR~e 1112 (1267)
.|.||||||+. ..+-+.|--|+ .++.+..|...+|.+
T Consensus 381 DVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~e 424 (560)
T COG3829 381 DVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKE 424 (560)
T ss_pred EEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcc
Confidence 89999999974 23334444477 677888888777754
No 225
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.70 E-value=1e-07 Score=112.95 Aligned_cols=161 Identities=21% Similarity=0.305 Sum_probs=105.3
Q ss_pred CCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeecccc
Q 000823 930 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1006 (1267)
Q Consensus 930 ~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL 1006 (1267)
....+.+|+|......++.+.|.. .. +....|||.|.+||||..+|++|-+.. +.||+.++|+.+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~-------VA-----~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAl 285 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEV-------VA-----KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAAL 285 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHH-------Hh-----cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeecccc
Confidence 356778999999988888887763 11 223579999999999999999998877 789999999755
Q ss_pred -----chhccCc----cHHHHH---HHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCC
Q 000823 1007 -----TSKWFGE----GEKYVK---AVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTE 1074 (1267)
Q Consensus 1007 -----~s~~~Ge----~e~~v~---~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~ 1074 (1267)
-+..+|. ..+++. .-|+.|.. +.||+|||..| +...+..+-+++++--.+--|....-..
T Consensus 286 PesLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGel-----PL~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 286 PESLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGEL-----PLALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred chHHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccC-----CHHHHHHHHHHHhhcceeecCCCceeEE
Confidence 2233333 222222 24565555 79999999877 3334444555555432222233223356
Q ss_pred cEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHH
Q 000823 1075 RILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRA 1111 (1267)
Q Consensus 1075 ~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~eeR~ 1111 (1267)
.|-|||+||+- ..+-..+.-|+ .++.+.+|...+|.
T Consensus 358 DVRiIAATNRDL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~ 400 (550)
T COG3604 358 DVRVIAATNRDLEEMVRDGEFRADLYYRL-SVFPLELPPLRERP 400 (550)
T ss_pred EEEEEeccchhHHHHHHcCcchhhhhhcc-cccccCCCCcccCC
Confidence 78999999972 22223333355 46666778777764
No 226
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=5.4e-08 Score=109.64 Aligned_cols=200 Identities=21% Similarity=0.264 Sum_probs=145.0
Q ss_pred ccCCccccccccccccccchhHHHHHHHHHhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeE
Q 000823 417 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKL 496 (1267)
Q Consensus 417 i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~L 496 (1267)
++|+.+.+=-||+-=| .-+-|+-|++-|.+-|+-.++ +-..+|-+-++=|||.|||| ..++.|.||||+++-++.
T Consensus 131 ~LPa~eF~glWEsLiy--ds~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPG--TGKTSLCKaLaQkLSIR~ 205 (423)
T KOG0744|consen 131 YLPAAEFDGLWESLIY--DSNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPG--TGKTSLCKALAQKLSIRT 205 (423)
T ss_pred eccchhhhhhHHHHhh--cccHHHHHHHHHHHHHHHHhc-CCCCceeeeeeEEEEeCCCC--CChhHHHHHHHHhheeee
Confidence 4566666666887433 357788888888888877665 45578999999999999999 799999999999987771
Q ss_pred EEEeccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 000823 497 LIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTS 576 (1267)
Q Consensus 497 L~~D~~~~~~~~~~~e~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 576 (1267)
.+=|.
T Consensus 206 -----~~~y~---------------------------------------------------------------------- 210 (423)
T KOG0744|consen 206 -----NDRYY---------------------------------------------------------------------- 210 (423)
T ss_pred -----cCccc----------------------------------------------------------------------
Confidence 01010
Q ss_pred cccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceecccCCCCCCCCCCCCCCCCcccc
Q 000823 577 AGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFF 656 (1267)
Q Consensus 577 ~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgv~Fd~~~~~~~~l~~~c~~~~~ff 656 (1267)
+| . ..|.|. |.
T Consensus 211 ----------~~-----------------------------~---liEins-------------------------hs-- 221 (423)
T KOG0744|consen 211 ----------KG-----------------------------Q---LIEINS-------------------------HS-- 221 (423)
T ss_pred ----------cc-----------------------------e---EEEEeh-------------------------hH--
Confidence 00 0 123333 21
Q ss_pred cccccccccCCCcchhHHHHHHHHHHHHhhhccCCCe--EEEEcchhhhhc------------CCcchhhHHHHHHhcCC
Q 000823 657 CNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPF--ILFMKDAEKSIA------------GNSDSYSTFKSRLEKLP 722 (1267)
Q Consensus 657 ~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~--ILfi~di~~~l~------------g~~~~~~~lk~~L~~l~ 722 (1267)
.+|||-+| .-.++..+|+-+.++.+.... .|.|||+|.+-. ...+..|.+...|+++.
T Consensus 222 ------LFSKWFsE--SgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK 293 (423)
T KOG0744|consen 222 ------LFSKWFSE--SGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK 293 (423)
T ss_pred ------HHHHHHhh--hhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc
Confidence 34788887 677888888888777665444 357999998653 45667788888887774
Q ss_pred --CcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcCCCeEEEcCCCHH
Q 000823 723 --DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDE 800 (1267)
Q Consensus 723 --g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE 800 (1267)
.||+|++.-|..++ +|.|+-.|-+.+++|+.|..+
T Consensus 294 ~~~NvliL~TSNl~~s-------------------------------------------iD~AfVDRADi~~yVG~Pt~~ 330 (423)
T KOG0744|consen 294 RYPNVLILATSNLTDS-------------------------------------------IDVAFVDRADIVFYVGPPTAE 330 (423)
T ss_pred cCCCEEEEeccchHHH-------------------------------------------HHHHhhhHhhheeecCCccHH
Confidence 69999999998874 334444457789999999999
Q ss_pred HHHHHHHHhhhhhhhh
Q 000823 801 ALLASWKHQLDRDSET 816 (1267)
Q Consensus 801 ~Rl~IwK~qLe~~~e~ 816 (1267)
++++|+|.-+++++..
T Consensus 331 ai~~IlkscieEL~~~ 346 (423)
T KOG0744|consen 331 AIYEILKSCIEELISS 346 (423)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999887776554
No 227
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.70 E-value=9.9e-08 Score=110.99 Aligned_cols=158 Identities=20% Similarity=0.211 Sum_probs=93.7
Q ss_pred chhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccch--
Q 000823 934 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-- 1008 (1267)
Q Consensus 934 ~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s-- 1008 (1267)
+++++|.....+.+.+.+... . +....|||+|++||||+++|++|-... +.+|+.++|..+..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-------a-----~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-------A-----PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-------h-----CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 456788877777777776531 1 122479999999999999999997665 57999999987632
Q ss_pred ---hccCccHHH-------HHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEE
Q 000823 1009 ---KWFGEGEKY-------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 1078 (1267)
Q Consensus 1009 ---~~~Ge~e~~-------v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlV 1078 (1267)
.++|..... ....|..| ..+.|||||||.|- ...+..+.++++.-...-.+.......++.|
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~-----~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~Ri 144 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----MLVQEKLLRVIEYGELERVGGSQPLQVNVRL 144 (326)
T ss_pred HHHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCC-----HHHHHHHHHHHhcCcEEeCCCCceeeccEEE
Confidence 222321110 01123333 34799999999882 1122222222211100000111111246788
Q ss_pred EEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH
Q 000823 1079 LAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK 1112 (1267)
Q Consensus 1079 IaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~eeR~e 1112 (1267)
|+||+.. ..+.+.+..|| ..+.+.+|...+|.+
T Consensus 145 I~~s~~~l~~l~~~g~f~~dL~~~l-~~~~i~lPpLReR~e 184 (326)
T PRK11608 145 VCATNADLPAMVAEGKFRADLLDRL-AFDVVQLPPLRERQS 184 (326)
T ss_pred EEeCchhHHHHHHcCCchHHHHHhc-CCCEEECCChhhhhh
Confidence 8888763 45677888888 345666777766643
No 228
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.66 E-value=1.1e-07 Score=117.45 Aligned_cols=161 Identities=21% Similarity=0.318 Sum_probs=99.4
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccch
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1008 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s 1008 (1267)
.++++++|.....+.+.+.+.... .....|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA------------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 578899999888888887775311 123579999999999999999999876 67999999987632
Q ss_pred h-----ccCccHHHH-------HHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCc-------
Q 000823 1009 K-----WFGEGEKYV-------KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR------- 1069 (1267)
Q Consensus 1009 ~-----~~Ge~e~~v-------~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~------- 1069 (1267)
. .+|...+.. ...|+.+ ..++||||||+.|- .. +...|+..++...
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~-----~~-------~Q~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS-----PA-------FQAKLLRVLQEGEFERVGGN 325 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC-----HH-------HHHHHHHHHhcCcEEECCCC
Confidence 2 122211100 0112222 34799999999882 12 2222332222111
Q ss_pred ccCCCcEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHH----HHHHHHHHhh
Q 000823 1070 TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNR----AKILQVILAK 1120 (1267)
Q Consensus 1070 ~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~eeR----~eIL~~ll~k 1120 (1267)
.....++.+|++|+.. ..+.+.|..|+ ..+.+.+|...+| ..+++.++.+
T Consensus 326 ~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl-~~~~i~lPpLreR~eDi~~L~~~~l~~ 386 (534)
T TIGR01817 326 RTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRI-NVVPIFLPPLRERREDIPLLAEAFLEK 386 (534)
T ss_pred ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHh-cCCeeeCCCcccccccHHHHHHHHHHH
Confidence 1112357888888763 35667777788 3455556655444 4555666543
No 229
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.64 E-value=1.9e-07 Score=115.04 Aligned_cols=201 Identities=21% Similarity=0.303 Sum_probs=114.4
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccc
Q 000823 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1007 (1267)
Q Consensus 931 ~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~ 1007 (1267)
..+|++++|.....+.+.+.+.. +.. ....|||+|++||||+++|+++-... +.+|+.++|+.+-
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~-------~A~-----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARK-------LAM-----LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHH-------HhC-----CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 45788999988877777666542 111 12469999999999999999986655 5799999998763
Q ss_pred hh-----ccCccHH-------HHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCC--cccCC
Q 000823 1008 SK-----WFGEGEK-------YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL--RTKDT 1073 (1267)
Q Consensus 1008 s~-----~~Ge~e~-------~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl--~~~~~ 1073 (1267)
.. .+|...+ ....+|+.|. .+.||||||+.|- ...+..+.++++.- .+... .....
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~-----~~~Q~~Ll~~l~~~--~~~~~g~~~~~~ 337 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMS-----PRMQAKLLRFLNDG--TFRRVGEDHEVH 337 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCC-----HHHHHHHHHHHhcC--CcccCCCCccee
Confidence 21 2232110 0112455443 3799999999882 22222222222210 01111 00112
Q ss_pred CcEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHh----hCCCC-CcccHHHHHHHcC
Q 000823 1074 ERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILA----KEDLS-PDVDFDAIANMTD 1137 (1267)
Q Consensus 1074 ~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~eeR~e----IL~~ll~----k~~l~-~dvdl~~LA~~Te 1137 (1267)
.++.||++|+.. ..+.+.+..|+ ..+.+.+|...+|.+ +++.++. +.+.. ..+..+.+..+..
T Consensus 338 ~~vRiI~st~~~l~~l~~~g~f~~dL~~rL-~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~ 416 (520)
T PRK10820 338 VDVRVICATQKNLVELVQKGEFREDLYYRL-NVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 416 (520)
T ss_pred eeeEEEEecCCCHHHHHHcCCccHHHHhhc-CeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhc
Confidence 467788888764 34667788888 346777777766652 3334443 23321 2344444444433
Q ss_pred C-C--CHHHHHHHHhhhhhH
Q 000823 1138 G-Y--SGSDLKVIFLSHSLI 1154 (1267)
Q Consensus 1138 G-y--Sg~DL~~Lv~~a~l~ 1154 (1267)
- | .-++|++++..+...
T Consensus 417 y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 417 YGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 1 2 446666666655443
No 230
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.64 E-value=1.3e-07 Score=111.44 Aligned_cols=159 Identities=22% Similarity=0.340 Sum_probs=98.1
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH----hCCceEEeeccccc
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE----AGANFINISMSSIT 1007 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~e----lg~~fi~I~~seL~ 1007 (1267)
..+.+++|.....+++.+.+.. +. .-..+|||+|++||||+.+|++|... .+.|||.++|+.+.
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~-------~a-----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA-------YA-----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh-------hC-----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 4567888888777777777653 11 11257999999999999999998643 37899999998763
Q ss_pred hh-----ccCccHHH-------HHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCc
Q 000823 1008 SK-----WFGEGEKY-------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER 1075 (1267)
Q Consensus 1008 s~-----~~Ge~e~~-------v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~ 1075 (1267)
.. .+|..++. -..+|+.|.. ++||+|||..| ....+..+-++++.-...--|........
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~L-----P~~~Q~kLl~~le~g~~~rvG~~~~~~~d 214 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRL-----PPEGQEKLLRVLEEGEYRRVGGSQPRPVD 214 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhC-----CHhHHHHHHHHHHcCceEecCCCCCcCCC
Confidence 32 23322221 1235665555 89999999988 44444544455444322211222234568
Q ss_pred EEEEEecCCC--CCCcH--HHHhcccccccCCCCCHHHHH
Q 000823 1076 ILVLAATNRP--FDLDE--AVIRRLPRRLMVNLPDAPNRA 1111 (1267)
Q Consensus 1076 VlVIaTTN~p--~~Ld~--aLlrRFd~vI~~~~Pd~eeR~ 1111 (1267)
|.+|++|+.. +.+-. .+.+|. ..+.+.+|...+|.
T Consensus 215 VRli~AT~~~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~ 253 (403)
T COG1221 215 VRLICATTEDLEEAVLAGADLTRRL-NILTITLPPLRERK 253 (403)
T ss_pred ceeeeccccCHHHHHHhhcchhhhh-cCceecCCChhhch
Confidence 8999998752 23333 444433 33555666666553
No 231
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.63 E-value=5.1e-07 Score=110.34 Aligned_cols=206 Identities=20% Similarity=0.214 Sum_probs=130.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh----------CCceEEeeccccch----------hccCccHH------HHHHHHH-H
Q 000823 972 GILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSITS----------KWFGEGEK------YVKAVFS-L 1024 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~el----------g~~fi~I~~seL~s----------~~~Ge~e~------~v~~lF~-~ 1024 (1267)
.+.+.|-||||||.+++.+-+.| .+.|+.|++-.+.+ .+.|+.-. .+..-|. .
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 68999999999999999998766 47888898865532 12222211 1122222 1
Q ss_pred HHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHH----Hhccc-cc
Q 000823 1025 ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAV----IRRLP-RR 1099 (1267)
Q Consensus 1025 A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aL----lrRFd-~v 1099 (1267)
.-+..++||+|||+|.|+.+. ..++.-| -..+...+.+++||+..|..+....-+ -+|++ .+
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~---------QdVlYn~----fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS---------QDVLYNI----FDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc---------HHHHHHH----hcCCcCCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 123357899999999998543 2333332 233444578999999999866433333 23553 57
Q ss_pred ccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 000823 1100 LMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDWLLVYLIVLQNLCV 1179 (1267)
Q Consensus 1100 I~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~~i~~~l~~l~~Lc~ 1179 (1267)
|.|.+++.++..+|+...+.........-.+-+|+.....||.--+ -.++|+
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRr----------------------------aldic~ 622 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARR----------------------------ALDICR 622 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHH----------------------------HHHHHH
Confidence 8999999999999999998766333222234444444444443222 117888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCHHHHHHHHHHhcccccc
Q 000823 1180 TAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSS 1237 (1267)
Q Consensus 1180 ~Aa~~aire~l~~~~~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~ 1237 (1267)
.|+..+-.+.. + ........|++-|+.+|++.|..+.-.
T Consensus 623 RA~Eia~~~~~-~------------------~k~~~~q~v~~~~v~~Ai~em~~~~~~ 661 (767)
T KOG1514|consen 623 RAAEIAEERNV-K------------------GKLAVSQLVGILHVMEAINEMLASPYI 661 (767)
T ss_pred HHHHHhhhhcc-c------------------ccccccceeehHHHHHHHHHHhhhhHH
Confidence 88877655422 1 112233569999999999999877544
No 232
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.62 E-value=2.2e-07 Score=114.23 Aligned_cols=159 Identities=18% Similarity=0.284 Sum_probs=97.4
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccch-
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS- 1008 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s- 1008 (1267)
.+.+++|.....+.+.+.+... ......|||+|++||||+++|++|.... +.+|+.++|..+-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV------------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH------------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 3567888888888887777531 1123579999999999999999998875 57999999987632
Q ss_pred ----hccCccHHH----H---HHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEE
Q 000823 1009 ----KWFGEGEKY----V---KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERIL 1077 (1267)
Q Consensus 1009 ----~~~Ge~e~~----v---~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~Vl 1077 (1267)
..+|..... . ...|+.|. .+.|||||||.|- ...+..+.+++++-....-+-......++.
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~-----~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 324 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELP-----LALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCC-----HHHHHHHHHHHhcCCEeeCCCCcceecceE
Confidence 223321110 0 11344433 4799999999882 222222222222110000011111234678
Q ss_pred EEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH
Q 000823 1078 VLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK 1112 (1267)
Q Consensus 1078 VIaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~eeR~e 1112 (1267)
||++|+.. ..+.+.+..|+ ..+.+.+|...+|.+
T Consensus 325 iI~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~e 365 (509)
T PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGD 365 (509)
T ss_pred EEEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchh
Confidence 99999864 35667777788 456677787777753
No 233
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.62 E-value=4.9e-08 Score=103.25 Aligned_cols=118 Identities=22% Similarity=0.384 Sum_probs=67.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchh-----ccCccHH-------HHHHHHHHHHhcCCeEEEE
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEK-------YVKAVFSLASKIAPSVIFV 1035 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~-----~~Ge~e~-------~v~~lF~~A~k~~PsIIfI 1035 (1267)
..|||+|++||||+.+|++|-+.. +.+|+.++|+.+... .+|.... ....+|+.|.. .+|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANG---GTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTT---SEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccc---eEEee
Confidence 579999999999999999998866 579999999876322 3332211 11246666655 89999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhcc
Q 000823 1036 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRL 1096 (1267)
Q Consensus 1036 DEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p-------~~Ld~aLlrRF 1096 (1267)
|||+.|- ...+..+-++++.-....-+.......++.||++|+.. ..+.+.|..|+
T Consensus 100 d~I~~L~-----~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~~g~fr~dLy~rL 162 (168)
T PF00158_consen 100 DEIEDLP-----PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVEQGRFREDLYYRL 162 (168)
T ss_dssp ETGGGS------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHH
T ss_pred cchhhhH-----HHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHHcCCChHHHHHHh
Confidence 9999882 22222222222221111111111123578999999863 34445555454
No 234
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.61 E-value=4.1e-07 Score=115.74 Aligned_cols=160 Identities=21% Similarity=0.323 Sum_probs=97.8
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccch
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1008 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s 1008 (1267)
..|++++|.....+.+.+.+... . .....|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-------a-----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-------A-----QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-------h-----CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 46778999988888887776531 1 122479999999999999999998765 67999999986532
Q ss_pred -----hccCccHH-------HHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcE
Q 000823 1009 -----KWFGEGEK-------YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERI 1076 (1267)
Q Consensus 1009 -----~~~Ge~e~-------~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~V 1076 (1267)
.++|.... .....|+.|. .++||||||+.|- ...+..+.+++++-....-+.......++
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~-----~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMP-----LELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCC-----HHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 22332110 0112344433 4899999999882 22222222222221000011111123567
Q ss_pred EEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH
Q 000823 1077 LVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK 1112 (1267)
Q Consensus 1077 lVIaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~eeR~e 1112 (1267)
.+|++|+.. ..+...+..|+ ..+.+.+|...+|.+
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~ 554 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPE 554 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHh
Confidence 889998764 24555666677 456677888777755
No 235
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.61 E-value=2.2e-07 Score=114.28 Aligned_cols=168 Identities=23% Similarity=0.317 Sum_probs=101.6
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccch
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1008 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s 1008 (1267)
.+|+++.|.....+.+.+.+.. +. .....|||+|++||||+++|++|-+.. +.+|+.++|..+-.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-------~A-----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-------YA-----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------Hh-----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 5688999999888888877752 11 122579999999999999999998765 68999999976532
Q ss_pred -----hccCccHHH--------HHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCc
Q 000823 1009 -----KWFGEGEKY--------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER 1075 (1267)
Q Consensus 1009 -----~~~Ge~e~~--------v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~ 1075 (1267)
..+|..++. -..+|+.|. .+.||||||+.| +...+..+.+++++--...-|.......+
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~d 348 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-----PLPLQTRLLRVLEEREVVRVGGTEPVPVD 348 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-----CHHHHHHHHHHHhcCcEEecCCCceeeec
Confidence 233322111 122455444 379999999988 22223333333322111011111111235
Q ss_pred EEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhh
Q 000823 1076 ILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAK 1120 (1267)
Q Consensus 1076 VlVIaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~eeR~e----IL~~ll~k 1120 (1267)
+.+|++|+.. ..+.+.+..|+ ..+.+.+|...+|.+ +++.++.+
T Consensus 349 vRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 349 VRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred ceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHH
Confidence 6788888764 23444555576 456677777776654 44455443
No 236
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.59 E-value=1.3e-07 Score=116.17 Aligned_cols=167 Identities=21% Similarity=0.346 Sum_probs=102.2
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----------hCCceEE
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----------AGANFIN 1000 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~e-----------lg~~fi~ 1000 (1267)
-+|+++.|.....+.+.+.+.. +. .....|||+|++||||+++|++|-+. .+.+|+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-------~A-----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-------YA-----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------Hh-----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 3578899998888888887752 11 12257999999999999999999877 3679999
Q ss_pred eeccccch-----hccCccHHHH--------HHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccC
Q 000823 1001 ISMSSITS-----KWFGEGEKYV--------KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1067 (1267)
Q Consensus 1001 I~~seL~s-----~~~Ge~e~~v--------~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldg 1067 (1267)
++|+.+-. ..+|..++.. ..+|+.|. .+.||||||+.| +...+..+.+++++--...-|
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----p~~~Q~kLl~~L~e~~~~r~G 355 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM-----PLPLQTRLLRVLEEKEVTRVG 355 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC-----CHHHHHHHHhhhhcCeEEecC
Confidence 99987532 2333222111 12455554 379999999988 222222222322221100111
Q ss_pred CcccCCCcEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHh
Q 000823 1068 LRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILA 1119 (1267)
Q Consensus 1068 l~~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~eeR~e----IL~~ll~ 1119 (1267)
....-..++.||++||.. ..+.+.+..|+ ..+.+.+|...+|.+ +++.++.
T Consensus 356 ~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~ 417 (538)
T PRK15424 356 GHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLK 417 (538)
T ss_pred CCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHH
Confidence 111123467889988764 23445566677 467778888777753 4444444
No 237
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=1.1e-06 Score=102.16 Aligned_cols=167 Identities=11% Similarity=0.125 Sum_probs=108.0
Q ss_pred cHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEE----------------eec
Q 000823 940 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN----------------ISM 1003 (1267)
Q Consensus 940 le~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~----------------I~~ 1003 (1267)
+....+.|...+.. .+-+..+||+||.|+||+++|+++|+.+-+.--. -+.
T Consensus 7 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~H 73 (325)
T PRK06871 7 LQPTYQQITQAFQQ-------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNH 73 (325)
T ss_pred hHHHHHHHHHHHHc-------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 45556666666542 2334689999999999999999999988431100 001
Q ss_pred cccc--hhccC--ccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCc
Q 000823 1004 SSIT--SKWFG--EGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER 1075 (1267)
Q Consensus 1004 seL~--s~~~G--e~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~ 1075 (1267)
+++. ....| -.-..++.+-+.+... ...|++||++|.|- ....|.|+..++. ++.+
T Consensus 74 PD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEE----Pp~~ 137 (325)
T PRK06871 74 PDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEE----PRPN 137 (325)
T ss_pred CCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhC------------HHHHHHHHHHhcC----CCCC
Confidence 1111 00001 1234556655554433 34699999999883 3344556655555 3567
Q ss_pred EEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCC
Q 000823 1076 ILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYS 1140 (1267)
Q Consensus 1076 VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGyS 1140 (1267)
+++|.+|+.++.|.|.+++|+ ..+.|..|+.++..+.|..... ........++..+.|--
T Consensus 138 ~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p 197 (325)
T PRK06871 138 TYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRP 197 (325)
T ss_pred eEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCH
Confidence 899999999999999999999 7899999999998888876532 12223445566666633
No 238
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=3.8e-06 Score=99.15 Aligned_cols=186 Identities=23% Similarity=0.285 Sum_probs=123.3
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceEEeeccccch--
Q 000823 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS-- 1008 (1267)
Q Consensus 936 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el-----g~~fi~I~~seL~s-- 1008 (1267)
.+.|-+.-+..+++++..++.. +..+++.+.|-||||||.+...+...+ ....++++|.++..
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~----------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLEL----------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhc----------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 5677888888888888865542 234789999999999999998777655 33558888875411
Q ss_pred ----h----c----cCcc-HHHHHHHHHHH-Hhc-CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCC
Q 000823 1009 ----K----W----FGEG-EKYVKAVFSLA-SKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT 1073 (1267)
Q Consensus 1009 ----~----~----~Ge~-e~~v~~lF~~A-~k~-~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~ 1073 (1267)
+ + .+.. +......|+.- ... .+-||++||+|.|+.+. +.++.++ .+|..+ .+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~---------~~vLy~l-Fewp~l---p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS---------QTVLYTL-FEWPKL---PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc---------cceeeee-hhcccC---Cc
Confidence 1 1 1111 11122233222 222 36799999999997332 2233222 234444 46
Q ss_pred CcEEEEEecCCCCCCcHHHHh---c---ccccccCCCCCHHHHHHHHHHHHhhCCCCCcc--cHHHHHHHcCCCCHHHHH
Q 000823 1074 ERILVLAATNRPFDLDEAVIR---R---LPRRLMVNLPDAPNRAKILQVILAKEDLSPDV--DFDAIANMTDGYSGSDLK 1145 (1267)
Q Consensus 1074 ~~VlVIaTTN~p~~Ld~aLlr---R---Fd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dv--dl~~LA~~TeGySg~DL~ 1145 (1267)
.++++|+.+|..+.-|..|-+ | -+..+.|++++.++..+||+..+......... -++-+|+...|-| +|++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~S-GDlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPS-GDLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCc-hhHH
Confidence 789999999988766554433 2 25678999999999999999999887654333 3667788888755 5777
No 239
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.56 E-value=3.2e-07 Score=96.43 Aligned_cols=133 Identities=22% Similarity=0.302 Sum_probs=85.8
Q ss_pred ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------------
Q 000823 939 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------------------- 997 (1267)
Q Consensus 939 Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~--------------------- 997 (1267)
|++++.+.|...+.. .+-+..+||+||+|+||+++|.++|+.+-..
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 677888888887763 2334679999999999999999999988221
Q ss_pred --eEEeeccccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc
Q 000823 998 --FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1071 (1267)
Q Consensus 998 --fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~ 1071 (1267)
++.+....... .-.-..++.+...+... ...|++|||+|.|- ....|.|+..|+.-
T Consensus 68 ~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~------------~~a~NaLLK~LEep--- 129 (162)
T PF13177_consen 68 PDFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT------------EEAQNALLKTLEEP--- 129 (162)
T ss_dssp TTEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHST---
T ss_pred cceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh------------HHHHHHHHHHhcCC---
Confidence 22222211100 01234566666555433 35699999999883 33445555555543
Q ss_pred CCCcEEEEEecCCCCCCcHHHHhcccccccCCC
Q 000823 1072 DTERILVLAATNRPFDLDEAVIRRLPRRLMVNL 1104 (1267)
Q Consensus 1072 ~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~ 1104 (1267)
+.++.+|.+|+.++.|-+.+++|+ ..+.|+.
T Consensus 130 -p~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 130 -PENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp -TTTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred -CCCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 568999999999999999999999 5666654
No 240
>PRK12377 putative replication protein; Provisional
Probab=98.56 E-value=4.1e-07 Score=101.95 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=66.1
Q ss_pred HhcCcCCCCCCCccchhcc----ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-
Q 000823 920 LLADVIPPSDIGVTFDDIG----ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA- 994 (1267)
Q Consensus 920 li~~ii~~~~~~vt~~DI~----Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el- 994 (1267)
+....+++.....+|++.. +...+....+.++.. |.. ...+++|+||||||||+||.|||+++
T Consensus 59 ~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~~-----~~~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 59 LNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LMT-----GCTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred HHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HHh-----cCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444455555566787764 333344444444332 111 12589999999999999999999988
Q ss_pred --CCceEEeeccccchhccCcc--HHHHHHHHHHHHhcCCeEEEEccchhh
Q 000823 995 --GANFINISMSSITSKWFGEG--EKYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1267)
Q Consensus 995 --g~~fi~I~~seL~s~~~Ge~--e~~v~~lF~~A~k~~PsIIfIDEID~L 1041 (1267)
+..++.++..+++...-... ......++... ....+|+||||...
T Consensus 127 ~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 127 AKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred HcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 77888888887765432110 00111233322 24579999999754
No 241
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1.2e-06 Score=102.27 Aligned_cols=156 Identities=15% Similarity=0.137 Sum_probs=101.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------eEEeeccccchhc-cC----ccHHHHHHHHHHHH
Q 000823 968 KPCKGILLFGPPGTGKTMLAKAVATEAGAN----------------FINISMSSITSKW-FG----EGEKYVKAVFSLAS 1026 (1267)
Q Consensus 968 kP~~gVLL~GPpGTGKT~LAkALA~elg~~----------------fi~I~~seL~s~~-~G----e~e~~v~~lF~~A~ 1026 (1267)
+-+..+||+||+|+||+++|.++|+.+-+. +..-+.+++.--. .+ -.-..++.+-+.+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 345789999999999999999999988331 0001112221000 00 12334555555444
Q ss_pred h----cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccC
Q 000823 1027 K----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMV 1102 (1267)
Q Consensus 1027 k----~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~ 1102 (1267)
. ....|++||++|.|- ...-|.|+..++. ++.++++|.+|+.++.|-|.+++|+ ..+.|
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRC-q~~~~ 164 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT------------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRSRC-RLHYL 164 (334)
T ss_pred hccccCCceEEEEcchHhhC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhcc-ccccC
Confidence 3 335699999999883 3344556665555 3568899999999999999999999 57899
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHH
Q 000823 1103 NLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDL 1144 (1267)
Q Consensus 1103 ~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL 1144 (1267)
+.|+.++..+.|... .+++ ......++..+.|--+..+
T Consensus 165 ~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 165 APPPEQYALTWLSRE---VTMS-QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred CCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCCCHHHHH
Confidence 999998887777532 2322 2235566777777444333
No 242
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.56 E-value=2.2e-07 Score=117.13 Aligned_cols=159 Identities=19% Similarity=0.269 Sum_probs=95.8
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccc-
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT- 1007 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~- 1007 (1267)
.+|++++|.....+.+.+.+.... +....|||+|++||||+++|++|.+.. +.+|+.++|..+-
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA------------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 467888888877777766665211 122469999999999999999998876 5799999997652
Q ss_pred ----hhccCccHH----HHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEE
Q 000823 1008 ----SKWFGEGEK----YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1079 (1267)
Q Consensus 1008 ----s~~~Ge~e~----~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVI 1079 (1267)
+.++|.... .....|+.| ..++||||||+.|- ...+..+.+++++-...--+.......++.||
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~-----~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 461 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS-----PELQSALLQVLKTGVITRLDSRRLIPVDVRVI 461 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC-----HHHHHHHHHHHhcCcEEeCCCCceEEeeEEEE
Confidence 233442200 000123333 34899999999882 22222222222211100001101112367889
Q ss_pred EecCCC-------CCCcHHHHhcccccccCCCCCHHHHH
Q 000823 1080 AATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRA 1111 (1267)
Q Consensus 1080 aTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~eeR~ 1111 (1267)
+||+.. ..+.+.+..|+ ..+.+.+|...+|.
T Consensus 462 ~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~ 499 (638)
T PRK11388 462 ATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRR 499 (638)
T ss_pred EeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhh
Confidence 998863 34556666677 45777788877774
No 243
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.55 E-value=1.2e-06 Score=107.43 Aligned_cols=200 Identities=18% Similarity=0.278 Sum_probs=122.2
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccc----
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT---- 1007 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~---- 1007 (1267)
.+.+|+.-..+..++++.++...+. . ..+.+-+||+||+|||||++++.||+++++.+++...+...
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~------~---~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~ 86 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFS------G---SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESD 86 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhc------c---CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccc
Confidence 4677888887777778777763211 1 22334688999999999999999999999999886432210
Q ss_pred ---hhccCcc---HHHHH--HHH-----HHHHh-----------cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000823 1008 ---SKWFGEG---EKYVK--AVF-----SLASK-----------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1267)
Q Consensus 1008 ---s~~~Ge~---e~~v~--~lF-----~~A~k-----------~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~ 1063 (1267)
..+.+.. ...+. ..| ..++. ..+.||+|+|+-.++.. . ....+.++..++.
T Consensus 87 ~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~----~-~~~f~~~L~~~l~ 161 (519)
T PF03215_consen 87 NQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR----D-TSRFREALRQYLR 161 (519)
T ss_pred cccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch----h-HHHHHHHHHHHHH
Confidence 1111110 10011 112 11111 23679999999866422 1 1333444444432
Q ss_pred hccCCcccCCC-cEEEEEec-------CCC--------CCCcHHHHhcc-cccccCCCCCHHHHHHHHHHHHhhC-----
Q 000823 1064 NWDGLRTKDTE-RILVLAAT-------NRP--------FDLDEAVIRRL-PRRLMVNLPDAPNRAKILQVILAKE----- 1121 (1267)
Q Consensus 1064 ~ldgl~~~~~~-~VlVIaTT-------N~p--------~~Ld~aLlrRF-d~vI~~~~Pd~eeR~eIL~~ll~k~----- 1121 (1267)
. ... ++++|.|- |.. ..+.+.++... -.+|.|.+-...-..+.|+.++..+
T Consensus 162 ~-------~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~ 234 (519)
T PF03215_consen 162 S-------SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSS 234 (519)
T ss_pred c-------CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhc
Confidence 2 122 67777771 111 14667777732 2678899888888888888888766
Q ss_pred C---CCCccc-HHHHHHHcCCCCHHHHHHHHhhhhhHHH
Q 000823 1122 D---LSPDVD-FDAIANMTDGYSGSDLKVIFLSHSLICN 1156 (1267)
Q Consensus 1122 ~---l~~dvd-l~~LA~~TeGySg~DL~~Lv~~a~l~~~ 1156 (1267)
+ ...... ++.|+..+. +||+.+|...++++.
T Consensus 235 ~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 235 GKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred CCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 1 111122 667766655 599999999998887
No 244
>PRK08116 hypothetical protein; Validated
Probab=98.53 E-value=5.6e-07 Score=102.06 Aligned_cols=129 Identities=19% Similarity=0.285 Sum_probs=73.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhccC----ccHHHHHHHHHHHHhcCCeEEEEccchhhhc
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFG----EGEKYVKAVFSLASKIAPSVIFVDEVDSMLG 1043 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~~G----e~e~~v~~lF~~A~k~~PsIIfIDEID~L~~ 1043 (1267)
.+++|+|++|||||+||.+||+++ +.+++.++..+++..+.. ........++.... ...+|+|||+...-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~- 191 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER- 191 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC-
Confidence 579999999999999999999987 788999998887654321 11111122333222 34699999996321
Q ss_pred CCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-CC----CcHHHHhcc---cccccCCCCCHHHHHHHHH
Q 000823 1044 RRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-FD----LDEAVIRRL---PRRLMVNLPDAPNRAKILQ 1115 (1267)
Q Consensus 1044 ~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p-~~----Ld~aLlrRF---d~vI~~~~Pd~eeR~eIL~ 1115 (1267)
.. .... ..|...++.... ....+|.|||.+ .. ++..+.+|+ ...|.+.-++. |.++.+
T Consensus 192 --~t----~~~~---~~l~~iin~r~~---~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~--R~~~~~ 257 (268)
T PRK08116 192 --DT----EWAR---EKVYNIIDSRYR---KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY--RKEIAK 257 (268)
T ss_pred --CC----HHHH---HHHHHHHHHHHH---CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh--hHHHHH
Confidence 11 1111 222222222211 223466777754 33 466777775 23345554543 444444
Q ss_pred H
Q 000823 1116 V 1116 (1267)
Q Consensus 1116 ~ 1116 (1267)
.
T Consensus 258 e 258 (268)
T PRK08116 258 E 258 (268)
T ss_pred H
Confidence 3
No 245
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=3.6e-06 Score=97.60 Aligned_cols=159 Identities=15% Similarity=0.142 Sum_probs=105.1
Q ss_pred cHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 000823 940 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------------------- 997 (1267)
Q Consensus 940 le~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~---------------------- 997 (1267)
+....+.|...+.. .+-+..+||+||.|+||+.+|+++|+.+-+.
T Consensus 8 l~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 8 LVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 45666677666542 2344689999999999999999999988321
Q ss_pred -eEEeeccccchhccCccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccC
Q 000823 998 -FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1072 (1267)
Q Consensus 998 -fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~ 1072 (1267)
|+.+.... .++.+ .-..++.+-+.+... ...|++||++|.|- ...-|.|+..++. +
T Consensus 75 D~~~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----P 135 (319)
T PRK06090 75 DLHVIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEE----P 135 (319)
T ss_pred CEEEEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcC----C
Confidence 22221110 00111 123455555444333 35799999999882 3344556655555 3
Q ss_pred CCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCC
Q 000823 1073 TERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDG 1138 (1267)
Q Consensus 1073 ~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeG 1138 (1267)
+.++++|.+|+.++.|-|.+++|+ ..+.|+.|+.++..+.+... ++. ....+++...|
T Consensus 136 p~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~~----~~~---~~~~~l~l~~G 193 (319)
T PRK06090 136 APNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKGQ----GIT---VPAYALKLNMG 193 (319)
T ss_pred CCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHHc----CCc---hHHHHHHHcCC
Confidence 567899999999999999999999 78999999998888777542 222 23455566666
No 246
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=3.2e-06 Score=98.04 Aligned_cols=170 Identities=19% Similarity=0.213 Sum_probs=108.0
Q ss_pred cHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce-------------EEeecccc
Q 000823 940 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------------INISMSSI 1006 (1267)
Q Consensus 940 le~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~f-------------i~I~~seL 1006 (1267)
+..+.+.|...+.. .+-+..+||+||+|+||+++|.++|+.+-+.- ..-+.+++
T Consensus 9 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 9 QQRAYDQTVAALDA-------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 35566666666542 23346799999999999999999998873310 00011121
Q ss_pred ch-----hccC------ccHHHHHHHHHHHHhcC----CeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc
Q 000823 1007 TS-----KWFG------EGEKYVKAVFSLASKIA----PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1071 (1267)
Q Consensus 1007 ~s-----~~~G------e~e~~v~~lF~~A~k~~----PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~ 1071 (1267)
.- ...| -.-..|+.+.+.+...+ ..|++||++|.|- ....|.|+..++.
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE---- 139 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLEE---- 139 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhhC----
Confidence 10 0001 11334566655554433 3699999999882 2334555555544
Q ss_pred CCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHH
Q 000823 1072 DTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDL 1144 (1267)
Q Consensus 1072 ~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL 1144 (1267)
++.++++|.+|+.++.|-|.+++|+ ..+.|..|+.++..+.|.. .++. ..+...++..+.|--+..+
T Consensus 140 Pp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~----~~~~-~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 140 PSPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLA----QGVS-ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred CCCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHH----cCCC-hHHHHHHHHHcCCCHHHHH
Confidence 3457788888999999999999999 7889999999887777753 2332 2234567777777444443
No 247
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.49 E-value=4.3e-06 Score=95.37 Aligned_cols=177 Identities=18% Similarity=0.239 Sum_probs=107.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCceEEeecccc------chh---ccCc-------cHHHHHHHHHHH
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSI------TSK---WFGE-------GEKYVKAVFSLA 1025 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---------g~~fi~I~~seL------~s~---~~Ge-------~e~~v~~lF~~A 1025 (1267)
.++||+|++|+|||++++.++... .+|++.+.++.- ... .+|. ....-.++....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998765 257788776421 100 0111 122334455667
Q ss_pred HhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC--CCCcHHHHhcccccccCC
Q 000823 1026 SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP--FDLDEAVIRRLPRRLMVN 1103 (1267)
Q Consensus 1026 ~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p--~~Ld~aLlrRFd~vI~~~ 1103 (1267)
+...+.+|+||||+.++.... ...+.+++.+-.+-..+ .-.++.++|-... -.-|+.+.+|| ..+.++
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~-----~~qr~~Ln~LK~L~NeL----~ipiV~vGt~~A~~al~~D~QLa~RF-~~~~Lp 211 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSY-----RKQREFLNALKFLGNEL----QIPIVGVGTREAYRALRTDPQLASRF-EPFELP 211 (302)
T ss_pred HHcCCcEEEeechHHHhcccH-----HHHHHHHHHHHHHhhcc----CCCeEEeccHHHHHHhccCHHHHhcc-CCccCC
Confidence 788889999999999864321 22244444443332222 3456666654432 34578999999 456665
Q ss_pred CCC-HHHHHHHHHHHHhhCCCC--Cccc----HHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhhHHHHHHHHHHH
Q 000823 1104 LPD-APNRAKILQVILAKEDLS--PDVD----FDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDWLLVYLIVLQN 1176 (1267)
Q Consensus 1104 ~Pd-~eeR~eIL~~ll~k~~l~--~dvd----l~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~~i~~~l~~l~~ 1176 (1267)
.-. .++-..++..+-....+. +.+. ...|-.+++|..| +|. .
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~------------------------------~ 260 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELS------------------------------R 260 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHH------------------------------H
Confidence 532 334455565555544433 2222 3456677888554 455 6
Q ss_pred HHHHHHHHHHHH
Q 000823 1177 LCVTAAHRPIKE 1188 (1267)
Q Consensus 1177 Lc~~Aa~~aire 1188 (1267)
+...||..+++.
T Consensus 261 ll~~aA~~AI~s 272 (302)
T PF05621_consen 261 LLNAAAIAAIRS 272 (302)
T ss_pred HHHHHHHHHHhc
Confidence 778888888774
No 248
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=98.47 E-value=2e-07 Score=78.78 Aligned_cols=50 Identities=28% Similarity=0.419 Sum_probs=44.3
Q ss_pred eEEcCCC-CcceeecCCCCccceEEEEEEecCCceEEEEEEec-CCceEEcCeee
Q 000823 147 FTVGSSR-QCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIG-SKGLQVNGKNL 199 (1267)
Q Consensus 147 ~tvGr~~-~Cd~~l~~~~~s~~~c~i~~~~~~~~~~~~Led~s-~nGt~VNg~~~ 199 (1267)
++|||.. .||+.|.++.+|..||+|.....+ .++|+|++ +|||||||+.|
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~~---~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGGG---RFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECCCC---eEEEEECCCCCCeeECCEEC
Confidence 5899999 999999999999999999875332 57999999 89999999875
No 249
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.46 E-value=1.3e-06 Score=97.74 Aligned_cols=107 Identities=22% Similarity=0.307 Sum_probs=66.8
Q ss_pred hcCcCCCCCCCccchhcccc----HHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh--
Q 000823 921 LADVIPPSDIGVTFDDIGAL----ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-- 994 (1267)
Q Consensus 921 i~~ii~~~~~~vt~~DI~Gl----e~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el-- 994 (1267)
....+++.....+|++.... ..+...+.+++.. +. ....+++|+|++|||||+|+.+||+++
T Consensus 58 ~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~-----~~~~~~~l~G~~GtGKThLa~aia~~l~~ 125 (244)
T PRK07952 58 NRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD-----GNIASFIFSGKPGTGKNHLAAAICNELLL 125 (244)
T ss_pred HHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc-----cCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34445555556788876532 2233344443321 11 112489999999999999999999998
Q ss_pred -CCceEEeeccccchhccCc---cHHHHHHHHHHHHhcCCeEEEEccchhh
Q 000823 995 -GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1267)
Q Consensus 995 -g~~fi~I~~seL~s~~~Ge---~e~~v~~lF~~A~k~~PsIIfIDEID~L 1041 (1267)
+..++.++.+++....... .......++.... ...+|+|||++..
T Consensus 126 ~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 126 RGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred cCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 7888889888876543221 1111223444333 4679999999865
No 250
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=9.4e-07 Score=103.27 Aligned_cols=152 Identities=16% Similarity=0.168 Sum_probs=99.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCceE---Eeec--------------cccc--h-hc-----------------
Q 000823 968 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI---NISM--------------SSIT--S-KW----------------- 1010 (1267)
Q Consensus 968 kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi---~I~~--------------seL~--s-~~----------------- 1010 (1267)
+-+..+||+||+|+||+++|+++|+.+.+.-- .-.| +++. . ..
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 34578999999999999999999998854220 0001 1110 0 00
Q ss_pred --cC---------ccHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCc
Q 000823 1011 --FG---------EGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER 1075 (1267)
Q Consensus 1011 --~G---------e~e~~v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~ 1075 (1267)
.| -.-..++.+...+... ...|++||++|.|- ...-|.|+..++. ++.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCcC
Confidence 00 1123455555544322 34699999999883 3344566666664 3578
Q ss_pred EEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHH
Q 000823 1076 ILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSD 1143 (1267)
Q Consensus 1076 VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~D 1143 (1267)
+++|.+|++++.|.|.+++|+ ..+.|+.|+.++..+.|... ++.. ...++..+.|--+..
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~----~~~~---~~~~l~~~~Gsp~~A 222 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ----GVAD---ADALLAEAGGAPLAA 222 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc----CCCh---HHHHHHHcCCCHHHH
Confidence 899999999999999999999 78999999999988888653 2221 234566666633333
No 251
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.44 E-value=7.4e-07 Score=100.94 Aligned_cols=182 Identities=19% Similarity=0.246 Sum_probs=120.4
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------eEEeecc
Q 000823 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMS 1004 (1267)
Q Consensus 931 ~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~------fi~I~~s 1004 (1267)
.-.+.|+++.+++...+.++... . .- .++|+|||||+|||....+.|+.+-.+ +..++++
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~~----------~--~l--Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSGM----------P--GL--PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CchhhhHhcCCchhhHHHHhccC----------C--CC--CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 34677888888888888777431 1 12 399999999999999999999998543 2223332
Q ss_pred ccchhccCccHHHHHHHHHHHHh-------cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEE
Q 000823 1005 SITSKWFGEGEKYVKAVFSLASK-------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERIL 1077 (1267)
Q Consensus 1005 eL~s~~~Ge~e~~v~~lF~~A~k-------~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~Vl 1077 (1267)
+=.+ ++ ....--+.|..++. ..+..|++||.|.+. ...+.++++++..+ ..++.
T Consensus 103 d~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT-----~~AQnALRRviek~-----------t~n~r 163 (360)
T KOG0990|consen 103 DDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT-----RDAQNALRRVIEKY-----------TANTR 163 (360)
T ss_pred CccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHhh-----HHHHHHHHHHHHHh-----------ccceE
Confidence 2111 11 11222335555553 257899999999884 23455666655544 35666
Q ss_pred EEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCC-cccHHHHHHHcCCCCHHHHHHHHhh
Q 000823 1078 VLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMTDGYSGSDLKVIFLS 1150 (1267)
Q Consensus 1078 VIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~-dvdl~~LA~~TeGySg~DL~~Lv~~ 1150 (1267)
++..+|.+..+.+++++|| ..+.|...+..+....+.+++..+.... ..-...+++...| |++..+..
T Consensus 164 F~ii~n~~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~g----Dmr~a~n~ 232 (360)
T KOG0990|consen 164 FATISNPPQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVG----DMRVALNY 232 (360)
T ss_pred EEEeccChhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHH----HHHHHHHH
Confidence 7777999999999999999 6788888888888888888887665442 2223445555444 55544443
No 252
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.44 E-value=2.1e-06 Score=100.33 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=46.9
Q ss_pred ch-hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------ceEEeec
Q 000823 934 FD-DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINISM 1003 (1267)
Q Consensus 934 ~~-DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~-------~fi~I~~ 1003 (1267)
|+ ++.|+++.+.+|.+++.... . +.....+-++|+||||+|||+||++||+.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a-------~-g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA-------Q-GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH-------h-cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 44 89999999999888776422 1 11223356899999999999999999999954 6766655
No 253
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.43 E-value=1.2e-06 Score=108.85 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=89.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CceEEeeccccchhccCcc--HHHHH--------HHHHHHHhcCCeEEEEcc
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEG--EKYVK--------AVFSLASKIAPSVIFVDE 1037 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~elg--~~fi~I~~seL~s~~~Ge~--e~~v~--------~lF~~A~k~~PsIIfIDE 1037 (1267)
.+||||.|++|+||++++++++..+. .+|+.+..+--....+|.. +..+. .++..|. ..||||||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe 101 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAM 101 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecC
Confidence 46899999999999999999999984 5888877654444444442 11111 1222222 37999999
Q ss_pred chhhhcCCCCCchHHHHHHHHHhhhhhc--cCCcccCCCcEEEEEecCCC---CCCcHHHHhcccccccCCCCCHHHH
Q 000823 1038 VDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATNRP---FDLDEAVIRRLPRRLMVNLPDAPNR 1110 (1267)
Q Consensus 1038 ID~L~~~r~~~~~~~~~~~il~eLL~~l--dgl~~~~~~~VlVIaTTN~p---~~Ld~aLlrRFd~vI~~~~Pd~eeR 1110 (1267)
+..+ .......+...+.+-...+ ++.....+.++++|+|-|.. ..|.+.++.||+..+.+..|+..+.
T Consensus 102 ~n~~-----~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~ 174 (584)
T PRK13406 102 AERL-----EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDA 174 (584)
T ss_pred cccC-----CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHh
Confidence 9866 3233334444444333333 55555566889999985432 4588999999999999998876653
No 254
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.39 E-value=2.9e-06 Score=102.71 Aligned_cols=291 Identities=16% Similarity=0.136 Sum_probs=159.3
Q ss_pred HHHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 000823 913 ENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 992 (1267)
Q Consensus 913 ~~e~e~~li~~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~ 992 (1267)
.+.+.+++...+.| .|.|.+.+|.-|.-.+.+-...... .... .+.--+|+|.|.||+||+-+.++.+.
T Consensus 332 ~~nly~~lv~Sl~P---------sIyGhe~VK~GilL~LfGGv~K~a~-eg~~-lRGDinv~iVGDPgt~KSQfLk~v~~ 400 (764)
T KOG0480|consen 332 DENLYKNLVNSLFP---------SIYGHELVKAGILLSLFGGVHKSAG-EGTS-LRGDINVCIVGDPGTGKSQFLKAVCA 400 (764)
T ss_pred CchHHHHHHHhhCc---------cccchHHHHhhHHHHHhCCccccCC-CCcc-ccCCceEEEeCCCCccHHHHHHHHhc
Confidence 34455667776666 6889999998887766654432211 1111 22234699999999999999999988
Q ss_pred HhCCceEEee----ccccchhccCccH--HHH--HHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhh
Q 000823 993 EAGANFINIS----MSSITSKWFGEGE--KYV--KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1064 (1267)
Q Consensus 993 elg~~fi~I~----~seL~s~~~Ge~e--~~v--~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ 1064 (1267)
-+-..++..- .+.|....+...+ .++ ...+-.| ..+|-.|||+|.|- ..++.++-..+++--..
T Consensus 401 fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLA---DnGICCIDEFDKMd-----~~dqvAihEAMEQQtIS 472 (764)
T KOG0480|consen 401 FSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLA---DNGICCIDEFDKMD-----VKDQVAIHEAMEQQTIS 472 (764)
T ss_pred cCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEc---cCceEEechhcccC-----hHhHHHHHHHHHhheeh
Confidence 7643333211 1111100000000 000 0011112 23799999999883 22344443333332222
Q ss_pred c--cCCcccCCCcEEEEEecCCCC-------------CCcHHHHhcccccc-cCCCCCHHHHHHHHHHHHhhCCCCCccc
Q 000823 1065 W--DGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRL-MVNLPDAPNRAKILQVILAKEDLSPDVD 1128 (1267)
Q Consensus 1065 l--dgl~~~~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~vI-~~~~Pd~eeR~eIL~~ll~k~~l~~dvd 1128 (1267)
+ .|+...-+.+.-|||++|+.. .+..++++|||..+ -++.|++..-..|-++++..+..-.+
T Consensus 473 IaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~-- 550 (764)
T KOG0480|consen 473 IAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDD-- 550 (764)
T ss_pred heecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccc--
Confidence 2 233333456778899999742 56789999999764 44889999999999999876432211
Q ss_pred HHHHHHHcCCCCHHHHHHHHhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcC
Q 000823 1129 FDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDWLLVYLIVLQNLCVTAA----HRPIKEILEKEKKERAAAMAEG 1204 (1267)
Q Consensus 1129 l~~LA~~TeGySg~DL~~Lv~~a~l~~~vr~~~~l~~~i~~~l~~l~~Lc~~Aa----~~aire~l~~~~~~~~~a~~e~ 1204 (1267)
-......|+-.++++.+.-|.-...+-...+....+..|....+.-.+... ...+|.+-...+...+.|..+.
T Consensus 551 ---~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~ 627 (764)
T KOG0480|consen 551 ---ATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVEC 627 (764)
T ss_pred ---cccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhh
Confidence 112226789899887766544222222222222222222222212111111 1122222111222333333333
Q ss_pred CCCCCCCCCCCCcccCHHHHHHHHHHhccccccc
Q 000823 1205 KPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1238 (1267)
Q Consensus 1205 ~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~ 1238 (1267)
...+|.+|.++|++.++.|+-+-
T Consensus 628 -----------~devt~~~v~ea~eLlk~Siv~v 650 (764)
T KOG0480|consen 628 -----------RDEVTKEDVEEAVELLKKSIVRV 650 (764)
T ss_pred -----------hhhccHHHHHHHHHHHHhhheee
Confidence 36799999999999999997753
No 255
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.38 E-value=1.9e-06 Score=101.62 Aligned_cols=218 Identities=22% Similarity=0.311 Sum_probs=126.5
Q ss_pred CHHHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 000823 912 TENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 991 (1267)
Q Consensus 912 ~~~e~e~~li~~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA 991 (1267)
.+.++...+...+.| +|.|.+++|+.|.-++.+...+.. ..+...+..-+|+|.|.||+.|+.|.++|.
T Consensus 328 ~~~d~yekLa~SiAP---------EIyGheDVKKaLLLlLVGgvd~~~--~dGMKIRGdINicLmGDPGVAKSQLLkyi~ 396 (721)
T KOG0482|consen 328 AEGDFYEKLAASIAP---------EIYGHEDVKKALLLLLVGGVDKSP--GDGMKIRGDINICLMGDPGVAKSQLLKYIS 396 (721)
T ss_pred hcccHHHHHHHhhch---------hhccchHHHHHHHHHhhCCCCCCC--CCCceeecceeEEecCCCchhHHHHHHHHH
Confidence 344555556666665 789999999998877765332211 112223344579999999999999999998
Q ss_pred HHhCCceEE---------eeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000823 992 TEAGANFIN---------ISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1062 (1267)
Q Consensus 992 ~elg~~fi~---------I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL 1062 (1267)
+..-.-++. +.++-+.....|+.-- -...+-.|. .+|-.|||+|.|.. .+..+...++.+-.
T Consensus 397 rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~L-EGGALVLAD---~GICCIDEfDKM~e-----~DRtAIHEVMEQQT 467 (721)
T KOG0482|consen 397 RLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVL-EGGALVLAD---GGICCIDEFDKMDE-----SDRTAIHEVMEQQT 467 (721)
T ss_pred hcCcccceecCCCCCccccchhhhcCCCCCeeEe-ccceEEEcc---CceEeehhhhhhhh-----hhhHHHHHHHHhhh
Confidence 876333222 1111111111111100 001111222 36899999999942 22334444444332
Q ss_pred hhc--cCCcccCCCcEEEEEecCCC-------------CCCcHHHHhcccccccC-CCCCHHHHHHHHHHHHhhC--CCC
Q 000823 1063 VNW--DGLRTKDTERILVLAATNRP-------------FDLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILAKE--DLS 1124 (1267)
Q Consensus 1063 ~~l--dgl~~~~~~~VlVIaTTN~p-------------~~Ld~aLlrRFd~vI~~-~~Pd~eeR~eIL~~ll~k~--~l~ 1124 (1267)
..+ .|+.+.-+.+.-|+|++|.. -.|+.+|++|||..+-+ +.|+.+.-..+.+++.--+ .-.
T Consensus 468 ISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~q 547 (721)
T KOG0482|consen 468 ISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQ 547 (721)
T ss_pred hhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCC
Confidence 222 45555567888999999973 26789999999976655 7788887777777665321 111
Q ss_pred Cc-----ccHH------HHHHHcCCCCHHHHHHHHh
Q 000823 1125 PD-----VDFD------AIANMTDGYSGSDLKVIFL 1149 (1267)
Q Consensus 1125 ~d-----vdl~------~LA~~TeGySg~DL~~Lv~ 1149 (1267)
+. ++.+ .+|+...-+.+.+|..-+.
T Consensus 548 p~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~ 583 (721)
T KOG0482|consen 548 PPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYIT 583 (721)
T ss_pred CCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 12 3322 3345555666666664433
No 256
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.35 E-value=8.5e-06 Score=102.12 Aligned_cols=49 Identities=31% Similarity=0.493 Sum_probs=41.6
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 000823 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 995 (1267)
Q Consensus 931 ~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg 995 (1267)
...|+++.|++++++.|...+.. . .++||+||||+|||++|+++++.+.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~--------------~--~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQ--------------R--RHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHh--------------C--CeEEEECCCCCcHHHHHHHHHHHcC
Confidence 36889999999999998877652 1 3799999999999999999998774
No 257
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=98.34 E-value=1.1e-06 Score=93.66 Aligned_cols=75 Identities=23% Similarity=0.436 Sum_probs=65.5
Q ss_pred eeeeCCeeEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEecC-CceEEcCeeecCCCeeEccCCCEEEEeec
Q 000823 140 VPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGS-KGLQVNGKNLKKNTSCELRSGDEVVFGSL 218 (1267)
Q Consensus 140 l~i~~~~~tvGr~~~Cd~~l~~~~~s~~~c~i~~~~~~~~~~~~Led~s~-nGt~VNg~~~gk~~~~~L~~gDeI~f~~~ 218 (1267)
..+....+|+||+..+|++|++..+|..||.|++..+. .||+|++| |||||||.++.. .+.|++||.|.|+..
T Consensus 84 ~~~~~~~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~~----~~~~d~~S~nGt~vn~~~v~~--~~~l~~gd~i~i~~~ 157 (191)
T COG1716 84 IVLGEPVTTIGRDPDNDIVLDDDVVSRRHAELRREGNE----VFLEDLGSTNGTYVNGEKVRQ--RVLLQDGDVIRLGGT 157 (191)
T ss_pred cccccceEEeccCCCCCEEcCCCccccceEEEEEeCCc----eEEEECCCCcceEECCeEccC--cEEcCCCCEEEECcc
Confidence 33444689999999999999999999999999987544 58899986 999999999998 899999999999876
Q ss_pred CC
Q 000823 219 GN 220 (1267)
Q Consensus 219 ~~ 220 (1267)
..
T Consensus 158 ~~ 159 (191)
T COG1716 158 LA 159 (191)
T ss_pred ce
Confidence 54
No 258
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.34 E-value=1.4e-05 Score=89.47 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=54.0
Q ss_pred EEEEecCC-------------CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCCHH
Q 000823 1077 LVLAATNR-------------PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1267)
Q Consensus 1077 lVIaTTN~-------------p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~TeGySg~ 1142 (1267)
+||.+||+ |.-+++.++.|+ .+|..-.++.++.++|++...+.+++. .+.-+..|+..-..-+-+
T Consensus 327 ivifAsNrG~~~irGt~d~~sPhGip~dllDRl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLR 405 (456)
T KOG1942|consen 327 IVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLR 405 (456)
T ss_pred eEEEecCCcceeecCCcCCCCCCCCCHHHhhhe-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHH
Confidence 56666765 678889999999 778888889999999999999888776 333355566554443444
Q ss_pred HHHHHHhhhhhHHH
Q 000823 1143 DLKVIFLSHSLICN 1156 (1267)
Q Consensus 1143 DL~~Lv~~a~l~~~ 1156 (1267)
-.-+|+.-+..++.
T Consensus 406 y~vqLl~p~~~~ak 419 (456)
T KOG1942|consen 406 YAVQLLTPASILAK 419 (456)
T ss_pred HHHHhcCHHHHHHH
Confidence 44444444444443
No 259
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.33 E-value=2.7e-06 Score=102.51 Aligned_cols=133 Identities=22% Similarity=0.356 Sum_probs=80.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchh-----ccCccHHH----H---HHHHHHHHhcCCeEEEE
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKY----V---KAVFSLASKIAPSVIFV 1035 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~-----~~Ge~e~~----v---~~lF~~A~k~~PsIIfI 1035 (1267)
..++|+|++||||+++|+++.... +.+|+.++|..+... .+|..... . ...|+. ...++|||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l 239 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFL 239 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEE
Confidence 469999999999999999998776 578999999876322 12211100 0 011222 23579999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHH
Q 000823 1036 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAP 1108 (1267)
Q Consensus 1036 DEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~e 1108 (1267)
|||+.|- ...+..+.+++++-.....+.......++.+|+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 240 ~~i~~l~-----~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr 313 (445)
T TIGR02915 240 DEIGDLP-----LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLR 313 (445)
T ss_pred echhhCC-----HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHh-ccceecCCCch
Confidence 9999882 22222222322221111111111123467888888864 45667777788 56777888888
Q ss_pred HHHH
Q 000823 1109 NRAK 1112 (1267)
Q Consensus 1109 eR~e 1112 (1267)
+|.+
T Consensus 314 ~R~~ 317 (445)
T TIGR02915 314 SRDG 317 (445)
T ss_pred hchh
Confidence 7765
No 260
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.32 E-value=1.2e-06 Score=109.93 Aligned_cols=89 Identities=19% Similarity=0.284 Sum_probs=73.7
Q ss_pred CCcceeeeC---CeeEEcCCCCcce-----eecCCCCccceEEEEEEecCCceEEEEEEecC-CceEEcCee-----ecC
Q 000823 136 QNSNVPICA---SIFTVGSSRQCNF-----PLKDQAISAVLCKIKHVQSEGSAVAMVESIGS-KGLQVNGKN-----LKK 201 (1267)
Q Consensus 136 ~~~~l~i~~---~~~tvGr~~~Cd~-----~l~~~~~s~~~c~i~~~~~~~~~~~~Led~s~-nGt~VNg~~-----~gk 201 (1267)
..+.|.|+. --|+|||..+||+ +|.++.||+.|.+|.... + ..||||+.| |||||||+. +..
T Consensus 545 ~~~~~~l~~~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~~--~--~~~~~Dl~S~nGT~v~~~~~~r~~~~p 620 (668)
T PLN02927 545 VSETLCLTKDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKD--G--AFFLMDLRSEHGTYVTDNEGRRYRATP 620 (668)
T ss_pred ccceeeeecCCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEEC--C--EEEEEECCCCCccEEeCCCCceEecCC
Confidence 345688844 5599999999997 999999999999999762 2 379999998 999999988 556
Q ss_pred CCeeEccCCCEEEEeecCCeEEEEEec
Q 000823 202 NTSCELRSGDEVVFGSLGNHAYIFQQL 228 (1267)
Q Consensus 202 ~~~~~L~~gDeI~f~~~~~~ayiF~~l 228 (1267)
|..+.|++||+|-|+...+-+|--+.+
T Consensus 621 ~~~~~l~~~d~I~~g~~~~~~fr~~~~ 647 (668)
T PLN02927 621 NFPARFRSSDIIEFGSDKKAAFRVKVI 647 (668)
T ss_pred CCceEeCCCCEEEeCCCcceeEEEEee
Confidence 789999999999999877655655544
No 261
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.31 E-value=9.7e-06 Score=90.87 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=34.1
Q ss_pred CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC
Q 000823 1085 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS 1124 (1267)
Q Consensus 1085 p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~ 1124 (1267)
|.-++-.++.|. .+|...+++.++.++||+..+..+.+.
T Consensus 339 phGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEdv~ 377 (454)
T KOG2680|consen 339 PHGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEEDVE 377 (454)
T ss_pred CCCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhccc
Confidence 678888999998 788888899999999999999887665
No 262
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.29 E-value=3.7e-06 Score=105.01 Aligned_cols=188 Identities=26% Similarity=0.327 Sum_probs=111.1
Q ss_pred HHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000823 915 EFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 994 (1267)
Q Consensus 915 e~e~~li~~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el 994 (1267)
++...++..++| .|.|++.+|+.|.-.+....... ...+...+.--+|||.|.||+|||.|.+.+++.+
T Consensus 275 ~i~~~l~~SiaP---------sIyG~e~VKkAilLqLfgGv~k~--~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~a 343 (682)
T COG1241 275 DIYDILIKSIAP---------SIYGHEDVKKAILLQLFGGVKKN--LPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLA 343 (682)
T ss_pred cHHHHHHHHhcc---------cccCcHHHHHHHHHHhcCCCccc--CCCCcccccceeEEEcCCCchhHHHHHHHHHhhC
Confidence 344445555555 67899999998877665533211 1111112223579999999999999999999887
Q ss_pred CCceE-Eeeccc---cchhccCcc---HHHH-HHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhc-
Q 000823 995 GANFI-NISMSS---ITSKWFGEG---EKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW- 1065 (1267)
Q Consensus 995 g~~fi-~I~~se---L~s~~~Ge~---e~~v-~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~l- 1065 (1267)
-..++ .-..++ |..-..... +.++ ...+-.| .++|..|||+|.| +.....++...+.+-...+
T Consensus 344 Pr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlA---D~Gv~cIDEfdKm-----~~~dr~aihEaMEQQtIsIa 415 (682)
T COG1241 344 PRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLA---DGGVCCIDEFDKM-----NEEDRVAIHEAMEQQTISIA 415 (682)
T ss_pred CceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEe---cCCEEEEEeccCC-----ChHHHHHHHHHHHhcEeeec
Confidence 43332 222211 110000000 0000 0011112 3589999999987 2233334444443332222
Q ss_pred -cCCcccCCCcEEEEEecCCCC-------------CCcHHHHhcccccccC-CCCCHHHHHHHHHHHHhhC
Q 000823 1066 -DGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILAKE 1121 (1267)
Q Consensus 1066 -dgl~~~~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~vI~~-~~Pd~eeR~eIL~~ll~k~ 1121 (1267)
.|+...-+.+.-|+|++|... .|++.|++|||.++.+ ..|+.+.-..+.++++...
T Consensus 416 KAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 416 KAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred ccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 233334456778999999853 5778999999987666 6788887788888887665
No 263
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.25 E-value=3.7e-05 Score=94.09 Aligned_cols=191 Identities=19% Similarity=0.216 Sum_probs=106.5
Q ss_pred HHHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 000823 913 ENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 992 (1267)
Q Consensus 913 ~~e~e~~li~~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~ 992 (1267)
..++.+.|...+.| .|.|++++|+-|.-.+..-... .+..++-.+.--+|||+|.||||||.|.+.+++
T Consensus 416 rpdiy~lLa~SiAP---------sIye~edvKkglLLqLfGGt~k--~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~ 484 (804)
T KOG0478|consen 416 RPDIYELLARSIAP---------SIYELEDVKKGLLLQLFGGTRK--EDEKSGRFRGDINILLVGDPGTSKSQLLQYCHR 484 (804)
T ss_pred CccHHHHHHHhhch---------hhhcccchhhhHHHHHhcCCcc--cccccccccccceEEEecCCCcCHHHHHHHHHH
Confidence 34555555555555 6889999999887666553322 122222223335799999999999999999998
Q ss_pred HhCCceEEe-eccccchh--ccCccHHHHHHHHHHH---HhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHh--hhhh
Q 000823 993 EAGANFINI-SMSSITSK--WFGEGEKYVKAVFSLA---SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE--FMVN 1064 (1267)
Q Consensus 993 elg~~fi~I-~~seL~s~--~~Ge~e~~v~~lF~~A---~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~e--LL~~ 1064 (1267)
.+-.-++.- ..+.-++. ++-... .-+++.-+. --...+|-.|||+|.|- ......+..++++ +-..
T Consensus 485 l~pRg~yTSGkGsSavGLTayVtrd~-dtkqlVLesGALVLSD~GiCCIDEFDKM~-----dStrSvLhEvMEQQTvSIA 558 (804)
T KOG0478|consen 485 LLPRGVYTSGKGSSAVGLTAYVTKDP-DTRQLVLESGALVLSDNGICCIDEFDKMS-----DSTRSVLHEVMEQQTLSIA 558 (804)
T ss_pred hCCcceeecCCccchhcceeeEEecC-ccceeeeecCcEEEcCCceEEchhhhhhh-----HHHHHHHHHHHHHhhhhHh
Confidence 873221110 00000000 000000 000000000 01124688999999982 1222223333322 1112
Q ss_pred ccCCcccCCCcEEEEEecCCC-------------CCCcHHHHhccccccc-CCCCCHHHHHHHHHHHHhh
Q 000823 1065 WDGLRTKDTERILVLAATNRP-------------FDLDEAVIRRLPRRLM-VNLPDAPNRAKILQVILAK 1120 (1267)
Q Consensus 1065 ldgl~~~~~~~VlVIaTTN~p-------------~~Ld~aLlrRFd~vI~-~~~Pd~eeR~eIL~~ll~k 1120 (1267)
..|+-..-+.+.-|||++|.. -.|+|.|++|||.++- ++.||...-+.+..++..-
T Consensus 559 KAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsL 628 (804)
T KOG0478|consen 559 KAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVAL 628 (804)
T ss_pred hcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHh
Confidence 234444446788899999952 2678999999987754 4788887666666666543
No 264
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.25 E-value=2.6e-06 Score=92.00 Aligned_cols=165 Identities=18% Similarity=0.284 Sum_probs=87.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC---ceEEeecc-c--------c-------------chhc-------------c
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEAGA---NFINISMS-S--------I-------------TSKW-------------F 1011 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~elg~---~fi~I~~s-e--------L-------------~s~~-------------~ 1011 (1267)
...++|+||.|+|||+|++.+.+.+.- ..+.+... . + .... .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 368999999999999999999998822 22222210 0 0 0000 0
Q ss_pred CccHHHHHHHHHHHHhcC-CeEEEEccchhhh-cCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC---
Q 000823 1012 GEGEKYVKAVFSLASKIA-PSVIFVDEVDSML-GRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF--- 1086 (1267)
Q Consensus 1012 Ge~e~~v~~lF~~A~k~~-PsIIfIDEID~L~-~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~--- 1086 (1267)
......+..++....+.. ..||+|||++.+. ..... ..++..+...++.... ..++.+|.++....
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~-------~~~~~~l~~~~~~~~~--~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEED-------KDFLKSLRSLLDSLLS--QQNVSIVITGSSDSLME 170 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTT-------HHHHHHHHHHHHH------TTEEEEEEESSHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccch-------HHHHHHHHHHHhhccc--cCCceEEEECCchHHHH
Confidence 112344566666665543 4899999999997 22211 2333334444443222 23343333333211
Q ss_pred ---CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhC-CC-CCcccHHHHHHHcCCCCHHHHH
Q 000823 1087 ---DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-DL-SPDVDFDAIANMTDGYSGSDLK 1145 (1267)
Q Consensus 1087 ---~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~k~-~l-~~dvdl~~LA~~TeGySg~DL~ 1145 (1267)
.-...+..|+.. +.++..+.++..++++..+... ++ ..+.+++.+...+.| .++-|.
T Consensus 171 ~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG-~P~~l~ 232 (234)
T PF01637_consen 171 EFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGG-NPRYLQ 232 (234)
T ss_dssp HTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT--HHHHH
T ss_pred HhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCC-CHHHHh
Confidence 112234557755 8999999999999999987665 11 256778889999988 454443
No 265
>PRK08181 transposase; Validated
Probab=98.25 E-value=3e-06 Score=96.14 Aligned_cols=70 Identities=23% Similarity=0.388 Sum_probs=50.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhccCc-cHHHHHHHHHHHHhcCCeEEEEccchhhh
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVIFVDEVDSML 1042 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~~Ge-~e~~v~~lF~~A~k~~PsIIfIDEID~L~ 1042 (1267)
.+++|+||||||||+||.++++++ |..++.+++.+++...... .......++.... .+.+|+|||++.+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~ 180 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVT 180 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEecccccc
Confidence 579999999999999999999866 7888999988876653211 1112223333332 45799999998663
No 266
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.25 E-value=3.6e-06 Score=98.08 Aligned_cols=69 Identities=23% Similarity=0.444 Sum_probs=48.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhccCc---cHHHHHHHHHHHHhcCCeEEEEccchhh
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~~Ge---~e~~v~~lF~~A~k~~PsIIfIDEID~L 1041 (1267)
.+++|+||+|+|||+||.|||+++ |..++.++..+++...... ........+.... ...+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 689999999999999999999988 7889999998876543210 0001111122222 3479999999755
No 267
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.24 E-value=8e-06 Score=92.08 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=59.0
Q ss_pred CCeEEEEcchhhhhcCC-----cchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCC
Q 000823 691 CPFILFMKDAEKSIAGN-----SDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPD 765 (1267)
Q Consensus 691 ~p~ILfi~di~~~l~g~-----~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~ 765 (1267)
.+-||||||+|.+..+. .+..+.|...++..++++++|.+.+..+. ++
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~-~~-------------------------- 157 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEM-DY-------------------------- 157 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchh-HH--------------------------
Confidence 35699999999865422 23445566666777788888877654331 00
Q ss_pred ccccccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhh
Q 000823 766 SFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 812 (1267)
Q Consensus 766 ~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~ 812 (1267)
|. .++.+|..||+..|.++.++.+++.+||+..+..
T Consensus 158 -~~----------~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 158 -FL----------SLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred -HH----------hcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 11 1467888999999999999999999999966543
No 268
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=4.2e-06 Score=96.77 Aligned_cols=135 Identities=13% Similarity=0.153 Sum_probs=92.0
Q ss_pred eecccCCCCCCCCCCC----CCCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc--
Q 000823 632 GVRFDKPIPDGVDLGG----QCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA-- 705 (1267)
Q Consensus 632 gv~Fd~~~~~~~~l~~----~c~~~~~ff~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~-- 705 (1267)
-|.|.+|||||+|+.+ .-| +--|=+=.|.|.-- .|- ..--.|..||.-.+. ...-++|||||.|-+++
T Consensus 386 NilfyGPPGTGKTm~ArelAr~S-GlDYA~mTGGDVAP--lG~-qaVTkiH~lFDWakk--S~rGLllFIDEADAFLceR 459 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHS-GLDYAIMTGGDVAP--LGA-QAVTKIHKLFDWAKK--SRRGLLLFIDEADAFLCER 459 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhc-CCceehhcCCCccc--cch-HHHHHHHHHHHHHhh--cccceEEEehhhHHHHHHh
Confidence 3689999999999542 111 11222222322211 111 133466777777765 36789999999999998
Q ss_pred CCcchhhHHHHHHhcC-------CCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCch
Q 000823 706 GNSDSYSTFKSRLEKL-------PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIP 778 (1267)
Q Consensus 706 g~~~~~~~lk~~L~~l-------~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~ 778 (1267)
....+.....+.|..+ +..|+++=++|++..
T Consensus 460 nktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgd------------------------------------------ 497 (630)
T KOG0742|consen 460 NKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD------------------------------------------ 497 (630)
T ss_pred chhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccc------------------------------------------
Confidence 3334444455555333 457788888898863
Q ss_pred hHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhhhhh
Q 000823 779 KATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSE 815 (1267)
Q Consensus 779 ~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~~~e 815 (1267)
.|.+++.||+..|+|+||.+|+|.++++..+++++.
T Consensus 498 -lDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 498 -LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred -hhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhc
Confidence 588899999999999999999999999998888653
No 269
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=6.6e-06 Score=95.84 Aligned_cols=131 Identities=18% Similarity=0.196 Sum_probs=87.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC-------------------------ceEEeeccccchhccC-----ccHHH
Q 000823 968 KPCKGILLFGPPGTGKTMLAKAVATEAGA-------------------------NFINISMSSITSKWFG-----EGEKY 1017 (1267)
Q Consensus 968 kP~~gVLL~GPpGTGKT~LAkALA~elg~-------------------------~fi~I~~seL~s~~~G-----e~e~~ 1017 (1267)
+-+..+||+||+|+|||++|+++|+.+.+ .|+.+....-. .-.| -.-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 34468999999999999999999998743 13333321100 0001 12345
Q ss_pred HHHHHHHHHhc----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHH
Q 000823 1018 VKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVI 1093 (1267)
Q Consensus 1018 v~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLl 1093 (1267)
|+.+.+.+... ...|++||+++.|- ....+.++..++... ..+.+|.+|+.+..+.+.++
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld------------~~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMN------------LQAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCC------------HHHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHH
Confidence 67776666543 34699999999882 223344444444432 23566778888889999999
Q ss_pred hcccccccCCCCCHHHHHHHHHH
Q 000823 1094 RRLPRRLMVNLPDAPNRAKILQV 1116 (1267)
Q Consensus 1094 rRFd~vI~~~~Pd~eeR~eIL~~ 1116 (1267)
+|+ ..+.|+.|+.++..+.|..
T Consensus 162 SRc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 SRC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHh-hhhcCCCCCHHHHHHHHHh
Confidence 999 8899999999988777754
No 270
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.20 E-value=5.1e-08 Score=113.59 Aligned_cols=187 Identities=25% Similarity=0.359 Sum_probs=92.8
Q ss_pred HHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000823 915 EFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 994 (1267)
Q Consensus 915 e~e~~li~~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el 994 (1267)
.+...+.+.++| .|.|.+.+|..+.-.+........ ..+...+..-++||.|.||+|||.|.+.+++..
T Consensus 13 ~~~~~l~~s~aP---------~i~g~~~iK~aill~L~~~~~~~~--~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~ 81 (331)
T PF00493_consen 13 NIFDRLANSIAP---------SIYGHEDIKKAILLQLFGGVEKND--PDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA 81 (331)
T ss_dssp THHHCCHHHCSS---------TTTT-HHHHHHHCCCCTT--SCCC--CT-TEE--S--EEEECSCHHCHHHHHHCCCCT-
T ss_pred cHHHHHHHHhCC---------cCcCcHHHHHHHHHHHHhcccccc--ccccccccccceeeccchhhhHHHHHHHHHhhC
Confidence 344445555555 678888887766433332211100 000112234589999999999999999887655
Q ss_pred CCceEEeecc-----ccchhccC---ccHHHHH-HHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhc
Q 000823 995 GANFINISMS-----SITSKWFG---EGEKYVK-AVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1065 (1267)
Q Consensus 995 g~~fi~I~~s-----eL~s~~~G---e~e~~v~-~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~l 1065 (1267)
...+ +++.. .+...... ..+..+. ..+-.|.+ +|++|||+|.+ .......+..++++-...+
T Consensus 82 pr~v-~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~---GiccIDe~dk~-----~~~~~~~l~eaMEqq~isi 152 (331)
T PF00493_consen 82 PRSV-YTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADG---GICCIDEFDKM-----KEDDRDALHEAMEQQTISI 152 (331)
T ss_dssp SSEE-EEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTT---SEEEECTTTT-------CHHHHHHHHHHHCSCEEE
T ss_pred CceE-EECCCCcccCCccceeccccccceeEEeCCchhcccC---ceeeecccccc-----cchHHHHHHHHHHcCeecc
Confidence 3333 22211 12111000 0111111 13334443 89999999988 2223333334333322222
Q ss_pred c--CCcccCCCcEEEEEecCCCC-------------CCcHHHHhcccccccC-CCCCHHHHHHHHHHHHhhC
Q 000823 1066 D--GLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILAKE 1121 (1267)
Q Consensus 1066 d--gl~~~~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~vI~~-~~Pd~eeR~eIL~~ll~k~ 1121 (1267)
. |+...-+.+.-|+|++|... .+++.+++|||.++.+ +.|+.+.-..+.++++...
T Consensus 153 ~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 153 AKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp CTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred chhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 1 22233356788999999754 4677999999988765 7788888888888887654
No 271
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.19 E-value=1.1e-05 Score=98.19 Aligned_cols=165 Identities=21% Similarity=0.306 Sum_probs=92.8
Q ss_pred chhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchh-
Q 000823 934 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 1009 (1267)
Q Consensus 934 ~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~- 1009 (1267)
+.++.|.....+.+.+.+.. + ......+||.|++||||+++|+++.... +.+|+.++|+.+...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~-------~-----~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGR-------L-----SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHH-------H-----hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 34566665555555554431 1 1123479999999999999999998876 579999999876322
Q ss_pred ----ccCccHHHH-------HHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEE
Q 000823 1010 ----WFGEGEKYV-------KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 1078 (1267)
Q Consensus 1010 ----~~Ge~e~~v-------~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlV 1078 (1267)
.+|...+.. ...|+. ...+.|||||||.|- ...+..+.+++++--..-.+.......++.|
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l~~i~~l~-----~~~q~~L~~~l~~~~~~~~~~~~~~~~~~ri 276 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFLDEIGDMP-----LDVQTRLLRVLADGQFYRVGGYAPVKVDVRI 276 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEEeccccCC-----HHHHHHHHHHHhcCcEEeCCCCCeEEeeEEE
Confidence 122211100 011222 234789999999883 1222222222221100000111111346788
Q ss_pred EEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHh
Q 000823 1079 LAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILA 1119 (1267)
Q Consensus 1079 IaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~eeR~e----IL~~ll~ 1119 (1267)
|+||+.. ..+.+.+..|| ..+.+.+|...+|.+ +++.++.
T Consensus 277 i~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~l~ 327 (469)
T PRK10923 277 IAATHQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERREDIPRLARHFLQ 327 (469)
T ss_pred EEeCCCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchhhHHHHHHHHHH
Confidence 8888763 35677888888 456666676665543 5555554
No 272
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.17 E-value=3.4e-05 Score=92.75 Aligned_cols=204 Identities=18% Similarity=0.219 Sum_probs=112.6
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeec-------c
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM-------S 1004 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~-------s 1004 (1267)
-+.+++.-...-..++++++. ++ ..+. . .-+.+-+||+||+|||||+.++.|++++|..+++..- .
T Consensus 79 ~t~eeLAVHkkKI~eVk~WL~-~~---~~~~-~--~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~ 151 (634)
T KOG1970|consen 79 RTLEELAVHKKKISEVKQWLK-QV---AEFT-P--KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPE 151 (634)
T ss_pred ccHHHHhhhHHhHHHHHHHHH-HH---HHhc-c--CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccc
Confidence 356676666655666666654 11 1111 1 1222458999999999999999999999999998762 2
Q ss_pred ccchhccCccHHHH------HHHHHHHHh------------cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhcc
Q 000823 1005 SITSKWFGEGEKYV------KAVFSLASK------------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1066 (1267)
Q Consensus 1005 eL~s~~~Ge~e~~v------~~lF~~A~k------------~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ld 1066 (1267)
.+.....+....+. ......+.+ ..+.+|+|||+-..+... ..+..+.++..+.. .
T Consensus 152 ~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----~~~~f~evL~~y~s-~- 225 (634)
T KOG1970|consen 152 NLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----DSETFREVLRLYVS-I- 225 (634)
T ss_pred cccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----hHHHHHHHHHHHHh-c-
Confidence 22211112221111 112223322 135699999998765431 22344444442221 1
Q ss_pred CCcccCCCcEEEEEec-CCCCCCcHHH--------HhcccccccCCCCCHHHHHHHHHHHHhhCCCCCc----ccHHHHH
Q 000823 1067 GLRTKDTERILVLAAT-NRPFDLDEAV--------IRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD----VDFDAIA 1133 (1267)
Q Consensus 1067 gl~~~~~~~VlVIaTT-N~p~~Ld~aL--------lrRFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~d----vdl~~LA 1133 (1267)
...++++|.|- +.++..++.. .-|. .+|.|.+-...-.++.|+.++..+..... -+...+-
T Consensus 226 -----g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 226 -----GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred -----CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 12233443332 3333333221 1155 56888888888888888888876533211 1123333
Q ss_pred HHcCCCCHHHHHHHHhhhhhHH
Q 000823 1134 NMTDGYSGSDLKVIFLSHSLIC 1155 (1267)
Q Consensus 1134 ~~TeGySg~DL~~Lv~~a~l~~ 1155 (1267)
.++.| +++||+.++....+.+
T Consensus 300 ~i~~~-s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 300 LICQG-SGGDIRSAINSLQLSS 320 (634)
T ss_pred HHHHh-cCccHHHHHhHhhhhc
Confidence 34443 5569998888877764
No 273
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=5.8e-06 Score=93.59 Aligned_cols=87 Identities=25% Similarity=0.436 Sum_probs=66.0
Q ss_pred hcccCCccccccccccccccc-hhHHHHHHHHHhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhC
Q 000823 415 AGILDGTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG 493 (1267)
Q Consensus 415 ~~i~~~~~~~vsfd~FPYyls-e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~ 493 (1267)
..+-.|++|.--.|+ |-+. |..|.+|-=|+|-|-|.-.+...-.+..=.---|||-||.| ..++.||+.||+.++
T Consensus 47 ~~lPtP~eik~~Ld~--YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTG--sGKTlLAqTLAk~Ln 122 (408)
T COG1219 47 SELPTPKEIKAHLDE--YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTG--SGKTLLAQTLAKILN 122 (408)
T ss_pred ccCCChHHHHHHhhh--heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCC--CcHHHHHHHHHHHhC
Confidence 345667777777777 5565 99999999999999776433222222333334699999999 799999999999999
Q ss_pred CeEEEEeccccC
Q 000823 494 AKLLIFDSHSLL 505 (1267)
Q Consensus 494 a~LL~~D~~~~~ 505 (1267)
+++-|-|.+.|.
T Consensus 123 VPFaiADATtLT 134 (408)
T COG1219 123 VPFAIADATTLT 134 (408)
T ss_pred CCeeeccccchh
Confidence 999999986653
No 274
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.14 E-value=1.2e-05 Score=93.00 Aligned_cols=70 Identities=23% Similarity=0.379 Sum_probs=49.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhccCcc-HHHHHHHHHHHHhcCCeEEEEccchhh
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~~Ge~-e~~v~~lF~~A~k~~PsIIfIDEID~L 1041 (1267)
.++++|+||+|||||+||.|+|+++ |..+..+.+++++..+.... ...+...+.... ...||+||||..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 4689999999999999999999998 78888888887755432110 011223333332 3569999999743
No 275
>PF13173 AAA_14: AAA domain
Probab=98.13 E-value=5.7e-06 Score=83.24 Aligned_cols=69 Identities=29% Similarity=0.433 Sum_probs=47.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhh
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg--~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L 1041 (1267)
+-++|+||+|+|||++++.+++.+. -+++.+++.+.......... +.+.+.........+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 3689999999999999999999886 77888887765332111111 222222222225689999999977
No 276
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.10 E-value=3e-05 Score=93.79 Aligned_cols=133 Identities=23% Similarity=0.361 Sum_probs=78.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchh-----ccCccHHHH-------HHHHHHHHhcCCeEEEE
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKYV-------KAVFSLASKIAPSVIFV 1035 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~-----~~Ge~e~~v-------~~lF~~A~k~~PsIIfI 1035 (1267)
..+|++|++||||+++|+++.... +.+|+.++|..+... .+|...... ...|..| ..++|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEE
Confidence 479999999999999999998765 679999999876322 222110000 0122222 3479999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHH
Q 000823 1036 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAP 1108 (1267)
Q Consensus 1036 DEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~e 1108 (1267)
||||.|- ...+..+.++++.--....+.......++.||+||+.. ..+.+.+..|+ ..+.+..|...
T Consensus 244 d~i~~l~-----~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l-~~~~i~~ppLr 317 (457)
T PRK11361 244 DEIGEMP-----LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRL-NVIHLILPPLR 317 (457)
T ss_pred echhhCC-----HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 9999883 11222222222111000001111112467889999864 35666777777 45777888877
Q ss_pred HHHH
Q 000823 1109 NRAK 1112 (1267)
Q Consensus 1109 eR~e 1112 (1267)
+|.+
T Consensus 318 eR~~ 321 (457)
T PRK11361 318 DRRE 321 (457)
T ss_pred hchh
Confidence 7754
No 277
>PRK06921 hypothetical protein; Provisional
Probab=98.09 E-value=1e-05 Score=91.87 Aligned_cols=67 Identities=25% Similarity=0.361 Sum_probs=45.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchh
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDS 1040 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el----g~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~ 1040 (1267)
.+++|+||+|+|||+|+.|||+++ +..++.++..+++....... ......+... ....+|+|||++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 589999999999999999999986 57788888776654321110 1111222222 2457999999953
No 278
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.08 E-value=1.3e-05 Score=97.13 Aligned_cols=143 Identities=22% Similarity=0.335 Sum_probs=78.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchh-----ccCccHHH----HHHHHHHHHhcCCeEEEEccc
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKY----VKAVFSLASKIAPSVIFVDEV 1038 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~-----~~Ge~e~~----v~~lF~~A~k~~PsIIfIDEI 1038 (1267)
..+++.|.+||||+++|+++.... +.+|+.++|..+... .+|..... .............+.||||||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei 237 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEI 237 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEch
Confidence 479999999999999999998775 679999999876332 12211100 000000011223579999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHH-
Q 000823 1039 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNR- 1110 (1267)
Q Consensus 1039 D~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~eeR- 1110 (1267)
+.|- ...+..+.+++.+-....-+.......++.||++|+.. ..+.+.+..|+ ..+.+.+|...+|
T Consensus 238 ~~l~-----~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl-~~~~i~lPpLr~R~ 311 (463)
T TIGR01818 238 GDMP-----LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRL-NVIRIHLPPLRERR 311 (463)
T ss_pred hhCC-----HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHh-CcceecCCCcccch
Confidence 9882 11122222222110000001101112356788888754 35667788887 3455556655444
Q ss_pred ---HHHHHHHHh
Q 000823 1111 ---AKILQVILA 1119 (1267)
Q Consensus 1111 ---~eIL~~ll~ 1119 (1267)
..+++.++.
T Consensus 312 ~Di~~l~~~~l~ 323 (463)
T TIGR01818 312 EDIPRLARHFLA 323 (463)
T ss_pred hhHHHHHHHHHH
Confidence 445555543
No 279
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.08 E-value=4.1e-06 Score=89.53 Aligned_cols=69 Identities=28% Similarity=0.477 Sum_probs=46.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhccCcc-HHHHHHHHHHHHhcCCeEEEEccchh
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVIFVDEVDS 1040 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~~Ge~-e~~v~~lF~~A~k~~PsIIfIDEID~ 1040 (1267)
..+++|+||+|+|||+||.++++++ |..+..++.++++...-... .......+.... ...+|+|||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 3689999999999999999999887 88999999988865532211 111223333333 347999999963
No 280
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.06 E-value=3.1e-06 Score=86.27 Aligned_cols=105 Identities=22% Similarity=0.432 Sum_probs=63.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCC
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1047 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg---~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 1047 (1267)
..|||+|++||||+++|++|....+ .+|+.++|..+. ..+++.+ ....|||+|||.|-
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~----- 82 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS----- 82 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS------
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC-----
Confidence 4699999999999999999998774 467777776533 3344444 56899999999882
Q ss_pred CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhcccccccCCCC
Q 000823 1048 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLP 1105 (1267)
Q Consensus 1048 ~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~~~~P 1105 (1267)
......++..+.... ..++.+|+++..+ ..+++.+..||. .+.+.+|
T Consensus 83 -------~~~Q~~L~~~l~~~~---~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~-~~~i~lP 136 (138)
T PF14532_consen 83 -------PEAQRRLLDLLKRQE---RSNVRLIASSSQDLEELVEEGRFSPDLYYRLS-QLEIHLP 136 (138)
T ss_dssp -------HHHHHHHHHHHHHCT---TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS-TCEEEE-
T ss_pred -------HHHHHHHHHHHHhcC---CCCeEEEEEeCCCHHHHhhccchhHHHHHHhC-CCEEeCC
Confidence 112222222222221 2344556665542 246677777874 3344444
No 281
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.05 E-value=2.2e-05 Score=78.08 Aligned_cols=97 Identities=15% Similarity=0.316 Sum_probs=60.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------CCceEEeeccccch----------h----ccC--ccHHHHHHHHHHHH
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA--------GANFINISMSSITS----------K----WFG--EGEKYVKAVFSLAS 1026 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el--------g~~fi~I~~seL~s----------~----~~G--e~e~~v~~lF~~A~ 1026 (1267)
+.++|+||+|+|||++++.++..+ ..+++.++++.... . ... ........+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 579999999999999999999987 67888888754320 0 011 12333444555555
Q ss_pred hcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEec
Q 000823 1027 KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT 1082 (1267)
Q Consensus 1027 k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTT 1082 (1267)
+....+|+|||+|.|. . ..+++.+...++ ..+-+++++++.
T Consensus 85 ~~~~~~lviDe~~~l~-~----------~~~l~~l~~l~~----~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-S----------DEFLEFLRSLLN----ESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHH-T----------HHHHHHHHHHTC----SCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcC-C----------HHHHHHHHHHHh----CCCCeEEEEECh
Confidence 5555699999999874 1 344555544444 223456666655
No 282
>PRK06526 transposase; Provisional
Probab=98.05 E-value=7.5e-06 Score=92.27 Aligned_cols=69 Identities=25% Similarity=0.384 Sum_probs=47.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhccCc-cHHHHHHHHHHHHhcCCeEEEEccchhh
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~~Ge-~e~~v~~lF~~A~k~~PsIIfIDEID~L 1041 (1267)
.+++|+||||||||+||.+|+.++ |..++.+++.+++...... ..+.....+... ..+.+|+|||++.+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~ 171 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYI 171 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccC
Confidence 589999999999999999999876 7777777777765543211 011122222222 24689999999866
No 283
>PRK15115 response regulator GlrR; Provisional
Probab=98.01 E-value=6.8e-05 Score=90.51 Aligned_cols=141 Identities=22% Similarity=0.373 Sum_probs=80.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhc-----cCccHHHH-------HHHHHHHHhcCCeEEEE
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKYV-------KAVFSLASKIAPSVIFV 1035 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~-----~Ge~e~~v-------~~lF~~A~k~~PsIIfI 1035 (1267)
..++|+|++||||+++|+++.... +.+|+.++|..+.... +|...+.. ..+|+ ....++|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ---AAEGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEE---ECCCCEEEE
Confidence 469999999999999999998875 5799999998763221 11110000 00122 223479999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHH
Q 000823 1036 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAP 1108 (1267)
Q Consensus 1036 DEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~e 1108 (1267)
||||.|- ...+..+.+++..-....-+.......++.+|+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 235 ~~i~~l~-----~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr 308 (444)
T PRK15115 235 DEIGDMP-----APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIPALA 308 (444)
T ss_pred EccccCC-----HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCCChH
Confidence 9999882 22222222222211100011111112467888988863 24445565666 45677788888
Q ss_pred HHHH----HHHHHHhh
Q 000823 1109 NRAK----ILQVILAK 1120 (1267)
Q Consensus 1109 eR~e----IL~~ll~k 1120 (1267)
+|.+ +++.++.+
T Consensus 309 ~R~eDi~~l~~~~l~~ 324 (444)
T PRK15115 309 ERTEDIPLLANHLLRQ 324 (444)
T ss_pred hccccHHHHHHHHHHH
Confidence 7753 44555443
No 284
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.00 E-value=1.5e-05 Score=90.00 Aligned_cols=70 Identities=24% Similarity=0.436 Sum_probs=50.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhccCccHH-HH-HHHHHHHHhcCCeEEEEccchhh
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK-YV-KAVFSLASKIAPSVIFVDEVDSM 1041 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~~Ge~e~-~v-~~lF~~A~k~~PsIIfIDEID~L 1041 (1267)
..+++|+||||+|||+||.|||+++ |..++.++.++++...-..... .. ..+..... ...+|+||||...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCc
Confidence 4689999999999999999999988 8999999999987654321111 11 11222122 3469999999754
No 285
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.99 E-value=2.7e-05 Score=93.38 Aligned_cols=84 Identities=27% Similarity=0.460 Sum_probs=65.6
Q ss_pred ccCCccccccccccccccc-hhHHHHHHHHHhhcccCCcccccc-cccccCCCceeeecCCCchHHHHHHHHHHHhHhCC
Q 000823 417 ILDGTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDHAKYT-SELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA 494 (1267)
Q Consensus 417 i~~~~~~~vsfd~FPYyls-e~tk~~L~~~~~~hL~~~~~~~~~-~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a 494 (1267)
+..|++|.-.+++ |.+. |+.|.+|..|+|-|.+.-...... .+.....+.|||.||+| ..+++|||+||+.+++
T Consensus 59 ~~~p~~i~~~L~~--~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~G--tGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 59 LPTPKEIKAHLDQ--YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTG--SGKTLLAQTLARILDV 134 (412)
T ss_pred CCCHHHHHHHHhh--HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCC--CCHHHHHHHHHHHhCC
Confidence 6778888888887 4454 889999999999887775332111 13444567899999999 8999999999999999
Q ss_pred eEEEEecccc
Q 000823 495 KLLIFDSHSL 504 (1267)
Q Consensus 495 ~LL~~D~~~~ 504 (1267)
++..+|.+.+
T Consensus 135 pf~~id~~~l 144 (412)
T PRK05342 135 PFAIADATTL 144 (412)
T ss_pred Cceecchhhc
Confidence 9999887554
No 286
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.99 E-value=4.8e-05 Score=91.12 Aligned_cols=84 Identities=26% Similarity=0.442 Sum_probs=62.5
Q ss_pred ccCCccccccccccccccc-hhHHHHHHHHHhhcccCCcc--cccc-cccccCCCceeeecCCCchHHHHHHHHHHHhHh
Q 000823 417 ILDGTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDH--AKYT-SELTTVNPRILLSGPAGSEIYQEMLAKALAHYF 492 (1267)
Q Consensus 417 i~~~~~~~vsfd~FPYyls-e~tk~~L~~~~~~hL~~~~~--~~~~-~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f 492 (1267)
+..+++|.-.++++ .+. |+.|..|.-|+|-|.+.-.. .... .+..-....|||.||+| ..+++|||+||+.+
T Consensus 65 ~~~p~~i~~~L~~~--ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~G--sGKT~lAraLA~~l 140 (413)
T TIGR00382 65 LPTPKEIKAHLDEY--VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTG--SGKTLLAQTLARIL 140 (413)
T ss_pred CCCHHHHHHHhcce--ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCC--cCHHHHHHHHHHhc
Confidence 55677777777773 344 99999999999999887433 1111 12233456899999999 89999999999999
Q ss_pred CCeEEEEecccc
Q 000823 493 GAKLLIFDSHSL 504 (1267)
Q Consensus 493 ~a~LL~~D~~~~ 504 (1267)
++++.++|.+.|
T Consensus 141 ~~pf~~~da~~L 152 (413)
T TIGR00382 141 NVPFAIADATTL 152 (413)
T ss_pred CCCeEEechhhc
Confidence 999888776443
No 287
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.98 E-value=7.6e-06 Score=95.47 Aligned_cols=74 Identities=28% Similarity=0.558 Sum_probs=63.4
Q ss_pred CCeeEEcCCCCcceeecCCC--CccceEEEEEEecCCceEEEEEEecCCceEEcCeeecCCCe-eEccCCCEEEEeecCC
Q 000823 144 ASIFTVGSSRQCNFPLKDQA--ISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKNTS-CELRSGDEVVFGSLGN 220 (1267)
Q Consensus 144 ~~~~tvGr~~~Cd~~l~~~~--~s~~~c~i~~~~~~~~~~~~Led~s~nGt~VNg~~~gk~~~-~~L~~gDeI~f~~~~~ 220 (1267)
....+|||+..||-.|.|+. ||+-||+|..- +|. .||.|+|+|||+|||..+-.|.. +-|..||+|.++ +
T Consensus 25 ~~~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~--dg~--f~L~DtS~g~l~VNgs~~~~g~~~~RLqqGd~i~iG---~ 97 (430)
T COG3456 25 RGGGVIGRSPDCDWQIDDPERFVSKQHCTISYR--DGG--FCLTDTSNGGLLVNGSDLPLGEGSARLQQGDEILIG---R 97 (430)
T ss_pred cCCcccccCCCCCccccCcccccchhheEEEec--CCe--EEEEecCCCceeecccccCCCCCccccccCCEEeec---c
Confidence 35689999999999999876 89999999843 333 69999998889999999999877 999999999873 3
Q ss_pred eEEEEE
Q 000823 221 HAYIFQ 226 (1267)
Q Consensus 221 ~ayiF~ 226 (1267)
|||.
T Consensus 98 --y~i~ 101 (430)
T COG3456 98 --YIIR 101 (430)
T ss_pred --EEEE
Confidence 7776
No 288
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.96 E-value=1.3e-05 Score=91.37 Aligned_cols=139 Identities=22% Similarity=0.341 Sum_probs=79.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-Cc--eEEeeccccchhccCccHHHHHHHHHHH----Hh-------cCCeEEEEc
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAG-AN--FINISMSSITSKWFGEGEKYVKAVFSLA----SK-------IAPSVIFVD 1036 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg-~~--fi~I~~seL~s~~~Ge~e~~v~~lF~~A----~k-------~~PsIIfID 1036 (1267)
+.+||+||+|||||++++.+...+. .. ...+.++... +...+..+.+.. ++ ....|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 5799999999999999998877663 22 3334443221 122222221111 11 123599999
Q ss_pred cchhhhcCCCCCchHHHHHHHHHhhhhhccCCcc------cCCCcEEEEEecCCC---CCCcHHHHhcccccccCCCCCH
Q 000823 1037 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDTERILVLAATNRP---FDLDEAVIRRLPRRLMVNLPDA 1107 (1267)
Q Consensus 1037 EID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~------~~~~~VlVIaTTN~p---~~Ld~aLlrRFd~vI~~~~Pd~ 1107 (1267)
|+..-... .-+.+.. ..++.+++.. .|... ..=.++.+||+++.. ..+++.++|.| .++.++.|+.
T Consensus 108 DlN~p~~d--~ygtq~~-iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~ 182 (272)
T PF12775_consen 108 DLNMPQPD--KYGTQPP-IELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSD 182 (272)
T ss_dssp TTT-S-----TTS--HH-HHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TC
T ss_pred ccCCCCCC--CCCCcCH-HHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCCh
Confidence 99844322 2222222 2344444322 12111 112578889998864 35888999999 7899999999
Q ss_pred HHHHHHHHHHHhh
Q 000823 1108 PNRAKILQVILAK 1120 (1267)
Q Consensus 1108 eeR~eIL~~ll~k 1120 (1267)
+....|+..++..
T Consensus 183 ~sl~~If~~il~~ 195 (272)
T PF12775_consen 183 ESLNTIFSSILQS 195 (272)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988864
No 289
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00052 Score=78.73 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=78.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceE--------Eeeccccchh-ccC----ccHHHHHHHHHHHHhc----CCe
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEAGANFI--------NISMSSITSK-WFG----EGEKYVKAVFSLASKI----APS 1031 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~elg~~fi--------~I~~seL~s~-~~G----e~e~~v~~lF~~A~k~----~Ps 1031 (1267)
-+..+||+||.|+||+.+|.++|..+-+.-. .-..+++.-- -.| -.-..++.+...+... ...
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 3468999999999999999999998844210 0111222100 011 1233455555555443 246
Q ss_pred EEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCC
Q 000823 1032 VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLP 1105 (1267)
Q Consensus 1032 IIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~P 1105 (1267)
|++||++|.|- ....|.|+..++. ++.++++|..|+.++.+.|.+++|+ ..+.|+.+
T Consensus 98 v~ii~~ad~mt------------~~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 98 IYIIHEADRMT------------LDAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred EEEEechhhcC------------HHHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 99999999883 2334555555554 3567899999999999999999999 66777654
No 290
>PRK09183 transposase/IS protein; Provisional
Probab=97.88 E-value=2.6e-05 Score=88.15 Aligned_cols=70 Identities=27% Similarity=0.436 Sum_probs=48.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhccCc-cHHHHHHHHHHHHhcCCeEEEEccchhh
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~~Ge-~e~~v~~lF~~A~k~~PsIIfIDEID~L 1041 (1267)
.+++|+||+|||||+||.+++..+ |..+..+++.++...+... ....+..++.... ..+.+++|||++.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~ 176 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYL 176 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccC
Confidence 579999999999999999998765 7788888877765432111 1112334444332 35689999999865
No 291
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.88 E-value=9.3e-05 Score=85.01 Aligned_cols=152 Identities=24% Similarity=0.357 Sum_probs=97.2
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeecccc--
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI-- 1006 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL-- 1006 (1267)
..|+.+++.....+.+.+.... +. .+. ..+||.|.+||||-.+|++.-... ..+|+.++|+.+
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k-------~A--mlD---APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQK-------LA--MLD---APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHH-------hh--ccC---CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 3456666666555555443321 11 112 359999999999999999986655 789999999765
Q ss_pred ---chhccCccH--HHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc-------CCC
Q 000823 1007 ---TSKWFGEGE--KYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTE 1074 (1267)
Q Consensus 1007 ---~s~~~Ge~e--~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~-------~~~ 1074 (1267)
-+..+|..+ .--..+|+.|.. ..+|+|||..|. .++...|+..+....-. -..
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmS------------p~lQaKLLRFL~DGtFRRVGee~Ev~v 333 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMS------------PRLQAKLLRFLNDGTFRRVGEDHEVHV 333 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhcC------------HHHHHHHHHHhcCCceeecCCcceEEE
Confidence 223344433 222457887766 889999998773 33444444444322211 124
Q ss_pred cEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHH
Q 000823 1075 RILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRA 1111 (1267)
Q Consensus 1075 ~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~eeR~ 1111 (1267)
+|-||+||..+ ..+-+.+.-|+ .++.+..|...+|.
T Consensus 334 dVRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~ 376 (511)
T COG3283 334 DVRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERP 376 (511)
T ss_pred EEEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCc
Confidence 78999999764 34455666688 67888888777764
No 292
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.87 E-value=6.7e-05 Score=90.25 Aligned_cols=143 Identities=19% Similarity=0.308 Sum_probs=79.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhc-----cCccHHHH----HHHHHHHHhcCCeEEEEccc
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKYV----KAVFSLASKIAPSVIFVDEV 1038 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~-----~Ge~e~~v----~~lF~~A~k~~PsIIfIDEI 1038 (1267)
..++++|.+|+||+++|+++.... +.+|+.++|..+.... +|...... ............++||||||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei 242 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEecc
Confidence 579999999999999999997665 5799999998653221 12111000 00000011224589999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHH
Q 000823 1039 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRA 1111 (1267)
Q Consensus 1039 D~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~eeR~ 1111 (1267)
+.|- ...+..+.+++..-.....+.......++.+|+||+.. ..+.+.+..|| ..+.+..|...+|.
T Consensus 243 ~~l~-----~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ppLreR~ 316 (441)
T PRK10365 243 GDIS-----PMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVPSLRQRR 316 (441)
T ss_pred ccCC-----HHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChhhcc
Confidence 9883 11222221222111101111111112356788887653 34556666677 45677778777665
Q ss_pred H----HHHHHHh
Q 000823 1112 K----ILQVILA 1119 (1267)
Q Consensus 1112 e----IL~~ll~ 1119 (1267)
+ +++.++.
T Consensus 317 ~Di~~l~~~~l~ 328 (441)
T PRK10365 317 EDIPLLAGHFLQ 328 (441)
T ss_pred hhHHHHHHHHHH
Confidence 4 4444443
No 293
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.85 E-value=0.00022 Score=80.87 Aligned_cols=183 Identities=17% Similarity=0.221 Sum_probs=108.5
Q ss_pred ccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C--CceEEeeccc------
Q 000823 937 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---G--ANFINISMSS------ 1005 (1267)
Q Consensus 937 I~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g--~~fi~I~~se------ 1005 (1267)
+.|+.-+++.+-..+...+.. ....+| --+=|+|++||||.++++.||+.+ | -+++..-.+.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n------~~p~KP-LvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWAN------PNPRKP-LVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcC------CCCCCC-eEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 456666666666655543322 222333 456699999999999999999877 2 2222211111
Q ss_pred -cchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC
Q 000823 1006 -ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1084 (1267)
Q Consensus 1006 -L~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~ 1084 (1267)
.+..| .++...++-.-++..+.+|+++||+|.|- ..+-.++..|+.........+..+.|+|.-+|.
T Consensus 157 ~~ie~Y---k~eL~~~v~~~v~~C~rslFIFDE~DKmp---------~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~ 224 (344)
T KOG2170|consen 157 SKIEDY---KEELKNRVRGTVQACQRSLFIFDEVDKLP---------PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNA 224 (344)
T ss_pred HHHHHH---HHHHHHHHHHHHHhcCCceEEechhhhcC---------HhHHHHHhhhhccccccccccccceEEEEEcCC
Confidence 11111 12333455666677788999999999882 223344444444322333234567788877775
Q ss_pred C-----------------------CCCcHHHHh-------------------cccccccCCCCCHHHHHHHHHHHHhhCC
Q 000823 1085 P-----------------------FDLDEAVIR-------------------RLPRRLMVNLPDAPNRAKILQVILAKED 1122 (1267)
Q Consensus 1085 p-----------------------~~Ld~aLlr-------------------RFd~vI~~~~Pd~eeR~eIL~~ll~k~~ 1122 (1267)
- ..+.++++. ++|..|.|-+.+...-...++..+.+.+
T Consensus 225 gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~rg 304 (344)
T KOG2170|consen 225 GGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKRG 304 (344)
T ss_pred cchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhcc
Confidence 1 122222221 3455577777888888888888888888
Q ss_pred CCCccc-HHHHHHHcCC
Q 000823 1123 LSPDVD-FDAIANMTDG 1138 (1267)
Q Consensus 1123 l~~dvd-l~~LA~~TeG 1138 (1267)
+..|.+ ++.+++...-
T Consensus 305 ~~~d~~~~erva~~l~f 321 (344)
T KOG2170|consen 305 LAPDQDFVERVANSLSF 321 (344)
T ss_pred cccchHHHHHHHHhhcc
Confidence 776655 4667766653
No 294
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.82 E-value=7.5e-05 Score=75.94 Aligned_cols=71 Identities=24% Similarity=0.456 Sum_probs=48.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhc----------------------cCc--cHHHHHHHHHHH
Q 000823 973 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----------------------FGE--GEKYVKAVFSLA 1025 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~----------------------~Ge--~e~~v~~lF~~A 1025 (1267)
++|+||||+|||+++..++..+ +.+++.++........ ... ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998887 5677777664332110 001 111122344556
Q ss_pred HhcCCeEEEEccchhhhc
Q 000823 1026 SKIAPSVIFVDEVDSMLG 1043 (1267)
Q Consensus 1026 ~k~~PsIIfIDEID~L~~ 1043 (1267)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 677889999999998864
No 295
>CHL00181 cbbX CbbX; Provisional
Probab=97.82 E-value=3.9e-05 Score=88.04 Aligned_cols=133 Identities=18% Similarity=0.153 Sum_probs=85.1
Q ss_pred ecccCCCCCCCC-----CCCC-C-----CCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchh
Q 000823 633 VRFDKPIPDGVD-----LGGQ-C-----EGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAE 701 (1267)
Q Consensus 633 v~Fd~~~~~~~~-----l~~~-c-----~~~~~ff~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~ 701 (1267)
|.|.+|||+||| ++.. | ..++.++++ .++....|+|+. ++ ...+++.+ ..+-||||||++
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~-~~~l~~~~~g~~-~~----~~~~~l~~---a~ggVLfIDE~~ 132 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT-RDDLVGQYIGHT-AP----KTKEVLKK---AMGGVLFIDEAY 132 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec-HHHHHHHHhccc-hH----HHHHHHHH---ccCCEEEEEccc
Confidence 789999999999 2211 1 222322222 233445566652 11 22334444 344699999999
Q ss_pred hhhcC------CcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCC
Q 000823 702 KSIAG------NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGK 775 (1267)
Q Consensus 702 ~~l~g------~~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~ 775 (1267)
.+... ..+..+.|...|+...++++||++++..+ ++..+
T Consensus 133 ~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~-----------------------~~~~~------------ 177 (287)
T CHL00181 133 YLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDR-----------------------MDKFY------------ 177 (287)
T ss_pred hhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH-----------------------HHHHH------------
Confidence 86431 23455556666666678899999976432 11100
Q ss_pred CchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhh
Q 000823 776 EIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 812 (1267)
Q Consensus 776 ~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~ 812 (1267)
..+.+|.+||+..|+|+.++.+++.+||+..+.+
T Consensus 178 ---~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 178 ---ESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred ---hcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 1357889999999999999999999999987765
No 296
>PF05729 NACHT: NACHT domain
Probab=97.81 E-value=0.00012 Score=75.10 Aligned_cols=140 Identities=14% Similarity=0.233 Sum_probs=74.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC--------Cc-eEEeeccccchh------------ccCccHHHHHH-HHHHHHhcC
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAG--------AN-FINISMSSITSK------------WFGEGEKYVKA-VFSLASKIA 1029 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg--------~~-fi~I~~seL~s~------------~~Ge~e~~v~~-lF~~A~k~~ 1029 (1267)
-++|+|+||+|||++++.++..+. .. ++.+.+.++... ........+.. ....+.+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999998771 12 223333332111 01111111122 222334556
Q ss_pred CeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhccc--ccccCCCCCH
Q 000823 1030 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLP--RRLMVNLPDA 1107 (1267)
Q Consensus 1030 PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd--~vI~~~~Pd~ 1107 (1267)
..+|+||.+|.+...... .........+..++ .... ..++-+|.|++. ..... +.+++. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~---~~~~---~~~~~liit~r~-~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLL---PQAL---PPGVKLIITSRP-RAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHh---hhcc---CCCCeEEEEEcC-ChHHH-HHHhcCCCcEEEECCCCH
Confidence 689999999998643211 01111222333333 2211 122333344432 22212 444332 3578888899
Q ss_pred HHHHHHHHHHHhh
Q 000823 1108 PNRAKILQVILAK 1120 (1267)
Q Consensus 1108 eeR~eIL~~ll~k 1120 (1267)
+++.++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988753
No 297
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.79 E-value=0.00012 Score=81.47 Aligned_cols=147 Identities=19% Similarity=0.197 Sum_probs=84.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCch
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1050 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~ 1050 (1267)
.+-.++||.|||||.+++++|+.+|.+++.++|++.++ ...+.++|.-+.... +-+++||+++|- ...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~G-aW~cfdefnrl~-----~~v 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQSG-AWLCFDEFNRLS-----EEV 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHHT--EEEEETCCCSS-----HHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhcC-chhhhhhhhhhh-----HHH
Confidence 36678999999999999999999999999999987543 456778887666654 799999999872 111
Q ss_pred HHHHHHHHHhhhhhccCC---------cccCCCcEEEEEecCC----CCCCcHHHHhcccccccCCCCCHHHHHHHHHHH
Q 000823 1051 HEAMRKMKNEFMVNWDGL---------RTKDTERILVLAATNR----PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVI 1117 (1267)
Q Consensus 1051 ~~~~~~il~eLL~~ldgl---------~~~~~~~VlVIaTTN~----p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~l 1117 (1267)
-......+..+...+..- ...-+...-+..|.|. ...|++.++.-| +.+.+..||.....+++
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~--- 176 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEIL--- 176 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHH---
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHH---
Confidence 112112222222111110 0001123445566664 357888888888 78889999887765554
Q ss_pred HhhCCCCCcccHHHHHHHc
Q 000823 1118 LAKEDLSPDVDFDAIANMT 1136 (1267)
Q Consensus 1118 l~k~~l~~dvdl~~LA~~T 1136 (1267)
+-..++ .+...||++.
T Consensus 177 L~s~GF---~~a~~La~kl 192 (231)
T PF12774_consen 177 LLSQGF---KDAKSLAKKL 192 (231)
T ss_dssp HHCCCT---SSHHHHHHHH
T ss_pred HHHcCc---hhHHHHHHHH
Confidence 444443 3445555543
No 298
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.78 E-value=0.00033 Score=90.68 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=30.7
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEec
Q 000823 466 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 501 (1267)
Q Consensus 466 ~~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~~D~ 501 (1267)
.+.+||.|||| +.+.+|||+||+.++.++.-++.
T Consensus 347 ~~~lll~GppG--~GKT~lAk~iA~~l~~~~~~i~~ 380 (775)
T TIGR00763 347 GPILCLVGPPG--VGKTSLGKSIAKALNRKFVRFSL 380 (775)
T ss_pred CceEEEECCCC--CCHHHHHHHHHHHhcCCeEEEeC
Confidence 34699999999 99999999999999999888875
No 299
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.74 E-value=3.5e-05 Score=99.00 Aligned_cols=167 Identities=22% Similarity=0.289 Sum_probs=111.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhcc-----Cc--cHHHHHHHH---HH--HHhcCCeEEEEccch
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF-----GE--GEKYVKAVF---SL--ASKIAPSVIFVDEVD 1039 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~-----Ge--~e~~v~~lF---~~--A~k~~PsIIfIDEID 1039 (1267)
.+|++||||+|||+.+.++|.++|+.++.++.++..++.. |. ....+...| .. ......-||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 3699999999999999999999999999999987644322 11 112233333 00 011123499999999
Q ss_pred hhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHh
Q 000823 1040 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILA 1119 (1267)
Q Consensus 1040 ~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~eIL~~ll~ 1119 (1267)
.+++ .+ +..+..+..... ...+-+|+++|.........+.|....++|..|+.+.+...+..++.
T Consensus 439 ~~~~-~d--------Rg~v~~l~~l~~------ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~ 503 (871)
T KOG1968|consen 439 GMFG-ED--------RGGVSKLSSLCK------KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICK 503 (871)
T ss_pred cccc-hh--------hhhHHHHHHHHH------hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhc
Confidence 8865 11 222223322222 13346788888877766656666546699999999999999999888
Q ss_pred hCCCC-CcccHHHHHHHcCCCCHHHHHHHHhhhhhHHHH
Q 000823 1120 KEDLS-PDVDFDAIANMTDGYSGSDLKVIFLSHSLICNV 1157 (1267)
Q Consensus 1120 k~~l~-~dvdl~~LA~~TeGySg~DL~~Lv~~a~l~~~v 1157 (1267)
.+.+. .+-.++++.+.+ ++||+++++...+....
T Consensus 504 se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~~~~~ 538 (871)
T KOG1968|consen 504 SEGIKISDDVLEEISKLS----GGDIRQIIMQLQFWSLS 538 (871)
T ss_pred ccceecCcHHHHHHHHhc----ccCHHHHHHHHhhhhcc
Confidence 77654 333456666655 77999998887777443
No 300
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.74 E-value=0.00083 Score=75.94 Aligned_cols=155 Identities=15% Similarity=0.092 Sum_probs=83.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--hC--Cc-eEEeecccc----------chh---c------cCccHHHHHHHHHH
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATE--AG--AN-FINISMSSI----------TSK---W------FGEGEKYVKAVFSL 1024 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~e--lg--~~-fi~I~~seL----------~s~---~------~Ge~e~~v~~lF~~ 1024 (1267)
..+-|.|+|++|+|||+||+.+++. .. +. ++.++...- ... . ....+.....+.+.
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 4467999999999999999999987 42 22 223333211 111 0 01122333344443
Q ss_pred HHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCC
Q 000823 1025 ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNL 1104 (1267)
Q Consensus 1025 A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~ 1104 (1267)
. +..+.+|+||+++... .+..+...+.. ...+.-||.||...... ..+... ...+.+..
T Consensus 98 L-~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~----~~~~~kilvTTR~~~v~-~~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 98 L-KDKRCLLVLDDVWDEE--------------DLEELREPLPS----FSSGSKILVTTRDRSVA-GSLGGT-DKVIELEP 156 (287)
T ss_dssp H-CCTSEEEEEEEE-SHH--------------HH-------HC----HHSS-EEEEEESCGGGG-TTHHSC-EEEEECSS
T ss_pred h-ccccceeeeeeecccc--------------ccccccccccc----ccccccccccccccccc-cccccc-cccccccc
Confidence 3 3448999999998441 12222211111 12234566677653321 111111 35788999
Q ss_pred CCHHHHHHHHHHHHhhCC----CCCcccHHHHHHHcCCCCHHHHH
Q 000823 1105 PDAPNRAKILQVILAKED----LSPDVDFDAIANMTDGYSGSDLK 1145 (1267)
Q Consensus 1105 Pd~eeR~eIL~~ll~k~~----l~~dvdl~~LA~~TeGySg~DL~ 1145 (1267)
.+.++-.++|........ -..+.....|++.+.| .+-.|+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~ 200 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALK 200 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 999999999999876543 1122346788999887 566665
No 301
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.67 E-value=4.5e-05 Score=87.34 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=87.5
Q ss_pred cceecccCCCCCCCCC-C-----CCCCC-----CcccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEc
Q 000823 630 KIGVRFDKPIPDGVDL-G-----GQCEG-----GHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMK 698 (1267)
Q Consensus 630 kvgv~Fd~~~~~~~~l-~-----~~c~~-----~~~ff~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~ 698 (1267)
..+|.|.+|||+|||. | ..|.. +.-++++. ++.++.|.|+. ...+..+++ + ..+-|||||
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~-~~l~~~~~g~~--~~~~~~~~~---~---a~~gvL~iD 128 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR-DDLVGQYIGHT--APKTKEILK---R---AMGGVLFID 128 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH-HHHhHhhcccc--hHHHHHHHH---H---ccCcEEEEe
Confidence 3478999999999993 2 12222 22223332 34456777762 223333433 3 344799999
Q ss_pred chhhhhcC------CcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccc
Q 000823 699 DAEKSIAG------NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHD 772 (1267)
Q Consensus 699 di~~~l~g------~~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~ 772 (1267)
|++.+... ..+..+.|-..|+...++++||++++.+. +|. |-
T Consensus 129 Ei~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~-----------------------~~~-----~~---- 176 (284)
T TIGR02880 129 EAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDR-----------------------MDS-----FF---- 176 (284)
T ss_pred chhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH-----------------------HHH-----HH----
Confidence 99985432 12333455556666678999999987542 011 11
Q ss_pred cCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhh
Q 000823 773 RGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 812 (1267)
Q Consensus 773 ~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~ 812 (1267)
..+.+|.+||+.+|+|+.++.+++.+||+..+.+
T Consensus 177 ------~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 177 ------ESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred ------hhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 1467899999999999999999999999977665
No 302
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.0014 Score=75.49 Aligned_cols=154 Identities=13% Similarity=0.099 Sum_probs=91.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCceE----------------Eeeccccchh-ccCc--cHHHHHHHHHHHHhc
Q 000823 968 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI----------------NISMSSITSK-WFGE--GEKYVKAVFSLASKI 1028 (1267)
Q Consensus 968 kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi----------------~I~~seL~s~-~~Ge--~e~~v~~lF~~A~k~ 1028 (1267)
+-+..+||+|| +||+.+|+++|..+-+.-. .-+.+++.-- -.|. .-..|+.+...+...
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34578999996 6899999999988732110 0011222100 0111 134556655555433
Q ss_pred ----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCC
Q 000823 1029 ----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNL 1104 (1267)
Q Consensus 1029 ----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~ 1104 (1267)
...|++||++|.|. ....|.|+..++. ++.++++|.+|+.++.+-|.+++|+ ..|.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH------------VNAANSLLKVIEE----PQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred cccCCcEEEEeehhhhcC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhCchHHHHcc-eeeeCCC
Confidence 24699999999883 2344556555555 3456888999999999999999999 7788865
Q ss_pred CCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHHHHH
Q 000823 1105 PDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIF 1148 (1267)
Q Consensus 1105 Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~~Lv 1148 (1267)
+.++..+++. ..++..+ ...++....| +......+.
T Consensus 163 -~~~~~~~~L~----~~g~~~~--~a~~la~~~~-s~~~A~~l~ 198 (290)
T PRK07276 163 -NEAYLIQLLE----QKGLLKT--QAELLAKLAQ-STSEAEKLA 198 (290)
T ss_pred -cHHHHHHHHH----HcCCChH--HHHHHHHHCC-CHHHHHHHh
Confidence 4554444443 4444322 2333444445 455544343
No 303
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.00074 Score=76.21 Aligned_cols=121 Identities=7% Similarity=0.064 Sum_probs=78.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------eEEeeccccchhc-cC--ccHHHHHHHHHHHHh---
Q 000823 968 KPCKGILLFGPPGTGKTMLAKAVATEAGAN--------------FINISMSSITSKW-FG--EGEKYVKAVFSLASK--- 1027 (1267)
Q Consensus 968 kP~~gVLL~GPpGTGKT~LAkALA~elg~~--------------fi~I~~seL~s~~-~G--e~e~~v~~lF~~A~k--- 1027 (1267)
.++..+||+||.|+||..+|.++|..+-+. +..-..+++.--+ .+ -....++.+......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 456789999999999999999999887321 0111112221100 00 112334444433221
Q ss_pred --cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCC
Q 000823 1028 --IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLP 1105 (1267)
Q Consensus 1028 --~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~P 1105 (1267)
....|++|+++|.|- ....|.|+..++. ++.++++|.+|+.++.+-+.+++|+ ..+.|+.+
T Consensus 85 e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhC------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 235799999999883 3445666666655 3567899999999999999999998 55667665
No 304
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.00063 Score=78.60 Aligned_cols=125 Identities=10% Similarity=0.072 Sum_probs=84.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC-------------ceEEeeccccchhccCccHHHHHHHHHHHHh-----cCCe
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEAGA-------------NFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAPS 1031 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~elg~-------------~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k-----~~Ps 1031 (1267)
.+.+||+|+.|.||+.+|+++++.+-+ .++.++.. +..+ .-..++.+.+.... ....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCce
Confidence 357899999999999999999998722 12223210 1111 12234444443322 2457
Q ss_pred EEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHH
Q 000823 1032 VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRA 1111 (1267)
Q Consensus 1032 IIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~ 1111 (1267)
|++||++|.+. ....+.|+..++.. +..+++|.+|+.+..+-+.+++|+ .++.|..|+.++..
T Consensus 93 vvII~~~e~m~------------~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 93 ILIIKNIEKTS------------NSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred EEEEecccccC------------HHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHH
Confidence 99999999772 23344555555553 456777777778899999999999 78999999988887
Q ss_pred HHHHH
Q 000823 1112 KILQV 1116 (1267)
Q Consensus 1112 eIL~~ 1116 (1267)
+.|..
T Consensus 156 ~~l~~ 160 (299)
T PRK07132 156 AKLLS 160 (299)
T ss_pred HHHHH
Confidence 77654
No 305
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.58 E-value=0.00071 Score=70.86 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEA 994 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~el 994 (1267)
...++++|+||+|||+++..++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3579999999999999999999877
No 306
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.56 E-value=0.00051 Score=81.37 Aligned_cols=102 Identities=21% Similarity=0.373 Sum_probs=58.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC-ceEEeeccccchh-------ccCccHHHHHHHHHHHHhcCCeEEEEccc
Q 000823 967 TKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSITSK-------WFGEGEKYVKAVFSLASKIAPSVIFVDEV 1038 (1267)
Q Consensus 967 ~kP~~gVLL~GPpGTGKT~LAkALA~elg~-~fi~I~~seL~s~-------~~Ge~e~~v~~lF~~A~k~~PsIIfIDEI 1038 (1267)
..+++|++||||+|+|||+|.-.+...+.. .-.++.-.+++-. +.|... -+..+-....+ ...||+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~-~l~~va~~l~~-~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDD-PLPQVADELAK-ESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCc-cHHHHHHHHHh-cCCEEEEeee
Confidence 346799999999999999999999888743 2222222222111 111111 12222222222 2249999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC
Q 000823 1039 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1267)
Q Consensus 1039 D~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1267)
+.- ...+--.+.+++..++ ...+++|+|+|.+
T Consensus 137 ~V~-----DiaDAmil~rLf~~l~----------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 137 QVT-----DIADAMILKRLFEALF----------KRGVVLVATSNRP 168 (362)
T ss_pred ecc-----chhHHHHHHHHHHHHH----------HCCCEEEecCCCC
Confidence 833 2233334455555553 3568999999974
No 307
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=97.56 E-value=0.00011 Score=90.09 Aligned_cols=88 Identities=19% Similarity=0.261 Sum_probs=75.6
Q ss_pred eeC-CeeEEcCCCCcceeecCCCCccceEEEEEEe-------cCCceEEEEEEecC-CceEEcCeeecCCCeeEccCCCE
Q 000823 142 ICA-SIFTVGSSRQCNFPLKDQAISAVLCKIKHVQ-------SEGSAVAMVESIGS-KGLQVNGKNLKKNTSCELRSGDE 212 (1267)
Q Consensus 142 i~~-~~~tvGr~~~Cd~~l~~~~~s~~~c~i~~~~-------~~~~~~~~Led~s~-nGt~VNg~~~gk~~~~~L~~gDe 212 (1267)
+.+ ..|+|||-..||+.+-.++||+.||.|..-. ..++...||.|+++ -|||+|..++.+.+-+.++-|+.
T Consensus 173 l~~~~~~~fgr~~~cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~rvppk~yir~~Vg~v 252 (793)
T KOG1881|consen 173 LKGAAACLFGRLGGCDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKDRVPPKVYIRDRVGHV 252 (793)
T ss_pred cccceeEEecccCCCccccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccccCCCcchhhhhHHHH
Confidence 554 6799999999999999999999999988631 22344578999988 88999999999999999999999
Q ss_pred EEEeecCCeEEEEEechh
Q 000823 213 VVFGSLGNHAYIFQQLLN 230 (1267)
Q Consensus 213 I~f~~~~~~ayiF~~l~~ 230 (1267)
+-|+...+ +||||.-..
T Consensus 253 ~~fggsTr-l~i~Qgp~e 269 (793)
T KOG1881|consen 253 ARFGGSTR-LYIFQGPEE 269 (793)
T ss_pred HHhcCceE-EEEeeCCCc
Confidence 99998877 999996544
No 308
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.55 E-value=0.00032 Score=80.56 Aligned_cols=161 Identities=19% Similarity=0.325 Sum_probs=95.5
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH---HhCCceEEeecccc------
Q 000823 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT---EAGANFINISMSSI------ 1006 (1267)
Q Consensus 936 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~---elg~~fi~I~~seL------ 1006 (1267)
.+.|..+-.+.+.+++..... .....++++.||.|+|||+|...... +.|-+|+.+.....
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~----------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL----------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH----------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 346777777777776653211 12346899999999999997665433 45666655443211
Q ss_pred ---------------chhccCccHHHHHHHHHHHHhc-----CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhcc
Q 000823 1007 ---------------TSKWFGEGEKYVKAVFSLASKI-----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1066 (1267)
Q Consensus 1007 ---------------~s~~~Ge~e~~v~~lF~~A~k~-----~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ld 1066 (1267)
..+.+|.....+..+....++. .+.|.++||||.+++.. .++++..+-
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------rQtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------RQTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------hhHHHHHHH
Confidence 1123344444444444433322 13455678999776331 122333222
Q ss_pred CCcccCCCcEEEEEecCCCCC---CcHHHHhccccc-ccC-CCCCHHHHHHHHHHHH
Q 000823 1067 GLRTKDTERILVLAATNRPFD---LDEAVIRRLPRR-LMV-NLPDAPNRAKILQVIL 1118 (1267)
Q Consensus 1067 gl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd~v-I~~-~~Pd~eeR~eIL~~ll 1118 (1267)
.+......++.||+.|.+.+. |...+.+||.++ |.+ +.....+-..+++.++
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 222223678999999988754 456788899765 554 4456888888988887
No 309
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.44 E-value=0.00028 Score=69.17 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 000823 973 ILLFGPPGTGKTMLAKAVATEAG 995 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~elg 995 (1267)
|.|+||||+|||++|+.||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998874
No 310
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.42 E-value=0.00013 Score=80.62 Aligned_cols=110 Identities=19% Similarity=0.222 Sum_probs=56.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccc--cchh--------ccCccHHHHHHHHHHHH--hcCCeEEEEcc
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS--ITSK--------WFGEGEKYVKAVFSLAS--KIAPSVIFVDE 1037 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~se--L~s~--------~~Ge~e~~v~~lF~~A~--k~~PsIIfIDE 1037 (1267)
+..+||||+||+|||++|+.++. ..-++..+.+. +.+. ....+-..+...+..+. ...+.+|+||+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 35699999999999999999963 12233333321 0000 00111122222223332 23478999999
Q ss_pred chhhhc------CCCCC---chHHHHHHHHHhhhhhccCCcccCCCcEEEEEec
Q 000823 1038 VDSMLG------RRENP---GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT 1082 (1267)
Q Consensus 1038 ID~L~~------~r~~~---~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTT 1082 (1267)
|+.|.. .+... ........+.+.|+..+..+.. .+.+|++++-.
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~-~g~nII~tAhe 142 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE-SNKNIYATAWE 142 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh-CCCcEEEEEee
Confidence 998864 11111 0112222334445444444433 24567777654
No 311
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.40 E-value=0.0011 Score=79.22 Aligned_cols=173 Identities=22% Similarity=0.295 Sum_probs=95.5
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEe----eccccchhcc
Q 000823 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI----SMSSITSKWF 1011 (1267)
Q Consensus 936 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I----~~seL~s~~~ 1011 (1267)
.|.|.+++|+.+.-++..--+. .+-.+--.+.--+|||.|.|||.|+.|.+.+-+-.-.-++.- +++.|....+
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK--~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~ 409 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRK--RLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVI 409 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccc--cCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEE
Confidence 5789999999998887653321 111111122235699999999999999998876553333221 0111111000
Q ss_pred CccHH---HH-HHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHh--hhhhccCCcccCCCcEEEEEecCCC
Q 000823 1012 GEGEK---YV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE--FMVNWDGLRTKDTERILVLAATNRP 1085 (1267)
Q Consensus 1012 Ge~e~---~v-~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~e--LL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1267)
..+.. ++ ...+-+|. .+|+.|||+|.|- ..+.-+....+++ .-..-.|+.+.-+.+.-|+|++|..
T Consensus 410 RD~~tReFylEGGAMVLAD---gGVvCIDEFDKMr-----e~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpv 481 (729)
T KOG0481|consen 410 RDPSTREFYLEGGAMVLAD---GGVVCIDEFDKMR-----EDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPV 481 (729)
T ss_pred ecCCcceEEEecceEEEec---CCEEEeehhhccC-----chhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCc
Confidence 00000 00 00111222 3799999999882 2222222222222 2222356666667888999999974
Q ss_pred -----------C--CCcHHHHhcccccccCCCC-CHHHHHHHHHHHH
Q 000823 1086 -----------F--DLDEAVIRRLPRRLMVNLP-DAPNRAKILQVIL 1118 (1267)
Q Consensus 1086 -----------~--~Ld~aLlrRFd~vI~~~~P-d~eeR~eIL~~ll 1118 (1267)
+ ++.+.+++|||.++-+.-- +.+.-..|.++.+
T Consensus 482 fGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI 528 (729)
T KOG0481|consen 482 FGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVI 528 (729)
T ss_pred cccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhh
Confidence 1 3448999999998888543 3333344444444
No 312
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.39 E-value=0.00062 Score=82.78 Aligned_cols=166 Identities=26% Similarity=0.335 Sum_probs=93.4
Q ss_pred HHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 000823 914 NEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 993 (1267)
Q Consensus 914 ~e~e~~li~~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~e 993 (1267)
..+..++++.+.| .|.|++.+|..+.-.+.+-...-..- +-+ .+.--++||+|.|||||+.+.|.+++.
T Consensus 437 ~~i~~rIiaSiaP---------sIyGh~~VK~AvAlaLfGGv~kn~~~-khk-vRGDinvLL~GDPGTaKSQFLKY~eK~ 505 (854)
T KOG0477|consen 437 PPIKERIIASIAP---------SIYGHEDVKRAVALALFGGVPKNPGG-KHK-VRGDINVLLLGDPGTAKSQFLKYAEKT 505 (854)
T ss_pred ccHHHHHHHhhCc---------hhhchHHHHHHHHHHHhcCCccCCCC-Cce-eccceeEEEecCCCccHHHHHHHHHhc
Confidence 3455557777776 68899999999887776533221100 000 112246999999999999999999987
Q ss_pred hCCceEE---------eecccc----chhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHh
Q 000823 994 AGANFIN---------ISMSSI----TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE 1060 (1267)
Q Consensus 994 lg~~fi~---------I~~seL----~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~e 1060 (1267)
....++. +.+.-. ...|.=+. ..+-+|.+ +|-+|||+|.|-..... .-++++. ++
T Consensus 506 s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEa-----GALVLADk---GvClIDEFDKMndqDRt-SIHEAME---QQ 573 (854)
T KOG0477|consen 506 SPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEA-----GALVLADK---GVCLIDEFDKMNDQDRT-SIHEAME---QQ 573 (854)
T ss_pred CcceeEeccCCccccceeEEEeeCCccceeeecc-----CeEEEccC---ceEEeehhhhhcccccc-hHHHHHH---hc
Confidence 7444332 222111 11121111 12223333 79999999999433221 1222222 11
Q ss_pred hhhh-ccCCcccCCCcEEEEEecCCC-----------C--CCcHHHHhcccccccC
Q 000823 1061 FMVN-WDGLRTKDTERILVLAATNRP-----------F--DLDEAVIRRLPRRLMV 1102 (1267)
Q Consensus 1061 LL~~-ldgl~~~~~~~VlVIaTTN~p-----------~--~Ld~aLlrRFd~vI~~ 1102 (1267)
-+.. -.|+...-..+..||||+|.. + .|.+.+++|||....+
T Consensus 574 SISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVv 629 (854)
T KOG0477|consen 574 SISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVV 629 (854)
T ss_pred chhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeee
Confidence 1111 112222224577899999972 1 5668899999865444
No 313
>PHA00729 NTP-binding motif containing protein
Probab=97.37 E-value=0.00031 Score=77.85 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=24.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGAN 997 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~ 997 (1267)
.+++|+|+||||||+||.+||+.++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 479999999999999999999987633
No 314
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.32 E-value=0.0043 Score=72.45 Aligned_cols=59 Identities=27% Similarity=0.322 Sum_probs=39.9
Q ss_pred cccccccccchhHHHHHHHHHhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEE
Q 000823 426 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 498 (1267)
Q Consensus 426 sfd~FPYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~ 498 (1267)
+|++|-.- ++.+..|....-..... ....+.+||+||+| ..+..||+++|+++++++..
T Consensus 23 ~~~~~vG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG--~GKT~la~~ia~~l~~~~~~ 81 (328)
T PRK00080 23 SLDEFIGQ--EKVKENLKIFIEAAKKR----------GEALDHVLLYGPPG--LGKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CHHHhcCc--HHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCC--ccHHHHHHHHHHHhCCCeEE
Confidence 47775443 66666665444322211 12345799999999 99999999999999876543
No 315
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.30 E-value=0.00053 Score=84.41 Aligned_cols=175 Identities=26% Similarity=0.355 Sum_probs=105.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCceEEeeccccc-----hhccCccHHHHHH--------HHHHHHhcCCeEEEE
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSIT-----SKWFGEGEKYVKA--------VFSLASKIAPSVIFV 1035 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el--g~~fi~I~~seL~-----s~~~Ge~e~~v~~--------lF~~A~k~~PsIIfI 1035 (1267)
..+|+.|.|||||-.+|++|-+.. ..+|+.++|..+- +.++|..+..... .++.|. -..+|+
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~---gGtlFl 413 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD---GGTLFL 413 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC---CCccHH
Confidence 469999999999999999997655 6789999997652 2344433322221 222222 369999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHH
Q 000823 1036 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAP 1108 (1267)
Q Consensus 1036 DEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~~~~Pd~e 1108 (1267)
|||..| .-..+..+-+++++-...--|... ....|-||++|++. ..+.+.+--|+ ..+.+.+|...
T Consensus 414 deIgd~-----p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~lr 486 (606)
T COG3284 414 DEIGDM-----PLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPLR 486 (606)
T ss_pred HHhhhc-----hHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeeccCchh
Confidence 999977 334455555666554443333333 46789999999874 23444555566 45666777776
Q ss_pred HHH---HHHHHHHhhCCC-CCcccHHHHHHHc----CCCCHHHHHHHHhhhhhHHH
Q 000823 1109 NRA---KILQVILAKEDL-SPDVDFDAIANMT----DGYSGSDLKVIFLSHSLICN 1156 (1267)
Q Consensus 1109 eR~---eIL~~ll~k~~l-~~dvdl~~LA~~T----eGySg~DL~~Lv~~a~l~~~ 1156 (1267)
+|. ..|..++.++.- ...++-+.++.+. .| +-++|..++..+...+.
T Consensus 487 ~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~~ 541 (606)
T COG3284 487 ERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALSD 541 (606)
T ss_pred cccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcCC
Confidence 664 455555554432 2334444444443 34 44666655554444443
No 316
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.28 E-value=0.0014 Score=69.44 Aligned_cols=71 Identities=23% Similarity=0.340 Sum_probs=46.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchh------ccCcc-----------------------H-----
Q 000823 973 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGEG-----------------------E----- 1015 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~------~~Ge~-----------------------e----- 1015 (1267)
+|++||||+|||+++..++.+. |.+++.++..+-... .+|.. +
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7999999999999999887655 667777665321100 00100 0
Q ss_pred HHHHHHHHHHHhcCCeEEEEccchhhhc
Q 000823 1016 KYVKAVFSLASKIAPSVIFVDEVDSMLG 1043 (1267)
Q Consensus 1016 ~~v~~lF~~A~k~~PsIIfIDEID~L~~ 1043 (1267)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1124445555667899999999998764
No 317
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.26 E-value=0.00095 Score=72.42 Aligned_cols=75 Identities=21% Similarity=0.404 Sum_probs=50.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhcc----C-------------------ccHHHHHHHH
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF----G-------------------EGEKYVKAVF 1022 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~~----G-------------------e~e~~v~~lF 1022 (1267)
+..-++|+||||+|||+++..++... +..+++++..++....+ . +....+..+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 90 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTS 90 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHH
Confidence 33568999999999999999988654 66788888764210000 0 0011234444
Q ss_pred HHHHhcCCeEEEEccchhhhc
Q 000823 1023 SLASKIAPSVIFVDEVDSMLG 1043 (1267)
Q Consensus 1023 ~~A~k~~PsIIfIDEID~L~~ 1043 (1267)
..+....+.+|+||-|..++.
T Consensus 91 ~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 91 KFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHhhcCccEEEEeCcHHHhH
Confidence 445555789999999998863
No 318
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.20 E-value=0.0094 Score=72.41 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeecc
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1004 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~s 1004 (1267)
++..++|+|++|+|||+++..+|..+ +..+..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 45789999999999999999999877 5666666553
No 319
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.19 E-value=0.001 Score=86.98 Aligned_cols=136 Identities=24% Similarity=0.330 Sum_probs=90.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch--hccCcc-----HH---HHHHHHHHHHhcCCeEEEEccchh
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFGEG-----EK---YVKAVFSLASKIAPSVIFVDEVDS 1040 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s--~~~Ge~-----e~---~v~~lF~~A~k~~PsIIfIDEID~ 1040 (1267)
+++||.|.||+|||+|..|+|+..|-.+++|+.++-.. ..+|.. .+ ....-|-.|.+.. .-|++||+..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehhhh
Confidence 46999999999999999999999999999999876311 122221 01 1122344444433 5788999973
Q ss_pred hhcCCCCCchHHHHHHHHHhhhhhccC---Cc-------ccCCCcEEEEEecCCC------CCCcHHHHhcccccccCCC
Q 000823 1041 MLGRRENPGEHEAMRKMKNEFMVNWDG---LR-------TKDTERILVLAATNRP------FDLDEAVIRRLPRRLMVNL 1104 (1267)
Q Consensus 1041 L~~~r~~~~~~~~~~~il~eLL~~ldg---l~-------~~~~~~VlVIaTTN~p------~~Ld~aLlrRFd~vI~~~~ 1104 (1267)
. ...++..|-..+|. .. -.-..++.|.||-|+. ..|+..+++|| .++.+..
T Consensus 1623 a------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~ 1689 (4600)
T COG5271 1623 A------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDG 1689 (4600)
T ss_pred h------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEecc
Confidence 3 13333333333321 11 1113578888888864 47999999999 7888888
Q ss_pred CCHHHHHHHHHHHHhh
Q 000823 1105 PDAPNRAKILQVILAK 1120 (1267)
Q Consensus 1105 Pd~eeR~eIL~~ll~k 1120 (1267)
.+.++...|...+...
T Consensus 1690 lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1690 LTTDDITHIANKMYPQ 1705 (4600)
T ss_pred cccchHHHHHHhhCCc
Confidence 8888888888777643
No 320
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.18 E-value=0.00044 Score=77.60 Aligned_cols=131 Identities=24% Similarity=0.383 Sum_probs=74.2
Q ss_pred eEEEEcCCCChHHHHHHHHH------HHhCCceEEeeccccchh-----ccCccHHHHHHHHHHH--------HhcCCeE
Q 000823 972 GILLFGPPGTGKTMLAKAVA------TEAGANFINISMSSITSK-----WFGEGEKYVKAVFSLA--------SKIAPSV 1032 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA------~elg~~fi~I~~seL~s~-----~~Ge~e~~v~~lF~~A--------~k~~PsI 1032 (1267)
.+||.||+|.||+.||+.|- +++..+|++++|..+.+. .+|. ++..|.-| +......
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfgh----vkgaftga~~~r~gllrsadggm 285 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGH----VKGAFTGARESREGLLRSADGGM 285 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhh----hccccccchhhhhhhhccCCCce
Confidence 59999999999999999884 355889999999987543 2222 22223222 2223579
Q ss_pred EEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC-------CCCCcHHHHhcccccccCCCC
Q 000823 1033 IFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-------PFDLDEAVIRRLPRRLMVNLP 1105 (1267)
Q Consensus 1033 IfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~-------p~~Ld~aLlrRFd~vI~~~~P 1105 (1267)
+|+|||..|. ..++..+-+.+.+--..--|-...-...+-+|+-|-+ ...+.+.+.-|+ ....|.+|
T Consensus 286 lfldeigelg-----adeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwtf~lp 359 (531)
T COG4650 286 LFLDEIGELG-----ADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWTFTLP 359 (531)
T ss_pred EehHhhhhcC-----ccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heeeeecc
Confidence 9999999884 2233333333333211111111111233444554432 123344444565 45677788
Q ss_pred CHHHHHH
Q 000823 1106 DAPNRAK 1112 (1267)
Q Consensus 1106 d~eeR~e 1112 (1267)
...+|.+
T Consensus 360 gl~qr~e 366 (531)
T COG4650 360 GLRQRQE 366 (531)
T ss_pred ccccCcc
Confidence 7777654
No 321
>PHA02624 large T antigen; Provisional
Probab=97.17 E-value=0.00042 Score=85.46 Aligned_cols=120 Identities=19% Similarity=0.261 Sum_probs=67.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCC--C-
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE--N- 1047 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~--~- 1047 (1267)
+.+||+||||||||+++++|++.++..++.++++.-.+. |.+---..-.+.+||++-.-..... .
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCCc
Confidence 579999999999999999999999777888886542221 1111111124778888742211000 0
Q ss_pred -Cch--HHHHHHHHHhh-hhhccCCcccCCCcE---EEEEecCCCCCCcHHHHhcccccccCCC
Q 000823 1048 -PGE--HEAMRKMKNEF-MVNWDGLRTKDTERI---LVLAATNRPFDLDEAVIRRLPRRLMVNL 1104 (1267)
Q Consensus 1048 -~~~--~~~~~~il~eL-L~~ldgl~~~~~~~V---lVIaTTN~p~~Ld~aLlrRFd~vI~~~~ 1104 (1267)
... -..++..+..- .+.+|.-... ...+ -+|.|||. ..|+..+.-||..++.|..
T Consensus 500 G~~~dNl~~lRn~LDG~V~v~ld~KH~n-~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 500 GQGMNNLDNLRDYLDGSVPVNLEKKHLN-KRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred ccccchhhHHHhhcCCCCccccchhccC-chhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 000 12223332222 2222221111 1111 24566774 6688889999988888853
No 322
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.17 E-value=0.0019 Score=78.30 Aligned_cols=172 Identities=24% Similarity=0.319 Sum_probs=107.3
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce---------EEeecccc
Q 000823 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---------INISMSSI 1006 (1267)
Q Consensus 936 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~f---------i~I~~seL 1006 (1267)
.|.|.+.+|+.+.-++.+-... .+.++...+.--+||+.|.|-+.|+.|.|++.+.....+ +-+.++--
T Consensus 302 SI~GH~~vKkAillLLlGGvEk--~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEK--NLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhcccee--ccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 5789999999988777654321 122222233345699999999999999999987663221 22222211
Q ss_pred chhccCccHHHHHH-HHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhc--cCCcccCCCcEEEEEecC
Q 000823 1007 TSKWFGEGEKYVKA-VFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATN 1083 (1267)
Q Consensus 1007 ~s~~~Ge~e~~v~~-lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~l--dgl~~~~~~~VlVIaTTN 1083 (1267)
..+-.| |..+.. .+-+|.+ +|++|||+|.| +.....+...++.+--+.+ .|+...-+.+.-|||++|
T Consensus 380 tD~eTG--ERRLEAGAMVLADR---GVVCIDEFDKM-----sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 380 TDQETG--ERRLEAGAMVLADR---GVVCIDEFDKM-----SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred eccccc--hhhhhcCceEEccC---ceEEehhcccc-----cchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 122122 222211 2333444 89999999998 3444555556665544433 466666678999999999
Q ss_pred CCC-------------CCcHHHHhcccccccC-CCCCHHHHHHHHHHHHh
Q 000823 1084 RPF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILA 1119 (1267)
Q Consensus 1084 ~p~-------------~Ld~aLlrRFd~vI~~-~~Pd~eeR~eIL~~ll~ 1119 (1267)
..+ .|++.+++|||..+.+ +.-+...-+.|-.+.++
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLR 499 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLR 499 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHH
Confidence 742 4778999999976554 55555555555555553
No 323
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=97.15 E-value=0.00088 Score=73.17 Aligned_cols=104 Identities=23% Similarity=0.271 Sum_probs=80.2
Q ss_pred cCCCccCCCcchh--hcccCCCCc--ceeeeC-CeeEEcCCC-CcceeecCCCCccceEEEE-E-E--ecCC-----ceE
Q 000823 117 QNPTFETSTPWCR--LLSQSGQNS--NVPICA-SIFTVGSSR-QCNFPLKDQAISAVLCKIK-H-V--QSEG-----SAV 181 (1267)
Q Consensus 117 ~~~~~~~~~pWgr--L~s~~~~~~--~l~i~~-~~~tvGr~~-~Cd~~l~~~~~s~~~c~i~-~-~--~~~~-----~~~ 181 (1267)
.+-.++++.||.| ||+-....+ .+.|.. +.|.+||.. --||-++.++-|+-||-|. + + ++.+ .+-
T Consensus 161 y~eppearkP~kRwrLy~fk~~e~l~~l~iHrqs~yL~gRerkIaDi~idhpScSKQHaviQyR~v~~~r~dGt~grrvk 240 (293)
T KOG1882|consen 161 YNEPPEARKPKKRWRLYPFKCYEVLPVLYIHRQSCYLDGRERKIADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRVK 240 (293)
T ss_pred ecCCchhcCchhheecccccCCcccchheeeeeeeeecCceeeeeccCCCCccccccceeeeeeecccccCCCccceeee
Confidence 5678888999875 777654443 455544 889999955 4577777888899999886 3 2 2222 447
Q ss_pred EEEEEecC-CceEEcCeeecCCCeeEccCCCEEEEeecCC
Q 000823 182 AMVESIGS-KGLQVNGKNLKKNTSCELRSGDEVVFGSLGN 220 (1267)
Q Consensus 182 ~~Led~s~-nGt~VNg~~~gk~~~~~L~~gDeI~f~~~~~ 220 (1267)
.||-|+++ ||||+|.++|.--.-..|..+|.|-|+.+..
T Consensus 241 pYiiDLgS~NgTfLNnk~IepqRYyEL~ekDvlkfgfs~r 280 (293)
T KOG1882|consen 241 PYIIDLGSGNGTFLNNKVIEPQRYYELREKDVLKFGFSSR 280 (293)
T ss_pred eEEEecCCCCcceecCcccCchheeeeecCceeeeccchH
Confidence 89999987 9999999999999999999999999985543
No 324
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.15 E-value=0.0074 Score=72.56 Aligned_cols=78 Identities=23% Similarity=0.266 Sum_probs=52.5
Q ss_pred eEEEEcchhhhhcC---CcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 000823 693 FILFMKDAEKSIAG---NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 769 (1267)
Q Consensus 693 ~ILfi~di~~~l~g---~~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r 769 (1267)
-+|+|||++.+.+. +.++++.|....+. +..+||+++..+.. ++
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~--~~~iiits~~~p~~----------------------l~--------- 247 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHEN--GKQIVLTSDRPPKE----------------------LP--------- 247 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--CCCEEEecCCCHHH----------------------Hh---------
Confidence 48999999975442 24466666665543 56677777654431 11
Q ss_pred ccccCCCchhHHHHHhhcCC--CeEEEcCCCHHHHHHHHHHhhhh
Q 000823 770 LHDRGKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLDR 812 (1267)
Q Consensus 770 ~~~~~~~~~~~d~~L~rrF~--~~IeI~LPdeE~Rl~IwK~qLe~ 812 (1267)
.+++.|..||. ..++|++|+.+.|..|++.....
T Consensus 248 ---------~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 248 ---------GLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred ---------hhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 13455666675 37999999999999999976544
No 325
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.13 E-value=0.00041 Score=68.33 Aligned_cols=31 Identities=42% Similarity=0.739 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceEEeec
Q 000823 973 ILLFGPPGTGKTMLAKAVATEAGANFINISM 1003 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~elg~~fi~I~~ 1003 (1267)
|+|.||||+|||++|+.||+.++++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988876664
No 326
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.12 E-value=0.005 Score=83.36 Aligned_cols=171 Identities=16% Similarity=0.269 Sum_probs=93.1
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce---EEeeccccc--
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---INISMSSIT-- 1007 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~f---i~I~~seL~-- 1007 (1267)
.+++++|++...++|..++... ....+-+-|+|++|+|||+||+++++.+...| +.++...+.
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~------------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE------------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc------------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 4567899999999888877531 12235688999999999999999988874332 112110000
Q ss_pred hhccCc------------cHHHHHH-------------HHHHHHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000823 1008 SKWFGE------------GEKYVKA-------------VFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1062 (1267)
Q Consensus 1008 s~~~Ge------------~e~~v~~-------------lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL 1062 (1267)
....+. ....+.. .....-+..+.+|+|||++.. ..++.+.
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--------------~~l~~L~ 315 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--------------DVLDALA 315 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------HHHHHHH
Confidence 000000 0000111 111112335679999998732 1122222
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCcccH----HHHHHHc
Q 000823 1063 VNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDF----DAIANMT 1136 (1267)
Q Consensus 1063 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl----~~LA~~T 1136 (1267)
...+.. ...-.||.||.. ..+++ ..+.++.++.|+.++..++|..+.-+.... ..++ .++++.+
T Consensus 316 ~~~~~~----~~GsrIIiTTrd-----~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~~c 385 (1153)
T PLN03210 316 GQTQWF----GSGSRIIVITKD-----KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVALRA 385 (1153)
T ss_pred hhCccC----CCCcEEEEEeCc-----HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHh
Confidence 211111 111234556664 33333 356788999999999999998876543322 2223 3455666
Q ss_pred CCC
Q 000823 1137 DGY 1139 (1267)
Q Consensus 1137 eGy 1139 (1267)
.|.
T Consensus 386 ~GL 388 (1153)
T PLN03210 386 GNL 388 (1153)
T ss_pred CCC
Confidence 663
No 327
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.10 E-value=0.0046 Score=71.02 Aligned_cols=52 Identities=27% Similarity=0.295 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEE
Q 000823 436 ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 499 (1267)
Q Consensus 436 e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~~ 499 (1267)
++.+..|..+.-..... ....+-+||+||+| ..+.+||+++|++++.++..+
T Consensus 10 ~~~~~~l~~~l~~~~~~----------~~~~~~~ll~Gp~G--~GKT~la~~ia~~~~~~~~~~ 61 (305)
T TIGR00635 10 EKVKEQLQLFIEAAKMR----------QEALDHLLLYGPPG--LGKTTLAHIIANEMGVNLKIT 61 (305)
T ss_pred HHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCC--CCHHHHHHHHHHHhCCCEEEe
Confidence 66666666655322222 12335699999999 999999999999988765544
No 328
>PF14516 AAA_35: AAA-like domain
Probab=97.08 E-value=0.0032 Score=73.81 Aligned_cols=162 Identities=14% Similarity=0.158 Sum_probs=84.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhccCc-------------------------------c
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-------------------------------G 1014 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~~Ge-------------------------------~ 1014 (1267)
|..-+.|+||..+|||+|...+.+.+ |...+.+++..+-...+.. .
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 44579999999999999999887666 7888888876542211110 0
Q ss_pred HHHHHHHHHH---HHhcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCC-cccCCCcEEEEEecCCCCCCcH
Q 000823 1015 EKYVKAVFSL---ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDTERILVLAATNRPFDLDE 1090 (1267)
Q Consensus 1015 e~~v~~lF~~---A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl-~~~~~~~VlVIaTTN~p~~Ld~ 1090 (1267)
.......|+. .....|-||+|||||.++... .....++..+-.....- ......++.+|.+......+..
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~ 183 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIIL 183 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc------chHHHHHHHHHHHHHhcccCcccceEEEEEecCccccccc
Confidence 0111222332 122357899999999997431 11112222111111100 0011123333333322211211
Q ss_pred HH-Hhcc--cccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCC
Q 000823 1091 AV-IRRL--PRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGY 1139 (1267)
Q Consensus 1091 aL-lrRF--d~vI~~~~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGy 1139 (1267)
.. .+-| ...|.++.-+.++...+++.+-.. .. ...++.|-..|.|+
T Consensus 184 ~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~-~~~~~~l~~~tgGh 232 (331)
T PF14516_consen 184 DINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FS-QEQLEQLMDWTGGH 232 (331)
T ss_pred CCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CC-HHHHHHHHHHHCCC
Confidence 11 1123 345666777888888877766322 22 22378888888884
No 329
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.01 E-value=0.003 Score=75.18 Aligned_cols=97 Identities=23% Similarity=0.411 Sum_probs=61.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchh------ccCc--------cHHHHHHHHHHHHhcCCe
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE--------GEKYVKAVFSLASKIAPS 1031 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~------~~Ge--------~e~~v~~lF~~A~k~~Ps 1031 (1267)
+..-+||+|+||+|||+|+..+|..+ +.++++++..+-... .+|. .+..+..++..+....|.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~ 160 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPD 160 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCc
Confidence 44568999999999999999998765 467778776432111 1111 122345666777778899
Q ss_pred EEEEccchhhhcCCC--CCchHHHHHHHHHhhhhhc
Q 000823 1032 VIFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVNW 1065 (1267)
Q Consensus 1032 IIfIDEID~L~~~r~--~~~~~~~~~~il~eLL~~l 1065 (1267)
+|+||+|..+..... .++.....+.++..|....
T Consensus 161 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~la 196 (372)
T cd01121 161 LVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFA 196 (372)
T ss_pred EEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHH
Confidence 999999998864321 1222333445555554443
No 330
>PRK08118 topology modulation protein; Reviewed
Probab=96.98 E-value=0.0016 Score=69.04 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeec
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1003 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~ 1003 (1267)
..|+++||||+|||+||+.|++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 369999999999999999999999999998875
No 331
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.97 E-value=0.0043 Score=75.64 Aligned_cols=96 Identities=25% Similarity=0.432 Sum_probs=62.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchhc------cCc--------cHHHHHHHHHHHHhcCCe
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FGE--------GEKYVKAVFSLASKIAPS 1031 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~~------~Ge--------~e~~v~~lF~~A~k~~Ps 1031 (1267)
+..-+||+|+||+|||+|+..+|... +.++++++..+-.... +|. .+..+..++..+.+..|.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~ 158 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPD 158 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCC
Confidence 44568999999999999999998765 6788888875432211 111 122345666777777899
Q ss_pred EEEEccchhhhcCCCC--CchHHHHHHHHHhhhhh
Q 000823 1032 VIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVN 1064 (1267)
Q Consensus 1032 IIfIDEID~L~~~r~~--~~~~~~~~~il~eLL~~ 1064 (1267)
+|+||+|..+...... .+.....+.++..|...
T Consensus 159 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ 193 (446)
T PRK11823 159 LVVIDSIQTMYSPELESAPGSVSQVRECAAELMRL 193 (446)
T ss_pred EEEEechhhhccccccCCCCCHHHHHHHHHHHHHH
Confidence 9999999988643211 22233344445544443
No 332
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.95 E-value=0.00025 Score=75.31 Aligned_cols=27 Identities=48% Similarity=0.746 Sum_probs=22.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCce
Q 000823 972 GILLFGPPGTGKTMLAKAVATEA---GANF 998 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~el---g~~f 998 (1267)
+++|+|+||+|||||++.++..+ +.++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 58999999999999999999888 5553
No 333
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.94 E-value=0.01 Score=72.82 Aligned_cols=73 Identities=11% Similarity=0.203 Sum_probs=55.7
Q ss_pred CCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 000823 691 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 770 (1267)
Q Consensus 691 ~p~ILfi~di~~~l~g~~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~ 770 (1267)
..-||||||+|.+- .+..+.|...|+..++.+++|++++.++
T Consensus 117 ~~kVvIIDE~h~Lt---~~a~~~LLk~LE~p~~~vv~Ilattn~~----------------------------------- 158 (472)
T PRK14962 117 KYKVYIIDEVHMLT---KEAFNALLKTLEEPPSHVVFVLATTNLE----------------------------------- 158 (472)
T ss_pred CeEEEEEEChHHhH---HHHHHHHHHHHHhCCCcEEEEEEeCChH-----------------------------------
Confidence 34599999999853 3345667788888889999999988543
Q ss_pred cccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhh
Q 000823 771 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 810 (1267)
Q Consensus 771 ~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qL 810 (1267)
++..+|..|+ ..+++..|+.++...+++...
T Consensus 159 --------kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 159 --------KVPPTIISRC-QVIEFRNISDELIIKRLQEVA 189 (472)
T ss_pred --------hhhHHHhcCc-EEEEECCccHHHHHHHHHHHH
Confidence 1456677888 789999999998777777544
No 334
>PRK07261 topology modulation protein; Provisional
Probab=96.93 E-value=0.0021 Score=68.28 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=30.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEeeccc
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1005 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~se 1005 (1267)
.|+|+|+||+|||+||+.|+..++.+++.++.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 5899999999999999999999999988877543
No 335
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.92 E-value=0.0037 Score=82.16 Aligned_cols=140 Identities=19% Similarity=0.230 Sum_probs=88.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeecccc------chhccCccHHH---HHHHHHHHHhcCCeEEEEccchhh
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------TSKWFGEGEKY---VKAVFSLASKIAPSVIFVDEVDSM 1041 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL------~s~~~Ge~e~~---v~~lF~~A~k~~PsIIfIDEID~L 1041 (1267)
..+||.||+-+|||++...+|++.|..|++|+-.+. ++.|+....+. -..++-.|-+.. --|++||+...
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC
Confidence 359999999999999999999999999999986543 33332222111 122444454444 36789999733
Q ss_pred hcCCCCCchHHHHHHHHHhhhhhc----cCCcccCCCcEEEEEecCCCC------CCcHHHHhcccccccCCCCCHHHHH
Q 000823 1042 LGRRENPGEHEAMRKMKNEFMVNW----DGLRTKDTERILVLAATNRPF------DLDEAVIRRLPRRLMVNLPDAPNRA 1111 (1267)
Q Consensus 1042 ~~~r~~~~~~~~~~~il~eLL~~l----dgl~~~~~~~VlVIaTTN~p~------~Ld~aLlrRFd~vI~~~~Pd~eeR~ 1111 (1267)
+ ...-+++++++..--.++ +.+ ..+..++++.||-|+|. .|..++++|| ..++|.--..++..
T Consensus 968 -p----TDVLEaLNRLLDDNRelfIPETqev-V~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddipedEle 1040 (4600)
T COG5271 968 -P----TDVLEALNRLLDDNRELFIPETQEV-VVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDELE 1040 (4600)
T ss_pred -c----HHHHHHHHHhhccccceecCCccee-eccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCcHHHHH
Confidence 1 112233333322110000 000 01235678888889874 5778999999 78888877788888
Q ss_pred HHHHHHH
Q 000823 1112 KILQVIL 1118 (1267)
Q Consensus 1112 eIL~~ll 1118 (1267)
.||+..+
T Consensus 1041 ~ILh~rc 1047 (4600)
T COG5271 1041 EILHGRC 1047 (4600)
T ss_pred HHHhccC
Confidence 8887654
No 336
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.91 E-value=0.024 Score=63.73 Aligned_cols=163 Identities=18% Similarity=0.213 Sum_probs=91.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CceEEeecccc---------chhccCccH--------HHHHHHHHHHHhc-C
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSI---------TSKWFGEGE--------KYVKAVFSLASKI-A 1029 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg---~~fi~I~~seL---------~s~~~Ge~e--------~~v~~lF~~A~k~-~ 1029 (1267)
+-+.++|+-|+|||++.|+++..++ ...+.++...+ +......+. ..-+.+.....+. .
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r 131 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKR 131 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCC
Confidence 3588999999999999997776662 22334444322 111112111 1223344444444 4
Q ss_pred CeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCc----HHHHhcccccccCCCC
Q 000823 1030 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD----EAVIRRLPRRLMVNLP 1105 (1267)
Q Consensus 1030 PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld----~aLlrRFd~vI~~~~P 1105 (1267)
|-++++||.+.+.. ..-++++.+.+-- .++. ..-.+++|+-..--..+- .++..|++.+|++++.
T Consensus 132 ~v~l~vdEah~L~~-----~~le~Lrll~nl~---~~~~---~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~ 200 (269)
T COG3267 132 PVVLMVDEAHDLND-----SALEALRLLTNLE---EDSS---KLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPL 200 (269)
T ss_pred CeEEeehhHhhhCh-----hHHHHHHHHHhhc---cccc---CceeeeecCCcccchhhchHHHHhhhheEEEEEecCCc
Confidence 58999999998842 2233333322211 1111 112355555332111111 2344488777899999
Q ss_pred CHHHHHHHHHHHHhhCCCC----CcccHHHHHHHcCCCCHHHHH
Q 000823 1106 DAPNRAKILQVILAKEDLS----PDVDFDAIANMTDGYSGSDLK 1145 (1267)
Q Consensus 1106 d~eeR~eIL~~ll~k~~l~----~dvdl~~LA~~TeGySg~DL~ 1145 (1267)
+.++-..+++..++.-+.. .+.-+..++..+.| .++-|.
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin 243 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLIN 243 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHH
Confidence 9999999999999875433 33446667777777 344444
No 337
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0055 Score=79.02 Aligned_cols=139 Identities=23% Similarity=0.338 Sum_probs=98.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCceEEeeccccc--hhccCccHHHHHHHHHHHHhc-CCeEEEEcc
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVIFVDE 1037 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el----------g~~fi~I~~seL~--s~~~Ge~e~~v~~lF~~A~k~-~PsIIfIDE 1037 (1267)
++-+|.|.||+|||.++.-+|+.. +..++.++...+. .++-|+.+..++.+..++... ...||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 577999999999999999999876 3456777776553 346678889999999988843 567899999
Q ss_pred chhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC-----CCCCcHHHHhcccccccCCCCCHHHHHH
Q 000823 1038 VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-----PFDLDEAVIRRLPRRLMVNLPDAPNRAK 1112 (1267)
Q Consensus 1038 ID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~-----p~~Ld~aLlrRFd~vI~~~~Pd~eeR~e 1112 (1267)
++.+.+...+.+ .....+.|.-.+. .+.+.+|+||.. ...-+|++-+|| ..+.++.|+.++...
T Consensus 289 lh~lvg~g~~~~----~~d~~nlLkp~L~------rg~l~~IGatT~e~Y~k~iekdPalErrw-~l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 289 LHWLVGSGSNYG----AIDAANLLKPLLA------RGGLWCIGATTLETYRKCIEKDPALERRW-QLVLVPIPSVENLSL 357 (898)
T ss_pred eeeeecCCCcch----HHHHHHhhHHHHh------cCCeEEEecccHHHHHHHHhhCcchhhCc-ceeEeccCcccchhh
Confidence 999886654422 1222222221111 233888887763 235678999999 567789999888777
Q ss_pred HHHHHHhh
Q 000823 1113 ILQVILAK 1120 (1267)
Q Consensus 1113 IL~~ll~k 1120 (1267)
||+.+-..
T Consensus 358 iL~~l~~~ 365 (898)
T KOG1051|consen 358 ILPGLSER 365 (898)
T ss_pred hhhhhhhh
Confidence 88777655
No 338
>PRK14974 cell division protein FtsY; Provisional
Probab=96.88 E-value=0.015 Score=68.41 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=44.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccc----------hhccC----------ccHHHHHHHHHHHH
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------SKWFG----------EGEKYVKAVFSLAS 1026 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~----------s~~~G----------e~e~~v~~lF~~A~ 1026 (1267)
+.-++|.||+|+|||+++..+|..+ +..+..+++..+. ....| .+...+....+.++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~ 219 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK 219 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999888776 5555555443210 00111 11122334444445
Q ss_pred hcCCeEEEEccchhh
Q 000823 1027 KIAPSVIFVDEVDSM 1041 (1267)
Q Consensus 1027 k~~PsIIfIDEID~L 1041 (1267)
.....+|+||....+
T Consensus 220 ~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 220 ARGIDVVLIDTAGRM 234 (336)
T ss_pred hCCCCEEEEECCCcc
Confidence 555679999998755
No 339
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.86 E-value=0.015 Score=67.30 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=55.8
Q ss_pred CeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccccc
Q 000823 692 PFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLH 771 (1267)
Q Consensus 692 p~ILfi~di~~~l~g~~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~ 771 (1267)
+-||+|||+|.+ +..+..+.|...|+..++++.+|.+++..+
T Consensus 101 ~~vliiDe~d~l--~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~------------------------------------ 142 (316)
T PHA02544 101 GKVIIIDEFDRL--GLADAQRHLRSFMEAYSKNCSFIITANNKN------------------------------------ 142 (316)
T ss_pred CeEEEEECcccc--cCHHHHHHHHHHHHhcCCCceEEEEcCChh------------------------------------
Confidence 458999999974 223355667777888778888888776442
Q ss_pred ccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHHhhhh
Q 000823 772 DRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 812 (1267)
Q Consensus 772 ~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~qLe~ 812 (1267)
++.++|..|| ..+.++.|+.+.+..+++..+.+
T Consensus 143 -------~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 143 -------GIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVR 175 (316)
T ss_pred -------hchHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 1466788889 68999999999999988865544
No 340
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.83 E-value=0.0082 Score=73.26 Aligned_cols=78 Identities=23% Similarity=0.290 Sum_probs=54.4
Q ss_pred CeEEEEcchhhhhcC---CcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccc
Q 000823 692 PFILFMKDAEKSIAG---NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFG 768 (1267)
Q Consensus 692 p~ILfi~di~~~l~g---~~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~ 768 (1267)
+-+|+||||+.+.+. +.++++.|....+. |..+||+++..+.. +
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~--~~~iiits~~~p~~------------------------------l- 258 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEA--GKQIVLTSDRPPKE------------------------------L- 258 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--CCcEEEECCCCHHH------------------------------H-
Confidence 458999999985442 34667766666544 56678887664431 1
Q ss_pred cccccCCCchhHHHHHhhcCC--CeEEEcCCCHHHHHHHHHHhhh
Q 000823 769 RLHDRGKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLD 811 (1267)
Q Consensus 769 r~~~~~~~~~~~d~~L~rrF~--~~IeI~LPdeE~Rl~IwK~qLe 811 (1267)
..++.+|.-||. ..++|+.|+.+.|..|++....
T Consensus 259 ---------~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~ 294 (450)
T PRK00149 259 ---------PGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAE 294 (450)
T ss_pred ---------HHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHH
Confidence 114566777785 4799999999999999996654
No 341
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.81 E-value=0.0042 Score=70.65 Aligned_cols=93 Identities=19% Similarity=0.297 Sum_probs=60.9
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CceEEee-ccccc
Q 000823 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSIT 1007 (1267)
Q Consensus 932 vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg---~~fi~I~-~seL~ 1007 (1267)
.++++++-.+...+.|++++.. +.+.++|.||+|+|||++++++...+. ..++.+. ..++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4677877777777777666542 224699999999999999999987763 3344442 22221
Q ss_pred hh-----ccC-ccHHHHHHHHHHHHhcCCeEEEEccch
Q 000823 1008 SK-----WFG-EGEKYVKAVFSLASKIAPSVIFVDEVD 1039 (1267)
Q Consensus 1008 s~-----~~G-e~e~~v~~lF~~A~k~~PsIIfIDEID 1039 (1267)
-. .+. ........+...+.+..|++|+|+||.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 10 011 111234566677778899999999995
No 342
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.78 E-value=0.0014 Score=68.38 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=29.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEee
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~ 1002 (1267)
+..|+|+|+||+|||++|++||+.++++++..+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 468999999999999999999999999888654
No 343
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.76 E-value=0.0018 Score=79.83 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=47.2
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCceEEeec
Q 000823 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 1003 (1267)
Q Consensus 933 t~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el-g~~fi~I~~ 1003 (1267)
-|+|+.|++++++++.+++..... ++..+..-++|.||||+|||+||+.||+.+ .++++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~--------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ--------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH--------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 577899999999999888742111 112233579999999999999999999988 456666543
No 344
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.75 E-value=0.01 Score=66.22 Aligned_cols=74 Identities=24% Similarity=0.358 Sum_probs=47.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeecccc----chh--ccC-------------------------cc
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----TSK--WFG-------------------------EG 1014 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL----~s~--~~G-------------------------e~ 1014 (1267)
+..-++|.||+|||||+++..++..+ +..+++++..+- ... .+| ..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHH
Confidence 34579999999999999986665444 566666664321 000 000 01
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccchhhh
Q 000823 1015 EKYVKAVFSLASKIAPSVIFVDEVDSML 1042 (1267)
Q Consensus 1015 e~~v~~lF~~A~k~~PsIIfIDEID~L~ 1042 (1267)
+..+..+...+....|.+++|||+-.+.
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 3344555666656678999999998765
No 345
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.0035 Score=73.85 Aligned_cols=118 Identities=16% Similarity=0.210 Sum_probs=77.1
Q ss_pred ecccCCCCCCCC-CC----CCCCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhcc-CCCeEEEEcchhhhhcC
Q 000823 633 VRFDKPIPDGVD-LG----GQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESR-SCPFILFMKDAEKSIAG 706 (1267)
Q Consensus 633 v~Fd~~~~~~~~-l~----~~c~~~~~ff~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~-~~p~ILfi~di~~~l~g 706 (1267)
.+|-+|||+||| || +.-.-. |..-++.-. ...-|+.++|.+..... ..-.||||||||.+=-.
T Consensus 51 mIl~GPPG~GKTTlA~liA~~~~~~---f~~~sAv~~--------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 51 MILWGPPGTGKTTLARLIAGTTNAA---FEALSAVTS--------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred eEEECCCCCCHHHHHHHHHHhhCCc---eEEeccccc--------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 689999999999 33 322111 222222211 23345666666633221 34799999999995556
Q ss_pred CcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhh
Q 000823 707 NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTK 786 (1267)
Q Consensus 707 ~~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~r 786 (1267)
++|+ |.+.++. |.|++||+||-..+ |. +..+|.-
T Consensus 120 QQD~---lLp~vE~--G~iilIGATTENPs------------------------------F~-----------ln~ALlS 153 (436)
T COG2256 120 QQDA---LLPHVEN--GTIILIGATTENPS------------------------------FE-----------LNPALLS 153 (436)
T ss_pred hhhh---hhhhhcC--CeEEEEeccCCCCC------------------------------ee-----------ecHHHhh
Confidence 6666 6777866 99999999997653 22 4556666
Q ss_pred cCCCeEEEcCCCHHHHHHHHHH
Q 000823 787 LFPNKVTIHMPQDEALLASWKH 808 (1267)
Q Consensus 787 rF~~~IeI~LPdeE~Rl~IwK~ 808 (1267)
|- +.+++..=+.++-.+.++.
T Consensus 154 R~-~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 154 RA-RVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred hh-heeeeecCCHHHHHHHHHH
Confidence 66 6778888788888888776
No 346
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.72 E-value=0.0025 Score=68.92 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=56.3
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCceEEeeccccc----hhccCccHH-------------HHHHHHHHHHhcCCe
Q 000823 973 ILLFGPPGTGKTMLAKAV-ATEA---GANFINISMSSIT----SKWFGEGEK-------------YVKAVFSLASKIAPS 1031 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkAL-A~el---g~~fi~I~~seL~----s~~~Ge~e~-------------~v~~lF~~A~k~~Ps 1031 (1267)
.|++|.||+|||+.|-.. .... |.+++. +...|. ....+.... ...........-..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 689999999999987655 4433 555544 333221 111010000 001111111111468
Q ss_pred EEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCC
Q 000823 1032 VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVN 1103 (1267)
Q Consensus 1032 IIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~ 1103 (1267)
||+|||+..+++.+.... ......++ ++...+ ...+-||.+|-.+..+|..+++..+..+++.
T Consensus 82 liviDEa~~~~~~r~~~~--~~~~~~~~-~l~~hR------h~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG--KKVPEIIE-FLAQHR------HYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHHH-GGGGCC------CTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred EEEEECChhhcCCCcccc--ccchHHHH-HHHHhC------cCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 999999999998875521 11123333 332222 2356788889999999999988666555544
No 347
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.69 E-value=0.0044 Score=67.36 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=51.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccc----hhccCccHHHHHHHHHHHH---------hcCCeEEE
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----SKWFGEGEKYVKAVFSLAS---------KIAPSVIF 1034 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~----s~~~Ge~e~~v~~lF~~A~---------k~~PsIIf 1034 (1267)
+-++|.||||||||++++.++..+ +..++.+.+..-. ....|.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 468889999999999999987666 6677766653211 1111111111222221111 12347999
Q ss_pred EccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC
Q 000823 1035 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1084 (1267)
Q Consensus 1035 IDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~ 1084 (1267)
|||+..+. ...+..++..... .+.++++++-.+.
T Consensus 99 VDEasmv~------------~~~~~~ll~~~~~----~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVD------------SRQLARLLRLAKK----SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-B------------HHHHHHHHHHS-T-----T-EEEEEE-TTS
T ss_pred EecccccC------------HHHHHHHHHHHHh----cCCEEEEECCcch
Confidence 99998662 2233333333332 2467888887775
No 348
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.68 E-value=0.0071 Score=70.63 Aligned_cols=76 Identities=26% Similarity=0.325 Sum_probs=51.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccch----------------hccCccHHHHHHHHHHHHhcC
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIA 1029 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s----------------~~~Ge~e~~v~~lF~~A~k~~ 1029 (1267)
+..-++|+||||+|||+||..++... +..++.++..+-.. ......+..+..+...++...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~ 133 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGA 133 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccC
Confidence 33568999999999999988876554 67777777643211 011122334444444556667
Q ss_pred CeEEEEccchhhhcC
Q 000823 1030 PSVIFVDEVDSMLGR 1044 (1267)
Q Consensus 1030 PsIIfIDEID~L~~~ 1044 (1267)
+.+|+||-+..|.+.
T Consensus 134 ~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 134 VDIIVVDSVAALVPK 148 (321)
T ss_pred CcEEEEcchhhhccc
Confidence 899999999998754
No 349
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.66 E-value=0.0062 Score=67.03 Aligned_cols=36 Identities=36% Similarity=0.588 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeecc
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1004 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~s 1004 (1267)
+..-++|+||||+|||+++..+|... +..+++++..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 33568999999999999999998755 7788888876
No 350
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.63 E-value=0.0042 Score=62.80 Aligned_cols=33 Identities=52% Similarity=0.805 Sum_probs=26.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceEEeeccccc
Q 000823 973 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~ 1007 (1267)
|+++||||+|||++|+.++..++..+ ++...+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~--i~~D~~~ 34 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV--ISQDEIR 34 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE--EeHHHHH
Confidence 78999999999999999999999444 5544443
No 351
>PHA02774 E1; Provisional
Probab=96.60 E-value=0.017 Score=71.60 Aligned_cols=129 Identities=16% Similarity=0.272 Sum_probs=72.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEE-eeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCc
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG 1049 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~-I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~ 1049 (1267)
+.++|+||||||||++|.+|++.++..++. ++... .+. +..+.. -.|++|||+-.-
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~Fw----------Lqpl~d--~ki~vlDD~t~~-------- 491 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HFW----------LQPLAD--AKIALLDDATHP-------- 491 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---ccc----------cchhcc--CCEEEEecCcch--------
Confidence 579999999999999999999999655544 55321 110 111111 259999999210
Q ss_pred hHHHHHHHHHhhhhhccCCcc----cCC-----CcEEEEEecCCCCCCcH---HHHhcccccccCC-------------C
Q 000823 1050 EHEAMRKMKNEFMVNWDGLRT----KDT-----ERILVLAATNRPFDLDE---AVIRRLPRRLMVN-------------L 1104 (1267)
Q Consensus 1050 ~~~~~~~il~eLL~~ldgl~~----~~~-----~~VlVIaTTN~p~~Ld~---aLlrRFd~vI~~~-------------~ 1104 (1267)
-...... .|...++|-.. +.. ..--+|.|||..-.-++ .|.+|+ ..+.|+ .
T Consensus 492 ~w~y~d~---~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi-~~f~F~n~~P~d~~G~P~f~ 567 (613)
T PHA02774 492 CWDYIDT---YLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRI-TVFEFPNPFPLDENGNPVFE 567 (613)
T ss_pred HHHHHHH---HHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhE-EEEECCCCCCcCCCCCEeee
Confidence 0111111 12333444310 000 12346778885433343 344464 333332 2
Q ss_pred CCHHHHHHHHHHHHhhCCCCCc
Q 000823 1105 PDAPNRAKILQVILAKEDLSPD 1126 (1267)
Q Consensus 1105 Pd~eeR~eIL~~ll~k~~l~~d 1126 (1267)
.+...-+.+|+.+.....+.++
T Consensus 568 ltd~~WKsFF~rlw~~LdL~d~ 589 (613)
T PHA02774 568 LTDANWKSFFERLWSQLDLSDQ 589 (613)
T ss_pred eCchhHHHHHHHHHHHcCCCCc
Confidence 3557778899998888877643
No 352
>PRK04296 thymidine kinase; Provisional
Probab=96.60 E-value=0.014 Score=63.15 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=41.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCceEEeec----cc----cchhccCcc-H----HHHHHHHHHH--HhcCCeEE
Q 000823 972 GILLFGPPGTGKTMLAKAVATEA---GANFINISM----SS----ITSKWFGEG-E----KYVKAVFSLA--SKIAPSVI 1033 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~----se----L~s~~~Ge~-e----~~v~~lF~~A--~k~~PsII 1033 (1267)
-.|++||+|+|||+++..++.++ +..++.+.. .. +.+. .|.. + .....++..+ ....+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 47899999999999998888776 555555532 11 1111 1210 0 1122333333 23456899
Q ss_pred EEccchhh
Q 000823 1034 FVDEVDSM 1041 (1267)
Q Consensus 1034 fIDEID~L 1041 (1267)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999755
No 353
>PRK13695 putative NTPase; Provisional
Probab=96.59 E-value=0.007 Score=64.09 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000823 972 GILLFGPPGTGKTMLAKAVATEA 994 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~el 994 (1267)
.++|.|++|+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988775
No 354
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.011 Score=65.37 Aligned_cols=71 Identities=28% Similarity=0.408 Sum_probs=48.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--C------CceEEeec-cccchhccCccHH-------------HHHHHHHHHHhc
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA--G------ANFINISM-SSITSKWFGEGEK-------------YVKAVFSLASKI 1028 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el--g------~~fi~I~~-seL~s~~~Ge~e~-------------~v~~lF~~A~k~ 1028 (1267)
.+.||.||||||||+|.+-||+-+ | ..+.-++- +++.+-..|.+.. .-..++...+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 468999999999999999999877 2 23444443 3443333333221 223366777888
Q ss_pred CCeEEEEccchhh
Q 000823 1029 APSVIFVDEVDSM 1041 (1267)
Q Consensus 1029 ~PsIIfIDEID~L 1041 (1267)
.|-||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999744
No 355
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.59 E-value=0.0039 Score=67.77 Aligned_cols=68 Identities=22% Similarity=0.319 Sum_probs=43.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC----CceEEeec-cccch---------hccCccHHHHHHHHHHHHhcCCeEEEEcc
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAG----ANFINISM-SSITS---------KWFGEGEKYVKAVFSLASKIAPSVIFVDE 1037 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg----~~fi~I~~-seL~s---------~~~Ge~e~~v~~lF~~A~k~~PsIIfIDE 1037 (1267)
-++|.||+|+|||+++++++..+. ..++.+.. .++.. ..+|.........+..+.+..|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 589999999999999999988874 22232221 12110 01122223345556667777899999999
Q ss_pred ch
Q 000823 1038 VD 1039 (1267)
Q Consensus 1038 ID 1039 (1267)
+-
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 83
No 356
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.58 E-value=0.031 Score=73.44 Aligned_cols=156 Identities=16% Similarity=0.220 Sum_probs=84.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeecc--c-----c-------chhc-cCc---------------cHHHHHH
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS--S-----I-------TSKW-FGE---------------GEKYVKA 1020 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~s--e-----L-------~s~~-~Ge---------------~e~~v~~ 1020 (1267)
+-++|+||+|.|||+++...+...+ ++..++.. + + +... .+. ....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4699999999999999999887776 65555442 1 0 0000 000 0112233
Q ss_pred HHHHHHh-cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhccccc
Q 000823 1021 VFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRR 1099 (1267)
Q Consensus 1021 lF~~A~k-~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~v 1099 (1267)
++..... ..|.+|+|||++.+- . ......+..|+ +.. +.++.+|.++...-.+.-.-++.-+..
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----~----~~~~~~l~~l~---~~~----~~~~~lv~~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----N----PEIHEAMRFFL---RHQ----PENLTLVVLSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----C----hHHHHHHHHHH---HhC----CCCeEEEEEeCCCCCCchHhHHhcCcc
Confidence 3333333 568999999999662 1 11223333333 222 233444445554222321111111223
Q ss_pred ccCC----CCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCCHHHHH
Q 000823 1100 LMVN----LPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLK 1145 (1267)
Q Consensus 1100 I~~~----~Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~TeGySg~DL~ 1145 (1267)
+.+. ..+.++-.+++...+.. .+ ...++..|.+.|+|+- .-|+
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gwp-~~l~ 223 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGWA-TALQ 223 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCChH-HHHH
Confidence 4444 56888888888765432 12 3456788999999954 4454
No 357
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.57 E-value=0.0076 Score=61.20 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=37.0
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000823 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 994 (1267)
Q Consensus 936 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el 994 (1267)
.+.|+.-+.+.+...+...+.. ....+| --+-|+|++|||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~------~~p~Kp-LVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLAN------PNPRKP-LVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcC------CCCCCC-EEEEeecCCCCcHHHHHHHHHHHH
Confidence 4567777777777766643322 122333 456699999999999999999986
No 358
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.52 E-value=0.01 Score=69.38 Aligned_cols=74 Identities=28% Similarity=0.352 Sum_probs=50.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccch----------------hccCccHHHHHHHHHHHHhcCCe
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIAPS 1031 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s----------------~~~Ge~e~~v~~lF~~A~k~~Ps 1031 (1267)
+-++|+||||+|||+||-.++... +..++.++...-.. ......+..+..+-..++...+.
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 458899999999999999887544 77788887643111 01112233333344445566789
Q ss_pred EEEEccchhhhcC
Q 000823 1032 VIFVDEVDSMLGR 1044 (1267)
Q Consensus 1032 IIfIDEID~L~~~ 1044 (1267)
+|+||-+-.|.++
T Consensus 136 lIVIDSvaal~~~ 148 (325)
T cd00983 136 LIVVDSVAALVPK 148 (325)
T ss_pred EEEEcchHhhccc
Confidence 9999999999753
No 359
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.16 Score=61.39 Aligned_cols=68 Identities=21% Similarity=0.352 Sum_probs=40.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCceEEeeccccc-------hhc---cCc---cHHHHHHHHHHHHhcCCeEE
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSIT-------SKW---FGE---GEKYVKAVFSLASKIAPSVI 1033 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el----g~~fi~I~~seL~-------s~~---~Ge---~e~~v~~lF~~A~k~~PsII 1033 (1267)
.-++|.||+|+|||+++..+|..+ |..+..+++..+. ..| .|- ....+..+...+......+|
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 468899999999999999998754 4445445443321 111 111 11123334444444566889
Q ss_pred EEccc
Q 000823 1034 FVDEV 1038 (1267)
Q Consensus 1034 fIDEI 1038 (1267)
+||=.
T Consensus 304 LIDTa 308 (432)
T PRK12724 304 LIDTA 308 (432)
T ss_pred EEeCC
Confidence 99954
No 360
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.49 E-value=0.014 Score=68.04 Aligned_cols=102 Identities=16% Similarity=0.304 Sum_probs=58.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCce-EEeeccccch-------hccCccHHHHHHHHHHHHhcCCeEEEEccc
Q 000823 967 TKPCKGILLFGPPGTGKTMLAKAVATEAGANF-INISMSSITS-------KWFGEGEKYVKAVFSLASKIAPSVIFVDEV 1038 (1267)
Q Consensus 967 ~kP~~gVLL~GPpGTGKT~LAkALA~elg~~f-i~I~~seL~s-------~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEI 1038 (1267)
..+++|+.|||+-|.|||+|....-..+-.+- .++....++. ...|+. .-+..+-.... ....||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~-~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELA-AETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHH-hcCCEEEeeee
Confidence 34779999999999999999999888774322 2222111111 112332 11111111111 12359999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC
Q 000823 1039 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1267)
Q Consensus 1039 D~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1267)
+.- ...+--.+.+++++|+ ...|.+++|+|.+
T Consensus 140 ~Vt-----DI~DAMiL~rL~~~Lf----------~~GV~lvaTSN~~ 171 (367)
T COG1485 140 EVT-----DIADAMILGRLLEALF----------ARGVVLVATSNTA 171 (367)
T ss_pred eec-----ChHHHHHHHHHHHHHH----------HCCcEEEEeCCCC
Confidence 732 2233344556666665 3578999999973
No 361
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.47 E-value=0.096 Score=68.21 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=30.3
Q ss_pred CCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 000823 465 VNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 500 (1267)
Q Consensus 465 ~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~~D 500 (1267)
..+.|+|.||+| ..+.+|+|++|+.++-++.-++
T Consensus 348 ~g~~i~l~GppG--~GKTtl~~~ia~~l~~~~~~i~ 381 (784)
T PRK10787 348 KGPILCLVGPPG--VGKTSLGQSIAKATGRKYVRMA 381 (784)
T ss_pred CCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEEE
Confidence 346799999999 8899999999999999987776
No 362
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.47 E-value=0.0065 Score=69.42 Aligned_cols=69 Identities=26% Similarity=0.341 Sum_probs=44.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC----------ceEEee-ccccchhccCcc-------------HHHHHHHHHHHH
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGA----------NFINIS-MSSITSKWFGEG-------------EKYVKAVFSLAS 1026 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~----------~fi~I~-~seL~s~~~Ge~-------------e~~v~~lF~~A~ 1026 (1267)
.+++|.||+|+|||+|.++++..+.. .+..++ ..++...+.+-+ ......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999988732 222222 122211111111 111234666777
Q ss_pred hcCCeEEEEccch
Q 000823 1027 KIAPSVIFVDEVD 1039 (1267)
Q Consensus 1027 k~~PsIIfIDEID 1039 (1267)
.+.|.||++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999963
No 363
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.46 E-value=0.024 Score=68.32 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=68.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchH
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 1051 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~ 1051 (1267)
-++|+||.+||||++++.+...+.-.++.++..++......- ......+..+.......||||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 799999999999999988888875556666665554332211 122223333333345799999998661
Q ss_pred HHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC---CCCcHHHHhcccccccCCCCCHHHHHH
Q 000823 1052 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP---FDLDEAVIRRLPRRLMVNLPDAPNRAK 1112 (1267)
Q Consensus 1052 ~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p---~~Ld~aLlrRFd~vI~~~~Pd~eeR~e 1112 (1267)
.+ .+.+.. ..|... .+++ |.+++.. ..+.+.+..|. ..+.+.+.+..+...
T Consensus 108 ~W-~~~lk~---l~d~~~----~~v~-itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 108 DW-ERALKY---LYDRGN----LDVL-ITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred hH-HHHHHH---HHcccc----ceEE-EECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 11 122222 223221 1334 4444432 23334455575 567777778877754
No 364
>PRK13947 shikimate kinase; Provisional
Probab=96.44 E-value=0.0029 Score=66.37 Aligned_cols=32 Identities=44% Similarity=0.568 Sum_probs=29.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEeec
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAGANFINISM 1003 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~ 1003 (1267)
+|+|.|+||+|||++|+.||+.++++|+..+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 69999999999999999999999999977653
No 365
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.41 E-value=0.0038 Score=74.79 Aligned_cols=81 Identities=15% Similarity=0.295 Sum_probs=62.7
Q ss_pred Cccccccccccccccc-hhHHHHHHHHHhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEE
Q 000823 420 GTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 498 (1267)
Q Consensus 420 ~~~~~vsfd~FPYyls-e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~ 498 (1267)
|++|.-.++.| ++. ++.|.+|.-|+|.|.+...+..-.++ ....+.|||.||+| ..+.+||||||+.++++++-
T Consensus 3 P~~I~~~Ld~~--IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~-e~~p~~ILLiGppG--~GKT~lAraLA~~l~~~fi~ 77 (441)
T TIGR00390 3 PREIVAELDKY--IIGQDNAKKSVAIALRNRYRRSQLNEELKD-EVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIK 77 (441)
T ss_pred HHHHHHHHhhh--ccCHHHHHHHHHHHHHhhhhhhcccccccc-ccCCceEEEECCCC--CCHHHHHHHHHHHhCCeEEE
Confidence 44555555653 444 89999999999999776655432222 22347899999999 99999999999999999999
Q ss_pred EeccccC
Q 000823 499 FDSHSLL 505 (1267)
Q Consensus 499 ~D~~~~~ 505 (1267)
+|.+.|.
T Consensus 78 vdat~~~ 84 (441)
T TIGR00390 78 VEATKFT 84 (441)
T ss_pred eecceee
Confidence 9998885
No 366
>PRK03839 putative kinase; Provisional
Probab=96.40 E-value=0.0028 Score=67.31 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEee
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg~~fi~I~ 1002 (1267)
.|+|.|+||+|||++++.||+.++++|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999987765
No 367
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.021 Score=68.48 Aligned_cols=113 Identities=22% Similarity=0.282 Sum_probs=61.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-------CCce--EEeecccc--------chhccC------ccHHHHHHHHHHHH
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEA-------GANF--INISMSSI--------TSKWFG------EGEKYVKAVFSLAS 1026 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~el-------g~~f--i~I~~seL--------~s~~~G------e~e~~v~~lF~~A~ 1026 (1267)
+..++|+||+|+|||+++..+|..+ +..+ +.+|+-.. .....| .....+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 3679999999999999999998765 2333 44443111 111111 1222333333332
Q ss_pred hcCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcc
Q 000823 1027 KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRL 1096 (1267)
Q Consensus 1027 k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRF 1096 (1267)
....+|+||.+..... .... +.++...++.... +...++|+.+|.....+.. +.++|
T Consensus 253 -~~~DlVLIDTaGr~~~------~~~~----l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~-~~~~~ 309 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPK------DFMK----LAEMKELLNACGR-DAEFHLAVSSTTKTSDVKE-IFHQF 309 (388)
T ss_pred -CCCCEEEEcCCCCCcc------CHHH----HHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHH-HHHHh
Confidence 3467999999986521 1111 2233333333221 2256788888877666663 44444
No 368
>PRK10536 hypothetical protein; Provisional
Probab=96.36 E-value=0.017 Score=65.50 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 000823 972 GILLFGPPGTGKTMLAKAVATE 993 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~e 993 (1267)
-+++.||+|||||+||.++|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999985
No 369
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.34 E-value=0.0035 Score=64.23 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEee
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg~~fi~I~ 1002 (1267)
+|+|+|+||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988665
No 370
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.32 E-value=0.022 Score=66.93 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=86.4
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch-------
Q 000823 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------- 1008 (1267)
Q Consensus 936 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s------- 1008 (1267)
.+.+-+.+...|..++.. ....-|..+.|+|-.|||||++.+++.+.++.+.+.+++-+.+.
T Consensus 7 ~v~~Re~qi~~L~~Llg~-----------~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN-----------NSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEK 75 (438)
T ss_pred CccchHHHHHHHHHHhCC-----------CCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHH
Confidence 344556777777776642 11223356799999999999999999999999999888854311
Q ss_pred ---hc-----cCcc----HHHHHH---HHH---HHHhc-CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCc
Q 000823 1009 ---KW-----FGEG----EKYVKA---VFS---LASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1069 (1267)
Q Consensus 1009 ---~~-----~Ge~----e~~v~~---lF~---~A~k~-~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~ 1069 (1267)
+. -|.. ..++.. +|. .+.+. +.-.|++|++|.+-. ....+++.++..-.-+.
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD---------~~a~ll~~l~~L~el~~ 146 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD---------MDAILLQCLFRLYELLN 146 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc---------cchHHHHHHHHHHHHhC
Confidence 11 1111 111211 222 22222 356889999999831 11233443333222221
Q ss_pred ccCCCcEEEEEecCCCCCCcHHHHhc---c-cccccCCCCCHHHHHHHHHHH
Q 000823 1070 TKDTERILVLAATNRPFDLDEAVIRR---L-PRRLMVNLPDAPNRAKILQVI 1117 (1267)
Q Consensus 1070 ~~~~~~VlVIaTTN~p~~Ld~aLlrR---F-d~vI~~~~Pd~eeR~eIL~~l 1117 (1267)
.+.++|.....+. ..-...+ + ..+++||.|+.++..+|+..-
T Consensus 147 ----~~~i~iils~~~~--e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 147 ----EPTIVIILSAPSC--EKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ----CCceEEEEecccc--HHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 1223333222211 1111111 1 246788999999999888653
No 371
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.30 E-value=0.013 Score=72.29 Aligned_cols=95 Identities=20% Similarity=0.312 Sum_probs=61.7
Q ss_pred CCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CceEEee-ccc
Q 000823 930 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSS 1005 (1267)
Q Consensus 930 ~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg---~~fi~I~-~se 1005 (1267)
...++++++-.++..+.|+..+.. +.+-+|++||+|+|||++.+++..++. .+++.+- ..+
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE 281 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVE 281 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCee
Confidence 345788888777877787776642 323589999999999999998887763 3455442 222
Q ss_pred cchhccCc------cHHHHHHHHHHHHhcCCeEEEEccch
Q 000823 1006 ITSKWFGE------GEKYVKAVFSLASKIAPSVIFVDEVD 1039 (1267)
Q Consensus 1006 L~s~~~Ge------~e~~v~~lF~~A~k~~PsIIfIDEID 1039 (1267)
+.-..++. .......+...+-+..|.||+|.||-
T Consensus 282 ~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 282 YQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred eecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 21111111 11123445566677899999999995
No 372
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.29 E-value=0.022 Score=60.72 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=46.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchh-ccC----------------ccHHHHHHHHHHHHhcCCeEEE
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-WFG----------------EGEKYVKAVFSLASKIAPSVIF 1034 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~-~~G----------------e~e~~v~~lF~~A~k~~PsIIf 1034 (1267)
.+|+.|+||+|||++|..++..++.+++++........ +.. +....+..++... ...+.+|+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 58999999999999999999998877777765432211 000 0011233333221 23456899
Q ss_pred EccchhhhcC
Q 000823 1035 VDEVDSMLGR 1044 (1267)
Q Consensus 1035 IDEID~L~~~ 1044 (1267)
||-+..|...
T Consensus 82 ID~Lt~~~~n 91 (170)
T PRK05800 82 VDCLTTWVTN 91 (170)
T ss_pred ehhHHHHHHH
Confidence 9999998643
No 373
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.27 E-value=0.13 Score=59.43 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=47.4
Q ss_pred CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC----------C-----CCcHHHH
Q 000823 1029 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP----------F-----DLDEAVI 1093 (1267)
Q Consensus 1029 ~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p----------~-----~Ld~aLl 1093 (1267)
.+-||||||+|++-+ +....+++.+-..++- .++++|.+.+.. . ..-...+
T Consensus 172 ~~iViiIDdLDR~~~--------~~i~~~l~~ik~~~~~------~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yL 237 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSP--------EEIVELLEAIKLLLDF------PNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYL 237 (325)
T ss_pred ceEEEEEcchhcCCc--------HHHHHHHHHHHHhcCC------CCeEEEEEecHHHHHHHHHhhcCcccccccHHHHH
Confidence 356999999998831 2223333332222222 456777766642 0 1223445
Q ss_pred h-cccccccCCCCCHHHHHHHHHHHHhh
Q 000823 1094 R-RLPRRLMVNLPDAPNRAKILQVILAK 1120 (1267)
Q Consensus 1094 r-RFd~vI~~~~Pd~eeR~eIL~~ll~k 1120 (1267)
. -|+..+.+|.|+..+...++...+..
T Consensus 238 eKiiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 238 EKIIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred HhhcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 5 45667888999999998888888655
No 374
>PRK00625 shikimate kinase; Provisional
Probab=96.25 E-value=0.0041 Score=66.45 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=29.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEee
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg~~fi~I~ 1002 (1267)
.|+|.|.||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998876
No 375
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.24 E-value=0.013 Score=57.06 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000823 972 GILLFGPPGTGKTMLAKAVATEA 994 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~el 994 (1267)
+++|+||+|+|||+++..++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888887666
No 376
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.24 E-value=0.0091 Score=71.09 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAG 995 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg 995 (1267)
...||+||+|+|||+|++.|++...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Confidence 3689999999999999999998773
No 377
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.20 E-value=0.0074 Score=68.32 Aligned_cols=97 Identities=22% Similarity=0.374 Sum_probs=58.6
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CceEEee-cccc
Q 000823 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSI 1006 (1267)
Q Consensus 931 ~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg---~~fi~I~-~seL 1006 (1267)
..++++++-.....+.+.+++.... +..+.+|+.||+|+|||+++++++..+. ..++.+. ..++
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v------------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAV------------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCH------------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccHhhccCchhhHHHHHHHHhhcc------------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 4567777666655566666554211 1236899999999999999999998883 3444433 2222
Q ss_pred chh------cc-CccHHHHHHHHHHHHhcCCeEEEEccch
Q 000823 1007 TSK------WF-GEGEKYVKAVFSLASKIAPSVIFVDEVD 1039 (1267)
Q Consensus 1007 ~s~------~~-Ge~e~~v~~lF~~A~k~~PsIIfIDEID 1039 (1267)
.-. +. .........++..+-+..|++|+|.||-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 111 00 1122345667778888899999999995
No 378
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.017 Score=68.74 Aligned_cols=109 Identities=21% Similarity=0.304 Sum_probs=58.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----C-CceEEeecccc----------chhccCcc------HHHHHHHHHHHHhc
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSSI----------TSKWFGEG------EKYVKAVFSLASKI 1028 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~el----g-~~fi~I~~seL----------~s~~~Ge~------e~~v~~lF~~A~k~ 1028 (1267)
...++|.||+|+|||+++..||..+ | ..+..+....+ +.+..|-+ ...+...+. +-.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~--~l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA--ELR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH--Hhc
Confidence 3579999999999999999999764 3 23444443332 11111111 111122222 223
Q ss_pred CCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHH
Q 000823 1029 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAV 1092 (1267)
Q Consensus 1029 ~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aL 1092 (1267)
...+|+||.....- . ...+.+.+..+..... .-..++|+.+|+..+.++..+
T Consensus 215 ~~DlVLIDTaG~~~------~-----d~~l~e~La~L~~~~~-~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 215 NKHMVLIDTIGMSQ------R-----DRTVSDQIAMLHGADT-PVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred CCCEEEEcCCCCCc------c-----cHHHHHHHHHHhccCC-CCeEEEEecCccChHHHHHHH
Confidence 45899999986331 0 1112222333333221 134678888888777666543
No 379
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.15 E-value=0.048 Score=66.60 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=53.1
Q ss_pred CCeEEEEcchhhhhcC---CcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcc
Q 000823 691 CPFILFMKDAEKSIAG---NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSF 767 (1267)
Q Consensus 691 ~p~ILfi~di~~~l~g---~~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~ 767 (1267)
++-+|+|||++.+.+. +.++++.|....+. |..+||++...+.. +
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~--~k~iIitsd~~p~~------------------------------l 241 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS--GKQIVICSDREPQK------------------------------L 241 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc--CCeEEEECCCCHHH------------------------------H
Confidence 5669999999986653 34677776665543 56677776543321 1
Q ss_pred ccccccCCCchhHHHHHhhcC--CCeEEEcCCCHHHHHHHHHHhhh
Q 000823 768 GRLHDRGKEIPKATKLLTKLF--PNKVTIHMPQDEALLASWKHQLD 811 (1267)
Q Consensus 768 ~r~~~~~~~~~~~d~~L~rrF--~~~IeI~LPdeE~Rl~IwK~qLe 811 (1267)
..+...|..|| ...++|.+|+.+.|..|++...+
T Consensus 242 ----------~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 242 ----------SEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred ----------HHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 11345566666 34788999999999999996543
No 380
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.15 E-value=0.039 Score=61.59 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=27.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeec
Q 000823 968 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1003 (1267)
Q Consensus 968 kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~ 1003 (1267)
.+...+||+||||+|||++|..++.+. |-+.++++.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 345679999999999999998776542 666666654
No 381
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.14 E-value=0.0094 Score=70.30 Aligned_cols=69 Identities=22% Similarity=0.301 Sum_probs=45.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CceEEee-ccccc---------hhccCccHHHHHHHHHHHHhcCCeEEEEc
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAG----ANFINIS-MSSIT---------SKWFGEGEKYVKAVFSLASKIAPSVIFVD 1036 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg----~~fi~I~-~seL~---------s~~~Ge~e~~v~~lF~~A~k~~PsIIfID 1036 (1267)
+.+||.||+|+|||++.++++..+. ..++.+. ..++. ..-+|.........+..+-+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 5799999999999999999998763 2333332 11211 11123222234556667778899999999
Q ss_pred cch
Q 000823 1037 EVD 1039 (1267)
Q Consensus 1037 EID 1039 (1267)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 994
No 382
>PRK14532 adenylate kinase; Provisional
Probab=96.13 E-value=0.0049 Score=65.88 Aligned_cols=35 Identities=34% Similarity=0.606 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s 1008 (1267)
.|+|.||||+|||++|+.||+.+++.++ ++.+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHH
Confidence 5899999999999999999999987665 4444443
No 383
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.13 E-value=0.039 Score=61.25 Aligned_cols=74 Identities=22% Similarity=0.332 Sum_probs=47.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccch--------------hcc-------------------C
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS--------------KWF-------------------G 1012 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s--------------~~~-------------------G 1012 (1267)
+...++++|+||+|||+++.+++... +.++++++..+-.. +++ .
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~ 103 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNST 103 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcc
Confidence 34679999999999999999997653 66676666532100 000 0
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEEccchhhh
Q 000823 1013 EGEKYVKAVFSLASKIAPSVIFVDEVDSML 1042 (1267)
Q Consensus 1013 e~e~~v~~lF~~A~k~~PsIIfIDEID~L~ 1042 (1267)
..+..+..+........|.+|+||++..+.
T Consensus 104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 104 LANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 012233444445555688999999999764
No 384
>PRK04195 replication factor C large subunit; Provisional
Probab=96.11 E-value=0.08 Score=65.35 Aligned_cols=56 Identities=29% Similarity=0.377 Sum_probs=40.9
Q ss_pred chhHHHHHHHHHhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEeccc
Q 000823 435 SENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 503 (1267)
Q Consensus 435 se~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~~D~~~ 503 (1267)
.+..+..|...+-.+.+. ...+.+||+||+| +.+.+||+|||++++..++.++.++
T Consensus 19 ~~~~~~~l~~~l~~~~~g-----------~~~~~lLL~GppG--~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 19 NEKAKEQLREWIESWLKG-----------KPKKALLLYGPPG--VGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CHHHHHHHHHHHHHHhcC-----------CCCCeEEEECCCC--CCHHHHHHHHHHHcCCCEEEEcccc
Confidence 366666666655333311 1156899999999 8999999999999998887777654
No 385
>PRK13949 shikimate kinase; Provisional
Probab=96.11 E-value=0.005 Score=65.42 Aligned_cols=32 Identities=47% Similarity=0.708 Sum_probs=29.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEee
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~ 1002 (1267)
..|+|.|+||+|||++++.+|+.++++|+..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999988877
No 386
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.10 E-value=0.027 Score=68.89 Aligned_cols=76 Identities=21% Similarity=0.300 Sum_probs=52.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchh------ccCcc--------HHHHHHHHHHHHhcCC
Q 000823 968 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGEG--------EKYVKAVFSLASKIAP 1030 (1267)
Q Consensus 968 kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~------~~Ge~--------e~~v~~lF~~A~k~~P 1030 (1267)
.+..-+||.|+||+|||+|+..+|..+ +.++++++..+-... .+|.. +..+..+...+.+..|
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~ 171 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENP 171 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCC
Confidence 344568999999999999999997765 457778776443211 11111 1234556666677789
Q ss_pred eEEEEccchhhhc
Q 000823 1031 SVIFVDEVDSMLG 1043 (1267)
Q Consensus 1031 sIIfIDEID~L~~ 1043 (1267)
.+|+||.|..+..
T Consensus 172 ~~vVIDSIq~l~~ 184 (454)
T TIGR00416 172 QACVIDSIQTLYS 184 (454)
T ss_pred cEEEEecchhhcc
Confidence 9999999998864
No 387
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.10 E-value=0.021 Score=69.42 Aligned_cols=99 Identities=22% Similarity=0.274 Sum_probs=67.4
Q ss_pred CcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEee
Q 000823 923 DVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1267)
Q Consensus 923 ~ii~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~ 1002 (1267)
.+.+......++++++......+.+.+.+. +|.+=+|++||+|+|||+...++.++++.+..+|-
T Consensus 226 Ril~~~~~~l~l~~Lg~~~~~~~~~~~~~~---------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~ 290 (500)
T COG2804 226 RILDKDQVILDLEKLGMSPFQLARLLRLLN---------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNII 290 (500)
T ss_pred EEeccccccCCHHHhCCCHHHHHHHHHHHh---------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEE
Confidence 334444456788899888888888888775 34455899999999999999999999865444321
Q ss_pred ----ccccc---------hhccCccHHHHHHHHHHHHhcCCeEEEEccch
Q 000823 1003 ----MSSIT---------SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVD 1039 (1267)
Q Consensus 1003 ----~seL~---------s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID 1039 (1267)
+-++. ..-+|- .....+...-++.|+||+|.||-
T Consensus 291 TiEDPVE~~~~gI~Q~qVN~k~gl---tfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 291 TIEDPVEYQLPGINQVQVNPKIGL---TFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred EeeCCeeeecCCcceeecccccCC---CHHHHHHHHhccCCCeEEEeccC
Confidence 11221 111121 12345556668899999999996
No 388
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.09 E-value=0.0051 Score=65.17 Aligned_cols=34 Identities=21% Similarity=0.491 Sum_probs=27.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch
Q 000823 973 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s 1008 (1267)
|+|+||||+|||++|+.||..+++. .+++.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHHH
Confidence 7899999999999999999999864 455555543
No 389
>PRK05973 replicative DNA helicase; Provisional
Probab=96.09 E-value=0.058 Score=60.65 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeecc
Q 000823 968 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1004 (1267)
Q Consensus 968 kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~s 1004 (1267)
.+..-+||.|+||+|||+++-.+|... |.++++++..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 444579999999999999999887655 7677776654
No 390
>PRK06762 hypothetical protein; Provisional
Probab=96.07 E-value=0.017 Score=60.45 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccc
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~ 1007 (1267)
.-++|+|+||+|||++|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4589999999999999999999997666666665543
No 391
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.05 E-value=0.024 Score=62.02 Aligned_cols=35 Identities=37% Similarity=0.580 Sum_probs=28.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceEEeecc
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1004 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~s 1004 (1267)
..-++|+|+||+|||+++..+|.+. +.++++++..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3558999999999999999998765 5677777654
No 392
>PRK13948 shikimate kinase; Provisional
Probab=96.05 E-value=0.0067 Score=65.40 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=32.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEee
Q 000823 967 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1267)
Q Consensus 967 ~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~ 1002 (1267)
.+++..|+|.|.+|+|||++++.+|+.++.+|+..|
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 346678999999999999999999999999999766
No 393
>PRK06217 hypothetical protein; Validated
Probab=96.04 E-value=0.0061 Score=65.20 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEee
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg~~fi~I~ 1002 (1267)
.|+|.|++|+|||++|++|++.++++++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5999999999999999999999999887766
No 394
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.03 E-value=0.053 Score=59.76 Aligned_cols=74 Identities=20% Similarity=0.381 Sum_probs=48.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCceEEeecccc----c-------------------------hhc----
Q 000823 968 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSI----T-------------------------SKW---- 1010 (1267)
Q Consensus 968 kP~~gVLL~GPpGTGKT~LAkALA~el----g~~fi~I~~seL----~-------------------------s~~---- 1010 (1267)
.+...+|+.||||+|||.++..++... |-+++.++..+- . ...
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~ 96 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWS 96 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-T
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccccc
Confidence 344679999999999999999876433 677777665321 0 000
Q ss_pred cCccHHHHHHHHHHHHhcCCeEEEEccchhh
Q 000823 1011 FGEGEKYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1267)
Q Consensus 1011 ~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L 1041 (1267)
....+..+..+...+....+.+++||-+..+
T Consensus 97 ~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 97 PNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp SCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 0122344555666667778899999999999
No 395
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.99 E-value=0.04 Score=60.15 Aligned_cols=69 Identities=25% Similarity=0.401 Sum_probs=41.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCceE-------------Eeeccccchh---ccCccHHHHHHHHHHHHhcC
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFI-------------NISMSSITSK---WFGEGEKYVKAVFSLASKIA 1029 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el-----g~~fi-------------~I~~seL~s~---~~Ge~e~~v~~lF~~A~k~~ 1029 (1267)
.-++|.||.|+|||+|.+.|+... |.++- .+...+-+.. .+......+..+++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 468999999999999999998433 44321 1111110000 00001133556666665557
Q ss_pred CeEEEEccch
Q 000823 1030 PSVIFVDEVD 1039 (1267)
Q Consensus 1030 PsIIfIDEID 1039 (1267)
|.+|++||.-
T Consensus 106 p~llllDEp~ 115 (199)
T cd03283 106 PVLFLLDEIF 115 (199)
T ss_pred CeEEEEeccc
Confidence 8999999974
No 396
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.98 E-value=0.051 Score=61.40 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCceEEeec
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 1003 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el----g~~fi~I~~ 1003 (1267)
+..-++|.||||+|||+++..+|..+ +.+++.++.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44568999999999999999887654 667777665
No 397
>PRK10436 hypothetical protein; Provisional
Probab=95.98 E-value=0.023 Score=69.58 Aligned_cols=100 Identities=18% Similarity=0.277 Sum_probs=64.2
Q ss_pred CCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CceEEe
Q 000823 925 IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINI 1001 (1267)
Q Consensus 925 i~~~~~~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg---~~fi~I 1001 (1267)
++......++++++-.+...+.+++.+. .+.+-+|++||+|+|||++..++..+++ .+++.+
T Consensus 188 l~~~~~~~~L~~LG~~~~~~~~l~~~~~---------------~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~Ti 252 (462)
T PRK10436 188 LQQVQQALDLETLGMTPAQLAQFRQALQ---------------QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSV 252 (462)
T ss_pred eccccCCCCHHHcCcCHHHHHHHHHHHH---------------hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEe
Confidence 3333334578888887777787877664 2335699999999999999888777763 334433
Q ss_pred e-ccccchh-----ccCc-cHHHHHHHHHHHHhcCCeEEEEccch
Q 000823 1002 S-MSSITSK-----WFGE-GEKYVKAVFSLASKIAPSVIFVDEVD 1039 (1267)
Q Consensus 1002 ~-~seL~s~-----~~Ge-~e~~v~~lF~~A~k~~PsIIfIDEID 1039 (1267)
- ..++.-. .++. ........+..+-+..|.||+|.||-
T Consensus 253 EDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 253 EDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred cCCccccCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 2 1222111 0111 11234556667778899999999995
No 398
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.97 E-value=0.016 Score=70.12 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=75.3
Q ss_pred eecccCCCCCCCC-CCCC-CCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhh-ccCCCeEEEEcchhhhhcCCc
Q 000823 632 GVRFDKPIPDGVD-LGGQ-CEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSE-SRSCPFILFMKDAEKSIAGNS 708 (1267)
Q Consensus 632 gv~Fd~~~~~~~~-l~~~-c~~~~~ff~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~-~~~~p~ILfi~di~~~l~g~~ 708 (1267)
.++|.+|+|+||| |+.. +..-+.-|....+.. .+. -.++.+++.+... ...+..||||||||.+-.
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~----~~~----~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--- 106 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATDAPFEALSAVT----SGV----KDLREVIEEARQRRSAGRRTILFIDEIHRFNK--- 106 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc----ccH----HHHHHHHHHHHHhhhcCCceEEEEechhhhCH---
Confidence 5789999999999 3311 111111232222211 111 1233344433221 124678999999998533
Q ss_pred chhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhcC
Q 000823 709 DSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLF 788 (1267)
Q Consensus 709 ~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF 788 (1267)
...+.|.+.|+. |.+++||+||.... ..++.+|..|+
T Consensus 107 ~~q~~LL~~le~--~~iilI~att~n~~-----------------------------------------~~l~~aL~SR~ 143 (413)
T PRK13342 107 AQQDALLPHVED--GTITLIGATTENPS-----------------------------------------FEVNPALLSRA 143 (413)
T ss_pred HHHHHHHHHhhc--CcEEEEEeCCCChh-----------------------------------------hhccHHHhccc
Confidence 223445666654 89999999885431 01356677778
Q ss_pred CCeEEEcCCCHHHHHHHHHHhhhh
Q 000823 789 PNKVTIHMPQDEALLASWKHQLDR 812 (1267)
Q Consensus 789 ~~~IeI~LPdeE~Rl~IwK~qLe~ 812 (1267)
..+.+..|+.++...+++..+..
T Consensus 144 -~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 144 -QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred -eeeEeCCCCHHHHHHHHHHHHHH
Confidence 78999999999888888865543
No 399
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.96 E-value=0.03 Score=61.09 Aligned_cols=69 Identities=23% Similarity=0.357 Sum_probs=41.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeecccc----------chhccC----------ccHHHHHHHHHHHHh
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----------TSKWFG----------EGEKYVKAVFSLASK 1027 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL----------~s~~~G----------e~e~~v~~lF~~A~k 1027 (1267)
+-++|.||+|+|||+.+..+|..+ +..+--+++..+ +.+..| .....+.+.++.+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 568999999999999888888776 444433333211 011111 122334455666655
Q ss_pred cCCeEEEEccch
Q 000823 1028 IAPSVIFVDEVD 1039 (1267)
Q Consensus 1028 ~~PsIIfIDEID 1039 (1267)
....+||||-..
T Consensus 82 ~~~D~vlIDT~G 93 (196)
T PF00448_consen 82 KGYDLVLIDTAG 93 (196)
T ss_dssp TTSSEEEEEE-S
T ss_pred cCCCEEEEecCC
Confidence 556799999765
No 400
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=95.94 E-value=0.062 Score=71.11 Aligned_cols=174 Identities=18% Similarity=0.236 Sum_probs=99.4
Q ss_pred CceEEEEcCCCChHHHH-HHHHHHHhCCceEEeeccccchhccCccHHHHHHHHHHHHhc---------C-----CeEEE
Q 000823 970 CKGILLFGPPGTGKTML-AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI---------A-----PSVIF 1034 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~L-AkALA~elg~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~---------~-----PsIIf 1034 (1267)
.++++++||||+|||+| .-+|-.++...|+.++.+.-. .++..+..+-+..... + --|||
T Consensus 1494 ~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLF 1568 (3164)
T COG5245 1494 LRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLF 1568 (3164)
T ss_pred cceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHHHHhhceeeccCCeEEEccCcchhheEEE
Confidence 47999999999999995 557778887777777754321 1122222222211111 1 13999
Q ss_pred EccchhhhcCCCCCchH---HHHHHHHHhhhhhccCCccc------CCCcEEEEEecCCCCCCc-----HHHHhcccccc
Q 000823 1035 VDEVDSMLGRRENPGEH---EAMRKMKNEFMVNWDGLRTK------DTERILVLAATNRPFDLD-----EAVIRRLPRRL 1100 (1267)
Q Consensus 1035 IDEID~L~~~r~~~~~~---~~~~~il~eLL~~ldgl~~~------~~~~VlVIaTTN~p~~Ld-----~aLlrRFd~vI 1100 (1267)
.|||+ | +....-..+ -+++.++.. .|+... .-.++++.+++|.+.+.- +.++|+= ..+
T Consensus 1569 cDeIn-L-p~~~~y~~~~vI~FlR~l~e~-----QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~v 1640 (3164)
T COG5245 1569 CDEIN-L-PYGFEYYPPTVIVFLRPLVER-----QGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP-VFV 1640 (3164)
T ss_pred eeccC-C-ccccccCCCceEEeeHHHHHh-----cccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-eEE
Confidence 99998 3 322111111 122222211 111111 125799999999976443 5566543 557
Q ss_pred cCCCCCHHHHHHHHHHHHhhCCCCC-cc------------c-HHHH-------HHHcCCCCHHHHHHHHhhhhhHHH
Q 000823 1101 MVNLPDAPNRAKILQVILAKEDLSP-DV------------D-FDAI-------ANMTDGYSGSDLKVIFLSHSLICN 1156 (1267)
Q Consensus 1101 ~~~~Pd~eeR~eIL~~ll~k~~l~~-dv------------d-l~~L-------A~~TeGySg~DL~~Lv~~a~l~~~ 1156 (1267)
.+..|.......|.+.++...-+.- +. . +... -+..-||+|+||.+.+.+.-.++.
T Consensus 1641 f~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~yae 1717 (3164)
T COG5245 1641 FCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYAE 1717 (3164)
T ss_pred EecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHHh
Confidence 7889999999999998886532211 10 0 1111 122258999999977776544443
No 401
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.92 E-value=0.0069 Score=61.31 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceEEee
Q 000823 973 ILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~elg~~fi~I~ 1002 (1267)
|.|.|+||+|||++|+.||..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999988776
No 402
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.92 E-value=0.0068 Score=62.25 Aligned_cols=29 Identities=41% Similarity=0.704 Sum_probs=25.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceEEe
Q 000823 973 ILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~elg~~fi~I 1001 (1267)
++|+|+||+|||++|+.++..++..++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 68999999999999999999988766543
No 403
>PRK14531 adenylate kinase; Provisional
Probab=95.92 E-value=0.0078 Score=64.44 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEe
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I 1001 (1267)
..|+|+||||+|||++++.||..+|++++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3699999999999999999999998776543
No 404
>PRK09354 recA recombinase A; Provisional
Probab=95.91 E-value=0.037 Score=65.32 Aligned_cols=73 Identities=26% Similarity=0.329 Sum_probs=48.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccch------------h----ccCccHHHHHHHHHHHHhcCCe
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS------------K----WFGEGEKYVKAVFSLASKIAPS 1031 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s------------~----~~Ge~e~~v~~lF~~A~k~~Ps 1031 (1267)
.-++|+||+|+|||+|+-.++... |...++++...-.. + .....+..+..+-..++...+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 468899999999999999876544 77788887654111 0 0111233333333444556789
Q ss_pred EEEEccchhhhc
Q 000823 1032 VIFVDEVDSMLG 1043 (1267)
Q Consensus 1032 IIfIDEID~L~~ 1043 (1267)
+|+||-|-.|.+
T Consensus 141 lIVIDSvaaL~~ 152 (349)
T PRK09354 141 LIVVDSVAALVP 152 (349)
T ss_pred EEEEeChhhhcc
Confidence 999999999875
No 405
>PF13479 AAA_24: AAA domain
Probab=95.91 E-value=0.024 Score=62.40 Aligned_cols=69 Identities=23% Similarity=0.306 Sum_probs=38.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeecccc-chhc-----c-CccHHHHHHHHHHH--HhcCCeEEEEccchhh
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI-TSKW-----F-GEGEKYVKAVFSLA--SKIAPSVIFVDEVDSM 1041 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL-~s~~-----~-Ge~e~~v~~lF~~A--~k~~PsIIfIDEID~L 1041 (1267)
-.+||||+||+|||++|..+-+ .-|+.+..... +..+ + =.+-..+...+..+ ......+|+||.++.+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k---~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPK---PLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCC---eEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 5799999999999999988811 11222222210 0000 0 01222333444332 2446689999988876
Q ss_pred h
Q 000823 1042 L 1042 (1267)
Q Consensus 1042 ~ 1042 (1267)
.
T Consensus 81 ~ 81 (213)
T PF13479_consen 81 E 81 (213)
T ss_pred H
Confidence 3
No 406
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.91 E-value=0.0069 Score=64.57 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=25.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceEEe
Q 000823 973 ILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~elg~~fi~I 1001 (1267)
|+|+||||+|||++|+.||..+++.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998776554
No 407
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.90 E-value=0.0023 Score=70.80 Aligned_cols=130 Identities=17% Similarity=0.193 Sum_probs=61.2
Q ss_pred ecccCCCCCCCC-----CCCCCCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC
Q 000823 633 VRFDKPIPDGVD-----LGGQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN 707 (1267)
Q Consensus 633 v~Fd~~~~~~~~-----l~~~c~~~~~ff~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~l~g~ 707 (1267)
++|.+|||.||| +|+.+..... .++..+.+. ...|-.++.+.. ..-||||||||.+=.-.
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~~~~~--------~~sg~~i~k-----~~dl~~il~~l~--~~~ILFIDEIHRlnk~~ 117 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELGVNFK--------ITSGPAIEK-----AGDLAAILTNLK--EGDILFIDEIHRLNKAQ 117 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT--EE--------EEECCC--S-----CHHHHHHHHT----TT-EEEECTCCC--HHH
T ss_pred EEEECCCccchhHHHHHHHhccCCCeE--------eccchhhhh-----HHHHHHHHHhcC--CCcEEEEechhhccHHH
Confidence 799999999999 4455554321 112111110 011223333332 35599999999843233
Q ss_pred cchhhHHHHHHhcCCCcE-EEEeecccCCCccccCCCCCcc--ccccCCchhhhccccCCCccccccccCCCchhHHHHH
Q 000823 708 SDSYSTFKSRLEKLPDKV-IVIGSHTHTDNRKEKSHPGGLL--FTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLL 784 (1267)
Q Consensus 708 ~~~~~~lk~~L~~l~g~V-vvIGst~~~d~~~~~~~~~~~~--l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L 784 (1267)
+| .|-+.++. |.| +|||.....-...=.=.+++++ -+|.|- +...|
T Consensus 118 qe---~LlpamEd--~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~--------------------------ls~pL 166 (233)
T PF05496_consen 118 QE---ILLPAMED--GKIDIIIGKGPNARSIRINLPPFTLIGATTRAGL--------------------------LSSPL 166 (233)
T ss_dssp HH---HHHHHHHC--SEEEEEBSSSSS-BEEEEE----EEEEEESSGCC--------------------------TSHCC
T ss_pred HH---HHHHHhcc--CeEEEEeccccccceeeccCCCceEeeeeccccc--------------------------cchhH
Confidence 33 35677764 777 5666654322211110134443 444444 22333
Q ss_pred hhcCCCeEEEcCCCHHHHHHHHHH
Q 000823 785 TKLFPNKVTIHMPQDEALLASWKH 808 (1267)
Q Consensus 785 ~rrF~~~IeI~LPdeE~Rl~IwK~ 808 (1267)
-.||.....+..=+.++..+|.+.
T Consensus 167 rdRFgi~~~l~~Y~~~el~~Iv~r 190 (233)
T PF05496_consen 167 RDRFGIVLRLEFYSEEELAKIVKR 190 (233)
T ss_dssp CTTSSEEEE----THHHHHHHHHH
T ss_pred HhhcceecchhcCCHHHHHHHHHH
Confidence 445766666666677777777763
No 408
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.88 E-value=0.05 Score=64.83 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=56.7
Q ss_pred ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccch----h--
Q 000823 939 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----K-- 1009 (1267)
Q Consensus 939 Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s----~-- 1009 (1267)
+.+.+...+.+.+...+..+..+. ..+..-++|.||+|+|||+++..+|..+ +..+..+++..+.. .
T Consensus 179 ~~~~v~~~~~~~L~~~l~~~~~~~----~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk 254 (407)
T PRK12726 179 HLDDITDWFVPYLSGKLAVEDSFD----LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQ 254 (407)
T ss_pred cHHHHHHHHHHHhcCcEeeCCCce----ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHH
Confidence 345666666666655443332221 2344679999999999999999998766 54554454432210 0
Q ss_pred ----------ccCccHHHHHHHHHHHHh-cCCeEEEEccchhh
Q 000823 1010 ----------WFGEGEKYVKAVFSLASK-IAPSVIFVDEVDSM 1041 (1267)
Q Consensus 1010 ----------~~Ge~e~~v~~lF~~A~k-~~PsIIfIDEID~L 1041 (1267)
+....+..+......++. ....+||||=....
T Consensus 255 ~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 255 GYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRN 297 (407)
T ss_pred HHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 112233344444444432 23579999977543
No 409
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.86 E-value=0.043 Score=58.52 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=46.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhc-----------------cCccHHHHHHHHHHHHhcCCeEEEE
Q 000823 973 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW-----------------FGEGEKYVKAVFSLASKIAPSVIFV 1035 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~-----------------~Ge~e~~v~~lF~~A~k~~PsIIfI 1035 (1267)
+|+.|++|+|||++|..++...+.+++++....-.+.- ..+....+...+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 68999999999999999998877788877654322110 0111223333332211 4679999
Q ss_pred ccchhhhcCC
Q 000823 1036 DEVDSMLGRR 1045 (1267)
Q Consensus 1036 DEID~L~~~r 1045 (1267)
|-+..|...-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999887544
No 410
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=95.86 E-value=0.0055 Score=54.84 Aligned_cols=35 Identities=34% Similarity=0.680 Sum_probs=30.6
Q ss_pred cccCHHHHHHHHHHhcccccccccchhhhHHHHHhhC
Q 000823 1217 RPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYG 1253 (1267)
Q Consensus 1217 ~~Vt~eDf~~Al~~v~pS~s~~~~~~~~~v~W~di~G 1253 (1267)
.+|+++||.+|+++++||++.+.+ ..+.+|++.||
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~dl--~~ye~w~~~FG 62 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQEDL--KKYEEWTKEFG 62 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HHHH--HHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcC
Confidence 479999999999999999998854 56899999998
No 411
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.86 E-value=0.0068 Score=64.62 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeec
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1003 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~ 1003 (1267)
.+|+|.|++|+|||++.+++|+.++.+|+-.|.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 479999999999999999999999999987774
No 412
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.063 Score=64.31 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=45.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccc-------hhc---------cCccHHHHHHHHHHHHh-cC
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-------SKW---------FGEGEKYVKAVFSLASK-IA 1029 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~-------s~~---------~Ge~e~~v~~lF~~A~k-~~ 1029 (1267)
++.++|.||+|+|||+++..||..+ +..+..+++..+. ..| ....+..+......+.. ..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3679999999999999999999877 4455545542210 011 11234445555554443 24
Q ss_pred CeEEEEccchhh
Q 000823 1030 PSVIFVDEVDSM 1041 (1267)
Q Consensus 1030 PsIIfIDEID~L 1041 (1267)
..+||||-..+.
T Consensus 321 ~DvVLIDTaGRs 332 (436)
T PRK11889 321 VDYILIDTAGKN 332 (436)
T ss_pred CCEEEEeCcccc
Confidence 689999977643
No 413
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.83 E-value=0.0092 Score=62.62 Aligned_cols=59 Identities=24% Similarity=0.332 Sum_probs=35.6
Q ss_pred ccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---ceEEeecccc
Q 000823 937 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---NFINISMSSI 1006 (1267)
Q Consensus 937 I~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg~---~fi~I~~seL 1006 (1267)
++|-++..++|...+. .. ....+..++|+|++|+|||+|++++...+.. -++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~----------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AA----------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GT----------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HH----------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 3566777777777663 11 1223468999999999999999998877732 2777776554
No 414
>PRK14530 adenylate kinase; Provisional
Probab=95.81 E-value=0.0086 Score=65.69 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEe
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg~~fi~I 1001 (1267)
.|+|.||||+|||++|+.||+.++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 699999999999999999999999877644
No 415
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.81 E-value=0.025 Score=71.07 Aligned_cols=94 Identities=20% Similarity=0.230 Sum_probs=61.9
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CceEEeec-ccc
Q 000823 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSI 1006 (1267)
Q Consensus 931 ~vt~~DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~kP~~gVLL~GPpGTGKT~LAkALA~elg---~~fi~I~~-seL 1006 (1267)
..++++++-.....+.+++++.. +.+-||++||+|+|||++..++.+.++ .+++.+-- .++
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI 356 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee
Confidence 35778888888888888777642 334689999999999999988887773 33443221 122
Q ss_pred chh-----ccC-ccHHHHHHHHHHHHhcCCeEEEEccch
Q 000823 1007 TSK-----WFG-EGEKYVKAVFSLASKIAPSVIFVDEVD 1039 (1267)
Q Consensus 1007 ~s~-----~~G-e~e~~v~~lF~~A~k~~PsIIfIDEID 1039 (1267)
.-. .+. ........++..+-+..|.||+|.||-
T Consensus 357 ~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 357 NLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred cCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 100 011 111234556677778899999999995
No 416
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.79 E-value=0.045 Score=60.06 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---C------CceEEeeccc
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA---G------ANFINISMSS 1005 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el---g------~~fi~I~~se 1005 (1267)
+..-+.|+||||+|||+++..+|... + ..+++++..+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 44568999999999999999998654 3 6677777643
No 417
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.78 E-value=0.0075 Score=62.60 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=29.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEee
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~ 1002 (1267)
.+||++|-||||||+++.+||..++++++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 38999999999999999999999999988765
No 418
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.77 E-value=0.1 Score=58.66 Aligned_cols=132 Identities=11% Similarity=0.057 Sum_probs=89.8
Q ss_pred CceEEEEcCCC-ChHHHHHHHHHHHhCCc---------eEEeeccccc---hhccCccHHHHHHHHHHHHhc----CCeE
Q 000823 970 CKGILLFGPPG-TGKTMLAKAVATEAGAN---------FINISMSSIT---SKWFGEGEKYVKAVFSLASKI----APSV 1032 (1267)
Q Consensus 970 ~~gVLL~GPpG-TGKT~LAkALA~elg~~---------fi~I~~seL~---s~~~Ge~e~~v~~lF~~A~k~----~PsI 1032 (1267)
...+||.|..+ +||..++..++..+-.. +..+....-. ++. -.-..++.+-..+... ...|
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~--I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKN--ISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCc--ccHHHHHHHHHHHhhCcccCCcEE
Confidence 36799999998 99999999988877332 2222211000 011 1233455555554433 3569
Q ss_pred EEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHH
Q 000823 1033 IFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAK 1112 (1267)
Q Consensus 1033 IfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~~~Pd~eeR~e 1112 (1267)
++|+++|.|- ....|.||..++. ++.++++|..|..+..+.+.+++|+ ..+.|+.|....-.+
T Consensus 93 iII~~ae~mt------------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 93 AIIYSAELMN------------LNAANSCLKILED----APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNE 155 (263)
T ss_pred EEEechHHhC------------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHH
Confidence 9999999883 3344556655555 3567888888888999999999999 789999999887777
Q ss_pred HHHHHHhh
Q 000823 1113 ILQVILAK 1120 (1267)
Q Consensus 1113 IL~~ll~k 1120 (1267)
+....+..
T Consensus 156 ~~~~~~~p 163 (263)
T PRK06581 156 LYSQFIQP 163 (263)
T ss_pred HHHHhccc
Confidence 77666543
No 419
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.75 E-value=0.021 Score=64.57 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGA 996 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~ 996 (1267)
..++|+||+|+|||+|++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 47999999999999999999988743
No 420
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.74 E-value=0.011 Score=63.51 Aligned_cols=33 Identities=39% Similarity=0.743 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEeecccc
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1006 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL 1006 (1267)
.|+|.||||+||||+|+.||+. +++..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHH
Confidence 5899999999999999999999 45555665444
No 421
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.73 E-value=0.064 Score=65.20 Aligned_cols=26 Identities=31% Similarity=0.591 Sum_probs=23.8
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhC
Q 000823 466 NPRILLSGPAGSEIYQEMLAKALAHYFG 493 (1267)
Q Consensus 466 ~~rILLsgp~GsE~Yqe~LaKALA~~f~ 493 (1267)
.+-|+|+|||| ..+.+|||+||+.+.
T Consensus 194 ~~~iil~GppG--tGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPG--VGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCC--CCHHHHHHHHHHHhc
Confidence 56899999999 899999999999875
No 422
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.73 E-value=0.072 Score=59.04 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCceEEeec
Q 000823 968 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 1003 (1267)
Q Consensus 968 kP~~gVLL~GPpGTGKT~LAkALA~el----g~~fi~I~~ 1003 (1267)
.+..-++|.|+||+|||+++..++... +.+++.+++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 344568999999999999999887654 778877775
No 423
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.71 E-value=0.0081 Score=62.63 Aligned_cols=29 Identities=41% Similarity=0.693 Sum_probs=25.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceEEe
Q 000823 973 ILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~elg~~fi~I 1001 (1267)
|+|.||+|+|||++|+.+++.++..++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~ 29 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEG 29 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 57899999999999999999998766543
No 424
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=95.70 E-value=0.056 Score=63.97 Aligned_cols=28 Identities=39% Similarity=0.624 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000823 967 TKPCKGILLFGPPGTGKTMLAKAVATEA 994 (1267)
Q Consensus 967 ~kP~~gVLL~GPpGTGKT~LAkALA~el 994 (1267)
..|++|++|||.-|||||+|.-..-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 5678999999999999999998776444
No 425
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.69 E-value=0.036 Score=61.12 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCceEEeeccc
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 1005 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el---------g~~fi~I~~se 1005 (1267)
+..-+.|+||||+|||+++..++... +..+++++..+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 33568999999999999999997543 25677777644
No 426
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.69 E-value=0.047 Score=59.66 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000823 972 GILLFGPPGTGKTMLAKAVATEA 994 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~el 994 (1267)
=++|+|+||+|||++|+.+|+++
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 48999999999999999999999
No 427
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.69 E-value=0.017 Score=66.91 Aligned_cols=69 Identities=26% Similarity=0.375 Sum_probs=46.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCceEEeec-cccc-------hhccCccHHHHHHHHHHHHhcCCeEEEEcc
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISM-SSIT-------SKWFGEGEKYVKAVFSLASKIAPSVIFVDE 1037 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el-----g~~fi~I~~-seL~-------s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDE 1037 (1267)
+++|+.||+|+|||+++++++..+ +..++.+.- .++. .-..+........++..+-+..|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 589999999999999999999886 233333321 1211 101111122466788888899999999999
Q ss_pred ch
Q 000823 1038 VD 1039 (1267)
Q Consensus 1038 ID 1039 (1267)
|-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 94
No 428
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.68 E-value=0.02 Score=68.27 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=46.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CceEEeecc-ccc-----------hhccCccHHHHHHHHHHHHhcCCeEE
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-----------SKWFGEGEKYVKAVFSLASKIAPSVI 1033 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg-----~~fi~I~~s-eL~-----------s~~~Ge~e~~v~~lF~~A~k~~PsII 1033 (1267)
+.+|++||+|+|||+++++++.... ..++.+.-+ ++. ..-+|............+-+..|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 4689999999999999999988762 345544321 221 01122222234556677778899999
Q ss_pred EEccch
Q 000823 1034 FVDEVD 1039 (1267)
Q Consensus 1034 fIDEID 1039 (1267)
+|.|+-
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999995
No 429
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.68 E-value=0.054 Score=56.15 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=18.9
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHHh
Q 000823 971 KGILLFGPPGTGKTM-LAKAVATEA 994 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~-LAkALA~el 994 (1267)
..+++.||+|+|||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 479999999999999 555555554
No 430
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.67 E-value=0.011 Score=62.03 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=29.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEee
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~ 1002 (1267)
..++|.|++|+|||++++.+|..++++|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 36899999999999999999999999988665
No 431
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.66 E-value=0.031 Score=65.73 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=47.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CceEEe-eccccch-----------hc--cCccHHHHHHHHHHHHhcCCeEEE
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAG--ANFINI-SMSSITS-----------KW--FGEGEKYVKAVFSLASKIAPSVIF 1034 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg--~~fi~I-~~seL~s-----------~~--~Ge~e~~v~~lF~~A~k~~PsIIf 1034 (1267)
+++|++|++|+|||+++++++.... ..++.+ +..++.- .. .|...-....++..+-+..|.+|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 5899999999999999999998873 233332 1112210 00 111222456788888899999999
Q ss_pred Eccch
Q 000823 1035 VDEVD 1039 (1267)
Q Consensus 1035 IDEID 1039 (1267)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99995
No 432
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.65 E-value=0.12 Score=62.61 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=46.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccc----------hh-----cc----C-ccHHHHHHHHHHH
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------SK-----WF----G-EGEKYVKAVFSLA 1025 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~----------s~-----~~----G-e~e~~v~~lF~~A 1025 (1267)
++.-++|+|++|+|||+++..||..+ |..+.-+++..+. .. ++ + .+.......+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999877 6666666653221 00 01 1 1122334455566
Q ss_pred HhcCCeEEEEccchh
Q 000823 1026 SKIAPSVIFVDEVDS 1040 (1267)
Q Consensus 1026 ~k~~PsIIfIDEID~ 1040 (1267)
+.....+||||=..+
T Consensus 179 ~~~~~DvViIDTaGr 193 (429)
T TIGR01425 179 KKENFDIIIVDTSGR 193 (429)
T ss_pred HhCCCCEEEEECCCC
Confidence 655678999997653
No 433
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.63 E-value=0.011 Score=65.91 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=28.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEee
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~ 1002 (1267)
..|+|.||||+|||++|+.||+.++++++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 45999999999999999999999998776554
No 434
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.61 E-value=0.12 Score=58.18 Aligned_cols=132 Identities=15% Similarity=0.200 Sum_probs=74.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC--CceEEeeccccchhc--------c-C-----ccHHHHHH----HHHHHH--
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKW--------F-G-----EGEKYVKA----VFSLAS-- 1026 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~elg--~~fi~I~~seL~s~~--------~-G-----e~e~~v~~----lF~~A~-- 1026 (1267)
.+-.+.+.|++|+|||+++..|...+. +..+.+-++.....+ + . +.+..+.. +-..+.
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 345899999999999999999987773 233333332211111 0 0 00111111 111111
Q ss_pred -h---cCCeEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccC
Q 000823 1027 -K---IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMV 1102 (1267)
Q Consensus 1027 -k---~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~~ 1102 (1267)
. .++.+|+||++..- ..-...+..++. ..+ .-++.+|..+.....+++.++.-.+.++.+
T Consensus 92 ~~~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~---~gR---H~~is~i~l~Q~~~~lp~~iR~n~~y~i~~ 155 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK----------KLKSKILRQFFN---NGR---HYNISIIFLSQSYFHLPPNIRSNIDYFIIF 155 (241)
T ss_pred cccCCCCCeEEEEeCCCCc----------hhhhHHHHHHHh---ccc---ccceEEEEEeeecccCCHHHhhcceEEEEe
Confidence 1 23679999997420 011223333332 222 246888888888899999998877766666
Q ss_pred CCCCHHHHHHHHHHH
Q 000823 1103 NLPDAPNRAKILQVI 1117 (1267)
Q Consensus 1103 ~~Pd~eeR~eIL~~l 1117 (1267)
+ -+..++..|++.+
T Consensus 156 ~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 156 N-NSKRDLENIYRNM 169 (241)
T ss_pred c-CcHHHHHHHHHhc
Confidence 5 4666665555544
No 435
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.60 E-value=0.096 Score=59.50 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeecc
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1004 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~s 1004 (1267)
+..-+|++||||+|||+++..+|... |-++++++..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 44568999999999999999887643 5566666643
No 436
>PRK13764 ATPase; Provisional
Probab=95.60 E-value=0.02 Score=71.97 Aligned_cols=68 Identities=22% Similarity=0.355 Sum_probs=41.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CceEEee-cccc-----chhccCccHHHHHHHHHHHHhcCCeEEEEccch
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSI-----TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVD 1039 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg---~~fi~I~-~seL-----~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID 1039 (1267)
.++|++||||+|||+++++++..+. ..+..+. ..++ ...+. ............+-+..|.+|++||+-
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCC
Confidence 5899999999999999999998873 3332321 1122 11111 000111223333356789999999995
No 437
>PRK08233 hypothetical protein; Provisional
Probab=95.58 E-value=0.063 Score=56.51 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CceEEeec
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAG-ANFINISM 1003 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg-~~fi~I~~ 1003 (1267)
.-|.|.|+||+||||+|+.|+..++ ..++.++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 4578899999999999999999985 44544443
No 438
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.57 E-value=0.042 Score=64.67 Aligned_cols=93 Identities=14% Similarity=0.187 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEcchhhhhcCCcchhhHHHHH--HhcCC-CcEEEEeecccCCCccccCCCCCccccccCC
Q 000823 677 INTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSR--LEKLP-DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGS 753 (1267)
Q Consensus 677 i~~L~ev~~~~~~~~p~ILfi~di~~~l~g~~~~~~~lk~~--L~~l~-g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr 753 (1267)
++.+++.+.. ...++||+|||+|.+.....++...|... ....+ .+|.+|+.+|..+..
T Consensus 117 ~~~l~~~l~~--~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~---------------- 178 (365)
T TIGR02928 117 FRRLYKELNE--RGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFR---------------- 178 (365)
T ss_pred HHHHHHHHHh--cCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchH----------------
Confidence 4444444432 35689999999999875434432222222 12233 689999999876520
Q ss_pred chhhhccccCCCccccccccCCCchhHHHHHhhcC-CCeEEEcCCCHHHHHHHHHHhhh
Q 000823 754 NQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLF-PNKVTIHMPQDEALLASWKHQLD 811 (1267)
Q Consensus 754 ~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF-~~~IeI~LPdeE~Rl~IwK~qLe 811 (1267)
.+ ++..+..+| +..|.+++++.++..+|++..++
T Consensus 179 --------------~~----------l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 179 --------------EN----------LDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred --------------hh----------cCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 01 234455556 36799999999999999997664
No 439
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.55 E-value=0.011 Score=62.60 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=29.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeecc
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1004 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~s 1004 (1267)
+-++|.|+||+|||++|++++..++..++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 4689999999999999999999998777765543
No 440
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.53 E-value=0.013 Score=70.39 Aligned_cols=82 Identities=15% Similarity=0.261 Sum_probs=60.8
Q ss_pred Cccccccccccccccc-hhHHHHHHHHHhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEE
Q 000823 420 GTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 498 (1267)
Q Consensus 420 ~~~~~vsfd~FPYyls-e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~ 498 (1267)
|++|.-.++. |.+. +..|..|..|+|-|.+...+..-.+ -.-..+.|||.||+| ..+.+|||+||+.++++++.
T Consensus 6 p~~I~~~Ld~--~IiGQe~AkkalavAl~~~~~r~~l~~~~~-~e~~~~~ILliGp~G--~GKT~LAr~LAk~l~~~fi~ 80 (443)
T PRK05201 6 PREIVSELDK--YIIGQDDAKRAVAIALRNRWRRMQLPEELR-DEVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIK 80 (443)
T ss_pred HHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHHhcCCcccc-cccCCceEEEECCCC--CCHHHHHHHHHHHhCChhee
Confidence 3444444444 2333 8899999999999977655432211 111247899999999 89999999999999999999
Q ss_pred EeccccCC
Q 000823 499 FDSHSLLG 506 (1267)
Q Consensus 499 ~D~~~~~~ 506 (1267)
+|.+.|..
T Consensus 81 vD~t~f~e 88 (443)
T PRK05201 81 VEATKFTE 88 (443)
T ss_pred ecchhhcc
Confidence 99988863
No 441
>PRK14528 adenylate kinase; Provisional
Probab=95.51 E-value=0.014 Score=62.96 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEe
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I 1001 (1267)
+.++|.||||+|||++|+.+|..++++++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4699999999999999999999999876553
No 442
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.51 E-value=0.029 Score=60.24 Aligned_cols=69 Identities=32% Similarity=0.482 Sum_probs=45.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CceEEeec-cccch---hc----------cCccHHHHHHHHHHHHhcCCeEEE
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISM-SSITS---KW----------FGEGEKYVKAVFSLASKIAPSVIF 1034 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg--~~fi~I~~-seL~s---~~----------~Ge~e~~v~~lF~~A~k~~PsIIf 1034 (1267)
..++|.||+|+|||+++++++..+. ...+.+.. .++.. .+ .+........++..+.+..|.+|+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 5799999999999999999998762 22222211 11100 00 011123456677777888899999
Q ss_pred Eccch
Q 000823 1035 VDEVD 1039 (1267)
Q Consensus 1035 IDEID 1039 (1267)
+.||-
T Consensus 106 igEir 110 (186)
T cd01130 106 VGEVR 110 (186)
T ss_pred EEccC
Confidence 99994
No 443
>PRK06547 hypothetical protein; Provisional
Probab=95.51 E-value=0.014 Score=62.37 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceEEee
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~ 1002 (1267)
++.-|+|.|++|+|||++|+.|++.++..++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3467899999999999999999999988777554
No 444
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.50 E-value=0.093 Score=57.93 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 000823 971 KGILLFGPPGTGKTMLAKAVAT 992 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~ 992 (1267)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 445
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.49 E-value=0.048 Score=61.25 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCceEEeecccc
Q 000823 973 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1006 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL 1006 (1267)
|+|+|+||+|||++|++++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999988 566777765433
No 446
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.48 E-value=0.014 Score=62.02 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=30.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeec
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1003 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~ 1003 (1267)
..|+|.||+|+|||++++.+|..++++++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 479999999999999999999999999887764
No 447
>PRK13946 shikimate kinase; Provisional
Probab=95.46 E-value=0.013 Score=62.94 Aligned_cols=33 Identities=27% Similarity=0.545 Sum_probs=30.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeec
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1003 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~ 1003 (1267)
..|+|.|.+|+|||++++.||+.+|++|+..+.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 579999999999999999999999999987763
No 448
>PRK02496 adk adenylate kinase; Provisional
Probab=95.45 E-value=0.014 Score=62.26 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEe
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg~~fi~I 1001 (1267)
.++|.||||+|||++|+.||..++++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 589999999999999999999998776554
No 449
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.42 E-value=0.014 Score=61.73 Aligned_cols=30 Identities=27% Similarity=0.519 Sum_probs=26.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1000 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~ 1000 (1267)
.-++|.||||+|||++++.|+..+|+..+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 368999999999999999999999866543
No 450
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.42 E-value=0.17 Score=55.32 Aligned_cols=53 Identities=17% Similarity=0.075 Sum_probs=37.7
Q ss_pred cccccccccccchhHHHHHHHHHhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhC
Q 000823 424 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG 493 (1267)
Q Consensus 424 ~vsfd~FPYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~ 493 (1267)
.-|||+|=+.-.+++...|...+. ....+-|||.||+| ..+..||+++|++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~lll~G~~G--~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA---------------GKGDRFLYLWGESG--SGKSHLLQAACAAAE 63 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh---------------cCCCCeEEEECCCC--CCHHHHHHHHHHHHH
Confidence 467888753344556666655432 12346799999999 899999999999863
No 451
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.36 E-value=0.056 Score=57.45 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA 994 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el 994 (1267)
+.-.++|.||+||||++|.|++|...
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 44579999999999999999999755
No 452
>PRK04328 hypothetical protein; Provisional
Probab=95.36 E-value=0.14 Score=57.82 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=26.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeec
Q 000823 968 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1003 (1267)
Q Consensus 968 kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~ 1003 (1267)
.+...+||+||||+|||.|+..++.+. |-+.+.++.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 344679999999999999998876542 555555544
No 453
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.35 E-value=0.044 Score=63.85 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=32.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEee
Q 000823 967 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1267)
Q Consensus 967 ~kP~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~ 1002 (1267)
..+...|+|.|++|+|||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 445578999999999999999999999999999655
No 454
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.34 E-value=0.043 Score=57.03 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=28.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCceEEeecccc
Q 000823 973 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1006 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL 1006 (1267)
++|+|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999998 667777765433
No 455
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.30 E-value=0.071 Score=68.90 Aligned_cols=101 Identities=21% Similarity=0.279 Sum_probs=58.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---C--CceEEeecc----ccchhccCccHHHHHHHHHHHH----------hcCCeE
Q 000823 972 GILLFGPPGTGKTMLAKAVATEA---G--ANFINISMS----SITSKWFGEGEKYVKAVFSLAS----------KIAPSV 1032 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~el---g--~~fi~I~~s----eL~s~~~Ge~e~~v~~lF~~A~----------k~~PsI 1032 (1267)
-++|.|+||||||++++++...+ + ..++-+... .-+....|.....+..++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 68999999999999999997665 3 344433322 1122223433344555443211 124579
Q ss_pred EEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCc
Q 000823 1033 IFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1089 (1267)
Q Consensus 1033 IfIDEID~L~~~r~~~~~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld 1089 (1267)
|+|||+..+- ..++..|+..+ . .+.++++++=.+....+.
T Consensus 420 lIvDEaSMvd------------~~~~~~Ll~~~---~--~~~rlilvGD~~QLpsV~ 459 (720)
T TIGR01448 420 LIVDESSMMD------------TWLALSLLAAL---P--DHARLLLVGDTDQLPSVG 459 (720)
T ss_pred EEEeccccCC------------HHHHHHHHHhC---C--CCCEEEEECccccccCCC
Confidence 9999998662 22333343322 2 256788888777654444
No 456
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.30 E-value=0.29 Score=56.21 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeec
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1003 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~ 1003 (1267)
+++-++|.||+|+|||+++..+|..+ +..+.-+++
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 44678899999999999999998776 555655554
No 457
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.29 E-value=0.015 Score=63.55 Aligned_cols=29 Identities=41% Similarity=0.748 Sum_probs=25.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceEEe
Q 000823 973 ILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~elg~~fi~I 1001 (1267)
|+|+||||+|||++|+.||..+++..+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998766553
No 458
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.28 E-value=0.017 Score=63.32 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEe
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg~~fi~I 1001 (1267)
.|+++||||+|||++|+.||..+++..+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999766654
No 459
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.28 E-value=0.7 Score=54.02 Aligned_cols=116 Identities=17% Similarity=0.210 Sum_probs=63.9
Q ss_pred CCeEEEEccchhhhcCCCC-----CchHHHHHHHHHhhhhhccCCcccCCCcEE-EEEecCC---CC--CCcHHHHhccc
Q 000823 1029 APSVIFVDEVDSMLGRREN-----PGEHEAMRKMKNEFMVNWDGLRTKDTERIL-VLAATNR---PF--DLDEAVIRRLP 1097 (1267)
Q Consensus 1029 ~PsIIfIDEID~L~~~r~~-----~~~~~~~~~il~eLL~~ldgl~~~~~~~Vl-VIaTTN~---p~--~Ld~aLlrRFd 1097 (1267)
.|.++-||++..|+....- ..-+...-.+...|+..+.+-..-.++.++ .+++|.. +. .++.++..+=.
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 4678889999999965211 011222234455555554433322233332 2555433 22 44444443221
Q ss_pred ---------------------ccccCCCCCHHHHHHHHHHHHhhCCCCC----cccHHHHHHHcCCCCHHHHH
Q 000823 1098 ---------------------RRLMVNLPDAPNRAKILQVILAKEDLSP----DVDFDAIANMTDGYSGSDLK 1145 (1267)
Q Consensus 1098 ---------------------~vI~~~~Pd~eeR~eIL~~ll~k~~l~~----dvdl~~LA~~TeGySg~DL~ 1145 (1267)
..|.++..+.+|-..+++.+....-+.. ..-.+.+.-.+.| .++++.
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~G-Np~el~ 307 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNG-NPRELE 307 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCC-CHHHhc
Confidence 2678889999999999999887654432 2223444444455 777765
No 460
>PLN02200 adenylate kinase family protein
Probab=95.26 E-value=0.019 Score=64.29 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=31.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccch
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s 1008 (1267)
.+.-|+|.||||+|||++|+.||..+|+. .+++.+++.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 34578999999999999999999999865 566666654
No 461
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.21 E-value=0.14 Score=54.97 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 000823 973 ILLFGPPGTGKTMLAKAVA 991 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA 991 (1267)
++|+||.|+|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 462
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.20 E-value=0.016 Score=60.98 Aligned_cols=28 Identities=36% Similarity=0.676 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceEE
Q 000823 973 ILLFGPPGTGKTMLAKAVATEAGANFIN 1000 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~elg~~fi~ 1000 (1267)
|-+.||||||||++|+.||..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999875
No 463
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.068 Score=65.55 Aligned_cols=72 Identities=10% Similarity=0.110 Sum_probs=53.9
Q ss_pred CCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 000823 690 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 769 (1267)
Q Consensus 690 ~~p~ILfi~di~~~l~g~~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r 769 (1267)
...-|++|||+|.+ +.++.+.|-..|+.-++++++|.+||....
T Consensus 120 g~~KV~IIDEah~L---s~~A~NALLKtLEEPp~~viFILaTte~~k--------------------------------- 163 (484)
T PRK14956 120 GKYKVYIIDEVHML---TDQSFNALLKTLEEPPAHIVFILATTEFHK--------------------------------- 163 (484)
T ss_pred CCCEEEEEechhhc---CHHHHHHHHHHhhcCCCceEEEeecCChhh---------------------------------
Confidence 35569999999985 456777888888888899999999997542
Q ss_pred ccccCCCchhHHHHHhhcCCCeEEEcCCCHHHHHHHHHH
Q 000823 770 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKH 808 (1267)
Q Consensus 770 ~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~Rl~IwK~ 808 (1267)
+...|..|. +.+.+..+..+.-.+.++.
T Consensus 164 ----------I~~TI~SRC-q~~~f~~ls~~~i~~~L~~ 191 (484)
T PRK14956 164 ----------IPETILSRC-QDFIFKKVPLSVLQDYSEK 191 (484)
T ss_pred ----------ccHHHHhhh-heeeecCCCHHHHHHHHHH
Confidence 344566667 7888988887765555553
No 464
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.19 E-value=0.015 Score=57.16 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 000823 973 ILLFGPPGTGKTMLAKAVATEA 994 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~el 994 (1267)
|+|.|+||+|||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 465
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.16 E-value=0.13 Score=55.78 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.6
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 000823 971 KGILLFGPPGTGKTMLAKAVA 991 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA 991 (1267)
+.++|.||.|+|||+|.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999988
No 466
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.16 E-value=0.27 Score=57.70 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeec
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1003 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~ 1003 (1267)
++.-++|.||+|+|||+++..+|..+ +..+.-+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34678999999999999999999877 455555544
No 467
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.15 E-value=0.12 Score=56.25 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 000823 971 KGILLFGPPGTGKTMLAKAVA 991 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA 991 (1267)
..++|+||.|+|||++.+.|+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 569999999999999999998
No 468
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.14 E-value=0.049 Score=64.46 Aligned_cols=23 Identities=52% Similarity=0.642 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000823 972 GILLFGPPGTGKTMLAKAVATEA 994 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~el 994 (1267)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 469
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.14 E-value=0.092 Score=55.99 Aligned_cols=74 Identities=22% Similarity=0.392 Sum_probs=42.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-------------CCceEEeeccccc----hh---ccCc-----------------
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA-------------GANFINISMSSIT----SK---WFGE----------------- 1013 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el-------------g~~fi~I~~seL~----s~---~~Ge----------------- 1013 (1267)
.-++|+||+|+|||+++..++..+ +.+++.++...-. .. ..+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 112 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGC 112 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccccc
Confidence 358999999999999999887655 2356666653210 00 0000
Q ss_pred ------------cHHHHHHHHHHHHh-cCCeEEEEccchhhhcC
Q 000823 1014 ------------GEKYVKAVFSLASK-IAPSVIFVDEVDSMLGR 1044 (1267)
Q Consensus 1014 ------------~e~~v~~lF~~A~k-~~PsIIfIDEID~L~~~ 1044 (1267)
....+..+...+.. ..+.+|+||.+..+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 113 IRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp E---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 12233455666666 57899999999999865
No 470
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.13 E-value=0.068 Score=56.37 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCceEEeecc
Q 000823 972 GILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1004 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~s 1004 (1267)
-+++.||||+|||++++.+|..+ +..+..+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 37899999999999999998776 6667666654
No 471
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.10 E-value=0.2 Score=55.25 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeecc
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1004 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~s 1004 (1267)
+..-++|.|+||+|||+++..++... +-++++++..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34678999999999999999887543 6677666653
No 472
>PRK10867 signal recognition particle protein; Provisional
Probab=95.08 E-value=0.16 Score=61.94 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=47.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCceEEeeccccch----------hc-----c-----CccHHHHHHHHHH
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITS----------KW-----F-----GEGEKYVKAVFSL 1024 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el----g~~fi~I~~seL~s----------~~-----~-----Ge~e~~v~~lF~~ 1024 (1267)
++.-++++||+|+|||+++..+|..+ |..+..+++..+.. .. + ..+..........
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 45779999999999999888887655 56666666532211 00 1 1223344456666
Q ss_pred HHhcCCeEEEEccchhh
Q 000823 1025 ASKIAPSVIFVDEVDSM 1041 (1267)
Q Consensus 1025 A~k~~PsIIfIDEID~L 1041 (1267)
++.....+|+||=..++
T Consensus 179 a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 179 AKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHhcCCCEEEEeCCCCc
Confidence 66667789999977644
No 473
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.08 E-value=0.033 Score=64.83 Aligned_cols=69 Identities=25% Similarity=0.392 Sum_probs=45.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CceEEee-ccccch---hc---------cCccHHHHHHHHHHHHhcCCeEEEE
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAG--ANFINIS-MSSITS---KW---------FGEGEKYVKAVFSLASKIAPSVIFV 1035 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg--~~fi~I~-~seL~s---~~---------~Ge~e~~v~~lF~~A~k~~PsIIfI 1035 (1267)
.+++|.||+|+|||+++++++..+. ..++.+. ..++.- .+ .+...-....++..+.+..|.+|++
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii~ 224 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRIIL 224 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEEE
Confidence 6899999999999999999998772 2222221 111100 00 0111223566777788899999999
Q ss_pred ccch
Q 000823 1036 DEVD 1039 (1267)
Q Consensus 1036 DEID 1039 (1267)
||+-
T Consensus 225 gE~r 228 (308)
T TIGR02788 225 GELR 228 (308)
T ss_pred eccC
Confidence 9995
No 474
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.02 E-value=0.039 Score=60.40 Aligned_cols=111 Identities=18% Similarity=0.288 Sum_probs=58.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCch
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1050 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~ 1050 (1267)
.-++|.|+.|+|||+..+.|+.+.-. +. +. . ... ......+ .. --||.|||++.+. + ..
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~~~-----d~--~~-~-~~~-kd~~~~l---~~---~~iveldEl~~~~-k----~~ 111 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEYFS-----DS--IN-D-FDD-KDFLEQL---QG---KWIVELDELDGLS-K----KD 111 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHhcc-----Cc--cc-c-CCC-cHHHHHH---HH---hHheeHHHHhhcc-h----hh
Confidence 46889999999999999999766211 10 00 0 000 1111111 11 1488999999773 1 12
Q ss_pred HHHHHHHHHhhhhhccCCc----ccCCCcEEEEEecCCCCCCcH-HHHhcccccccCC
Q 000823 1051 HEAMRKMKNEFMVNWDGLR----TKDTERILVLAATNRPFDLDE-AVIRRLPRRLMVN 1103 (1267)
Q Consensus 1051 ~~~~~~il~eLL~~ldgl~----~~~~~~VlVIaTTN~p~~Ld~-aLlrRFd~vI~~~ 1103 (1267)
.+.+..++..-...++... ..-++..++|+|||..+-|.. .=-||| ..|.+.
T Consensus 112 ~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~ 168 (198)
T PF05272_consen 112 VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVS 168 (198)
T ss_pred HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEc
Confidence 2333333322222222111 112457789999999875543 445687 444443
No 475
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.01 E-value=0.038 Score=64.76 Aligned_cols=69 Identities=25% Similarity=0.364 Sum_probs=46.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCceEEee-ccccch------hccCccHHHHHHHHHHHHhcCCeEEEEccc
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFINIS-MSSITS------KWFGEGEKYVKAVFSLASKIAPSVIFVDEV 1038 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el-----g~~fi~I~-~seL~s------~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEI 1038 (1267)
.++|+.|++|+|||+++++++... +..++.+- ..++.- .+.....-....++..+-+..|..|++.||
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 579999999999999999999876 22333322 222211 011111223566778888899999999999
Q ss_pred h
Q 000823 1039 D 1039 (1267)
Q Consensus 1039 D 1039 (1267)
-
T Consensus 225 R 225 (323)
T PRK13833 225 R 225 (323)
T ss_pred C
Confidence 4
No 476
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.00 E-value=0.031 Score=66.11 Aligned_cols=69 Identities=23% Similarity=0.413 Sum_probs=46.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--ceEEee-ccccch------------hccCccHHHHHHHHHHHHhcCCeEEEE
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGA--NFINIS-MSSITS------------KWFGEGEKYVKAVFSLASKIAPSVIFV 1035 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~--~fi~I~-~seL~s------------~~~Ge~e~~v~~lF~~A~k~~PsIIfI 1035 (1267)
+++|+.||+|+|||+++++++..... .++.+. ..++.- ...|...-....++..+.+..|..|++
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Iiv 242 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILL 242 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEEE
Confidence 68999999999999999999987732 233221 111110 001111223566888888899999999
Q ss_pred ccch
Q 000823 1036 DEVD 1039 (1267)
Q Consensus 1036 DEID 1039 (1267)
.|+-
T Consensus 243 GEiR 246 (344)
T PRK13851 243 GEMR 246 (344)
T ss_pred EeeC
Confidence 9994
No 477
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.00 E-value=0.064 Score=48.56 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=23.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh-CCceEEee
Q 000823 973 ILLFGPPGTGKTMLAKAVATEA-GANFINIS 1002 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~el-g~~fi~I~ 1002 (1267)
+.|.|++|+|||++++++++.+ +.++..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 6789999999999999999996 34444443
No 478
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.00 E-value=0.11 Score=61.76 Aligned_cols=94 Identities=19% Similarity=0.279 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhhccCCCeEEEEcchhhhh-c-CCcchhhHHHHHHhcCCC-cEEEEeecccCCCccccCCCCCcccccc
Q 000823 675 LLINTLFEVVFSESRSCPFILFMKDAEKSI-A-GNSDSYSTFKSRLEKLPD-KVIVIGSHTHTDNRKEKSHPGGLLFTKF 751 (1267)
Q Consensus 675 ~~i~~L~ev~~~~~~~~p~ILfi~di~~~l-~-g~~~~~~~lk~~L~~l~g-~VvvIGst~~~d~~~~~~~~~~~~l~r~ 751 (1267)
.+++.+.+.+.+ +..++||+|||+|.+. . +...++..+ ..+..+.+ +|.+|+..+..+-
T Consensus 124 ~~~~~~~~~l~~--~~~~~viviDE~d~l~~~~~~~~l~~l~-~~~~~~~~~~v~vI~i~~~~~~--------------- 185 (394)
T PRK00411 124 ELFDKIAEYLDE--RDRVLIVALDDINYLFEKEGNDVLYSLL-RAHEEYPGARIGVIGISSDLTF--------------- 185 (394)
T ss_pred HHHHHHHHHHHh--cCCEEEEEECCHhHhhccCCchHHHHHH-HhhhccCCCeEEEEEEECCcch---------------
Confidence 355555555554 3568999999999977 2 233344433 34444555 7888888775541
Q ss_pred CCchhhhccccCCCccccccccCCCchhHHHHHhhcC-CCeEEEcCCCHHHHHHHHHHhhh
Q 000823 752 GSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLF-PNKVTIHMPQDEALLASWKHQLD 811 (1267)
Q Consensus 752 gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF-~~~IeI~LPdeE~Rl~IwK~qLe 811 (1267)
.+ + .+..+..+| +..|.+++++.++..+||+..++
T Consensus 186 -------~~--------~----------l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 186 -------LY--------I----------LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred -------hh--------h----------cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 00 0 122233334 46789999999999999986653
No 479
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.99 E-value=0.095 Score=60.31 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=27.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----C-CceEEeeccc
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSS 1005 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~el----g-~~fi~I~~se 1005 (1267)
+..++|.||+|+|||+++..||..+ + ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3579999999999999999998765 3 5555565543
No 480
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.97 E-value=0.083 Score=60.51 Aligned_cols=68 Identities=25% Similarity=0.366 Sum_probs=37.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccc-h--hc-cCccHHHHHHHH----HHHHhcCCeEEEEccchhh
Q 000823 973 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-S--KW-FGEGEKYVKAVF----SLASKIAPSVIFVDEVDSM 1041 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~-s--~~-~Ge~e~~v~~lF----~~A~k~~PsIIfIDEID~L 1041 (1267)
|+|+|-||+|||++|+.|+..+ +..++.++-..+. . .| -...|+.++..+ ..+-. ...||++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls-~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS-KDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT-T-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc-cCeEEEEeCCchH
Confidence 7999999999999999999876 6777777754442 1 11 122355554433 33222 2379999998765
No 481
>PRK06696 uridine kinase; Validated
Probab=94.96 E-value=0.054 Score=59.93 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=32.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccc
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1007 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~ 1007 (1267)
+.-|.|.|++|+|||++|+.|+..+ |.+++.+++.++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 3568999999999999999999998 6778887776653
No 482
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.94 E-value=0.18 Score=61.28 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=47.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCceEEeeccccch----------hc-----c----Cc-cHHHHHHHHHH
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITS----------KW-----F----GE-GEKYVKAVFSL 1024 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el----g~~fi~I~~seL~s----------~~-----~----Ge-~e~~v~~lF~~ 1024 (1267)
++.-+++.|++|+|||+++..+|..+ |..+..+++..+.. .. + +. +.......+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 34679999999999999988888764 56666666542211 00 0 11 22334556666
Q ss_pred HHhcCCeEEEEccchhh
Q 000823 1025 ASKIAPSVIFVDEVDSM 1041 (1267)
Q Consensus 1025 A~k~~PsIIfIDEID~L 1041 (1267)
+......+|+||=...+
T Consensus 178 ~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHhcCCCEEEEeCCCcc
Confidence 66667789999976543
No 483
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.92 E-value=0.16 Score=62.74 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=53.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEeeccccchh------ccC----------------------ccHH
Q 000823 968 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG----------------------EGEK 1016 (1267)
Q Consensus 968 kP~~gVLL~GPpGTGKT~LAkALA~el---g~~fi~I~~seL~s~------~~G----------------------e~e~ 1016 (1267)
.+...+||.||||+|||+|+..++... |-+.++++..+-... .+| ..+.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~ 340 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED 340 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHH
Confidence 344679999999999999999988765 556666665332000 011 1145
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhhh
Q 000823 1017 YVKAVFSLASKIAPSVIFVDEVDSML 1042 (1267)
Q Consensus 1017 ~v~~lF~~A~k~~PsIIfIDEID~L~ 1042 (1267)
.+..+.+.+....|.+|+||-|..+.
T Consensus 341 ~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 341 HLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 66777778888889999999999875
No 484
>PRK04040 adenylate kinase; Provisional
Probab=94.91 E-value=0.027 Score=61.03 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=25.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCceE
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA--GANFI 999 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el--g~~fi 999 (1267)
.-++|+|+||+|||++++.++..+ ++.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 578999999999999999999999 55554
No 485
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=94.91 E-value=0.63 Score=55.61 Aligned_cols=111 Identities=11% Similarity=0.109 Sum_probs=60.2
Q ss_pred CeEEEEccchhhhc----CCCCCc-hHHHHHHHHHhhhhhccCCcccCCCcEEEEEec--CCC--------------CCC
Q 000823 1030 PSVIFVDEVDSMLG----RRENPG-EHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT--NRP--------------FDL 1088 (1267)
Q Consensus 1030 PsIIfIDEID~L~~----~r~~~~-~~~~~~~il~eLL~~ldgl~~~~~~~VlVIaTT--N~p--------------~~L 1088 (1267)
|-++.||++..|+. ++.... .....-.+.+.++..+.+-... ..++.++. ..+ ..+
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~---g~vi~a~s~~~~~~a~~h~gv~~y~pr~ll 392 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTF---GSVIMAISGVTTPSAFGHLGVAPYVPRKLL 392 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhccccc---ceEEEEecccccchhccccccccCCchHhc
Confidence 56888999999997 222110 0111123344444444443221 23344433 111 233
Q ss_pred cHHHHh---cccccccCCCCCHHHHHHHHHHHHhhC----CCCCcccHHHHHHHcCCCCHHHHH
Q 000823 1089 DEAVIR---RLPRRLMVNLPDAPNRAKILQVILAKE----DLSPDVDFDAIANMTDGYSGSDLK 1145 (1267)
Q Consensus 1089 d~aLlr---RFd~vI~~~~Pd~eeR~eIL~~ll~k~----~l~~dvdl~~LA~~TeGySg~DL~ 1145 (1267)
+++... -| ..|+++.++.+|-..++..++... .+..+..+.++--+..| .++-++
T Consensus 393 g~egfe~lqpf-~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSng-NP~l~~ 454 (461)
T KOG3928|consen 393 GEEGFEALQPF-VPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNG-NPSLME 454 (461)
T ss_pred CccchhhccCc-CccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCC-CHHHHH
Confidence 343333 45 458888999999999999988763 22333445666666644 676665
No 486
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.90 E-value=0.039 Score=64.62 Aligned_cols=69 Identities=26% Similarity=0.433 Sum_probs=46.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCceEEee-ccccc---h---hccCccHHHHHHHHHHHHhcCCeEEEEccc
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFINIS-MSSIT---S---KWFGEGEKYVKAVFSLASKIAPSVIFVDEV 1038 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el-----g~~fi~I~-~seL~---s---~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEI 1038 (1267)
+++++.|++|+|||+++++++... ...++.+. ..++. . .+....+.....++..+-+..|..|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 589999999999999999999864 12233221 12221 0 011111224567888888999999999999
Q ss_pred h
Q 000823 1039 D 1039 (1267)
Q Consensus 1039 D 1039 (1267)
-
T Consensus 229 R 229 (319)
T PRK13894 229 R 229 (319)
T ss_pred C
Confidence 4
No 487
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=94.86 E-value=0.033 Score=61.28 Aligned_cols=38 Identities=39% Similarity=0.547 Sum_probs=29.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccchh
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1009 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~ 1009 (1267)
-++|+||+|||||.+|-++|+..|.+++..|.-.....
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~ 40 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPE 40 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccc
Confidence 47899999999999999999999999999997665443
No 488
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.05 Score=64.74 Aligned_cols=35 Identities=34% Similarity=0.563 Sum_probs=32.3
Q ss_pred ceeeecCCCchHHHHHHHHHHHhHhCCeEEEEecccc
Q 000823 468 RILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSL 504 (1267)
Q Consensus 468 rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~~D~~~~ 504 (1267)
-|||-||.| -.++.||+-||+-+++++-|-|.+.|
T Consensus 228 NvLllGPtG--sGKTllaqTLAr~ldVPfaIcDcTtL 262 (564)
T KOG0745|consen 228 NVLLLGPTG--SGKTLLAQTLARVLDVPFAICDCTTL 262 (564)
T ss_pred cEEEECCCC--CchhHHHHHHHHHhCCCeEEecccch
Confidence 489999999 69999999999999999999998666
No 489
>PRK14527 adenylate kinase; Provisional
Probab=94.86 E-value=0.023 Score=61.15 Aligned_cols=30 Identities=37% Similarity=0.684 Sum_probs=26.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1000 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~elg~~fi~ 1000 (1267)
.-++++||||+|||++|+.||..+++..+.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 569999999999999999999999876544
No 490
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=94.86 E-value=0.49 Score=50.38 Aligned_cols=130 Identities=19% Similarity=0.183 Sum_probs=72.1
Q ss_pred EcCCCChHHHHHHHHHHHhC-CceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCchHHHH
Q 000823 976 FGPPGTGKTMLAKAVATEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAM 1054 (1267)
Q Consensus 976 ~GPpGTGKT~LAkALA~elg-~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~ 1054 (1267)
.+.+|||||+++.||++.++ +-- +.--++.++ ...+.+..+.+...+....++|+|-=..+. ..-
T Consensus 5 IAtiGCGKTTva~aL~~LFg~wgH--vQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~---------reR 70 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGEWGH--VQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQK---------RER 70 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCCCCc--cccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchH---------HHH
Confidence 57899999999999999997 433 333334333 345667777777755566788888433221 111
Q ss_pred HHHHHhhhhhcc-CCcccCCCcEEEEEecCCCCCCcHHHHh--------cccc--cccCCCCCHHHHHHHHHHHHhhC
Q 000823 1055 RKMKNEFMVNWD-GLRTKDTERILVLAATNRPFDLDEAVIR--------RLPR--RLMVNLPDAPNRAKILQVILAKE 1121 (1267)
Q Consensus 1055 ~~il~eLL~~ld-gl~~~~~~~VlVIaTTN~p~~Ld~aLlr--------RFd~--vI~~~~Pd~eeR~eIL~~ll~k~ 1121 (1267)
.+++..+..... .+. ...++-+||-.=..+.-.+++++ |=|. .|.....+...-..|++-+++..
T Consensus 71 ~ql~~~~~~~~~~yl~--~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rf 146 (168)
T PF08303_consen 71 KQLFEDVSQLKPDYLP--YDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRF 146 (168)
T ss_pred HHHHHHHHHhcccccc--cCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhc
Confidence 223332222111 111 12345555554333332233333 4333 35555566777888888888763
No 491
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.85 E-value=0.033 Score=66.94 Aligned_cols=59 Identities=22% Similarity=0.323 Sum_probs=38.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCceEEeeccccchhccCccHHHHHHHHHHHHhcCCeEEEEccchhh
Q 000823 971 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1267)
Q Consensus 971 ~gVLL~GPpGTGKT~LAkALA~el----g~~fi~I~~seL~s~~~Ge~e~~v~~lF~~A~k~~PsIIfIDEID~L 1041 (1267)
.++++.||+|||||+|+.+++... | -.++.+.++..... ..+... ....+|+|||+..+
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~-------~~lg~v--~~~DlLI~DEvgyl 272 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST-------RQIGLV--GRWDVVAFDEVATL 272 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------HHHhhh--ccCCEEEEEcCCCC
Confidence 589999999999999999998762 4 23334444332110 111111 13579999999876
No 492
>PRK04182 cytidylate kinase; Provisional
Probab=94.83 E-value=0.026 Score=59.26 Aligned_cols=29 Identities=38% Similarity=0.686 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 000823 972 GILLFGPPGTGKTMLAKAVATEAGANFIN 1000 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~elg~~fi~ 1000 (1267)
.|+|.|++|+|||++|+.||..++++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48899999999999999999999998765
No 493
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.81 E-value=0.021 Score=58.96 Aligned_cols=33 Identities=36% Similarity=0.703 Sum_probs=26.7
Q ss_pred EEcCCCChHHHHHHHHHHHhCCceEEeeccccchh
Q 000823 975 LFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1009 (1267)
Q Consensus 975 L~GPpGTGKT~LAkALA~elg~~fi~I~~seL~s~ 1009 (1267)
|.||||+|||++|+.||..+++ +.+++.+++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~ 33 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLRE 33 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHH
Confidence 6899999999999999999875 55666665443
No 494
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.79 E-value=0.084 Score=57.30 Aligned_cols=40 Identities=28% Similarity=0.482 Sum_probs=30.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-CCceEEeeccccch
Q 000823 969 PCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITS 1008 (1267)
Q Consensus 969 P~~gVLL~GPpGTGKT~LAkALA~el-g~~fi~I~~seL~s 1008 (1267)
.|.-+++.|+||+|||+++..+...+ +..++.|+..++..
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 34679999999999999999999998 78888888776643
No 495
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.70 E-value=0.081 Score=66.55 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=53.1
Q ss_pred CCeEEEEcchhhhhc---CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcc
Q 000823 691 CPFILFMKDAEKSIA---GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSF 767 (1267)
Q Consensus 691 ~p~ILfi~di~~~l~---g~~~~~~~lk~~L~~l~g~VvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~ 767 (1267)
+.-+|+||||+.+.+ .+.+++++|....++ +.-+||.|+..+.. +
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~--gk~IIITSd~~P~e------------------------------L 424 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA--NKQIVLSSDRPPKQ------------------------------L 424 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhc--CCCEEEecCCChHh------------------------------h
Confidence 356899999997654 245677777766644 44555655443321 0
Q ss_pred ccccccCCCchhHHHHHhhcC--CCeEEEcCCCHHHHHHHHHHhhhh
Q 000823 768 GRLHDRGKEIPKATKLLTKLF--PNKVTIHMPQDEALLASWKHQLDR 812 (1267)
Q Consensus 768 ~r~~~~~~~~~~~d~~L~rrF--~~~IeI~LPdeE~Rl~IwK~qLe~ 812 (1267)
. .++..|..|| ...++|..||.|.|+.|++.+...
T Consensus 425 ~----------~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 425 V----------TLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred h----------hccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 0 1345566777 456699999999999999976543
No 496
>PLN02674 adenylate kinase
Probab=94.69 E-value=0.031 Score=63.01 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=29.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEeeccccc
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1267)
Q Consensus 970 ~~gVLL~GPpGTGKT~LAkALA~elg~~fi~I~~seL~ 1007 (1267)
...|+|.||||+||+++|+.||..+++.. +++.+++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~Gdll 66 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDML 66 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHH
Confidence 45799999999999999999999998654 4444543
No 497
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.68 E-value=0.076 Score=62.03 Aligned_cols=107 Identities=21% Similarity=0.337 Sum_probs=64.9
Q ss_pred CCCCceeEeeccCCCCcceecccCCCCCCCC-CC---CCCCCCccc-ccccccccccCCCcchhHHHHHHHHHHHHhhhc
Q 000823 614 GTRGKVALLFEDNPSSKIGVRFDKPIPDGVD-LG---GQCEGGHGF-FCNVTDLRLENSGTEDLDKLLINTLFEVVFSES 688 (1267)
Q Consensus 614 g~~g~v~~~~e~n~s~kvgv~Fd~~~~~~~~-l~---~~c~~~~~f-f~~~~~~~~~~~~~e~~~k~~i~~L~ev~~~~~ 688 (1267)
|++|.+.-..|.|.- =-.+|=+|||+||| || ...+..+.| |..-++-.- -+. -++-+||-...+.
T Consensus 148 ~q~gllrs~ieq~~i--pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a--~t~------dvR~ife~aq~~~ 217 (554)
T KOG2028|consen 148 GQDGLLRSLIEQNRI--PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA--KTN------DVRDIFEQAQNEK 217 (554)
T ss_pred CcchHHHHHHHcCCC--CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc--chH------HHHHHHHHHHHHH
Confidence 445555444554431 12689999999999 44 334444444 433333211 111 2455666654433
Q ss_pred c--CCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCC
Q 000823 689 R--SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTD 735 (1267)
Q Consensus 689 ~--~~p~ILfi~di~~~l~g~~~~~~~lk~~L~~l~g~VvvIGst~~~d 735 (1267)
. ....||||||||.+=.-++|. |.++.+. |-|.+||+||-..
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD~---fLP~VE~--G~I~lIGATTENP 261 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQDT---FLPHVEN--GDITLIGATTENP 261 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhhc---ccceecc--CceEEEecccCCC
Confidence 2 567899999999954455554 5677765 9999999999654
No 498
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.66 E-value=0.2 Score=55.85 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 000823 973 ILLFGPPGTGKTMLAKAVATE 993 (1267)
Q Consensus 973 VLL~GPpGTGKT~LAkALA~e 993 (1267)
-||+||+|+|||+|+..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999998864
No 499
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.66 E-value=0.081 Score=58.24 Aligned_cols=23 Identities=52% Similarity=0.696 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000823 972 GILLFGPPGTGKTMLAKAVATEA 994 (1267)
Q Consensus 972 gVLL~GPpGTGKT~LAkALA~el 994 (1267)
-+.+.||.|||||+||-+.|.++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 68999999999999999998766
No 500
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.19 Score=60.04 Aligned_cols=97 Identities=22% Similarity=0.379 Sum_probs=68.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh--CCceEEeeccccch------hccC--------ccHHHHHHHHHHHHhcCCe
Q 000823 968 KPCKGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSITS------KWFG--------EGEKYVKAVFSLASKIAPS 1031 (1267)
Q Consensus 968 kP~~gVLL~GPpGTGKT~LAkALA~el--g~~fi~I~~seL~s------~~~G--------e~e~~v~~lF~~A~k~~Ps 1031 (1267)
-|..-+||-|.||.|||+|.-.++..+ ..++++++..+-.. +..| ..|..+..+...+....|.
T Consensus 91 V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~ 170 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPD 170 (456)
T ss_pred ccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCC
Confidence 344568999999999999988888776 33799998865322 1222 2355678888888999999
Q ss_pred EEEEccchhhhcCC--CCCchHHHHHHHHHhhhhh
Q 000823 1032 VIFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVN 1064 (1267)
Q Consensus 1032 IIfIDEID~L~~~r--~~~~~~~~~~~il~eLL~~ 1064 (1267)
+++||-|..++... ..++.-...+...++|+..
T Consensus 171 lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~ 205 (456)
T COG1066 171 LVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRL 205 (456)
T ss_pred EEEEeccceeecccccCCCCcHHHHHHHHHHHHHH
Confidence 99999999998554 2233334455666666543
Done!