Query 000823
Match_columns 1267
No_of_seqs 580 out of 4070
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 17:48:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000823.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_591-595//hhsearch_pdb/000823hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 1.0 1 1 589.7 23.2 549 423-1254 199-764 (806)
2 1ypw_A Transitional endoplasmi 1.0 1 1 414.8 9.1 545 424-1254 200-764 (806)
3 4b4t_J 26S protease regulatory 1.0 1 1 374.2 25.6 252 928-1238 141-396 (405)
4 3cf2_A TER ATPase, transitiona 1.0 1 1 372.9 7.5 288 929-1259 198-487 (806)
5 4b4t_I 26S protease regulatory 1.0 1 1 366.9 22.3 253 928-1239 175-431 (437)
6 4b4t_H 26S protease regulatory 1.0 1 1 366.7 25.8 261 929-1249 203-467 (467)
7 4b4t_M 26S protease regulatory 1.0 1 1 365.7 24.5 252 928-1238 174-429 (434)
8 4b4t_L 26S protease subunit RP 1.0 1 1 363.3 23.2 251 929-1238 175-429 (437)
9 4b4t_K 26S protease regulatory 1.0 1 1 351.9 25.9 250 929-1237 166-421 (428)
10 1xwi_A SKD1 protein; VPS4B, AA 1.0 1 1 313.0 26.9 290 929-1256 6-322 (322)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=589.70 Aligned_cols=549 Identities=26% Similarity=0.436 Sum_probs=431.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEC
Q ss_conf 23322334434304589999988763036875112-12333468991364068970588999999998571990999834
Q 000823 423 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAK-YTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 501 (1267)
Q Consensus 423 ~~vsf~~FPYylse~tk~~L~~~~~~hL~~~~~~~-~~~~L~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~lD~ 501 (1267)
-+|+|++...+ +..|..|.+....+|+|+++.+ ++ ...++.|||+|||| +++.+||||+|++.++.++.++.
T Consensus 199 ~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~f~~~g---~~~p~GILL~GPPG--TGKT~LAraiA~elg~~~~~v~~ 271 (806)
T 3cf2_A 199 NEVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKAIG---VKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp SSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGGGTSCC---CCCCCEEEEECCTT--SCHHHHHHHHHTTTTCEEEEEEH
T ss_pred CCCCHHHHCCH--HHHHHHHHHHHHHHCCCHHHHHHCC---CCCCCEEEEECCCC--CCHHHHHHHHHHHHCCEEEEEEH
T ss_conf 99990351499--9999999999998751989886358---99997589779899--98899999999971983999973
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56579986256765203886433446556799703343101788888899999999999999999654555554446655
Q 000823 502 HSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSK 581 (1267)
Q Consensus 502 ~~~~g~~~~~e~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 581 (1267)
+++.+
T Consensus 272 ~~l~s--------------------------------------------------------------------------- 276 (806)
T 3cf2_A 272 PEIMS--------------------------------------------------------------------------- 276 (806)
T ss_dssp HHHHS---------------------------------------------------------------------------
T ss_pred HHHHC---------------------------------------------------------------------------
T ss_conf 79543---------------------------------------------------------------------------
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 52344677257832689999998999999998777716674114999862100248999978789877788662101354
Q 000823 582 NHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTD 661 (1267)
Q Consensus 582 ~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~ 661 (1267)
T Consensus 277 -------------------------------------------------------------------------------- 276 (806)
T 3cf2_A 277 -------------------------------------------------------------------------------- 276 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCC----CCCHHHHHHHHH----HCC--CCCEEEEEEC
Q ss_conf 344688840147999999999986301479849997250434138----942256789987----219--9948999410
Q 000823 662 LRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG----NSDSYSTFKSRL----EKL--PDKVIVIGSH 731 (1267)
Q Consensus 662 ~~~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfi~di~~~l~g----~~~~~~~lk~~L----~~l--~g~vvvIGs~ 731 (1267)
+|+|+ .+..++.+|+.+.. .+|+||||||+|.++.. ..+....+...| +.+ .++|+|||+|
T Consensus 277 ----k~~ge--se~~lr~lF~~A~~---~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 277 ----KLAGE--SESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp ----SCTTH--HHHHHHHHHHHHTT---SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred ----CCCHH--HHHHHHHHHHHHHH---CCCEEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf ----33167--89999999999997---2992999851002334457788739999999999997466666987999966
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 35788334589998620134773111101357884344333578703678898420897399707987889999998546
Q 000823 732 THTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 811 (1267)
Q Consensus 732 ~~~d~~~~~~~~~~~~l~~~g~~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~l~rlFp~~IeI~LPdeE~RL~Ilk~qLe 811 (1267)
|+++..|++ |+|||| |+.+|+|++|+.++|.+||+.++.
T Consensus 348 N~~d~LD~A-------LrR~GR----------------------------------Fd~~I~i~~Pd~~~R~~IL~~~l~ 386 (806)
T 3cf2_A 348 NRPNSIDPA-------LRRFGR----------------------------------FDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp SSTTTSCTT-------TTSTTS----------------------------------SCEEEECCCCCHHHHHHHHHHTCS
T ss_pred CCHHHCCHH-------HHCCCC----------------------------------CCEEEECCCCCHHHHHHHHHHHHC
T ss_conf 980326988-------857863----------------------------------616886689798999999999856
Q ss_pred HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCHHHHHH
Q ss_conf 556664202674068888652499876632310123344659999999999973320499999--754322350237778
Q 000823 812 RDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEAD--PDARLVLSCESIQYG 889 (1267)
Q Consensus 812 k~~k~l~~~~Nv~~l~~vL~~~glsgaDLe~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p~--~~~kl~Is~edl~~a 889 (1267)
. .....+++....+..++||.|+||..+|.++.+. .+.......-....... ......+..+||..+
T Consensus 387 ~----~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~-------A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~A 455 (806)
T 3cf2_A 387 N----MKLADDVDLEQVANETHGHVGADLAALCSEAALQ-------AIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWA 455 (806)
T ss_dssp S----SEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHH-------HHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHH
T ss_pred C----CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH-------HHHHCCCCCCCCCCCCCHHHHCCCEEEHHHHHHH
T ss_conf 8----9988643899999756899899999999999999-------9984145120001332045522556519999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCC
Q ss_conf 87899999866765310144579779999983376899998756100014099999999998572576256630898889
Q 000823 890 IGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKP 969 (1267)
Q Consensus 890 l~~lq~l~~~~k~~k~~~k~~v~~~ele~~li~~ii~~~~~~vt~ddI~Gle~vk~~L~e~I~~pl~~~e~f~k~~~~kP 969 (1267)
+...++. . ..-.......++|++++|++++++.|++.+.+|+++++.|.+.+. +|
T Consensus 456 l~~~~ps--------------~----------~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~-~~ 510 (806)
T 3cf2_A 456 LSQSNPS--------------A----------LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TP 510 (806)
T ss_dssp HSSSSCC--------------C----------CCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCC-CC
T ss_pred HHHCCCC--------------C----------CCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CC
T ss_conf 9728783--------------1----------123444578878888178899999999999756668999971488-88
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCC-
Q ss_conf 8249999589983999999999991995699611100010027518999999999871299179993521221389998-
Q 000823 970 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP- 1048 (1267)
Q Consensus 970 ~~gILL~GPpGTGKT~LAkAIA~elg~~vi~Id~seL~s~~~Ge~ek~I~~iF~~A~k~~PsIIiIDEID~L~~~r~~~- 1048 (1267)
++++|||||||||||++|+++|++++.+|+.++.++++++|+|+++++++.+|..|++.+||||||||||.|++.|+..
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~ 590 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 590 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC-------
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCC
T ss_conf 86079866877896399999999838966874241121033436899999999999972996352042567763158888
Q ss_pred -CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf -4379999998865542168865677768999943999999599982--0354436999998899999999983079999
Q 000823 1049 -GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSP 1125 (1267)
Q Consensus 1049 -~~~~a~~~il~~LL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~ll~k~~l~~ 1125 (1267)
..+....+++++||.+||++.. ..+|+||+|||+|+.||++++| ||++.|+|++|+.++|.+||+.++.+..+..
T Consensus 591 ~~~~~~~~rv~~~lL~~mdg~~~--~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~ 668 (806)
T 3cf2_A 591 GDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 668 (806)
T ss_dssp -------CHHHHHHHHHHHSSCS--SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CC
T ss_pred CCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCCHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 89866999999999999748787--7998999937980438984717785507999799699999999999856799987
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 03099999982799899999977643447778753334567999999999999999999999999998999998864199
Q 000823 1126 DVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGK 1205 (1267)
Q Consensus 1126 didl~~LA~~TeGySg~DLk~LI~~a~li~~v~~~~~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~k~~~~~a~~e~~ 1205 (1267)
++++..||++|+||||+||. ++|++|++.++++.++.............
T Consensus 669 ~~dl~~la~~t~g~SGadi~------------------------------~l~~~A~~~a~r~~~~~~~~~~~~~~~~~- 717 (806)
T 3cf2_A 669 DVDLEFLAKMTNGFSGADLT------------------------------EICQRACKLAIRESIESEIRRERERQTNP- 717 (806)
T ss_dssp C----------------CHH------------------------------HHHHHHHHHHHHHHHC--------------
T ss_pred CCCHHHHHHHCCCCCHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
T ss_conf 78999999768999999999------------------------------99999999999999985644433301574-
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 9998779888766679999999998034656543331355799994289
Q 000823 1206 PAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGE 1254 (1267)
Q Consensus 1206 ~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~~~~~~~v~W~digG~ 1254 (1267)
...........++|+++||.+|++.++||++.+.. ..|.+|++.++.
T Consensus 718 ~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l--~~y~~~~~~f~~ 764 (806)
T 3cf2_A 718 SAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDI--RKYEMFAQTLQQ 764 (806)
T ss_dssp ----------CCC----CCTTTC-----------------CCCC-----
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHHHC
T ss_conf 10012334566864799999999867999999999--999999999725
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=414.84 Aligned_cols=545 Identities=26% Similarity=0.432 Sum_probs=398.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf 33223344343045899999887630368751121233346899136406897058899999999857199099983456
Q 000823 424 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 503 (1267)
Q Consensus 424 ~vsf~~FPYylse~tk~~L~~~~~~hL~~~~~~~~~~~L~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~lD~~~ 503 (1267)
.++|+++-.+ +..+..|.+....+|+|+++.+... ......|||.||+| +.+++||||||+..+..++.++...
T Consensus 200 ~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~~~~l~--i~~~~~vLL~Gp~G--tGKTtLarala~~l~~~~i~v~~~~ 273 (806)
T 1ypw_A 200 EVGYDDVGGC--RKQLAQIKEMVELPLRHPALFKAIG--VKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGPE 273 (806)
T ss_dssp SCCGGGCCSC--SGGGGHHHHHHHHHHHCGGGGTSSC--CCCCCEEEECSCTT--SSHHHHHHHHHHTTTCEEEEEEHHH
T ss_pred CCCHHHHCCH--HHHHHHHHHHHHHHHHCHHHHHHCC--CCCCCEEEEECCCC--CCHHHHHHHHHHHCCCCEEEEECHH
T ss_conf 8998882880--9999999999998742989998638--89997389989399--9879999999997199689997557
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 57998625676520388643344655679970334310178888889999999999999999965455555444665552
Q 000823 504 LLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKNH 583 (1267)
Q Consensus 504 ~~g~~~~~e~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 583 (1267)
+.+
T Consensus 274 l~~----------------------------------------------------------------------------- 276 (806)
T 1ypw_A 274 IMS----------------------------------------------------------------------------- 276 (806)
T ss_dssp HSS-----------------------------------------------------------------------------
T ss_pred HHH-----------------------------------------------------------------------------
T ss_conf 654-----------------------------------------------------------------------------
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34467725783268999999899999999877771667411499986210024899997878987778866210135434
Q 000823 584 MLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDLR 663 (1267)
Q Consensus 584 ~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~ 663 (1267)
T Consensus 277 -------------------------------------------------------------------------------- 276 (806)
T 1ypw_A 277 -------------------------------------------------------------------------------- 276 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCC----CCHH----HHHHHHHHCC--CCCEEEEEECCC
Q ss_conf 46888401479999999999863014798499972504341389----4225----6789987219--994899941035
Q 000823 664 LENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDSY----STFKSRLEKL--PDKVIVIGSHTH 733 (1267)
Q Consensus 664 ~~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfi~di~~~l~g~----~~~~----~~lk~~L~~l--~g~vvvIGs~~~ 733 (1267)
+|.++ ....+..+|+.+.. ..|.||||||++.++... .+.. +.+...++.. ..++++|+++|.
T Consensus 277 --~~~g~--~~~~l~~vf~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~ 349 (806)
T 1ypw_A 277 --KLAGE--SESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (806)
T ss_dssp --SSTTH--HHHHHHHHHHHHHH---HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSC
T ss_pred --HHHHH--HHHHHHHHHHHHHH---CCCCEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf --41015--89999999999986---499579830077751114666316889999999998654114661787602398
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 78833458999862013477311110135788434433357870367889842089739970798788999999854655
Q 000823 734 TDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRD 813 (1267)
Q Consensus 734 ~d~~~~~~~~~~~~l~~~g~~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~l~rlFp~~IeI~LPdeE~RL~Ilk~qLek~ 813 (1267)
++..+++ ++++|| |...+.|.+|+.+.|+.+|+.++++
T Consensus 350 ~~~ld~a-------l~r~gR----------------------------------f~~~i~i~~p~~~~r~~il~~~~~~- 387 (806)
T 1ypw_A 350 PNSIDPA-------LRRFGR----------------------------------FDREVDIGIPDATGRLEILQIHTKN- 387 (806)
T ss_dssp TTTSCTT-------TTSTTS----------------------------------SCEEECCCCCCHHHHHHHHHHTTTT-
T ss_pred CHHCCHH-------HHCCCC----------------------------------CCCCCCCCCCCHHHHHHHHHHHHHC-
T ss_conf 1004999-------864655----------------------------------4443556999999999999998733-
Q ss_pred HHHHHHCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC---C---CCCCCCCCCHHHH
Q ss_conf 666420267406888865249987663231012334465999999999997332049999---9---7543223502377
Q 000823 814 SETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEA---D---PDARLVLSCESIQ 887 (1267)
Q Consensus 814 ~k~l~~~~Nv~~l~~vL~~~glsgaDLe~L~~~d~~ls~~aIe~iv~~A~s~~l~~~~~p---~---~~~kl~Is~edl~ 887 (1267)
+....+......+..+.++.++++..+|.++. ..+..+........ . ......+..+++.
T Consensus 388 ---~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~-----------~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~ 453 (806)
T 1ypw_A 388 ---MKLADDVDLEQVANETHGHVGADLAALCSEAA-----------LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFR 453 (806)
T ss_dssp ---SCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHH-----------HHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHH
T ss_pred ---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH-----------HHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHH
T ss_conf ---87762200677777614753689999999999-----------9987642010115542010124445555566531
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCC
Q ss_conf 78878999998667653101445797799999833768999987561000140999999999985725762566308988
Q 000823 888 YGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLT 967 (1267)
Q Consensus 888 ~al~~lq~l~~~~k~~k~~~k~~v~~~ele~~li~~ii~~~~~~vt~ddI~Gle~vk~~L~e~I~~pl~~~e~f~k~~~~ 967 (1267)
.++... ... ...........++|++++|++++++.|.+.+.++..+++.+...+.
T Consensus 454 ~al~~~----------~~s--------------~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~- 508 (806)
T 1ypw_A 454 WALSQS----------NPS--------------ALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM- 508 (806)
T ss_dssp HHHHHS----------CCC--------------CCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCC-
T ss_pred CCCCCC----------CCH--------------HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCC-
T ss_conf 111235----------714--------------4420002575421111244302222189999755536398975488-
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCC
Q ss_conf 89824999958998399999999999199569961110001002751899999999987129917999352122138999
Q 000823 968 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1047 (1267)
Q Consensus 968 kP~~gILL~GPpGTGKT~LAkAIA~elg~~vi~Id~seL~s~~~Ge~ek~I~~iF~~A~k~~PsIIiIDEID~L~~~r~~ 1047 (1267)
.+..++||+||||||||++|+++|.+++.+|+.++++++.+.|+|+.++.++.+|..|+...|+||||||||.++..+..
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~ 588 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGG 588 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCC
T ss_conf 87753689779998789999999998489879986167655305754788999999987069859999874454211268
Q ss_pred C--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8--4379999998865542168865677768999943999999599982--03544369999988999999999830799
Q 000823 1048 P--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDL 1123 (1267)
Q Consensus 1048 ~--~~~~a~~~il~~LL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~ll~k~~l 1123 (1267)
. .......+++++|+..|++... ..+++||+|||+++.+|+++++ ||+..|+|+.|+.++|.+||+.++.+..+
T Consensus 589 ~~~~~~~~~~~v~~~LL~~ld~~~~--~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~ 666 (806)
T 1ypw_A 589 NIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV 666 (806)
T ss_dssp CCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCC
T ss_conf 7777641689999999998754566--68769998438712279878376556730555997999999999998645999
Q ss_pred CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99030999999827998999999776434477787533345679999999999999999999999999989999988641
Q 000823 1124 SPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAE 1203 (1267)
Q Consensus 1124 ~~didl~~LA~~TeGySg~DLk~LI~~a~li~~v~~~~~l~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~k~~~~~a~~e 1203 (1267)
..++++..++..++||+++||. ++|++|+..++++.++...........
T Consensus 667 ~~~~~l~~la~~t~g~sgadi~------------------------------~l~~~a~~~a~~~~~~~~~~~~~~~~~- 715 (806)
T 1ypw_A 667 AKDVDLEFLAKMTNGFSGADLT------------------------------EICQRACKLAIRESIESEIRRERERQT- 715 (806)
T ss_dssp --CCCCSCSCGGGSSSCCHHHH------------------------------HHHHHHHHHHHSCC--------------
T ss_pred CCCCCHHHHHHHCCCCCHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_conf 7522799999735005999999------------------------------999999999999999987766543014-
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 999998779888766679999999998034656543331355799994289
Q 000823 1204 GKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGE 1254 (1267)
Q Consensus 1204 ~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~~~~~~~v~W~digG~ 1254 (1267)
..............+|+++||.+|++.++|+++.+. ...+.+|.+.++.
T Consensus 716 ~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~--~~~ye~~~~~~~~ 764 (806)
T 1ypw_A 716 NPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDND--IRKYEMFAQTLQQ 764 (806)
T ss_dssp -----------CCTTTTTTSSCCCCCC------------------------
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHHHH
T ss_conf 643123343466676079999999986789999999--9999999999976
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=374.23 Aligned_cols=252 Identities=33% Similarity=0.579 Sum_probs=231.8
Q ss_pred CCCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99875610001409999999999857257625663089888982499995899839999999999919956996111000
Q 000823 928 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1267)
Q Consensus 928 ~~~~vt~ddI~Gle~vk~~L~e~I~~pl~~~e~f~k~~~~kP~~gILL~GPpGTGKT~LAkAIA~elg~~vi~Id~seL~ 1007 (1267)
..++++|+||+|+++++++|++.|.+|+.+|+.|.+.+. +|++|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHH
T ss_conf 799998888288899999999999998749999986799-9888258858999987899999998518885288868951
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
Q ss_conf 10027518999999999871299179993521221389998--4379999998865542168865677768999943999
Q 000823 1008 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1267)
Q Consensus 1008 s~~~Ge~ek~I~~iF~~A~k~~PsIIiIDEID~L~~~r~~~--~~~~a~~~il~~LL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1267)
++|+|++++.++.+|..|+..+||||||||||.+++.|... .......+++++||..||++.. ..+|+||+|||+|
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~V~vIaATNrp 297 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--SKNIKIIMATNRL 297 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--CCCEEEEEEESCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEECCCCH
T ss_conf 13354689999999999987099467653341111577888999768999999999996043388--8875788126981
Q ss_pred CCCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999599982--035443699999889999999998307999903099999982799899999977643447778753334
Q 000823 1086 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLW 1163 (1267)
Q Consensus 1086 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~ll~k~~l~~didl~~LA~~TeGySg~DLk~LI~~a~li~~v~~~~~l 1163 (1267)
+.||++++| ||++.|+|++|+.++|.+||+.++.+..+..++++..||..|+||||+||+
T Consensus 298 d~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~------------------ 359 (405)
T 4b4t_J 298 DILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVK------------------ 359 (405)
T ss_dssp SSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHH------------------
T ss_pred HHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHH------------------
T ss_conf 44899672877676699769969999999999985599999657999999877999999999------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 567999999999999999999999999998999998864199999877988876667999999999803465654
Q 000823 1164 SDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1238 (1267)
Q Consensus 1164 ~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~k~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~ 1238 (1267)
++|++|++.++++ ....|+++||..|++++.+.....
T Consensus 360 ------------~l~~eA~~~Air~--------------------------~~~~vt~~Df~~Al~~v~~~~~~~ 396 (405)
T 4b4t_J 360 ------------GVCTEAGMYALRE--------------------------RRIHVTQEDFELAVGKVMNKNQET 396 (405)
T ss_dssp ------------HHHHHHHHHHHHT--------------------------TCSBCCHHHHHHHHHHHHHHHTCC
T ss_pred ------------HHHHHHHHHHHHC--------------------------CCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf ------------9999999999986--------------------------998759999999999985726555
No 4
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=372.91 Aligned_cols=288 Identities=37% Similarity=0.593 Sum_probs=253.3
Q ss_pred CCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 98756100014099999999998572576256630898889824999958998399999999999199569961110001
Q 000823 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1267)
Q Consensus 929 ~~~vt~ddI~Gle~vk~~L~e~I~~pl~~~e~f~k~~~~kP~~gILL~GPpGTGKT~LAkAIA~elg~~vi~Id~seL~s 1008 (1267)
...++|+||+|+++++++|++.+.+|+.+|+.|...+. +|++|+|||||||||||+||+++|++++.+|+.++++++.+
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~-~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCC-CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHC
T ss_conf 89999035149999999999999987519898863589-99975897798999889999999997198399997379543
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 00275189999999998712991799935212213899984379999998865542168865677768999943999999
Q 000823 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL 1088 (1267)
Q Consensus 1009 ~~~Ge~ek~I~~iF~~A~k~~PsIIiIDEID~L~~~r~~~~~~~a~~~il~~LL~~ldgl~~~~~~~VlVIaTTN~p~~L 1088 (1267)
+|.|+.++.++.+|..|++++||||||||||.+++.|.... ....++++++|+..|+++.. ..+|+||++||+++.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~--~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCG--GGCEEEEEECSSTTTS
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCHHHC
T ss_conf 33167899999999999972992999851002334457788-73999999999999746666--6987999966980326
Q ss_pred CHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 599982--035443699999889999999998307999903099999982799899999977643447778753334567
Q 000823 1089 DEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDW 1166 (1267)
Q Consensus 1089 d~aLlr--RFd~~I~v~~Pd~eeR~eILk~ll~k~~l~~didl~~LA~~TeGySg~DLk~LI~~a~li~~v~~~~~l~~~ 1166 (1267)
|++++| ||++.|+++.|+.++|.+||+.++.+..+..++++..+|..|+||+|+||.
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~--------------------- 412 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA--------------------- 412 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHH---------------------
T ss_pred CHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHH---------------------
T ss_conf 98885786361688668979899999999985689988643899999756899899999---------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 99999999999999999999999999899999886419999987798887666799999999980346565433313557
Q 000823 1167 LLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELL 1246 (1267)
Q Consensus 1167 i~~~l~~l~~Lc~~Aa~~aire~l~~~k~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~~~~~~~v 1246 (1267)
.+|++|++.++++.+...... .. ...........|+++||..|++.+.|+..++.....|.+
T Consensus 413 ---------~Lv~eA~~~A~~r~~~~i~~~------~~---~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v 474 (806)
T 3cf2_A 413 ---------ALCSEAALQAIRKKMDLIDLE------DE---TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQV 474 (806)
T ss_dssp ---------HHHHHHHHHHHHHHHHHGGGT------CC---CCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCC
T ss_pred ---------HHHHHHHHHHHHHCCCCCCCC------CC---CCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf ---------999999999998414512000------13---320455225565199999999728783112344457887
Q ss_pred HHHHHHCCCCCCC
Q ss_conf 9999428998755
Q 000823 1247 QWNELYGEGGSRR 1259 (1267)
Q Consensus 1247 ~W~digG~~~~rk 1259 (1267)
.|+|++|.+..++
T Consensus 475 ~w~diggl~~~k~ 487 (806)
T 3cf2_A 475 TWEDIGGLEDVKR 487 (806)
T ss_dssp CSTTCCSCHHHHH
T ss_pred CHHHHCCHHHHHH
T ss_conf 8888178899999
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=366.94 Aligned_cols=253 Identities=35% Similarity=0.615 Sum_probs=231.7
Q ss_pred CCCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99875610001409999999999857257625663089888982499995899839999999999919956996111000
Q 000823 928 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1267)
Q Consensus 928 ~~~~vt~ddI~Gle~vk~~L~e~I~~pl~~~e~f~k~~~~kP~~gILL~GPpGTGKT~LAkAIA~elg~~vi~Id~seL~ 1007 (1267)
..++++|+||+|+++++++|++.+.+|+.+|+.|.+.+. +|++|+|||||||||||++|+|+|++++.+|+.+++++++
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi-~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC-CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred CCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 689986005576999999999999998769999986799-9777884488999639999999999859987998879953
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
Q ss_conf 100275189999999998712991799935212213899984--379999998865542168865677768999943999
Q 000823 1008 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1267)
Q Consensus 1008 s~~~Ge~ek~I~~iF~~A~k~~PsIIiIDEID~L~~~r~~~~--~~~a~~~il~~LL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1267)
++|+|++++.++.+|..|+..+||||||||||.+++.|.... ......+++++||..+|+... ..+++||+|||++
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~--~~~ViVIaATNrp 331 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD--RGDVKVIMATNKI 331 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC--SSSEEEEEEESCS
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCH
T ss_conf 14476699999999999986599189876122203667788877658999999999997247678--8997999957980
Q ss_pred CCCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999599982--035443699999889999999998307999903099999982799899999977643447778753334
Q 000823 1086 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLW 1163 (1267)
Q Consensus 1086 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~ll~k~~l~~didl~~LA~~TeGySg~DLk~LI~~a~li~~v~~~~~l 1163 (1267)
+.||++++| |||+.|+|++|+.++|.+||+.++.+..+..++++..||..|+||||+||+
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~------------------ 393 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQ------------------ 393 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHH------------------
T ss_pred HHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHH------------------
T ss_conf 55599886488602799808969999999999996489999767999999767999899999------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 5679999999999999999999999999989999988641999998779888766679999999998034656543
Q 000823 1164 SDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSES 1239 (1267)
Q Consensus 1164 ~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~k~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~ 1239 (1267)
++|++|++.++++ ....|+++||.+|++++.++...+.
T Consensus 394 ------------~l~~eA~~~Air~--------------------------~~~~It~eDf~~Al~rv~~~~~~e~ 431 (437)
T 4b4t_I 394 ------------AMCTEAGLLALRE--------------------------RRMQVTAEDFKQAKERVMKNKVEEN 431 (437)
T ss_dssp ------------HHHHHHHHHHHHT--------------------------TCSCBCHHHHHHHHHHHHHHHCCCS
T ss_pred ------------HHHHHHHHHHHHC--------------------------CCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf ------------9999999999984--------------------------8996699999999998707987334
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=366.69 Aligned_cols=261 Identities=33% Similarity=0.577 Sum_probs=236.3
Q ss_pred CCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 98756100014099999999998572576256630898889824999958998399999999999199569961110001
Q 000823 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1267)
Q Consensus 929 ~~~vt~ddI~Gle~vk~~L~e~I~~pl~~~e~f~k~~~~kP~~gILL~GPpGTGKT~LAkAIA~elg~~vi~Id~seL~s 1008 (1267)
.++++|+||+|++++|++|++.|.+|+.+|+.|.+.++ +|++|+|||||||||||++|+|+|++++++|+.++++++++
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi-~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI-DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCC-CCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHC
T ss_conf 99998788545999999999999988429999987799-99981476489998099999999844689869988699502
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0027518999999999871299179993521221389998--43799999988655421688656777689999439999
Q 000823 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1267)
Q Consensus 1009 ~~~Ge~ek~I~~iF~~A~k~~PsIIiIDEID~L~~~r~~~--~~~~a~~~il~~LL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1267)
+|+|++++.++.+|..|+..+||||||||||.++..|... +......++++.+|..|++... ..+|+||+|||+++
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATNrpd 359 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--RGNIKVMFATNRPN 359 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC--TTTEEEEEECSCTT
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEECCCCCC
T ss_conf 6677899999999999876178467522321101355676778627899999999998655578--88379882878931
Q ss_pred CCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99599982--0354436999998899999999983079999030999999827998999999776434477787533345
Q 000823 1087 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWS 1164 (1267)
Q Consensus 1087 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~ll~k~~l~~didl~~LA~~TeGySg~DLk~LI~~a~li~~v~~~~~l~ 1164 (1267)
.||++++| ||++.|+|++|+.++|.+||+.++.+..+..++++..||..|+||||+||+
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~------------------- 420 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELR------------------- 420 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHH-------------------
T ss_pred CCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHH-------------------
T ss_conf 1795463666550799838969999999999985489998777999999777999999999-------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 67999999999999999999999999998999998864199999877988876667999999999803465654333135
Q 000823 1165 DWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSE 1244 (1267)
Q Consensus 1165 ~~i~~~l~~l~~Lc~~Aa~~aire~l~~~k~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~~~~~~~ 1244 (1267)
++|++|++.++++ ....++++||.+|++++.++.-+.. ....
T Consensus 421 -----------~l~~eAa~~Air~--------------------------~~~~it~~Df~~Al~kV~~g~~k~s-~~~~ 462 (467)
T 4b4t_H 421 -----------SVCTEAGMFAIRA--------------------------RRKVATEKDFLKAVDKVISGYKKFS-STSR 462 (467)
T ss_dssp -----------HHHHHHHHHHHHH--------------------------TCSSBCHHHHHHHHHHHHHHHCC-------
T ss_pred -----------HHHHHHHHHHHHC--------------------------CCCCCCHHHHHHHHHHHHCCCCCCH-HHHH
T ss_conf -----------9999999999983--------------------------8876699999999999964745612-5789
Q ss_pred HHHHH
Q ss_conf 57999
Q 000823 1245 LLQWN 1249 (1267)
Q Consensus 1245 ~v~W~ 1249 (1267)
+.+||
T Consensus 463 y~~~n 467 (467)
T 4b4t_H 463 YMQYN 467 (467)
T ss_dssp -----
T ss_pred HHHHC
T ss_conf 98619
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=365.66 Aligned_cols=252 Identities=33% Similarity=0.574 Sum_probs=232.4
Q ss_pred CCCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99875610001409999999999857257625663089888982499995899839999999999919956996111000
Q 000823 928 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1267)
Q Consensus 928 ~~~~vt~ddI~Gle~vk~~L~e~I~~pl~~~e~f~k~~~~kP~~gILL~GPpGTGKT~LAkAIA~elg~~vi~Id~seL~ 1007 (1267)
..+.++|+||+|++++++.|++.+.+|+.+|+.|.+.+. +|++|+|||||||||||++|+|+|++++++|+.++++++.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~-~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI-RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 897998676095799999999999999749999986799-9887268779499988999999999959988998644643
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
Q ss_conf 1002751899999999987129917999352122138999843--79999998865542168865677768999943999
Q 000823 1008 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE--HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1267)
Q Consensus 1008 s~~~Ge~ek~I~~iF~~A~k~~PsIIiIDEID~L~~~r~~~~~--~~a~~~il~~LL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1267)
++|+|++++.++.+|..|+..+||||||||||.+++.|..... .....++++.||..|+++.. ..+|+||||||+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~--~~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS--DDRVKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS--SCSSEEEEECSSC
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCC
T ss_conf 13456389999999999986199089603325665225778888746999999999997136688--8998999948992
Q ss_pred CCCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999599982--035443699999889999999998307999903099999982799899999977643447778753334
Q 000823 1086 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLW 1163 (1267)
Q Consensus 1086 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~ll~k~~l~~didl~~LA~~TeGySg~DLk~LI~~a~li~~v~~~~~l 1163 (1267)
+.||++++| ||++.|+|++|+.++|.+||+.++.+..+..++++..||..|+||||+||+
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~------------------ 392 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLK------------------ 392 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHH------------------
T ss_pred HHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHH------------------
T ss_conf 23399671577403899808959999999999985689998767999999868998999999------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 567999999999999999999999999998999998864199999877988876667999999999803465654
Q 000823 1164 SDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1238 (1267)
Q Consensus 1164 ~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~k~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~ 1238 (1267)
++|++|++.++++ +...|+++||.+|+++++|+.++.
T Consensus 393 ------------~l~~eA~~~a~r~--------------------------~~~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 393 ------------AVTVEAGMIALRN--------------------------GQSSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp ------------HHHHHHHHHHHHH--------------------------TCSSBCHHHHHHHHHSCSSSCCCC
T ss_pred ------------HHHHHHHHHHHHC--------------------------CCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf ------------9999999999986--------------------------998769999999999973777757
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=363.31 Aligned_cols=251 Identities=38% Similarity=0.657 Sum_probs=230.4
Q ss_pred CCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 98756100014099999999998572576256630898889824999958998399999999999199569961110001
Q 000823 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1267)
Q Consensus 929 ~~~vt~ddI~Gle~vk~~L~e~I~~pl~~~e~f~k~~~~kP~~gILL~GPpGTGKT~LAkAIA~elg~~vi~Id~seL~s 1008 (1267)
.++++|+||+|++++++.|++.+.+|+.+|+.|.+.++ +|++|+|||||||||||++|+|+|++++++|+.++++++++
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~-~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHCC
T ss_conf 99989667178599999999999998749999986798-97876999899998499999999998599989984146205
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 00275189999999998712991799935212213899984--3799999988655421688656777689999439999
Q 000823 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1267)
Q Consensus 1009 ~~~Ge~ek~I~~iF~~A~k~~PsIIiIDEID~L~~~r~~~~--~~~a~~~il~~LL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1267)
+|.|++++.++.+|..|+..+||||||||||.+++.|.... ......+++++||..||++.. ..+++||+|||+|+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN--LGQTKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC--TTSSEEEEEESSTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCCH
T ss_conf 5201789999999999986389646420443333333447887536899999999998346667--79869999339903
Q ss_pred CCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99599982--0354436999998899999999983079999030999999827998999999776434477787533345
Q 000823 1087 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWS 1164 (1267)
Q Consensus 1087 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~ll~k~~l~~didl~~LA~~TeGySg~DLk~LI~~a~li~~v~~~~~l~ 1164 (1267)
.||++++| ||++.|+|++|+.++|.+||+.++.+..+..++|+..+|..|+||||+||+
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~------------------- 392 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIR------------------- 392 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHH-------------------
T ss_pred HHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHH-------------------
T ss_conf 3189782777102001359969999999999986589998645899999768999999999-------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 67999999999999999999999999998999998864199999877988876667999999999803465654
Q 000823 1165 DWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1238 (1267)
Q Consensus 1165 ~~i~~~l~~l~~Lc~~Aa~~aire~l~~~k~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v~pS~s~~ 1238 (1267)
++|++|++.++++ +...|+++||.+|++++.++...+
T Consensus 393 -----------~l~~eA~~~air~--------------------------~~~~i~~~d~~~Al~~v~~~~k~e 429 (437)
T 4b4t_L 393 -----------NCATEAGFFAIRD--------------------------DRDHINPDDLMKAVRKVAEVKKLE 429 (437)
T ss_dssp -----------HHHHHHHHHHHHT--------------------------TCSSBCHHHHHHHHHHHHHTCC--
T ss_pred -----------HHHHHHHHHHHHC--------------------------CCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf -----------9999999999986--------------------------998779999999999987503701
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=351.91 Aligned_cols=250 Identities=35% Similarity=0.575 Sum_probs=227.1
Q ss_pred CCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 98756100014099999999998572576256630898889824999958998399999999999199569961110001
Q 000823 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1267)
Q Consensus 929 ~~~vt~ddI~Gle~vk~~L~e~I~~pl~~~e~f~k~~~~kP~~gILL~GPpGTGKT~LAkAIA~elg~~vi~Id~seL~s 1008 (1267)
.++++|+||+|++++|+.|++.+.+|+.+++.|.+.+. .|++|+|||||||||||++|+|+|++++++|+.++++++.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHHC
T ss_conf 99998888516999999999999998739999986799-98865888898998889999999998679969993304431
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0027518999999999871299179993521221389998--43799999988655421688656777689999439999
Q 000823 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1267)
Q Consensus 1009 ~~~Ge~ek~I~~iF~~A~k~~PsIIiIDEID~L~~~r~~~--~~~~a~~~il~~LL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1267)
+|+|++++.++.+|..|+..+||||||||||.+++.|... .......+++++||..||++.. ..+++||+|||+++
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~--~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ--STNVKVIMATNRAD 322 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS--SCSEEEEEEESCSS
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCHH
T ss_conf 4546059999999999997399746300224330355678788871899999999998438787--79979999619815
Q ss_pred CCCHHHHH--CCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99599982--035443699-999889999999998307999903099999982799899999977643447778753334
Q 000823 1087 DLDEAVIR--RLPRRLMVN-LPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLW 1163 (1267)
Q Consensus 1087 ~Ld~aLlr--RFd~~I~v~-~Pd~eeR~eILk~ll~k~~l~~didl~~LA~~TeGySg~DLk~LI~~a~li~~v~~~~~l 1163 (1267)
.||++++| ||++.|+|+ +|+.++|..||+.++.+..+..++++..||..|+||||+||+
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~------------------ 384 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIA------------------ 384 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHH------------------
T ss_pred HCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHH------------------
T ss_conf 56966636875159998199999999999999985579999635899999777998899999------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCCC
Q ss_conf 56799999999999999999999999999899999886419999987798887666799999999980-346565
Q 000823 1164 SDWLLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV-CASVSS 1237 (1267)
Q Consensus 1164 ~~~i~~~l~~l~~Lc~~Aa~~aire~l~~~k~~~~~a~~e~~~~~~~~~~~~~~~Vt~eDf~~Al~~v-~pS~s~ 1237 (1267)
++|++|++.++++ +...|+++||.+|+..+ .++...
T Consensus 385 ------------~l~~eA~~~a~r~--------------------------~~~~i~~~d~~~A~~~~~~~~~~~ 421 (428)
T 4b4t_K 385 ------------AIMQEAGLRAVRK--------------------------NRYVILQSDLEEAYATQVKTDNTV 421 (428)
T ss_dssp ------------HHHHHHHHHHHHT--------------------------TCSSBCHHHHHHHHHHHSCSCCCS
T ss_pred ------------HHHHHHHHHHHHC--------------------------CCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf ------------9999999999987--------------------------998779999999999761766895
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=313.01 Aligned_cols=290 Identities=38% Similarity=0.646 Sum_probs=242.9
Q ss_pred CCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEEEECCCCC
Q ss_conf 987561000140999999999985725762566308988898249999589983999999999991-9956996111000
Q 000823 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSIT 1007 (1267)
Q Consensus 929 ~~~vt~ddI~Gle~vk~~L~e~I~~pl~~~e~f~k~~~~kP~~gILL~GPpGTGKT~LAkAIA~el-g~~vi~Id~seL~ 1007 (1267)
.+.++|+|++|++++++.|++.+.+|+.+++.|... ..|++++||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHCC--CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHH
T ss_conf 999998873498999999999999987698977178--899954999899996099999999998089967998749977
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 10027518999999999871299179993521221389998437999999886554216886567776899994399999
Q 000823 1008 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1087 (1267)
Q Consensus 1008 s~~~Ge~ek~I~~iF~~A~k~~PsIIiIDEID~L~~~r~~~~~~~a~~~il~~LL~~ldgl~~~~~~~VlVIaTTN~p~~ 1087 (1267)
+.+.|+.++.++.+|..++...|+||||||||.+.+.+... ......+++++++..++++... ..+++||++||.++.
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~atn~~~~ 161 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWV 161 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSSC-CTTEEEEEEESCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCC-CCHHHHHHHHHHHHHHHCCCCC-CCCEEEEEECCCCCC
T ss_conf 64311999999999999986299589960478753556665-3358999999999997434566-888799996698565
Q ss_pred CCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9599982035443699999889999999998307999-903099999982799899999977643447778753334567
Q 000823 1088 LDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKVIFLSHSLICNVLLLNLWSDW 1166 (1267)
Q Consensus 1088 Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~ll~k~~l~-~didl~~LA~~TeGySg~DLk~LI~~a~li~~v~~~~~l~~~ 1166 (1267)
++++++|||+..+++++|+.++|.+|++.++...... .+.++..|+..++||+|+||.
T Consensus 162 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~--------------------- 220 (322)
T 1xwi_A 162 LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADIS--------------------- 220 (322)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHH---------------------
T ss_pred CCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHH---------------------
T ss_conf 89999931676899579699999999999972178889999999999976999999999---------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------CCCCCCC---------------CCCCCCCCCH
Q ss_conf 99999999999999999999999999899999886419----------9999877---------------9888766679
Q 000823 1167 LLVYLIVLQNLCVTAAHRPIKEILEKEKKERAAAMAEG----------KPAPALS---------------GCADIRPLNM 1221 (1267)
Q Consensus 1167 i~~~l~~l~~Lc~~Aa~~aire~l~~~k~~~~~a~~e~----------~~~~~~~---------------~~~~~~~Vt~ 1221 (1267)
.+|++|+..++++.+....... ..... ...++.. ......+|++
T Consensus 221 ---------~l~~~A~~~a~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 289 (322)
T 1xwi_A 221 ---------IIVRDALMQPVRKVQSATHFKK--VRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSM 289 (322)
T ss_dssp ---------HHHHHHHTHHHHHHHHCSEEEE--EEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCH
T ss_conf ---------9999999999999986455554--21443333100000002556544410000121236500035787089
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 99999999803465654333135579999428998
Q 000823 1222 DDFKYAHERVCASVSSESVNMSELLQWNELYGEGG 1256 (1267)
Q Consensus 1222 eDf~~Al~~v~pS~s~~~~~~~~~v~W~digG~~~ 1256 (1267)
+||..|++.++||++.+. +..+.+|++.||.+|
T Consensus 290 ~df~~al~~~~ps~~~~~--~~~~~~~~~~~~~~~ 322 (322)
T 1xwi_A 290 SDMLRSLSNTKPTVNEHD--LLKLKKFTEDFGQEG 322 (322)
T ss_dssp HHHHHHHHTCCCSCCHHH--HHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHCCCCCCHHH--HHHHHHHHHHHCCCC
T ss_conf 999999986799999999--999999999974699
Done!