BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000824
(1266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 139 bits (350), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 129/242 (53%), Gaps = 15/242 (6%)
Query: 598 EQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDE 657
+ +RG +G + F+ + + E L QE ++ S TI+V+GK GVGKS+T+NSI E
Sbjct: 6 QTVRGWSG--INTFAPATQTKLLELLGNLKQEDVN-SLTILVMGKGGVGKSSTVNSIIGE 62
Query: 658 VKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTP 717
FQ + V + G + +IDTPGL+ N+ L+ +K F+
Sbjct: 63 RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI---EGGYINDMALNIIKSFLLDKT 119
Query: 718 PDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPDGPNGTASSY 777
D++LY+DRLD D D + + ITD FG IW AIV LTHA +PPDG Y
Sbjct: 120 IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG-----LPY 174
Query: 778 DMFVTQRSHVVQQAIRQAAG---DMRLMN-PVSLVENHSACRTNRAGQRVLPNGQVWKPH 833
D F ++RS + Q +R A D + + PV L+EN C N + ++VLPNG W PH
Sbjct: 175 DEFFSKRSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPH 234
Query: 834 LL 835
L+
Sbjct: 235 LV 236
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 126/243 (51%), Gaps = 13/243 (5%)
Query: 597 AEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFD 656
++Q R + F+ + + E L QE ++ S TI+V GK GVGKS+T+NSI
Sbjct: 3 SQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVN-SLTILVXGKGGVGKSSTVNSIIG 61
Query: 657 EVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKT 716
E FQ + V + G + +IDTPGL+ N+ L+ +K F+
Sbjct: 62 ERVVSISPFQSEGPRPVXVSRSRAGFTLNIIDTPGLIEG---GYINDXALNIIKSFLLDK 118
Query: 717 PPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPDGPNGTASS 776
D++LY+DRLD D D + + ITD FG IW AIV LTHA +PPDG
Sbjct: 119 TIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG-----LP 173
Query: 777 YDMFVTQRSHVVQQAIRQAAG---DMRLMN-PVSLVENHSACRTNRAGQRVLPNGQVWKP 832
YD F ++RS + Q +R A D + + PV L+EN C N + ++VLPNG W P
Sbjct: 174 YDEFFSKRSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIP 233
Query: 833 HLL 835
HL+
Sbjct: 234 HLV 236
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 117/232 (50%), Gaps = 26/232 (11%)
Query: 621 EQLEAAGQEPL-DF----------SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGT 669
+Q AA QE L +F S T++VLGK GVGKS+T+NS+ E FQ
Sbjct: 12 QQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG 71
Query: 670 KKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDM 729
+ V T+ G + +IDTPGL+ + N + L +K F+ D++LY+DRLD+
Sbjct: 72 LRPVMVSRTMGGFTINIIDTPGLVEA---GYVNHQALELIKGFLVNRTIDVLLYVDRLDV 128
Query: 730 QNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQ 789
D D ++ IT FG IW ++VLTHA +PPD SY+ F ++RS +
Sbjct: 129 YRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPD-----ELSYETFSSKRSDSLL 183
Query: 790 QAIRQAAGDMRLMN------PVSLVENHSACRTNRAGQRVLPNGQVWKPHLL 835
+ IR A MR V EN C N ++ LPNG+ W P+L+
Sbjct: 184 KTIR-AGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLV 234
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 117/232 (50%), Gaps = 26/232 (11%)
Query: 621 EQLEAAGQEPL-DF----------SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGT 669
+Q AA QE L +F S T++VLGK GVGKS+T+NS+ E FQ
Sbjct: 12 QQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG 71
Query: 670 KKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDM 729
+ V T+ G + +IDTPGL+ + N + L +K F+ D++LY+DRLD+
Sbjct: 72 LRPVMVSRTMGGFTINIIDTPGLVEA---GYVNHQALELIKGFLVNRTIDVLLYVDRLDV 128
Query: 730 QNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQ 789
D D ++ IT FG IW ++VLTHA +PPD SY+ F ++RS +
Sbjct: 129 YRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPD-----ELSYETFSSKRSDELL 183
Query: 790 QAIRQAAGDMRLMN------PVSLVENHSACRTNRAGQRVLPNGQVWKPHLL 835
+ IR A MR V EN C N ++ LPNG+ W P+L+
Sbjct: 184 KTIR-AGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLV 234
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 117/232 (50%), Gaps = 26/232 (11%)
Query: 621 EQLEAAGQEPL-DF----------SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGT 669
+Q AA QE L +F S T++VLGK GVGKS+T+NS+ E FQ
Sbjct: 12 QQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG 71
Query: 670 KKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDM 729
+ V T+ G + +IDTPGL+ + N + L +K F+ D++LY+DRLD+
Sbjct: 72 LRPVMVSRTMGGFTINIIDTPGLVEA---GYVNHQALELIKGFLVNRTIDVLLYVDRLDV 128
Query: 730 QNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQ 789
D D ++ IT FG IW ++VLTHA +PPD SY+ F ++RS +
Sbjct: 129 YAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPD-----ELSYETFSSKRSDSLL 183
Query: 790 QAIRQAAGDMRLMN------PVSLVENHSACRTNRAGQRVLPNGQVWKPHLL 835
+ IR A MR V EN C N ++ LPNG+ W P+L+
Sbjct: 184 KTIR-AGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLV 234
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 117/232 (50%), Gaps = 26/232 (11%)
Query: 621 EQLEAAGQEPL-DF----------SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGT 669
+Q AA QE L +F S T++VLGK GVGKS+T+NS+ E FQ
Sbjct: 11 QQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG 70
Query: 670 KKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDM 729
+ V T+ G + +IDTPGL+ + N + L +K F+ D++LY+DRLD+
Sbjct: 71 LRPVMVSRTMGGFTINIIDTPGLVEA---GYVNHQALELIKGFLVNRTIDVLLYVDRLDV 127
Query: 730 QNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQ 789
D D ++ IT FG IW ++VLTHA +PPD SY+ F ++RS +
Sbjct: 128 YAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPD-----ELSYETFSSKRSDSLL 182
Query: 790 QAIRQAAGDMRLMN------PVSLVENHSACRTNRAGQRVLPNGQVWKPHLL 835
+ IR A MR V EN C N ++ LPNG+ W P+L+
Sbjct: 183 KTIR-AGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLV 233
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 637 IMVLGKTGVGKSATINSIFDEVKFGTD-AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPS 695
I+++GKTG GKSA NSI + F + Q TK G+ ++ +IDTP + S
Sbjct: 25 IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMF-S 83
Query: 696 WSDQRQNEKILHSVKR-FIKKTP-PDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWF 753
W D E + V+R ++ P P ++L + +L D + + +IFG
Sbjct: 84 WKD--HCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTS--QDQQAAQRVKEIFGEDAMG 139
Query: 754 NAIVVLTH 761
+ IV+ TH
Sbjct: 140 HTIVLFTH 147
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 637 IMVLGKTGVGKSATINSIFDEVKFGTD-AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPS 695
I+++GKTG GKSA NSI + F + Q TK G+ ++ +IDTP + S
Sbjct: 5 IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMF-S 63
Query: 696 WSDQRQNEKILHSVKR-FIKKTP-PDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWF 753
W D E + V+R ++ P P ++L + +L D + + +IFG
Sbjct: 64 WKD--HCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTS--QDQQAAQRVKEIFGEDAMG 119
Query: 754 NAIVVLTH 761
+ IV+ TH
Sbjct: 120 HTIVLFTH 127
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 637 IMVLGKTGVGKSATINSIFDEVKFGTD-AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPS 695
I+++GKTG GKSA NSI + F + Q TK G+ ++ +IDTP + S
Sbjct: 8 IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMF-S 66
Query: 696 WSDQRQNEKILHSVKR-FIKKTP-PDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWF 753
W D E + V+R ++ P P ++L + +L D + + +IFG
Sbjct: 67 WKD--HCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTS--QDQQAAQRVKEIFGEDAMG 122
Query: 754 NAIVVLTH 761
+ IV+ TH
Sbjct: 123 HTIVLFTH 130
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 89/214 (41%), Gaps = 28/214 (13%)
Query: 628 QEPLDFSCTIMVLGKTGVGKSATINSIFDEVKF--GTDAFQMGTKKVQDVVGTVQGIKVR 685
QEP + I+++GKTG GKSAT NSI F GT A + TKK + + + ++
Sbjct: 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSI-TKKCEKRSSSWKETELV 81
Query: 686 VIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPD-----IVLYLDRLDMQNRDFSDMPLL 740
V+DTPG+ + + N + + R I T P +V+ L R + ++
Sbjct: 82 VVDTPGIFDT---EVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATE---- 134
Query: 741 RTITDIFGPSIWFNAIVVL--------THAASAPPDGPNGTASSYDMFVTQRSHVVQQAI 792
I FG I++ T+ + P D+F + + +A
Sbjct: 135 -KILKXFGERARSFXILIFTRKDDLGDTNLHDYLREAPEDIQDLXDIFGDRYCALNNKAT 193
Query: 793 --RQAAGDMRLMNPVSLV--ENHSACRTNRAGQR 822
Q A +L+ + V EN C TNR QR
Sbjct: 194 GAEQEAQRAQLLGLIQRVVRENKEGCYTNRXYQR 227
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 625 AAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTD-AFQMGTKKVQDVVGTVQGIK 683
A GQ I+++GKTG GKSA NSI + F + Q TK G+ +
Sbjct: 13 AKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE 72
Query: 684 VRVIDTPGLLPSWSDQRQNEKILHSVKR-FIKKTP-PDIVLYLDRLDMQNRDFSDMPLLR 741
+ +IDTP SW D E + V+R ++ P P ++L + +L D +
Sbjct: 73 IVIIDTPDXF-SWKD--HCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTS--QDQQAAQ 127
Query: 742 TITDIFGPSIWFNAIVVLTH 761
+ +IFG + IV+ TH
Sbjct: 128 RVKEIFGEDAXGHTIVLFTH 147
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVV----GTVQ----GIKV 684
F T+MV+G++G+GKS INS+F + +K++ V TV+ G+K+
Sbjct: 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 685 R--VIDTPG 691
R V+DTPG
Sbjct: 96 RLTVVDTPG 104
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVV----GTVQ----GIKV 684
F T+MV+G++G+GKS INS+F + +K++ V TV+ G+K+
Sbjct: 4 FEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKL 63
Query: 685 R--VIDTPG 691
R V+DTPG
Sbjct: 64 RLTVVDTPG 72
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 19/147 (12%)
Query: 625 AAGQEPLDF----SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGT-- 678
++G+E L F + ++++G+TG GKSAT NSI + +F + ++G V T
Sbjct: 8 SSGRENLYFQGESTRRLILVGRTGAGKSATGNSILGQRRFFS---RLGATSVTRACTTGS 64
Query: 679 --VQGIKVRVIDTPGLLPSWSDQRQ--NEKILHSVKRFIKKTP-PDIVLYLDRLDMQNRD 733
V V+DTP + S + E+ H ++ P P +L + +L
Sbjct: 65 RRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC---YLLSAPGPHALLLVTQLGRFTAQ 121
Query: 734 FSDMPLLRTITDIFGPSIWFNAIVVLT 760
D +R + D+FG + ++V T
Sbjct: 122 --DQQAVRQVRDMFGEDVLKWMVIVFT 146
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 14/91 (15%)
Query: 633 FSCTIMVLGKTGVGKSATINSIF-DEVKFGTDAFQMGTKKVQDV----VGTVQ---GIKV 684
F IMV+G++G+GKS +N++F +V ++ K + V +G V G+K+
Sbjct: 1 FDFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKM 60
Query: 685 R--VIDTPGLLPSWSDQRQNEKILHSVKRFI 713
+ VIDTPG DQ NE ++++I
Sbjct: 61 KLTVIDTPGF----GDQINNENCWEPIEKYI 87
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVV----GTVQ----GIKV 684
F T+ V+G++G+GKS INS+F + +K++ V TV+ G+K+
Sbjct: 17 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 685 R--VIDTPG 691
R V+DTPG
Sbjct: 77 RLTVVDTPG 85
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVV----GTVQ----GIKV 684
F T+ V+G++G+GKS INS+F + +K++ V TV+ G+K+
Sbjct: 36 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 685 R--VIDTPG 691
R V+DTPG
Sbjct: 96 RLTVVDTPG 104
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTD----------AFQMGTKKVQDVVGTVQGI 682
F T+MV+G++G+GKS INS+F + + Q+ KV G VQ +
Sbjct: 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 89
Query: 683 KVRVIDTPGL 692
+ ++DTPG
Sbjct: 90 -LTIVDTPGF 98
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTD----------AFQMGTKKVQDVVGTVQGI 682
F T+MV+G++G+GKS INS+F + + Q+ KV G VQ +
Sbjct: 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQ-L 65
Query: 683 KVRVIDTPGL 692
+ ++DTPG
Sbjct: 66 LLTIVDTPGF 75
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTD----------AFQMGTKKVQDVVGTVQGI 682
F T+MV+G++G+GKS INS+F + + Q+ KV G VQ +
Sbjct: 2 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQ-L 60
Query: 683 KVRVIDTPGL 692
+ ++DTPG
Sbjct: 61 LLTIVDTPGF 70
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 631 LDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTP 690
L+ ++++GK VGKS +N + +E + T+ V ++GI R++DT
Sbjct: 240 LNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTA 299
Query: 691 GLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYL 724
G+ +D + I +++ K DIVL++
Sbjct: 300 GVRSETNDLVERLGIERTLQEIEK---ADIVLFV 330
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 31.2 bits (69), Expect = 4.0, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 627 GQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDA-----FQMGTKKVQDVVGTVQG 681
G E DF +V+G G GKS ++ F E KF D+ + G+K + VG +
Sbjct: 1 GSETYDFLFKFLVIGNAGTGKSCLLHQ-FIEKKFKDDSNHTIGVEFGSKIIN--VGG-KY 56
Query: 682 IKVRVIDTPGL 692
+K+++ DT GL
Sbjct: 57 VKLQIWDTAGL 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.130 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,436,100
Number of Sequences: 62578
Number of extensions: 1387583
Number of successful extensions: 2606
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2579
Number of HSP's gapped (non-prelim): 29
length of query: 1266
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1156
effective length of database: 8,089,757
effective search space: 9351759092
effective search space used: 9351759092
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)