Query 000824
Match_columns 1266
No_of_seqs 514 out of 2663
Neff 4.0
Searched_HMMs 46136
Date Tue Apr 2 00:09:44 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00993 3a0901s04IAP86 chlor 100.0 3E-221 6E-226 1915.0 68.9 747 511-1263 1-757 (763)
2 PF11886 DUF3406: Domain of un 100.0 2E-126 4E-131 1016.0 26.0 272 988-1259 1-272 (273)
3 cd01853 Toc34_like Toc34-like 100.0 1.1E-37 2.4E-42 338.0 23.3 241 611-851 8-248 (249)
4 TIGR00991 3a0901s02IAP34 GTP-b 100.0 1.7E-35 3.7E-40 329.1 22.5 261 617-889 22-290 (313)
5 PF04548 AIG1: AIG1 family; I 99.9 2.6E-24 5.6E-29 227.1 13.0 157 635-803 1-161 (212)
6 cd01852 AIG1 AIG1 (avrRpt2-ind 99.9 6.5E-23 1.4E-27 212.3 16.2 158 635-804 1-161 (196)
7 COG0486 ThdF Predicted GTPase 99.8 2.2E-20 4.8E-25 215.7 13.7 220 528-768 112-340 (454)
8 TIGR00450 mnmE_trmE_thdF tRNA 99.7 7.7E-17 1.7E-21 188.4 13.9 217 529-766 103-324 (442)
9 PRK05291 trmE tRNA modificatio 99.7 1.1E-16 2.4E-21 187.2 13.9 216 529-766 111-335 (449)
10 COG3596 Predicted GTPase [Gene 99.6 4.5E-15 9.7E-20 163.2 10.9 223 633-881 38-278 (296)
11 PF01926 MMR_HSR1: 50S ribosom 99.5 5.8E-14 1.2E-18 133.6 12.6 116 636-761 1-116 (116)
12 KOG1191 Mitochondrial GTPase [ 99.5 6.8E-14 1.5E-18 162.6 13.8 226 528-767 162-404 (531)
13 COG1160 Predicted GTPases [Gen 99.5 3E-14 6.5E-19 165.1 8.5 212 546-767 90-304 (444)
14 COG1159 Era GTPase [General fu 99.5 2E-13 4.4E-18 151.6 13.6 125 633-767 5-129 (298)
15 PRK12727 flagellar biosynthesi 99.5 1E-12 2.3E-17 156.0 17.2 205 547-766 252-498 (559)
16 cd01850 CDC_Septin CDC/Septin. 99.4 5E-13 1.1E-17 147.8 13.1 125 633-767 3-158 (276)
17 PF02421 FeoB_N: Ferrous iron 99.4 6.6E-13 1.4E-17 136.7 11.6 121 635-768 1-121 (156)
18 COG1160 Predicted GTPases [Gen 99.4 1E-12 2.2E-17 152.6 13.0 123 635-766 4-126 (444)
19 cd04164 trmE TrmE (MnmE, ThdF, 99.4 7.1E-12 1.5E-16 121.3 14.7 122 634-767 1-122 (157)
20 cd04163 Era Era subfamily. Er 99.4 9.8E-12 2.1E-16 120.0 15.5 122 634-765 3-124 (168)
21 PRK14722 flhF flagellar biosyn 99.4 1.3E-12 2.7E-17 150.5 10.5 202 557-766 43-295 (374)
22 KOG1547 Septin CDC10 and relat 99.4 2E-12 4.3E-17 140.0 11.3 129 631-769 43-201 (336)
23 TIGR00436 era GTP-binding prot 99.4 6.6E-12 1.4E-16 137.5 14.4 120 636-766 2-121 (270)
24 COG1419 FlhF Flagellar GTP-bin 99.4 7.4E-13 1.6E-17 152.5 7.2 176 581-766 150-352 (407)
25 PF00735 Septin: Septin; Inte 99.4 1.2E-12 2.6E-17 145.5 8.7 126 633-768 3-158 (281)
26 TIGR03598 GTPase_YsxC ribosome 99.4 1.1E-11 2.3E-16 126.8 14.8 126 632-766 16-143 (179)
27 cd01894 EngA1 EngA1 subfamily. 99.4 9E-12 2E-16 120.9 13.6 119 638-766 1-119 (157)
28 COG5019 CDC3 Septin family pro 99.3 4.5E-12 9.8E-17 144.1 12.5 128 632-769 21-179 (373)
29 PRK00089 era GTPase Era; Revie 99.3 9.8E-12 2.1E-16 136.7 14.6 123 633-765 4-126 (292)
30 PRK14721 flhF flagellar biosyn 99.3 6.2E-12 1.4E-16 146.7 13.1 195 558-766 102-340 (420)
31 cd01895 EngA2 EngA2 subfamily. 99.3 3.4E-11 7.4E-16 117.9 14.4 126 634-766 2-127 (174)
32 PRK12298 obgE GTPase CgtA; Rev 99.3 7.5E-11 1.6E-15 136.7 19.0 125 636-766 161-289 (390)
33 PRK05703 flhF flagellar biosyn 99.3 2E-11 4.4E-16 142.7 13.1 200 553-766 128-371 (424)
34 COG1084 Predicted GTPase [Gene 99.3 1.5E-10 3.3E-15 130.4 19.3 126 634-767 168-295 (346)
35 COG0218 Predicted GTPase [Gene 99.3 4.2E-11 9.1E-16 127.5 14.1 126 633-767 23-150 (200)
36 PRK14723 flhF flagellar biosyn 99.3 2.5E-11 5.4E-16 149.5 14.2 199 556-766 91-337 (767)
37 TIGR03594 GTPase_EngA ribosome 99.3 3.9E-11 8.5E-16 138.3 14.8 121 636-766 1-121 (429)
38 PRK06995 flhF flagellar biosyn 99.3 4E-11 8.6E-16 142.0 14.8 195 557-766 165-405 (484)
39 cd01898 Obg Obg subfamily. Th 99.2 4.2E-11 9.1E-16 118.8 10.7 125 636-766 2-128 (170)
40 TIGR03594 GTPase_EngA ribosome 99.2 5E-11 1.1E-15 137.4 12.2 126 633-765 171-296 (429)
41 cd01879 FeoB Ferrous iron tran 99.2 1.2E-10 2.6E-15 113.7 11.8 115 639-766 1-115 (158)
42 KOG2655 Septin family protein 99.2 6.9E-11 1.5E-15 135.1 11.5 128 632-769 19-175 (366)
43 cd01897 NOG NOG1 is a nucleola 99.2 1.8E-10 4E-15 114.3 13.1 124 635-766 1-127 (168)
44 PRK00093 GTP-binding protein D 99.2 2.1E-10 4.6E-15 132.8 15.6 124 633-765 172-297 (435)
45 cd04104 p47_IIGP_like p47 (47- 99.2 1.3E-10 2.9E-15 121.5 12.5 118 635-768 2-123 (197)
46 PRK00093 GTP-binding protein D 99.2 1.9E-10 4.2E-15 133.1 14.9 121 635-765 2-122 (435)
47 TIGR03156 GTP_HflX GTP-binding 99.2 8.7E-10 1.9E-14 126.3 19.9 125 634-766 189-315 (351)
48 PRK12723 flagellar biosynthesi 99.2 7.7E-11 1.7E-15 136.6 11.0 196 556-766 84-326 (388)
49 cd01881 Obg_like The Obg-like 99.2 7.2E-11 1.6E-15 117.2 9.1 122 639-766 1-134 (176)
50 PRK00454 engB GTP-binding prot 99.2 4.6E-10 9.9E-15 114.6 15.0 126 632-766 22-149 (196)
51 PRK15494 era GTPase Era; Provi 99.2 2.9E-10 6.3E-15 129.3 14.6 122 634-765 52-173 (339)
52 PRK03003 GTP-binding protein D 99.2 2.2E-10 4.8E-15 135.1 14.0 127 633-766 210-336 (472)
53 cd00880 Era_like Era (E. coli 99.1 3.9E-10 8.4E-15 106.9 12.2 118 639-767 1-119 (163)
54 cd01876 YihA_EngB The YihA (En 99.1 6E-10 1.3E-14 108.2 13.5 122 637-767 2-125 (170)
55 PRK03003 GTP-binding protein D 99.1 6.9E-10 1.5E-14 131.1 16.7 122 634-765 38-159 (472)
56 PRK12726 flagellar biosynthesi 99.1 8.5E-11 1.8E-15 135.7 8.5 196 555-766 117-356 (407)
57 cd04171 SelB SelB subfamily. 99.1 9.4E-10 2E-14 107.8 14.4 114 635-765 1-117 (164)
58 KOG1490 GTP-binding protein CR 99.1 2.8E-09 6.1E-14 124.8 19.0 271 633-936 167-452 (620)
59 cd01878 HflX HflX subfamily. 99.1 1.1E-09 2.5E-14 113.5 13.6 123 635-766 42-167 (204)
60 PRK09518 bifunctional cytidyla 99.1 7.7E-10 1.7E-14 136.7 14.0 126 634-766 450-575 (712)
61 PRK09518 bifunctional cytidyla 99.1 1.3E-09 2.7E-14 134.8 15.9 122 634-765 275-396 (712)
62 PRK12299 obgE GTPase CgtA; Rev 99.1 1.2E-09 2.7E-14 124.4 13.6 124 635-766 159-285 (335)
63 PRK04213 GTP-binding protein; 99.0 3.3E-09 7.2E-14 109.6 14.1 123 633-765 8-143 (201)
64 cd00881 GTP_translation_factor 99.0 3.6E-09 7.7E-14 106.1 13.3 113 636-766 1-128 (189)
65 PRK11058 GTPase HflX; Provisio 99.0 2.1E-09 4.6E-14 126.0 13.2 123 635-765 198-322 (426)
66 cd01887 IF2_eIF5B IF2/eIF5B (i 99.0 4.3E-09 9.4E-14 104.1 13.4 111 636-765 2-115 (168)
67 PF00448 SRP54: SRP54-type pro 99.0 1.3E-10 2.9E-15 123.2 2.4 119 634-766 1-154 (196)
68 PRK12297 obgE GTPase CgtA; Rev 99.0 3.1E-09 6.7E-14 124.7 13.5 124 635-764 159-286 (424)
69 TIGR02729 Obg_CgtA Obg family 99.0 2.8E-09 6E-14 121.2 12.5 126 635-766 158-287 (329)
70 KOG1423 Ras-like GTPase ERA [C 99.0 3E-09 6.4E-14 119.1 12.2 127 633-767 71-200 (379)
71 cd01861 Rab6 Rab6 subfamily. 99.0 6.6E-09 1.4E-13 102.3 13.4 115 635-765 1-118 (161)
72 PF00350 Dynamin_N: Dynamin fa 99.0 2.2E-09 4.9E-14 107.5 9.8 113 637-762 1-168 (168)
73 PRK12296 obgE GTPase CgtA; Rev 98.9 6.8E-09 1.5E-13 123.8 14.6 127 633-765 158-297 (500)
74 cd00154 Rab Rab family. Rab G 98.9 6.3E-09 1.4E-13 100.0 11.8 115 635-765 1-118 (159)
75 cd04119 RJL RJL (RabJ-Like) su 98.9 1.2E-08 2.7E-13 100.2 13.9 118 635-765 1-123 (168)
76 TIGR00231 small_GTP small GTP- 98.9 1.8E-08 3.8E-13 95.7 14.1 117 635-766 2-122 (161)
77 PRK11889 flhF flagellar biosyn 98.9 1.3E-09 2.7E-14 126.7 7.3 167 586-766 182-391 (436)
78 cd04166 CysN_ATPS CysN_ATPS su 98.9 5.3E-09 1.2E-13 110.5 11.4 113 636-765 1-143 (208)
79 cd04160 Arfrp1 Arfrp1 subfamil 98.9 6.7E-09 1.5E-13 103.1 11.4 115 636-765 1-120 (167)
80 PRK09554 feoB ferrous iron tra 98.9 1.2E-08 2.7E-13 127.2 15.3 121 634-766 3-126 (772)
81 cd04145 M_R_Ras_like M-Ras/R-R 98.9 1.5E-08 3.3E-13 99.8 13.0 116 634-765 2-120 (164)
82 cd01896 DRG The developmentall 98.9 1.8E-08 3.8E-13 109.2 14.4 87 636-728 2-88 (233)
83 cd04157 Arl6 Arl6 subfamily. 98.9 1.4E-08 3.1E-13 99.8 12.2 116 636-765 1-117 (162)
84 PF00009 GTP_EFTU: Elongation 98.9 1E-08 2.2E-13 106.1 11.3 114 634-765 3-135 (188)
85 smart00175 RAB Rab subfamily o 98.9 3E-08 6.6E-13 97.5 13.6 116 635-766 1-119 (164)
86 cd01891 TypA_BipA TypA (tyrosi 98.9 2.4E-08 5.2E-13 103.5 13.5 113 635-765 3-130 (194)
87 cd01890 LepA LepA subfamily. 98.9 2.8E-08 6.2E-13 100.0 13.4 112 636-765 2-132 (179)
88 cd04140 ARHI_like ARHI subfami 98.9 1.8E-08 3.9E-13 101.0 11.4 117 635-766 2-122 (165)
89 cd04123 Rab21 Rab21 subfamily. 98.8 3.8E-08 8.3E-13 96.1 13.4 116 635-766 1-119 (162)
90 cd04113 Rab4 Rab4 subfamily. 98.8 3.9E-08 8.5E-13 97.3 13.6 116 635-766 1-119 (161)
91 cd01860 Rab5_related Rab5-rela 98.8 2.6E-08 5.6E-13 98.4 12.2 116 635-765 2-119 (163)
92 cd01884 EF_Tu EF-Tu subfamily. 98.8 3E-08 6.5E-13 105.0 13.4 115 634-765 2-131 (195)
93 cd00876 Ras Ras family. The R 98.8 2.7E-08 5.8E-13 97.0 11.9 116 636-766 1-118 (160)
94 cd01889 SelB_euk SelB subfamil 98.8 2.8E-08 6.1E-13 102.8 12.7 114 635-766 1-134 (192)
95 cd04138 H_N_K_Ras_like H-Ras/N 98.8 3.7E-08 8E-13 96.2 12.9 116 635-766 2-120 (162)
96 cd01868 Rab11_like Rab11-like. 98.8 4.3E-08 9.3E-13 97.4 13.5 115 635-765 4-121 (165)
97 TIGR03499 FlhF flagellar biosy 98.8 5.7E-09 1.2E-13 116.1 7.7 131 557-687 106-257 (282)
98 cd01863 Rab18 Rab18 subfamily. 98.8 3.2E-08 6.9E-13 97.7 12.1 116 635-765 1-119 (161)
99 cd01864 Rab19 Rab19 subfamily. 98.8 6E-08 1.3E-12 96.8 14.0 118 634-766 3-122 (165)
100 cd04142 RRP22 RRP22 subfamily. 98.8 3.7E-08 8.1E-13 103.8 13.1 124 635-765 1-129 (198)
101 cd01866 Rab2 Rab2 subfamily. 98.8 3.6E-08 7.8E-13 99.3 12.4 117 634-766 4-123 (168)
102 cd04101 RabL4 RabL4 (Rab-like4 98.8 7.3E-08 1.6E-12 95.5 14.0 115 635-766 1-121 (164)
103 cd04136 Rap_like Rap-like subf 98.8 3.8E-08 8.1E-13 97.0 11.8 116 635-766 2-120 (163)
104 smart00178 SAR Sar1p-like memb 98.8 3.5E-08 7.7E-13 101.8 12.1 114 633-765 16-131 (184)
105 cd04154 Arl2 Arl2 subfamily. 98.8 4.7E-08 1E-12 98.9 12.7 114 633-765 13-128 (173)
106 smart00053 DYNc Dynamin, GTPas 98.8 8.9E-08 1.9E-12 105.1 15.6 79 682-767 125-207 (240)
107 cd00878 Arf_Arl Arf (ADP-ribos 98.8 4E-08 8.6E-13 97.0 11.6 114 636-766 1-114 (158)
108 cd04159 Arl10_like Arl10-like 98.8 4.5E-08 9.7E-13 94.4 11.6 111 637-765 2-114 (159)
109 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.8 8.3E-08 1.8E-12 95.7 13.7 115 635-765 3-120 (166)
110 PLN03118 Rab family protein; P 98.8 4.9E-08 1.1E-12 102.6 12.6 121 631-766 11-134 (211)
111 smart00173 RAS Ras subfamily o 98.8 3.9E-08 8.5E-13 97.4 11.0 116 635-766 1-119 (164)
112 cd04106 Rab23_lke Rab23-like s 98.8 8.3E-08 1.8E-12 94.7 13.1 115 635-766 1-120 (162)
113 cd01862 Rab7 Rab7 subfamily. 98.8 1.2E-07 2.5E-12 94.3 14.2 118 635-766 1-123 (172)
114 COG0370 FeoB Fe2+ transport sy 98.8 3.3E-08 7.1E-13 120.0 12.1 122 635-769 4-125 (653)
115 cd04156 ARLTS1 ARLTS1 subfamil 98.8 9.2E-08 2E-12 94.4 13.3 111 636-765 1-114 (160)
116 COG2262 HflX GTPases [General 98.8 2E-07 4.4E-12 108.1 17.6 125 635-767 193-319 (411)
117 cd01886 EF-G Elongation factor 98.8 7.4E-08 1.6E-12 106.9 13.6 112 636-765 1-129 (270)
118 cd00157 Rho Rho (Ras homology) 98.8 2.2E-08 4.9E-13 99.3 8.6 116 635-767 1-119 (171)
119 cd00879 Sar1 Sar1 subfamily. 98.8 7.3E-08 1.6E-12 98.5 12.4 114 633-765 18-133 (190)
120 cd04155 Arl3 Arl3 subfamily. 98.7 1.1E-07 2.3E-12 95.3 13.0 115 633-766 13-129 (173)
121 cd01867 Rab8_Rab10_Rab13_like 98.7 1.4E-07 3.1E-12 94.7 13.8 117 634-766 3-122 (167)
122 cd04114 Rab30 Rab30 subfamily. 98.7 1.7E-07 3.7E-12 93.3 14.2 117 634-766 7-126 (169)
123 cd01858 NGP_1 NGP-1. Autoanti 98.7 1.8E-08 3.9E-13 101.6 7.2 57 633-692 101-157 (157)
124 cd04112 Rab26 Rab26 subfamily. 98.7 1.3E-07 2.8E-12 97.9 13.3 116 635-766 1-120 (191)
125 cd01865 Rab3 Rab3 subfamily. 98.7 1.7E-07 3.7E-12 94.0 13.8 116 635-766 2-120 (165)
126 cd04109 Rab28 Rab28 subfamily. 98.7 1.5E-07 3.2E-12 99.6 14.0 117 635-765 1-122 (215)
127 cd04115 Rab33B_Rab33A Rab33B/R 98.7 2.4E-07 5.1E-12 93.6 14.8 118 635-766 3-123 (170)
128 cd04161 Arl2l1_Arl13_like Arl2 98.7 1.1E-07 2.4E-12 96.5 12.4 111 636-765 1-113 (167)
129 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.7 1.1E-07 2.3E-12 98.1 12.3 116 634-765 3-122 (183)
130 PRK12317 elongation factor 1-a 98.7 7.6E-08 1.7E-12 112.2 12.6 118 632-765 4-152 (425)
131 cd04118 Rab24 Rab24 subfamily. 98.7 2E-07 4.4E-12 95.7 14.3 116 635-766 1-119 (193)
132 cd04151 Arl1 Arl1 subfamily. 98.7 8.4E-08 1.8E-12 95.3 11.1 111 636-765 1-113 (158)
133 PRK12724 flagellar biosynthesi 98.7 3.5E-08 7.7E-13 115.6 9.7 171 582-766 155-373 (432)
134 cd00882 Ras_like_GTPase Ras-li 98.7 7.5E-08 1.6E-12 89.6 10.0 115 639-767 1-117 (157)
135 cd04124 RabL2 RabL2 subfamily. 98.7 1.8E-07 3.9E-12 93.8 13.4 113 635-764 1-116 (161)
136 cd04139 RalA_RalB RalA/RalB su 98.7 1.1E-07 2.3E-12 93.4 11.5 117 635-766 1-119 (164)
137 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.7 1.5E-07 3.2E-12 96.0 12.7 113 634-765 15-129 (174)
138 PRK05306 infB translation init 98.7 5E-07 1.1E-11 113.1 19.8 116 631-765 287-402 (787)
139 CHL00071 tufA elongation facto 98.7 1.2E-07 2.6E-12 110.5 13.5 118 632-766 10-142 (409)
140 cd04170 EF-G_bact Elongation f 98.7 1.3E-07 2.9E-12 103.6 13.0 112 636-765 1-129 (268)
141 PF08477 Miro: Miro-like prote 98.7 2E-08 4.4E-13 95.0 5.8 115 636-763 1-119 (119)
142 cd04175 Rap1 Rap1 subgroup. T 98.7 1.6E-07 3.4E-12 93.5 12.3 115 635-765 2-119 (164)
143 TIGR01425 SRP54_euk signal rec 98.7 1E-07 2.3E-12 112.1 12.7 119 634-766 100-253 (429)
144 cd04158 ARD1 ARD1 subfamily. 98.7 1.2E-07 2.6E-12 96.0 11.3 111 636-765 1-113 (169)
145 cd04125 RabA_like RabA-like su 98.7 1.6E-07 3.5E-12 96.4 12.1 115 635-765 1-118 (188)
146 cd04144 Ras2 Ras2 subfamily. 98.7 1.4E-07 3.1E-12 97.5 11.8 115 636-765 1-119 (190)
147 cd04122 Rab14 Rab14 subfamily. 98.7 2.9E-07 6.3E-12 92.2 13.6 115 635-766 3-121 (166)
148 cd04176 Rap2 Rap2 subgroup. T 98.7 1.1E-07 2.4E-12 94.3 10.4 116 635-765 2-119 (163)
149 TIGR02528 EutP ethanolamine ut 98.7 1.7E-07 3.8E-12 91.3 11.5 100 636-765 2-101 (142)
150 cd01893 Miro1 Miro1 subfamily. 98.7 1.9E-07 4.2E-12 93.9 11.7 112 636-766 2-117 (166)
151 cd04127 Rab27A Rab27a subfamil 98.7 3.5E-07 7.6E-12 92.4 13.6 118 634-766 4-134 (180)
152 cd04149 Arf6 Arf6 subfamily. 98.7 3.9E-07 8.4E-12 92.9 14.0 113 634-765 9-123 (168)
153 cd04116 Rab9 Rab9 subfamily. 98.6 4.5E-07 9.8E-12 90.8 14.2 119 634-765 5-127 (170)
154 cd04146 RERG_RasL11_like RERG/ 98.6 1.6E-07 3.5E-12 93.8 10.9 116 636-765 1-119 (165)
155 cd04137 RheB Rheb (Ras Homolog 98.6 2E-07 4.2E-12 94.4 11.3 117 635-766 2-120 (180)
156 cd04168 TetM_like Tet(M)-like 98.6 2.7E-07 5.8E-12 100.5 12.8 112 636-765 1-129 (237)
157 cd00877 Ran Ran (Ras-related n 98.6 1.8E-07 3.9E-12 94.8 10.3 114 635-765 1-117 (166)
158 cd04147 Ras_dva Ras-dva subfam 98.6 2.8E-07 6E-12 96.1 11.8 115 636-766 1-118 (198)
159 cd04108 Rab36_Rab34 Rab34/Rab3 98.6 5.1E-07 1.1E-11 92.2 13.5 115 636-765 2-119 (170)
160 cd04177 RSR1 RSR1 subgroup. R 98.6 2.3E-07 5.1E-12 93.3 10.8 117 635-766 2-120 (168)
161 PTZ00133 ADP-ribosylation fact 98.6 5.8E-07 1.3E-11 93.0 13.9 113 634-765 17-131 (182)
162 cd01888 eIF2_gamma eIF2-gamma 98.6 4.7E-07 1E-11 95.5 13.3 116 635-766 1-151 (203)
163 cd04178 Nucleostemin_like Nucl 98.6 1.2E-07 2.6E-12 98.9 8.6 59 631-692 114-172 (172)
164 cd04107 Rab32_Rab38 Rab38/Rab3 98.6 5E-07 1.1E-11 94.2 13.3 116 635-765 1-123 (201)
165 cd04169 RF3 RF3 subfamily. Pe 98.6 5.6E-07 1.2E-11 99.8 14.4 113 635-765 3-136 (267)
166 cd04110 Rab35 Rab35 subfamily. 98.6 5.2E-07 1.1E-11 94.3 13.3 116 634-766 6-124 (199)
167 cd04105 SR_beta Signal recogni 98.6 3.5E-07 7.5E-12 96.9 11.8 116 636-766 2-123 (203)
168 PLN03127 Elongation factor Tu; 98.6 4.2E-07 9.1E-12 107.6 13.8 119 631-766 58-191 (447)
169 PRK05124 cysN sulfate adenylyl 98.6 1E-06 2.2E-11 105.1 17.0 118 632-766 25-174 (474)
170 TIGR00437 feoB ferrous iron tr 98.6 3.4E-07 7.3E-12 111.7 13.2 113 641-766 1-113 (591)
171 PRK09866 hypothetical protein; 98.6 8.3E-07 1.8E-11 108.1 16.2 74 682-766 230-303 (741)
172 TIGR00064 ftsY signal recognit 98.6 1.1E-07 2.3E-12 105.9 8.1 120 633-766 71-231 (272)
173 PRK12735 elongation factor Tu; 98.6 5.9E-07 1.3E-11 104.4 14.4 119 630-765 8-141 (396)
174 smart00177 ARF ARF-like small 98.6 8.4E-07 1.8E-11 90.8 13.8 113 634-765 13-127 (175)
175 PLN03110 Rab GTPase; Provision 98.6 8.3E-07 1.8E-11 94.5 14.2 117 633-765 11-130 (216)
176 cd04148 RGK RGK subfamily. Th 98.6 5E-07 1.1E-11 96.8 12.5 116 635-766 1-120 (221)
177 PRK00007 elongation factor G; 98.6 6.1E-07 1.3E-11 111.2 14.7 114 635-766 11-141 (693)
178 cd01883 EF1_alpha Eukaryotic e 98.6 5.6E-07 1.2E-11 96.1 12.5 115 636-766 1-151 (219)
179 cd04150 Arf1_5_like Arf1-Arf5- 98.5 5.8E-07 1.3E-11 90.5 11.7 112 635-765 1-114 (159)
180 PRK10416 signal recognition pa 98.5 4.8E-07 1E-11 103.0 12.3 195 558-766 18-273 (318)
181 cd04132 Rho4_like Rho4-like su 98.5 6.1E-07 1.3E-11 91.6 11.9 114 635-766 1-119 (187)
182 cd04111 Rab39 Rab39 subfamily. 98.5 7.6E-07 1.7E-11 94.6 13.0 117 635-766 3-123 (211)
183 PTZ00369 Ras-like protein; Pro 98.5 4.5E-07 9.8E-12 93.7 10.9 117 634-765 5-123 (189)
184 PRK12739 elongation factor G; 98.5 6.3E-07 1.4E-11 111.0 13.8 115 634-766 8-139 (691)
185 TIGR00485 EF-Tu translation el 98.5 9.2E-07 2E-11 102.6 14.4 119 631-766 9-142 (394)
186 PRK15467 ethanolamine utilizat 98.5 6E-07 1.3E-11 91.4 11.3 102 636-765 3-104 (158)
187 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.5 1.3E-06 2.8E-11 89.4 13.8 116 634-765 2-120 (172)
188 TIGR00475 selB selenocysteine- 98.5 9.4E-07 2E-11 107.7 14.8 115 635-766 1-117 (581)
189 TIGR00484 EF-G translation elo 98.5 6.6E-07 1.4E-11 110.7 13.7 114 635-766 11-141 (689)
190 PF05049 IIGP: Interferon-indu 98.5 1.6E-07 3.4E-12 108.9 7.6 113 634-764 35-153 (376)
191 cd04117 Rab15 Rab15 subfamily. 98.5 1.6E-06 3.5E-11 87.2 13.9 115 635-765 1-118 (161)
192 PRK00049 elongation factor Tu; 98.5 1E-06 2.2E-11 102.7 14.1 117 631-765 9-141 (396)
193 PLN03108 Rab family protein; P 98.5 1.4E-06 3.1E-11 92.2 13.7 116 634-765 6-124 (210)
194 cd01900 YchF YchF subfamily. 98.5 3.8E-07 8.1E-12 102.0 9.5 85 637-727 1-102 (274)
195 cd04162 Arl9_Arfrp2_like Arl9/ 98.5 1.3E-06 2.7E-11 88.7 12.4 111 637-765 2-112 (164)
196 smart00174 RHO Rho (Ras homolo 98.5 4.2E-07 9.1E-12 91.2 8.9 112 637-766 1-116 (174)
197 cd04167 Snu114p Snu114p subfam 98.5 8.3E-07 1.8E-11 94.0 11.5 113 636-766 2-137 (213)
198 PRK12736 elongation factor Tu; 98.5 1.1E-06 2.5E-11 102.0 13.6 118 631-765 9-141 (394)
199 TIGR00487 IF-2 translation ini 98.5 2.7E-06 5.8E-11 104.0 17.3 115 632-765 85-200 (587)
200 PRK05506 bifunctional sulfate 98.5 1E-06 2.3E-11 108.0 13.3 119 631-766 21-171 (632)
201 cd01849 YlqF_related_GTPase Yl 98.5 2.3E-07 5.1E-12 93.6 6.4 57 633-692 99-155 (155)
202 PRK09601 GTP-binding protein Y 98.5 6.9E-07 1.5E-11 103.4 11.0 88 635-728 3-107 (364)
203 cd04165 GTPBP1_like GTPBP1-lik 98.5 1.5E-06 3.3E-11 94.1 13.0 115 636-766 1-152 (224)
204 PTZ00258 GTP-binding protein; 98.5 6.9E-07 1.5E-11 104.3 11.1 92 631-728 18-126 (390)
205 PLN00223 ADP-ribosylation fact 98.5 2.9E-06 6.3E-11 88.0 14.5 114 633-765 16-131 (181)
206 cd01892 Miro2 Miro2 subfamily. 98.5 1.7E-06 3.7E-11 88.2 12.6 115 634-765 4-121 (169)
207 cd04130 Wrch_1 Wrch-1 subfamil 98.5 9.7E-07 2.1E-11 89.4 10.6 114 635-766 1-118 (173)
208 TIGR02034 CysN sulfate adenyly 98.5 3E-06 6.6E-11 99.0 16.1 115 635-766 1-147 (406)
209 cd04135 Tc10 TC10 subfamily. 98.4 1.7E-06 3.6E-11 86.9 11.9 113 635-765 1-117 (174)
210 PF10662 PduV-EutP: Ethanolami 98.4 1E-06 2.2E-11 90.5 10.1 101 635-765 2-102 (143)
211 cd04143 Rhes_like Rhes_like su 98.4 1.5E-06 3.3E-11 95.2 12.3 117 635-766 1-127 (247)
212 cd04120 Rab12 Rab12 subfamily. 98.4 2.6E-06 5.6E-11 90.8 13.7 115 635-765 1-118 (202)
213 PLN03126 Elongation factor Tu; 98.4 2.8E-06 6.2E-11 101.5 15.2 119 631-766 78-211 (478)
214 cd01855 YqeH YqeH. YqeH is an 98.4 2.8E-07 6E-12 95.7 5.9 56 634-692 127-190 (190)
215 KOG3859 Septins (P-loop GTPase 98.4 2.6E-07 5.7E-12 102.6 5.8 124 631-767 39-191 (406)
216 PRK14974 cell division protein 98.4 2E-07 4.3E-12 106.8 5.0 120 633-766 139-293 (336)
217 CHL00189 infB translation init 98.4 2.1E-06 4.6E-11 107.0 13.8 115 632-765 242-360 (742)
218 TIGR00483 EF-1_alpha translati 98.4 5.3E-06 1.2E-10 97.1 16.3 117 633-765 6-154 (426)
219 cd01851 GBP Guanylate-binding 98.4 3.4E-06 7.4E-11 91.3 13.5 104 635-745 8-116 (224)
220 cd01874 Cdc42 Cdc42 subfamily. 98.4 3.9E-06 8.4E-11 86.3 13.2 113 635-765 2-118 (175)
221 PRK09563 rbgA GTPase YlqF; Rev 98.4 6.1E-07 1.3E-11 100.1 7.7 62 632-696 119-180 (287)
222 TIGR01394 TypA_BipA GTP-bindin 98.4 3E-06 6.5E-11 103.6 14.3 113 635-765 2-129 (594)
223 cd01885 EF2 EF2 (for archaea a 98.4 3.1E-06 6.6E-11 91.9 12.7 113 635-765 1-138 (222)
224 TIGR03596 GTPase_YlqF ribosome 98.4 7.9E-07 1.7E-11 98.6 8.3 60 633-695 117-176 (276)
225 cd01882 BMS1 Bms1. Bms1 is an 98.4 3.4E-06 7.4E-11 91.1 12.8 110 631-766 36-147 (225)
226 cd04121 Rab40 Rab40 subfamily. 98.4 5.6E-06 1.2E-10 87.2 13.8 116 633-765 5-123 (189)
227 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 6.6E-07 1.4E-11 89.2 6.4 55 636-693 85-139 (141)
228 PLN03071 GTP-binding nuclear p 98.4 2.4E-06 5.2E-11 91.4 11.1 116 632-765 11-130 (219)
229 cd01870 RhoA_like RhoA-like su 98.3 1.9E-06 4.2E-11 86.5 9.7 114 635-766 2-119 (175)
230 cd04134 Rho3 Rho3 subfamily. 98.3 2.5E-06 5.4E-11 88.5 10.7 114 635-766 1-118 (189)
231 PRK10512 selenocysteinyl-tRNA- 98.3 5E-06 1.1E-10 102.1 14.9 115 635-766 1-118 (614)
232 cd04126 Rab20 Rab20 subfamily. 98.3 3.3E-06 7.1E-11 91.4 11.8 113 635-766 1-114 (220)
233 TIGR03597 GTPase_YqeH ribosome 98.3 1.1E-06 2.4E-11 101.3 8.5 89 634-727 154-247 (360)
234 TIGR00491 aIF-2 translation in 98.3 3.6E-06 7.9E-11 102.8 13.3 114 634-766 4-135 (590)
235 cd01871 Rac1_like Rac1-like su 98.3 7.6E-06 1.7E-10 84.1 13.5 113 635-765 2-118 (174)
236 TIGR00157 ribosome small subun 98.3 1.4E-06 3E-11 95.5 8.4 80 635-718 121-210 (245)
237 PRK06731 flhF flagellar biosyn 98.3 1.2E-06 2.7E-11 97.8 7.9 167 586-766 17-225 (270)
238 COG1161 Predicted GTPases [Gen 98.3 8.2E-07 1.8E-11 101.1 6.6 61 632-695 130-190 (322)
239 PF03193 DUF258: Protein of un 98.3 2.4E-07 5.3E-12 96.5 2.2 59 635-696 36-101 (161)
240 cd01856 YlqF YlqF. Proteins o 98.3 1.2E-06 2.6E-11 90.0 7.1 58 633-693 114-171 (171)
241 PRK12288 GTPase RsgA; Reviewed 98.3 1.5E-06 3.3E-11 100.0 8.7 79 636-717 207-295 (347)
242 PRK10218 GTP-binding protein; 98.3 5.9E-06 1.3E-10 101.4 14.2 113 635-765 6-133 (607)
243 TIGR02836 spore_IV_A stage IV 98.3 3.3E-06 7.2E-11 99.0 10.8 127 634-766 17-194 (492)
244 cd04128 Spg1 Spg1p. Spg1p (se 98.3 9E-06 2E-10 84.5 12.7 113 635-765 1-117 (182)
245 PTZ00141 elongation factor 1- 98.3 1.9E-05 4.2E-10 93.7 16.9 117 632-764 5-157 (446)
246 cd04131 Rnd Rnd subfamily. Th 98.3 1E-05 2.2E-10 84.0 12.7 113 635-765 2-118 (178)
247 PRK12289 GTPase RsgA; Reviewed 98.2 1.5E-06 3.3E-11 100.2 7.2 57 636-695 174-237 (352)
248 KOG1489 Predicted GTP-binding 98.2 2.8E-06 6.1E-11 96.2 8.7 125 635-765 197-325 (366)
249 PF00071 Ras: Ras family; Int 98.2 1.4E-05 3E-10 79.2 12.7 115 636-766 1-118 (162)
250 PF00025 Arf: ADP-ribosylation 98.2 2.5E-06 5.5E-11 88.1 7.7 115 632-765 12-128 (175)
251 COG1100 GTPase SAR1 and relate 98.2 1.4E-05 3.1E-10 83.4 13.3 117 635-766 6-125 (219)
252 TIGR01393 lepA GTP-binding pro 98.2 1E-05 2.3E-10 99.0 14.0 113 635-765 4-135 (595)
253 cd01899 Ygr210 Ygr210 subfamil 98.2 5.7E-06 1.2E-10 94.4 10.6 86 637-728 1-110 (318)
254 PRK13351 elongation factor G; 98.2 9.3E-06 2E-10 100.6 13.2 114 634-765 8-138 (687)
255 cd04129 Rho2 Rho2 subfamily. 98.2 1E-05 2.2E-10 83.7 11.2 113 635-765 2-118 (187)
256 PRK00771 signal recognition pa 98.2 6.6E-06 1.4E-10 97.5 10.8 120 633-766 94-246 (437)
257 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.2 1.9E-05 4.2E-10 82.6 12.9 115 633-765 4-122 (182)
258 PRK04004 translation initiatio 98.2 1.6E-05 3.5E-10 97.3 13.8 114 633-765 5-136 (586)
259 TIGR00503 prfC peptide chain r 98.2 1.9E-05 4.1E-10 95.6 14.0 115 633-765 10-145 (527)
260 PRK09602 translation-associate 98.1 9.4E-06 2E-10 95.1 11.0 88 635-728 2-113 (396)
261 cd04102 RabL3 RabL3 (Rab-like3 98.1 2.8E-05 6.1E-10 83.3 13.7 117 635-766 1-143 (202)
262 PRK00098 GTPase RsgA; Reviewed 98.1 5.8E-06 1.3E-10 93.0 8.8 58 634-694 164-228 (298)
263 PTZ00416 elongation factor 2; 98.1 1.4E-05 3.1E-10 101.2 13.2 114 634-765 19-157 (836)
264 PRK00741 prfC peptide chain re 98.1 1.9E-05 4.2E-10 95.5 13.5 114 634-765 10-144 (526)
265 TIGR03680 eif2g_arch translati 98.1 1.7E-05 3.7E-10 92.8 12.7 118 633-766 3-148 (406)
266 PRK10867 signal recognition pa 98.1 8.4E-06 1.8E-10 96.5 10.1 119 634-766 100-254 (433)
267 PRK13796 GTPase YqeH; Provisio 98.1 4.7E-06 1E-10 96.4 7.6 58 634-694 160-222 (365)
268 cd01854 YjeQ_engC YjeQ/EngC. 98.1 6.8E-06 1.5E-10 92.0 8.4 80 635-717 162-251 (287)
269 COG0552 FtsY Signal recognitio 98.1 9.6E-07 2.1E-11 100.7 1.2 119 633-765 138-297 (340)
270 PRK05433 GTP-binding protein L 98.1 2.7E-05 5.9E-10 95.5 13.4 113 635-765 8-139 (600)
271 cd01875 RhoG RhoG subfamily. 98.1 4E-05 8.6E-10 80.0 12.6 114 634-765 3-120 (191)
272 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.1 2.9E-05 6.2E-10 85.0 12.0 114 633-765 12-130 (232)
273 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.1 2.7E-05 5.9E-10 84.5 11.6 113 635-765 2-118 (222)
274 PLN00116 translation elongatio 98.1 3.2E-05 7E-10 98.2 14.0 114 635-766 20-164 (843)
275 COG0536 Obg Predicted GTPase [ 98.1 1.3E-05 2.9E-10 91.7 9.5 123 636-766 161-289 (369)
276 COG1163 DRG Predicted GTPase [ 98.0 1E-05 2.2E-10 92.1 8.3 88 634-728 63-151 (365)
277 PTZ00132 GTP-binding nuclear p 98.0 3.7E-05 8E-10 81.2 11.9 115 633-765 8-126 (215)
278 PRK04000 translation initiatio 98.0 3.8E-05 8.3E-10 90.2 12.7 119 632-766 7-153 (411)
279 cd01859 MJ1464 MJ1464. This f 98.0 1.2E-05 2.5E-10 80.9 7.2 57 633-692 100-156 (156)
280 cd04133 Rop_like Rop subfamily 98.0 3.5E-05 7.6E-10 80.3 11.0 113 635-765 2-118 (176)
281 COG1162 Predicted GTPases [Gen 98.0 1.2E-05 2.7E-10 91.0 7.2 59 634-695 164-229 (301)
282 PLN00023 GTP-binding protein; 98.0 7.7E-05 1.7E-09 85.8 13.2 120 633-766 20-165 (334)
283 TIGR00490 aEF-2 translation el 97.9 3.8E-05 8.2E-10 96.0 11.5 115 634-766 19-152 (720)
284 PRK12740 elongation factor G; 97.9 5.5E-05 1.2E-09 93.5 12.7 108 640-765 1-125 (668)
285 cd04103 Centaurin_gamma Centau 97.9 5.5E-05 1.2E-09 76.9 10.4 109 635-765 1-112 (158)
286 PLN00043 elongation factor 1-a 97.9 0.00022 4.8E-09 84.9 16.9 118 632-765 5-158 (447)
287 PRK07560 elongation factor EF- 97.9 6.8E-05 1.5E-09 93.9 12.9 115 634-766 20-153 (731)
288 KOG1424 Predicted GTP-binding 97.9 9.3E-06 2E-10 96.5 4.8 59 634-695 314-372 (562)
289 KOG0781 Signal recognition par 97.9 1.9E-05 4.2E-10 93.2 7.3 124 633-765 377-543 (587)
290 PF04670 Gtr1_RagA: Gtr1/RagA 97.8 5.8E-05 1.3E-09 83.0 9.5 122 636-767 1-126 (232)
291 smart00176 RAN Ran (Ras-relate 97.8 0.00014 3E-09 77.6 12.0 108 640-765 1-112 (200)
292 KOG2486 Predicted GTPase [Gene 97.8 9.6E-05 2.1E-09 83.1 10.8 125 632-765 134-261 (320)
293 TIGR00959 ffh signal recogniti 97.8 1.6E-05 3.5E-10 94.1 4.9 119 634-766 99-253 (428)
294 cd01873 RhoBTB RhoBTB subfamil 97.8 0.00017 3.7E-09 76.4 12.0 113 634-765 2-133 (195)
295 COG0541 Ffh Signal recognition 97.8 9.7E-05 2.1E-09 87.0 11.0 120 633-766 99-253 (451)
296 COG4917 EutP Ethanolamine util 97.8 4.7E-05 1E-09 77.2 6.5 103 635-766 2-104 (148)
297 PF09439 SRPRB: Signal recogni 97.7 2.6E-05 5.6E-10 83.0 4.3 119 635-766 4-126 (181)
298 cd03115 SRP The signal recogni 97.7 0.00011 2.5E-09 75.2 8.2 117 636-766 2-153 (173)
299 PRK09435 membrane ATPase/prote 97.7 0.00025 5.3E-09 81.8 11.2 25 632-656 54-78 (332)
300 PRK13768 GTPase; Provisional 97.6 7.9E-05 1.7E-09 82.2 6.4 81 682-767 97-177 (253)
301 KOG0447 Dynamin-like GTP bindi 97.6 0.0021 4.5E-08 77.2 18.1 126 635-766 309-493 (980)
302 KOG0448 Mitofusin 1 GTPase, in 97.6 0.00023 4.9E-09 87.2 9.3 118 634-766 109-275 (749)
303 KOG0073 GTP-binding ADP-ribosy 97.5 0.00061 1.3E-08 71.9 10.8 113 634-765 16-130 (185)
304 COG5256 TEF1 Translation elong 97.5 0.0014 3E-08 77.1 14.6 120 632-766 5-159 (428)
305 PTZ00327 eukaryotic translatio 97.5 0.00089 1.9E-08 80.3 13.0 118 633-766 33-185 (460)
306 KOG2485 Conserved ATP/GTP bind 97.5 0.00032 7E-09 79.9 8.5 65 631-695 140-209 (335)
307 KOG0395 Ras-related GTPase [Ge 97.5 0.0005 1.1E-08 73.7 9.5 118 634-766 3-122 (196)
308 KOG0780 Signal recognition par 97.4 0.00015 3.3E-09 84.3 5.3 120 633-766 100-254 (483)
309 COG0012 Predicted GTPase, prob 97.4 0.00029 6.3E-09 81.9 7.6 87 634-728 2-108 (372)
310 KOG1954 Endocytosis/signaling 97.4 0.00051 1.1E-08 79.6 9.1 128 631-767 55-226 (532)
311 COG2229 Predicted GTPase [Gene 97.3 0.0027 5.9E-08 68.0 12.7 116 634-766 10-135 (187)
312 KOG0410 Predicted GTP binding 97.3 0.00047 1E-08 78.9 7.2 126 633-765 177-307 (410)
313 TIGR00092 GTP-binding protein 97.3 0.00067 1.5E-08 79.3 8.6 88 635-728 3-108 (368)
314 TIGR00750 lao LAO/AO transport 97.3 0.00075 1.6E-08 76.2 8.5 25 632-656 32-56 (300)
315 TIGR03348 VI_IcmF type VI secr 97.2 0.001 2.2E-08 87.6 10.5 123 635-765 112-256 (1169)
316 KOG2484 GTPase [General functi 97.2 0.00033 7.1E-09 81.8 4.5 64 629-695 247-310 (435)
317 COG5192 BMS1 GTP-binding prote 97.2 0.0019 4.1E-08 77.7 10.5 112 630-766 65-177 (1077)
318 KOG1707 Predicted Ras related/ 97.1 0.0014 3.1E-08 79.5 9.5 120 632-766 7-129 (625)
319 KOG0078 GTP-binding protein SE 97.1 0.0073 1.6E-07 65.8 13.3 122 630-766 8-131 (207)
320 KOG3883 Ras family small GTPas 97.0 0.0045 9.7E-08 65.0 10.3 126 631-768 6-134 (198)
321 KOG0084 GTPase Rab1/YPT1, smal 97.0 0.0082 1.8E-07 65.0 12.6 121 631-766 6-128 (205)
322 KOG0458 Elongation factor 1 al 96.9 0.0081 1.8E-07 73.2 12.7 119 633-766 176-329 (603)
323 cd03112 CobW_like The function 96.9 0.0036 7.7E-08 64.5 8.5 22 636-657 2-23 (158)
324 KOG1486 GTP-binding protein DR 96.9 0.0022 4.7E-08 71.6 7.0 105 634-748 62-167 (364)
325 KOG1491 Predicted GTP-binding 96.9 0.0026 5.7E-08 73.5 7.8 87 633-727 19-124 (391)
326 PF00004 AAA: ATPase family as 96.7 0.0052 1.1E-07 58.9 7.9 103 637-763 1-111 (132)
327 KOG0094 GTPase Rab6/YPT6/Ryh1, 96.7 0.016 3.5E-07 63.0 12.3 117 634-767 22-143 (221)
328 PRK01889 GTPase RsgA; Reviewed 96.7 0.0022 4.7E-08 74.5 6.2 58 634-694 195-259 (356)
329 COG0480 FusA Translation elong 96.7 0.0098 2.1E-07 74.8 12.2 116 633-766 9-142 (697)
330 KOG0080 GTPase Rab18, small G 96.7 0.011 2.3E-07 62.7 10.0 115 633-764 10-129 (209)
331 KOG0095 GTPase Rab30, small G 96.6 0.034 7.4E-07 58.3 13.0 119 630-766 3-126 (213)
332 KOG0092 GTPase Rab5/YPT51 and 96.5 0.0071 1.5E-07 65.3 8.0 117 633-766 4-124 (200)
333 KOG1532 GTPase XAB1, interacts 96.5 0.0029 6.4E-08 71.4 4.9 27 631-657 16-42 (366)
334 COG0532 InfB Translation initi 96.5 0.023 5.1E-07 68.8 12.6 114 633-765 4-120 (509)
335 KOG2423 Nucleolar GTPase [Gene 96.5 0.0028 6.1E-08 74.2 4.7 75 617-696 292-366 (572)
336 COG1217 TypA Predicted membran 96.4 0.019 4.1E-07 68.7 11.4 113 635-765 6-133 (603)
337 KOG0098 GTPase Rab2, small G p 96.4 0.04 8.7E-07 59.7 12.3 114 635-766 7-125 (216)
338 KOG0079 GTP-binding protein H- 96.3 0.022 4.7E-07 59.7 9.8 114 636-765 10-125 (198)
339 KOG0087 GTPase Rab11/YPT3, sma 96.3 0.019 4.2E-07 62.9 9.6 120 630-766 10-133 (222)
340 KOG1145 Mitochondrial translat 96.2 0.032 6.9E-07 68.0 11.8 115 632-765 151-266 (683)
341 COG3276 SelB Selenocysteine-sp 96.1 0.033 7.3E-07 66.4 10.9 115 636-767 2-118 (447)
342 PF03029 ATP_bind_1: Conserved 96.0 0.0043 9.3E-08 68.5 3.1 75 683-766 92-170 (238)
343 PRK14845 translation initiatio 96.0 0.054 1.2E-06 70.9 13.0 103 645-766 472-592 (1049)
344 cd03114 ArgK-like The function 95.9 0.023 5.1E-07 58.3 7.8 22 636-657 1-22 (148)
345 KOG2749 mRNA cleavage and poly 95.9 0.048 1E-06 63.8 10.6 26 632-657 101-126 (415)
346 COG2895 CysN GTPases - Sulfate 95.7 0.077 1.7E-06 62.1 11.3 118 633-767 5-154 (431)
347 COG3523 IcmF Type VI protein s 95.6 0.03 6.4E-07 73.7 8.8 125 636-766 127-270 (1188)
348 KOG3886 GTP-binding protein [S 95.6 0.024 5.3E-07 63.0 6.7 120 635-768 5-132 (295)
349 KOG0090 Signal recognition par 95.5 0.087 1.9E-06 58.2 10.5 117 634-766 38-159 (238)
350 PF03308 ArgK: ArgK protein; 95.5 0.019 4.1E-07 64.8 5.4 24 633-656 28-51 (266)
351 COG0050 TufB GTPases - transla 95.5 0.32 6.8E-06 56.2 14.9 120 630-766 8-142 (394)
352 KOG0394 Ras-related GTPase [Ge 95.4 0.089 1.9E-06 57.0 10.0 109 634-764 9-130 (210)
353 TIGR03263 guanyl_kin guanylate 95.4 0.0087 1.9E-07 61.5 2.2 56 635-692 2-57 (180)
354 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.3 0.18 3.9E-06 51.3 11.3 27 632-658 24-50 (144)
355 KOG0077 Vesicle coat complex C 95.3 0.06 1.3E-06 57.5 8.0 117 632-766 18-135 (193)
356 KOG1144 Translation initiation 95.2 0.059 1.3E-06 67.4 8.8 115 633-766 474-606 (1064)
357 cd03222 ABC_RNaseL_inhibitor T 95.2 0.14 3E-06 54.4 10.5 27 632-658 23-49 (177)
358 KOG0070 GTP-binding ADP-ribosy 95.1 0.029 6.2E-07 60.3 5.0 114 632-764 15-130 (181)
359 cd00009 AAA The AAA+ (ATPases 95.1 0.14 3.1E-06 48.4 9.2 24 634-657 19-42 (151)
360 COG1341 Predicted GTPase or GT 95.0 0.057 1.2E-06 63.9 7.8 27 631-657 70-96 (398)
361 cd03230 ABC_DR_subfamily_A Thi 95.0 0.18 3.8E-06 52.4 10.5 26 633-658 25-50 (173)
362 COG1703 ArgK Putative periplas 94.8 0.11 2.4E-06 59.8 9.0 25 632-656 49-73 (323)
363 cd01120 RecA-like_NTPases RecA 94.8 0.17 3.7E-06 49.6 9.3 22 636-657 1-22 (165)
364 KOG0462 Elongation factor-type 94.8 0.11 2.5E-06 63.4 9.4 119 630-766 56-191 (650)
365 cd03229 ABC_Class3 This class 94.6 0.16 3.4E-06 53.0 9.0 26 633-658 25-50 (178)
366 cd03216 ABC_Carb_Monos_I This 94.6 0.13 2.8E-06 53.2 8.2 26 633-658 25-50 (163)
367 COG4988 CydD ABC-type transpor 94.5 0.11 2.4E-06 63.9 8.5 27 633-659 346-372 (559)
368 KOG0075 GTP-binding ADP-ribosy 94.5 0.089 1.9E-06 55.4 6.6 117 631-765 17-135 (186)
369 PRK11174 cysteine/glutathione 94.4 0.09 1.9E-06 64.3 7.7 26 633-658 375-400 (588)
370 PF13207 AAA_17: AAA domain; P 94.4 0.033 7.2E-07 53.5 3.2 22 636-657 1-22 (121)
371 TIGR02868 CydC thiol reductant 94.3 0.1 2.3E-06 62.9 7.9 26 633-658 360-385 (529)
372 cd00071 GMPK Guanosine monopho 94.3 0.032 7E-07 56.4 3.1 54 637-692 2-56 (137)
373 PRK00300 gmk guanylate kinase; 94.3 0.037 8E-07 58.2 3.6 26 633-658 4-29 (205)
374 cd01983 Fer4_NifH The Fer4_Nif 94.3 0.32 6.9E-06 43.5 9.1 46 637-695 2-47 (99)
375 smart00382 AAA ATPases associa 94.2 0.043 9.4E-07 51.0 3.4 24 634-657 2-25 (148)
376 cd01130 VirB11-like_ATPase Typ 94.1 0.035 7.5E-07 58.5 3.0 24 634-657 25-48 (186)
377 KOG0468 U5 snRNP-specific prot 94.0 0.19 4.1E-06 62.5 9.1 114 635-766 129-263 (971)
378 PF00005 ABC_tran: ABC transpo 94.0 0.037 8E-07 54.3 2.7 26 633-658 10-35 (137)
379 PF05673 DUF815: Protein of un 94.0 0.18 3.9E-06 56.8 8.3 24 634-657 52-75 (249)
380 KOG0461 Selenocysteine-specifi 93.9 0.38 8.3E-06 56.3 10.9 116 634-767 7-137 (522)
381 COG3839 MalK ABC-type sugar tr 93.9 0.037 8.1E-07 64.5 2.8 28 633-660 28-55 (338)
382 KOG0093 GTPase Rab3, small G p 93.9 0.65 1.4E-05 49.1 11.4 115 634-765 21-139 (193)
383 PF02263 GBP: Guanylate-bindin 93.8 0.16 3.4E-06 56.8 7.6 60 635-694 22-86 (260)
384 cd03243 ABC_MutS_homologs The 93.8 0.26 5.6E-06 52.5 8.7 23 634-656 29-51 (202)
385 COG1116 TauB ABC-type nitrate/ 93.8 0.043 9.3E-07 61.5 3.0 27 633-659 28-54 (248)
386 cd03283 ABC_MutS-like MutS-lik 93.8 0.17 3.6E-06 54.5 7.3 25 634-658 25-49 (199)
387 PRK14738 gmk guanylate kinase; 93.8 0.05 1.1E-06 58.4 3.4 26 632-657 11-36 (206)
388 KOG0446 Vacuolar sorting prote 93.8 0.061 1.3E-06 67.5 4.6 79 683-766 133-213 (657)
389 cd00267 ABC_ATPase ABC (ATP-bi 93.6 0.28 6E-06 49.9 8.3 26 633-658 24-49 (157)
390 KOG0054 Multidrug resistance-a 93.6 0.26 5.6E-06 66.2 10.0 77 634-711 1166-1251(1381)
391 COG3840 ThiQ ABC-type thiamine 93.6 0.051 1.1E-06 59.1 2.9 24 634-657 25-48 (231)
392 PRK14737 gmk guanylate kinase; 93.5 0.055 1.2E-06 57.7 3.1 55 634-690 4-58 (186)
393 PRK00411 cdc6 cell division co 93.5 0.83 1.8E-05 53.0 12.9 39 617-657 40-78 (394)
394 COG0488 Uup ATPase components 93.5 0.2 4.4E-06 61.6 8.3 31 633-663 347-377 (530)
395 PRK08472 fliI flagellum-specif 93.4 0.053 1.1E-06 65.1 3.1 92 631-728 154-256 (434)
396 cd03281 ABC_MSH5_euk MutS5 hom 93.2 0.51 1.1E-05 51.3 9.9 22 635-656 30-51 (213)
397 cd02038 FleN-like FleN is a me 93.2 0.53 1.1E-05 47.5 9.4 98 638-763 4-108 (139)
398 PTZ00243 ABC transporter; Prov 93.1 0.2 4.4E-06 68.5 8.2 24 634-657 1336-1359(1560)
399 KOG1143 Predicted translation 93.1 0.065 1.4E-06 62.9 3.1 120 633-768 166-319 (591)
400 cd03225 ABC_cobalt_CbiO_domain 93.1 0.074 1.6E-06 56.3 3.4 26 633-658 26-51 (211)
401 PLN03232 ABC transporter C fam 93.1 0.19 4.1E-06 68.5 7.9 24 634-657 1262-1285(1495)
402 cd01131 PilT Pilus retraction 93.1 0.064 1.4E-06 57.3 2.8 23 635-657 2-24 (198)
403 cd01128 rho_factor Transcripti 93.0 0.51 1.1E-05 53.0 9.9 28 630-657 12-39 (249)
404 COG0194 Gmk Guanylate kinase [ 93.0 0.05 1.1E-06 58.9 1.9 56 633-691 3-58 (191)
405 cd03261 ABC_Org_Solvent_Resist 92.9 0.08 1.7E-06 57.2 3.4 26 633-658 25-50 (235)
406 cd03264 ABC_drug_resistance_li 92.8 0.08 1.7E-06 56.2 3.1 25 633-658 25-49 (211)
407 PRK13851 type IV secretion sys 92.8 0.079 1.7E-06 61.9 3.3 24 634-657 162-185 (344)
408 cd03287 ABC_MSH3_euk MutS3 hom 92.8 0.91 2E-05 50.1 11.2 122 634-764 31-155 (222)
409 PRK10078 ribose 1,5-bisphospho 92.8 0.089 1.9E-06 55.3 3.3 23 635-657 3-25 (186)
410 cd03265 ABC_DrrA DrrA is the A 92.7 0.092 2E-06 56.2 3.4 25 633-657 25-49 (220)
411 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.7 0.091 2E-06 55.9 3.4 26 633-658 29-54 (218)
412 TIGR02673 FtsE cell division A 92.7 0.092 2E-06 55.7 3.4 26 633-658 27-52 (214)
413 COG1136 SalX ABC-type antimicr 92.6 0.095 2.1E-06 58.2 3.4 27 633-659 30-56 (226)
414 TIGR00960 3a0501s02 Type II (G 92.6 0.097 2.1E-06 55.8 3.3 25 633-657 28-52 (216)
415 cd03260 ABC_PstB_phosphate_tra 92.6 0.095 2.1E-06 56.3 3.3 26 633-658 25-50 (227)
416 PRK13695 putative NTPase; Prov 92.6 0.7 1.5E-05 48.0 9.5 23 635-657 1-23 (174)
417 COG5008 PilU Tfp pilus assembl 92.5 0.41 8.9E-06 54.8 8.2 25 633-657 126-150 (375)
418 PF13671 AAA_33: AAA domain; P 92.5 0.1 2.2E-06 51.3 3.2 22 636-657 1-22 (143)
419 cd03226 ABC_cobalt_CbiO_domain 92.5 0.098 2.1E-06 55.4 3.3 26 633-658 25-50 (205)
420 TIGR01166 cbiO cobalt transpor 92.5 0.1 2.3E-06 54.5 3.4 26 633-658 17-42 (190)
421 cd03258 ABC_MetN_methionine_tr 92.4 0.1 2.3E-06 56.2 3.4 26 633-658 30-55 (233)
422 PLN03130 ABC transporter C fam 92.4 0.27 5.9E-06 67.6 8.0 24 634-657 1265-1288(1622)
423 TIGR02322 phosphon_PhnN phosph 92.4 0.1 2.2E-06 53.9 3.2 22 636-657 3-24 (179)
424 TIGR00957 MRP_assoc_pro multi 92.4 0.29 6.4E-06 66.8 8.2 24 634-657 1312-1335(1522)
425 cd03224 ABC_TM1139_LivF_branch 92.4 0.1 2.3E-06 55.5 3.3 26 633-658 25-50 (222)
426 TIGR03608 L_ocin_972_ABC putat 92.4 0.1 2.3E-06 54.9 3.2 26 633-658 23-48 (206)
427 cd03293 ABC_NrtD_SsuB_transpor 92.4 0.098 2.1E-06 56.0 3.1 26 633-658 29-54 (220)
428 TIGR02211 LolD_lipo_ex lipopro 92.4 0.11 2.3E-06 55.5 3.4 26 633-658 30-55 (221)
429 TIGR00235 udk uridine kinase. 92.4 0.1 2.2E-06 55.7 3.2 25 633-657 5-29 (207)
430 TIGR02315 ABC_phnC phosphonate 92.3 0.11 2.4E-06 56.3 3.4 26 633-658 27-52 (243)
431 cd03292 ABC_FtsE_transporter F 92.3 0.11 2.4E-06 55.1 3.3 25 633-657 26-50 (214)
432 cd03262 ABC_HisP_GlnQ_permease 92.3 0.11 2.4E-06 54.9 3.4 26 633-658 25-50 (213)
433 cd03259 ABC_Carb_Solutes_like 92.3 0.11 2.5E-06 55.1 3.4 26 633-658 25-50 (213)
434 cd03238 ABC_UvrA The excision 92.2 0.11 2.5E-06 55.0 3.3 25 632-656 19-43 (176)
435 cd03269 ABC_putative_ATPase Th 92.2 0.12 2.6E-06 54.9 3.4 26 633-658 25-50 (210)
436 CHL00095 clpC Clp protease ATP 92.2 3.1 6.7E-05 53.9 16.5 22 635-656 540-561 (821)
437 cd03263 ABC_subfamily_A The AB 92.2 0.12 2.6E-06 55.1 3.4 26 633-658 27-52 (220)
438 cd03280 ABC_MutS2 MutS2 homolo 92.1 0.59 1.3E-05 49.8 8.6 21 635-655 29-49 (200)
439 cd03235 ABC_Metallic_Cations A 92.1 0.11 2.5E-06 55.1 3.3 26 633-658 24-49 (213)
440 KOG0074 GTP-binding ADP-ribosy 92.1 0.6 1.3E-05 49.2 8.2 82 632-732 15-100 (185)
441 cd03111 CpaE_like This protein 92.1 0.8 1.7E-05 44.4 8.7 96 637-761 2-106 (106)
442 cd03257 ABC_NikE_OppD_transpor 92.1 0.12 2.6E-06 55.2 3.3 26 633-658 30-55 (228)
443 KOG0086 GTPase Rab4, small G p 92.1 1.3 2.7E-05 47.2 10.5 59 633-692 8-68 (214)
444 TIGR01271 CFTR_protein cystic 92.1 0.27 5.9E-06 67.0 7.3 24 634-657 1245-1268(1490)
445 cd03268 ABC_BcrA_bacitracin_re 92.0 0.12 2.7E-06 54.6 3.4 26 633-658 25-50 (208)
446 cd03256 ABC_PhnC_transporter A 92.0 0.12 2.7E-06 55.7 3.4 26 633-658 26-51 (241)
447 TIGR01978 sufC FeS assembly AT 92.0 0.12 2.7E-06 55.8 3.4 25 633-657 25-49 (243)
448 PRK09270 nucleoside triphospha 92.0 0.2 4.3E-06 54.5 5.0 38 619-657 19-56 (229)
449 cd03218 ABC_YhbG The ABC trans 92.0 0.13 2.8E-06 55.4 3.4 26 633-658 25-50 (232)
450 PRK14242 phosphate transporter 92.0 0.12 2.5E-06 56.5 3.2 25 633-657 31-55 (253)
451 TIGR02524 dot_icm_DotB Dot/Icm 92.0 0.12 2.5E-06 60.8 3.3 24 634-657 134-157 (358)
452 PRK13900 type IV secretion sys 91.9 0.11 2.3E-06 60.4 3.0 24 634-657 160-183 (332)
453 cd03301 ABC_MalK_N The N-termi 91.9 0.13 2.8E-06 54.6 3.4 26 633-658 25-50 (213)
454 PF13555 AAA_29: P-loop contai 91.9 0.15 3.2E-06 46.4 3.2 20 636-655 25-44 (62)
455 PF13238 AAA_18: AAA domain; P 91.9 0.13 2.8E-06 49.2 3.0 21 637-657 1-21 (129)
456 PRK15177 Vi polysaccharide exp 91.9 0.13 2.8E-06 55.4 3.4 26 633-658 12-37 (213)
457 PRK11629 lolD lipoprotein tran 91.9 0.13 2.8E-06 55.6 3.3 26 633-658 34-59 (233)
458 PRK11248 tauB taurine transpor 91.9 0.13 2.8E-06 56.9 3.4 27 632-658 25-51 (255)
459 PRK10908 cell division protein 91.8 0.14 3E-06 55.0 3.4 27 632-658 26-52 (222)
460 PRK10584 putative ABC transpor 91.8 0.13 2.9E-06 55.1 3.3 26 633-658 35-60 (228)
461 PRK11264 putative amino-acid A 91.8 0.14 3E-06 55.8 3.4 26 633-658 28-53 (250)
462 COG1131 CcmA ABC-type multidru 91.8 0.18 3.9E-06 57.4 4.5 27 633-659 30-56 (293)
463 cd03254 ABCC_Glucan_exporter_l 91.8 0.14 3E-06 55.0 3.4 26 633-658 28-53 (229)
464 PRK12377 putative replication 91.8 0.35 7.7E-06 54.2 6.7 23 635-657 102-124 (248)
465 PRK14247 phosphate ABC transpo 91.8 0.13 2.9E-06 56.0 3.3 26 633-658 28-53 (250)
466 cd03296 ABC_CysA_sulfate_impor 91.7 0.14 3E-06 55.6 3.4 26 633-658 27-52 (239)
467 cd03219 ABC_Mj1267_LivG_branch 91.7 0.14 3E-06 55.2 3.3 26 633-658 25-50 (236)
468 PRK07261 topology modulation p 91.7 0.14 3E-06 53.7 3.2 23 635-657 1-23 (171)
469 TIGR02770 nickel_nikD nickel i 91.7 0.14 3.1E-06 55.3 3.3 26 633-658 11-36 (230)
470 PRK10895 lipopolysaccharide AB 91.7 0.14 3.1E-06 55.5 3.4 26 633-658 28-53 (241)
471 PRK13541 cytochrome c biogenes 91.7 0.15 3.2E-06 53.8 3.4 26 633-658 25-50 (195)
472 PRK13540 cytochrome c biogenes 91.6 0.15 3.2E-06 54.0 3.4 27 632-658 25-51 (200)
473 COG4108 PrfC Peptide chain rel 91.6 1.2 2.5E-05 54.0 10.9 113 634-764 12-145 (528)
474 cd03266 ABC_NatA_sodium_export 91.6 0.15 3.2E-06 54.3 3.4 26 633-658 30-55 (218)
475 TIGR01189 ccmA heme ABC export 91.6 0.15 3.3E-06 53.8 3.4 26 633-658 25-50 (198)
476 PRK13539 cytochrome c biogenes 91.6 0.15 3.2E-06 54.4 3.4 26 633-658 27-52 (207)
477 PRK05480 uridine/cytidine kina 91.6 0.15 3.2E-06 54.3 3.3 25 633-657 5-29 (209)
478 COG0563 Adk Adenylate kinase a 91.6 0.12 2.7E-06 55.0 2.7 23 635-657 1-23 (178)
479 cd02042 ParA ParA and ParB of 91.5 0.92 2E-05 42.8 8.3 50 637-694 2-52 (104)
480 smart00763 AAA_PrkA PrkA AAA d 91.5 0.37 7.9E-06 56.9 6.7 40 618-657 62-101 (361)
481 KOG1487 GTP-binding protein DR 91.5 0.26 5.7E-06 56.0 5.2 105 636-749 61-165 (358)
482 PRK09183 transposase/IS protei 91.5 0.2 4.3E-06 56.1 4.4 27 631-657 99-125 (259)
483 TIGR03864 PQQ_ABC_ATP ABC tran 91.5 0.15 3.4E-06 55.2 3.4 26 633-658 26-51 (236)
484 PRK11124 artP arginine transpo 91.5 0.16 3.4E-06 55.2 3.4 26 633-658 27-52 (242)
485 PF05621 TniB: Bacterial TniB 91.4 3.9 8.4E-05 47.6 14.5 134 613-761 39-189 (302)
486 cd03249 ABC_MTABC3_MDL1_MDL2 M 91.4 0.16 3.4E-06 55.0 3.4 26 633-658 28-53 (238)
487 PRK14267 phosphate ABC transpo 91.4 0.16 3.4E-06 55.6 3.4 26 633-658 29-54 (253)
488 KOG0743 AAA+-type ATPase [Post 91.4 0.47 1E-05 57.2 7.5 22 636-657 237-258 (457)
489 PRK11537 putative GTP-binding 91.4 0.63 1.4E-05 53.9 8.3 23 635-657 5-27 (318)
490 PRK14262 phosphate ABC transpo 91.4 0.16 3.5E-06 55.4 3.4 25 633-657 28-52 (250)
491 cd03214 ABC_Iron-Siderophores_ 91.4 0.17 3.6E-06 52.9 3.4 26 633-658 24-49 (180)
492 TIGR00382 clpX endopeptidase C 91.4 0.51 1.1E-05 56.7 7.8 29 916-944 311-339 (413)
493 PRK13833 conjugal transfer pro 91.4 0.14 3E-06 59.5 3.0 24 634-657 144-167 (323)
494 PRK14269 phosphate ABC transpo 91.4 0.16 3.4E-06 55.5 3.3 25 633-657 27-51 (246)
495 PTZ00099 rab6; Provisional 91.3 1.2 2.6E-05 46.9 9.7 69 682-765 29-98 (176)
496 cd03295 ABC_OpuCA_Osmoprotecti 91.3 0.16 3.5E-06 55.2 3.4 26 633-658 26-51 (242)
497 PRK10744 pstB phosphate transp 91.3 0.16 3.4E-06 56.1 3.3 26 632-657 37-62 (260)
498 cd03231 ABC_CcmA_heme_exporter 91.3 0.17 3.6E-06 53.8 3.3 26 633-658 25-50 (201)
499 PRK08233 hypothetical protein; 91.3 0.18 3.8E-06 51.7 3.4 24 634-657 3-26 (182)
500 cd03215 ABC_Carb_Monos_II This 91.3 0.17 3.6E-06 53.0 3.3 27 633-659 25-51 (182)
No 1
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=100.00 E-value=2.7e-221 Score=1915.01 Aligned_cols=747 Identities=66% Similarity=1.028 Sum_probs=711.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHH
Q 000824 511 RPAGLGRAAPLLEPAPRVVQHPRVNGAISHTQTQPIEDPGNGEAEEYDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQV 590 (1266)
Q Consensus 511 rpaglg~~~~~l~pa~~~~q~arlNgk~dlsqaeavADli~s~s~E~~eLr~ELq~LR~kLlrLv~Rlg~sPe~~~laQv 590 (1266)
||+|+|++.+++.|+ ++++.++.|+..++...+.+++.....+++.++++++|+.||.+|+|+++|++++|.+..++|+
T Consensus 1 ~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rvkflrl~~Rlg~s~~~~vvaqV 79 (763)
T TIGR00993 1 RPAGLGRSLPLLKPA-SAPRQSRVNGFGSSNQFQQAEDSTTTLSEEHKEKLEKLQLIRVKFLRLAQRLGQTPENSIAAQV 79 (763)
T ss_pred CCCCcCccccccCCc-cccccCCcccCCCcccccCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhCCCcccchHHHH
Confidence 899999999999999 8888999999999888888888778889999999999999999999999999999999999999
Q ss_pred HHHcchhHHHHhhhcCCCCCcchhHHHHHHHHHHHhCCCCCCCccEEEEEccCCCCHHHHHHHHhcCccccccCccccee
Q 000824 591 LYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTK 670 (1266)
Q Consensus 591 LyrLgLaE~Li~~~~~rL~~fs~d~a~~LaeqLe~~~~e~lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTr 670 (1266)
||||++++ ..... ..|+++.|+.+++++++.+.+++++.++|+|+|+||||||||||+|+|+.+|.++.+..+|+
T Consensus 80 lyrl~l~~---~~~~~--~~~s~d~a~~~a~~~ea~g~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TT 154 (763)
T TIGR00993 80 LYRLGLLA---GRQGG--GAFSLDAAKAMAEQLEAEGQDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTT 154 (763)
T ss_pred HHHHHHhh---ccCcc--ccccchhhHHHHhhhhhhhccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCce
Confidence 99999976 22222 35778999999999999999999999999999999999999999999999999888877787
Q ss_pred EEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCC
Q 000824 671 KVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPS 750 (1266)
Q Consensus 671 e~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~e 750 (1266)
.++.+.+.+.|.+|+|||||||.++..+...++++++.|+++++.+++|+||||++++..+.+.++..+++.|+++||..
T Consensus 155 r~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~ 234 (763)
T TIGR00993 155 SVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS 234 (763)
T ss_pred EEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH
Confidence 88888888899999999999999875555567889999999999889999999999986666667889999999999999
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcchhhhhhccCHHHHHHHHHHhccCCccc-----ceeeccccccccCCCCCCcccC
Q 000824 751 IWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMN-----PVSLVENHSACRTNRAGQRVLP 825 (1266)
Q Consensus 751 i~k~tIVVLTKaDeL~Pde~ng~~~syEefL~qRS~~LQqlIrqc~gry~l~N-----PV~LVEN~p~C~tNe~gekvLP 825 (1266)
+|+|+||||||+|.++|+++++.+.+|++|+.+|++.+|++|++|.++++++| ||.|||||+.|.+|..++++||
T Consensus 235 Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~rs~~Lq~~Irq~~g~~~l~n~~~~~Pv~lvEN~~~C~~N~~gekVLP 314 (763)
T TIGR00993 235 IWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQRSHIVQQAIGQAVGDLRLMNPNLMNPVSLVENHPACRKNRAGQKVLP 314 (763)
T ss_pred hHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhhChHHHHHHHHHhcCcceecccCCCCCEEEEecCCcccCCCCCceeCC
Confidence 99999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhhhhcccCCC-CCCCCcccCCCCChHHHHHHhhhcCCCCCCccccCCCCCCcccccCC
Q 000824 826 NGQVWKPHLLLLSFASKILAEANTLLKLQDTP-PGKPFSTRSRAPPLPFLLSSLLQSRPQVKLPEEQFGDEDSLDDDLDD 904 (1266)
Q Consensus 826 ngqdWi~qLllLc~v~kIL~eA~sfLkf~d~~-~gk~f~~r~r~pPLP~llsslLq~r~~~k~~~~~~g~~~d~d~d~~~ 904 (1266)
|++.|+++|++|||+.+|+++|++++++++.. ..++|..+.|+||||||||+|||+|+|+|++++|+|+++|+|.|+|+
T Consensus 315 nG~~W~p~llllc~~~k~l~~a~~l~~~q~~~~~~~~~~~~~~~~plp~~ls~ll~~r~~~k~~~~~~~~~~d~d~~~~~ 394 (763)
T TIGR00993 315 NGQVWKPHLLLLCYSSKILSEANALLKLQENIDGRRPFGFRSRAPPLPYLLSWLLQSRAHPKLPEQQGGDEEDSDIELED 394 (763)
T ss_pred CCchhHHHHHHHHHHhhhhccccccccccccccCCCcccccccCCchHHHHHHHhhcCCCCCChhhhcCccccccchhhh
Confidence 99999999999999999999999999999985 45789999999999999999999999999999999999999999888
Q ss_pred CCCCCc---ccccCCCCCcccccHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCc
Q 000824 905 SSESED---ESEFDELPPFKRLTKAQVAKLTKAQKRAYFDELEYREKLFMKKQLKEEKKRRKMMKKMAAAAKDLPSDNSE 981 (1266)
Q Consensus 905 ~~d~~e---edeydqlppf~~l~ksq~~kl~k~q~k~y~de~~yr~kl~~kkq~ke~~~r~k~~k~~~~~~~~~~~~~~~ 981 (1266)
++|+|| |||||||||||||+||||+||||+|||+||||||||||||||||||||+||+|||||++.+++..+++++|
T Consensus 395 ~~d~~~ed~e~eydqlppf~~l~ksq~~kl~k~q~k~y~de~dyr~kl~~kkq~ke~~~r~k~~k~~~~~~~~~~~~~~~ 474 (763)
T TIGR00993 395 SSDSDEESGEDEYDQLPPFKPLTKAQMAKLSKEQRKAYLEEYDYRVKLLQKKQWREELKRMKMMKKFGKEIGELPDGYSE 474 (763)
T ss_pred ccccccccccccccccCCCccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccCccc
Confidence 765554 45999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCCCCccCCCCCCCCCCCCCCCcceeeeecCCCceeeeccccCCcccccCCCcccchhhhhhhccCCceeEE
Q 000824 982 NVEEESGGAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLVRPVLETHGWDHDVGYEGINAERLFVVKNKIPVSFS 1061 (1266)
Q Consensus 982 ~~~~e~~~~~~~~v~~pd~~lp~sFDsD~p~~rYr~l~~~~q~l~Rpvl~~~gwDhd~g~dg~n~e~~~~~~~~~p~~~~ 1061 (1266)
+.++++++|+++|||||||+||||||||||+||||||++++|||||||||||||||||||||||+|++|+|+++||+|++
T Consensus 475 ~~~~~~~~~~~~~vp~pd~~lp~sFDsD~p~~rYr~l~~~~q~l~rpvl~~~gWDhd~g~dg~~~e~~~~~~~~~p~s~~ 554 (763)
T TIGR00993 475 EVDEENGGPAAVPVPLPDMVLPASFDSDNPAYRYRYLEPSSQLLTRPVLDTHGWDHDCGYDGVNAERSFAVKEKFPASVT 554 (763)
T ss_pred ccccccCCCccccccCccccCCCccCCCCccceeecccCccceeEeecccCCCCccccCcCcccHHHHHHHHhcCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccceeeeeeeeeeeecCCCCcceeeeeccccccceEEEeccccccccccccccccceEEEeecceeeccccccc
Q 000824 1062 GQVTKDKKDANVQMEVVSSLKHGEGKATSLGFDMQTVGKDLAYTLRSETRFSNFRKNKAMAGLSVTHLGDSLSAGVKVED 1141 (1266)
Q Consensus 1062 ~q~~Kdkk~~~i~~e~~~s~kh~~~~s~~~g~diQt~gk~l~yt~r~et~~kn~~~nkt~~G~s~t~~g~~~~~G~K~Ed 1141 (1266)
||||||||||+||||||+||||++++|+|+||||||+|||||||+||||||||||||||+||+|+||||++|++|+||||
T Consensus 555 ~q~~kdkk~~~i~~e~~~s~kh~~~~s~~~g~diQ~~gk~l~yt~r~etk~kn~~~n~t~~g~s~t~lg~~~~~G~K~Ed 634 (763)
T TIGR00993 555 VQVTKDKKDFNIHLDSSVSAKHGENGSTMAGFDIQNVGKQLAYTVRGETKFKNFRRNKTAAGLSVTFLGENVSTGVKLED 634 (763)
T ss_pred EEEeechhhceeeeeeeeeeecCCCcceeeeeehhhhchheEEEEeccceecccccccccceeEEEEecceeeeeeeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccceEEEEecceeeecCccccccceeEeeccCCCCCcccccccceeeeecccceeeeeccccccccCccceeEEEE
Q 000824 1142 KLIVNKRFRVVMTGGAMTSRSDVAYGGSLEAQLRDADYPLGRSLTTLGLSVMDWHGDLAIGCNIQSQVPIGRSTNMIGRA 1221 (1266)
Q Consensus 1142 ~~~vgkr~~lv~~~g~m~~~gd~Ayg~~~e~~lr~~dyp~~~~~~tl~~s~~~w~~~~~~g~nlqsq~~~gr~~~~~~~~ 1221 (1266)
+|+|||||+||+|+|+|+++||+||||||||+||+||||++|+++|||||+|+|||||||||||||||++||+|+|++||
T Consensus 635 ~~~~gkr~~lv~~~G~~~~~gd~Ayg~~~e~~lr~~dyp~~~~~~tl~~s~~~w~~~~~l~~n~qsq~~~gr~s~~~~~~ 714 (763)
T TIGR00993 635 QIALGKRLVLVGSTGTMRSQGDSAYGANLEVRLREADFPLGQDQSSLGLSLVDWRGDLALGANIQSQVSIGRSSKLAARA 714 (763)
T ss_pred eeeeccceEEEEecceeeccCcccccceeEEEeecCcCCCCCCcchhceeeeccccceeeeccceeeecccCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCceeEEEEeCchhhHHHHHHHHHHHHHHHhcC-ccccc
Q 000824 1222 NLNNRGAGQVSIRVNSSEQLQLALIGLIPLLKKLLGY-SQQMQ 1263 (1266)
Q Consensus 1222 ~lNn~~~Gqi~ir~~sse~~qial~~~~p~~~~l~~~-~~~~~ 1263 (1266)
|||||++||||||+||||||||||||+|||+++||++ +.+++
T Consensus 715 ~lnn~~~Gqi~ir~~sse~~~ial~~~~~~~~~l~~~~~~~~~ 757 (763)
T TIGR00993 715 GLNNKGSGQISVRTSSSDQLQIALVAILPLAKKIYKYYYPQTT 757 (763)
T ss_pred cccCcccceEEEEeccHHHHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 9999999999999999999999999999999999998 44443
No 2
>PF11886 DUF3406: Domain of unknown function (DUF3406); InterPro: IPR024283 This C-terminal domain is found in chloroplast protein import component Toc86/159 [] and homologue Toc90 [], and in some uncharacterised proteins.
Probab=100.00 E-value=1.8e-126 Score=1016.04 Aligned_cols=272 Identities=63% Similarity=1.065 Sum_probs=270.0
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCcceeeeecCCCceeeeccccCCcccccCCCcccchhhhhhhccCCceeEEEEEecc
Q 000824 988 GGAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLVRPVLETHGWDHDVGYEGINAERLFVVKNKIPVSFSGQVTKD 1067 (1266)
Q Consensus 988 ~~~~~~~v~~pd~~lp~sFDsD~p~~rYr~l~~~~q~l~Rpvl~~~gwDhd~g~dg~n~e~~~~~~~~~p~~~~~q~~Kd 1067 (1266)
++|+++|||||||+||||||||||+|||||||+++|||||||||||||||||||||||+|++++|++|||++++||||||
T Consensus 1 ~~~~~v~vp~pD~~lP~SFDsD~p~hRYR~Le~~~q~lvRPVld~~GWDHD~G~DGvn~E~~~~l~~~~pas~~~Qv~KD 80 (273)
T PF11886_consen 1 EGPAQVPVPMPDMALPPSFDSDNPAHRYRCLEPTSQWLVRPVLDPHGWDHDCGFDGVNLERSLVLKKKIPASVSGQVTKD 80 (273)
T ss_pred CCCccceecCCcccCCCCcCCCCCceeeEeecCccceeEeecccCCCcccccCccceehhheehhhcCCceEEEEEEEec
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeeeeeeeecCCCCcceeeeeccccccceEEEeccccccccccccccccceEEEeecceeeccccccceEeecc
Q 000824 1068 KKDANVQMEVVSSLKHGEGKATSLGFDMQTVGKDLAYTLRSETRFSNFRKNKAMAGLSVTHLGDSLSAGVKVEDKLIVNK 1147 (1266)
Q Consensus 1068 kk~~~i~~e~~~s~kh~~~~s~~~g~diQt~gk~l~yt~r~et~~kn~~~nkt~~G~s~t~~g~~~~~G~K~Ed~~~vgk 1147 (1266)
||||+||+|||+||||++++|+|+||||||+||||+||+||||||||||||||+||+|+||||++|++|+||||+|+|||
T Consensus 81 Kkd~~i~~e~s~s~kh~~~~s~~~G~DiQt~gkdLaYt~rgeTkfkn~k~Nkt~~G~S~T~lG~~~~~G~KlED~i~vgk 160 (273)
T PF11886_consen 81 KKDFNIQLESSASYKHGEGGSSMAGFDIQTVGKDLAYTLRGETKFKNFKKNKTTAGLSVTFLGDNVATGLKLEDQISVGK 160 (273)
T ss_pred hhheeEEEeeEEEEEcCCCceEEEEEeeeecCceeEEEEcccceeeccccccccceeEEEEecCeEEEEEeeeeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecceeeecCccccccceeEeeccCCCCCcccccccceeeeecccceeeeeccccccccCccceeEEEEeecCCC
Q 000824 1148 RFRVVMTGGAMTSRSDVAYGGSLEAQLRDADYPLGRSLTTLGLSVMDWHGDLAIGCNIQSQVPIGRSTNMIGRANLNNRG 1227 (1266)
Q Consensus 1148 r~~lv~~~g~m~~~gd~Ayg~~~e~~lr~~dyp~~~~~~tl~~s~~~w~~~~~~g~nlqsq~~~gr~~~~~~~~~lNn~~ 1227 (1266)
|||||+|+|+|+++||+||||||||+||+||||++|+++|||||+|+|||||||||||||||++||+|+|++|||||||+
T Consensus 161 rlklv~s~G~m~~~gd~AYGg~~Ea~lr~kDyPi~~~~~tlglS~m~w~~d~alg~NlqSqf~~gr~skm~v~anlNnk~ 240 (273)
T PF11886_consen 161 RLKLVMSAGAMRGQGDVAYGGNLEATLRGKDYPIGQDQSTLGLSLMKWRGDLALGANLQSQFSVGRGSKMAVRANLNNKG 240 (273)
T ss_pred cEEEEEEccEeeecCceeeceeEEEEeecCCCCCCCcceeeeeEeEecccCeEEeecceEeeecCCCceEEEEecccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEeCchhhHHHHHHHHHHHHHHHhcCc
Q 000824 1228 AGQVSIRVNSSEQLQLALIGLIPLLKKLLGYS 1259 (1266)
Q Consensus 1228 ~Gqi~ir~~sse~~qial~~~~p~~~~l~~~~ 1259 (1266)
+||||||+||||||||||+|+|||+++||+|.
T Consensus 241 ~Gqisik~sSSe~lqIALi~~vpi~~~l~~r~ 272 (273)
T PF11886_consen 241 TGQISIKTSSSEQLQIALIGLVPIARSLLRRL 272 (273)
T ss_pred cceEEEEecchHhHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999985
No 3
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=100.00 E-value=1.1e-37 Score=337.98 Aligned_cols=241 Identities=68% Similarity=1.020 Sum_probs=218.0
Q ss_pred cchhHHHHHHHHHHHhCCCCCCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCC
Q 000824 611 FSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTP 690 (1266)
Q Consensus 611 fs~d~a~~LaeqLe~~~~e~lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTP 690 (1266)
+.++.++.++.++.....+....+++|+|+|+||||||||+|+|+|...+.++.+.++|..+..+.+.+.|.+++|||||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTP 87 (249)
T cd01853 8 FFPDAAQTKALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTP 87 (249)
T ss_pred cCcHHHHHHHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECC
Confidence 45677777888888777777888999999999999999999999999988888888899988888888999999999999
Q ss_pred CCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCCCCC
Q 000824 691 GLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPDGP 770 (1266)
Q Consensus 691 GL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~Pde~ 770 (1266)
||.++..+...++.++..++++++..++|++|||++++..+++..|..+++.|++.||..+|+++|||+||+|.++|++.
T Consensus 88 Gl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~ 167 (249)
T cd01853 88 GLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGL 167 (249)
T ss_pred CcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCC
Confidence 99986444456778888899999888999999999999888888889999999999999999999999999999999998
Q ss_pred CCCCcchhhhhhccCHHHHHHHHHHhccCCcccceeeccccccccCCCCCCcccCCCCCchHHHHHHHHHHHHHHHHhhh
Q 000824 771 NGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANTL 850 (1266)
Q Consensus 771 ng~~~syEefL~qRS~~LQqlIrqc~gry~l~NPV~LVEN~p~C~tNe~gekvLPngqdWi~qLllLc~v~kIL~eA~sf 850 (1266)
.+.+..++.+...+.+.+++.+++..+...+.+|+.+|+|++.|.+|..++++||||+.|+++|+++|+..+++.+|..+
T Consensus 168 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~~~~vlp~g~~w~~~~~~~~~~~~~~~~~~~~ 247 (249)
T cd01853 168 NGTPFSYDRFVAQRSHIVQQAIQQAAGDPRLENPVSLVENHPRCRKNREGEKVLPNGTVWKPQLLLLCYSVKLLSEANIL 247 (249)
T ss_pred CCCcchHHHHHHHHHHHHHHHhhhhccCccccCCEEEEeCCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhccccccc
Confidence 88888888888888888888888888888899999999999999999999999999999999999999999999888776
Q ss_pred h
Q 000824 851 L 851 (1266)
Q Consensus 851 L 851 (1266)
+
T Consensus 248 ~ 248 (249)
T cd01853 248 L 248 (249)
T ss_pred c
Confidence 5
No 4
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=100.00 E-value=1.7e-35 Score=329.06 Aligned_cols=261 Identities=36% Similarity=0.562 Sum_probs=210.0
Q ss_pred HHHHHHHHHhCCCCCCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCc
Q 000824 617 SAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSW 696 (1266)
Q Consensus 617 ~~LaeqLe~~~~e~lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~ 696 (1266)
..|.+.|.+...+. ...++|+|+|++|||||||+|+|+|+.++.++.+.+++..+......+.|+++.||||||+.+.
T Consensus 22 ~~l~~~l~~l~~~~-~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~- 99 (313)
T TIGR00991 22 TKLLELLGKLKEED-VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG- 99 (313)
T ss_pred HHHHHHHHhccccc-ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch-
Confidence 35666666655443 3578999999999999999999999998888777777666555666789999999999999875
Q ss_pred cchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCCCCCCCCCcc
Q 000824 697 SDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPDGPNGTASS 776 (1266)
Q Consensus 697 gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~Pde~ng~~~s 776 (1266)
...++.+.+.++.++...++|+||||++++..+++..|..+++.|++.||..+|+|+||||||+|.++|++ .+
T Consensus 100 --~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~-----~~ 172 (313)
T TIGR00991 100 --GYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDG-----LE 172 (313)
T ss_pred --HHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCC-----CC
Confidence 24455667778888877789999999999877788788999999999999999999999999999998865 57
Q ss_pred hhhhhhccCHHHHHHHHHHhccCC-----cccceeeccccccccCCCCCCcccCCCCCchHHHHHHHHHHHHHHHHhhhh
Q 000824 777 YDMFVTQRSHVVQQAIRQAAGDMR-----LMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANTLL 851 (1266)
Q Consensus 777 yEefL~qRS~~LQqlIrqc~gry~-----l~NPV~LVEN~p~C~tNe~gekvLPngqdWi~qLllLc~v~kIL~eA~sfL 851 (1266)
|++|+.++++.+|+.|+++.+..+ +++|+.+|||++.|++|..++++|||++.|+++|+... +.-..+..++++
T Consensus 173 ~e~fv~~~~~~lq~~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~-~~~~~~~~~~~~ 251 (313)
T TIGR00991 173 YNDFFSKRSEALLRVIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEI-TEVISNGSKPIH 251 (313)
T ss_pred HHHHHHhcHHHHHHHHHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHH-HHHHhCCCCCeE
Confidence 999999999999999999999875 47999999999999999999999999999999986333 333333333333
Q ss_pred ---cccCCCCCCCCcccCCCCChHHHHHHhhhcCCCCCCcc
Q 000824 852 ---KLQDTPPGKPFSTRSRAPPLPFLLSSLLQSRPQVKLPE 889 (1266)
Q Consensus 852 ---kf~d~~~gk~f~~r~r~pPLP~llsslLq~r~~~k~~~ 889 (1266)
|+.+++. |-...-.+.||-.++.++|..+++.+.+.
T Consensus 252 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (313)
T TIGR00991 252 VDKKLIDGPN--PNNRGKMFIPLIFAVQYLLVVKPIRRAIH 290 (313)
T ss_pred ecHHHccCCC--CCcccccHHHHHHHHHHHhhhHHHHHHHH
Confidence 2333210 11111235799999999999999988864
No 5
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.91 E-value=2.6e-24 Score=227.14 Aligned_cols=157 Identities=34% Similarity=0.526 Sum_probs=128.3
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCcccccc-CcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTD-AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvd-a~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
++|+|+|+||+||||++|+|+|...|.++ ...++|..|....+.+.|++|+|||||||.++. ..++++.+.|.+++
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~---~~~~~~~~~i~~~l 77 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSD---GSDEEIIREIKRCL 77 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETT---EEHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCc---ccHHHHHHHHHHHH
Confidence 58999999999999999999999999876 467788889999999999999999999998864 35677888888876
Q ss_pred hc--CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCCCCCCCCCcchhhhhhccC-HHHHH
Q 000824 714 KK--TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRS-HVVQQ 790 (1266)
Q Consensus 714 k~--~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~Pde~ng~~~syEefL~qRS-~~LQq 790 (1266)
.. .++|++|||++++ +++..+..+++.|.++||..+|+|+|||||++|.+.+. .+++|+.... ..+++
T Consensus 78 ~~~~~g~ha~llVi~~~--r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~-------~~~~~l~~~~~~~l~~ 148 (212)
T PF04548_consen 78 SLCSPGPHAFLLVIPLG--RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD-------SLEDYLKKESNEALQE 148 (212)
T ss_dssp HHTTT-ESEEEEEEETT--B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT-------THHHHHHHHHHHHHHH
T ss_pred HhccCCCeEEEEEEecC--cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc-------cHHHHHhccCchhHhH
Confidence 54 4689999998887 68888999999999999999999999999999988653 3888998543 67999
Q ss_pred HHHHHhccCCccc
Q 000824 791 AIRQAAGDMRLMN 803 (1266)
Q Consensus 791 lIrqc~gry~l~N 803 (1266)
+|++|.+||+++|
T Consensus 149 li~~c~~R~~~f~ 161 (212)
T PF04548_consen 149 LIEKCGGRYHVFN 161 (212)
T ss_dssp HHHHTTTCEEECC
T ss_pred HhhhcCCEEEEEe
Confidence 9999999998766
No 6
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.89 E-value=6.5e-23 Score=212.31 Aligned_cols=158 Identities=23% Similarity=0.363 Sum_probs=132.2
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccC-cccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDA-FQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda-~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
++|+|+|+||+|||||+|+|+|+..+.+.. .+++|+.++.....+.|.+++||||||+.++.. ..+.+.+.+.+++
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~---~~~~~~~~i~~~~ 77 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV---SPEQLSKEIVRCL 77 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccC---ChHHHHHHHHHHH
Confidence 489999999999999999999998887654 567888888888889999999999999988642 2344555555554
Q ss_pred hc--CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCCCCCCCCCcchhhhhhccCHHHHHH
Q 000824 714 KK--TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQQA 791 (1266)
Q Consensus 714 k~--~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~Pde~ng~~~syEefL~qRS~~LQql 791 (1266)
.. .++|++|||++++. ++..+..+++.|++.||..+|+++||||||+|.+.+ ..+++|+......++.+
T Consensus 78 ~~~~~g~~~illVi~~~~--~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~-------~~~~~~~~~~~~~l~~l 148 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGR--FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG-------GTLEDYLENSCEALKRL 148 (196)
T ss_pred HhcCCCCEEEEEEEECCC--cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC-------CcHHHHHHhccHHHHHH
Confidence 43 46899999988764 677889999999999999999999999999999864 26788998877899999
Q ss_pred HHHHhccCCcccc
Q 000824 792 IRQAAGDMRLMNP 804 (1266)
Q Consensus 792 Irqc~gry~l~NP 804 (1266)
+++|.++|+.++.
T Consensus 149 ~~~c~~r~~~f~~ 161 (196)
T cd01852 149 LEKCGGRYVAFNN 161 (196)
T ss_pred HHHhCCeEEEEeC
Confidence 9999999877653
No 7
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=2.2e-20 Score=215.66 Aligned_cols=220 Identities=21% Similarity=0.246 Sum_probs=155.1
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHcchhHHHHhhhcCC
Q 000824 528 VVQHPRVNGAISHTQTQPIEDPGNGEAEEYDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGR 607 (1266)
Q Consensus 528 ~~q~arlNgk~dlsqaeavADli~s~s~E~~eLr~ELq~LR~kLlrLv~Rlg~sPe~~~laQvLyrLgLaE~Li~~~~~r 607 (1266)
=++|+++|||+|++||++++|++.+.+ ..+++..+.++...|.++.+.+. .+.+..+...+..+......
T Consensus 112 Fs~RAFLNgK~DLtqAEai~dLI~A~t--e~a~r~A~~~l~G~ls~~i~~lr--------~~li~~~a~vEa~IDfpeed 181 (454)
T COG0486 112 FSKRAFLNGKLDLTQAEAIADLIDAKT--EQAARIALRQLQGALSQLINELR--------EALLELLAQVEANIDFPEED 181 (454)
T ss_pred chHHHHhcCCccHHHHHHHHHHHhCCC--HHHHHHHHHHcCCcHHHHHHHHH--------HHHHHHHHHheEeCCCCccc
Confidence 378999999999999999999999999 57777778777777776666554 22333333333333322221
Q ss_pred CCCcchhHHH----H----HHHHHHHhC-CCCCCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEE
Q 000824 608 VGAFSFDRAS----A----MAEQLEAAG-QEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGT 678 (1266)
Q Consensus 608 L~~fs~d~a~----~----LaeqLe~~~-~e~lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~ge 678 (1266)
++....+..+ . +.+.+.... ...++.+++|+++|+||||||||+|+|+++.++++...++||+++.+.+..
T Consensus 182 i~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~ 261 (454)
T COG0486 182 IEELVLEKIREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDIN 261 (454)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEE
Confidence 2111112121 1 222222222 245677899999999999999999999999999999999999999999999
Q ss_pred ECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEE
Q 000824 679 VQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVV 758 (1266)
Q Consensus 679 I~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVV 758 (1266)
+.|+|++++||+|++++. +......+.+..+. ...+|+||||++.+.. .+..+..++..+ ...+++++|
T Consensus 262 i~G~pv~l~DTAGiRet~-d~VE~iGIeRs~~~---i~~ADlvL~v~D~~~~-~~~~d~~~~~~~------~~~~~~i~v 330 (454)
T COG0486 262 LNGIPVRLVDTAGIRETD-DVVERIGIERAKKA---IEEADLVLFVLDASQP-LDKEDLALIELL------PKKKPIIVV 330 (454)
T ss_pred ECCEEEEEEecCCcccCc-cHHHHHHHHHHHHH---HHhCCEEEEEEeCCCC-CchhhHHHHHhc------ccCCCEEEE
Confidence 999999999999999873 44555555554432 2359999999877642 444555555411 225789999
Q ss_pred EeccCCCCCC
Q 000824 759 LTHAASAPPD 768 (1266)
Q Consensus 759 LTKaDeL~Pd 768 (1266)
+||.|...+.
T Consensus 331 ~NK~DL~~~~ 340 (454)
T COG0486 331 LNKADLVSKI 340 (454)
T ss_pred Eechhccccc
Confidence 9999987653
No 8
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.70 E-value=7.7e-17 Score=188.36 Aligned_cols=217 Identities=18% Similarity=0.166 Sum_probs=129.1
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHcchhHHHHhhhcCCC
Q 000824 529 VQHPRVNGAISHTQTQPIEDPGNGEAEEYDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRV 608 (1266)
Q Consensus 529 ~q~arlNgk~dlsqaeavADli~s~s~E~~eLr~ELq~LR~kLlrLv~Rlg~sPe~~~laQvLyrLgLaE~Li~~~~~rL 608 (1266)
+.||++|||||++|||+++|++.+.+. .+.+..+.+|+..|.+.+.+++ .+.+..+...+..+....+..
T Consensus 103 T~RAflNGk~DL~qaEav~dlI~a~t~--~~~~~A~~~l~G~ls~~~~~~r--------~~l~~~~a~iea~iDf~ee~~ 172 (442)
T TIGR00450 103 TQRAFLNGKMDLTQAEAINELILAPNN--KVKDIALNKLAGELDQKIEAIR--------KSLLQLLAQVEVNIDYEEDDD 172 (442)
T ss_pred hHHHHhcCCccHHHHHHHHHHHhCCCH--HHHHHHHHhcCcHHHHHHHHHH--------HHHHHHHHHeeEECCcCCCCc
Confidence 789999999999999999999999995 4444444444444443333322 111111111111111100000
Q ss_pred CCc----chhH-HHHHHHHHHHhCCCCCCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEE
Q 000824 609 GAF----SFDR-ASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIK 683 (1266)
Q Consensus 609 ~~f----s~d~-a~~LaeqLe~~~~e~lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~Gip 683 (1266)
... .... ...+...+.......++.+++|+|+|++|||||||+|.|++.....+..++++|++.......+.|.+
T Consensus 173 ~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~ 252 (442)
T TIGR00450 173 EQDSLNQLLLSIIAELKDILNSYKLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL 252 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE
Confidence 000 0000 00122222222123455678999999999999999999999877677778889998888888889999
Q ss_pred EEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccC
Q 000824 684 VRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAA 763 (1266)
Q Consensus 684 VtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaD 763 (1266)
+.++||||+.+.. +......+ .....++ ..+|+++||++++.. .+..+. .+..+.. ...++|+|+||+|
T Consensus 253 v~l~DTaG~~~~~-~~ie~~gi-~~~~~~~--~~aD~il~V~D~s~~-~s~~~~-~l~~~~~-----~~~piIlV~NK~D 321 (442)
T TIGR00450 253 IKLLDTAGIREHA-DFVERLGI-EKSFKAI--KQADLVIYVLDASQP-LTKDDF-LIIDLNK-----SKKPFILVLNKID 321 (442)
T ss_pred EEEeeCCCcccch-hHHHHHHH-HHHHHHH--hhCCEEEEEEECCCC-CChhHH-HHHHHhh-----CCCCEEEEEECcc
Confidence 9999999997532 11111111 1112233 358999999887642 222222 2332221 2478999999999
Q ss_pred CCC
Q 000824 764 SAP 766 (1266)
Q Consensus 764 eL~ 766 (1266)
...
T Consensus 322 l~~ 324 (442)
T TIGR00450 322 LKI 324 (442)
T ss_pred CCC
Confidence 753
No 9
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.69 E-value=1.1e-16 Score=187.22 Aligned_cols=216 Identities=23% Similarity=0.244 Sum_probs=137.4
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHcchhHHHHhhhcCCC
Q 000824 529 VQHPRVNGAISHTQTQPIEDPGNGEAEEYDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRV 608 (1266)
Q Consensus 529 ~q~arlNgk~dlsqaeavADli~s~s~E~~eLr~ELq~LR~kLlrLv~Rlg~sPe~~~laQvLyrLgLaE~Li~~~~~rL 608 (1266)
++|+++|||||++|||++.|++++.+ ..+++..+.+|+..|.+++..+. .+.+..++..+..++...+..
T Consensus 111 t~RAflngk~dL~qaEai~~li~a~t--~~~~~~al~~l~G~l~~~~~~~r--------~~l~~~~a~iea~iDf~ee~~ 180 (449)
T PRK05291 111 TKRAFLNGKLDLTQAEAIADLIDAKT--EAAARLALRQLQGALSKLINELR--------EELLELLALVEAAIDFPEEDI 180 (449)
T ss_pred hHHHHhcCCcCHHHHHHHHHHHhCCC--HHHHHHHHHhcCcHHHHHHHHHH--------HHHHHHHHHheEEccCCCCCc
Confidence 78999999999999999999999999 57777788888887776666554 112222222222122111111
Q ss_pred CCcch----hHHHHHHHHHHHh----C-CCCCCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE
Q 000824 609 GAFSF----DRASAMAEQLEAA----G-QEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV 679 (1266)
Q Consensus 609 ~~fs~----d~a~~LaeqLe~~----~-~e~lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI 679 (1266)
..... .....+...|... . ...+..+++|+|+|++|||||||+|+|++.....+..++++|++.......+
T Consensus 181 ~~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~ 260 (449)
T PRK05291 181 EFLSDEKILEKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL 260 (449)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE
Confidence 00111 1111223333221 1 1234456899999999999999999999987766777888888887777788
Q ss_pred CCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEE
Q 000824 680 QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVL 759 (1266)
Q Consensus 680 ~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVL 759 (1266)
.|.++.++||||+.++. +......+.+.+ .++ ..+|+++||++++.. ....+..+ +.. ....++++|+
T Consensus 261 ~g~~i~l~DT~G~~~~~-~~ie~~gi~~~~-~~~--~~aD~il~VvD~s~~-~s~~~~~~---l~~----~~~~piiiV~ 328 (449)
T PRK05291 261 DGIPLRLIDTAGIRETD-DEVEKIGIERSR-EAI--EEADLVLLVLDASEP-LTEEDDEI---LEE----LKDKPVIVVL 328 (449)
T ss_pred CCeEEEEEeCCCCCCCc-cHHHHHHHHHHH-HHH--HhCCEEEEEecCCCC-CChhHHHH---HHh----cCCCCcEEEE
Confidence 99999999999996531 111111111121 222 358999999877532 22233322 222 2247899999
Q ss_pred eccCCCC
Q 000824 760 THAASAP 766 (1266)
Q Consensus 760 TKaDeL~ 766 (1266)
||+|...
T Consensus 329 NK~DL~~ 335 (449)
T PRK05291 329 NKADLTG 335 (449)
T ss_pred Ehhhccc
Confidence 9999864
No 10
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=4.5e-15 Score=163.20 Aligned_cols=223 Identities=18% Similarity=0.270 Sum_probs=139.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
.+.+|+|+|+||+|||||||+||+.....++....+|.........+.+..+++.||||+.+.. ..+.+....++++
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~---~~D~~~r~~~~d~ 114 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGK---DKDAEHRQLYRDY 114 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccch---hhhHHHHHHHHHH
Confidence 4679999999999999999999987777777666677666666666788899999999998863 3334455556666
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCCCC-----CCCCCcchhhhhhccCHH
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPDG-----PNGTASSYDMFVTQRSHV 787 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~Pde-----~ng~~~syEefL~qRS~~ 787 (1266)
+. +.|+||++++++.+... .|..+++.+.-... .+++++++|++|.+.|-. .......++.|+..+-..
T Consensus 115 l~--~~DLvL~l~~~~draL~-~d~~f~~dVi~~~~---~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~ 188 (296)
T COG3596 115 LP--KLDLVLWLIKADDRALG-TDEDFLRDVIILGL---DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEA 188 (296)
T ss_pred hh--hccEEEEeccCCCcccc-CCHHHHHHHHHhcc---CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHH
Confidence 54 48899999888765444 56677777655432 389999999999988731 111112333333332222
Q ss_pred HHHHHHHHhccCCcccce------------eeccccccccCCCCCCcccCCC-CCchHHHHHHHHHHHHHHHHhhhhccc
Q 000824 788 VQQAIRQAAGDMRLMNPV------------SLVENHSACRTNRAGQRVLPNG-QVWKPHLLLLSFASKILAEANTLLKLQ 854 (1266)
Q Consensus 788 LQqlIrqc~gry~l~NPV------------~LVEN~p~C~tNe~gekvLPng-qdWi~qLllLc~v~kIL~eA~sfLkf~ 854 (1266)
+.+.+ +..+|+ .++.-+..|.+.+...+..... +.|+ .......++. .|.
T Consensus 189 ~~~~~-------q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~~a~~~~d~~~--------~~~~~~q~~~--~~~ 251 (296)
T COG3596 189 LGRLF-------QEVKPVVAVSGRLPWGLKELVRALITALPVEARSPLAARLQDELR--------TQSARTQART--QFL 251 (296)
T ss_pred HHHHH-------hhcCCeEEeccccCccHHHHHHHHHHhCcccccchhhhhhhhHHH--------HHHHHHHHHH--Hhh
Confidence 32322 233443 2333445555555544443222 1222 2222222222 455
Q ss_pred CCCCCCCCcccCCCCChHHHHHHhhhc
Q 000824 855 DTPPGKPFSTRSRAPPLPFLLSSLLQS 881 (1266)
Q Consensus 855 d~~~gk~f~~r~r~pPLP~llsslLq~ 881 (1266)
+.+.+..|++....+.++.+++.+++.
T Consensus 252 ~s~v~~~~~ti~~~s~i~~~~~tI~~~ 278 (296)
T COG3596 252 ESPVDRIFDTIQTVSLIYSVARTIIRA 278 (296)
T ss_pred cchHHHHHHHHhhchHHHHHHHHHHHh
Confidence 666777777776666666677666653
No 11
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.54 E-value=5.8e-14 Score=133.64 Aligned_cols=116 Identities=21% Similarity=0.240 Sum_probs=84.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhc
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKK 715 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~ 715 (1266)
+|+|+|++|+|||||+|+|++.....++..+++|+........+.+.++.|+||||+.+........ .....+.+.+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~-- 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG-KEIRKFLEQI-- 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHH--
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHH--
Confidence 6899999999999999999998777777778888877555667899999999999998753211111 2333333433
Q ss_pred CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEec
Q 000824 716 TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTH 761 (1266)
Q Consensus 716 ~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTK 761 (1266)
..+|+++||+++.. .....+..+++.|. ..+++++|+||
T Consensus 78 ~~~d~ii~vv~~~~-~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASN-PITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTS-HSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred HHCCEEEEEEECCC-CCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 46899999988654 22223455666662 35899999997
No 12
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=6.8e-14 Score=162.60 Aligned_cols=226 Identities=22% Similarity=0.242 Sum_probs=144.0
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHH----HcchhHHHHhh
Q 000824 528 VVQHPRVNGAISHTQTQPIEDPGNGEAEEYDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLY----RLGLAEQLRGR 603 (1266)
Q Consensus 528 ~~q~arlNgk~dlsqaeavADli~s~s~E~~eLr~ELq~LR~kLlrLv~Rlg~sPe~~~laQvLy----rLgLaE~Li~~ 603 (1266)
-+.++++|++.+++|++.+.|+|.+.+ ..+.+..+.++..-+..+.-+++ ..+.+.+. +.++.+..--.
T Consensus 162 ft~Raf~ngk~~Ltq~eg~~~lI~a~t--~~q~~~Al~~v~g~~~~l~~~~r-----~~lIe~~a~l~a~idf~e~~~l~ 234 (531)
T KOG1191|consen 162 FTRRAFLNGKLDLTQAEGIIDLIVAET--ESQRRAALDEVAGEALALCFGWR-----KILIEALAGLEARIDFEEERPLE 234 (531)
T ss_pred hhhhhhhccccchhhhcChhhhhhhhh--HhhhhhhhhhhcchhHHhhhhHH-----HHHHHHHhccceeechhhcCchh
Confidence 366889999999999999999999988 46677777777666533322211 11111111 11111110000
Q ss_pred hcCCCCCcchhHHH----HHHHHHHHhC-CCCCCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEE
Q 000824 604 NGGRVGAFSFDRAS----AMAEQLEAAG-QEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGT 678 (1266)
Q Consensus 604 ~~~rL~~fs~d~a~----~LaeqLe~~~-~e~lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~ge 678 (1266)
..+....+. ... .+...+.... .+.+..++.|+|+|++||||||++|+|+.+.+.+++..+++|++..+...+
T Consensus 235 ~~~t~~~~~--~~~~l~d~v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~ 312 (531)
T KOG1191|consen 235 EIETVEIFI--ESLSLLDDVLSHLNKADEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVT 312 (531)
T ss_pred hccchhhhh--HHHHHHHHHHHHHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEee
Confidence 000000011 111 1222222221 244667899999999999999999999999999999999999999999999
Q ss_pred ECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCC--CC-----
Q 000824 679 VQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGP--SI----- 751 (1266)
Q Consensus 679 I~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~--ei----- 751 (1266)
++|++++++||+|+.+...+......+.+.-++ ..+.|++++|+++... ....+..+.+.|... +. ..
T Consensus 313 ~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~---~~~advi~~vvda~~~-~t~sd~~i~~~l~~~-~~g~~~~~~~~ 387 (531)
T KOG1191|consen 313 VNGVPVRLSDTAGIREESNDGIEALGIERARKR---IERADVILLVVDAEES-DTESDLKIARILETE-GVGLVVIVNKM 387 (531)
T ss_pred cCCeEEEEEeccccccccCChhHHHhHHHHHHH---HhhcCEEEEEeccccc-ccccchHHHHHHHHh-ccceEEEeccc
Confidence 999999999999999843344444444444333 2358999999887432 233444444444332 21 11
Q ss_pred -CccEEEEEeccCCCCC
Q 000824 752 -WFNAIVVLTHAASAPP 767 (1266)
Q Consensus 752 -~k~tIVVLTKaDeL~P 767 (1266)
.++.|++.||.|..++
T Consensus 388 ~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 388 EKQRIILVANKSDLVSK 404 (531)
T ss_pred cccceEEEechhhccCc
Confidence 2788999999998765
No 13
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.50 E-value=3e-14 Score=165.08 Aligned_cols=212 Identities=18% Similarity=0.169 Sum_probs=134.1
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHcchhHHHHhhhcCCCCCcchhHHHHHHHHHH-
Q 000824 546 IEDPGNGEAEEYDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLE- 624 (1266)
Q Consensus 546 vADli~s~s~E~~eLr~ELq~LR~kLlrLv~Rlg~sPe~~~laQvLyrLgLaE~Li~~~~~rL~~fs~d~a~~LaeqLe- 624 (1266)
++|...+.++++.++.+.|......+.-.++++... .......-+|.||+.+-+.-...... -..+-...+.+.++
T Consensus 90 vVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~-~~e~~~~efyslG~g~~~~ISA~Hg~--Gi~dLld~v~~~l~~ 166 (444)
T COG1160 90 VVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL-KAEELAYEFYSLGFGEPVPISAEHGR--GIGDLLDAVLELLPP 166 (444)
T ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc-hhhhhHHHHHhcCCCCceEeehhhcc--CHHHHHHHHHhhcCC
Confidence 456666666666666555554433443334444432 22334445666776553322111110 00111123344432
Q ss_pred HhCCCCC--CCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhch
Q 000824 625 AAGQEPL--DFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQN 702 (1266)
Q Consensus 625 ~~~~e~l--k~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~n 702 (1266)
....+.. ..+++|+|+|+++||||||+|+|+|+.+..++...++|++......++++.++++|||+|+..... -...
T Consensus 167 ~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~k-i~e~ 245 (444)
T COG1160 167 DEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGK-ITES 245 (444)
T ss_pred cccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccc-cccc
Confidence 1111111 146899999999999999999999999999999999999999999999999999999999976421 1111
Q ss_pred HHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCC
Q 000824 703 EKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPP 767 (1266)
Q Consensus 703 eeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~P 767 (1266)
-+.+..++..-.....++|++|++++. .+...|..++..+.+. .+.++||+||||.+..
T Consensus 246 ~E~~Sv~rt~~aI~~a~vvllviDa~~-~~~~qD~~ia~~i~~~-----g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 246 VEKYSVARTLKAIERADVVLLVIDATE-GISEQDLRIAGLIEEA-----GRGIVIVVNKWDLVEE 304 (444)
T ss_pred eEEEeehhhHhHHhhcCEEEEEEECCC-CchHHHHHHHHHHHHc-----CCCeEEEEEccccCCc
Confidence 122222222222345899999988764 4666777777777664 6889999999998864
No 14
>COG1159 Era GTPase [General function prediction only]
Probab=99.49 E-value=2e-13 Score=151.64 Aligned_cols=125 Identities=18% Similarity=0.255 Sum_probs=101.8
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
.+..|+++|+||||||||+|+|+|+.+.+++.-+.||+.....-.+....+++||||||+..+ ....++.+.+.....
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p--k~~l~~~m~~~a~~s 82 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP--KHALGELMNKAARSA 82 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc--chHHHHHHHHHHHHH
Confidence 357899999999999999999999999999988888887666655667899999999999875 345566666666665
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPP 767 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~P 767 (1266)
+. .+|+||||++++. .+...|..+++.|+.. ..+.++++||.|...+
T Consensus 83 l~--dvDlilfvvd~~~-~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~ 129 (298)
T COG1159 83 LK--DVDLILFVVDADE-GWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKP 129 (298)
T ss_pred hc--cCcEEEEEEeccc-cCCccHHHHHHHHhhc-----CCCeEEEEEccccCCc
Confidence 54 5999999998874 3666787788888762 4789999999998865
No 15
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.45 E-value=1e-12 Score=156.02 Aligned_cols=205 Identities=22% Similarity=0.295 Sum_probs=125.9
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHcchhHHHHhhhcCCCCC-cchhHHHH-H
Q 000824 547 EDPGNGEAEEYDETREKLQMIRVKFLRLAHRL-----GQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGA-FSFDRASA-M 619 (1266)
Q Consensus 547 ADli~s~s~E~~eLr~ELq~LR~kLlrLv~Rl-----g~sPe~~~laQvLyrLgLaE~Li~~~~~rL~~-fs~d~a~~-L 619 (1266)
.+.....+.++.+|+.||+.||.+|.+.+..+ ...|....+.++|.++|+.+.++..+..++.. .....+|. +
T Consensus 252 ~~~~~~~~~~l~~m~~El~~lR~lle~q~~~l~~~~~~~~P~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l 331 (559)
T PRK12727 252 AAPAPQNDEELKQLRGELALMRQMIEREMNRLTDERLRGSPVRAQALELMDDYGFDAGLTRDVAMQIPADTELHRGRGLM 331 (559)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccChHHHHHHHHHHHCCCCHHHHHHHHHhhhcccchhhHHHHH
Confidence 34444566779999999999999997666543 34677888899999999999999998877644 33344452 3
Q ss_pred HHHHHH----hCCCCCCCccEEEEEccCCCCHHHHHHHHhcC--------cc--ccccCcccceeEEEEEEEE-------
Q 000824 620 AEQLEA----AGQEPLDFSCTIMVLGKTGVGKSATINSIFDE--------VK--FGTDAFQMGTKKVQDVVGT------- 678 (1266)
Q Consensus 620 aeqLe~----~~~e~lk~slrILLVGpTGVGKSTLINSLLGr--------~v--ftvda~rstTre~qei~ge------- 678 (1266)
...|.. ...+.++.+..|+|+|++|+|||||+.+|+.. .+ +..|.++.+..++...++.
T Consensus 332 ~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~ 411 (559)
T PRK12727 332 LGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH 411 (559)
T ss_pred HHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE
Confidence 333333 22344566789999999999999999999862 11 2345566543221111111
Q ss_pred --------------ECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHH
Q 000824 679 --------------VQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTIT 744 (1266)
Q Consensus 679 --------------I~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~ 744 (1266)
..++.++||||||+... +...+.++..+... .....++|++.+.. ..+ +..+.
T Consensus 412 ~a~d~~~L~~aL~~l~~~DLVLIDTaG~s~~------D~~l~eeL~~L~aa-~~~a~lLVLpAtss---~~D---l~eii 478 (559)
T PRK12727 412 EADSAESLLDLLERLRDYKLVLIDTAGMGQR------DRALAAQLNWLRAA-RQVTSLLVLPANAH---FSD---LDEVV 478 (559)
T ss_pred ecCcHHHHHHHHHHhccCCEEEecCCCcchh------hHHHHHHHHHHHHh-hcCCcEEEEECCCC---hhH---HHHHH
Confidence 13467899999999532 12223333322111 12235566555432 122 22233
Q ss_pred HHhCCCCCccEEEEEeccCCCC
Q 000824 745 DIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 745 eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+.|.. ....-+||||+|+..
T Consensus 479 ~~f~~--~~~~gvILTKlDEt~ 498 (559)
T PRK12727 479 RRFAH--AKPQGVVLTKLDETG 498 (559)
T ss_pred HHHHh--hCCeEEEEecCcCcc
Confidence 33332 245779999999753
No 16
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.45 E-value=5e-13 Score=147.83 Aligned_cols=125 Identities=26% Similarity=0.412 Sum_probs=85.3
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccC-------cccceeEE--EEEEEEECC--EEEEEEeCCCCCCCccchhc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDA-------FQMGTKKV--QDVVGTVQG--IKVRVIDTPGLLPSWSDQRQ 701 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda-------~rstTre~--qei~geI~G--ipVtVIDTPGL~DS~gd~~~ 701 (1266)
+.++|+|+|++|+|||||+|+|++...+.... ....|... ........| .+++|||||||++.. .
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~----~ 78 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNI----N 78 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccc----c
Confidence 46799999999999999999999987655432 11223222 233334456 569999999997753 2
Q ss_pred hHHHHHHHHHhhh--------------------cCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEec
Q 000824 702 NEKILHSVKRFIK--------------------KTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTH 761 (1266)
Q Consensus 702 neeIlkeIKkfLk--------------------~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTK 761 (1266)
+...++.|.+|+. ..++|++||++..+.......|..+|+.+.. ..++|+|+||
T Consensus 79 ~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~VinK 152 (276)
T cd01850 79 NSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVIAK 152 (276)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEEEC
Confidence 3333333332221 2358999999887765566567777777754 3789999999
Q ss_pred cCCCCC
Q 000824 762 AASAPP 767 (1266)
Q Consensus 762 aDeL~P 767 (1266)
+|.+.+
T Consensus 153 ~D~l~~ 158 (276)
T cd01850 153 ADTLTP 158 (276)
T ss_pred CCcCCH
Confidence 999764
No 17
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.43 E-value=6.6e-13 Score=136.65 Aligned_cols=121 Identities=17% Similarity=0.291 Sum_probs=88.8
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIK 714 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk 714 (1266)
++|+|+|.+||||||++|+|+|.. ..++.++++|.+.......+.+.++.+|||||+.+-.. ....+.+ .++++.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~-~s~ee~v---~~~~l~ 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSS-KSEEERV---ARDYLL 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSS-SSHHHHH---HHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCC-CCcHHHH---HHHHHh
Confidence 479999999999999999999997 56778999999988888888999999999999876321 1222333 244565
Q ss_pred cCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCCC
Q 000824 715 KTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPD 768 (1266)
Q Consensus 715 ~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~Pd 768 (1266)
..++|++++|++++. . ..+..++.++.+. ..++++|+||+|++...
T Consensus 76 ~~~~D~ii~VvDa~~--l-~r~l~l~~ql~e~-----g~P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 76 SEKPDLIIVVVDATN--L-ERNLYLTLQLLEL-----GIPVVVVLNKMDEAERK 121 (156)
T ss_dssp HTSSSEEEEEEEGGG--H-HHHHHHHHHHHHT-----TSSEEEEEETHHHHHHT
T ss_pred hcCCCEEEEECCCCC--H-HHHHHHHHHHHHc-----CCCEEEEEeCHHHHHHc
Confidence 678999999987763 2 2344556666553 58999999999987643
No 18
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.41 E-value=1e-12 Score=152.62 Aligned_cols=123 Identities=16% Similarity=0.085 Sum_probs=98.3
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIK 714 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk 714 (1266)
..|+|||++|||||||+|.|+|+..+.++.++++|++-....+.|.+.++.||||+||.+... +.-...+..+....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~-~~l~~~i~~Qa~~A-- 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE-DELQELIREQALIA-- 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc-hHHHHHHHHHHHHH--
Confidence 589999999999999999999999999999999999999999999999999999999975321 12223333332222
Q ss_pred cCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 715 KTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 715 ~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
...+|++|||++... ..+..|..+.+.|.. .++++|+|.||+|...
T Consensus 81 i~eADvilfvVD~~~-Git~~D~~ia~~Lr~-----~~kpviLvvNK~D~~~ 126 (444)
T COG1160 81 IEEADVILFVVDGRE-GITPADEEIAKILRR-----SKKPVILVVNKIDNLK 126 (444)
T ss_pred HHhCCEEEEEEeCCC-CCCHHHHHHHHHHHh-----cCCCEEEEEEcccCch
Confidence 346999999987653 467788888877763 3799999999999763
No 19
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.38 E-value=7.1e-12 Score=121.26 Aligned_cols=122 Identities=24% Similarity=0.314 Sum_probs=84.1
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
+++|+|+|++|+|||||+|+|++.....+...+++|.........+.+.++.++||||+.+... ...... ......++
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~~~~~~-~~~~~~~~ 78 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETED-EIEKIG-IERAREAI 78 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcc-hHHHHH-HHHHHHHH
Confidence 3589999999999999999999987655566677777776666677889999999999976421 111111 12222232
Q ss_pred hcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPP 767 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~P 767 (1266)
..+|+++||++++.. ....+..++.. ....++++|+||+|....
T Consensus 79 --~~~~~~v~v~d~~~~-~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 79 --EEADLVLFVIDASRG-LDEEDLEILEL-------PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred --hhCCEEEEEEECCCC-CCHHHHHHHHh-------hcCCCEEEEEEchhcCCc
Confidence 368999999887742 22223333222 235899999999998753
No 20
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.38 E-value=9.8e-12 Score=120.00 Aligned_cols=122 Identities=18% Similarity=0.216 Sum_probs=81.8
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
.++|+|+|++|+|||||+|+|++...........+++..........+..+.++||||+.... ......+.+.....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~--~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPK--KKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcch--HHHHHHHHHHHHHHH
Confidence 468999999999999999999998765554444455544444444566889999999997542 111122222222222
Q ss_pred hcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
..+|+++||++++.. ....+..+++.+... ..+.++|+||+|..
T Consensus 81 --~~~d~i~~v~d~~~~-~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~ 124 (168)
T cd04163 81 --KDVDLVLFVVDASEP-IGEGDEFILELLKKS-----KTPVILVLNKIDLV 124 (168)
T ss_pred --HhCCEEEEEEECCCc-cCchHHHHHHHHHHh-----CCCEEEEEEchhcc
Confidence 358999999887643 333444555555432 46899999999976
No 21
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.37 E-value=1.3e-12 Score=150.48 Aligned_cols=202 Identities=17% Similarity=0.220 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh------CCCchhHHHHHHHHHcchhHHHHhhhcCCCCCc----chhHHHH-----HHH
Q 000824 557 YDETREKLQMIRVKFLRLAHRL------GQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAF----SFDRASA-----MAE 621 (1266)
Q Consensus 557 ~~eLr~ELq~LR~kLlrLv~Rl------g~sPe~~~laQvLyrLgLaE~Li~~~~~rL~~f----s~d~a~~-----Lae 621 (1266)
.+.|+.||+.||.+|..++..+ ...|....+.++|..+|+.+.+++.+.+.++.. +.+.++. +..
T Consensus 43 ~~~~~~El~~lr~ll~~~~~~~~w~~~~~~~p~~~~l~~~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (374)
T PRK14722 43 NDTVMQELGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAA 122 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcchhccCcHHHHHHHHHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHh
Confidence 3689999999999998766543 256878889999999999999999988776431 2233332 222
Q ss_pred HHHHhCC--CCCCCccEEEEEccCCCCHHHHHHHHhcCc----------cccccCcccceeEEEEEE-------------
Q 000824 622 QLEAAGQ--EPLDFSCTIMVLGKTGVGKSATINSIFDEV----------KFGTDAFQMGTKKVQDVV------------- 676 (1266)
Q Consensus 622 qLe~~~~--e~lk~slrILLVGpTGVGKSTLINSLLGr~----------vftvda~rstTre~qei~------------- 676 (1266)
.+..... ..+..+..|+|+||||||||||+.+|+++. .++.+.|+++..+++..+
T Consensus 123 ~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~ 202 (374)
T PRK14722 123 NLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKD 202 (374)
T ss_pred cchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCC
Confidence 2222211 224456799999999999999999998641 123455554333222111
Q ss_pred --------EEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhC
Q 000824 677 --------GTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFG 748 (1266)
Q Consensus 677 --------geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG 748 (1266)
..+.+..++||||||+.. .+..+..++..+.....+..+++|++++....+ -..+++.+....+
T Consensus 203 ~~~l~~~l~~l~~~DlVLIDTaG~~~------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~--l~evi~~f~~~~~ 274 (374)
T PRK14722 203 GGDLQLALAELRNKHMVLIDTIGMSQ------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT--LNEVVQAYRSAAG 274 (374)
T ss_pred cccHHHHHHHhcCCCEEEEcCCCCCc------ccHHHHHHHHHHhccCCCCeEEEEecCccChHH--HHHHHHHHHHhhc
Confidence 112456789999999853 223455555544333446667888777654221 1122333333322
Q ss_pred CC---CCccEEEEEeccCCCC
Q 000824 749 PS---IWFNAIVVLTHAASAP 766 (1266)
Q Consensus 749 ~e---i~k~tIVVLTKaDeL~ 766 (1266)
.. .....-+||||.|+..
T Consensus 275 ~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 275 QPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred ccccccCCCCEEEEeccccCC
Confidence 10 0124568899999875
No 22
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.37 E-value=2e-12 Score=139.96 Aligned_cols=129 Identities=26% Similarity=0.448 Sum_probs=96.2
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcCcccccc--Cc----ccceeEEEEEEEEE--CC--EEEEEEeCCCCCCCccchh
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDEVKFGTD--AF----QMGTKKVQDVVGTV--QG--IKVRVIDTPGLLPSWSDQR 700 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr~vftvd--a~----rstTre~qei~geI--~G--ipVtVIDTPGL~DS~gd~~ 700 (1266)
..+.++|++||++|.||||++|+|+...+...+ .+ -.-|.+.......+ .| .+++|||||||+| +.
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD----qI 118 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD----QI 118 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc----cc
Confidence 346789999999999999999999987554321 11 11233443333333 44 4679999999965 56
Q ss_pred chHHHHHHHHHhhhc--------------------CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEe
Q 000824 701 QNEKILHSVKRFIKK--------------------TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLT 760 (1266)
Q Consensus 701 ~neeIlkeIKkfLk~--------------------~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLT 760 (1266)
.|+..+.-|.+|+.. .+.||+||+++.+.+.+...|.++|+.|.+. .+++.|+.
T Consensus 119 nN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPVIa 192 (336)
T KOG1547|consen 119 NNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPVIA 192 (336)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeeeEe
Confidence 666666666555542 4679999999999999999999999999987 68999999
Q ss_pred ccCCCCCCC
Q 000824 761 HAASAPPDG 769 (1266)
Q Consensus 761 KaDeL~Pde 769 (1266)
|+|.+.-++
T Consensus 193 kaDtlTleE 201 (336)
T KOG1547|consen 193 KADTLTLEE 201 (336)
T ss_pred ecccccHHH
Confidence 999886543
No 23
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.36 E-value=6.6e-12 Score=137.49 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=84.5
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhc
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKK 715 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~ 715 (1266)
+|+|+|++|||||||+|+|+++....++..+.+|+..........+.++.|+||||+.+.. ......+.+....++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~--~~l~~~~~~~~~~~l~- 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK--HSLNRLMMKEARSAIG- 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc--chHHHHHHHHHHHHHh-
Confidence 7999999999999999999999877777777788765544444566789999999997541 1223334444444443
Q ss_pred CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 716 TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 716 ~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.+|+++||++++.. ...+..++..+.. ...++++|+||+|...
T Consensus 79 -~aDvvl~VvD~~~~--~~~~~~i~~~l~~-----~~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 79 -GVDLILFVVDSDQW--NGDGEFVLTKLQN-----LKRPVVLTRNKLDNKF 121 (270)
T ss_pred -hCCEEEEEEECCCC--CchHHHHHHHHHh-----cCCCEEEEEECeeCCC
Confidence 58999999887643 2222334444433 2478999999999753
No 24
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=99.36 E-value=7.4e-13 Score=152.53 Aligned_cols=176 Identities=17% Similarity=0.264 Sum_probs=116.5
Q ss_pred CchhHHHHHHHHHcchhHHHHhhhcCCCCCc-chhHHHH-HHHHHHHhCCCCCCCccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 581 TPHNVVVAQVLYRLGLAEQLRGRNGGRVGAF-SFDRASA-MAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 581 sPe~~~laQvLyrLgLaE~Li~~~~~rL~~f-s~d~a~~-LaeqLe~~~~e~lk~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
++......+.+.+.++...+.+...+..... .+..+|. +...+.... ....+..|+||||||||||||+++|+++.
T Consensus 150 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 150 SPTRLNLINELLRAGLELEILDMKDESYEDLRYFSEKLRKLLLSLIENL--IVEQKRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred chhhHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHhhcccc--ccccCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 4444455556666666555544333322111 1222221 111111111 12347899999999999999999999853
Q ss_pred ----------cccccCcccceeEEEEEEEEECCEEEEEEeCCC---------------CCCCccchhchHHHHHHHHHhh
Q 000824 659 ----------KFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPG---------------LLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 659 ----------vftvda~rstTre~qei~geI~GipVtVIDTPG---------------L~DS~gd~~~neeIlkeIKkfL 713 (1266)
.+++|+||+++.+|++.|+.+.|+||.++++|- |.|+.|++..+...+.+++.++
T Consensus 228 ~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~ 307 (407)
T COG1419 228 VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELI 307 (407)
T ss_pred HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHH
Confidence 256799999999999999999888864444443 2334444566788889999998
Q ss_pred hcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
......-+.||++++.+..+ |+.+.+.|+. ....-++|||.|+..
T Consensus 308 ~~~~~i~~~Lvlsat~K~~d------lkei~~~f~~--~~i~~~I~TKlDET~ 352 (407)
T COG1419 308 DVSHSIEVYLVLSATTKYED------LKEIIKQFSL--FPIDGLIFTKLDETT 352 (407)
T ss_pred hccccceEEEEEecCcchHH------HHHHHHHhcc--CCcceeEEEcccccC
Confidence 87756667788888876544 7888888874 455668899999874
No 25
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.36 E-value=1.2e-12 Score=145.49 Aligned_cols=126 Identities=24% Similarity=0.443 Sum_probs=81.8
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccC-c------ccceeEEEEEEEEE--CC--EEEEEEeCCCCCCCccchhc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDA-F------QMGTKKVQDVVGTV--QG--IKVRVIDTPGLLPSWSDQRQ 701 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda-~------rstTre~qei~geI--~G--ipVtVIDTPGL~DS~gd~~~ 701 (1266)
..++|||+|.+|+|||||||+|++........ + ...+..+......+ .+ ++++|||||||++. ..
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~----i~ 78 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDN----ID 78 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSS----ST
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcccc----cc
Confidence 35799999999999999999999986654431 1 11122222222222 33 56899999999764 34
Q ss_pred hHHHHHHHHHhhhc-------------------CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEecc
Q 000824 702 NEKILHSVKRFIKK-------------------TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHA 762 (1266)
Q Consensus 702 neeIlkeIKkfLk~-------------------~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKa 762 (1266)
+...+..|..|+.. .++|++||+++.+.+++.+.|...|+.|.+ +.|+|.|+.|+
T Consensus 79 n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~------~vNvIPvIaKa 152 (281)
T PF00735_consen 79 NSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK------RVNVIPVIAKA 152 (281)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT------TSEEEEEESTG
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc------cccEEeEEecc
Confidence 44444555444442 357999999999888888888888888865 47899999999
Q ss_pred CCCCCC
Q 000824 763 ASAPPD 768 (1266)
Q Consensus 763 DeL~Pd 768 (1266)
|.+.++
T Consensus 153 D~lt~~ 158 (281)
T PF00735_consen 153 DTLTPE 158 (281)
T ss_dssp GGS-HH
T ss_pred cccCHH
Confidence 988753
No 26
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.36 E-value=1.1e-11 Score=126.78 Aligned_cols=126 Identities=21% Similarity=0.222 Sum_probs=85.1
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCc-cccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEV-KFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~-vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
...++|+|+|++|+|||||+|+|++.. ...++...++|..+..+. +. ..+.|+||||+............+...+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE--VN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE--eC-CcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 456799999999999999999999975 444555566676654332 23 37999999999764322222334444445
Q ss_pred HhhhcC-CCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 711 RFIKKT-PPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 711 kfLk~~-~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.+++.. ..++++||++.+. ++...+..+++.+.. ...++++|+||+|...
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~-~~~~~~~~~~~~~~~-----~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRH-PLKELDLEMLEWLRE-----RGIPVLIVLTKADKLK 143 (179)
T ss_pred HHHHhChhhcEEEEEecCCC-CCCHHHHHHHHHHHH-----cCCCEEEEEECcccCC
Confidence 555543 4688999987653 344455555555543 2578999999999764
No 27
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.36 E-value=9e-12 Score=120.87 Aligned_cols=119 Identities=17% Similarity=0.159 Sum_probs=83.5
Q ss_pred EEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCC
Q 000824 638 MVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTP 717 (1266)
Q Consensus 638 LLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~ 717 (1266)
+|+|.+|||||||+|+|++.........+++|.........+.+..+.|+||||+.+.. ......+.+....++ ..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~--~~~~~~~~~~~~~~~--~~ 76 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDD--EGISKEIREQAELAI--EE 76 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCch--hHHHHHHHHHHHHHH--Hh
Confidence 48999999999999999998665555667777777777777889999999999996531 111222333333333 35
Q ss_pred CCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 718 PDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 718 pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+|+++||++... .....+..+++.+... ..++++|+||+|...
T Consensus 77 ~d~ii~v~d~~~-~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~ 119 (157)
T cd01894 77 ADVILFVVDGRE-GLTPADEEIAKYLRKS-----KKPVILVVNKVDNIK 119 (157)
T ss_pred CCEEEEEEeccc-cCCccHHHHHHHHHhc-----CCCEEEEEECcccCC
Confidence 899999987653 2334455555555442 488999999999764
No 28
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.35 E-value=4.5e-12 Score=144.06 Aligned_cols=128 Identities=26% Similarity=0.399 Sum_probs=95.8
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCccccc---cCccc----ceeEEEEEEEEE--CC--EEEEEEeCCCCCCCccchh
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFGT---DAFQM----GTKKVQDVVGTV--QG--IKVRVIDTPGLLPSWSDQR 700 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~vftv---da~rs----tTre~qei~geI--~G--ipVtVIDTPGL~DS~gd~~ 700 (1266)
...++|+++|+.|.|||||||+|++..+... +..+. .|..+......+ +| ..++|||||||+|. .
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~----i 96 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF----I 96 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc----c
Confidence 4578999999999999999999999844322 12222 233444444444 33 56899999999764 4
Q ss_pred chHHHHHHHHHhhhc--------------------CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEe
Q 000824 701 QNEKILHSVKRFIKK--------------------TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLT 760 (1266)
Q Consensus 701 ~neeIlkeIKkfLk~--------------------~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLT 760 (1266)
.+...+..|..|+.. .++|++||+++.+.+.+...|..+|+.|.+. .|+|.|+.
T Consensus 97 dNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~ 170 (373)
T COG5019 97 DNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIA 170 (373)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeee
Confidence 555666666555542 3689999999999999999999999998775 68999999
Q ss_pred ccCCCCCCC
Q 000824 761 HAASAPPDG 769 (1266)
Q Consensus 761 KaDeL~Pde 769 (1266)
|+|.+.+++
T Consensus 171 KaD~lT~~E 179 (373)
T COG5019 171 KADTLTDDE 179 (373)
T ss_pred ccccCCHHH
Confidence 999998654
No 29
>PRK00089 era GTPase Era; Reviewed
Probab=99.34 E-value=9.8e-12 Score=136.71 Aligned_cols=123 Identities=19% Similarity=0.210 Sum_probs=84.8
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
....|+|+|++|||||||+|+|+|+....++..+.+|+..........+.+++|+||||+.+.. ....+.+......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~--~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK--RALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch--hHHHHHHHHHHHHH
Confidence 3568999999999999999999999887766666666554433333356899999999997642 12223333333333
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+ ..+|+++||++++. .....+..+++.+.. ...++++|+||+|..
T Consensus 82 ~--~~~D~il~vvd~~~-~~~~~~~~i~~~l~~-----~~~pvilVlNKiDl~ 126 (292)
T PRK00089 82 L--KDVDLVLFVVDADE-KIGPGDEFILEKLKK-----VKTPVILVLNKIDLV 126 (292)
T ss_pred H--hcCCEEEEEEeCCC-CCChhHHHHHHHHhh-----cCCCEEEEEECCcCC
Confidence 3 35899999988764 344444555555542 257899999999986
No 30
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.33 E-value=6.2e-12 Score=146.68 Aligned_cols=195 Identities=17% Similarity=0.256 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC------CCchhHHHHHHHHHcchhHHHHhhhcCCCCC-cchhHHH-----HHHHHHHH
Q 000824 558 DETREKLQMIRVKFLRLAHRLG------QTPHNVVVAQVLYRLGLAEQLRGRNGGRVGA-FSFDRAS-----AMAEQLEA 625 (1266)
Q Consensus 558 ~eLr~ELq~LR~kLlrLv~Rlg------~sPe~~~laQvLyrLgLaE~Li~~~~~rL~~-fs~d~a~-----~LaeqLe~ 625 (1266)
..|++||+.||.+|.++...+. ..|....+.+.|...++...++..+...+.. ...+..| .+.+.|..
T Consensus 102 ~~l~~Ei~~lr~~l~~~~~~~~~~~~~~~~p~~~~~~~~L~~~~v~~~la~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 181 (420)
T PRK14721 102 ANIMQEIRAMRQMLEEQLTTMGWSNFSQRDPGGMKVLRTLLSAGFSPLLSRHLLEKLPADRDFEQSLKKTISLLTLNLRT 181 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCcHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Confidence 5899999999999987776532 3466677889999999999999888776533 2222333 23344443
Q ss_pred hCC-CCCCCccEEEEEccCCCCHHHHHHHHhcCc----------cccccCcccceeEEEEEEEEEC--------------
Q 000824 626 AGQ-EPLDFSCTIMVLGKTGVGKSATINSIFDEV----------KFGTDAFQMGTKKVQDVVGTVQ-------------- 680 (1266)
Q Consensus 626 ~~~-e~lk~slrILLVGpTGVGKSTLINSLLGr~----------vftvda~rstTre~qei~geI~-------------- 680 (1266)
... +....+.+|+|||++|+|||||+++|+++. .+..+.++.+..+++..++.+.
T Consensus 182 ~~~~~~~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~ 261 (420)
T PRK14721 182 IGGDEIIEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQ 261 (420)
T ss_pred cCCccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHH
Confidence 222 233456799999999999999999998742 1234556655444443333333
Q ss_pred -------CEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCc
Q 000824 681 -------GIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWF 753 (1266)
Q Consensus 681 -------GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k 753 (1266)
+..+++|||+|+.. .....+.+++.+.....++-+++|++++... ..+..+...|.. ..
T Consensus 262 ~al~~l~~~d~VLIDTaGrsq------rd~~~~~~l~~l~~~~~~~~~~LVl~at~~~------~~~~~~~~~f~~--~~ 327 (420)
T PRK14721 262 LMLHELRGKHMVLIDTVGMSQ------RDQMLAEQIAMLSQCGTQVKHLLLLNATSSG------DTLDEVISAYQG--HG 327 (420)
T ss_pred HHHHHhcCCCEEEecCCCCCc------chHHHHHHHHHHhccCCCceEEEEEcCCCCH------HHHHHHHHHhcC--CC
Confidence 34478999999853 2345666776654444566778887776432 235666666653 45
Q ss_pred cEEEEEeccCCCC
Q 000824 754 NAIVVLTHAASAP 766 (1266)
Q Consensus 754 ~tIVVLTKaDeL~ 766 (1266)
..-+||||.|+..
T Consensus 328 ~~~~I~TKlDEt~ 340 (420)
T PRK14721 328 IHGCIITKVDEAA 340 (420)
T ss_pred CCEEEEEeeeCCC
Confidence 5678999999875
No 31
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.30 E-value=3.4e-11 Score=117.87 Aligned_cols=126 Identities=20% Similarity=0.211 Sum_probs=82.2
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
.++|+++|.+|+||||++|+|++.........+.+|...........+.++.+|||||+.+........+. ...+....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~-~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEK-YSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHH-HHHHHHHH
Confidence 46899999999999999999999866555556666766665666678889999999999653111111111 11111111
Q ss_pred hcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
....+|++++|+++... .......+++.+.. ...++++|+||+|...
T Consensus 81 ~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~-----~~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 81 AIERADVVLLVIDATEG-ITEQDLRIAGLILE-----EGKALVIVVNKWDLVE 127 (174)
T ss_pred HHhhcCeEEEEEeCCCC-cchhHHHHHHHHHh-----cCCCEEEEEeccccCC
Confidence 12368999999876532 33333334443322 2478999999999764
No 32
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.30 E-value=7.5e-11 Score=136.68 Aligned_cols=125 Identities=15% Similarity=0.096 Sum_probs=81.2
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC-EEEEEEeCCCCCCCccchhchHHHHHHHHHhhh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG-IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIK 714 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G-ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk 714 (1266)
.|+|||++|||||||+|+|++... .++.++.+|+........+.+ .+++|+||||+...+. ....+...+.+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~---~~~~Lg~~~l~~i- 235 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGAS---EGAGLGIRFLKHL- 235 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCcccccc---chhhHHHHHHHHH-
Confidence 699999999999999999998764 667788888876666655554 5799999999986431 1111222222233
Q ss_pred cCCCCEEEEEeecCCC-CCCC--CcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 715 KTPPDIVLYLDRLDMQ-NRDF--SDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 715 ~~~pDVVLLVIrld~~-r~d~--eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
...+++|+|++++.. ..+. ....+++.+......-..++.+||+||+|...
T Consensus 236 -~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 236 -ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred -HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence 358899999876521 1111 11234444443211113478999999999753
No 33
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.28 E-value=2e-11 Score=142.65 Aligned_cols=200 Identities=19% Similarity=0.224 Sum_probs=123.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHcchhHHHHhhhcCCCCCc-chhH--HH-HHHHHHH
Q 000824 553 EAEEYDETREKLQMIRVKFLRLAHRL----GQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAF-SFDR--AS-AMAEQLE 624 (1266)
Q Consensus 553 ~s~E~~eLr~ELq~LR~kLlrLv~Rl----g~sPe~~~laQvLyrLgLaE~Li~~~~~rL~~f-s~d~--a~-~LaeqLe 624 (1266)
...+..+|+.||..||.+|..+.... ...|....+.+.|...|+.+.++..+...+... .... +| .+.+.|.
T Consensus 128 ~~~~~~~l~~el~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 207 (424)
T PRK05703 128 VQKELDELRDELKELKNLLEDQLSGLRQVERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRERTAWRYLLELLA 207 (424)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34557899999999999998887664 123445668999999999999998887654221 1112 33 2333333
Q ss_pred Hh----CCCCCCCccEEEEEccCCCCHHHHHHHHhcCc--------c--ccccCcccceeEEEEEEE-------------
Q 000824 625 AA----GQEPLDFSCTIMVLGKTGVGKSATINSIFDEV--------K--FGTDAFQMGTKKVQDVVG------------- 677 (1266)
Q Consensus 625 ~~----~~e~lk~slrILLVGpTGVGKSTLINSLLGr~--------v--ftvda~rstTre~qei~g------------- 677 (1266)
.. ....+..+..|+|+||||||||||+.+|+... + +..+.+++++.++...++
T Consensus 208 ~~l~~~~~~~~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~ 287 (424)
T PRK05703 208 NMIPVRVEDILKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDP 287 (424)
T ss_pred HHhCccccccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCH
Confidence 22 11223335689999999999999999987532 1 234555543222111110
Q ss_pred --------EECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhh-cCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhC
Q 000824 678 --------TVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIK-KTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFG 748 (1266)
Q Consensus 678 --------eI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk-~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG 748 (1266)
...+..++||||||... .+...+.++..++. ...+.-+++|++++... ..++.+.+.|.
T Consensus 288 ~~l~~~l~~~~~~DlVlIDt~G~~~------~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~------~~l~~~~~~f~ 355 (424)
T PRK05703 288 KELAKALEQLRDCDVILIDTAGRSQ------RDKRLIEELKALIEFSGEPIDVYLVLSATTKY------EDLKDIYKHFS 355 (424)
T ss_pred HhHHHHHHHhCCCCEEEEeCCCCCC------CCHHHHHHHHHHHhccCCCCeEEEEEECCCCH------HHHHHHHHHhC
Confidence 12346789999999953 23344555666665 22355667776665432 23566666665
Q ss_pred CCCCccEEEEEeccCCCC
Q 000824 749 PSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 749 ~ei~k~tIVVLTKaDeL~ 766 (1266)
. ....-+||||+|+..
T Consensus 356 ~--~~~~~vI~TKlDet~ 371 (424)
T PRK05703 356 R--LPLDGLIFTKLDETS 371 (424)
T ss_pred C--CCCCEEEEecccccc
Confidence 3 223468999999864
No 34
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.28 E-value=1.5e-10 Score=130.37 Aligned_cols=126 Identities=22% Similarity=0.295 Sum_probs=92.9
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
..+|++.|.+|||||||+++|.+.. ..+..|+.||+.+..-+....+.++.||||||+.|.......+ --.+.|. .+
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~-IE~qAi~-AL 244 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNE-IERQAIL-AL 244 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcH-HHHHHHH-HH
Confidence 4699999999999999999999863 4566799999999999999999999999999999853222221 1112221 12
Q ss_pred hcCCCCEEEEEeecCCCCC-CC-CcHHHHHHHHHHhCCCCCccEEEEEeccCCCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNR-DF-SDMPLLRTITDIFGPSIWFNAIVVLTHAASAPP 767 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~-d~-eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~P 767 (1266)
+. =.++|||+++++.... +. .+..+++.|...|. .++++|+||.|...+
T Consensus 245 ~h-l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~ 295 (346)
T COG1084 245 RH-LAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIADE 295 (346)
T ss_pred HH-hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccch
Confidence 11 1468888877765443 32 34578888988875 689999999997643
No 35
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.28 E-value=4.2e-11 Score=127.47 Aligned_cols=126 Identities=21% Similarity=0.217 Sum_probs=94.9
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc-cccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV-KFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~-vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
...-|+++|++||||||+||+|+++. .+.++..++.|+....+ .+.+ .+.+||.||++-........+.+-+.|..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff--~~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFF--EVDD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEE--EecC-cEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 34689999999999999999999965 57788888888765433 4443 38899999998765555556777788888
Q ss_pred hhhcC-CCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCC
Q 000824 712 FIKKT-PPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPP 767 (1266)
Q Consensus 712 fLk~~-~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~P 767 (1266)
|+... ..-.+++++++. +.....|.++++++... ..+++||+||+|++..
T Consensus 100 YL~~R~~L~~vvlliD~r-~~~~~~D~em~~~l~~~-----~i~~~vv~tK~DKi~~ 150 (200)
T COG0218 100 YLEKRANLKGVVLLIDAR-HPPKDLDREMIEFLLEL-----GIPVIVVLTKADKLKK 150 (200)
T ss_pred HHhhchhheEEEEEEECC-CCCcHHHHHHHHHHHHc-----CCCeEEEEEccccCCh
Confidence 88763 355566665543 23444588888888775 6889999999999864
No 36
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.27 E-value=2.5e-11 Score=149.51 Aligned_cols=199 Identities=20% Similarity=0.244 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----C----CCchhHHHHHHHHHcchhHHHHhhhcCCCCC-cchhHHHH-HHHHHHH
Q 000824 556 EYDETREKLQMIRVKFLRLAHRL----G----QTPHNVVVAQVLYRLGLAEQLRGRNGGRVGA-FSFDRASA-MAEQLEA 625 (1266)
Q Consensus 556 E~~eLr~ELq~LR~kLlrLv~Rl----g----~sPe~~~laQvLyrLgLaE~Li~~~~~rL~~-fs~d~a~~-LaeqLe~ 625 (1266)
..+.|+.+|++||.+|......+ . ..|....+.+.|...++...++..+.+++.. .....++. +.+.|..
T Consensus 91 ~~~~l~~El~~lk~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~~~~~~~~~l~~~L~~ 170 (767)
T PRK14723 91 AIGDLRGELQSMRGMLERQLAGLLWAAGEVAGRDPLRASLFRWLLGAGFSGQLARALLERLPVGYDRPAAMAWIRNELAT 170 (767)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 46889999999999998765543 1 1233345788999999999998888776533 23333332 3333332
Q ss_pred ----hCCC--CCCCccEEEEEccCCCCHHHHHHHHhcCc----------cccccCcccceeEEEEEEEEEC---------
Q 000824 626 ----AGQE--PLDFSCTIMVLGKTGVGKSATINSIFDEV----------KFGTDAFQMGTKKVQDVVGTVQ--------- 680 (1266)
Q Consensus 626 ----~~~e--~lk~slrILLVGpTGVGKSTLINSLLGr~----------vftvda~rstTre~qei~geI~--------- 680 (1266)
.... .+..+..|+|||++|||||||+.+|++.. .+..|+++++..++...++.+.
T Consensus 171 ~l~il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~ 250 (767)
T PRK14723 171 HLPVLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKD 250 (767)
T ss_pred HhhhccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCC
Confidence 1111 12235689999999999999999999742 1234667766544444333333
Q ss_pred ------------CEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhC
Q 000824 681 ------------GIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFG 748 (1266)
Q Consensus 681 ------------GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG 748 (1266)
++.++||||||... .+..++++++.+.....++-+++|++++.+ ...++.+.+.|.
T Consensus 251 ~~~l~~al~~~~~~D~VLIDTAGRs~------~d~~l~eel~~l~~~~~p~e~~LVLsAt~~------~~~l~~i~~~f~ 318 (767)
T PRK14723 251 AADLRFALAALGDKHLVLIDTVGMSQ------RDRNVSEQIAMLCGVGRPVRRLLLLNAASH------GDTLNEVVHAYR 318 (767)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCc------cCHHHHHHHHHHhccCCCCeEEEEECCCCc------HHHHHHHHHHHh
Confidence 34578999999853 234566777666555678888999877643 233566666664
Q ss_pred CCC-CccEEEEEeccCCCC
Q 000824 749 PSI-WFNAIVVLTHAASAP 766 (1266)
Q Consensus 749 ~ei-~k~tIVVLTKaDeL~ 766 (1266)
... ....-+||||.|+..
T Consensus 319 ~~~~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 319 HGAGEDVDGCIITKLDEAT 337 (767)
T ss_pred hcccCCCCEEEEeccCCCC
Confidence 311 134568899999875
No 37
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.27 E-value=3.9e-11 Score=138.27 Aligned_cols=121 Identities=16% Similarity=0.132 Sum_probs=91.8
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhc
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKK 715 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~ 715 (1266)
+|+|+|++|||||||+|.|++.....++.++++|++.......+.+..+.||||||+.... ....+.+......+++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~~- 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD--DGLDKQIREQAEIAIE- 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc--hhHHHHHHHHHHHHHh-
Confidence 4899999999999999999998877777888899988888888999999999999985321 1122334444444443
Q ss_pred CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 716 TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 716 ~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.+|++|||++... .....+..+++.+.+. .+++++|+||+|...
T Consensus 78 -~ad~vl~vvD~~~-~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~ 121 (429)
T TIGR03594 78 -EADVILFVVDGRE-GLTPEDEEIAKWLRKS-----GKPVILVANKIDGKK 121 (429)
T ss_pred -hCCEEEEEEeCCC-CCCHHHHHHHHHHHHh-----CCCEEEEEECccCCc
Confidence 5899999987764 3454566666666552 578999999999764
No 38
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.27 E-value=4e-11 Score=142.03 Aligned_cols=195 Identities=19% Similarity=0.244 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC------CCchhHHHHHHHHHcchhHHHHhhhcCCCCC-cchhHHHH-----HHHHHH
Q 000824 557 YDETREKLQMIRVKFLRLAHRLG------QTPHNVVVAQVLYRLGLAEQLRGRNGGRVGA-FSFDRASA-----MAEQLE 624 (1266)
Q Consensus 557 ~~eLr~ELq~LR~kLlrLv~Rlg------~sPe~~~laQvLyrLgLaE~Li~~~~~rL~~-fs~d~a~~-----LaeqLe 624 (1266)
...|++||+.||.+|...+..+. ..|....+.+.|...++...+...+.+.+.. .....++. +.+.+.
T Consensus 165 ~~~l~~El~~lr~~l~~~~~~l~~~~~~~~~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~~~~~~~~~l~~~l~~~l~ 244 (484)
T PRK06995 165 NDTVMQELRSLRGMLEEQLASLAWGERQRRDPVRAALLKHLLAAGFSAQLVRMLVDNLPEGDDAEAALDWVQSALAKNLP 244 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHh
Confidence 46789999999999986665532 2355567889999999999998888776532 22333332 223333
Q ss_pred HhCC--CCCCCccEEEEEccCCCCHHHHHHHHhcCc--------c--ccccCcccceeEEEEEEEEE-------------
Q 000824 625 AAGQ--EPLDFSCTIMVLGKTGVGKSATINSIFDEV--------K--FGTDAFQMGTKKVQDVVGTV------------- 679 (1266)
Q Consensus 625 ~~~~--e~lk~slrILLVGpTGVGKSTLINSLLGr~--------v--ftvda~rstTre~qei~geI------------- 679 (1266)
.... ..+..+..|+|||+||||||||+.+|++.. + +..+.++.+..+++.+++.+
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~D 324 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAAD 324 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchh
Confidence 2221 123346789999999999999999999732 1 23455655443333322222
Q ss_pred --------CCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcC-CCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCC
Q 000824 680 --------QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKT-PPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPS 750 (1266)
Q Consensus 680 --------~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~-~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~e 750 (1266)
.+..+++|||+|.... +..+...+. .+... .++-.+||++.+... ..+..+.+.|..
T Consensus 325 l~~aL~~L~d~d~VLIDTaGr~~~------d~~~~e~~~-~l~~~~~p~e~~LVLdAt~~~------~~l~~i~~~f~~- 390 (484)
T PRK06995 325 LRLALSELRNKHIVLIDTIGMSQR------DRMVSEQIA-MLHGAGAPVKRLLLLNATSHG------DTLNEVVQAYRG- 390 (484)
T ss_pred HHHHHHhccCCCeEEeCCCCcChh------hHHHHHHHH-HHhccCCCCeeEEEEeCCCcH------HHHHHHHHHhcc-
Confidence 2345789999998532 222333332 23222 244577887765432 335555555544
Q ss_pred CCccEEEEEeccCCCC
Q 000824 751 IWFNAIVVLTHAASAP 766 (1266)
Q Consensus 751 i~k~tIVVLTKaDeL~ 766 (1266)
....-+||||.|...
T Consensus 391 -~~~~g~IlTKlDet~ 405 (484)
T PRK06995 391 -PGLAGCILTKLDEAA 405 (484)
T ss_pred -CCCCEEEEeCCCCcc
Confidence 234567899999764
No 39
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.23 E-value=4.2e-11 Score=118.80 Aligned_cols=125 Identities=19% Similarity=0.167 Sum_probs=75.2
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCE-EEEEEeCCCCCCCccchhchHHHHHHHHHhhh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGI-KVRVIDTPGLLPSWSDQRQNEKILHSVKRFIK 714 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~Gi-pVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk 714 (1266)
+|+|+|++|||||||+|+|.+... .++.+..+|.........+.+. ++.++||||+.+... ....+.....+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~~~- 76 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGAS---EGKGLGHRFLRHI- 76 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCccc---ccCCchHHHHHHH-
Confidence 689999999999999999998654 3444444555444444445665 999999999864311 0111111111112
Q ss_pred cCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 715 KTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 715 ~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
...|++++|++++...-.... ...++.+.........+++++|+||+|..+
T Consensus 77 -~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 77 -ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred -HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 247899999877643101111 223344443322123578999999999764
No 40
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.22 E-value=5e-11 Score=137.41 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=88.6
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
..++|+++|.+|+|||||+|+|++.....++..+++|.+.......+.+..+.++||||+.....-.. ..+.+..++..
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~-~~e~~~~~~~~ 249 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTE-GVEKYSVLRTL 249 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchh-hHHHHHHHHHH
Confidence 35799999999999999999999988777777888888877777777889999999999965321110 11111111111
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
-.....|++|+|++++. +....+..+++.+.+. ..+++||+||+|..
T Consensus 250 ~~~~~ad~~ilV~D~~~-~~~~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 250 KAIERADVVLLVLDATE-GITEQDLRIAGLILEA-----GKALVIVVNKWDLV 296 (429)
T ss_pred HHHHhCCEEEEEEECCC-CccHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence 11235899999988763 3444455555555432 47899999999986
No 41
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.20 E-value=1.2e-10 Score=113.73 Aligned_cols=115 Identities=17% Similarity=0.278 Sum_probs=77.6
Q ss_pred EEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCC
Q 000824 639 VLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPP 718 (1266)
Q Consensus 639 LVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~p 718 (1266)
|+|.+|||||||+|+|++.. +.++.++++|..+......+.+..+.|+||||+.+..... ....+. ..++....+
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~---~~~~~~~~~ 75 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYS-EDEKVA---RDFLLGEKP 75 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCC-hhHHHH---HHHhcCCCC
Confidence 68999999999999999975 4555667777776666667788999999999986532111 111222 223333578
Q ss_pred CEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 719 DIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 719 DVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
|+++||+++... . .....+..+.. ..+++++|+||+|...
T Consensus 76 d~vi~v~d~~~~--~-~~~~~~~~~~~-----~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 76 DLIVNVVDATNL--E-RNLYLTLQLLE-----LGLPVVVALNMIDEAE 115 (158)
T ss_pred cEEEEEeeCCcc--h-hHHHHHHHHHH-----cCCCEEEEEehhhhcc
Confidence 999999776532 1 22233333332 2578999999999754
No 42
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=6.9e-11 Score=135.14 Aligned_cols=128 Identities=25% Similarity=0.384 Sum_probs=92.5
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCccccc------cCcccceeEEEEEEEEE--CC--EEEEEEeCCCCCCCccchhc
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFGT------DAFQMGTKKVQDVVGTV--QG--IKVRVIDTPGLLPSWSDQRQ 701 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~vftv------da~rstTre~qei~geI--~G--ipVtVIDTPGL~DS~gd~~~ 701 (1266)
.+.++++++|..|.|||||||+|++...... ..-...|..+......+ +| .+++|||||||+|. ..
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~----vd 94 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA----VD 94 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccc----cc
Confidence 3568999999999999999999999743321 11111244444444444 33 56899999999775 33
Q ss_pred hHHHHHHHHHhhhc-------------------CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEecc
Q 000824 702 NEKILHSVKRFIKK-------------------TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHA 762 (1266)
Q Consensus 702 neeIlkeIKkfLk~-------------------~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKa 762 (1266)
+...++.|..|+.. .++||+||+++.+.+++.+.|..+|+.|... .|+|.|+.|+
T Consensus 95 ns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~------vNiIPVI~Ka 168 (366)
T KOG2655|consen 95 NSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK------VNLIPVIAKA 168 (366)
T ss_pred ccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc------ccccceeecc
Confidence 44444444444431 3689999999999888999999999998765 6899999999
Q ss_pred CCCCCCC
Q 000824 763 ASAPPDG 769 (1266)
Q Consensus 763 DeL~Pde 769 (1266)
|.+.+++
T Consensus 169 D~lT~~E 175 (366)
T KOG2655|consen 169 DTLTKDE 175 (366)
T ss_pred ccCCHHH
Confidence 9998654
No 43
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.19 E-value=1.8e-10 Score=114.29 Aligned_cols=124 Identities=23% Similarity=0.282 Sum_probs=77.3
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHH-HHHHHHhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKI-LHSVKRFI 713 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeI-lkeIKkfL 713 (1266)
.+|+|+|.+||||||++|+|++... ....+..+|..+......+.+.++.|+||||+.+..... ...+ ...+. .+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~-~~ 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE--RNTIEMQAIT-AL 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccC--CchHHHHHHH-HH
Confidence 3799999999999999999999753 233344556655554555577899999999986431111 1111 11111 11
Q ss_pred hcCCCCEEEEEeecCCCCC-CC-CcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNR-DF-SDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~-d~-eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
. ...|++|||++++.... .. .....++.+...+. ..++++|+||+|...
T Consensus 77 ~-~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~ 127 (168)
T cd01897 77 A-HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLT 127 (168)
T ss_pred H-hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCc
Confidence 1 12578899977764322 11 12234555554432 579999999999864
No 44
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.19 E-value=2.1e-10 Score=132.78 Aligned_cols=124 Identities=20% Similarity=0.227 Sum_probs=89.9
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHH--HHHHHH
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEK--ILHSVK 710 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~nee--IlkeIK 710 (1266)
..++|+|+|++|+|||||+|+|++...+.++..+++|++.........+..+.++||||+.....-....+. ..+.+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~- 250 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL- 250 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH-
Confidence 468999999999999999999999988878888889988877777788999999999999653211111111 11111
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+++ ...|++|+|++++. .....+..++..+.+. .++++||+||||..
T Consensus 251 ~~~--~~ad~~ilViD~~~-~~~~~~~~i~~~~~~~-----~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 251 KAI--ERADVVLLVIDATE-GITEQDLRIAGLALEA-----GRALVIVVNKWDLV 297 (435)
T ss_pred HHH--HHCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECccCC
Confidence 222 35899999988764 3444555555555432 47899999999976
No 45
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.19 E-value=1.3e-10 Score=121.51 Aligned_cols=118 Identities=20% Similarity=0.159 Sum_probs=75.7
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccC----cccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDA----FQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda----~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
++|+|+|++|+|||||+|+|+|........ ...+|.....+. .-....+.++||||+.+.. ...+.+++.+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~l~l~DtpG~~~~~---~~~~~~l~~~- 76 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYP-HPKFPNVTLWDLPGIGSTA---FPPDDYLEEM- 76 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeee-cCCCCCceEEeCCCCCccc---CCHHHHHHHh-
Confidence 689999999999999999999954322111 111222222111 1123478999999997642 2223333322
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCCC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPD 768 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~Pd 768 (1266)
.....|++|+|.+ .++...+..+++.+.+. .+++++|+||+|...|.
T Consensus 77 ---~~~~~d~~l~v~~---~~~~~~d~~~~~~l~~~-----~~~~ilV~nK~D~~~~~ 123 (197)
T cd04104 77 ---KFSEYDFFIIISS---TRFSSNDVKLAKAIQCM-----GKKFYFVRTKVDRDLSN 123 (197)
T ss_pred ---CccCcCEEEEEeC---CCCCHHHHHHHHHHHHh-----CCCEEEEEecccchhhh
Confidence 2345788888842 34666777788877764 36789999999997654
No 46
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.19 E-value=1.9e-10 Score=133.14 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=89.7
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIK 714 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk 714 (1266)
++|+|+|++|||||||+|.|++...+.++.+.++|++.......+.+..+.||||||+.+.. ......+......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~~~~~~~~~~~~- 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDD--DGFEKQIREQAELAI- 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcc--hhHHHHHHHHHHHHH-
Confidence 47999999999999999999998776777788888888777788899999999999997521 111222323333333
Q ss_pred cCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 715 KTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 715 ~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
..+|++|||+++.. .....+..+.+.+.+. ..++++|+||+|..
T Consensus 79 -~~ad~il~vvd~~~-~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~ 122 (435)
T PRK00093 79 -EEADVILFVVDGRA-GLTPADEEIAKILRKS-----NKPVILVVNKVDGP 122 (435)
T ss_pred -HhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECccCc
Confidence 35899999988764 3444555666666553 57899999999953
No 47
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.18 E-value=8.7e-10 Score=126.27 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=78.7
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE-CCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV-QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI-~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
.++|+|+|.||||||||+|+|++... .+.....+|.+.......+ .+.++.|+||||+.... ...+...++..
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~-~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l-----~~~lie~f~~t 262 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADV-YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL-----PHELVAAFRAT 262 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCce-eeccCCccccCCEEEEEEeCCCceEEEEecCcccccC-----CHHHHHHHHHH
Confidence 47999999999999999999999874 3444455666555555556 57899999999994311 11122222221
Q ss_pred hh-cCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IK-KTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk-~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+. ...+|++|+|++++... ...+...+..+.+.++. ...++++|+||+|...
T Consensus 263 le~~~~ADlil~VvD~s~~~-~~~~~~~~~~~L~~l~~-~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 263 LEEVREADLLLHVVDASDPD-REEQIEAVEKVLEELGA-EDIPQLLVYNKIDLLD 315 (351)
T ss_pred HHHHHhCCEEEEEEECCCCc-hHHHHHHHHHHHHHhcc-CCCCEEEEEEeecCCC
Confidence 11 23589999998876432 11222222222222332 2478999999999753
No 48
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.18 E-value=7.7e-11 Score=136.58 Aligned_cols=196 Identities=16% Similarity=0.264 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHcchhHHHHhhhcCCCCCc-------chhHHH-H----HHHHH
Q 000824 556 EYDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAF-------SFDRAS-A----MAEQL 623 (1266)
Q Consensus 556 E~~eLr~ELq~LR~kLlrLv~Rlg~sPe~~~laQvLyrLgLaE~Li~~~~~rL~~f-------s~d~a~-~----LaeqL 623 (1266)
..++|+.||+.||.++....... ..+....+...|...++...++..+..++... ..+..+ . +.+.+
T Consensus 84 ~~~~l~~el~~lk~~l~~~~~~~-~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~l~~~l~~~i 162 (388)
T PRK12723 84 SIEDVLKEVKSLKNELAHKKEEI-NHPTILKIEDILRENDFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVIIYIAKTI 162 (388)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHh
Confidence 47889999999999987655433 23444557788888999888888776654211 122222 1 22233
Q ss_pred HHhCCC-CCCCccEEEEEccCCCCHHHHHHHHhcC----------c--cccccCcccceeEEEEEEEEECC---------
Q 000824 624 EAAGQE-PLDFSCTIMVLGKTGVGKSATINSIFDE----------V--KFGTDAFQMGTKKVQDVVGTVQG--------- 681 (1266)
Q Consensus 624 e~~~~e-~lk~slrILLVGpTGVGKSTLINSLLGr----------~--vftvda~rstTre~qei~geI~G--------- 681 (1266)
...... ....+..|+++|+||||||||+.+|+.. . ++..|+|+.++..++..++.+.|
T Consensus 163 ~~~~~~~~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~ 242 (388)
T PRK12723 163 KCSGSIIDNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESF 242 (388)
T ss_pred hccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcH
Confidence 211111 1123568999999999999999999853 1 24567788776655555555443
Q ss_pred ------------EEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCC-CCEEEEEeecCCCCCCCCcHHHHHHHHHHhC
Q 000824 682 ------------IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTP-PDIVLYLDRLDMQNRDFSDMPLLRTITDIFG 748 (1266)
Q Consensus 682 ------------ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~-pDVVLLVIrld~~r~d~eD~elLK~I~eiFG 748 (1266)
..++||||||.... +...+.++++++.... ++-+++|++++... ..+..+...|.
T Consensus 243 ~~l~~~L~~~~~~DlVLIDTaGr~~~------~~~~l~el~~~l~~~~~~~e~~LVlsat~~~------~~~~~~~~~~~ 310 (388)
T PRK12723 243 KDLKEEITQSKDFDLVLVDTIGKSPK------DFMKLAEMKELLNACGRDAEFHLAVSSTTKT------SDVKEIFHQFS 310 (388)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCCcc------CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH------HHHHHHHHHhc
Confidence 44799999998532 3334667777776554 34688888877542 12334444443
Q ss_pred CCCCccEEEEEeccCCCC
Q 000824 749 PSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 749 ~ei~k~tIVVLTKaDeL~ 766 (1266)
. ....-+||||.|+..
T Consensus 311 ~--~~~~~~I~TKlDet~ 326 (388)
T PRK12723 311 P--FSYKTVIFTKLDETT 326 (388)
T ss_pred C--CCCCEEEEEeccCCC
Confidence 2 245678999999865
No 49
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.17 E-value=7.2e-11 Score=117.22 Aligned_cols=122 Identities=20% Similarity=0.192 Sum_probs=75.8
Q ss_pred EEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEEC-CEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCC
Q 000824 639 VLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQ-GIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTP 717 (1266)
Q Consensus 639 LVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~-GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~ 717 (1266)
|+|++|||||||+|+|++... .+..+..+|..+......+. +.++.|+||||+.+... ..+.+...+..++ ..
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~--~~ 74 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGAS---EGRGLGNQFLAHI--RR 74 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhh---cCCCccHHHHHHH--hc
Confidence 589999999999999999865 44556667766655555677 89999999999864211 1111222222222 24
Q ss_pred CCEEEEEeecCCCC-----CCCCcH-HHHHHHHHHhCC-----CCCccEEEEEeccCCCC
Q 000824 718 PDIVLYLDRLDMQN-----RDFSDM-PLLRTITDIFGP-----SIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 718 pDVVLLVIrld~~r-----~d~eD~-elLK~I~eiFG~-----ei~k~tIVVLTKaDeL~ 766 (1266)
+|++++|++++... ....+. .....+...... ...+++++|+||+|...
T Consensus 75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 88999998775431 111111 122233222111 13589999999999764
No 50
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.17 E-value=4.6e-10 Score=114.65 Aligned_cols=126 Identities=21% Similarity=0.221 Sum_probs=79.5
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCc-cccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEV-KFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~-vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
+..++|+|+|.+|+|||||+|+|++.. ...++...++|+.+.... + +.++.|+||||+..........+.+...+.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 345799999999999999999999974 444444555666544332 2 578999999998653211112233333344
Q ss_pred HhhhcC-CCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 711 RFIKKT-PPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 711 kfLk~~-~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.++... ..+++++|++.+. .....+..+++.+.. ...++++++||+|.+.
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~-~~~~~~~~i~~~l~~-----~~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRH-PLKELDLQMIEWLKE-----YGIPVLIVLTKADKLK 149 (196)
T ss_pred HHHHhCccceEEEEEEecCC-CCCHHHHHHHHHHHH-----cCCcEEEEEECcccCC
Confidence 455432 4567777765543 233333444555432 2467899999999864
No 51
>PRK15494 era GTPase Era; Provisional
Probab=99.16 E-value=2.9e-10 Score=129.29 Aligned_cols=122 Identities=17% Similarity=0.217 Sum_probs=83.3
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
.++|+|+|.+|||||||+|+|++.....++....+|+........+.+.++.|+||||+.+.. ......+.+....++
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~--~~l~~~~~r~~~~~l 129 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK--GSLEKAMVRCAWSSL 129 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCc--ccHHHHHHHHHHHHh
Confidence 469999999999999999999998776665555666665555556788999999999996532 112233333333333
Q ss_pred hcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
..+|++|||++... .+...+..+++.+... ..+.++|+||+|..
T Consensus 130 --~~aDvil~VvD~~~-s~~~~~~~il~~l~~~-----~~p~IlViNKiDl~ 173 (339)
T PRK15494 130 --HSADLVLLIIDSLK-SFDDITHNILDKLRSL-----NIVPIFLLNKIDIE 173 (339)
T ss_pred --hhCCEEEEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEEhhcCc
Confidence 35899999977543 3333344455555432 35678999999963
No 52
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.16 E-value=2.2e-10 Score=135.14 Aligned_cols=127 Identities=17% Similarity=0.162 Sum_probs=89.9
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
...+|+|+|++|||||||+|+|++.....++.++++|++.......+.+.++.|+||||+..... .....+.+..++..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~-~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVK-QASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCcccccc-ccchHHHHHHHHHH
Confidence 35799999999999999999999987766777788888777667778899999999999864311 11112333333322
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.....+|++++|++++.. ....+..++..+.. ..+++|||+||+|+..
T Consensus 289 ~~i~~ad~vilV~Da~~~-~s~~~~~~~~~~~~-----~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEP-ISEQDQRVLSMVIE-----AGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHhcCCEEEEEEeCCCC-CCHHHHHHHHHHHH-----cCCCEEEEEECcccCC
Confidence 222468999999887643 44445555554433 2578999999999763
No 53
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.14 E-value=3.9e-10 Score=106.88 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=76.2
Q ss_pred EEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEEC-CEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCC
Q 000824 639 VLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQ-GIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTP 717 (1266)
Q Consensus 639 LVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~-GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~ 717 (1266)
|+|++|+||||++|+|++.........+++|........... +..+.++||||+.+.. .........+..++ ..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~---~~~~~~~~~~~~~~--~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAG---GLGREREELARRVL--ER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccc---cchhhHHHHHHHHH--Hh
Confidence 589999999999999999876656666666666555554444 7789999999997642 11111122233333 25
Q ss_pred CCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCC
Q 000824 718 PDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPP 767 (1266)
Q Consensus 718 pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~P 767 (1266)
+|+++||++....... .....+..+. ....++++|+||+|...+
T Consensus 76 ~d~il~v~~~~~~~~~-~~~~~~~~~~-----~~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 76 ADLILFVVDADLRADE-EEEKLLELLR-----ERGKPVLLVLNKIDLLPE 119 (163)
T ss_pred CCEEEEEEeCCCCCCH-HHHHHHHHHH-----hcCCeEEEEEEccccCCh
Confidence 8999999777643211 1111122221 135789999999998753
No 54
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.14 E-value=6e-10 Score=108.16 Aligned_cols=122 Identities=22% Similarity=0.224 Sum_probs=76.1
Q ss_pred EEEEccCCCCHHHHHHHHhcCc-cccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhc
Q 000824 637 IMVLGKTGVGKSATINSIFDEV-KFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKK 715 (1266)
Q Consensus 637 ILLVGpTGVGKSTLINSLLGr~-vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~ 715 (1266)
|+|+|++|+|||||+|+|++.. .........+|..+..+ .+. ..++++||||+..........+.+...+..|+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~--~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--NVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE--Ecc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999532 22233333444443322 223 3899999999976533222334444445555543
Q ss_pred C-CCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCC
Q 000824 716 T-PPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPP 767 (1266)
Q Consensus 716 ~-~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~P 767 (1266)
. ..+++++|++.+.. ....+..+++.+... ..++++|+||+|...+
T Consensus 79 ~~~~~~~~~v~d~~~~-~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~~ 125 (170)
T cd01876 79 RENLKGVVLLIDSRHG-PTEIDLEMLDWLEEL-----GIPFLVVLTKADKLKK 125 (170)
T ss_pred ChhhhEEEEEEEcCcC-CCHhHHHHHHHHHHc-----CCCEEEEEEchhcCCh
Confidence 3 46778888666532 223344556665442 3689999999998643
No 55
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.14 E-value=6.9e-10 Score=131.07 Aligned_cols=122 Identities=17% Similarity=0.214 Sum_probs=89.6
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
..+|+|||++|||||||+|.|++...+.+...+++|++.......+.+.++.|+||||+.... ......+......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHHHHHHHH
Confidence 468999999999999999999998766677777888887777778899999999999985321 111223333333344
Q ss_pred hcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
. .+|++|||++++.. ....+..+++.+.. ..+++++|.||+|..
T Consensus 116 ~--~aD~il~VvD~~~~-~s~~~~~i~~~l~~-----~~~piilV~NK~Dl~ 159 (472)
T PRK03003 116 R--TADAVLFVVDATVG-ATATDEAVARVLRR-----SGKPVILAANKVDDE 159 (472)
T ss_pred H--hCCEEEEEEECCCC-CCHHHHHHHHHHHH-----cCCCEEEEEECccCC
Confidence 3 58999999888643 34345555655543 258999999999964
No 56
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.13 E-value=8.5e-11 Score=135.69 Aligned_cols=196 Identities=17% Similarity=0.156 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHcchhHHHHhhhcCCCC----C---cchhHHH-HHHHHHHHh
Q 000824 555 EEYDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVG----A---FSFDRAS-AMAEQLEAA 626 (1266)
Q Consensus 555 ~E~~eLr~ELq~LR~kLlrLv~Rlg~sPe~~~laQvLyrLgLaE~Li~~~~~rL~----~---fs~d~a~-~LaeqLe~~ 626 (1266)
.++..++.+|..|..+|..-+ +........++..|.+.|+.+.++..+..++. . .+.+.++ .+.+.|...
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~L~~~ 194 (407)
T PRK12726 117 EELSAMRLELAALNRELAVKM--REEREQNSDFVKFLKGRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGK 194 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hhhhcccHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCc
Confidence 557888888988888886222 43222234789999999999988877654431 1 1223332 223333221
Q ss_pred ----CCCCCCCccEEEEEccCCCCHHHHHHHHhcC------c--cccccCcccceeEEEEEEEEE---------------
Q 000824 627 ----GQEPLDFSCTIMVLGKTGVGKSATINSIFDE------V--KFGTDAFQMGTKKVQDVVGTV--------------- 679 (1266)
Q Consensus 627 ----~~e~lk~slrILLVGpTGVGKSTLINSLLGr------~--vftvda~rstTre~qei~geI--------------- 679 (1266)
.......+..|+|+|++|+|||||+.+|+.. . .+..|++++++.++...++..
T Consensus 195 l~~~~~~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~ 274 (407)
T PRK12726 195 LAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELE 274 (407)
T ss_pred EeeCCCceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHH
Confidence 1112334678999999999999999999853 1 244577777553332222111
Q ss_pred ---------CCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCC
Q 000824 680 ---------QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPS 750 (1266)
Q Consensus 680 ---------~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~e 750 (1266)
.+..++||||||... .+...+.+++.++....+|.+++|++++.. ...+. .+...|..
T Consensus 275 ~al~~l~~~~~~D~VLIDTAGr~~------~d~~~l~EL~~l~~~~~p~~~~LVLsag~~-----~~d~~-~i~~~f~~- 341 (407)
T PRK12726 275 EAVQYMTYVNCVDHILIDTVGRNY------LAEESVSEISAYTDVVHPDLTCFTFSSGMK-----SADVM-TILPKLAE- 341 (407)
T ss_pred HHHHHHHhcCCCCEEEEECCCCCc------cCHHHHHHHHHHhhccCCceEEEECCCccc-----HHHHH-HHHHhcCc-
Confidence 235789999999853 346777888888777788888888655322 22223 34444542
Q ss_pred CCccEEEEEeccCCCC
Q 000824 751 IWFNAIVVLTHAASAP 766 (1266)
Q Consensus 751 i~k~tIVVLTKaDeL~ 766 (1266)
....-+||||.|+..
T Consensus 342 -l~i~glI~TKLDET~ 356 (407)
T PRK12726 342 -IPIDGFIITKMDETT 356 (407)
T ss_pred -CCCCEEEEEcccCCC
Confidence 455678899999865
No 57
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.13 E-value=9.4e-10 Score=107.83 Aligned_cols=114 Identities=20% Similarity=0.162 Sum_probs=72.1
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCcc--ccccCcccceeEEEEEEEEEC-CEEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVK--FGTDAFQMGTKKVQDVVGTVQ-GIKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~v--ftvda~rstTre~qei~geI~-GipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
++|+|+|++||||||++|+|++... +.....+.+|.........+. +.++.++||||.. .....+..
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~----------~~~~~~~~ 70 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE----------KFIKNMLA 70 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH----------HHHHHHHh
Confidence 3799999999999999999998532 221122344555444444555 7899999999972 11222222
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
++ ..+|+++||++++.. +.......+..+. ..+ .+++++|+||+|..
T Consensus 71 ~~--~~ad~ii~V~d~~~~-~~~~~~~~~~~~~-~~~---~~~~ilv~NK~Dl~ 117 (164)
T cd04171 71 GA--GGIDLVLLVVAADEG-IMPQTREHLEILE-LLG---IKRGLVVLTKADLV 117 (164)
T ss_pred hh--hcCCEEEEEEECCCC-ccHhHHHHHHHHH-HhC---CCcEEEEEECcccc
Confidence 22 358999999887642 2222333333332 222 24899999999975
No 58
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.10 E-value=2.8e-09 Score=124.83 Aligned_cols=271 Identities=18% Similarity=0.233 Sum_probs=150.8
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
...+++|+|-++||||||+|.+.... ..+..|..||+.....+..+.-..+.||||||+.|....+...-+ +..|..
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IE-mqsITA- 243 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIE-MQIITA- 243 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHH-HHHHHH-
Confidence 35699999999999999999988653 345677788877665555555567899999999885322222222 222222
Q ss_pred hhcCCCCEEEEEeecCCCC-CCC-CcHHHHHHHHHHhCCCCCccEEEEEeccCCCCCCCCCCCCcchhhhhhccCHHHHH
Q 000824 713 IKKTPPDIVLYLDRLDMQN-RDF-SDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQQ 790 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r-~d~-eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~Pde~ng~~~syEefL~qRS~~LQq 790 (1266)
+.+- ..+|||+.+++... .+. .+..++..|..+|- .+++|+|+||+|.+.|+...+ ....+-+
T Consensus 244 LAHL-raaVLYfmDLSe~CGySva~QvkLfhsIKpLFa---NK~~IlvlNK~D~m~~edL~~-----------~~~~ll~ 308 (620)
T KOG1490|consen 244 LAHL-RSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA---NKVTILVLNKIDAMRPEDLDQ-----------KNQELLQ 308 (620)
T ss_pred HHHh-hhhheeeeechhhhCCCHHHHHHHHHHhHHHhc---CCceEEEeecccccCccccCH-----------HHHHHHH
Confidence 2111 24688998886543 332 45678999999985 588999999999998865321 1111222
Q ss_pred HHHHHhccCCcccceeeccccccccCCCCCCcccCCCCCchHHHHHHHHHHHHHHHHh--hhhcccCCCCCCCCcccCCC
Q 000824 791 AIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEAN--TLLKLQDTPPGKPFSTRSRA 868 (1266)
Q Consensus 791 lIrqc~gry~l~NPV~LVEN~p~C~tNe~gekvLPngqdWi~qLllLc~v~kIL~eA~--sfLkf~d~~~gk~f~~r~r~ 868 (1266)
.|..-+. +.+++ ..|..-.. -..+.+. -...||.--.-.++.++-. ..|+-.--...++.+...|+
T Consensus 309 ~~~~~~~-------v~v~~--tS~~~eeg-Vm~Vrt~--ACe~LLa~RVE~Klks~~~~n~vlnr~hvA~p~~rd~~~r~ 376 (620)
T KOG1490|consen 309 TIIDDGN-------VKVVQ--TSCVQEEG-VMDVRTT--ACEALLAARVEQKLKSESRVNNVLNRIHLAEPAARDEVARP 376 (620)
T ss_pred HHHhccC-------ceEEE--ecccchhc-eeeHHHH--HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcccccccC
Confidence 2222221 22222 12333221 1111000 0112221111122222111 22221111345667788899
Q ss_pred CChHHHHHHhhhcCCCCCCccccCCCCCCccccc-CCCCCCCcccccCCCCCcc----------cccHHHHHHHhHHHH
Q 000824 869 PPLPFLLSSLLQSRPQVKLPEEQFGDEDSLDDDL-DDSSESEDESEFDELPPFK----------RLTKAQVAKLTKAQK 936 (1266)
Q Consensus 869 pPLP~llsslLq~r~~~k~~~~~~g~~~d~d~d~-~~~~d~~eedeydqlppf~----------~l~ksq~~kl~k~q~ 936 (1266)
|++|--+.+.-+.+..+-+-.+++|+ ...++ +.-.+.++|..||-.|-++ |..-.-++.|..|..
T Consensus 377 p~ip~~~~~~~~rk~~~die~e~g~~---y~~~lk~~Y~l~~~e~k~di~pEi~dg~Nvadf~Dp~i~~kl~~l~~Eee 452 (620)
T KOG1490|consen 377 PCIPDSVKTRNRRKLARDIEAENGGA---YNVELRDKYILQDPSWKYDIMPEILDGKNVADFVDPEIEAKLLALDEEEE 452 (620)
T ss_pred CCcchHHHHhhhhhhHHHHHHHhCcc---hhHHhhhccccCChhhhhcccHHHhcCcchhhhcCHHHHHHHHHHHHhhh
Confidence 99999999885444443333333333 11122 2234567788899999864 555556666666544
No 59
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.08 E-value=1.1e-09 Score=113.51 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=73.5
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC-EEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG-IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G-ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
++|+|+|++|||||||+|.|++......+. ..+|.........+.+ .++.|+||||+.+... ..+...+...+
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----~~~~~~~~~~~ 115 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQ-LFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP-----HQLVEAFRSTL 115 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCc-cceeccceeEEEEecCCceEEEeCCCccccCCC-----HHHHHHHHHHH
Confidence 699999999999999999999976433322 2333333333333444 3899999999964311 11111111111
Q ss_pred -hcCCCCEEEEEeecCCCCCCCCcHH-HHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 714 -KKTPPDIVLYLDRLDMQNRDFSDMP-LLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 714 -k~~~pDVVLLVIrld~~r~d~eD~e-lLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
....+|++++|++++.... ..+.. ..+.+.. ++. ...++++|+||+|..+
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~-~~~~~~~~~~l~~-~~~-~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDY-EEQIETVEKVLKE-LGA-EDIPMILVLNKIDLLD 167 (204)
T ss_pred HHHhcCCeEEEEEECCCCCh-hhHHHHHHHHHHH-cCc-CCCCEEEEEEccccCC
Confidence 1235899999987764322 12222 2233322 322 2478999999999864
No 60
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.08 E-value=7.7e-10 Score=136.70 Aligned_cols=126 Identities=16% Similarity=0.190 Sum_probs=89.9
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
.++|+|+|++|||||||+|+|++.....++.++++|++.......+.+.++.|+||||+.... ......+.+..++...
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~-~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQ-HKLTGAEYYSSLRTQA 528 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCc-ccchhHHHHHHHHHHH
Confidence 479999999999999999999998776667788888887777777899999999999986432 1111123333333222
Q ss_pred hcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
....+|++++|++++. .....+..++..+.. ..+++|||+||||...
T Consensus 529 ~i~~advvilViDat~-~~s~~~~~i~~~~~~-----~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 529 AIERSELALFLFDASQ-PISEQDLKVMSMAVD-----AGRALVLVFNKWDLMD 575 (712)
T ss_pred HhhcCCEEEEEEECCC-CCCHHHHHHHHHHHH-----cCCCEEEEEEchhcCC
Confidence 2346899999988764 344445555554433 2578999999999763
No 61
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.08 E-value=1.3e-09 Score=134.84 Aligned_cols=122 Identities=14% Similarity=0.184 Sum_probs=91.6
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
-.+|+|+|++|||||||+|+|++.....++..+++|++.......+.+.++.|+||||+.... ......+......++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV--EGIDSAIASQAQIAV 352 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC--ccHHHHHHHHHHHHH
Confidence 358999999999999999999998776777788889888888888899999999999986421 112233444444444
Q ss_pred hcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
. .+|++|||++++. .+...+..+++.+.. ..+++|+|+||+|..
T Consensus 353 ~--~aD~iL~VvDa~~-~~~~~d~~i~~~Lr~-----~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 353 S--LADAVVFVVDGQV-GLTSTDERIVRMLRR-----AGKPVVLAVNKIDDQ 396 (712)
T ss_pred H--hCCEEEEEEECCC-CCCHHHHHHHHHHHh-----cCCCEEEEEECcccc
Confidence 3 5899999988753 344455555565543 368999999999964
No 62
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.06 E-value=1.2e-09 Score=124.41 Aligned_cols=124 Identities=18% Similarity=0.214 Sum_probs=82.1
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE-CCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV-QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI-~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
..|.|||.+|||||||+|+|.+.. ..+..|+.+|.........+ .+.+++|+||||+.+.+. ....+-....+++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~---~~~gLg~~flrhi 234 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGAS---EGAGLGHRFLKHI 234 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCC---ccccHHHHHHHHh
Confidence 479999999999999999999864 34667788888776666666 567899999999986431 1122322322333
Q ss_pred hcCCCCEEEEEeecCCCCCCCCcHH-HHHHHHHHhCCC-CCccEEEEEeccCCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSDMP-LLRTITDIFGPS-IWFNAIVVLTHAASAP 766 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD~e-lLK~I~eiFG~e-i~k~tIVVLTKaDeL~ 766 (1266)
.+.++++||++++... ..++.. ++..|.. +... ..++.+||+||+|...
T Consensus 235 --e~a~vlI~ViD~s~~~-s~e~~~~~~~EL~~-~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 235 --ERTRLLLHLVDIEAVD-PVEDYKTIRNELEK-YSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred --hhcCEEEEEEcCCCCC-CHHHHHHHHHHHHH-hhhhcccCCeEEEEECcccCC
Confidence 2578999998876422 122222 2233332 2221 3578999999999753
No 63
>PRK04213 GTP-binding protein; Provisional
Probab=99.02 E-value=3.3e-09 Score=109.63 Aligned_cols=123 Identities=15% Similarity=0.135 Sum_probs=74.6
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccch-hchHHHHHHHHH
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQ-RQNEKILHSVKR 711 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~-~~neeIlkeIKk 711 (1266)
...+|+|+|++||||||++|+|++.. +.+...+++|...... .+. ++.++||||+....+-. ...+.+...+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 35799999999999999999999875 4454455566554332 222 68999999975432111 112333333334
Q ss_pred hhh--cCCCCEEEEEeecCCCC-----CC-----CCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 712 FIK--KTPPDIVLYLDRLDMQN-----RD-----FSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 712 fLk--~~~pDVVLLVIrld~~r-----~d-----~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
++. ...++++++|++.+... +. ..+..+++.+.. ...++++|+||+|..
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKI 143 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECcccc
Confidence 443 23567888887664311 00 012233333332 247899999999974
No 64
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.01 E-value=3.6e-09 Score=106.11 Aligned_cols=113 Identities=16% Similarity=0.032 Sum_probs=73.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcCcccccc---------------CcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTD---------------AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQR 700 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvd---------------a~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~ 700 (1266)
+|+|+|.+|+|||||+|+|++....... ..+..|.........+.+..+.||||||..+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 5899999999999999999986443211 11223334334445566889999999998421
Q ss_pred chHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 701 QNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 701 ~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
......++. .+|++++|++.... ........+..+.. ...++++|+||+|...
T Consensus 76 -----~~~~~~~~~--~~d~~i~v~d~~~~-~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 76 -----SSEVIRGLS--VSDGAILVVDANEG-VQPQTREHLRIARE-----GGLPIIVAINKIDRVG 128 (189)
T ss_pred -----HHHHHHHHH--hcCEEEEEEECCCC-CcHHHHHHHHHHHH-----CCCCeEEEEECCCCcc
Confidence 112222332 58899999876532 22233344444432 3589999999999875
No 65
>PRK11058 GTPase HflX; Provisional
Probab=99.01 E-value=2.1e-09 Score=126.03 Aligned_cols=123 Identities=14% Similarity=0.157 Sum_probs=77.7
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCE-EEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGI-KVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~Gi-pVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
..|+|+|.|||||||++|+|++...+ +.....+|.+.......+.+. ++.++||||+.... ....+..+...+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l-----p~~lve~f~~tl 271 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL-----PHDLVAAFKATL 271 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccC-----CHHHHHHHHHHH
Confidence 48999999999999999999998766 334445666555545555554 89999999994311 112222222222
Q ss_pred h-cCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 714 K-KTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 714 k-~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
. ...+|++|+|++++... ...+...+..+...++. ...++++|+||+|..
T Consensus 272 ~~~~~ADlIL~VvDaS~~~-~~e~l~~v~~iL~el~~-~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 272 QETRQATLLLHVVDAADVR-VQENIEAVNTVLEEIDA-HEIPTLLVMNKIDML 322 (426)
T ss_pred HHhhcCCEEEEEEeCCCcc-HHHHHHHHHHHHHHhcc-CCCCEEEEEEcccCC
Confidence 2 24689999998876432 11222222232232332 247899999999975
No 66
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.00 E-value=4.3e-09 Score=104.07 Aligned_cols=111 Identities=16% Similarity=0.113 Sum_probs=70.6
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEEC---CEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQ---GIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~---GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
+|+|+|.+|+||||++|+|++...... ..+.+|.........+. +.++.++||||.... ..+. ..+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~---~~~ 70 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-------TNMR---ARG 70 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccc-cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-------HHHH---HHH
Confidence 699999999999999999998643322 23344554433344443 789999999997321 1111 112
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+ ...|++++|++++.. ........+..+.. ...++++|+||+|..
T Consensus 71 ~--~~~d~il~v~d~~~~-~~~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 71 A--SLTDIAILVVAADDG-VMPQTIEAIKLAKA-----ANVPFIVALNKIDKP 115 (168)
T ss_pred H--hhcCEEEEEEECCCC-ccHHHHHHHHHHHH-----cCCCEEEEEEceecc
Confidence 2 358899999887642 12222334444432 247899999999965
No 67
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.99 E-value=1.3e-10 Score=123.16 Aligned_cols=119 Identities=24% Similarity=0.418 Sum_probs=82.2
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCc--------cccccCcccceeEEEEEEEEECC------------------------
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEV--------KFGTDAFQMGTKKVQDVVGTVQG------------------------ 681 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~--------vftvda~rstTre~qei~geI~G------------------------ 681 (1266)
+..|+|||+||||||||+.+|+.+. .+..|++|.++.++++.++++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3579999999999999999999742 24567888877665544433222
Q ss_pred ---EEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEE
Q 000824 682 ---IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVV 758 (1266)
Q Consensus 682 ---ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVV 758 (1266)
..++||||||... .+...+.++++++....++.+++|++++.. ..+...+....+.++ ..-+|
T Consensus 81 ~~~~D~vlIDT~Gr~~------~d~~~~~el~~~~~~~~~~~~~LVlsa~~~---~~~~~~~~~~~~~~~-----~~~lI 146 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP------RDEELLEELKKLLEALNPDEVHLVLSATMG---QEDLEQALAFYEAFG-----IDGLI 146 (196)
T ss_dssp HTTSSEEEEEE-SSSS------THHHHHHHHHHHHHHHSSSEEEEEEEGGGG---GHHHHHHHHHHHHSS-----TCEEE
T ss_pred hcCCCEEEEecCCcch------hhHHHHHHHHHHhhhcCCccceEEEecccC---hHHHHHHHHHhhccc-----CceEE
Confidence 4479999999953 345666777777776678999999888754 234444444445443 34577
Q ss_pred EeccCCCC
Q 000824 759 LTHAASAP 766 (1266)
Q Consensus 759 LTKaDeL~ 766 (1266)
|||.|+..
T Consensus 147 lTKlDet~ 154 (196)
T PF00448_consen 147 LTKLDETA 154 (196)
T ss_dssp EESTTSSS
T ss_pred EEeecCCC
Confidence 99999864
No 68
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.99 E-value=3.1e-09 Score=124.67 Aligned_cols=124 Identities=18% Similarity=0.172 Sum_probs=81.2
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEEC-CEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQ-GIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~-GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
..|+|||.+|||||||||+|++... .+..++.+|.........+. +..++|+||||+...+. ....+.....+++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~---~~~gLg~~fLrhi 234 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGAS---EGVGLGHQFLRHI 234 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCccccc---ccchHHHHHHHHH
Confidence 3799999999999999999998753 34567778877665555555 78999999999976321 1122222222222
Q ss_pred hcCCCCEEEEEeecCCC-CCCC-Cc-HHHHHHHHHHhCCCCCccEEEEEeccCC
Q 000824 714 KKTPPDIVLYLDRLDMQ-NRDF-SD-MPLLRTITDIFGPSIWFNAIVVLTHAAS 764 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~-r~d~-eD-~elLK~I~eiFG~ei~k~tIVVLTKaDe 764 (1266)
.+.+++++|++++.. ..+. .+ ..+++.|......-..++.+||+||+|.
T Consensus 235 --er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 235 --ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred --hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 357999999887643 1222 12 2233444443222246899999999995
No 69
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.98 E-value=2.8e-09 Score=121.22 Aligned_cols=126 Identities=18% Similarity=0.162 Sum_probs=79.5
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC-EEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG-IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G-ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
..|+|||.+|||||||+|+|.+... .+..++.+|.........+.+ .+++|+||||+.+.... ...+.....+++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~---~~gLg~~flrhi 233 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASE---GAGLGHRFLKHI 233 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcc---cccHHHHHHHHH
Confidence 4799999999999999999998643 355666677665555556666 89999999999764211 112222222222
Q ss_pred hcCCCCEEEEEeecCCCCC-CC-CcH-HHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNR-DF-SDM-PLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~-d~-eD~-elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.+.+++|||++++.... +. .+. .+++.|...-..-..++.+||+||+|...
T Consensus 234 --erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 234 --ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred --HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 24789999987764211 11 122 22233332211113578999999999753
No 70
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.98 E-value=3e-09 Score=119.11 Aligned_cols=127 Identities=17% Similarity=0.165 Sum_probs=89.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHH---HH
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILH---SV 709 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlk---eI 709 (1266)
..++|+++|.+|||||||.|.+.|+.++.++.-.-||+.......+-...+++|+||||+.... .......+++ ..
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~-~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKK-MHRRHHLMMSVLQNP 149 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccc-hhhhHHHHHHhhhCH
Confidence 4789999999999999999999999999887654455443333334567899999999998653 1121222222 22
Q ss_pred HHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCC
Q 000824 710 KRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPP 767 (1266)
Q Consensus 710 KkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~P 767 (1266)
.+.+ ..+|+|+.|.++.. .+.+....+|..+.+.. ..+.|+|++|.|.+.+
T Consensus 150 ~~a~--q~AD~vvVv~Das~-tr~~l~p~vl~~l~~ys----~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 150 RDAA--QNADCVVVVVDASA-TRTPLHPRVLHMLEEYS----KIPSILVMNKIDKLKQ 200 (379)
T ss_pred HHHH--hhCCEEEEEEeccC-CcCccChHHHHHHHHHh----cCCceeeccchhcchh
Confidence 2222 35899988887764 34555667777777763 4689999999998754
No 71
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.98 E-value=6.6e-09 Score=102.32 Aligned_cols=115 Identities=12% Similarity=0.169 Sum_probs=71.1
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
.+|+|+|++|||||||+|+|++...... ..+..+.+.......+.+ ..+.++||||... ....+..+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~----------~~~~~~~~ 69 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ-YQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER----------FRSLIPSY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCceeeeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHHHH
Confidence 3799999999999999999998754332 223333344333444555 4689999999621 11222333
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
++ ..|++++|.+++... +..+ ...+..+....+. ..++++|.||+|..
T Consensus 70 ~~--~~~~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~ 118 (161)
T cd01861 70 IR--DSSVAVVVYDITNRQ-SFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLS 118 (161)
T ss_pred hc--cCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCC--CCEEEEEEEChhcc
Confidence 33 578999998775321 1111 2233333333221 47899999999975
No 72
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.97 E-value=2.2e-09 Score=107.51 Aligned_cols=113 Identities=21% Similarity=0.302 Sum_probs=67.3
Q ss_pred EEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEE---------------------------------------
Q 000824 637 IMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVG--------------------------------------- 677 (1266)
Q Consensus 637 ILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~g--------------------------------------- 677 (1266)
|+|+|.+++|||||||+|+|..+..++..+.+..-+...++
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 78999999999999999999876554432221111111111
Q ss_pred ----------------EECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHH
Q 000824 678 ----------------TVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLR 741 (1266)
Q Consensus 678 ----------------eI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK 741 (1266)
......+.||||||+.+.. .... ..+.+++ ...|++|||.++.. .....+...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~---~~~~---~~~~~~~--~~~d~vi~V~~~~~-~~~~~~~~~l~ 151 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTN---SEHT---EITEEYL--PKADVVIFVVDANQ-DLTESDMEFLK 151 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSH---TTTS---HHHHHHH--STTEEEEEEEETTS-TGGGHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccch---hhhH---HHHHHhh--ccCCEEEEEeccCc-ccchHHHHHHH
Confidence 0011337999999997632 1122 3344555 46899999987764 23334444444
Q ss_pred HHHHHhCCCCCccEEEEEecc
Q 000824 742 TITDIFGPSIWFNAIVVLTHA 762 (1266)
Q Consensus 742 ~I~eiFG~ei~k~tIVVLTKa 762 (1266)
.+... ...++++|+||+
T Consensus 152 ~~~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 152 QMLDP----DKSRTIFVLNKA 168 (168)
T ss_dssp HHHTT----TCSSEEEEEE-G
T ss_pred HHhcC----CCCeEEEEEcCC
Confidence 44433 245699999985
No 73
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.95 E-value=6.8e-09 Score=123.82 Aligned_cols=127 Identities=18% Similarity=0.155 Sum_probs=83.7
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
.-..|+|||.+|||||||||+|.+... .+..|+.+|.........+.+.+++|+||||+.+.+. ....+-....++
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas---~g~gLg~~fLrh 233 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGAS---EGKGLGLDFLRH 233 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccc---hhhHHHHHHHHH
Confidence 345899999999999999999998744 3466788887776666677889999999999976421 112222222222
Q ss_pred hhcCCCCEEEEEeecCCCC--CCC-CcHHH-HHHHHHHhC---------CCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQN--RDF-SDMPL-LRTITDIFG---------PSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r--~d~-eD~el-LK~I~eiFG---------~ei~k~tIVVLTKaDeL 765 (1266)
+ ..++++|+|++++... .+. .+... .+.|..... .-..+++|||+||+|..
T Consensus 234 i--eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 234 I--ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred H--HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 2 3578999998775321 111 23322 233433321 12358999999999964
No 74
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.95 E-value=6.3e-09 Score=99.96 Aligned_cols=115 Identities=13% Similarity=0.151 Sum_probs=68.8
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE--CCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV--QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI--~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+++|++|+||||++|.|++...... ..+....+.......+ ..+.+.++||||... .......+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~ 69 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER----------FRSITPSY 69 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHH----------HHHHHHHH
Confidence 4799999999999999999998754333 1111122222222233 347789999999732 11122333
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
++ ..|++++|++++... .... ...+..+..... ...++++|+||+|..
T Consensus 70 ~~--~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~ 118 (159)
T cd00154 70 YR--GAHGAILVYDITNRE-SFENLDKWLKELKEYAP--ENIPIILVGNKIDLE 118 (159)
T ss_pred hc--CCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence 33 489999998776421 1111 223333333321 247899999999986
No 75
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.94 E-value=1.2e-08 Score=100.15 Aligned_cols=118 Identities=15% Similarity=0.128 Sum_probs=69.6
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEEC--CEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQ--GIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~--GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+|+|++|||||||+|++++..... ...+..+.+.......+. ...+.++||||.... ..+ ...+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~---~~~~ 69 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY-------LEV---RNEF 69 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCccHHH-------HHH---HHHH
Confidence 479999999999999999999875322 111111112111122233 367889999997311 111 1223
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCC---CCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGP---SIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~---ei~k~tIVVLTKaDeL 765 (1266)
+ ..+++++||.+++.......-...+..+...+.. ....++++|.||+|..
T Consensus 70 ~--~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 70 Y--KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred h--ccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 3 3588999998776431111122344445444432 1357899999999975
No 76
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.93 E-value=1.8e-08 Score=95.70 Aligned_cols=117 Identities=19% Similarity=0.158 Sum_probs=70.9
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+|+|.+|+|||||+|+|++.. +.....+..+...........+ +.+.++||||..+. ..+... +
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~---~ 70 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY-------RAIRRL---Y 70 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc-------hHHHHH---H
Confidence 589999999999999999999987 5555556666666665556677 78999999996321 111111 1
Q ss_pred hhcCCCCEEEEEeecCCCCCCC--CcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDF--SDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~--eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.. ..+.++++.++...-.+. .....+..+...... ..++++|+||+|...
T Consensus 71 ~~--~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 71 YR--AVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRD 122 (161)
T ss_pred Hh--hhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCc
Confidence 11 123333333322110111 111233444443321 568999999999764
No 77
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.93 E-value=1.3e-09 Score=126.67 Aligned_cols=167 Identities=17% Similarity=0.169 Sum_probs=102.0
Q ss_pred HHHHHHHHcchhHHHHhhhcCCCCC----c---chhHHH-HHHHHHHHhCC-C--CCCCccEEEEEccCCCCHHHHHHHH
Q 000824 586 VVAQVLYRLGLAEQLRGRNGGRVGA----F---SFDRAS-AMAEQLEAAGQ-E--PLDFSCTIMVLGKTGVGKSATINSI 654 (1266)
Q Consensus 586 ~laQvLyrLgLaE~Li~~~~~rL~~----f---s~d~a~-~LaeqLe~~~~-e--~lk~slrILLVGpTGVGKSTLINSL 654 (1266)
.+.+.|.+.++.+.++..+.+.+.. . .....+ .+.+.+..... . ....+.+|+|+|++|+|||||+.+|
T Consensus 182 ~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKL 261 (436)
T PRK11889 182 KVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKM 261 (436)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHH
Confidence 3566777777777777666544311 1 111222 23333322111 1 1233578999999999999999999
Q ss_pred hcC------c--cccccCcccceeEEEEEEEEE------------------------CCEEEEEEeCCCCCCCccchhch
Q 000824 655 FDE------V--KFGTDAFQMGTKKVQDVVGTV------------------------QGIKVRVIDTPGLLPSWSDQRQN 702 (1266)
Q Consensus 655 LGr------~--vftvda~rstTre~qei~geI------------------------~GipVtVIDTPGL~DS~gd~~~n 702 (1266)
++. . .+..|++++.+.++...++.. .+..++||||||... .+
T Consensus 262 A~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~------kd 335 (436)
T PRK11889 262 AWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNY------RA 335 (436)
T ss_pred HHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccC------cC
Confidence 853 1 234566665433332222111 135789999999843 34
Q ss_pred HHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 703 EKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 703 eeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
...+.++.+++....++.++||++++....+ +..+.+.|.. ....-+||||.|+..
T Consensus 336 ~~lm~EL~~~lk~~~PdevlLVLsATtk~~d------~~~i~~~F~~--~~idglI~TKLDET~ 391 (436)
T PRK11889 336 SETVEEMIETMGQVEPDYICLTLSASMKSKD------MIEIITNFKD--IHIDGIVFTKFDETA 391 (436)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEECCccChHH------HHHHHHHhcC--CCCCEEEEEcccCCC
Confidence 5667788888877788989999776543222 4455566654 355778999999875
No 78
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.93 E-value=5.3e-09 Score=110.47 Aligned_cols=113 Identities=17% Similarity=0.081 Sum_probs=74.2
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccc-------------------------cC-----cccceeEEEEEEEEECCEEEE
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGT-------------------------DA-----FQMGTKKVQDVVGTVQGIKVR 685 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftv-------------------------da-----~rstTre~qei~geI~GipVt 685 (1266)
+|+|+|.+|+|||||+|+|+.....++ +. .++.|.+....+..+.+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999987543322 11 155677766677778899999
Q ss_pred EEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 686 VIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 686 VIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
|+||||..+ +...+...+ ..+|++|+|++++.. ....+...+..+ ..++ .+++|+|+||+|..
T Consensus 81 liDTpG~~~----------~~~~~~~~~--~~ad~~llVvD~~~~-~~~~~~~~~~~~-~~~~---~~~iIvviNK~D~~ 143 (208)
T cd04166 81 IADTPGHEQ----------YTRNMVTGA--STADLAILLVDARKG-VLEQTRRHSYIL-SLLG---IRHVVVAVNKMDLV 143 (208)
T ss_pred EEECCcHHH----------HHHHHHHhh--hhCCEEEEEEECCCC-ccHhHHHHHHHH-HHcC---CCcEEEEEEchhcc
Confidence 999999731 112222222 358999999887642 222222323322 3333 24678899999975
No 79
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.93 E-value=6.7e-09 Score=103.11 Aligned_cols=115 Identities=8% Similarity=0.045 Sum_probs=68.5
Q ss_pred EEEEEccCCCCHHHHHHHHhcCcccc---ccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFG---TDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vft---vda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
+|+|+|++|+|||||+|.|++..... .......|.........+.+..+.++||||...- .. ....+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~---~~~~~ 70 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESL-------RS---LWDKY 70 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhh-------HH---HHHHH
Confidence 58999999999999999998753211 1111122333233344567899999999998421 11 11223
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCC--CCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGP--SIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~--ei~k~tIVVLTKaDeL 765 (1266)
+ ..+|+++||++++... ........+...+.. ....++++|+||+|..
T Consensus 71 ~--~~~~~~v~vvd~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 71 Y--AECHAIIYVIDSTDRE---RFEESKSALEKVLRNEALEGVPLLILANKQDLP 120 (167)
T ss_pred h--CCCCEEEEEEECchHH---HHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence 3 3588999997765321 111222233333321 1247899999999964
No 80
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.91 E-value=1.2e-08 Score=127.19 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=85.7
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCcc--chhc-hHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWS--DQRQ-NEKILHSVK 710 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~g--d~~~-neeIlkeIK 710 (1266)
.++|+|+|.+|+||||++|+|+|... .+..++++|.+.......+.+.++.++||||..+-.. .... .+.+ .+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i---~~ 78 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQI---AC 78 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHH---HH
Confidence 46899999999999999999999754 5667788898877777777889999999999865321 1111 2222 23
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.++....+|++++|++++.. . ....+...+.+ ...++++|+||+|...
T Consensus 79 ~~l~~~~aD~vI~VvDat~l--e-r~l~l~~ql~e-----~giPvIvVlNK~Dl~~ 126 (772)
T PRK09554 79 HYILSGDADLLINVVDASNL--E-RNLYLTLQLLE-----LGIPCIVALNMLDIAE 126 (772)
T ss_pred HHHhccCCCEEEEEecCCcc--h-hhHHHHHHHHH-----cCCCEEEEEEchhhhh
Confidence 45555679999999776532 1 12333333433 2589999999999763
No 81
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.91 E-value=1.5e-08 Score=99.80 Aligned_cols=116 Identities=16% Similarity=0.216 Sum_probs=69.9
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
.++|+++|++|+|||||+|++++... +..+.+++.........+.+ ..+.++||||..+- ..+ ...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~---~~~ 69 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEF-------SAM---REQ 69 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcch-------hHH---HHH
Confidence 36999999999999999999998643 22333333332233344555 46788999997431 112 222
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+++ ..|++++|.+++... .... ...+..+..... ....+++||.||+|..
T Consensus 70 ~~~--~~~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 70 YMR--TGEGFLLVFSVTDRG-SFEEVDKFHTQILRVKD-RDEFPMILVGNKADLE 120 (164)
T ss_pred HHh--hCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhC-CCCCCEEEEeeCcccc
Confidence 332 478899997776421 1111 122333333222 1246899999999975
No 82
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.90 E-value=1.8e-08 Score=109.20 Aligned_cols=87 Identities=20% Similarity=0.312 Sum_probs=61.4
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhc
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKK 715 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~ 715 (1266)
+|+|+|++|+|||||+|+|++... .+..+..+|.++......+.+.++.++||||+.+.... ...+...+..++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~---~~~~~~~~l~~~-- 75 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAAD---GKGRGRQVIAVA-- 75 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCccccccc---chhHHHHHHHhh--
Confidence 789999999999999999999753 34557777777666666678999999999998653211 112222222232
Q ss_pred CCCCEEEEEeecC
Q 000824 716 TPPDIVLYLDRLD 728 (1266)
Q Consensus 716 ~~pDVVLLVIrld 728 (1266)
..+|++++|++++
T Consensus 76 ~~ad~il~V~D~t 88 (233)
T cd01896 76 RTADLILMVLDAT 88 (233)
T ss_pred ccCCEEEEEecCC
Confidence 2478888887664
No 83
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.89 E-value=1.4e-08 Score=99.84 Aligned_cols=116 Identities=10% Similarity=0.010 Sum_probs=67.4
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhc
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKK 715 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~ 715 (1266)
+|+|+|.+||||||++|+|.+...+.. .+.++ ...........++++.++||||.... .. ....++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~-~~~~t-~g~~~~~~~~~~~~~~l~Dt~G~~~~-------~~---~~~~~~-- 66 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ-IIVPT-VGFNVESFEKGNLSFTAFDMSGQGKY-------RG---LWEHYY-- 66 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc-eecCc-cccceEEEEECCEEEEEEECCCCHhh-------HH---HHHHHH--
Confidence 589999999999999999998643221 11111 11111222356889999999997421 11 112233
Q ss_pred CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhC-CCCCccEEEEEeccCCC
Q 000824 716 TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFG-PSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 716 ~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG-~ei~k~tIVVLTKaDeL 765 (1266)
..+++++||++++...........++.+..... .....+++||+||+|..
T Consensus 67 ~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 67 KNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 358999999877542110011122333322111 11357899999999975
No 84
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.88 E-value=1e-08 Score=106.11 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=75.9
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccc------------c-----CcccceeEEEEEEEE--ECCEEEEEEeCCCCCC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGT------------D-----AFQMGTKKVQDVVGT--VQGIKVRVIDTPGLLP 694 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftv------------d-----a~rstTre~qei~ge--I~GipVtVIDTPGL~D 694 (1266)
-++|+++|++++|||||+++|++...... + .-+..|......... ..++.++||||||..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~- 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE- 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH-
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc-
Confidence 46899999999999999999997532111 1 112334333444445 788999999999972
Q ss_pred CccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 695 SWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 695 S~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
.....+...+ ..+|++++|+++... ......+.++.+... ..+++||+||+|.+
T Consensus 82 ---------~f~~~~~~~~--~~~D~ailvVda~~g-~~~~~~~~l~~~~~~-----~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 ---------DFIKEMIRGL--RQADIAILVVDANDG-IQPQTEEHLKILREL-----GIPIIVVLNKMDLI 135 (188)
T ss_dssp ---------HHHHHHHHHH--TTSSEEEEEEETTTB-STHHHHHHHHHHHHT-----T-SEEEEEETCTSS
T ss_pred ---------ceeeccccee--cccccceeeeecccc-ccccccccccccccc-----ccceEEeeeeccch
Confidence 2333333333 358999999887643 443445556555443 46699999999976
No 85
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.87 E-value=3e-08 Score=97.51 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=69.6
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+++|++|+||||++|++++.... ....+..+.+.......+.+ ..+.++||||.. ........+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~ 69 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS-EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE----------RFRSITSSY 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHHHH
Confidence 48999999999999999999987542 11222223233333445555 578899999962 111222333
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+ ...|++++|.+++.. .+... ...+..+..... -..++++|.||+|...
T Consensus 70 ~--~~~d~~ilv~d~~~~-~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~ 119 (164)
T smart00175 70 Y--RGAVGALLVYDITNR-ESFENLKNWLKELREYAD--PNVVIMLVGNKSDLED 119 (164)
T ss_pred h--CCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhccc
Confidence 3 358999999776532 11111 112233322221 2579999999999653
No 86
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.87 E-value=2.4e-08 Score=103.50 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=71.1
Q ss_pred cEEEEEccCCCCHHHHHHHHhcC-cccccc--------------CcccceeEEEEEEEEECCEEEEEEeCCCCCCCccch
Q 000824 635 CTIMVLGKTGVGKSATINSIFDE-VKFGTD--------------AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQ 699 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr-~vftvd--------------a~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~ 699 (1266)
.+|+|+|.+|+|||||+|.|+.. ..+... ...+.|...........+.++.|+||||..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~----- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD----- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH-----
Confidence 48999999999999999999963 222111 0123333444444556789999999999842
Q ss_pred hchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 700 RQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 700 ~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
....+..+++ .+|++++|++++.. .......+++.+.. ...+.++|+||+|..
T Consensus 78 -----~~~~~~~~~~--~~d~~ilV~d~~~~-~~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~ 130 (194)
T cd01891 78 -----FGGEVERVLS--MVDGVLLLVDASEG-PMPQTRFVLKKALE-----LGLKPIVVINKIDRP 130 (194)
T ss_pred -----HHHHHHHHHH--hcCEEEEEEECCCC-ccHHHHHHHHHHHH-----cCCCEEEEEECCCCC
Confidence 1222233333 58999999887642 11122223333322 246799999999975
No 87
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.86 E-value=2.8e-08 Score=99.95 Aligned_cols=112 Identities=18% Similarity=0.124 Sum_probs=67.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccc---------cC-----cccceeEEEEEEEEE-----CCEEEEEEeCCCCCCCc
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGT---------DA-----FQMGTKKVQDVVGTV-----QGIKVRVIDTPGLLPSW 696 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftv---------da-----~rstTre~qei~geI-----~GipVtVIDTPGL~DS~ 696 (1266)
+|+++|.+|+|||||+|+|++...... +. .++.|.........+ .++.+.|+||||..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF- 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence 799999999999999999997432110 00 112233322222222 4577899999998531
Q ss_pred cchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 697 SDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 697 gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
...+..++. ..|++++|++++.. ....+...+..+.. ...++++|+||+|..
T Consensus 81 ---------~~~~~~~~~--~ad~~i~v~D~~~~-~~~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 81 ---------SYEVSRSLA--ACEGALLLVDATQG-VEAQTLANFYLALE-----NNLEIIPVINKIDLP 132 (179)
T ss_pred ---------HHHHHHHHH--hcCeEEEEEECCCC-ccHhhHHHHHHHHH-----cCCCEEEEEECCCCC
Confidence 122233333 48999999877532 22223333332221 246799999999964
No 88
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.85 E-value=1.8e-08 Score=100.97 Aligned_cols=117 Identities=15% Similarity=0.174 Sum_probs=68.8
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeE--EEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKK--VQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre--~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+|+|.+|||||||+|++++..... .+.++... ............+.++||||.... ..+. ..+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~---~~~ 69 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRE--SYIPTIEDTYRQVISCSKNICTLQITDTTGSHQF-------PAMQ---RLS 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--CcCCcchheEEEEEEECCEEEEEEEEECCCCCcc-------hHHH---HHH
Confidence 589999999999999999999764221 11111111 111111223467899999998431 1111 112
Q ss_pred hhcCCCCEEEEEeecCCCCCCCC-cHHHHHHHHHHhCCC-CCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFS-DMPLLRTITDIFGPS-IWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~e-D~elLK~I~eiFG~e-i~k~tIVVLTKaDeL~ 766 (1266)
+ ...|++++|.+++... +.. -...+..+.+..+.. ...++++|.||+|...
T Consensus 70 ~--~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 70 I--SKGHAFILVYSVTSKQ-SLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred h--hcCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 2 2578889997776432 111 223344455544432 3478999999999753
No 89
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.85 E-value=3.8e-08 Score=96.12 Aligned_cols=116 Identities=12% Similarity=0.166 Sum_probs=68.3
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
.+|+++|++|+||||++|++++...... ..+.++.........+.+ ..+.++||||.... ..+ ...+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~---~~~~ 69 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEK-HESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY-------HAL---GPIY 69 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-cCCccceeEEEEEEEECCEEEEEEEEECCchHHH-------HHh---hHHH
Confidence 3799999999999999999998654321 112222222222222333 46889999995210 111 1122
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+ ..+|++++|.+++... ...+ ...++.+...... ..++++|+||+|...
T Consensus 70 ~--~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~ 119 (162)
T cd04123 70 Y--RDADGAILVYDITDAD-SFQKVKKWIKELKQMRGN--NISLVIVGNKIDLER 119 (162)
T ss_pred h--ccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 2 2589999998775432 1111 1233444444332 578999999999763
No 90
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.85 E-value=3.9e-08 Score=97.31 Aligned_cols=116 Identities=15% Similarity=0.182 Sum_probs=68.8
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+|+|++|||||||+|+|++...... ..+..+.+.......+.+ ..+.++||||... .......+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~ 69 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKED-SQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER----------FRSVTRSY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeEEEEEEEECCEEEEEEEEECcchHH----------HHHhHHHH
Confidence 4799999999999999999997643221 111112222222233444 5688999999731 11122233
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+ ..+|++++|.+++... .... ...+..+..... ...++++|.||+|...
T Consensus 70 ~--~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~ 119 (161)
T cd04113 70 Y--RGAAGALLVYDITNRT-SFEALPTWLSDARALAS--PNIVVILVGNKSDLAD 119 (161)
T ss_pred h--cCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcch
Confidence 3 3589999998776431 1111 223333333332 2468999999999754
No 91
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.85 E-value=2.6e-08 Score=98.37 Aligned_cols=116 Identities=10% Similarity=0.046 Sum_probs=67.6
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEEC--CEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQ--GIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~--GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+++|++|+|||||+|+|++.......... ...........+. ++.+.|+||||... .......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-~~~~~~~~~v~~~~~~~~~~i~D~~G~~~----------~~~~~~~~ 70 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQEST-IGAAFLTQTVNLDDTTVKFEIWDTAGQER----------YRSLAPMY 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-cceeEEEEEEEECCEEEEEEEEeCCchHH----------HHHHHHHH
Confidence 68999999999999999999987643311111 1111111222333 36788999999521 11111122
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+ ...|++++|++++....-......+..+..... ...++++|.||.|..
T Consensus 71 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~ 119 (163)
T cd01860 71 Y--RGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLE 119 (163)
T ss_pred h--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccc
Confidence 2 357999999877632111112233444444322 246789999999965
No 92
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.84 E-value=3e-08 Score=104.96 Aligned_cols=115 Identities=16% Similarity=0.084 Sum_probs=77.0
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC------ccc----ccc-----CcccceeEEEEEEEEECCEEEEEEeCCCCCCCccc
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE------VKF----GTD-----AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSD 698 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr------~vf----tvd-----a~rstTre~qei~geI~GipVtVIDTPGL~DS~gd 698 (1266)
.++|+++|..++|||||+++|++. ... ..+ ..++.|........+..+..++||||||..
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~----- 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA----- 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH-----
Confidence 468999999999999999999864 110 011 135556665555566678899999999983
Q ss_pred hhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 699 QRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 699 ~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
.++..+...+ ..+|++++|+++.. .....+...+..+.. +| ..++|+++||+|..
T Consensus 77 -----~~~~~~~~~~--~~~D~~ilVvda~~-g~~~~~~~~~~~~~~-~~---~~~iIvviNK~D~~ 131 (195)
T cd01884 77 -----DYIKNMITGA--AQMDGAILVVSATD-GPMPQTREHLLLARQ-VG---VPYIVVFLNKADMV 131 (195)
T ss_pred -----HHHHHHHHHh--hhCCEEEEEEECCC-CCcHHHHHHHHHHHH-cC---CCcEEEEEeCCCCC
Confidence 2333333333 35899999988764 344445555665544 22 23578999999975
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.84 E-value=2.7e-08 Score=97.00 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=70.6
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
+|+|+|++|+||||++|.|++.. + ...+.+++.........+.+ ..+.++||||... .......++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~ 68 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-F-VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE----------FSAMRDLYI 68 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-C-CcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHHH
Confidence 58999999999999999999875 2 22334444333333344553 5788999999742 111122233
Q ss_pred hcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+ ..|++++|.+++.......-...+..+..... ....++++|.||+|...
T Consensus 69 ~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 69 R--QGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLEN 118 (160)
T ss_pred h--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccc
Confidence 3 47889999776532111011223333433332 13589999999999764
No 94
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.84 E-value=2.8e-08 Score=102.84 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=69.4
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCc---cc---cccCcccceeEEEEEEEEEC--------------CEEEEEEeCCCCCC
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEV---KF---GTDAFQMGTKKVQDVVGTVQ--------------GIKVRVIDTPGLLP 694 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~---vf---tvda~rstTre~qei~geI~--------------GipVtVIDTPGL~D 694 (1266)
++|+++|..|+|||||+|+|++.. .+ .....+++|.........+. +..+.++||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~- 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA- 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence 479999999999999999999741 11 11112344544433333333 6789999999982
Q ss_pred CccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 695 SWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 695 S~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.+++.+.... ..+|++++|+++... ....+...+.. ...+ ..++++|+||+|...
T Consensus 80 ---------~~~~~~~~~~--~~~d~vi~VvD~~~~-~~~~~~~~~~~-~~~~----~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 80 ---------SLIRTIIGGA--QIIDLMLLVVDATKG-IQTQTAECLVI-GEIL----CKKLIVVLNKIDLIP 134 (192)
T ss_pred ---------HHHHHHHHHH--hhCCEEEEEEECCCC-ccHHHHHHHHH-HHHc----CCCEEEEEECcccCC
Confidence 1222222221 247899999877532 22222223332 2222 368999999999763
No 95
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.84 E-value=3.7e-08 Score=96.23 Aligned_cols=116 Identities=17% Similarity=0.250 Sum_probs=68.5
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+|+|.+||||||++|++++.... ..+.+++.........+.+ ..+.++||||...- ..+ ...+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~l---~~~~ 69 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY-------SAM---RDQY 69 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCCcch-------HHH---HHHH
Confidence 58999999999999999999986432 1233333222233334555 44778999997321 111 1223
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcH-HHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDM-PLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~-elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
++ ..+++++|..++.. ....+. ..+..+.+.. .....+++||.||+|...
T Consensus 70 ~~--~~~~~i~v~~~~~~-~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 70 MR--TGEGFLCVFAINSR-KSFEDIHTYREQIKRVK-DSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred Hh--cCCEEEEEEECCCH-HHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccc
Confidence 33 47888888776642 111111 2233333332 123578999999999753
No 96
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.84 E-value=4.3e-08 Score=97.44 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=68.2
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+++|++|||||||+|+|++..... ...+..+.+.......+.+ ..+.|+||||... .......+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~ 72 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNL-DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER----------YRAITSAY 72 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCChHH----------HHHHHHHH
Confidence 589999999999999999999875322 2222223333333334445 4688999999731 11112223
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
++ ..+++++|.+++.. .+..+ ...+..+.+... ...++++|.||+|..
T Consensus 73 ~~--~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 73 YR--GAVGALLVYDITKK-QTFENVERWLKELRDHAD--SNIVIMLVGNKSDLR 121 (165)
T ss_pred HC--CCCEEEEEEECcCH-HHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccc
Confidence 32 47888888776532 11111 123333333321 236899999999965
No 97
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.83 E-value=5.7e-09 Score=116.14 Aligned_cols=131 Identities=24% Similarity=0.353 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC---CCchhHHHHHHHHHcchhHHHHhhhcCCCCC-cchhHHH-HHHHHHHHhC----
Q 000824 557 YDETREKLQMIRVKFLRLAHRLG---QTPHNVVVAQVLYRLGLAEQLRGRNGGRVGA-FSFDRAS-AMAEQLEAAG---- 627 (1266)
Q Consensus 557 ~~eLr~ELq~LR~kLlrLv~Rlg---~sPe~~~laQvLyrLgLaE~Li~~~~~rL~~-fs~d~a~-~LaeqLe~~~---- 627 (1266)
.+.+++||..||.+|.++...+. ..|....+.+.|...++.+.++..+...+.. .....++ .+.+.|...-
T Consensus 106 ~~~~~~e~~~lk~~l~~~~~~~~~~~~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 185 (282)
T TIGR03499 106 PEELRKELEALRELLERLLAGLAWLQRDPEGAKLLERLLRAGVSPELARELLEKLPERADAEDAWRWLREALEKMLPVKP 185 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhccCC
Confidence 46789999999999988877532 3455577899999999999999988776643 2333343 2333333221
Q ss_pred --CCCCCCccEEEEEccCCCCHHHHHHHHhcCcc----------ccccCcccceeEEEEEEEEECCEEEEEE
Q 000824 628 --QEPLDFSCTIMVLGKTGVGKSATINSIFDEVK----------FGTDAFQMGTKKVQDVVGTVQGIKVRVI 687 (1266)
Q Consensus 628 --~e~lk~slrILLVGpTGVGKSTLINSLLGr~v----------ftvda~rstTre~qei~geI~GipVtVI 687 (1266)
......+..|+|+|+||||||||+.+|+.... +..+.++++..+++..++.+.++++.++
T Consensus 186 ~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~ 257 (282)
T TIGR03499 186 EEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVA 257 (282)
T ss_pred ccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceecc
Confidence 11123456899999999999999999886321 2234444444444444444445555443
No 98
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.83 E-value=3.2e-08 Score=97.73 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=67.9
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+++|++|+||||++|+|++........ +..+.+.......+.+ +.+.|+||||... .......+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~ 69 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLA-ATIGVDFKVKTLTVDGKKVKLAIWDTAGQER----------FRTLTSSY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccC-CcccceEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHHH
Confidence 479999999999999999999864322111 1111121212223333 6789999999632 11112223
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+ ...|++++|.+++... +... ...+..+.... .....++++|.||+|..
T Consensus 70 ~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~-~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 70 Y--RGAQGVILVYDVTRRD-TFTNLETWLNELETYS-TNNDIVKMLVGNKIDKE 119 (161)
T ss_pred h--CCCCEEEEEEECCCHH-HHHhHHHHHHHHHHhC-CCCCCcEEEEEECCccc
Confidence 3 2589999998775321 1111 12333343332 23357789999999976
No 99
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.82 E-value=6e-08 Score=96.82 Aligned_cols=118 Identities=9% Similarity=0.088 Sum_probs=69.3
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
.++|+|+|++|+|||||++++.+........ +..+.+.......+.+ ..+.|+||||.. ........
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~ 71 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG-NTIGVDFTMKTLEIEGKRVKLQIWDTAGQE----------RFRTITQS 71 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC-CccceEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHHH
Confidence 4799999999999999999998753222111 1111222223334555 578999999962 11111222
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
++ ...|++++|.+++....-......+..+.... ....++++|.||+|...
T Consensus 72 ~~--~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 72 YY--RSANGAIIAYDITRRSSFESVPHWIEEVEKYG--ASNVVLLLIGNKCDLEE 122 (165)
T ss_pred Hh--ccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECccccc
Confidence 33 24799999987764211111123344444322 12467999999999753
No 100
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.82 E-value=3.7e-08 Score=103.78 Aligned_cols=124 Identities=14% Similarity=0.145 Sum_probs=72.5
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccce-eEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGT-KKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstT-re~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
.+|+|+|.+|||||||+|.+++... .. .+.+++ ..+......+.| +.+.|+||||+.... .....+.......
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f-~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~--~~~~~e~~~~~~~ 76 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEF-PE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP--GTAGQEWMDPRFR 76 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCC-Cc-ccCCccccccceeEEEECCEEEEEEEEeCCCcccCC--ccchhHHHHHHHh
Confidence 3799999999999999999998642 22 233333 233333345566 567899999985321 1112222221112
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhC-CCCCccEEEEEeccCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFG-PSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG-~ei~k~tIVVLTKaDeL 765 (1266)
+ ....|++++|.+++.. .+... ...++.+...+. .....+++||.||+|..
T Consensus 77 ~--~~~ad~iilv~D~~~~-~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 77 G--LRNSRAFILVYDICSP-DSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred h--hccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 2 2468999999887642 11111 122333443331 12347999999999974
No 101
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.82 E-value=3.6e-08 Score=99.28 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=69.6
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
-++|+|+|++|||||||+|++++.......... .+.+.......+.+ ..+.|+||||.. .+......
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 72 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-IGVEFGARMITIDGKQIKLQIWDTAGQE----------SFRSITRS 72 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-cceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHH
Confidence 369999999999999999999987543332221 12222222233343 578999999952 12222233
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
++ ..+|++++|.+++.. ....+ ...+..+..... ...+++||.||.|...
T Consensus 73 ~~--~~~d~il~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 73 YY--RGAAGALLVYDITRR-ETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLES 123 (168)
T ss_pred Hh--ccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence 33 358999999887632 11111 122333333221 2478999999999763
No 102
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.81 E-value=7.3e-08 Score=95.49 Aligned_cols=115 Identities=16% Similarity=0.243 Sum_probs=68.5
Q ss_pred cEEEEEccCCCCHHHHHHHHhcC-ccccccCcccce-eEEEEEEEEE---CCEEEEEEeCCCCCCCccchhchHHHHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDE-VKFGTDAFQMGT-KKVQDVVGTV---QGIKVRVIDTPGLLPSWSDQRQNEKILHSV 709 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr-~vftvda~rstT-re~qei~geI---~GipVtVIDTPGL~DS~gd~~~neeIlkeI 709 (1266)
++|+++|.+|||||||+++|... ..+.. .+.+++ .++......+ ..+.+.++||||... ...+ +
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~---~ 69 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPK-NYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-------YSDM---V 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCc-cCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-------HHHH---H
Confidence 47999999999999999999864 23332 233332 2332222222 237899999999621 1111 2
Q ss_pred HHhhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 710 KRFIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 710 KkfLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
..++ ..+|++++|.+++... +..+ ...+..+... ....++++|.||+|...
T Consensus 70 ~~~~--~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 70 SNYW--ESPSVFILVYDVSNKA-SFENCSRWVNKVRTA---SKHMPGVLVGNKMDLAD 121 (164)
T ss_pred HHHh--CCCCEEEEEEECcCHH-HHHHHHHHHHHHHHh---CCCCCEEEEEECccccc
Confidence 2333 3689999998876321 1111 1223333332 13478999999999753
No 103
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.81 E-value=3.8e-08 Score=96.99 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=68.9
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+|+|.+|||||||+|.++..... ..+.+++.........+.+ +.+.|+||||...- ..+. ..+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~---~~~ 69 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQF-------TAMR---DLY 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcccc-------chHH---HHH
Confidence 58999999999999999999975422 2233333322333334455 45678999997421 1111 122
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+ ...|++++|.+++... +..+ ...++.+..... ....++++|.||+|...
T Consensus 70 ~--~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 70 I--KNGQGFVLVYSITSQS-SFNDLQDLREQILRVKD-TENVPMVLVGNKCDLED 120 (163)
T ss_pred h--hcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 2 2578899987776421 1111 223334443322 23578999999999653
No 104
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.80 E-value=3.5e-08 Score=101.80 Aligned_cols=114 Identities=13% Similarity=0.167 Sum_probs=70.3
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
...+|+++|.+||||||++|.|.+.......+ |.........+.+.++.++||||.... .... ..+
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~---~~~ 81 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQP----TQHPTSEELAIGNIKFTTFDLGGHQQA-------RRLW---KDY 81 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccccceEEEEECCEEEEEEECCCCHHH-------HHHH---HHH
Confidence 45799999999999999999999874332211 222222333457899999999998321 1111 233
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCC--CCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGP--SIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~--ei~k~tIVVLTKaDeL 765 (1266)
+ ...|+++||++++.... -......+.+++.. ....++++|.||.|..
T Consensus 82 ~--~~ad~ii~vvD~~~~~~---~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 82 F--PEVNGIVYLVDAYDKER---FAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred h--CCCCEEEEEEECCcHHH---HHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 3 35899999977653211 11112223333321 1247899999999963
No 105
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.80 E-value=4.7e-08 Score=98.87 Aligned_cols=114 Identities=13% Similarity=0.147 Sum_probs=70.4
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
..++|+++|++|||||||+|+|++..... +.+ |.........+.++.+.++||||... .......+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~---~~~-t~g~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~ 78 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDT---ISP-TLGFQIKTLEYEGYKLNIWDVGGQKT----------LRPYWRNY 78 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC---cCC-ccccceEEEEECCEEEEEEECCCCHH----------HHHHHHHH
Confidence 45799999999999999999999874322 111 11122223345688999999999732 11112233
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCC--CCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGP--SIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~--ei~k~tIVVLTKaDeL 765 (1266)
+ ...|+++||.+++..... .....++...+.. ....+++||.||+|..
T Consensus 79 ~--~~~d~~i~v~d~~~~~s~---~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 79 F--ESTDALIWVVDSSDRLRL---DDCKRELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred h--CCCCEEEEEEECCCHHHH---HHHHHHHHHHHhChhhcCCCEEEEEECcccc
Confidence 3 358999999877643111 1122233333321 1357999999999975
No 106
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.80 E-value=8.9e-08 Score=105.12 Aligned_cols=79 Identities=23% Similarity=0.302 Sum_probs=48.3
Q ss_pred EEEEEEeCCCCCCCcc-c--hhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEE
Q 000824 682 IKVRVIDTPGLLPSWS-D--QRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIV 757 (1266)
Q Consensus 682 ipVtVIDTPGL~DS~g-d--~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIV 757 (1266)
..++||||||+..... . ......+.+.+..|++. +.+++|+|+++.. .+...+ ..+.+.+.. .++++++
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~-~~~IIL~Vvda~~-d~~~~d~l~ia~~ld~-----~~~rti~ 197 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISK-EECLILAVTPANV-DLANSDALKLAKEVDP-----QGERTIG 197 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhC-ccCeEEEEEECCC-CCCchhHHHHHHHHHH-----cCCcEEE
Confidence 4589999999974321 1 11223444556667653 3458888876643 233333 244444432 3689999
Q ss_pred EEeccCCCCC
Q 000824 758 VLTHAASAPP 767 (1266)
Q Consensus 758 VLTKaDeL~P 767 (1266)
|+||+|.+.+
T Consensus 198 ViTK~D~~~~ 207 (240)
T smart00053 198 VITKLDLMDE 207 (240)
T ss_pred EEECCCCCCc
Confidence 9999998853
No 107
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.79 E-value=4e-08 Score=97.01 Aligned_cols=114 Identities=11% Similarity=0.058 Sum_probs=67.9
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhc
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKK 715 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~ 715 (1266)
+|+++|..|+||||++|++++..... +.. |.........+.+..+.++||||...- ... ...+++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~---~~~-t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~---~~~~~~- 65 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT---TIP-TIGFNVETVEYKNVSFTVWDVGGQDKI-------RPL---WKHYYE- 65 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC---CCC-CcCcceEEEEECCEEEEEEECCCChhh-------HHH---HHHHhc-
Confidence 48999999999999999999976211 111 111122233456889999999997421 111 122332
Q ss_pred CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 716 TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 716 ~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
..|++++|.+++....-..-...+..+..... ....++++|+||+|...
T Consensus 66 -~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 66 -NTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPG 114 (158)
T ss_pred -cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCcc
Confidence 47999999777643111011122222222111 23579999999999764
No 108
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.79 E-value=4.5e-08 Score=94.37 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=66.1
Q ss_pred EEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcC
Q 000824 637 IMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKT 716 (1266)
Q Consensus 637 ILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~ 716 (1266)
|+|+|++|+|||||+|.|.+... ..+..+.....+. .....++.+.++||||... .......++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~-- 66 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-SEDTIPTVGFNMR--KVTKGNVTLKVWDLGGQPR----------FRSMWERYCR-- 66 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-CcCccCCCCcceE--EEEECCEEEEEEECCCCHh----------HHHHHHHHHh--
Confidence 78999999999999999999743 2222222222222 2334668899999999731 1122233333
Q ss_pred CCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCC--CCCccEEEEEeccCCC
Q 000824 717 PPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGP--SIWFNAIVVLTHAASA 765 (1266)
Q Consensus 717 ~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~--ei~k~tIVVLTKaDeL 765 (1266)
.+|++++|++++... .-......+...+.. ....++++|+||.|..
T Consensus 67 ~~d~ii~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 67 GVNAIVYVVDAADRT---ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114 (159)
T ss_pred cCCEEEEEEECCCHH---HHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 478999997765321 011112223332221 1246899999999965
No 109
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.78 E-value=8.3e-08 Score=95.68 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=67.7
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+++|++||||||++|.+++..... ...+..+.+.......+.+ +.+.|+||||... .......+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~ 71 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER----------FRTITSSY 71 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHh----------HHHHHHHH
Confidence 689999999999999999999764322 1112222233323334444 4688999999621 11122233
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+ ...|++++|.+++... +... ...+..+.... ....+.++|.||+|..
T Consensus 72 ~--~~~~~ii~v~d~~~~~-s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 72 Y--RGAHGIIIVYDVTDQE-SFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLT 120 (166)
T ss_pred h--CcCCEEEEEEECcCHH-HHHhHHHHHHHHHHhC--CCCCcEEEEEEChhcc
Confidence 3 3589999998775321 1111 12233333322 1246899999999964
No 110
>PLN03118 Rab family protein; Provisional
Probab=98.78 E-value=4.9e-08 Score=102.64 Aligned_cols=121 Identities=16% Similarity=0.237 Sum_probs=69.7
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHH
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHS 708 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlke 708 (1266)
.+..++|+|+|.+|||||||+|+|++...-... +............+.+ +.+.|+||||...- ..+
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~--- 78 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLA--PTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF-------RTL--- 78 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcC--CCceeEEEEEEEEECCEEEEEEEEECCCchhh-------HHH---
Confidence 344689999999999999999999986532211 1111222222233444 57899999997421 111
Q ss_pred HHHhhhcCCCCEEEEEeecCCCCCCCCcH-HHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 709 VKRFIKKTPPDIVLYLDRLDMQNRDFSDM-PLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 709 IKkfLk~~~pDVVLLVIrld~~r~d~eD~-elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
...+++ ..|++++|.+++.. .+.... ..+..+...+......++++|.||+|...
T Consensus 79 ~~~~~~--~~d~~vlv~D~~~~-~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 79 TSSYYR--NAQGIILVYDVTRR-ETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred HHHHHh--cCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 122332 47999999777532 111111 11222222233223467899999999753
No 111
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.78 E-value=3.9e-08 Score=97.41 Aligned_cols=116 Identities=15% Similarity=0.185 Sum_probs=67.7
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
.+|+|+|++|||||||+|++++..... .+.+++.........+.+ +.+.++||||...- ..+ ...+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~-------~~~---~~~~ 68 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD--DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF-------SAM---RDQY 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCcccc-------hHH---HHHH
Confidence 379999999999999999999864322 222233222233334444 56789999997431 111 1223
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
++ ..+++++|.+++... +... ......+.+.... ...++++|.||+|...
T Consensus 69 ~~--~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 69 MR--TGEGFLLVYSITDRQ-SFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLES 119 (164)
T ss_pred Hh--hCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 32 478888887765321 1111 1122333333221 2468999999999753
No 112
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.77 E-value=8.3e-08 Score=94.67 Aligned_cols=115 Identities=14% Similarity=0.125 Sum_probs=67.1
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEEC----CEEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQ----GIKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~----GipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
++|+|+|.+|+|||||+|.+++.... ....+..+.+.......+. .+.+.|+||||... ...+ ..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~---~~ 69 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFT-KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-------FDAI---TK 69 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-------HHHh---HH
Confidence 37999999999999999999986322 1111222223222222333 46799999999521 1111 12
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.++ ...|++++|.+++... .... ...+..+.... ...++++|.||+|...
T Consensus 70 ~~~--~~~~~~v~v~d~~~~~-s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 70 AYY--RGAQACILVFSTTDRE-SFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLD 120 (162)
T ss_pred HHh--cCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhC---CCCCEEEEEEChhccc
Confidence 333 3588899997776432 1111 12222232222 2478999999999764
No 113
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.77 E-value=1.2e-07 Score=94.34 Aligned_cols=118 Identities=15% Similarity=0.152 Sum_probs=67.3
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+|+|++|+|||||+|+|++....... .+..+.+.......+.+ +.+.|+||||... .......+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~ 69 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVTVDDKLVTLQIWDTAGQER----------FQSLGVAF 69 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCc-CCccceEEEEEEEEECCEEEEEEEEeCCChHH----------HHhHHHHH
Confidence 48999999999999999999987432211 11112222222234444 4567999999731 11111223
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcH-HHHHHHHHHhCC--CCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDM-PLLRTITDIFGP--SIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~-elLK~I~eiFG~--ei~k~tIVVLTKaDeL~ 766 (1266)
+ ..+|+++||.+++... ..... ...+.+...+.. ....++++|.||+|...
T Consensus 70 ~--~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 70 Y--RGADCCVLVYDVTNPK-SFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred h--cCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 3 3588999997765321 11111 122222232221 12478999999999874
No 114
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.77 E-value=3.3e-08 Score=119.99 Aligned_cols=122 Identities=17% Similarity=0.284 Sum_probs=92.1
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIK 714 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk 714 (1266)
.+|+++|.+||||||++|+|+|. ...++.+++.|.+-.+.+....|..+.+||.||..+-. ....++.+ .++|+.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~-~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~-~~S~DE~V---ar~~ll 78 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGA-NQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLT-AYSEDEKV---ARDFLL 78 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhcc-CceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCC-CCCchHHH---HHHHHh
Confidence 57999999999999999999997 34678899999999998889999999999999997632 22333444 356777
Q ss_pred cCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCCCC
Q 000824 715 KTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPDG 769 (1266)
Q Consensus 715 ~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~Pde 769 (1266)
+.+||+|+-|++++.- ++. |....+++ ++..++++++|.+|.+...+
T Consensus 79 ~~~~D~ivnVvDAtnL-----eRn-LyltlQLl--E~g~p~ilaLNm~D~A~~~G 125 (653)
T COG0370 79 EGKPDLIVNVVDATNL-----ERN-LYLTLQLL--ELGIPMILALNMIDEAKKRG 125 (653)
T ss_pred cCCCCEEEEEcccchH-----HHH-HHHHHHHH--HcCCCeEEEeccHhhHHhcC
Confidence 8899999999666532 222 22222222 23678999999999886544
No 115
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.77 E-value=9.2e-08 Score=94.41 Aligned_cols=111 Identities=13% Similarity=0.112 Sum_probs=65.7
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE-CCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV-QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIK 714 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI-~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk 714 (1266)
+|+|+|++||||||++|.+++.......+ |.........+ ....+.++||||... .......++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~~- 65 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIP----TVGFNVEMLQLEKHLSLTVWDVGGQEK----------MRTVWKCYL- 65 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccC----ccCcceEEEEeCCceEEEEEECCCCHh----------HHHHHHHHh-
Confidence 58999999999999999999876433211 11111111112 347899999999731 111112233
Q ss_pred cCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCC--CCccEEEEEeccCCC
Q 000824 715 KTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPS--IWFNAIVVLTHAASA 765 (1266)
Q Consensus 715 ~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~e--i~k~tIVVLTKaDeL 765 (1266)
...|+++||++.+... . -......+.+.+... ...++++|+||+|..
T Consensus 66 -~~~~~iv~v~D~~~~~-~--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 66 -ENTDGLVYVVDSSDEA-R--LDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred -ccCCEEEEEEECCcHH-H--HHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 2478999997765321 1 112223333333221 357899999999974
No 116
>COG2262 HflX GTPases [General function prediction only]
Probab=98.76 E-value=2e-07 Score=108.10 Aligned_cols=125 Identities=17% Similarity=0.208 Sum_probs=81.1
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE-CCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV-QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI-~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
..|.|+|.||+||||++|+|.+..+..-+.. .+|-+.......+ +|.++.+.||-||... -...+....+..+
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~L-FATLdpttR~~~l~~g~~vlLtDTVGFI~~-----LP~~LV~AFksTL 266 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQL-FATLDPTTRRIELGDGRKVLLTDTVGFIRD-----LPHPLVEAFKSTL 266 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccc-cccccCceeEEEeCCCceEEEecCccCccc-----CChHHHHHHHHHH
Confidence 5899999999999999999998765543321 1222222222233 3799999999999863 3455666666555
Q ss_pred hc-CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCC
Q 000824 714 KK-TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPP 767 (1266)
Q Consensus 714 k~-~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~P 767 (1266)
.. ..+|++|.|++++..... ........+..-+|.. ..++|+|+||.|.+++
T Consensus 267 EE~~~aDlllhVVDaSdp~~~-~~~~~v~~vL~el~~~-~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEIL-EKLEAVEDVLAEIGAD-EIPIILVLNKIDLLED 319 (411)
T ss_pred HHhhcCCEEEEEeecCChhHH-HHHHHHHHHHHHcCCC-CCCEEEEEecccccCc
Confidence 43 358999999887654221 2222222222323332 3799999999998864
No 117
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.76 E-value=7.4e-08 Score=106.94 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=75.4
Q ss_pred EEEEEccCCCCHHHHHHHHhcCcc------------cccc-----CcccceeEEEEEEEEECCEEEEEEeCCCCCCCccc
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVK------------FGTD-----AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSD 698 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~v------------ftvd-----a~rstTre~qei~geI~GipVtVIDTPGL~DS~gd 698 (1266)
+|+|+|.+|+|||||+|+|+.... ..++ ..++.|.........+.+.+++||||||..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 589999999999999999974211 0111 1345566666677788999999999999853
Q ss_pred hhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 699 QRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 699 ~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
...++..++. ..|++++|+++... ....+..+++.+.. ...+.++++||+|..
T Consensus 77 ------f~~~~~~~l~--~aD~ailVVDa~~g-~~~~t~~~~~~~~~-----~~~p~ivviNK~D~~ 129 (270)
T cd01886 77 ------FTIEVERSLR--VLDGAVAVFDAVAG-VEPQTETVWRQADR-----YNVPRIAFVNKMDRT 129 (270)
T ss_pred ------HHHHHHHHHH--HcCEEEEEEECCCC-CCHHHHHHHHHHHH-----cCCCEEEEEECCCCC
Confidence 1122333333 37899999877542 33334455555443 246889999999965
No 118
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.76 E-value=2.2e-08 Score=99.30 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=68.3
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEEC--CEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQ--GIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~--GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+++|++|+|||||+|+|++..... .+.++..........+. .+.+.++||||..... . +...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~-------~----~~~~ 67 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPT--EYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD-------R----LRPL 67 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeEEEEEECCEEEEEEEEeCCCccccc-------c----cchh
Confidence 489999999999999999999875421 11122222122222333 3568999999985310 0 1111
Q ss_pred hhcCCCCEEEEEeecCCCC-CCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQN-RDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPP 767 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r-~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~P 767 (1266)
.....|++++|.+++... +.......+..+.... ...++++|.||+|...+
T Consensus 68 -~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 68 -SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC---PNVPIILVGTKIDLRDD 119 (171)
T ss_pred -hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhhc
Confidence 113589999998776421 1111112333333322 25899999999997754
No 119
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.75 E-value=7.3e-08 Score=98.51 Aligned_cols=114 Identities=14% Similarity=0.114 Sum_probs=70.9
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
...+|+|+|+.|||||||+|.|.+....... .|.........+.+.++.++||||... ... ....+
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~----~T~~~~~~~i~~~~~~~~l~D~~G~~~-------~~~---~~~~~ 83 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHV----PTLHPTSEELTIGNIKFKTFDLGGHEQ-------ARR---LWKDY 83 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccC----CccCcceEEEEECCEEEEEEECCCCHH-------HHH---HHHHH
Confidence 3579999999999999999999986432211 122222234456789999999999631 111 11233
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCC--CCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGP--SIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~--ei~k~tIVVLTKaDeL 765 (1266)
+. ..++++||++++....- ......+.+.+.. ....+++||+||+|..
T Consensus 84 ~~--~ad~iilV~D~~~~~s~---~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 84 FP--EVDGIVFLVDAADPERF---QESKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred hc--cCCEEEEEEECCcHHHH---HHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 33 47899999776532111 1123344444432 2347999999999974
No 120
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.74 E-value=1.1e-07 Score=95.31 Aligned_cols=115 Identities=16% Similarity=0.151 Sum_probs=69.5
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
..++|+|+|++|+|||||+|.|.+..........+ .......+.+..+.++||||... ....+..+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g----~~~~~i~~~~~~~~~~D~~G~~~----------~~~~~~~~ 78 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQG----FNIKTVQSDGFKLNVWDIGGQRA----------IRPYWRNY 78 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCC----cceEEEEECCEEEEEEECCCCHH----------HHHHHHHH
Confidence 36799999999999999999999974322211111 11223345688999999999731 11222333
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCC--CCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGP--SIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~--ei~k~tIVVLTKaDeL~ 766 (1266)
+ ..+|++++|++++.... . ......+...+.. ....++++++||+|...
T Consensus 79 ~--~~~~~ii~v~D~~~~~~-~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 79 F--ENTDCLIYVIDSADKKR-L--EEAGAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred h--cCCCEEEEEEeCCCHHH-H--HHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 3 35788999977653211 0 1112222222211 12478999999999753
No 121
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.74 E-value=1.4e-07 Score=94.73 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=67.8
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
.++|+|+|++|||||||+|.+++... .....+..+.+.......+.+ +.+.|+||||... .......
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----------~~~~~~~ 71 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF-NPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER----------FRTITTA 71 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC-CcccccCccceEEEEEEEECCEEEEEEEEeCCchHH----------HHHHHHH
Confidence 47999999999999999999998642 111111111122212223444 5688999999631 1111223
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
++ ...|++++|.+++.. .+... ...+..+.... ....++++|.||+|...
T Consensus 72 ~~--~~ad~~i~v~d~~~~-~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 72 YY--RGAMGIILVYDITDE-KSFENIRNWMRNIEEHA--SEDVERMLVGNKCDMEE 122 (167)
T ss_pred Hh--CCCCEEEEEEECcCH-HHHHhHHHHHHHHHHhC--CCCCcEEEEEECccccc
Confidence 33 358999999877532 11111 12233333321 12468999999999763
No 122
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.74 E-value=1.7e-07 Score=93.33 Aligned_cols=117 Identities=16% Similarity=0.172 Sum_probs=68.8
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
-.+|+++|++|+|||||++++++..... ......+.+.......+.+ +.+.++||||... .......
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~ 75 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER----------FRSITQS 75 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHHH
Confidence 4799999999999999999999653221 1112222233333345566 4578899999632 1111123
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
++. ..|++++|.+++... .... ...+..+..... ...+.++|.||+|...
T Consensus 76 ~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 76 YYR--SANALILTYDITCEE-SFRCLPEWLREIEQYAN--NKVITILVGNKIDLAE 126 (169)
T ss_pred Hhc--CCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 333 588999997765321 1111 123333443332 2467899999999753
No 123
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.73 E-value=1.8e-08 Score=101.65 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=48.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGL 692 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL 692 (1266)
...+|+++|++|||||||||+|++.....++..+++|+.++.+. .+..+.+|||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYIT---LMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEE---cCCCEEEEECcCC
Confidence 35789999999999999999999998888888888888765543 2445899999996
No 124
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.73 E-value=1.3e-07 Score=97.90 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=68.2
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccce-eEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGT-KKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstT-re~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
++|+|+|.+|||||||+|.+++.... ...+..++ .........+.+ +.+.|+||||-. .+......
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 69 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFL-NGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQE----------RFRSVTHA 69 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-ccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcH----------HHHHhhHH
Confidence 47999999999999999999886432 22222222 222222233444 568899999952 11111122
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
++ ..+|++++|.+++... +... ...+..+.+... ...++++|.||+|...
T Consensus 70 ~~--~~ad~~i~v~D~~~~~-s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 70 YY--RDAHALLLLYDITNKA-SFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSG 120 (191)
T ss_pred Hc--cCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchh
Confidence 33 3578999998775421 1111 223344444322 2468999999999753
No 125
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.72 E-value=1.7e-07 Score=93.96 Aligned_cols=116 Identities=13% Similarity=0.074 Sum_probs=66.1
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccc-eeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMG-TKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rst-Tre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
++|+++|++||||||++|.+++..... .+.++ +.+.........+ ..+.++||||.... ..+ ...
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~-------~~~---~~~ 69 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS--AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERY-------RTI---TTA 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH-------HHH---HHH
Confidence 589999999999999999999864211 12111 1111111222333 67899999997321 111 122
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
++ ...|++++|.+++.......-...++.+..... ...++++|.||+|...
T Consensus 70 ~~--~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~ 120 (165)
T cd01865 70 YY--RGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVILVGNKCDMED 120 (165)
T ss_pred Hc--cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCCEEEEEECcccCc
Confidence 22 368999999776532110011122333333221 1467999999999753
No 126
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.72 E-value=1.5e-07 Score=99.64 Aligned_cols=117 Identities=17% Similarity=0.188 Sum_probs=69.8
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEEC---CEEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQ---GIKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~---GipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
++|+|+|.+|||||||+|.+++.. |.....+..+.+.......+. .+.+.|+||||... ... .+..
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~-~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-------~~~---l~~~ 69 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG-FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-------GGK---MLDK 69 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-------HHH---HHHH
Confidence 479999999999999999999763 222212222233333333443 36789999999621 111 1223
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCC-CCCccEEEEEeccCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGP-SIWFNAIVVLTHAASA 765 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~-ei~k~tIVVLTKaDeL 765 (1266)
++ ...|++|+|.+++... .... ...+..+.+.... ....++++|.||+|..
T Consensus 70 ~~--~~ad~iilV~D~t~~~-s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 70 YI--YGAHAVFLVYDVTNSQ-SFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred Hh--hcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 33 3589999998776421 1111 1234445444432 1234688999999975
No 127
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.72 E-value=2.4e-07 Score=93.56 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=68.4
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+++|++|||||||++.+++... ..........+.......+.+ +.+.++||||...- ...+ +..+
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~---~~~~ 72 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERF------RKSM---VQHY 72 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHH------HHhh---HHHh
Confidence 6899999999999999999987532 111111111222222334455 67899999996310 1111 1222
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcH-HHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDM-PLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~-elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+ ..+|++++|.+++.. .+.... ..+..+... ......++++|.||+|...
T Consensus 73 ~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 73 Y--RNVHAVVFVYDVTNM-ASFHSLPSWIEECEQH-SLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred h--cCCCEEEEEEECCCH-HHHHhHHHHHHHHHHh-cCCCCCCEEEEEECccchh
Confidence 2 358999999887632 111121 222233322 2223579999999999653
No 128
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.72 E-value=1.1e-07 Score=96.46 Aligned_cols=111 Identities=10% Similarity=0.117 Sum_probs=67.4
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhc
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKK 715 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~ 715 (1266)
+|+|+|+.||||||++|.|.+. +.. .+.+ |.........+.+..+.++||||-.. ...+ ...++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~--~~~-~~~~-t~g~~~~~~~~~~~~~~i~D~~G~~~-------~~~~---~~~~~-- 64 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE--IPK-KVAP-TVGFTPTKLRLDKYEVCIFDLGGGAN-------FRGI---WVNYY-- 64 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC--CCc-cccC-cccceEEEEEECCEEEEEEECCCcHH-------HHHH---HHHHH--
Confidence 4899999999999999999986 221 1111 11112223445789999999999621 1111 23343
Q ss_pred CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCC--CCCccEEEEEeccCCC
Q 000824 716 TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGP--SIWFNAIVVLTHAASA 765 (1266)
Q Consensus 716 ~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~--ei~k~tIVVLTKaDeL 765 (1266)
...|+++||++.+... ... .....+..++.. ....+++||.||.|..
T Consensus 65 ~~a~~ii~V~D~s~~~-s~~--~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 113 (167)
T cd04161 65 AEAHGLVFVVDSSDDD-RVQ--EVKEILRELLQHPRVSGKPILVLANKQDKK 113 (167)
T ss_pred cCCCEEEEEEECCchh-HHH--HHHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence 3589999998776432 111 122233333322 1257899999999964
No 129
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.72 E-value=1.1e-07 Score=98.07 Aligned_cols=116 Identities=14% Similarity=0.124 Sum_probs=67.7
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEE---EECCEEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVG---TVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~g---eI~GipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
.++|+++|.+||||||++|+++...... ..+........... ...++.+.++||||.... ..+ ..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~---~~ 70 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN--TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL-------RPL---WK 70 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC--cCCccccceeEEEeeccCCCceEEEEEECCCcHhH-------HHH---HH
Confidence 4689999999999999999998764321 12211111122222 224688999999997210 111 12
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
.++ ...|+++||++++... ...+ ...+..+..... ....+++||+||+|..
T Consensus 71 ~~~--~~~d~ii~v~D~~~~~-~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 71 SYT--RCTDGIVFVVDSVDVE-RMEEAKTELHKITRFSE-NQGVPVLVLANKQDLP 122 (183)
T ss_pred HHh--ccCCEEEEEEECCCHH-HHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCcc
Confidence 222 3588999998765421 1111 112233333222 2357899999999964
No 130
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.72 E-value=7.6e-08 Score=112.22 Aligned_cols=118 Identities=14% Similarity=0.073 Sum_probs=79.6
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCccccc-------------------------c-----CcccceeEEEEEEEEECC
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFGT-------------------------D-----AFQMGTKKVQDVVGTVQG 681 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~vftv-------------------------d-----a~rstTre~qei~geI~G 681 (1266)
+..++|+++|..++|||||+|.|+......+ + ..++.|.++......+.+
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 3468999999999999999999995432211 1 146778888777778889
Q ss_pred EEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCC-CCCCCcHHHHHHHHHHhCCCCCccEEEEEe
Q 000824 682 IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQ-NRDFSDMPLLRTITDIFGPSIWFNAIVVLT 760 (1266)
Q Consensus 682 ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~-r~d~eD~elLK~I~eiFG~ei~k~tIVVLT 760 (1266)
+++.|+||||..+- .+.+...+ ..+|+++||++++.. .........+..+ ..++ ..+++||+|
T Consensus 84 ~~i~liDtpG~~~~----------~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~~---~~~iivviN 147 (425)
T PRK12317 84 YYFTIVDCPGHRDF----------VKNMITGA--SQADAAVLVVAADDAGGVMPQTREHVFLA-RTLG---INQLIVAIN 147 (425)
T ss_pred eEEEEEECCCcccc----------hhhHhhch--hcCCEEEEEEEcccCCCCCcchHHHHHHH-HHcC---CCeEEEEEE
Confidence 99999999997321 11111112 358999999887642 2223334444433 3333 256899999
Q ss_pred ccCCC
Q 000824 761 HAASA 765 (1266)
Q Consensus 761 KaDeL 765 (1266)
|+|..
T Consensus 148 K~Dl~ 152 (425)
T PRK12317 148 KMDAV 152 (425)
T ss_pred ccccc
Confidence 99975
No 131
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.71 E-value=2e-07 Score=95.71 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=68.1
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeE-EEEEEEEECCE--EEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKK-VQDVVGTVQGI--KVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre-~qei~geI~Gi--pVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
++|+|+|.+|||||||+|++++.. +..+.+..+... .......+.+. .+.++||||.... ..+. ..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~---~~ 69 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERY-------EAMS---RI 69 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-cCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhh-------hhhh---Hh
Confidence 479999999999999999999864 333233333222 22223345554 4569999997321 1111 11
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
++ ...|+++||.+++...........++.+... ....++++|.||+|...
T Consensus 70 ~~--~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 70 YY--RGAKAAIVCYDLTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIE 119 (193)
T ss_pred hc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEcccccc
Confidence 22 3589999998775321100111233333332 22478999999999753
No 132
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.71 E-value=8.4e-08 Score=95.33 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=66.4
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhc
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKK 715 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~ 715 (1266)
+|+|+|+.|+||||++|+|........ .+ |.........+.++.+.++||||...- ..+ ...++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~---~~~~~-- 64 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT--IP--TIGFNVETVTYKNLKFQVWDLGGQTSI-------RPY---WRCYY-- 64 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc--CC--ccCcCeEEEEECCEEEEEEECCCCHHH-------HHH---HHHHh--
Confidence 589999999999999999976543221 11 211111223456789999999998421 111 12233
Q ss_pred CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCC--CCCccEEEEEeccCCC
Q 000824 716 TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGP--SIWFNAIVVLTHAASA 765 (1266)
Q Consensus 716 ~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~--ei~k~tIVVLTKaDeL 765 (1266)
..+++++||++++.... . ....+.+...+.. ....++++|+||+|..
T Consensus 65 ~~~~~ii~v~d~~~~~~-~--~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 65 SNTDAIIYVVDSTDRDR-L--GTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred cCCCEEEEEEECCCHHH-H--HHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 35899999987764211 0 0112223222221 1247999999999974
No 133
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.71 E-value=3.5e-08 Score=115.62 Aligned_cols=171 Identities=15% Similarity=0.158 Sum_probs=100.1
Q ss_pred chhHHHHHHHHHcchhHHHHhhhcCCCCC-------cchhHHH-HHHHHHHHhCC---CC-----CCCccEEEEEccCCC
Q 000824 582 PHNVVVAQVLYRLGLAEQLRGRNGGRVGA-------FSFDRAS-AMAEQLEAAGQ---EP-----LDFSCTIMVLGKTGV 645 (1266)
Q Consensus 582 Pe~~~laQvLyrLgLaE~Li~~~~~rL~~-------fs~d~a~-~LaeqLe~~~~---e~-----lk~slrILLVGpTGV 645 (1266)
+....+...|.+.++...++..+...+.. .....++ .+.+.|...-. .. ...+..|+|+|++||
T Consensus 155 ~~~~~L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptGv 234 (432)
T PRK12724 155 SPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQGRNHNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGS 234 (432)
T ss_pred hHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhcccchhhhhhcccCCCeEEEEECCCCC
Confidence 33445778899999988877766554321 1112222 23333332211 11 113457999999999
Q ss_pred CHHHHHHHHhcCc-------c--ccccCcccceeEEEEEEEEE--------------------CCEEEEEEeCCCCCCCc
Q 000824 646 GKSATINSIFDEV-------K--FGTDAFQMGTKKVQDVVGTV--------------------QGIKVRVIDTPGLLPSW 696 (1266)
Q Consensus 646 GKSTLINSLLGr~-------v--ftvda~rstTre~qei~geI--------------------~GipVtVIDTPGL~DS~ 696 (1266)
||||++..|+... + +..|.+++.+..++..++.. .+..++||||||+...
T Consensus 235 GKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~VLIDTaGr~~r- 313 (432)
T PRK12724 235 GKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELILIDTAGYSHR- 313 (432)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEEEEeCCCCCcc-
Confidence 9999999998631 1 33455665543322221111 2567899999999642
Q ss_pred cchhchHHHHHHHHHhhhcC---CCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 697 SDQRQNEKILHSVKRFIKKT---PPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 697 gd~~~neeIlkeIKkfLk~~---~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+...+.++.+++... .++.++||++++... ..+..+.+.|.. ....-+||||.|...
T Consensus 314 -----d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~------~~~~~~~~~f~~--~~~~glIlTKLDEt~ 373 (432)
T PRK12724 314 -----NLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY------HHTLTVLKAYES--LNYRRILLTKLDEAD 373 (432)
T ss_pred -----CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH------HHHHHHHHHhcC--CCCCEEEEEcccCCC
Confidence 234455555555432 355677887776432 225555666632 456778999999864
No 134
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.71 E-value=7.5e-08 Score=89.64 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=65.5
Q ss_pred EEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE--CCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcC
Q 000824 639 VLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV--QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKT 716 (1266)
Q Consensus 639 LVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI--~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~ 716 (1266)
|+|++|+|||||+|+|++...... ....+........... .+..++++||||..... ... ..+ ..
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~----~~~--~~ 67 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE-EYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR------SLR----RLY--YR 67 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc-ccccchhheeeEEEEECCEEEEEEEEecCChHHHH------hHH----HHH--hc
Confidence 589999999999999999765311 1111112222222222 25789999999985321 111 112 23
Q ss_pred CCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCC
Q 000824 717 PPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPP 767 (1266)
Q Consensus 717 ~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~P 767 (1266)
..|+++||++++.. ....+...+..+..........++++|+||+|...+
T Consensus 68 ~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 68 GADGIILVYDVTDR-ESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred CCCEEEEEEECcCH-HHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 58899999877642 111111111011111223456899999999997653
No 135
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.71 E-value=1.8e-07 Score=93.83 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=66.3
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+|+|.+|||||||++.+++........ .............+.+ +.+.++||||... .......+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~ 69 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQL-STYALTLYKHNAKFEGKTILVDFWDTAGQER----------FQTMHASY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcC-CceeeEEEEEEEEECCEEEEEEEEeCCCchh----------hhhhhHHH
Confidence 479999999999999999998753221111 1111122222233343 5678999999631 11112223
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAAS 764 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDe 764 (1266)
++ ..|++|+|.+++.. .+..+ ...+..+.+.. ...++++|.||+|.
T Consensus 70 ~~--~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl 116 (161)
T cd04124 70 YH--KAHACILVFDVTRK-ITYKNLSKWYEELREYR---PEIPCIVVANKIDL 116 (161)
T ss_pred hC--CCCEEEEEEECCCH-HHHHHHHHHHHHHHHhC---CCCcEEEEEECccC
Confidence 33 57999999877532 11111 23344444332 24799999999996
No 136
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.71 E-value=1.1e-07 Score=93.45 Aligned_cols=117 Identities=13% Similarity=0.135 Sum_probs=66.9
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+++|++|||||||+|+++..... ..+.+++.........+.+ +.+.++||||.... .. ....+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~---~~~~~ 68 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY-------AA---IRDNY 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCChhhh-------hH---HHHHH
Confidence 47999999999999999999975322 1223333222222223443 56899999997421 11 11223
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
++ ..+++++|..++....-..-...+..+..... ....++++|+||+|...
T Consensus 69 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 69 HR--SGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred hh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 32 46778888666532100011223333333211 23589999999999754
No 137
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.70 E-value=1.5e-07 Score=95.98 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=69.1
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
..+|+++|++|+||||++|.|++....... .|.........+.+..+.++||||... .......++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~ 80 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTS----PTIGSNVEEIVYKNIRFLMWDIGGQES----------LRSSWNTYY 80 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcC----CccccceEEEEECCeEEEEEECCCCHH----------HHHHHHHHh
Confidence 468999999999999999999875433221 121112223445688999999999831 111112233
Q ss_pred hcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCC--CCccEEEEEeccCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPS--IWFNAIVVLTHAASA 765 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~e--i~k~tIVVLTKaDeL 765 (1266)
..+|+++||++.+... . -....+.+.+.+... ...+++||+||+|..
T Consensus 81 --~~~d~vi~V~D~s~~~-~--~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 81 --TNTDAVILVIDSTDRE-R--LPLTKEELYKMLAHEDLRKAVLLVLANKQDLK 129 (174)
T ss_pred --hcCCEEEEEEECCCHH-H--HHHHHHHHHHHHhchhhcCCCEEEEEECCCCC
Confidence 2589999998776421 1 111122333333221 247899999999964
No 138
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.70 E-value=5e-07 Score=113.14 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=78.3
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
..++.+|+|+|..++|||||+++|.+..+. ...+++.|.....+...+.+..|+|+||||..+- ..++ .
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F-------~~m~---~ 355 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAF-------TAMR---A 355 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccc-------hhHH---H
Confidence 345789999999999999999999876443 3334555666555666778899999999997431 1111 1
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
... ...|++|||++++.. ........+..+.. ...++||++||+|..
T Consensus 356 rga--~~aDiaILVVdAddG-v~~qT~e~i~~a~~-----~~vPiIVviNKiDl~ 402 (787)
T PRK05306 356 RGA--QVTDIVVLVVAADDG-VMPQTIEAINHAKA-----AGVPIIVAINKIDKP 402 (787)
T ss_pred hhh--hhCCEEEEEEECCCC-CCHhHHHHHHHHHh-----cCCcEEEEEECcccc
Confidence 122 347999999887643 22233334433322 246899999999974
No 139
>CHL00071 tufA elongation factor Tu
Probab=98.70 E-value=1.2e-07 Score=110.52 Aligned_cols=118 Identities=14% Similarity=0.046 Sum_probs=78.6
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCcccc----------cc-----CcccceeEEEEEEEEECCEEEEEEeCCCCCCCc
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFG----------TD-----AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSW 696 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~vft----------vd-----a~rstTre~qei~geI~GipVtVIDTPGL~DS~ 696 (1266)
+..++|+++|.+++|||||+|+|++..... .+ ..++.|.+.........+..++||||||..
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~--- 86 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA--- 86 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH---
Confidence 456899999999999999999999752211 01 125556665555556678899999999962
Q ss_pred cchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 697 SDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 697 gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
..+..+...+. .+|++++|+++.. .....+.+.+..+.. +| .+++|+++||+|...
T Consensus 87 -------~~~~~~~~~~~--~~D~~ilVvda~~-g~~~qt~~~~~~~~~-~g---~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 87 -------DYVKNMITGAA--QMDGAILVVSAAD-GPMPQTKEHILLAKQ-VG---VPNIVVFLNKEDQVD 142 (409)
T ss_pred -------HHHHHHHHHHH--hCCEEEEEEECCC-CCcHHHHHHHHHHHH-cC---CCEEEEEEEccCCCC
Confidence 23333333332 5899999988763 243345555655443 33 244788999999863
No 140
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.70 E-value=1.3e-07 Score=103.61 Aligned_cols=112 Identities=14% Similarity=0.191 Sum_probs=69.9
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccc--c---------C------cccceeEEEEEEEEECCEEEEEEeCCCCCCCccc
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGT--D---------A------FQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSD 698 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftv--d---------a------~rstTre~qei~geI~GipVtVIDTPGL~DS~gd 698 (1266)
+|+|+|++|+|||||+|+|+.....+. . . .+..|.........+.+..+.||||||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence 589999999999999999986421110 0 0 012233333445567889999999999842
Q ss_pred hhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 699 QRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 699 ~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
....+..++. .+|++++|++++.. .......+++.+.. ...+.++++||+|..
T Consensus 77 ------f~~~~~~~l~--~aD~~i~Vvd~~~g-~~~~~~~~~~~~~~-----~~~p~iivvNK~D~~ 129 (268)
T cd04170 77 ------FVGETRAALR--AADAALVVVSAQSG-VEVGTEKLWEFADE-----AGIPRIIFINKMDRE 129 (268)
T ss_pred ------HHHHHHHHHH--HCCEEEEEEeCCCC-CCHHHHHHHHHHHH-----cCCCEEEEEECCccC
Confidence 1122233333 47899999877642 22222334443322 246899999999965
No 141
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.70 E-value=2e-08 Score=95.05 Aligned_cols=115 Identities=20% Similarity=0.170 Sum_probs=64.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcCcccc---ccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFG---TDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vft---vda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
+|+|+|+.||||||||++|++..... .......+..............+.+.|++|.... ....... +
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~---~~~~~~~---~--- 71 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEF---YSQHQFF---L--- 71 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCH---HCTSHHH---H---
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcccee---cccccch---h---
Confidence 69999999999999999999876541 1112222222111111112234889999998321 0111111 1
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAA 763 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaD 763 (1266)
...|++++|.+++... +... ..++++|...-+.....+++||.||.|
T Consensus 72 ---~~~d~~ilv~D~s~~~-s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 72 ---KKADAVILVYDLSDPE-SLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp ---HHSCEEEEEEECCGHH-HHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ---hcCcEEEEEEcCCChH-HHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 2378999998776421 1122 234445555433233489999999998
No 142
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.69 E-value=1.6e-07 Score=93.53 Aligned_cols=115 Identities=19% Similarity=0.251 Sum_probs=68.0
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+|+|.+||||||++|+++... + ...+.+++.........+.+ +.+.++||||...- ..+.. .+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~---~~ 69 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI-F-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF-------TAMRD---LY 69 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC-C-CcccCCcchheEEEEEEECCEEEEEEEEECCCcccc-------hhHHH---HH
Confidence 589999999999999999998642 2 12233344332333344554 45679999997321 11111 12
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+ ...|++++|.+++... +..+ ...+..+..... ....+++||.||+|..
T Consensus 70 ~--~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~ 119 (164)
T cd04175 70 M--KNGQGFVLVYSITAQS-TFNDLQDLREQILRVKD-TEDVPMILVGNKCDLE 119 (164)
T ss_pred H--hhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcch
Confidence 2 2478888887765321 1111 223344433221 2346899999999975
No 143
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.69 E-value=1e-07 Score=112.06 Aligned_cols=119 Identities=17% Similarity=0.269 Sum_probs=79.9
Q ss_pred ccEEEEEccCCCCHHHHHHHHh------cCcc--ccccCcccceeEEE---------EEEEEE-----------------
Q 000824 634 SCTIMVLGKTGVGKSATINSIF------DEVK--FGTDAFQMGTKKVQ---------DVVGTV----------------- 679 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLL------Gr~v--ftvda~rstTre~q---------ei~geI----------------- 679 (1266)
+..|+|+|++|+|||||+++|+ |..+ +..|+|++++.+++ .++...
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999998 4433 33566765433221 111110
Q ss_pred -CCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEE
Q 000824 680 -QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVV 758 (1266)
Q Consensus 680 -~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVV 758 (1266)
.++.++||||||... .+...+.+++++.....|+.++||+++... .......+.+.+. ....-+|
T Consensus 180 ~~~~DvViIDTaGr~~------~d~~lm~El~~i~~~~~p~e~lLVlda~~G---q~a~~~a~~F~~~-----~~~~g~I 245 (429)
T TIGR01425 180 KENFDIIIVDTSGRHK------QEDSLFEEMLQVAEAIQPDNIIFVMDGSIG---QAAEAQAKAFKDS-----VDVGSVI 245 (429)
T ss_pred hCCCCEEEEECCCCCc------chHHHHHHHHHHhhhcCCcEEEEEeccccC---hhHHHHHHHHHhc-----cCCcEEE
Confidence 256889999999753 346677888887777789999999776532 2233344444433 2457899
Q ss_pred EeccCCCC
Q 000824 759 LTHAASAP 766 (1266)
Q Consensus 759 LTKaDeL~ 766 (1266)
|||.|...
T Consensus 246 lTKlD~~a 253 (429)
T TIGR01425 246 ITKLDGHA 253 (429)
T ss_pred EECccCCC
Confidence 99999865
No 144
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.68 E-value=1.2e-07 Score=95.99 Aligned_cols=111 Identities=12% Similarity=0.123 Sum_probs=69.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhc
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKK 715 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~ 715 (1266)
+|+|+|.+||||||++|++.+.. +. .+. .|...........+..+.|+||||.... .... ..++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~-~~--~~~-~T~~~~~~~~~~~~~~i~l~Dt~G~~~~-------~~~~---~~~~-- 64 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE-FM--QPI-PTIGFNVETVEYKNLKFTIWDVGGKHKL-------RPLW---KHYY-- 64 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC-CC--CcC-CcCceeEEEEEECCEEEEEEECCCChhc-------chHH---HHHh--
Confidence 58999999999999999999863 21 122 2222222334567899999999997431 1111 1222
Q ss_pred CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCC--CCccEEEEEeccCCC
Q 000824 716 TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPS--IWFNAIVVLTHAASA 765 (1266)
Q Consensus 716 ~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~e--i~k~tIVVLTKaDeL 765 (1266)
...|+++||.+++... . -.....++...+... ...+++||.||.|..
T Consensus 65 ~~ad~ii~V~D~s~~~-s--~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 65 LNTQAVVFVVDSSHRD-R--VSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred ccCCEEEEEEeCCcHH-H--HHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 3479999998876431 1 112233444443221 236899999999964
No 145
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.67 E-value=1.6e-07 Score=96.43 Aligned_cols=115 Identities=14% Similarity=0.138 Sum_probs=66.8
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+++|.+|||||||+|.+++..... ...+..+.+.......+.+ +.+.++||||.... .. ....+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~-------~~---~~~~~ 69 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF-------RS---LNNSY 69 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH-------Hh---hHHHH
Confidence 479999999999999999999764321 1111112222222233444 56789999996321 11 11222
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+ ...|+++||.+++... .... ...+..+....+. ..++++|.||+|..
T Consensus 70 ~--~~~d~iilv~d~~~~~-s~~~i~~~~~~i~~~~~~--~~~~ivv~nK~Dl~ 118 (188)
T cd04125 70 Y--RGAHGYLLVYDVTDQE-SFENLKFWINEINRYARE--NVIKVIVANKSDLV 118 (188)
T ss_pred c--cCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCC--CCeEEEEEECCCCc
Confidence 2 3589999998776421 1111 1223333333222 36799999999975
No 146
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.67 E-value=1.4e-07 Score=97.48 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=67.3
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCE--EEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGI--KVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~Gi--pVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
+|+|+|.+|||||||+|.++... |. ..+.+++.........+.+. .+.|+||||...- ..+ ...++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~-f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~---~~~~~ 68 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH-FV-ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY-------TAL---RDQWI 68 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CC-ccCCCchHhhEEEEEEECCEEEEEEEEECCCchhh-------HHH---HHHHH
Confidence 48999999999999999998653 22 12333322222223344554 5889999996321 111 11233
Q ss_pred hcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCC-CCCccEEEEEeccCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGP-SIWFNAIVVLTHAASA 765 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~-ei~k~tIVVLTKaDeL 765 (1266)
+ ..|++|+|.+++.. .+... ...+..+...... ....++++|.||+|..
T Consensus 69 ~--~ad~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 69 R--EGEGFILVYSITSR-STFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred H--hCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 2 47899999877542 11111 2334444443321 1346899999999975
No 147
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.67 E-value=2.9e-07 Score=92.23 Aligned_cols=115 Identities=15% Similarity=0.211 Sum_probs=67.0
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccce-eEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGT-KKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstT-re~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
++|+++|..||||||+++++++.. +.. .+..++ .+.......+.+ +.+.++||||... .......
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~-~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 70 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK-FMA-DCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER----------FRAVTRS 70 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCC-CCCcccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHHH
Confidence 589999999999999999999763 222 122221 222222233444 4678999999621 1111223
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
++ ...|++++|.+++... +... ...+..+..... ...++++|.||+|...
T Consensus 71 ~~--~~~~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 71 YY--RGAAGALMVYDITRRS-TYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEA 121 (166)
T ss_pred Hh--cCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 33 3589999998776421 1111 122222222211 2468999999999753
No 148
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.67 E-value=1.1e-07 Score=94.31 Aligned_cols=116 Identities=18% Similarity=0.144 Sum_probs=68.4
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCE--EEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGI--KVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~Gi--pVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+|+|.+||||||+++.++...... .+.++..........+.+. .+.|+||||...- ..+.. .+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~---~~ 69 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF-------ASMRD---LY 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCcccc-------cchHH---HH
Confidence 589999999999999999999764322 2222222222333344553 5778999996321 11111 12
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+ ...|++++|.+++....-..-...+..+..... ....++++|.||+|..
T Consensus 70 ~--~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~ 119 (163)
T cd04176 70 I--KNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLE 119 (163)
T ss_pred H--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccch
Confidence 2 247889998777643211111233444444322 2357899999999964
No 149
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.67 E-value=1.7e-07 Score=91.33 Aligned_cols=100 Identities=20% Similarity=0.272 Sum_probs=62.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhc
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKK 715 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~ 715 (1266)
+|+|+|++|||||||+|+|++.... +. .|.. ..+.+ .+|||||... ......+.+... .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~-~t~~-----~~~~~---~~iDt~G~~~------~~~~~~~~~~~~--~ 60 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YK-KTQA-----VEYND---GAIDTPGEYV------ENRRLYSALIVT--A 60 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cc-ccee-----EEEcC---eeecCchhhh------hhHHHHHHHHHH--h
Confidence 7999999999999999999987431 11 1211 11222 6899999731 112333333332 2
Q ss_pred CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 716 TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 716 ~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
..+|++++|.+++.... ..... +...++ +++++|+||+|..
T Consensus 61 ~~ad~vilv~d~~~~~s-~~~~~----~~~~~~----~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 61 ADADVIALVQSATDPES-RFPPG----FASIFV----KPVIGLVTKIDLA 101 (142)
T ss_pred hcCCEEEEEecCCCCCc-CCChh----HHHhcc----CCeEEEEEeeccC
Confidence 46899999988764432 22222 222222 4899999999975
No 150
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.65 E-value=1.9e-07 Score=93.86 Aligned_cols=112 Identities=18% Similarity=0.219 Sum_probs=66.4
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE--CCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV--QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI--~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
+|+|+|.+|||||||+|.+++..... .++.+... ......+ ..+.+.++||||.... ... +..++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~----~~~~~ 68 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPE--NVPRVLPE-ITIPADVTPERVPTTIVDTSSRPQD------RAN----LAAEI 68 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--cCCCcccc-eEeeeeecCCeEEEEEEeCCCchhh------hHH----Hhhhc
Confidence 79999999999999999999864321 12221111 1122222 3467899999998432 111 12223
Q ss_pred hcCCCCEEEEEeecCCCCCCCCc--HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSD--MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD--~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
...|++++|.+++.. .+... ...+..+... .. ..++++|.||+|...
T Consensus 69 --~~ad~~ilv~d~~~~-~s~~~~~~~~~~~i~~~-~~--~~pviiv~nK~Dl~~ 117 (166)
T cd01893 69 --RKANVICLVYSVDRP-STLERIRTKWLPLIRRL-GV--KVPIILVGNKSDLRD 117 (166)
T ss_pred --ccCCEEEEEEECCCH-HHHHHHHHHHHHHHHHh-CC--CCCEEEEEEchhccc
Confidence 358899999776532 11111 1123333332 22 578999999999854
No 151
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.65 E-value=3.5e-07 Score=92.41 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=66.5
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE------------CCEEEEEEeCCCCCCCccchhc
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV------------QGIKVRVIDTPGLLPSWSDQRQ 701 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI------------~GipVtVIDTPGL~DS~gd~~~ 701 (1266)
.++|+++|+.|||||||+|.+++... .....+..+.+.......+ ..+.+.|+||||-.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------- 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF-NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE-------- 74 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH--------
Confidence 37899999999999999999987532 2111111111221111111 23678999999952
Q ss_pred hHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 702 NEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 702 neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
........++ ...|++++|.+++.. .+..+ ...+..+.... .....++++|.||+|...
T Consensus 75 --~~~~~~~~~~--~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 75 --RFRSLTTAFF--RDAMGFLLIFDLTNE-QSFLNVRNWMSQLQTHA-YCENPDIVLCGNKADLED 134 (180)
T ss_pred --HHHHHHHHHh--CCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhc-CCCCCcEEEEEeCccchh
Confidence 1111122233 358999999877632 11111 12233333221 112467999999999753
No 152
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.65 E-value=3.9e-07 Score=92.88 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=69.2
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
.++|+++|.+||||||++++|....... ..+...... .......+.+.++||||... ...+. ..++
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~--~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~~-------~~~~~---~~~~ 74 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT--TIPTVGFNV--ETVTYKNVKFNVWDVGGQDK-------IRPLW---RHYY 74 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc--ccCCcccce--EEEEECCEEEEEEECCCCHH-------HHHHH---HHHh
Confidence 5799999999999999999998643221 111111122 22334678999999999831 11111 2222
Q ss_pred hcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCC--CCccEEEEEeccCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPS--IWFNAIVVLTHAASA 765 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~e--i~k~tIVVLTKaDeL 765 (1266)
..+|+++||.+++... . -....+.+.+.+... ...+++||.||+|..
T Consensus 75 --~~a~~ii~v~D~t~~~-s--~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 75 --TGTQGLIFVVDSADRD-R--IDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred --ccCCEEEEEEeCCchh-h--HHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 3589999998876431 1 112234444443321 246899999999964
No 153
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.65 E-value=4.5e-07 Score=90.81 Aligned_cols=119 Identities=18% Similarity=0.129 Sum_probs=67.8
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
.++|+++|.+|||||||++.+++... .....+..+.+.......+.+ +.+.++||||-.. .......
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~ 73 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER----------FRSLRTP 73 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC-CcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHH----------HHHhHHH
Confidence 36999999999999999999997532 222222222222222334444 4567899999621 1111122
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCC--CCCccEEEEEeccCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGP--SIWFNAIVVLTHAASA 765 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~--ei~k~tIVVLTKaDeL 765 (1266)
++ ...|++++|.+++.......-...+..+...... ....++++|.||+|..
T Consensus 74 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 74 FY--RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred Hh--cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 33 2578888887776431111111233333333321 1246899999999964
No 154
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.65 E-value=1.6e-07 Score=93.76 Aligned_cols=116 Identities=23% Similarity=0.302 Sum_probs=67.3
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCE--EEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGI--KVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~Gi--pVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
+|+|+|.+|||||||+++++... + .+.+.+++.........+.+. .+.|+||||..... .... ..++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----~~~~----~~~~ 69 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR-F-IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD-----TEQL----ERSI 69 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc-c-ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc-----cchH----HHHH
Confidence 48999999999999999998743 2 223333332222223344554 57899999985310 0111 1222
Q ss_pred hcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+ .+|++++|.+++.. .+... ...+..+..........++++|.||+|..
T Consensus 70 ~--~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 70 R--WADGFVLVYSITDR-SSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred H--hCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 2 47899999877642 11111 12333444322112357899999999964
No 155
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.64 E-value=2e-07 Score=94.42 Aligned_cols=117 Identities=14% Similarity=0.138 Sum_probs=66.5
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
.+|+|+|.+|||||||+|++++.... ..+.+++.........+.+ ..+.++||||..+- ..+. ..+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~---~~~ 69 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEY-------SILP---QKY 69 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--cccCcchhhhEEEEEEECCEEEEEEEEECCChHhh-------HHHH---HHH
Confidence 58999999999999999999976432 2222222211112223333 56789999997321 1111 112
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
. ...+++++|.+.+....-..-...+..+.+.++. ...++|+|.||+|...
T Consensus 70 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 70 S--IGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHT 120 (180)
T ss_pred H--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhh
Confidence 2 2477788886665321111112233444443332 3568999999999753
No 156
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.63 E-value=2.7e-07 Score=100.51 Aligned_cols=112 Identities=20% Similarity=0.136 Sum_probs=71.1
Q ss_pred EEEEEccCCCCHHHHHHHHhcCcccc------------ccC-----cccceeEEEEEEEEECCEEEEEEeCCCCCCCccc
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFG------------TDA-----FQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSD 698 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vft------------vda-----~rstTre~qei~geI~GipVtVIDTPGL~DS~gd 698 (1266)
+|+++|+.|+|||||+++|+.....+ .+. .+..|.........+.+.++.++||||..+-
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f--- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF--- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence 58999999999999999998642211 011 1222333444556778999999999999542
Q ss_pred hhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 699 QRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 699 ~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
...+..+++ ..|++++|++.... .......+++.+.+ . ..+.++++||+|..
T Consensus 78 -------~~~~~~~l~--~aD~~IlVvd~~~g-~~~~~~~~~~~~~~-~----~~P~iivvNK~D~~ 129 (237)
T cd04168 78 -------IAEVERSLS--VLDGAILVISAVEG-VQAQTRILWRLLRK-L----NIPTIIFVNKIDRA 129 (237)
T ss_pred -------HHHHHHHHH--HhCeEEEEEeCCCC-CCHHHHHHHHHHHH-c----CCCEEEEEECcccc
Confidence 112223332 36888899877642 32222334444332 2 46889999999965
No 157
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.61 E-value=1.8e-07 Score=94.76 Aligned_cols=114 Identities=11% Similarity=0.108 Sum_probs=66.6
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE--CCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV--QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI--~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+++|++|||||||+|.++.... .....+....+........ ..+.+.++||||..... .+. ..+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~---~~~ 69 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFG-------GLR---DGY 69 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhc-------ccc---HHH
Confidence 3799999999999999999986432 1111111111222222222 34678999999974311 111 111
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
. ..+|++++|.+++.. .+... ...++.+....+ ..++++|.||+|..
T Consensus 70 ~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~ 117 (166)
T cd00877 70 Y--IGGQCAIIMFDVTSR-VTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIK 117 (166)
T ss_pred h--cCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence 1 358999999877632 11111 123444544432 58899999999974
No 158
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.61 E-value=2.8e-07 Score=96.13 Aligned_cols=115 Identities=18% Similarity=0.252 Sum_probs=69.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
+|+|+|..|||||||++.+++.... ..+..++.........+.+ +.+.++||||.... ..+.. .+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~---~~- 67 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSF-------PAMRK---LS- 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhh-------hHHHH---HH-
Confidence 4899999999999999999986422 1233333222233344556 67889999997421 11111 12
Q ss_pred hcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
....|+++||++++.. .+..+ ...+..+.+... ....++|||.||+|...
T Consensus 68 -~~~ad~vilv~d~~~~-~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 68 -IQNSDAFALVYAVDDP-ESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLE 118 (198)
T ss_pred -hhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccc
Confidence 2358999999876532 11111 122333443322 23578999999999754
No 159
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.61 E-value=5.1e-07 Score=92.16 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=65.8
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccc-eeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMG-TKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rst-Tre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
+|+++|.+|||||||+|.+++.. |.. .+.++ ..+.......+.| +.+.|+||||...- ..+. ..+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~-f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~---~~~ 69 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV-FDK-NYKATIGVDFEMERFEILGVPFSLQLWDTAGQERF-------KCIA---STY 69 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCC-CCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHH-------HhhH---HHH
Confidence 69999999999999999999863 322 22222 2233223334444 56899999997310 1111 122
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+ ...|++++|.+++...........++.+.+.... ...++++|.||+|..
T Consensus 70 ~--~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~ 119 (170)
T cd04108 70 Y--RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP-SSVLLFLVGTKKDLS 119 (170)
T ss_pred h--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEChhcC
Confidence 2 3689999998775321110111223333222111 124689999999964
No 160
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.61 E-value=2.3e-07 Score=93.25 Aligned_cols=117 Identities=20% Similarity=0.182 Sum_probs=67.5
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+|+|.+||||||++|++++.... ..+.+++.........+.+ +++.++||||...- ..+. ..+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~---~~~ 69 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF-------TAMR---ELY 69 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCcccc-------hhhh---HHH
Confidence 58999999999999999999976432 2222222222222223343 57889999997431 1111 112
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
++ ..+.+++|.+++....-.........+...+. ....++++|.||.|...
T Consensus 70 ~~--~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 70 IK--SGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLED 120 (168)
T ss_pred Hh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhccc
Confidence 22 36788888766532111111223344444332 23578999999999753
No 161
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.60 E-value=5.8e-07 Score=93.04 Aligned_cols=113 Identities=9% Similarity=0.071 Sum_probs=68.5
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
.++|+|+|+.||||||+++.+....... +.+ |...........++.+.|+||||... ...+ ...++
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~---~~~-T~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~---~~~~~ 82 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT---TIP-TIGFNVETVEYKNLKFTMWDVGGQDK-------LRPL---WRHYY 82 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---cCC-ccccceEEEEECCEEEEEEECCCCHh-------HHHH---HHHHh
Confidence 5799999999999999999997542221 112 22222223345788999999999731 1111 12233
Q ss_pred hcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCC--CCccEEEEEeccCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPS--IWFNAIVVLTHAASA 765 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~e--i~k~tIVVLTKaDeL 765 (1266)
...|++|||.+++.... .. ...+.+.+.+... ...+++||.||.|..
T Consensus 83 --~~ad~iI~v~D~t~~~s-~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 83 --QNTNGLIFVVDSNDRER-IG--DAREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred --cCCCEEEEEEeCCCHHH-HH--HHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 35899999988764211 11 1223333333321 236899999999963
No 162
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.60 E-value=4.7e-07 Score=95.51 Aligned_cols=116 Identities=17% Similarity=0.111 Sum_probs=67.3
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCcc-ccc-cCcccceeEEEEEEEEE---------------------------CC----
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVK-FGT-DAFQMGTKKVQDVVGTV---------------------------QG---- 681 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~v-ftv-da~rstTre~qei~geI---------------------------~G---- 681 (1266)
++|+++|+.|+|||||+.+|.+... ... ...++.|..+......+ .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999987521 100 00111111111111111 03
Q ss_pred --EEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEE
Q 000824 682 --IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVL 759 (1266)
Q Consensus 682 --ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVL 759 (1266)
..+.||||||. +.+...+...+ ..+|++++|++++...........+..+.. .+ ..+++||+
T Consensus 81 ~~~~i~~iDtPG~----------~~~~~~~~~~~--~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~---~~~iiivv 144 (203)
T cd01888 81 LVRHVSFVDCPGH----------EILMATMLSGA--AVMDGALLLIAANEPCPQPQTSEHLAALEI-MG---LKHIIIVQ 144 (203)
T ss_pred cccEEEEEECCCh----------HHHHHHHHHhh--hcCCEEEEEEECCCCCCCcchHHHHHHHHH-cC---CCcEEEEE
Confidence 78999999995 22333333333 258999999887743223233444544422 22 25789999
Q ss_pred eccCCCC
Q 000824 760 THAASAP 766 (1266)
Q Consensus 760 TKaDeL~ 766 (1266)
||+|...
T Consensus 145 NK~Dl~~ 151 (203)
T cd01888 145 NKIDLVK 151 (203)
T ss_pred EchhccC
Confidence 9999753
No 163
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.60 E-value=1.2e-07 Score=98.91 Aligned_cols=59 Identities=36% Similarity=0.415 Sum_probs=50.2
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCC
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGL 692 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL 692 (1266)
.....+|+|+|.+||||||+||+|++...+.++..+++|+..+.+.. +..+.++||||+
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 34457999999999999999999999998899889999987666542 357899999996
No 164
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.60 E-value=5e-07 Score=94.24 Aligned_cols=116 Identities=9% Similarity=0.113 Sum_probs=67.1
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccc-eeEEEEEEEEEC---CEEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMG-TKKVQDVVGTVQ---GIKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rst-Tre~qei~geI~---GipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
++|+|+|..|||||||+|.+++.... . .+.++ ..+.......+. .+.+.++||||...- ..+ ..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~-~-~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~-------~~~---~~ 68 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFS-Q-HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF-------GGM---TR 68 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-C-CCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhh-------hhh---HH
Confidence 47999999999999999999986321 1 12222 112222222333 367899999997311 111 12
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCcH-HHHHHHHHHhC--CCCCccEEEEEeccCCC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSDM-PLLRTITDIFG--PSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD~-elLK~I~eiFG--~ei~k~tIVVLTKaDeL 765 (1266)
.++ ...|++++|.+++... +.... ..+..+...+. .....+++||.||+|..
T Consensus 69 ~~~--~~a~~~ilv~D~t~~~-s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 69 VYY--RGAVGAIIVFDVTRPS-TFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred HHh--CCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 233 3589999998775321 11111 12233333221 12356899999999975
No 165
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.60 E-value=5.6e-07 Score=99.78 Aligned_cols=113 Identities=10% Similarity=0.039 Sum_probs=70.3
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccc---------------cCc------ccceeEEEEEEEEECCEEEEEEeCCCCC
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGT---------------DAF------QMGTKKVQDVVGTVQGIKVRVIDTPGLL 693 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftv---------------da~------rstTre~qei~geI~GipVtVIDTPGL~ 693 (1266)
.+|+|+|..|+|||||+|+|+.....+. ..+ ++.+.........+.+.++.+|||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 5899999999999999999985321111 111 1223333445667889999999999984
Q ss_pred CCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 694 PSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 694 DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+- ......+++ ..|++++|++++.. .......+++.+. . ...++++++||+|..
T Consensus 83 df----------~~~~~~~l~--~aD~~IlVvda~~g-~~~~~~~i~~~~~-~----~~~P~iivvNK~D~~ 136 (267)
T cd04169 83 DF----------SEDTYRTLT--AVDSAVMVIDAAKG-VEPQTRKLFEVCR-L----RGIPIITFINKLDRE 136 (267)
T ss_pred HH----------HHHHHHHHH--HCCEEEEEEECCCC-ccHHHHHHHHHHH-h----cCCCEEEEEECCccC
Confidence 31 111222332 47999999887632 2222223333222 1 246799999999964
No 166
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.59 E-value=5.2e-07 Score=94.32 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=66.7
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
.++|+|+|++|||||||++.+++..... ...+....+.......+.+ +.+.|+||||-..- ..+ ...
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~---~~~ 74 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGERVKLQIWDTAGQERF-------RTI---TST 74 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCccccceeEEEEEEECCEEEEEEEEeCCCchhH-------HHH---HHH
Confidence 4799999999999999999999864321 1111111122222333444 56889999996210 111 122
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
++ ...+++++|.+++.. ....+ ...+..+.... ...+++||.||+|...
T Consensus 75 ~~--~~a~~iilv~D~~~~-~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~ 124 (199)
T cd04110 75 YY--RGTHGVIVVYDVTNG-ESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPE 124 (199)
T ss_pred Hh--CCCcEEEEEEECCCH-HHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence 33 347889999777532 11111 12233333322 2468899999999753
No 167
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.58 E-value=3.5e-07 Score=96.89 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=67.1
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEE--ECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGT--VQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~ge--I~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
+|+|+|++|+|||||++.|.......+ +.+++......... ..+..+.|+||||... +...+..++
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~----------~~~~~~~~~ 69 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPK----------LRDKLLETL 69 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHH----------HHHHHHHHH
Confidence 699999999999999999998643222 22222111111111 1367899999999732 112223333
Q ss_pred hcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhC----CCCCccEEEEEeccCCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFG----PSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG----~ei~k~tIVVLTKaDeL~ 766 (1266)
+.. +++++||+++...... -..+...+..++- .....+++||.||+|...
T Consensus 70 ~~~-~~~vV~VvD~~~~~~~--~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 70 KNS-AKGIVFVVDSATFQKN--LKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred hcc-CCEEEEEEECccchhH--HHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 322 4889999877643111 1122222222221 113579999999999764
No 168
>PLN03127 Elongation factor Tu; Provisional
Probab=98.58 E-value=4.2e-07 Score=107.61 Aligned_cols=119 Identities=13% Similarity=0.013 Sum_probs=79.4
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcC------ccc----ccc-----CcccceeEEEEEEEEECCEEEEEEeCCCCCCC
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDE------VKF----GTD-----AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPS 695 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr------~vf----tvd-----a~rstTre~qei~geI~GipVtVIDTPGL~DS 695 (1266)
.+..++|+++|..++|||||+++|++. ... ..| ..++.|.+......+..+.+++||||||..+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~- 136 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD- 136 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc-
Confidence 345689999999999999999999742 111 111 1266677766666666788999999999842
Q ss_pred ccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 696 WSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 696 ~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
++..+...+ ..+|++++|++++. .....+.+.+..+.. +| ..++|+++||+|...
T Consensus 137 ---------f~~~~~~g~--~~aD~allVVda~~-g~~~qt~e~l~~~~~-~g---ip~iIvviNKiDlv~ 191 (447)
T PLN03127 137 ---------YVKNMITGA--AQMDGGILVVSAPD-GPMPQTKEHILLARQ-VG---VPSLVVFLNKVDVVD 191 (447)
T ss_pred ---------hHHHHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHH-cC---CCeEEEEEEeeccCC
Confidence 223332222 24899999988764 234445556665543 33 234678999999763
No 169
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.58 E-value=1e-06 Score=105.06 Aligned_cols=118 Identities=16% Similarity=0.064 Sum_probs=76.0
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCcccccc---------------------------C-----cccceeEEEEEEEEE
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFGTD---------------------------A-----FQMGTKKVQDVVGTV 679 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~vftvd---------------------------a-----~rstTre~qei~geI 679 (1266)
+..++|+++|..++|||||++.|+........ . -++.|.+....+..+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 44689999999999999999999865321110 0 123445555555667
Q ss_pred CCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEE
Q 000824 680 QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVL 759 (1266)
Q Consensus 680 ~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVL 759 (1266)
.+..++||||||.. .+.+.+...+ ..+|++|+|++++.. ....+.+.+. +...++ .+++||++
T Consensus 105 ~~~~i~~iDTPGh~----------~f~~~~~~~l--~~aD~allVVDa~~G-~~~qt~~~~~-l~~~lg---~~~iIvvv 167 (474)
T PRK05124 105 EKRKFIIADTPGHE----------QYTRNMATGA--STCDLAILLIDARKG-VLDQTRRHSF-IATLLG---IKHLVVAV 167 (474)
T ss_pred CCcEEEEEECCCcH----------HHHHHHHHHH--hhCCEEEEEEECCCC-ccccchHHHH-HHHHhC---CCceEEEE
Confidence 78899999999952 2222222222 468999999887642 3323333333 333444 35789999
Q ss_pred eccCCCC
Q 000824 760 THAASAP 766 (1266)
Q Consensus 760 TKaDeL~ 766 (1266)
||+|...
T Consensus 168 NKiD~~~ 174 (474)
T PRK05124 168 NKMDLVD 174 (474)
T ss_pred Eeecccc
Confidence 9999763
No 170
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.58 E-value=3.4e-07 Score=111.72 Aligned_cols=113 Identities=18% Similarity=0.264 Sum_probs=78.6
Q ss_pred ccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCE
Q 000824 641 GKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDI 720 (1266)
Q Consensus 641 GpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDV 720 (1266)
|.+||||||++|+|+|.. +.++.++++|.+.......+.+.++.++||||..+-.. ....+.+. +.++....+|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~-~s~~e~v~---~~~l~~~~aDv 75 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTT-FSLEEEVA---RDYLLNEKPDL 75 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCc-cchHHHHH---HHHHhhcCCCE
Confidence 899999999999999975 46677888898887777778899999999999865321 11122222 33454567899
Q ss_pred EEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 721 VLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 721 VLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+++|++.+. .. .....+..+.+ ...++++|+||+|...
T Consensus 76 vI~VvDat~--le-r~l~l~~ql~~-----~~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 76 VVNVVDASN--LE-RNLYLTLQLLE-----LGIPMILALNLVDEAE 113 (591)
T ss_pred EEEEecCCc--ch-hhHHHHHHHHh-----cCCCEEEEEehhHHHH
Confidence 999977653 21 12222233322 2579999999999753
No 171
>PRK09866 hypothetical protein; Provisional
Probab=98.58 E-value=8.3e-07 Score=108.05 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=47.9
Q ss_pred EEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEec
Q 000824 682 IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTH 761 (1266)
Q Consensus 682 ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTK 761 (1266)
..++||||||+..+. ....++.+.+ .+ ...|+||||++++. .....|..+++.|.+. +. ..++++|+||
T Consensus 230 ~QIIFVDTPGIhk~~-~~~L~k~M~e----qL--~eADvVLFVVDat~-~~s~~DeeIlk~Lkk~-~K--~~PVILVVNK 298 (741)
T PRK09866 230 GQLTLLDTPGPNEAG-QPHLQKMLNQ----QL--ARASAVLAVLDYTQ-LKSISDEEVREAILAV-GQ--SVPLYVLVNK 298 (741)
T ss_pred CCEEEEECCCCCCcc-chHHHHHHHH----HH--hhCCEEEEEEeCCC-CCChhHHHHHHHHHhc-CC--CCCEEEEEEc
Confidence 457899999997542 1111223333 33 35899999988753 2455677777777653 21 2489999999
Q ss_pred cCCCC
Q 000824 762 AASAP 766 (1266)
Q Consensus 762 aDeL~ 766 (1266)
+|...
T Consensus 299 IDl~d 303 (741)
T PRK09866 299 FDQQD 303 (741)
T ss_pred ccCCC
Confidence 99853
No 172
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.58 E-value=1.1e-07 Score=105.90 Aligned_cols=120 Identities=22% Similarity=0.321 Sum_probs=74.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcC------cc--ccccCcccceeEE---------EEEEE------------------
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDE------VK--FGTDAFQMGTKKV---------QDVVG------------------ 677 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr------~v--ftvda~rstTre~---------qei~g------------------ 677 (1266)
....|+|+|++|+|||||+.+|+.. .+ +..|.++....++ ..+..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999852 22 2335554432111 01110
Q ss_pred EECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCC------CCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCC
Q 000824 678 TVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTP------PDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSI 751 (1266)
Q Consensus 678 eI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~------pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei 751 (1266)
...++.++||||||... .+...+.+++++..... +|.+++|++++.. ..+......+.+.+
T Consensus 151 ~~~~~D~ViIDT~G~~~------~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~---~~~~~~~~~f~~~~---- 217 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQ------NKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG---QNALEQAKVFNEAV---- 217 (272)
T ss_pred HHCCCCEEEEeCCCCCc------chHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC---HHHHHHHHHHHhhC----
Confidence 01457889999999964 24566666666654444 8889999887632 22222233333322
Q ss_pred CccEEEEEeccCCCC
Q 000824 752 WFNAIVVLTHAASAP 766 (1266)
Q Consensus 752 ~k~tIVVLTKaDeL~ 766 (1266)
...-+||||.|...
T Consensus 218 -~~~g~IlTKlDe~~ 231 (272)
T TIGR00064 218 -GLTGIILTKLDGTA 231 (272)
T ss_pred -CCCEEEEEccCCCC
Confidence 34679999999865
No 173
>PRK12735 elongation factor Tu; Reviewed
Probab=98.57 E-value=5.9e-07 Score=104.45 Aligned_cols=119 Identities=12% Similarity=0.002 Sum_probs=76.7
Q ss_pred CCCCccEEEEEccCCCCHHHHHHHHhcC------ccc----ccc-----CcccceeEEEEEEEEECCEEEEEEeCCCCCC
Q 000824 630 PLDFSCTIMVLGKTGVGKSATINSIFDE------VKF----GTD-----AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLP 694 (1266)
Q Consensus 630 ~lk~slrILLVGpTGVGKSTLINSLLGr------~vf----tvd-----a~rstTre~qei~geI~GipVtVIDTPGL~D 694 (1266)
..+..++|+++|..++|||||+|+|++. ..+ ..+ ..++.|.++........+..++||||||..
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~- 86 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA- 86 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH-
Confidence 3456789999999999999999999962 111 111 135566666555555677889999999972
Q ss_pred CccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 695 SWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 695 S~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
.++..+...+ ..+|++++|+++... ......+.+..+. .+| ..++++++||+|..
T Consensus 87 ---------~f~~~~~~~~--~~aD~~llVvda~~g-~~~qt~e~l~~~~-~~g---i~~iivvvNK~Dl~ 141 (396)
T PRK12735 87 ---------DYVKNMITGA--AQMDGAILVVSAADG-PMPQTREHILLAR-QVG---VPYIVVFLNKCDMV 141 (396)
T ss_pred ---------HHHHHHHhhh--ccCCEEEEEEECCCC-CchhHHHHHHHHH-HcC---CCeEEEEEEecCCc
Confidence 2333333322 358999999887642 3333444454443 233 23355689999975
No 174
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.57 E-value=8.4e-07 Score=90.84 Aligned_cols=113 Identities=11% Similarity=0.036 Sum_probs=68.8
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
.++|+|+|..|||||||++.+.... +. . +.+ |............+.+.++||||... ...+ ...|+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~-~~-~-~~~-t~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~---~~~~~ 78 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGE-SV-T-TIP-TIGFNVETVTYKNISFTVWDVGGQDK-------IRPL---WRHYY 78 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-CC-C-cCC-ccccceEEEEECCEEEEEEECCCChh-------hHHH---HHHHh
Confidence 4799999999999999999996432 21 1 222 22222223345788999999999732 1112 22333
Q ss_pred hcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCC--CCccEEEEEeccCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPS--IWFNAIVVLTHAASA 765 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~e--i~k~tIVVLTKaDeL 765 (1266)
...|+++||.+++... . -....+.+...+... ...+++||.||+|..
T Consensus 79 --~~ad~ii~v~D~t~~~-s--~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 79 --TNTQGLIFVVDSNDRD-R--IDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred --CCCCEEEEEEECCCHH-H--HHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 3589999998876421 1 112233333333221 136899999999963
No 175
>PLN03110 Rab GTPase; Provisional
Probab=98.57 E-value=8.3e-07 Score=94.51 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=70.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
..++|+++|++|||||||++.|++..... ...+....+.......+.+ +.+.|+||||... ......
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~----------~~~~~~ 79 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER----------YRAITS 79 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHH
Confidence 45799999999999999999999864322 1112222232233334444 5788999999621 112223
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
.+++ ..+++|+|.+++... .... ...+..+..... ...++++|.||+|..
T Consensus 80 ~~~~--~~~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 80 AYYR--GAVGALLVYDITKRQ-TFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLN 130 (216)
T ss_pred HHhC--CCCEEEEEEECCChH-HHHHHHHHHHHHHHhCC--CCCeEEEEEEChhcc
Confidence 3333 588899997775321 1111 123333433322 246899999999964
No 176
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.56 E-value=5e-07 Score=96.76 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=67.5
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccce-eEEEEEEEEEC--CEEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGT-KKVQDVVGTVQ--GIKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstT-re~qei~geI~--GipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
++|+|+|.+|||||||++.+++.... ...+.++. .+.......+. ...+.++||||... .+.. .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~----------~~~~--~ 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM----------WTED--S 67 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch----------HHHh--H
Confidence 47999999999999999999764332 11221111 12222223333 36789999999841 1111 1
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCC-cHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFS-DMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~e-D~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
++. ..+|++++|.+++... +.. -...+..+... ......++|+|.||+|...
T Consensus 68 ~~~-~~ad~iilV~d~td~~-S~~~~~~~~~~l~~~-~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 68 CMQ-YQGDAFVVVYSVTDRS-SFERASELRIQLRRN-RQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred Hhh-cCCCEEEEEEECCCHH-HHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhccc
Confidence 111 1689999998876432 111 12233334332 1223578999999999753
No 177
>PRK00007 elongation factor G; Reviewed
Probab=98.55 E-value=6.1e-07 Score=111.16 Aligned_cols=114 Identities=14% Similarity=0.087 Sum_probs=79.2
Q ss_pred cEEEEEccCCCCHHHHHHHHhc---Ccc-c-ccc------------CcccceeEEEEEEEEECCEEEEEEeCCCCCCCcc
Q 000824 635 CTIMVLGKTGVGKSATINSIFD---EVK-F-GTD------------AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWS 697 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLG---r~v-f-tvd------------a~rstTre~qei~geI~GipVtVIDTPGL~DS~g 697 (1266)
.+|+|+|+.++|||||+|.|+. ... . .++ ..++.|.+.......+.+..++||||||..+
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~--- 87 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD--- 87 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH---
Confidence 5999999999999999999973 211 1 011 2355677666677788999999999999843
Q ss_pred chhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 698 DQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 698 d~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
...++...+. .+|++++|+++.. .....+..++..+.+. ..+.|+++||+|...
T Consensus 88 -------f~~ev~~al~--~~D~~vlVvda~~-g~~~qt~~~~~~~~~~-----~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 88 -------FTIEVERSLR--VLDGAVAVFDAVG-GVEPQSETVWRQADKY-----KVPRIAFVNKMDRTG 141 (693)
T ss_pred -------HHHHHHHHHH--HcCEEEEEEECCC-CcchhhHHHHHHHHHc-----CCCEEEEEECCCCCC
Confidence 1112333332 3689999988653 3454566666666543 467899999999764
No 178
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.55 E-value=5.6e-07 Score=96.09 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=74.4
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccc-------------------------ccc-----CcccceeEEEEEEEEECCEEEE
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKF-------------------------GTD-----AFQMGTKKVQDVVGTVQGIKVR 685 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vf-------------------------tvd-----a~rstTre~qei~geI~GipVt 685 (1266)
+|+++|..|+|||||+.+|+..... ..+ ..+++|.+.......+.+.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999999742110 111 1356677777777788999999
Q ss_pred EEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCC------CCCCcHHHHHHHHHHhCCCCCccEEEEE
Q 000824 686 VIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQN------RDFSDMPLLRTITDIFGPSIWFNAIVVL 759 (1266)
Q Consensus 686 VIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r------~d~eD~elLK~I~eiFG~ei~k~tIVVL 759 (1266)
|+||||..+ ....+...+ ..+|++++|++++... ........+..+ ..++ .++++||+
T Consensus 81 liDtpG~~~----------~~~~~~~~~--~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~iiivv 144 (219)
T cd01883 81 ILDAPGHRD----------FVPNMITGA--SQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLG---VKQLIVAV 144 (219)
T ss_pred EEECCChHH----------HHHHHHHHh--hhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcC---CCeEEEEE
Confidence 999999732 112222222 3489999998876531 111223333322 2333 26899999
Q ss_pred eccCCCC
Q 000824 760 THAASAP 766 (1266)
Q Consensus 760 TKaDeL~ 766 (1266)
||+|...
T Consensus 145 NK~Dl~~ 151 (219)
T cd01883 145 NKMDDVT 151 (219)
T ss_pred Ecccccc
Confidence 9999864
No 179
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.55 E-value=5.8e-07 Score=90.54 Aligned_cols=112 Identities=8% Similarity=0.016 Sum_probs=66.5
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIK 714 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk 714 (1266)
++|+++|..||||||+++.+..... . . +.+++ ...........+++.|+||||... ...+ ...+.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~-~-~-~~pt~-g~~~~~~~~~~~~~~l~D~~G~~~-------~~~~---~~~~~- 65 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEI-V-T-TIPTI-GFNVETVEYKNISFTVWDVGGQDK-------IRPL---WRHYF- 65 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-c-c-cCCCC-CcceEEEEECCEEEEEEECCCCHh-------HHHH---HHHHh-
Confidence 4799999999999999999965422 1 1 22221 111122345678999999999731 1111 12233
Q ss_pred cCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCC--CCccEEEEEeccCCC
Q 000824 715 KTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPS--IWFNAIVVLTHAASA 765 (1266)
Q Consensus 715 ~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~e--i~k~tIVVLTKaDeL 765 (1266)
...|+++||.+++... . -....+.+.+.+... ...+++||.||.|..
T Consensus 66 -~~ad~~i~v~D~~~~~-s--~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 66 -QNTQGLIFVVDSNDRE-R--IGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred -cCCCEEEEEEeCCCHH-H--HHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 3589999998876421 1 111223333332211 136899999999964
No 180
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.54 E-value=4.8e-07 Score=102.96 Aligned_cols=195 Identities=18% Similarity=0.241 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCc----hhHHHHHHHHHcchhHHHHhhhcCCCCC------c-chhHHH-HHHHHHH
Q 000824 558 DETREKLQMIRVKFLRLAHRLG-QTP----HNVVVAQVLYRLGLAEQLRGRNGGRVGA------F-SFDRAS-AMAEQLE 624 (1266)
Q Consensus 558 ~eLr~ELq~LR~kLlrLv~Rlg-~sP----e~~~laQvLyrLgLaE~Li~~~~~rL~~------f-s~d~a~-~LaeqLe 624 (1266)
..++..|...+..|...+..+- ... .-..+...|...++...++..+...+.. . ..+..+ .+.+.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 97 (318)
T PRK10416 18 ERLKKGLSKTRENFGEGINGLFAKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKELLKEELA 97 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 3444555555555543333322 111 1134677788888877777666544321 1 122222 2333333
Q ss_pred HhCC---CCC----CCccEEEEEccCCCCHHHHHHHHhcC------cc--ccccCcccceeEE---------EEEEE---
Q 000824 625 AAGQ---EPL----DFSCTIMVLGKTGVGKSATINSIFDE------VK--FGTDAFQMGTKKV---------QDVVG--- 677 (1266)
Q Consensus 625 ~~~~---e~l----k~slrILLVGpTGVGKSTLINSLLGr------~v--ftvda~rstTre~---------qei~g--- 677 (1266)
..-. .++ ..+..|+|+|++|+|||||+.+|++. .+ +..|.++.++.++ ..+..
T Consensus 98 ~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~ 177 (318)
T PRK10416 98 EILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKE 177 (318)
T ss_pred HHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCC
Confidence 3211 112 23578999999999999999999874 11 2234444321111 01110
Q ss_pred ---------------EECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhh------cCCCCEEEEEeecCCCCCCCCc
Q 000824 678 ---------------TVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIK------KTPPDIVLYLDRLDMQNRDFSD 736 (1266)
Q Consensus 678 ---------------eI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk------~~~pDVVLLVIrld~~r~d~eD 736 (1266)
...++.++||||||.... ....+.+++++.+ ...|+.+++|++++... ..
T Consensus 178 ~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~------~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~---~~ 248 (318)
T PRK10416 178 GADPASVAFDAIQAAKARGIDVLIIDTAGRLHN------KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ---NA 248 (318)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcC------CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh---HH
Confidence 124567999999998643 2344444444433 24578888998877431 12
Q ss_pred HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 737 MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 737 ~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+......+ . .....-+|+||.|...
T Consensus 249 ---~~~a~~f~-~-~~~~~giIlTKlD~t~ 273 (318)
T PRK10416 249 ---LSQAKAFH-E-AVGLTGIILTKLDGTA 273 (318)
T ss_pred ---HHHHHHHH-h-hCCCCEEEEECCCCCC
Confidence 22332221 1 1245679999999664
No 181
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.54 E-value=6.1e-07 Score=91.59 Aligned_cols=114 Identities=13% Similarity=0.082 Sum_probs=65.5
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEEC---CEEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQ---GIKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~---GipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
++|+|+|.+|||||||+|++++.... . .+.+++........... .+.+.++||||... . ..+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~-~-~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~----------~-~~~~~ 67 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP-E-EYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE----------Y-DRLRP 67 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC-C-CCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh----------H-HHHHH
Confidence 47999999999999999999986432 1 12222211111112222 35789999999631 1 11111
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCcH--HHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSDM--PLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD~--elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
. .....|++++|.+++.. .+..+. ..+..+.. +. ...++++|.||+|...
T Consensus 68 ~-~~~~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~-~~--~~~piilv~nK~Dl~~ 119 (187)
T cd04132 68 L-SYPDVDVLLICYAVDNP-TSLDNVEDKWFPEVNH-FC--PGTPIMLVGLKTDLRK 119 (187)
T ss_pred H-hCCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHH-hC--CCCCEEEEEeChhhhh
Confidence 1 12468999999887642 221111 12222222 22 2468999999999753
No 182
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.54 E-value=7.6e-07 Score=94.59 Aligned_cols=117 Identities=16% Similarity=0.155 Sum_probs=67.3
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE-CC--EEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV-QG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI-~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
++|+|+|.+|||||||+|.+++........ +..+.+.......+ .+ +.+.|+||||... .......
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 71 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER----------FRSITRS 71 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-ceeceEEEEEEEEECCCCEEEEEEEeCCcchh----------HHHHHHH
Confidence 689999999999999999999865322211 11122222222223 23 5788999999621 1111122
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
++ ...|++++|.+++... +..+ ...++.+.+.... ...+++||.||+|...
T Consensus 72 ~~--~~~d~iilv~D~~~~~-Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 72 YY--RNSVGVLLVFDITNRE-SFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLES 123 (211)
T ss_pred Hh--cCCcEEEEEEECCCHH-HHHHHHHHHHHHHHhcCC-CCCeEEEEEEcccccc
Confidence 33 3478999997776421 1111 1233334333322 2356788999999753
No 183
>PTZ00369 Ras-like protein; Provisional
Probab=98.54 E-value=4.5e-07 Score=93.73 Aligned_cols=117 Identities=13% Similarity=0.127 Sum_probs=67.6
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
.++|+|+|.+|||||||++.+++..... .+.++..........+.+ +.+.++||||..+. ..+. ..
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~l~---~~ 72 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFID--EYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEY-------SAMR---DQ 72 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCc--CcCCchhhEEEEEEEECCEEEEEEEEeCCCCccc-------hhhH---HH
Confidence 4699999999999999999999764321 222222111222223444 45778999997432 1111 12
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+++ ..+++++|.+++.......-...+..+..... ....++++|.||+|..
T Consensus 73 ~~~--~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 73 YMR--TGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLD 123 (189)
T ss_pred Hhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 222 57899999777643211111223333433322 1246899999999963
No 184
>PRK12739 elongation factor G; Reviewed
Probab=98.53 E-value=6.3e-07 Score=111.00 Aligned_cols=115 Identities=16% Similarity=0.111 Sum_probs=79.6
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccc-----ccc------------CcccceeEEEEEEEEECCEEEEEEeCCCCCCCc
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKF-----GTD------------AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSW 696 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vf-----tvd------------a~rstTre~qei~geI~GipVtVIDTPGL~DS~ 696 (1266)
-.+|.|+|+.++|||||+|.|+..... .++ ..++.|.+.......+.+.+++||||||+.+
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~-- 85 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD-- 85 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH--
Confidence 358999999999999999999853110 111 1355676666777788999999999999842
Q ss_pred cchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 697 SDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 697 gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
...++...+. ..|++++|+++.. .....+..+++.+... ..+.|+++||+|...
T Consensus 86 --------f~~e~~~al~--~~D~~ilVvDa~~-g~~~qt~~i~~~~~~~-----~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 --------FTIEVERSLR--VLDGAVAVFDAVS-GVEPQSETVWRQADKY-----GVPRIVFVNKMDRIG 139 (691)
T ss_pred --------HHHHHHHHHH--HhCeEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECCCCCC
Confidence 1223333333 3689999988764 3444455566655442 467899999999763
No 185
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.53 E-value=9.2e-07 Score=102.64 Aligned_cols=119 Identities=13% Similarity=0.018 Sum_probs=77.2
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcC------ccc----cccC-----cccceeEEEEEEEEECCEEEEEEeCCCCCCC
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDE------VKF----GTDA-----FQMGTKKVQDVVGTVQGIKVRVIDTPGLLPS 695 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr------~vf----tvda-----~rstTre~qei~geI~GipVtVIDTPGL~DS 695 (1266)
.+..++|+++|..++|||||++.|++. ..+ ..+. .++.|.+.........+.++.||||||..+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~- 87 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD- 87 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH-
Confidence 456789999999999999999999842 111 1121 256676665555555778899999999832
Q ss_pred ccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 696 WSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 696 ~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.+..+...+ ..+|++++|++++.. ....+.+.+..+.. ++ ..++|+++||+|...
T Consensus 88 ---------f~~~~~~~~--~~~D~~ilVvda~~g-~~~qt~e~l~~~~~-~g---i~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 88 ---------YVKNMITGA--AQMDGAILVVSATDG-PMPQTREHILLARQ-VG---VPYIVVFLNKCDMVD 142 (394)
T ss_pred ---------HHHHHHHHH--hhCCEEEEEEECCCC-CcHHHHHHHHHHHH-cC---CCEEEEEEEecccCC
Confidence 222222222 358999999887642 33344455555443 22 245567899999764
No 186
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.53 E-value=6e-07 Score=91.39 Aligned_cols=102 Identities=22% Similarity=0.331 Sum_probs=62.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhc
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKK 715 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~ 715 (1266)
+|+|+|++|||||||+|+|+|...+. ..|..+ .+.+. .+|||||+.... ..+.+.+...+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~-----~~~~~v-----~~~~~--~~iDtpG~~~~~------~~~~~~~~~~~-- 62 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA-----RKTQAV-----EFNDK--GDIDTPGEYFSH------PRWYHALITTL-- 62 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC-----ccceEE-----EECCC--CcccCCccccCC------HHHHHHHHHHH--
Confidence 79999999999999999999864321 112111 11222 269999985431 22333333222
Q ss_pred CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 716 TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 716 ~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
..+|++|+|++++..... ... ++... + ..+++++++||+|..
T Consensus 63 ~~ad~il~v~d~~~~~s~-~~~----~~~~~-~--~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 63 QDVDMLIYVHGANDPESR-LPA----GLLDI-G--VSKRQIAVISKTDMP 104 (158)
T ss_pred hcCCEEEEEEeCCCcccc-cCH----HHHhc-c--CCCCeEEEEEccccC
Confidence 368999999887643211 122 22222 2 246799999999963
No 187
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.53 E-value=1.3e-06 Score=89.36 Aligned_cols=116 Identities=15% Similarity=0.175 Sum_probs=69.1
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
.++|+|+|..|||||||++.+++.... ..+.++..........+.+ ..+.|+||||...- ..+. ..
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~l~---~~ 69 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEF-------TAMR---DQ 69 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCchhh-------HHHh---HH
Confidence 368999999999999999999875322 1222222222223345556 56889999997321 1111 12
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCcH-HHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSDM-PLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD~-elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
++. ..|++++|.+++.. .+.... ..++.+.... .....++++|.||+|..
T Consensus 70 ~~~--~~d~~ilv~d~~~~-~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 70 YMR--CGEGFIICYSVTDR-HSFQEASEFKKLITRVR-LTEDIPLVLVGNKVDLE 120 (172)
T ss_pred Hhh--cCCEEEEEEECCch-hHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhh
Confidence 222 47899999877643 222222 2223343322 22357899999999964
No 188
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.52 E-value=9.4e-07 Score=107.67 Aligned_cols=115 Identities=18% Similarity=0.139 Sum_probs=76.5
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCcc--ccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVK--FGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~v--ftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+++|..++|||||+|+|+|... +.....++.|.++...+..+.+..+.||||||.. .+.+.+...
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe----------~f~~~~~~g 70 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE----------KFISNAIAG 70 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH----------HHHHHHHhh
Confidence 4799999999999999999998542 2112234556666555666778999999999962 223333222
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+ ..+|++++|++++.. ......+.+..+ ..+| ..++|||+||+|...
T Consensus 71 ~--~~aD~aILVVDa~~G-~~~qT~ehl~il-~~lg---i~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 71 G--GGIDAALLVVDADEG-VMTQTGEHLAVL-DLLG---IPHTIVVITKADRVN 117 (581)
T ss_pred h--ccCCEEEEEEECCCC-CcHHHHHHHHHH-HHcC---CCeEEEEEECCCCCC
Confidence 2 358999999888642 222333444433 3333 245999999999763
No 189
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.52 E-value=6.6e-07 Score=110.72 Aligned_cols=114 Identities=16% Similarity=0.052 Sum_probs=78.2
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCcccc-----c-------c-----CcccceeEEEEEEEEECCEEEEEEeCCCCCCCcc
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFG-----T-------D-----AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWS 697 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vft-----v-------d-----a~rstTre~qei~geI~GipVtVIDTPGL~DS~g 697 (1266)
.+|+|+|..++|||||+|+|+.....+ + + ..++.|.........+.+.++.||||||+.+-.
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~- 89 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT- 89 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh-
Confidence 599999999999999999998532111 1 1 135567677777788899999999999996421
Q ss_pred chhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 698 DQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 698 d~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.. +..++. ..|++++|+++... ....+..+++.+... ..++++++||+|...
T Consensus 90 -----~~----~~~~l~--~~D~~ilVvda~~g-~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 90 -----VE----VERSLR--VLDGAVAVLDAVGG-VQPQSETVWRQANRY-----EVPRIAFVNKMDKTG 141 (689)
T ss_pred -----HH----HHHHHH--HhCEEEEEEeCCCC-CChhHHHHHHHHHHc-----CCCEEEEEECCCCCC
Confidence 11 223332 36899999887642 333444555554332 468899999999763
No 190
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.52 E-value=1.6e-07 Score=108.90 Aligned_cols=113 Identities=24% Similarity=0.223 Sum_probs=69.1
Q ss_pred ccEEEEEccCCCCHHHHHHHHhc-----CccccccCcccceeEEEEEEEEECC-EEEEEEeCCCCCCCccchhchHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFD-----EVKFGTDAFQMGTKKVQDVVGTVQG-IKVRVIDTPGLLPSWSDQRQNEKILH 707 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLG-----r~vftvda~rstTre~qei~geI~G-ipVtVIDTPGL~DS~gd~~~neeIlk 707 (1266)
.++|+|+|.+|+|||||||+|.| ...+.++... +|.+...+. ... -+++++|.||++.+ ....+.+++
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~e-tT~~~~~Y~--~p~~pnv~lWDlPG~gt~---~f~~~~Yl~ 108 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVE-TTMEPTPYP--HPKFPNVTLWDLPGIGTP---NFPPEEYLK 108 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHS-CCTS-EEEE---SS-TTEEEEEE--GGGS---S--HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCc-CCCCCeeCC--CCCCCCCeEEeCCCCCCC---CCCHHHHHH
Confidence 46999999999999999999987 2344444433 333333332 122 24899999999753 345566665
Q ss_pred HHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCC
Q 000824 708 SVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAAS 764 (1266)
Q Consensus 708 eIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDe 764 (1266)
.+ .....|++|++. + .++...+..+.+.|+++ .++..+|-||+|.
T Consensus 109 ~~----~~~~yD~fiii~--s-~rf~~ndv~La~~i~~~-----gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 109 EV----KFYRYDFFIIIS--S-ERFTENDVQLAKEIQRM-----GKKFYFVRTKVDS 153 (376)
T ss_dssp HT----TGGG-SEEEEEE--S-SS--HHHHHHHHHHHHT-----T-EEEEEE--HHH
T ss_pred Hc----cccccCEEEEEe--C-CCCchhhHHHHHHHHHc-----CCcEEEEEecccc
Confidence 54 234588877762 2 45777888888888875 6889999999995
No 191
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.51 E-value=1.6e-06 Score=87.17 Aligned_cols=115 Identities=14% Similarity=0.259 Sum_probs=67.0
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+++|+.|+|||||++.+++...... ..+....++......+.+ +.+.|+||||.... ..+ ...+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-------~~~---~~~~ 69 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSS-HISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERY-------QTI---TKQY 69 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhH-------Hhh---HHHH
Confidence 3799999999999999999997643221 111112222223334455 56789999996321 111 2223
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
. ..+|++++|.+++... +... ...++.+.... ....++++|.||.|..
T Consensus 70 ~--~~~~~~i~v~d~~~~~-sf~~~~~~~~~~~~~~--~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 70 Y--RRAQGIFLVYDISSER-SYQHIMKWVSDVDEYA--PEGVQKILIGNKADEE 118 (161)
T ss_pred h--cCCcEEEEEEECCCHH-HHHHHHHHHHHHHHhC--CCCCeEEEEEECcccc
Confidence 3 3579999998776431 1111 12233332221 1246899999999975
No 192
>PRK00049 elongation factor Tu; Reviewed
Probab=98.51 E-value=1e-06 Score=102.66 Aligned_cols=117 Identities=12% Similarity=0.039 Sum_probs=78.2
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcCcc-------c---ccc-----CcccceeEEEEEEEEECCEEEEEEeCCCCCCC
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDEVK-------F---GTD-----AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPS 695 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr~v-------f---tvd-----a~rstTre~qei~geI~GipVtVIDTPGL~DS 695 (1266)
.+..++|+++|..++|||||+++|++... . ..+ ..++.|.+.........+..++||||||..
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~-- 86 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA-- 86 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH--
Confidence 45578999999999999999999997310 0 011 135566666555555678899999999972
Q ss_pred ccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccE-EEEEeccCCC
Q 000824 696 WSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNA-IVVLTHAASA 765 (1266)
Q Consensus 696 ~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~t-IVVLTKaDeL 765 (1266)
+++..+...+ ..+|++++|+++.. .....+.+.+..+.. ++ .+. |+++||+|..
T Consensus 87 --------~f~~~~~~~~--~~aD~~llVVDa~~-g~~~qt~~~~~~~~~-~g----~p~iiVvvNK~D~~ 141 (396)
T PRK00049 87 --------DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQ-VG----VPYIVVFLNKCDMV 141 (396)
T ss_pred --------HHHHHHHhhh--ccCCEEEEEEECCC-CCchHHHHHHHHHHH-cC----CCEEEEEEeecCCc
Confidence 3333333333 46899999988764 344445555655443 33 455 5689999975
No 193
>PLN03108 Rab family protein; Provisional
Probab=98.50 E-value=1.4e-06 Score=92.24 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=67.0
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
.++|+|+|++|+|||||+|.|++......... ....+.......+.+ +.+.++||||... .......
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~-ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~----------~~~~~~~ 74 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDNKPIKLQIWDTAGQES----------FRSITRS 74 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-CccceEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHHHH
Confidence 47999999999999999999998643322111 111121122233444 4578999999631 1111122
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCcH-HHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSDM-PLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD~-elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
++ ...|++++|.+++... ..... ..+..+..... ...++++|.||+|..
T Consensus 75 ~~--~~ad~~vlv~D~~~~~-s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 75 YY--RGAAGALLVYDITRRE-TFNHLASWLEDARQHAN--ANMTIMLIGNKCDLA 124 (210)
T ss_pred Hh--ccCCEEEEEEECCcHH-HHHHHHHHHHHHHHhcC--CCCcEEEEEECccCc
Confidence 33 2578899997775421 11111 22333333322 246899999999964
No 194
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.49 E-value=3.8e-07 Score=102.01 Aligned_cols=85 Identities=20% Similarity=0.229 Sum_probs=60.8
Q ss_pred EEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCE-----------------EEEEEeCCCCCCCccch
Q 000824 637 IMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGI-----------------KVRVIDTPGLLPSWSDQ 699 (1266)
Q Consensus 637 ILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~Gi-----------------pVtVIDTPGL~DS~gd~ 699 (1266)
|.|||.+|||||||+|+|++... .+..|+.+|.+.......+.+. ++.++||||+.....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~-- 77 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS-- 77 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCc--
Confidence 57999999999999999999876 6777888887766555555442 499999999986431
Q ss_pred hchHHHHHHHHHhhhcCCCCEEEEEeec
Q 000824 700 RQNEKILHSVKRFIKKTPPDIVLYLDRL 727 (1266)
Q Consensus 700 ~~neeIlkeIKkfLk~~~pDVVLLVIrl 727 (1266)
..+.+-......+ ..+|++++|+++
T Consensus 78 -~~~glg~~fL~~i--~~~D~li~VV~~ 102 (274)
T cd01900 78 -KGEGLGNKFLSHI--REVDAIAHVVRC 102 (274)
T ss_pred -hhhHHHHHHHHHH--HhCCEEEEEEeC
Confidence 1223332222222 358999999875
No 195
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.49 E-value=1.3e-06 Score=88.70 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=66.6
Q ss_pred EEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcC
Q 000824 637 IMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKT 716 (1266)
Q Consensus 637 ILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~ 716 (1266)
|+|+|.+||||||+++++.+... .. .+.++. ..........++.+.++||||-..- ..+. ..++ .
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~~-~~~pt~-g~~~~~i~~~~~~l~i~Dt~G~~~~-------~~~~---~~~~--~ 66 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-LE-SVVPTT-GFNSVAIPTQDAIMELLEIGGSQNL-------RKYW---KRYL--S 66 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-cc-cccccC-CcceEEEeeCCeEEEEEECCCCcch-------hHHH---HHHH--h
Confidence 79999999999999999998632 21 121111 1111223446788999999997321 1111 1223 2
Q ss_pred CCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 717 PPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 717 ~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
..|+++||++.+... .. .....++.+.+......++++|.||.|..
T Consensus 67 ~ad~ii~V~D~t~~~-s~--~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 67 GSQGLIFVVDSADSE-RL--PLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred hCCEEEEEEECCCHH-HH--HHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 579999998776432 11 11222333333222468899999999964
No 196
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.49 E-value=4.2e-07 Score=91.16 Aligned_cols=112 Identities=16% Similarity=0.152 Sum_probs=67.0
Q ss_pred EEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHhhh
Q 000824 637 IMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIK 714 (1266)
Q Consensus 637 ILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk 714 (1266)
|+|+|..|||||||+|++++.... . .+.++..........+.+ +.+.++||||...-. . +... .
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~----~~~~-~ 66 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP-E-DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD-------R----LRPL-S 66 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC-C-CCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccc-------h----hchh-h
Confidence 689999999999999999986432 2 222222222222334455 358899999974210 1 1111 1
Q ss_pred cCCCCEEEEEeecCCCCCCCCcH--HHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 715 KTPPDIVLYLDRLDMQNRDFSDM--PLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 715 ~~~pDVVLLVIrld~~r~d~eD~--elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
....|++++|.+++.. .+.... ..+..+...+ ...++++|.||+|...
T Consensus 67 ~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~ 116 (174)
T smart00174 67 YPDTDVFLICFSVDSP-ASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLRE 116 (174)
T ss_pred cCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhh
Confidence 2358999999887632 111111 2334444432 2579999999999754
No 197
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.48 E-value=8.3e-07 Score=94.05 Aligned_cols=113 Identities=15% Similarity=0.148 Sum_probs=66.1
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccc-------------cC-----cccceeEEEEEEEEE-----CCEEEEEEeCCCC
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGT-------------DA-----FQMGTKKVQDVVGTV-----QGIKVRVIDTPGL 692 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftv-------------da-----~rstTre~qei~geI-----~GipVtVIDTPGL 692 (1266)
+|+|+|..|+|||||++.|+....... +. .++.|.........+ ..+.+.|+||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999997532211 10 011222111222222 2378999999998
Q ss_pred CCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 693 LPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 693 ~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.+- ......++. ..|++++|+++... ........++.+.. ...+.++|+||+|.+.
T Consensus 82 ~~f----------~~~~~~~~~--~aD~~llVvD~~~~-~~~~~~~~~~~~~~-----~~~p~iiviNK~D~~~ 137 (213)
T cd04167 82 VNF----------MDEVAAALR--LSDGVVLVVDVVEG-VTSNTERLIRHAIL-----EGLPIVLVINKIDRLI 137 (213)
T ss_pred cch----------HHHHHHHHH--hCCEEEEEEECCCC-CCHHHHHHHHHHHH-----cCCCEEEEEECcccCc
Confidence 531 111222222 47899999877532 22222233333221 1378999999999874
No 198
>PRK12736 elongation factor Tu; Reviewed
Probab=98.48 E-value=1.1e-06 Score=102.05 Aligned_cols=118 Identities=13% Similarity=0.022 Sum_probs=77.7
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcCc------ccc----cc-----CcccceeEEEEEEEEECCEEEEEEeCCCCCCC
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDEV------KFG----TD-----AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPS 695 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr~------vft----vd-----a~rstTre~qei~geI~GipVtVIDTPGL~DS 695 (1266)
.+..++|+++|..++|||||+++|++.. .+. .+ ..++.|.++........+..++||||||..
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~-- 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA-- 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH--
Confidence 4567899999999999999999999731 111 11 145566666555555567889999999962
Q ss_pred ccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 696 WSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 696 ~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+++..+...+ ..+|++++|++++. .....+.+.+..+.. .| ..++||++||+|..
T Consensus 87 --------~f~~~~~~~~--~~~d~~llVvd~~~-g~~~~t~~~~~~~~~-~g---~~~~IvviNK~D~~ 141 (394)
T PRK12736 87 --------DYVKNMITGA--AQMDGAILVVAATD-GPMPQTREHILLARQ-VG---VPYLVVFLNKVDLV 141 (394)
T ss_pred --------HHHHHHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHH-cC---CCEEEEEEEecCCc
Confidence 2223332222 35899999988764 233345555655543 23 24478899999975
No 199
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.48 E-value=2.7e-06 Score=103.97 Aligned_cols=115 Identities=15% Similarity=0.098 Sum_probs=74.0
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCE-EEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGI-KVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~Gi-pVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
.++.+|+++|..++|||||+|+|.+..... ..+++.|.....+...+.+. +++|+||||..+- . .+. .
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----~--~~r---~ 153 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----T--SMR---A 153 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCCcch-----h--hHH---H
Confidence 356799999999999999999999864433 23345555554555556444 8999999997421 1 111 1
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+. ....|++++|++++.. ......+.++.+.. ...++||++||+|..
T Consensus 154 rg--a~~aDiaILVVda~dg-v~~qT~e~i~~~~~-----~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 154 RG--AKVTDIVVLVVAADDG-VMPQTIEAISHAKA-----ANVPIIVAINKIDKP 200 (587)
T ss_pred hh--hccCCEEEEEEECCCC-CCHhHHHHHHHHHH-----cCCCEEEEEECcccc
Confidence 11 2357899999877642 22223333333221 246899999999974
No 200
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.47 E-value=1e-06 Score=108.00 Aligned_cols=119 Identities=16% Similarity=0.051 Sum_probs=76.9
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcCccccc------------------c---------C-----cccceeEEEEEEEE
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDEVKFGT------------------D---------A-----FQMGTKKVQDVVGT 678 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr~vftv------------------d---------a-----~rstTre~qei~ge 678 (1266)
.+..++|+++|.+++|||||+|.|+......+ + . -++.|.+.......
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 34457999999999999999999997533221 1 0 12345555555566
Q ss_pred ECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEE
Q 000824 679 VQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVV 758 (1266)
Q Consensus 679 I~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVV 758 (1266)
+.+.+++||||||.. .+...+...+ ..+|++|+|++++.. ....+.+.+..+ ..++ .+++|||
T Consensus 101 ~~~~~~~liDtPG~~----------~f~~~~~~~~--~~aD~~llVvda~~g-~~~~t~e~~~~~-~~~~---~~~iivv 163 (632)
T PRK05506 101 TPKRKFIVADTPGHE----------QYTRNMVTGA--STADLAIILVDARKG-VLTQTRRHSFIA-SLLG---IRHVVLA 163 (632)
T ss_pred cCCceEEEEECCChH----------HHHHHHHHHH--HhCCEEEEEEECCCC-ccccCHHHHHHH-HHhC---CCeEEEE
Confidence 788899999999962 1222222222 358999999887642 333344444433 3333 3678999
Q ss_pred EeccCCCC
Q 000824 759 LTHAASAP 766 (1266)
Q Consensus 759 LTKaDeL~ 766 (1266)
+||+|...
T Consensus 164 vNK~D~~~ 171 (632)
T PRK05506 164 VNKMDLVD 171 (632)
T ss_pred EEeccccc
Confidence 99999763
No 201
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.46 E-value=2.3e-07 Score=93.62 Aligned_cols=57 Identities=33% Similarity=0.532 Sum_probs=48.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGL 692 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL 692 (1266)
...+|+++|.+||||||++|+|++...+.++..+++|+..+.+. + +..+.+|||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVK--L-DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEE--e-cCCEEEEECCCC
Confidence 46799999999999999999999988777888888888766543 2 356899999996
No 202
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.46 E-value=6.9e-07 Score=103.39 Aligned_cols=88 Identities=19% Similarity=0.180 Sum_probs=62.7
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC-----------------EEEEEEeCCCCCCCcc
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG-----------------IKVRVIDTPGLLPSWS 697 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G-----------------ipVtVIDTPGL~DS~g 697 (1266)
++|.|||.+|||||||+|+|++.. ..+..|+.+|.+.......+.+ .++.++||||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 689999999999999999999987 5677788888776554444433 2589999999986431
Q ss_pred chhchHHHHHHHHHhhhcCCCCEEEEEeecC
Q 000824 698 DQRQNEKILHSVKRFIKKTPPDIVLYLDRLD 728 (1266)
Q Consensus 698 d~~~neeIlkeIKkfLk~~~pDVVLLVIrld 728 (1266)
..+.+-......+ ..+|++++|+++.
T Consensus 82 ---~g~glg~~fL~~i--~~aD~li~VVd~f 107 (364)
T PRK09601 82 ---KGEGLGNQFLANI--REVDAIVHVVRCF 107 (364)
T ss_pred ---hHHHHHHHHHHHH--HhCCEEEEEEeCC
Confidence 1223332222222 3589999998764
No 203
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.46 E-value=1.5e-06 Score=94.08 Aligned_cols=115 Identities=17% Similarity=0.080 Sum_probs=70.5
Q ss_pred EEEEEccCCCCHHHHHHHHhcCcc------ccc--cC-----cccce------------------------eEEEEEEEE
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVK------FGT--DA-----FQMGT------------------------KKVQDVVGT 678 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~v------ftv--da-----~rstT------------------------re~qei~ge 678 (1266)
+|+++|..++|||||++.|..... ... +. .++-| ...-.....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 588999999999999999984210 000 00 00000 000001223
Q ss_pred ECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEE
Q 000824 679 VQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVV 758 (1266)
Q Consensus 679 I~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVV 758 (1266)
..+..++||||||.. ...+.....+....+|++++|++++. .....+..++..+... ..++++|
T Consensus 81 ~~~~~i~liDtpG~~----------~~~~~~~~~~~~~~~D~~llVvda~~-g~~~~d~~~l~~l~~~-----~ip~ivv 144 (224)
T cd04165 81 KSSKLVTFIDLAGHE----------RYLKTTLFGLTGYAPDYAMLVVAANA-GIIGMTKEHLGLALAL-----NIPVFVV 144 (224)
T ss_pred eCCcEEEEEECCCcH----------HHHHHHHHhhcccCCCEEEEEEECCC-CCcHHHHHHHHHHHHc-----CCCEEEE
Confidence 457889999999973 22233333333246899999988764 3444566677766543 4679999
Q ss_pred EeccCCCC
Q 000824 759 LTHAASAP 766 (1266)
Q Consensus 759 LTKaDeL~ 766 (1266)
+||+|.+.
T Consensus 145 vNK~D~~~ 152 (224)
T cd04165 145 VTKIDLAP 152 (224)
T ss_pred EECccccC
Confidence 99999764
No 204
>PTZ00258 GTP-binding protein; Provisional
Probab=98.46 E-value=6.9e-07 Score=104.27 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=64.5
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEEC-----------------CEEEEEEeCCCCC
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQ-----------------GIKVRVIDTPGLL 693 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~-----------------GipVtVIDTPGL~ 693 (1266)
....+.|.|||.+|||||||+|+|.+.. ..+..|+.+|.+.......+. ..++.||||||+.
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 3456799999999999999999998875 467778888877666554443 2358999999998
Q ss_pred CCccchhchHHHHHHHHHhhhcCCCCEEEEEeecC
Q 000824 694 PSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLD 728 (1266)
Q Consensus 694 DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld 728 (1266)
.... ..+.+-..+...+ ..+|++++|++..
T Consensus 97 ~ga~---~g~gLg~~fL~~I--r~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGAS---EGEGLGNAFLSHI--RAVDGIYHVVRAF 126 (390)
T ss_pred cCCc---chhHHHHHHHHHH--HHCCEEEEEEeCC
Confidence 5421 1222222222222 2489999998763
No 205
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.46 E-value=2.9e-06 Score=87.96 Aligned_cols=114 Identities=9% Similarity=0.038 Sum_probs=69.4
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
..++|+++|..||||||+++.+....... +.+ |..+........++.+.++||||-.. ...+ ...+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~---~~p-t~g~~~~~~~~~~~~~~i~D~~Gq~~-------~~~~---~~~~ 81 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT---TIP-TIGFNVETVEYKNISFTVWDVGGQDK-------IRPL---WRHY 81 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc---ccC-CcceeEEEEEECCEEEEEEECCCCHH-------HHHH---HHHH
Confidence 34799999999999999999998543221 111 21222223456789999999999621 1111 2223
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCC--CCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPS--IWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~e--i~k~tIVVLTKaDeL 765 (1266)
+ ..+|+++||.+++... .-......+...+... ...+++||.||.|..
T Consensus 82 ~--~~a~~iI~V~D~s~~~---s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 82 F--QNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred h--ccCCEEEEEEeCCcHH---HHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 3 3589999998765321 1112233444443321 246899999999963
No 206
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.46 E-value=1.7e-06 Score=88.17 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=68.9
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCccccee-EEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTK-KVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTr-e~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
.++|+|+|.+|||||||++.+++.. |.+..+.+++. ........+.| +.+.+.||+|-.... .+. .
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-------~~~---~ 72 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRS-FSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAI-------LLN---D 72 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCC-CCcccCCCccCcceEEEEEEECCeEEEEEEEecCCccccc-------ccc---h
Confidence 4689999999999999999999864 33233333332 22222234455 567888999864320 000 1
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
.++ ...|++|||.+++.. .....+..+...+......++++|.||+|..
T Consensus 73 ~~~--~~~d~~llv~d~~~~----~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 73 AEL--AACDVACLVYDSSDP----KSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred hhh--hcCCEEEEEEeCCCH----HHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 112 358999999876532 1222222333333222357999999999974
No 207
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.45 E-value=9.7e-07 Score=89.39 Aligned_cols=114 Identities=19% Similarity=0.175 Sum_probs=69.6
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+++|+.|+||||+++++++.. +.. .+.+++.+.......+.+ +.+.|+||||...- ..+...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~-~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~~ 67 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG-YPT-EYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEF-----------DKLRPL 67 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCC-CCCCceeeeeeEEEEECCEEEEEEEEECCCChhh-----------cccccc
Confidence 479999999999999999998753 322 334444444434445555 56788999997321 011111
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc--HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD--MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD--~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.....|++++|.+++... +... ...+..+.... ...++++|.||+|+..
T Consensus 68 -~~~~a~~~i~v~d~~~~~-sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 118 (173)
T cd04130 68 -CYPDTDVFLLCFSVVNPS-SFQNISEKWIPEIRKHN---PKAPIILVGTQADLRT 118 (173)
T ss_pred -ccCCCcEEEEEEECCCHH-HHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhcc
Confidence 123689999998776431 1111 12333443321 2478999999999753
No 208
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.45 E-value=3e-06 Score=99.00 Aligned_cols=115 Identities=17% Similarity=0.078 Sum_probs=75.7
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccc---------------------------c-----CcccceeEEEEEEEEECCE
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGT---------------------------D-----AFQMGTKKVQDVVGTVQGI 682 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftv---------------------------d-----a~rstTre~qei~geI~Gi 682 (1266)
++|+++|..++|||||++.|+....... | ..++.|.+....+..+.+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999985421110 1 1234456666666677889
Q ss_pred EEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEecc
Q 000824 683 KVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHA 762 (1266)
Q Consensus 683 pVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKa 762 (1266)
++.||||||.. ++...+...+ ..+|++|+|+++... ....+.+.+..+ ..++ .+++||++||+
T Consensus 81 ~~~liDtPGh~----------~f~~~~~~~~--~~aD~allVVda~~G-~~~qt~~~~~~~-~~~~---~~~iivviNK~ 143 (406)
T TIGR02034 81 KFIVADTPGHE----------QYTRNMATGA--STADLAVLLVDARKG-VLEQTRRHSYIA-SLLG---IRHVVLAVNKM 143 (406)
T ss_pred EEEEEeCCCHH----------HHHHHHHHHH--hhCCEEEEEEECCCC-CccccHHHHHHH-HHcC---CCcEEEEEEec
Confidence 99999999962 2222222222 358999999887643 333444444433 3344 35789999999
Q ss_pred CCCC
Q 000824 763 ASAP 766 (1266)
Q Consensus 763 DeL~ 766 (1266)
|...
T Consensus 144 D~~~ 147 (406)
T TIGR02034 144 DLVD 147 (406)
T ss_pred cccc
Confidence 9763
No 209
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.44 E-value=1.7e-06 Score=86.88 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=67.1
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+++|++|+|||||+|+++..... ..+.++..........+.+ +.+.++||||...-. . +..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~----~~~- 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD-------R----LRP- 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccc-------c----ccc-
Confidence 47999999999999999999976432 1222233223233334555 447799999974311 0 111
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcH--HHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDM--PLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~--elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
......|++++|.+++.. .+..+. ..+..+... ....++++|.||+|+.
T Consensus 67 ~~~~~~~~~ilv~~~~~~-~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~ 117 (174)
T cd04135 67 LSYPMTDVFLICFSVVNP-ASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLR 117 (174)
T ss_pred ccCCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhh
Confidence 112357899998776532 111111 223334332 2357899999999964
No 210
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.43 E-value=1e-06 Score=90.46 Aligned_cols=101 Identities=24% Similarity=0.320 Sum_probs=64.8
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIK 714 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk 714 (1266)
.+|+|||++|+|||||+++|.+.... +. -|+.+ .++ + .+|||||-. ..+..+.+.|....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~----~~-KTq~i-~~~----~---~~IDTPGEy------iE~~~~y~aLi~ta- 61 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR----YK-KTQAI-EYY----D---NTIDTPGEY------IENPRFYHALIVTA- 61 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC----cC-cccee-Eec----c---cEEECChhh------eeCHHHHHHHHHHH-
Confidence 48999999999999999999996431 11 12111 111 1 369999965 23445555554332
Q ss_pred cCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 715 KTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 715 ~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
..+|+|++|.+++...... -..|..-+.+++|=|+||+|..
T Consensus 62 -~dad~V~ll~dat~~~~~~---------pP~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 62 -QDADVVLLLQDATEPRSVF---------PPGFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred -hhCCEEEEEecCCCCCccC---------CchhhcccCCCEEEEEECccCc
Confidence 3589999998887542211 1112223358999999999976
No 211
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.43 E-value=1.5e-06 Score=95.21 Aligned_cols=117 Identities=18% Similarity=0.323 Sum_probs=69.5
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
.+|+|+|..|||||||+|.+++.. |.. .+.+++.+.......+.+ +.+.|+||+|..+- . .+...
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~-f~~-~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~-------~----~~~~~ 67 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGR-FEE-QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPF-------P----AMRRL 67 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCC-CCC-CCCCChhHhEEEEEEECCEEEEEEEEECCCChhh-------h----HHHHH
Confidence 379999999999999999998653 221 233333232333334555 67889999997421 1 11111
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHh-------CCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIF-------GPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiF-------G~ei~k~tIVVLTKaDeL~ 766 (1266)
.....|++|+|.+++.. .+... ...++.|.... ......++|||.||+|...
T Consensus 68 -~~~~ad~iIlVfdv~~~-~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 68 -SILTGDVFILVFSLDNR-ESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred -HhccCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 12357999999887642 11111 22334443321 0123578999999999753
No 212
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.43 E-value=2.6e-06 Score=90.78 Aligned_cols=115 Identities=15% Similarity=0.259 Sum_probs=69.5
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
+.|+++|..||||||+++.++... |........+.........+.+ +.+.|+||+|-.. ...+ ...|
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~-f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~-------~~~l---~~~y 69 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDT-FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQER-------FNSI---TSAY 69 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchh-------hHHH---HHHH
Confidence 469999999999999999998643 3221112222333333445666 6789999999731 1111 1223
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcH-HHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDM-PLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~-elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
++ ..|++++|.+++... +.... ..+..+..... ...+++||.||+|..
T Consensus 70 ~~--~ad~iIlVfDvtd~~-Sf~~l~~w~~~i~~~~~--~~~piilVgNK~DL~ 118 (202)
T cd04120 70 YR--SAKGIILVYDITKKE-TFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCE 118 (202)
T ss_pred hc--CCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCC--CCCcEEEEEECcccc
Confidence 33 589999998876432 21221 22333333322 246899999999964
No 213
>PLN03126 Elongation factor Tu; Provisional
Probab=98.42 E-value=2.8e-06 Score=101.49 Aligned_cols=119 Identities=12% Similarity=0.010 Sum_probs=78.2
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcCccc---------------cccCcccceeEEEEEEEEECCEEEEEEeCCCCCCC
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDEVKF---------------GTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPS 695 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr~vf---------------tvda~rstTre~qei~geI~GipVtVIDTPGL~DS 695 (1266)
.+..++|+++|..++|||||++.|++.... .....++.|.++...+....+..++||||||..
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~-- 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA-- 155 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH--
Confidence 345689999999999999999999963211 011234556665555566788999999999973
Q ss_pred ccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 696 WSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 696 ~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+++..+...+ ..+|++++|+++... ......+.+..+. .+| .+++||++||+|...
T Consensus 156 --------~f~~~~~~g~--~~aD~ailVVda~~G-~~~qt~e~~~~~~-~~g---i~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 156 --------DYVKNMITGA--AQMDGAILVVSGADG-PMPQTKEHILLAK-QVG---VPNMVVFLNKQDQVD 211 (478)
T ss_pred --------HHHHHHHHHH--hhCCEEEEEEECCCC-CcHHHHHHHHHHH-HcC---CCeEEEEEecccccC
Confidence 2333333333 258999999887642 3333444454433 333 245889999999754
No 214
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.42 E-value=2.8e-07 Score=95.68 Aligned_cols=56 Identities=29% Similarity=0.425 Sum_probs=44.3
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCcc--------ccccCcccceeEEEEEEEEECCEEEEEEeCCCC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVK--------FGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGL 692 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~v--------ftvda~rstTre~qei~geI~GipVtVIDTPGL 692 (1266)
..+|+|+|.+|||||||||+|++... ..++..+++|+..+.+.. +..+.||||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL---GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec---CCCCEEEeCcCC
Confidence 46899999999999999999998643 345566778888766653 225799999997
No 215
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=2.6e-07 Score=102.59 Aligned_cols=124 Identities=20% Similarity=0.340 Sum_probs=83.2
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcCccccc---cCc-----ccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhch
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDEVKFGT---DAF-----QMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQN 702 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr~vftv---da~-----rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~n 702 (1266)
..+.++|+-||.||.|||||+++|++...-.. ..+ +..|.+.++.. -..+++|+||.||+|- ...
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsn---vrlKLtiv~tvGfGDQ----inK 111 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESN---VRLKLTIVDTVGFGDQ----INK 111 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcC---eeEEEEEEeecccccc----cCc
Confidence 35788999999999999999999998632111 111 22222222211 1357899999999763 222
Q ss_pred HHHHHHHHHhhh---------------------cCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEec
Q 000824 703 EKILHSVKRFIK---------------------KTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTH 761 (1266)
Q Consensus 703 eeIlkeIKkfLk---------------------~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTK 761 (1266)
++-++.|..|+. ..++|++||++..+.+.+...|.-.|+.+.+. .++|.|+.|
T Consensus 112 ~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAK 185 (406)
T KOG3859|consen 112 EDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAK 185 (406)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHH
Confidence 222222222222 25799999999999888777777777777553 689999999
Q ss_pred cCCCCC
Q 000824 762 AASAPP 767 (1266)
Q Consensus 762 aDeL~P 767 (1266)
+|.+..
T Consensus 186 aDtisK 191 (406)
T KOG3859|consen 186 ADTISK 191 (406)
T ss_pred hhhhhH
Confidence 997753
No 216
>PRK14974 cell division protein FtsY; Provisional
Probab=98.41 E-value=2e-07 Score=106.81 Aligned_cols=120 Identities=23% Similarity=0.361 Sum_probs=76.5
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcC------cc--ccccCcccceeEEEE---------EE-E-----------------
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDE------VK--FGTDAFQMGTKKVQD---------VV-G----------------- 677 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr------~v--ftvda~rstTre~qe---------i~-g----------------- 677 (1266)
.+..|+|+|++|+||||++.+|+.. .+ +..+.++.++.++.. +. .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999852 12 233555543221110 00 0
Q ss_pred EECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEE
Q 000824 678 TVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIV 757 (1266)
Q Consensus 678 eI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIV 757 (1266)
...++.++||||||... .+...+.+++++.....||.++||+++... .......+.+.+. ....-+
T Consensus 219 ~~~~~DvVLIDTaGr~~------~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g---~d~~~~a~~f~~~-----~~~~gi 284 (336)
T PRK14974 219 KARGIDVVLIDTAGRMH------TDANLMDELKKIVRVTKPDLVIFVGDALAG---NDAVEQAREFNEA-----VGIDGV 284 (336)
T ss_pred HhCCCCEEEEECCCccC------CcHHHHHHHHHHHHhhCCceEEEeeccccc---hhHHHHHHHHHhc-----CCCCEE
Confidence 11356799999999964 345677788877776789999999876542 1122223333222 234779
Q ss_pred EEeccCCCC
Q 000824 758 VLTHAASAP 766 (1266)
Q Consensus 758 VLTKaDeL~ 766 (1266)
||||.|..+
T Consensus 285 IlTKlD~~~ 293 (336)
T PRK14974 285 ILTKVDADA 293 (336)
T ss_pred EEeeecCCC
Confidence 999999864
No 217
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.40 E-value=2.1e-06 Score=106.99 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=72.5
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE----CCEEEEEEeCCCCCCCccchhchHHHHH
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV----QGIKVRVIDTPGLLPSWSDQRQNEKILH 707 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI----~GipVtVIDTPGL~DS~gd~~~neeIlk 707 (1266)
....+|+|+|.+|+|||||+++|.+..... ...++.|.....+...+ .+..++|+||||... ...
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~----------F~~ 310 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA----------FSS 310 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcHHH----------HHH
Confidence 356799999999999999999999764332 22233343322222222 358999999999721 111
Q ss_pred HHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 708 SVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 708 eIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
....++ ...|++++|++++.. ......+.++.+.. ...++||++||+|..
T Consensus 311 mr~rg~--~~aDiaILVVDA~dG-v~~QT~E~I~~~k~-----~~iPiIVViNKiDl~ 360 (742)
T CHL00189 311 MRSRGA--NVTDIAILIIAADDG-VKPQTIEAINYIQA-----ANVPIIVAINKIDKA 360 (742)
T ss_pred HHHHHH--HHCCEEEEEEECcCC-CChhhHHHHHHHHh-----cCceEEEEEECCCcc
Confidence 222233 248999999887642 33333444444322 357899999999975
No 218
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.39 E-value=5.3e-06 Score=97.14 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=76.0
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccc-------------------------ccc-----CcccceeEEEEEEEEECCE
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKF-------------------------GTD-----AFQMGTKKVQDVVGTVQGI 682 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vf-------------------------tvd-----a~rstTre~qei~geI~Gi 682 (1266)
..++|+++|..++|||||++.|+..... ..+ ..++.|.+.......+.++
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 4579999999999999999999853110 011 1345666766667777889
Q ss_pred EEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCC--CCcHHHHHHHHHHhCCCCCccEEEEEe
Q 000824 683 KVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRD--FSDMPLLRTITDIFGPSIWFNAIVVLT 760 (1266)
Q Consensus 683 pVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d--~eD~elLK~I~eiFG~ei~k~tIVVLT 760 (1266)
.+.|+||||.. .+++.+...+ ...|++++|++++...+. ......+ .+...++ ..++|||+|
T Consensus 86 ~i~iiDtpGh~----------~f~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~~---~~~iIVviN 149 (426)
T TIGR00483 86 EVTIVDCPGHR----------DFIKNMITGA--SQADAAVLVVAVGDGEFEVQPQTREHA-FLARTLG---INQLIVAIN 149 (426)
T ss_pred EEEEEECCCHH----------HHHHHHHhhh--hhCCEEEEEEECCCCCcccCCchHHHH-HHHHHcC---CCeEEEEEE
Confidence 99999999962 2223332222 358999999888754211 1111212 2233344 257999999
Q ss_pred ccCCC
Q 000824 761 HAASA 765 (1266)
Q Consensus 761 KaDeL 765 (1266)
|+|..
T Consensus 150 K~Dl~ 154 (426)
T TIGR00483 150 KMDSV 154 (426)
T ss_pred Chhcc
Confidence 99975
No 219
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.39 E-value=3.4e-06 Score=91.31 Aligned_cols=104 Identities=19% Similarity=0.220 Sum_probs=66.9
Q ss_pred cEEEEEccCCCCHHHHHHHHhcC-ccccc-cCcccceeEEEEEEEEE---CCEEEEEEeCCCCCCCccchhchHHHHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDE-VKFGT-DAFQMGTKKVQDVVGTV---QGIKVRVIDTPGLLPSWSDQRQNEKILHSV 709 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr-~vftv-da~rstTre~qei~geI---~GipVtVIDTPGL~DS~gd~~~neeIlkeI 709 (1266)
..|.|+|++++|||||+|.|++. ..|.+ .....||+.+......+ .+..+.++||||+.++.......+..+..+
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l 87 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFAL 87 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHH
Confidence 48999999999999999999998 35554 44678888766555555 358899999999987642221233333333
Q ss_pred HHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHH
Q 000824 710 KRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITD 745 (1266)
Q Consensus 710 KkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~e 745 (1266)
...+ .+++||..... ....+...+..+.+
T Consensus 88 ~~ll----ss~~i~n~~~~---~~~~~~~~l~~~~~ 116 (224)
T cd01851 88 ATLL----SSVLIYNSWET---ILGDDLAALMGLLK 116 (224)
T ss_pred HHHH----hCEEEEeccCc---ccHHHHHHHHHHHH
Confidence 3322 46777775433 33334444444443
No 220
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.39 E-value=3.9e-06 Score=86.31 Aligned_cols=113 Identities=17% Similarity=0.147 Sum_probs=68.9
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+|+|..|||||||++.++... |. ..+.++..........+.+ +.+.|+||||-... ..+. ..+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~-f~-~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~---~~~ 69 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK-FP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY-------DRLR---PLS 69 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CC-CCCCCceeeeeEEEEEECCEEEEEEEEECCCccch-------hhhh---hhh
Confidence 589999999999999999999753 32 2333333322222334556 56789999998431 1111 112
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcH--HHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDM--PLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~--elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+ ...|++++|.+++.. .+.... ..+..+.... ...++|||.||.|..
T Consensus 70 ~--~~a~~~ilv~d~~~~-~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~ 118 (175)
T cd01874 70 Y--PQTDVFLVCFSVVSP-SSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLR 118 (175)
T ss_pred c--ccCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhh
Confidence 2 358999999887643 222222 1333343322 247899999999964
No 221
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.38 E-value=6.1e-07 Score=100.12 Aligned_cols=62 Identities=29% Similarity=0.292 Sum_probs=52.1
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCc
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSW 696 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~ 696 (1266)
...++|+|+|.+||||||+||+|+++..+.++..+++|+..+.+. + +..+.||||||+..+.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIK--L-GKGLELLDTPGILWPK 180 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEE--e-CCcEEEEECCCcCCCC
Confidence 346799999999999999999999998888888889998876443 2 4568999999998653
No 222
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.38 E-value=3e-06 Score=103.64 Aligned_cols=113 Identities=19% Similarity=0.238 Sum_probs=74.8
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCcc-cc---------cc-----CcccceeEEEEEEEEECCEEEEEEeCCCCCCCccch
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVK-FG---------TD-----AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQ 699 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~v-ft---------vd-----a~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~ 699 (1266)
.+|+|+|..++|||||+++|+.... +. .| .-++.|.........+.++++.||||||..+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D----- 76 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD----- 76 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH-----
Confidence 3899999999999999999986321 10 01 1234555555566778999999999999843
Q ss_pred hchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 700 RQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 700 ~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
...++..+++ .+|++++|+++... ........++.+.. ...+.|||+||+|..
T Consensus 77 -----F~~ev~~~l~--~aD~alLVVDa~~G-~~~qT~~~l~~a~~-----~~ip~IVviNKiD~~ 129 (594)
T TIGR01394 77 -----FGGEVERVLG--MVDGVLLLVDASEG-PMPQTRFVLKKALE-----LGLKPIVVINKIDRP 129 (594)
T ss_pred -----HHHHHHHHHH--hCCEEEEEEeCCCC-CcHHHHHHHHHHHH-----CCCCEEEEEECCCCC
Confidence 2223333433 47999999887642 22233344444433 245789999999964
No 223
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.37 E-value=3.1e-06 Score=91.93 Aligned_cols=113 Identities=15% Similarity=0.124 Sum_probs=68.0
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccc----------cC-----cccceeEEEEEEEEEC----------CEEEEEEeC
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGT----------DA-----FQMGTKKVQDVVGTVQ----------GIKVRVIDT 689 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftv----------da-----~rstTre~qei~geI~----------GipVtVIDT 689 (1266)
.+|+++|..+.|||||+.+|+....... +. .++.|.....+...+. +..+.||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 3799999999999999999986532211 10 1222222111111222 678999999
Q ss_pred CCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 690 PGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 690 PGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
||..+- ......++ ..+|++++|+++... .......+++.... . ..+.|+|+||+|..
T Consensus 81 PG~~~f----------~~~~~~~l--~~aD~~ilVvD~~~g-~~~~t~~~l~~~~~---~--~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDF----------SSEVTAAL--RLCDGALVVVDAVEG-VCVQTETVLRQALK---E--RVKPVLVINKIDRL 138 (222)
T ss_pred CCcccc----------HHHHHHHH--HhcCeeEEEEECCCC-CCHHHHHHHHHHHH---c--CCCEEEEEECCCcc
Confidence 998541 11222233 248889999887643 33333344444332 1 35799999999976
No 224
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.37 E-value=7.9e-07 Score=98.63 Aligned_cols=60 Identities=27% Similarity=0.257 Sum_probs=50.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPS 695 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS 695 (1266)
...+|+|+|.+||||||+||+|++.....++..+++|+.++.+. + +..+.||||||+..+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIK--L-SDGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEE--e-CCCEEEEECCCcccC
Confidence 45799999999999999999999998888888888888766443 2 346899999999654
No 225
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.37 E-value=3.4e-06 Score=91.05 Aligned_cols=110 Identities=20% Similarity=0.246 Sum_probs=68.5
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcCccc-cccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHH
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDEVKF-GTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSV 709 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr~vf-tvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeI 709 (1266)
...+..|+|+|++|+|||||+|+|++.... ......+ +.. . ....+..+.++||||.. ..++..+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i~---i-~~~~~~~i~~vDtPg~~---------~~~l~~a 101 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PIT---V-VTGKKRRLTFIECPNDI---------NAMIDIA 101 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cEE---E-EecCCceEEEEeCCchH---------HHHHHHH
Confidence 345679999999999999999999986221 1121221 111 1 12257889999999852 2222222
Q ss_pred HHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCcc-EEEEEeccCCCC
Q 000824 710 KRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFN-AIVVLTHAASAP 766 (1266)
Q Consensus 710 KkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~-tIVVLTKaDeL~ 766 (1266)
...|+++||+++.. .....+..++..+... ..+ +++|+||+|.+.
T Consensus 102 ------k~aDvVllviDa~~-~~~~~~~~i~~~l~~~-----g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 102 ------KVADLVLLLIDASF-GFEMETFEFLNILQVH-----GFPRVMGVLTHLDLFK 147 (225)
T ss_pred ------HhcCEEEEEEecCc-CCCHHHHHHHHHHHHc-----CCCeEEEEEeccccCC
Confidence 23789999987653 2333444555555432 234 456999999774
No 226
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.36 E-value=5.6e-06 Score=87.23 Aligned_cols=116 Identities=15% Similarity=0.148 Sum_probs=71.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
..++|+|+|..||||||++.++.... +.....+..+.+.......+++ +.+.|+||||... ...+. .
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~-------~~~l~---~ 73 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGS-TESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR-------FCTIF---R 73 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHH-------HHHHH---H
Confidence 34799999999999999999998742 2211111222333333344555 6788999999832 11221 2
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
.+. ...|++|+|.+++... +... ...+..|.... -..++|||-||.|..
T Consensus 74 ~~~--~~ad~illVfD~t~~~-Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~ 123 (189)
T cd04121 74 SYS--RGAQGIILVYDITNRW-SFDGIDRWIKEIDEHA---PGVPKILVGNRLHLA 123 (189)
T ss_pred HHh--cCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhC---CCCCEEEEEECccch
Confidence 233 3689999998876432 2122 23444444432 247899999999974
No 227
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.35 E-value=6.6e-07 Score=89.21 Aligned_cols=55 Identities=33% Similarity=0.461 Sum_probs=43.5
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCC
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLL 693 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~ 693 (1266)
+++++|.+||||||++|+|++.....++...++|+..+.+ .+.+ .+.|+||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTI--FLTP-TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEE--EeCC-CEEEEECCCcC
Confidence 8999999999999999999998776666666666654433 2333 68999999985
No 228
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.35 E-value=2.4e-06 Score=91.42 Aligned_cols=116 Identities=10% Similarity=0.122 Sum_probs=67.2
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCccccccCcccce-eEEEEEEEEE--CCEEEEEEeCCCCCCCccchhchHHHHHH
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGT-KKVQDVVGTV--QGIKVRVIDTPGLLPSWSDQRQNEKILHS 708 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstT-re~qei~geI--~GipVtVIDTPGL~DS~gd~~~neeIlke 708 (1266)
...++|+|+|..|||||||++.++... +.. .+.++. .......... ..+.+.++||||...- ..+.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~-f~~-~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~-- 79 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE-FEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLR-- 79 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCC-CCC-ccCCccceeEEEEEEEECCeEEEEEEEECCCchhh-------hhhh--
Confidence 346799999999999999999987542 211 111111 1222222222 2368899999997421 1111
Q ss_pred HHHhhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 709 VKRFIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 709 IKkfLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
..+. ...+++|+|.+++... +... ...++.|.+.. ...++++|.||+|..
T Consensus 80 -~~~~--~~~~~~ilvfD~~~~~-s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~ 130 (219)
T PLN03071 80 -DGYY--IHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVK 130 (219)
T ss_pred -HHHc--ccccEEEEEEeCCCHH-HHHHHHHHHHHHHHhC---CCCcEEEEEEchhhh
Confidence 1122 3578899997776431 1111 12333444332 247899999999964
No 229
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.35 E-value=1.9e-06 Score=86.47 Aligned_cols=114 Identities=11% Similarity=0.133 Sum_probs=65.6
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+|+|++|||||||++.+++..-. ..+.++..........+.+ +.+.++||||..+.. . +..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~----~~~- 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD-------R----LRP- 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEECCEEEEEEEEeCCCchhhh-------h----ccc-
Confidence 58999999999999999999985321 1122222111112223444 467899999974210 0 110
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcH--HHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDM--PLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~--elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
......|++++|..++... +.... ..+..+.... ...++++|.||+|...
T Consensus 68 ~~~~~~d~~i~v~~~~~~~-s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 119 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRN 119 (175)
T ss_pred cccCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhC---CCCCEEEEeeChhccc
Confidence 1124578899887776421 11111 1223333221 2478999999999753
No 230
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.34 E-value=2.5e-06 Score=88.47 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=66.8
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
.+|+|+|.+|||||||++.+++..... .+.++..........+.+ +.+.|+||||-..- ..+..
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~-----------~~l~~- 66 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ--VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEF-----------DRLRS- 66 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCcceeeeEEEEEECCEEEEEEEEECCCChhc-----------ccccc-
Confidence 379999999999999999999764321 122221111111223344 57899999997321 01111
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcH--HHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDM--PLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~--elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.....+|++++|.+++... +.... ..+..+.... ...++++|.||+|...
T Consensus 67 ~~~~~a~~~ilv~dv~~~~-sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~ 118 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPD-SLENVESKWLGEIREHC---PGVKLVLVALKCDLRE 118 (189)
T ss_pred ccccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcc
Confidence 1123578999997776431 11111 2344444322 2478999999999753
No 231
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.34 E-value=5e-06 Score=102.08 Aligned_cols=115 Identities=19% Similarity=0.100 Sum_probs=73.8
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCcc--ccccCcccceeEEEEEEEEE-CCEEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVK--FGTDAFQMGTKKVQDVVGTV-QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~v--ftvda~rstTre~qei~geI-~GipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
+.|.++|..++|||||+|+|+|... +.....++.|.+....+... .+..+.||||||.. .+.+.+..
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe----------~fi~~m~~ 70 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE----------KFLSNMLA 70 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH----------HHHHHHHH
Confidence 3689999999999999999998532 22222345555443223222 56789999999972 23333333
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.+ ..+|++++|++++.. ....+.+.+..+. .+| ..+.|||+||+|...
T Consensus 71 g~--~~~D~~lLVVda~eg-~~~qT~ehl~il~-~lg---i~~iIVVlNKiDlv~ 118 (614)
T PRK10512 71 GV--GGIDHALLVVACDDG-VMAQTREHLAILQ-LTG---NPMLTVALTKADRVD 118 (614)
T ss_pred Hh--hcCCEEEEEEECCCC-CcHHHHHHHHHHH-HcC---CCeEEEEEECCccCC
Confidence 22 358999999887642 3344455555443 333 245789999999753
No 232
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.34 E-value=3.3e-06 Score=91.36 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=67.8
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIK 714 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk 714 (1266)
++|+|+|..|||||||++.++...... .. .|.........+..+.+.|+||||...- ..+. ..++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~~--~Tig~~~~~~~~~~~~l~iwDt~G~e~~-------~~l~---~~~~- 65 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD--TV--STVGGAFYLKQWGPYNISIWDTAGREQF-------HGLG---SMYC- 65 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC--CC--CccceEEEEEEeeEEEEEEEeCCCcccc-------hhhH---HHHh-
Confidence 479999999999999999999865322 11 1221111222345678999999997321 1111 1122
Q ss_pred cCCCCEEEEEeecCCCCCCCCcH-HHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 715 KTPPDIVLYLDRLDMQNRDFSDM-PLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 715 ~~~pDVVLLVIrld~~r~d~eD~-elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
...|++|+|.+++.. .+.... ..+..+.+... ...++|||.||+|+..
T Consensus 66 -~~ad~~IlV~Dvt~~-~Sf~~l~~~~~~l~~~~~--~~~piIlVgNK~DL~~ 114 (220)
T cd04126 66 -RGAAAVILTYDVSNV-QSLEELEDRFLGLTDTAN--EDCLFAVVGNKLDLTE 114 (220)
T ss_pred -ccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 358999999887643 121221 12233333222 2367999999999754
No 233
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.33 E-value=1.1e-06 Score=101.30 Aligned_cols=89 Identities=24% Similarity=0.240 Sum_probs=58.8
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCc-----cccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEV-----KFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHS 708 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~-----vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlke 708 (1266)
...|+|||.||||||||||+|++.. .++++.++++|+....+. + +..+.||||||+.... +....-..++
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~--~-~~~~~l~DtPG~~~~~--~~~~~l~~~~ 228 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP--L-DDGHSLYDTPGIINSH--QMAHYLDKKD 228 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE--e-CCCCEEEECCCCCChh--HhhhhcCHHH
Confidence 3699999999999999999999853 466778888898766543 3 2346899999997541 1111111123
Q ss_pred HHHhhhcCCCCEEEEEeec
Q 000824 709 VKRFIKKTPPDIVLYLDRL 727 (1266)
Q Consensus 709 IKkfLk~~~pDVVLLVIrl 727 (1266)
++.......+..+.|+++.
T Consensus 229 l~~~~~~~~i~~~~~~l~~ 247 (360)
T TIGR03597 229 LKYITPKKEIKPKTYQLNP 247 (360)
T ss_pred HhhcCCCCccCceEEEeCC
Confidence 3333334456666676543
No 234
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.33 E-value=3.6e-06 Score=102.85 Aligned_cols=114 Identities=17% Similarity=0.098 Sum_probs=67.8
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE------------------CCEEEEEEeCCCCCCC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV------------------QGIKVRVIDTPGLLPS 695 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI------------------~GipVtVIDTPGL~DS 695 (1266)
+..|+++|.+++|||||+|+|.+..... ......|+..-..+..+ ...++.|+||||...
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~-~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~- 81 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAK-REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA- 81 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccc-ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh-
Confidence 4689999999999999999999874432 11122222111111000 012489999999732
Q ss_pred ccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 696 WSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 696 ~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
. ..+ ...+. ...|++++|++++.. ....+...+..+.. ...++++++||+|...
T Consensus 82 ----f--~~l---~~~~~--~~aD~~IlVvD~~~g-~~~qt~e~i~~l~~-----~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 82 ----F--TNL---RKRGG--ALADLAILIVDINEG-FKPQTQEALNILRM-----YKTPFVVAANKIDRIP 135 (590)
T ss_pred ----H--HHH---HHHHH--hhCCEEEEEEECCcC-CCHhHHHHHHHHHH-----cCCCEEEEEECCCccc
Confidence 1 111 11122 358999999887642 33334444544432 2468999999999763
No 235
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.32 E-value=7.6e-06 Score=84.09 Aligned_cols=113 Identities=17% Similarity=0.143 Sum_probs=67.6
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+|+|.+|||||||+..++... +. ..+.++..........+.+ +.+.++||||...- ..+. ..+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~-f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~---~~~ 69 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA-FP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-------DRLR---PLS 69 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CC-CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhh-------hhhh---hhh
Confidence 589999999999999999998753 22 1233333222222334555 56789999996321 1111 112
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcH--HHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDM--PLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~--elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+ ...|++|+|.+++.. -+.... ..++.+.... ...+++||.||.|..
T Consensus 70 ~--~~~d~~ilv~d~~~~-~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~ 118 (174)
T cd01871 70 Y--PQTDVFLICFSLVSP-ASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLR 118 (174)
T ss_pred c--CCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhc
Confidence 2 368999999887642 111121 1233333321 247899999999964
No 236
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.31 E-value=1.4e-06 Score=95.51 Aligned_cols=80 Identities=23% Similarity=0.252 Sum_probs=51.4
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCc-------ccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHH--
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAF-------QMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKI-- 705 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~-------rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeI-- 705 (1266)
..++|+|++|||||||||+|++.....+... +.||+....+.. .+ -.||||||+..-.......+++
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~~l~~~~~~~~~~ 196 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEFGLWHLEPEQLTQ 196 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccccCCCCCCHHHHHH
Confidence 4899999999999999999999765544332 235665544443 22 3799999997643322332333
Q ss_pred -HHHHHHhhhcCCC
Q 000824 706 -LHSVKRFIKKTPP 718 (1266)
Q Consensus 706 -lkeIKkfLk~~~p 718 (1266)
..++..+...|++
T Consensus 197 ~f~e~~~~~~~C~f 210 (245)
T TIGR00157 197 GFVEFRDYLGECKF 210 (245)
T ss_pred hCHHHHHHhCCCCC
Confidence 3455555555443
No 237
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.30 E-value=1.2e-06 Score=97.79 Aligned_cols=167 Identities=18% Similarity=0.212 Sum_probs=95.8
Q ss_pred HHHHHHHHcchhHHHHhhhcCCCCC-c-----chhHH-HHHHHHHHHhCCC---CCCCccEEEEEccCCCCHHHHHHHHh
Q 000824 586 VVAQVLYRLGLAEQLRGRNGGRVGA-F-----SFDRA-SAMAEQLEAAGQE---PLDFSCTIMVLGKTGVGKSATINSIF 655 (1266)
Q Consensus 586 ~laQvLyrLgLaE~Li~~~~~rL~~-f-----s~d~a-~~LaeqLe~~~~e---~lk~slrILLVGpTGVGKSTLINSLL 655 (1266)
.++..|...++.+.++.++.+.... | ..+.. ..+.+.+...-.. ..+..-+|+|+|++|+||||++..|+
T Consensus 17 ~~~~~l~~~dv~~~~~~~l~~~~~i~f~~~~~~~~~vl~~v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~ 96 (270)
T PRK06731 17 KVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMA 96 (270)
T ss_pred HHHHHHHHcCCCHHHHHHHhhcceEEecCCCccccHHHHHHhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHH
Confidence 4666777778877777777654311 1 11111 1111211111110 01134699999999999999999987
Q ss_pred cCc------c--ccccCcccceeEEE---------EEEE---------------EECCEEEEEEeCCCCCCCccchhchH
Q 000824 656 DEV------K--FGTDAFQMGTKKVQ---------DVVG---------------TVQGIKVRVIDTPGLLPSWSDQRQNE 703 (1266)
Q Consensus 656 Gr~------v--ftvda~rstTre~q---------ei~g---------------eI~GipVtVIDTPGL~DS~gd~~~ne 703 (1266)
+.. + +..+.++.....+. .... ...+..++||||||... .+.
T Consensus 97 ~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~------~~~ 170 (270)
T PRK06731 97 WQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNY------RAS 170 (270)
T ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCc------CCH
Confidence 641 1 22333332111000 0000 11256789999999853 235
Q ss_pred HHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 704 KILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 704 eIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
..++++.+++....++.+++|++++.... + +..+.+.|.. ....-+||||.|+..
T Consensus 171 ~~l~el~~~~~~~~~~~~~LVl~a~~~~~---d---~~~~~~~f~~--~~~~~~I~TKlDet~ 225 (270)
T PRK06731 171 ETVEEMIETMGQVEPDYICLTLSASMKSK---D---MIEIITNFKD--IHIDGIVFTKFDETA 225 (270)
T ss_pred HHHHHHHHHHhhhCCCeEEEEEcCccCHH---H---HHHHHHHhCC--CCCCEEEEEeecCCC
Confidence 56777777777777888999987764321 1 3445555654 455678999999875
No 238
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.30 E-value=8.2e-07 Score=101.08 Aligned_cols=61 Identities=28% Similarity=0.332 Sum_probs=53.0
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCC
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPS 695 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS 695 (1266)
....++++||-|||||||+||+|+++..+.++.+++.|+..+.+.. ...+.++||||+.-.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~---~~~i~LlDtPGii~~ 190 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKL---DDGIYLLDTPGIIPP 190 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEc---CCCeEEecCCCcCCC
Confidence 3467899999999999999999999999999999999998877763 334899999999865
No 239
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.30 E-value=2.4e-07 Score=96.47 Aligned_cols=59 Identities=32% Similarity=0.379 Sum_probs=35.2
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCc-------ccceeEEEEEEEEECCEEEEEEeCCCCCCCc
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAF-------QMGTKKVQDVVGTVQGIKVRVIDTPGLLPSW 696 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~-------rstTre~qei~geI~GipVtVIDTPGL~DS~ 696 (1266)
.+++|+|++|||||||||+|++...+.+... +-||+....+ .+ .....|||||||.+-.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~--~l-~~g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELF--PL-PDGGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEE--EE-TTSEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEE--ec-CCCcEEEECCCCCccc
Confidence 5999999999999999999999865544322 2233322222 22 1235799999997643
No 240
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.30 E-value=1.2e-06 Score=90.00 Aligned_cols=58 Identities=29% Similarity=0.279 Sum_probs=47.5
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLL 693 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~ 693 (1266)
..++|+++|.+||||||++|.|++.....++...++|...+.+.. . ..+.||||||+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~--~-~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKI--S-PGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEe--c-CCEEEEECCCCC
Confidence 357999999999999999999999877677777788877665543 2 568999999984
No 241
>PRK12288 GTPase RsgA; Reviewed
Probab=98.30 E-value=1.5e-06 Score=100.04 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=49.7
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCccc-------ceeEEEEEEEEECCEEEEEEeCCCCCCCccchhc---hHHH
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQM-------GTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQ---NEKI 705 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rs-------tTre~qei~geI~GipVtVIDTPGL~DS~gd~~~---neeI 705 (1266)
.++|+|++|||||||||+|+++..+.+...+. ||+...-+... .| ..|||||||..-...... -...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~-~~--~~liDTPGir~~~l~~~~~~~l~~~ 283 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP-HG--GDLIDSPGVREFGLWHLEPEQVTQG 283 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec-CC--CEEEECCCCCcccCCCCCHHHHHHh
Confidence 58999999999999999999987766654432 44443333221 12 359999999764322222 2334
Q ss_pred HHHHHHhhhcCC
Q 000824 706 LHSVKRFIKKTP 717 (1266)
Q Consensus 706 lkeIKkfLk~~~ 717 (1266)
..+|..+...|+
T Consensus 284 F~ei~~~~~~Cr 295 (347)
T PRK12288 284 FVEFRDYLGTCK 295 (347)
T ss_pred hHHHHHHhcCCC
Confidence 445555555544
No 242
>PRK10218 GTP-binding protein; Provisional
Probab=98.30 E-value=5.9e-06 Score=101.38 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=74.5
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCcc-ccc---------c-----CcccceeEEEEEEEEECCEEEEEEeCCCCCCCccch
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVK-FGT---------D-----AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQ 699 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~v-ftv---------d-----a~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~ 699 (1266)
.+|+++|..++|||||+++|+.... |.. | ..++.|.........+.++++.+|||||..+-
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df---- 81 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF---- 81 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh----
Confidence 5899999999999999999996421 111 0 12344555555666778999999999998542
Q ss_pred hchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 700 RQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 700 ~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
...+..+++ .+|++++|+++... ........++.+.. ...+.||++||+|..
T Consensus 82 ------~~~v~~~l~--~aDg~ILVVDa~~G-~~~qt~~~l~~a~~-----~gip~IVviNKiD~~ 133 (607)
T PRK10218 82 ------GGEVERVMS--MVDSVLLVVDAFDG-PMPQTRFVTKKAFA-----YGLKPIVVINKVDRP 133 (607)
T ss_pred ------HHHHHHHHH--hCCEEEEEEecccC-ccHHHHHHHHHHHH-----cCCCEEEEEECcCCC
Confidence 112223332 48999999887642 22233444544433 246789999999964
No 243
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.28 E-value=3.3e-06 Score=98.96 Aligned_cols=127 Identities=14% Similarity=0.093 Sum_probs=75.9
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC----ccc-----------cccCccc---ceeEEEE---EEEEE-CC----EEEEEE
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE----VKF-----------GTDAFQM---GTKKVQD---VVGTV-QG----IKVRVI 687 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr----~vf-----------tvda~rs---tTre~qe---i~geI-~G----ipVtVI 687 (1266)
.+.|.|+||.++|||||||++++. .+. ..++..+ +|++... ...++ .. .++++|
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 469999999999999999999998 333 2333334 5655443 22222 22 689999
Q ss_pred eCCCCCCCccc-hhchHH----------------HHHH--HHHhhhcCCCCEEEEEe-ecC--C---CCCCCCcHHHHHH
Q 000824 688 DTPGLLPSWSD-QRQNEK----------------ILHS--VKRFIKKTPPDIVLYLD-RLD--M---QNRDFSDMPLLRT 742 (1266)
Q Consensus 688 DTPGL~DS~gd-~~~nee----------------Ilke--IKkfLk~~~pDVVLLVI-rld--~---~r~d~eD~elLK~ 742 (1266)
||+|+.+...- ....++ -..+ .++.+. ...++.|+|. +.+ . ......+.+++..
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~-dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ-EHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH-hcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99999774211 111122 0000 111221 2466666664 221 0 1223346677777
Q ss_pred HHHHhCCCCCccEEEEEeccCCCC
Q 000824 743 ITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 743 I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
|++. .++.++|+|++|-..
T Consensus 176 Lk~~-----~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 176 LKEL-----NKPFIILLNSTHPYH 194 (492)
T ss_pred HHhc-----CCCEEEEEECcCCCC
Confidence 7765 789999999999543
No 244
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.27 E-value=9e-06 Score=84.52 Aligned_cols=113 Identities=14% Similarity=0.183 Sum_probs=65.4
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccce-eEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGT-KKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstT-re~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
++|+++|..||||||+++.++... |.. .+.++. .........+.+ +.+.|+||+|-..- ..+ ...
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~-f~~-~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~-------~~~---~~~ 68 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGE-FDE-DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREF-------INM---LPL 68 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCchhH-------HHh---hHH
Confidence 479999999999999999998753 222 222221 233333344555 56789999997321 111 111
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCcH-HHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSDM-PLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD~-elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+ ....|++++|.+++.. .+..+. ..+..+... ... ..+ |+|.||+|..
T Consensus 69 ~--~~~a~~iilv~D~t~~-~s~~~i~~~~~~~~~~-~~~-~~p-ilVgnK~Dl~ 117 (182)
T cd04128 69 V--CNDAVAILFMFDLTRK-STLNSIKEWYRQARGF-NKT-AIP-ILVGTKYDLF 117 (182)
T ss_pred H--CcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHh-CCC-CCE-EEEEEchhcc
Confidence 2 2358999999887643 111111 233333332 121 234 6889999975
No 245
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.26 E-value=1.9e-05 Score=93.66 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=75.4
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCcc-------------------------ccccC-----cccceeEEEEEEEEECC
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVK-------------------------FGTDA-----FQMGTKKVQDVVGTVQG 681 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~v-------------------------ftvda-----~rstTre~qei~geI~G 681 (1266)
+..++|+++|..++|||||+..|+...- +..+. .++.|.+.......+.+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 3468999999999999999999875210 01111 24556666556667788
Q ss_pred EEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCC------CCCcHHHHHHHHHHhCCCCCccE
Q 000824 682 IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNR------DFSDMPLLRTITDIFGPSIWFNA 755 (1266)
Q Consensus 682 ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~------d~eD~elLK~I~eiFG~ei~k~t 755 (1266)
..++||||||.. +....+...+ ..+|++++|++++..-+ .....+.+..+ ..+| .+++
T Consensus 85 ~~i~lIDtPGh~----------~f~~~~~~g~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~~g---i~~i 148 (446)
T PTZ00141 85 YYFTIIDAPGHR----------DFIKNMITGT--SQADVAILVVASTAGEFEAGISKDGQTREHALLA-FTLG---VKQM 148 (446)
T ss_pred eEEEEEECCChH----------HHHHHHHHhh--hhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HHcC---CCeE
Confidence 999999999963 2233333322 35899999988764321 12233334433 3333 3568
Q ss_pred EEEEeccCC
Q 000824 756 IVVLTHAAS 764 (1266)
Q Consensus 756 IVVLTKaDe 764 (1266)
||++||+|.
T Consensus 149 iv~vNKmD~ 157 (446)
T PTZ00141 149 IVCINKMDD 157 (446)
T ss_pred EEEEEcccc
Confidence 899999995
No 246
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.25 E-value=1e-05 Score=84.01 Aligned_cols=113 Identities=15% Similarity=0.186 Sum_probs=67.6
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+|+|..|||||||++.+++.. |.. .+.++..........+.+ +.+.|+||||-..- . .+...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~-f~~-~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~-------~----~~~~~ 68 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC-YPE-TYVPTVFENYTASFEIDEQRIELSLWDTSGSPYY-------D----NVRPL 68 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CCC-CcCCceEEEEEEEEEECCEEEEEEEEECCCchhh-------h----hcchh
Confidence 589999999999999999999763 322 233332222222234444 56789999996311 1 11111
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc--HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD--MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD--~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
-....|++|+|.+++.. .+... ...+..+.+... ..++++|.||+|+.
T Consensus 69 -~~~~a~~~ilvfdit~~-~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~ 118 (178)
T cd04131 69 -CYPDSDAVLICFDISRP-ETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLR 118 (178)
T ss_pred -hcCCCCEEEEEEECCCh-hhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhh
Confidence 12368999999887643 22222 123334444322 46899999999963
No 247
>PRK12289 GTPase RsgA; Reviewed
Probab=98.25 E-value=1.5e-06 Score=100.22 Aligned_cols=57 Identities=30% Similarity=0.413 Sum_probs=42.7
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCccc-------ceeEEEEEEEEECCEEEEEEeCCCCCCC
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQM-------GTKKVQDVVGTVQGIKVRVIDTPGLLPS 695 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rs-------tTre~qei~geI~GipVtVIDTPGL~DS 695 (1266)
.++|+|++|||||||||+|++.....++..+. ||+....+... .| ..|||||||...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~-~g--~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELP-NG--GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECC-CC--cEEEeCCCcccc
Confidence 68999999999999999999987776665555 66665433221 23 279999999764
No 248
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.23 E-value=2.8e-06 Score=96.24 Aligned_cols=125 Identities=15% Similarity=0.181 Sum_probs=79.4
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCE-EEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGI-KVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~Gi-pVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
..|-|||-+|+|||||+|+|....- .+..|..||.....-...+.+. .++|.|.||++..+ ..++.+-...-+++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GA---h~nkGlG~~FLrHi 272 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGA---HMNKGLGYKFLRHI 272 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccc---cccCcccHHHHHHH
Confidence 4678999999999999999998644 5566777777665544444443 49999999998754 22332222222233
Q ss_pred hcCCCCEEEEEeecCCCCC-CC-CcHHHHHHHHHHhCC-CCCccEEEEEeccCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNR-DF-SDMPLLRTITDIFGP-SIWFNAIVVLTHAASA 765 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~-d~-eD~elLK~I~eiFG~-ei~k~tIVVLTKaDeL 765 (1266)
. +...++||+++..... .+ .+.++|..=.+.+.. -..++.+||.||+|..
T Consensus 273 E--R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 273 E--RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred H--hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 2 4677899988765422 21 222333222233333 3457799999999964
No 249
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.23 E-value=1.4e-05 Score=79.21 Aligned_cols=115 Identities=18% Similarity=0.205 Sum_probs=70.4
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccce-eEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGT-KKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstT-re~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
+|+|+|..|||||||++.+.+.. +.. .+.++. .+.......+.+ +.+.++||+|-.. ...+.. .+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~-~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~-------~~~~~~---~~ 68 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE-FPE-NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQER-------FDSLRD---IF 68 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS-TTS-SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGG-------GHHHHH---HH
T ss_pred CEEEECCCCCCHHHHHHHHHhhc-ccc-cccccccccccccccccccccccccccccccccc-------cccccc---cc
Confidence 58999999999999999999863 322 232222 344444445555 4589999999621 111111 12
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
....|++++|.+++...--..-...+..+..... ...+++||.||.|...
T Consensus 69 --~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 69 --YRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSD 118 (162)
T ss_dssp --HTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGG
T ss_pred --cccccccccccccccccccccccccccccccccc--ccccceeeeccccccc
Confidence 2358899999777643111112244555555544 2368999999999653
No 250
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.23 E-value=2.5e-06 Score=88.05 Aligned_cols=115 Identities=13% Similarity=0.150 Sum_probs=73.7
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
+...+|+++|+.|+||||+++.|.......+ ..|.........+.+..+.++|.+|-..- ..++ +.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~----~pT~g~~~~~i~~~~~~~~~~d~gG~~~~-------~~~w---~~ 77 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISET----IPTIGFNIEEIKYKGYSLTIWDLGGQESF-------RPLW---KS 77 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEE----EEESSEEEEEEEETTEEEEEEEESSSGGG-------GGGG---GG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccccc----CcccccccceeeeCcEEEEEEeccccccc-------cccc---ee
Confidence 4578999999999999999999997543321 11323334445668999999999985210 1111 12
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCC--CCCccEEEEEeccCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGP--SIWFNAIVVLTHAASA 765 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~--ei~k~tIVVLTKaDeL 765 (1266)
|. ..+|+++||++.....+- .+..+.|.+++.. -...+++|++||.|..
T Consensus 78 y~--~~~~~iIfVvDssd~~~l---~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 78 YF--QNADGIIFVVDSSDPERL---QEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp GH--TTESEEEEEEETTGGGGH---HHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred ec--cccceeEEEEecccceee---cccccchhhhcchhhcccceEEEEecccccc
Confidence 32 257999999877643221 2233344444443 2257999999999964
No 251
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.23 E-value=1.4e-05 Score=83.43 Aligned_cols=117 Identities=16% Similarity=0.147 Sum_probs=68.8
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEEC--CEEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQ--GIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~--GipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+++|..||||||++|++.+.................. ..... .+.+.++||+|..+ -..++ ..+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~~~~Dt~gq~~-------~~~~~---~~y 74 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAK-TIEPYRRNIKLQLWDTAGQEE-------YRSLR---PEY 74 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEE-EEEeCCCEEEEEeecCCCHHH-------HHHHH---HHH
Confidence 7999999999999999999998754332221112211111 11122 46789999999832 11111 122
Q ss_pred hhcCCCCEEEEEeecCCCCC-CCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNR-DFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~-d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
..+++.+++|.+.+.... ...-...+..+....+ ...++++|.||.|...
T Consensus 75 --~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 75 --YRGANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFD 125 (219)
T ss_pred --hcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEeccccccc
Confidence 235788888866654222 2122233334444332 2478999999999864
No 252
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.22 E-value=1e-05 Score=99.04 Aligned_cols=113 Identities=18% Similarity=0.122 Sum_probs=68.6
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccc---------cC-----cccceeEEEEEEEEE---CC--EEEEEEeCCCCCCC
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGT---------DA-----FQMGTKKVQDVVGTV---QG--IKVRVIDTPGLLPS 695 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftv---------da-----~rstTre~qei~geI---~G--ipVtVIDTPGL~DS 695 (1266)
.+|+|+|..++|||||++.|+......+ +. .++.|.........+ ++ +.+.||||||..+-
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 4899999999999999999987532111 11 124444433333333 22 78999999999531
Q ss_pred ccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 696 WSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 696 ~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
...+..++. .+|++|+|++++.. ........+..+.. ...++|+|+||+|..
T Consensus 84 ----------~~~v~~~l~--~aD~aILVvDat~g-~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~ 135 (595)
T TIGR01393 84 ----------SYEVSRSLA--ACEGALLLVDAAQG-IEAQTLANVYLALE-----NDLEIIPVINKIDLP 135 (595)
T ss_pred ----------HHHHHHHHH--hCCEEEEEecCCCC-CCHhHHHHHHHHHH-----cCCCEEEEEECcCCC
Confidence 122333443 47899999877642 22222222222221 245799999999963
No 253
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.21 E-value=5.7e-06 Score=94.39 Aligned_cols=86 Identities=20% Similarity=0.234 Sum_probs=57.3
Q ss_pred EEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEE------------------------ECCEEEEEEeCCCC
Q 000824 637 IMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGT------------------------VQGIKVRVIDTPGL 692 (1266)
Q Consensus 637 ILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~ge------------------------I~GipVtVIDTPGL 692 (1266)
|.|+|.++||||||+|+|++.. +.+..|+.+|.+....... ...+++.++||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5799999999999999999875 4566677777554432221 13368999999999
Q ss_pred CCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecC
Q 000824 693 LPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLD 728 (1266)
Q Consensus 693 ~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld 728 (1266)
...+. ....+-..+-.+++ .+|++++|+++.
T Consensus 80 v~ga~---~~~glg~~fL~~ir--~aD~ii~Vvd~~ 110 (318)
T cd01899 80 VPGAH---EGKGLGNKFLDDLR--DADALIHVVDAS 110 (318)
T ss_pred CCCcc---chhhHHHHHHHHHH--HCCEEEEEEeCC
Confidence 75421 11222222222233 489999998875
No 254
>PRK13351 elongation factor G; Reviewed
Probab=98.20 E-value=9.3e-06 Score=100.58 Aligned_cols=114 Identities=15% Similarity=0.071 Sum_probs=73.1
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccc------------cccC-----cccceeEEEEEEEEECCEEEEEEeCCCCCCCc
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKF------------GTDA-----FQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSW 696 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vf------------tvda-----~rstTre~qei~geI~GipVtVIDTPGL~DS~ 696 (1266)
-.+|+|+|..|+|||||++.|+..... ..+. .++.|.........+.+..+.||||||..+-
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df- 86 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF- 86 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH-
Confidence 469999999999999999999853211 1111 1233444444556678999999999998531
Q ss_pred cchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 697 SDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 697 gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
......+++ ..|++++|++++.. ........++.+.. ...+.++|+||+|..
T Consensus 87 ---------~~~~~~~l~--~aD~~ilVvd~~~~-~~~~~~~~~~~~~~-----~~~p~iiviNK~D~~ 138 (687)
T PRK13351 87 ---------TGEVERSLR--VLDGAVVVFDAVTG-VQPQTETVWRQADR-----YGIPRLIFINKMDRV 138 (687)
T ss_pred ---------HHHHHHHHH--hCCEEEEEEeCCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECCCCC
Confidence 112223333 47889999877642 22233344444332 246899999999965
No 255
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.19 E-value=1e-05 Score=83.69 Aligned_cols=113 Identities=11% Similarity=0.134 Sum_probs=65.3
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
.+|+|+|+.|+|||||+|.|+..... ..+..+..........+.+ +.+.++||||..... .+ ..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-------~~-~~---- 67 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP--EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYE-------RL-RP---- 67 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcccceEEEEEEECCEEEEEEEEECCCChhcc-------cc-ch----
Confidence 48999999999999999999853221 1222222221222233444 457899999974321 00 00
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcH--HHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDM--PLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~--elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
......|++++|..++... ..... ..+..+..... ..++++|.||+|..
T Consensus 68 ~~~~~a~~~llv~~i~~~~-s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~ 118 (187)
T cd04129 68 LSYSKAHVILIGFAVDTPD-SLENVRTKWIEEVRRYCP---NVPVILVGLKKDLR 118 (187)
T ss_pred hhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhh
Confidence 1124578899887776432 11111 23444443322 37899999999964
No 256
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.18 E-value=6.6e-06 Score=97.47 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=76.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcC------cc--ccccCcccceeEEE---------EEEEE----------------E
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDE------VK--FGTDAFQMGTKKVQ---------DVVGT----------------V 679 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr------~v--ftvda~rstTre~q---------ei~ge----------------I 679 (1266)
.+..|+|+|++|+|||||+.+|+.. .+ +..|.+++++.++. ..+.. .
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 4678999999999999999998752 12 23455555321100 01110 1
Q ss_pred CCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEE
Q 000824 680 QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVL 759 (1266)
Q Consensus 680 ~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVL 759 (1266)
....++||||||... .++..+.+++.+.....+|.+++|++++.. ...+..+.. |... ....-+|+
T Consensus 174 ~~~DvVIIDTAGr~~------~d~~lm~El~~l~~~~~pdevlLVvda~~g------q~av~~a~~-F~~~-l~i~gvIl 239 (437)
T PRK00771 174 KKADVIIVDTAGRHA------LEEDLIEEMKEIKEAVKPDEVLLVIDATIG------QQAKNQAKA-FHEA-VGIGGIII 239 (437)
T ss_pred hcCCEEEEECCCccc------chHHHHHHHHHHHHHhcccceeEEEecccc------HHHHHHHHH-HHhc-CCCCEEEE
Confidence 234789999999853 356777888877666678999999877542 233444333 4432 23456889
Q ss_pred eccCCCC
Q 000824 760 THAASAP 766 (1266)
Q Consensus 760 TKaDeL~ 766 (1266)
||.|...
T Consensus 240 TKlD~~a 246 (437)
T PRK00771 240 TKLDGTA 246 (437)
T ss_pred ecccCCC
Confidence 9999753
No 257
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.18 E-value=1.9e-05 Score=82.57 Aligned_cols=115 Identities=17% Similarity=0.227 Sum_probs=69.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
..++|+++|..|||||||++.++... |.. .+.++..........+.+ +.+.|+||+|-.. ...+.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~-f~~-~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~-----------~~~~~ 70 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDC-FPE-NYVPTVFENYTASFEIDTQRIELSLWDTSGSPY-----------YDNVR 70 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC-CCC-ccCCceeeeeEEEEEECCEEEEEEEEECCCchh-----------hHhhh
Confidence 35789999999999999999998753 221 222222222222334444 5688999999621 11121
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCc--HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSD--MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD--~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
. +.....|++++|.+++.. .+... ...+..+.+.. + ..+++||.||+|+.
T Consensus 71 ~-~~~~~ad~~ilvyDit~~-~Sf~~~~~~w~~~i~~~~-~--~~piilVgNK~DL~ 122 (182)
T cd04172 71 P-LSYPDSDAVLICFDISRP-ETLDSVLKKWKGEIQEFC-P--NTKMLLVGCKSDLR 122 (182)
T ss_pred h-hhcCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHHC-C--CCCEEEEeEChhhh
Confidence 1 113468999999887643 22222 12334444432 2 46899999999963
No 258
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.16 E-value=1.6e-05 Score=97.30 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=66.4
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEE----------E--------EECCEEEEEEeCCCCCC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVV----------G--------TVQGIKVRVIDTPGLLP 694 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~----------g--------eI~GipVtVIDTPGL~D 694 (1266)
++..|.++|.+|+|||||+|+|.+...... .....|+..-..+ + .+.-..++|+||||..+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~-~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAK-EAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccC-CCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 356899999999999999999988643221 1111111110000 0 00001278999999842
Q ss_pred CccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 695 SWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 695 S~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
- ..+ ..... ...|+++||++++.. ........+..+.. ...++++++||+|..
T Consensus 84 f-------~~~---~~~~~--~~aD~~IlVvDa~~g-~~~qt~e~i~~~~~-----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 F-------TNL---RKRGG--ALADIAILVVDINEG-FQPQTIEAINILKR-----RKTPFVVAANKIDRI 136 (586)
T ss_pred H-------HHH---HHHhH--hhCCEEEEEEECCCC-CCHhHHHHHHHHHH-----cCCCEEEEEECcCCc
Confidence 1 111 11111 348899999887642 33344444544432 246799999999975
No 259
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.15 E-value=1.9e-05 Score=95.58 Aligned_cols=115 Identities=11% Similarity=0.021 Sum_probs=71.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCcccc---------------c-cC-----cccceeEEEEEEEEECCEEEEEEeCCC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFG---------------T-DA-----FQMGTKKVQDVVGTVQGIKVRVIDTPG 691 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vft---------------v-da-----~rstTre~qei~geI~GipVtVIDTPG 691 (1266)
.-.+|+|+|..|+|||||+++|+-...++ + +. .++.+.........+.+..+.|+||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 34699999999999999999986321110 0 10 112233334455667899999999999
Q ss_pred CCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 692 LLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 692 L~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
..+ .......++. .+|++|+|+++... .......+++.+ .. ...++++++||+|..
T Consensus 90 ~~d----------f~~~~~~~l~--~aD~aIlVvDa~~g-v~~~t~~l~~~~-~~----~~~PiivviNKiD~~ 145 (527)
T TIGR00503 90 HED----------FSEDTYRTLT--AVDNCLMVIDAAKG-VETRTRKLMEVT-RL----RDTPIFTFMNKLDRD 145 (527)
T ss_pred hhh----------HHHHHHHHHH--hCCEEEEEEECCCC-CCHHHHHHHHHH-Hh----cCCCEEEEEECcccc
Confidence 842 1122222332 48999999887542 322223333322 22 247899999999964
No 260
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.15 E-value=9.4e-06 Score=95.07 Aligned_cols=88 Identities=22% Similarity=0.221 Sum_probs=58.4
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEE------------------------ECCEEEEEEeCC
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGT------------------------VQGIKVRVIDTP 690 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~ge------------------------I~GipVtVIDTP 690 (1266)
++|.|||.+||||||++|+|++... .+..|+.+|.++...... +...++.|+|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 5899999999999999999998753 556677777655442211 123678999999
Q ss_pred CCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecC
Q 000824 691 GLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLD 728 (1266)
Q Consensus 691 GL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld 728 (1266)
|+..... ....+-..+-..++ ..|++++|+++.
T Consensus 81 Gl~~ga~---~g~glg~~fL~~ir--~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAH---EGRGLGNQFLDDLR--QADALIHVVDAS 113 (396)
T ss_pred CcCCCcc---chhhHHHHHHHHHH--HCCEEEEEEeCC
Confidence 9975321 11222222222222 489999998875
No 261
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.15 E-value=2.8e-05 Score=83.25 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=66.7
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccce-eEEEEEEEEE-------CCEEEEEEeCCCCCCCccchhchHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGT-KKVQDVVGTV-------QGIKVRVIDTPGLLPSWSDQRQNEKIL 706 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstT-re~qei~geI-------~GipVtVIDTPGL~DS~gd~~~neeIl 706 (1266)
.+|+|+|..|||||||++.+++..... . +..+. .........+ ..+.+.|+||+|-..- ..+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~-~-~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~-------~~l- 70 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLG-R-PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV-------KST- 70 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC-C-CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH-------HHH-
Confidence 379999999999999999999864221 1 11111 1111111222 1357899999997321 111
Q ss_pred HHHHHhhhcCCCCEEEEEeecCCCCCCCCcH-HHHHHHHHHhC-----------------CCCCccEEEEEeccCCCC
Q 000824 707 HSVKRFIKKTPPDIVLYLDRLDMQNRDFSDM-PLLRTITDIFG-----------------PSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 707 keIKkfLk~~~pDVVLLVIrld~~r~d~eD~-elLK~I~eiFG-----------------~ei~k~tIVVLTKaDeL~ 766 (1266)
...+. ...|++|+|.+++.. .+.... ..+..+...-+ .....++|||-||.|...
T Consensus 71 --~~~~y--r~ad~iIlVyDvtn~-~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 71 --RAVFY--NQVNGIILVHDLTNR-KSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred --HHHHh--CcCCEEEEEEECcCh-HHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 11232 358999999888743 222221 22333332210 112468999999999753
No 262
>PRK00098 GTPase RsgA; Reviewed
Probab=98.14 E-value=5.8e-06 Score=93.03 Aligned_cols=58 Identities=28% Similarity=0.428 Sum_probs=40.6
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCccc-------ceeEEEEEEEEECCEEEEEEeCCCCCC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQM-------GTKKVQDVVGTVQGIKVRVIDTPGLLP 694 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rs-------tTre~qei~geI~GipVtVIDTPGL~D 694 (1266)
+..++|+|++|||||||||+|++.....++.... +|+....+. +.+ ...||||||+..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~--~~~-~~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYD--LPG-GGLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEE--cCC-CcEEEECCCcCc
Confidence 4589999999999999999999986655544332 454333322 221 247999999974
No 263
>PTZ00416 elongation factor 2; Provisional
Probab=98.14 E-value=1.4e-05 Score=101.21 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=73.8
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCc---------------ccceeEEEEEEEEEC----------CEEEEEEe
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAF---------------QMGTKKVQDVVGTVQ----------GIKVRVID 688 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~---------------rstTre~qei~geI~----------GipVtVID 688 (1266)
-.+|+|+|..++|||||+++|+.....+.... ++.|.........+. +..++|||
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD 98 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID 98 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence 35999999999999999999997533221111 122222111222332 67799999
Q ss_pred CCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 689 TPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 689 TPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
|||..+ ...++...+ ...|++++|+++.. .....+..+++.+.+. ..+.|+++||+|.+
T Consensus 99 tPG~~~----------f~~~~~~al--~~~D~ailVvda~~-g~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 99 SPGHVD----------FSSEVTAAL--RVTDGALVVVDCVE-GVCVQTETVLRQALQE-----RIRPVLFINKVDRA 157 (836)
T ss_pred CCCHHh----------HHHHHHHHH--hcCCeEEEEEECCC-CcCccHHHHHHHHHHc-----CCCEEEEEEChhhh
Confidence 999953 222333333 34899999988764 3554566666666543 46899999999986
No 264
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.13 E-value=1.9e-05 Score=95.49 Aligned_cols=114 Identities=11% Similarity=0.050 Sum_probs=70.2
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccc---------------c-ccC-----cccceeEEEEEEEEECCEEEEEEeCCCC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKF---------------G-TDA-----FQMGTKKVQDVVGTVQGIKVRVIDTPGL 692 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vf---------------t-vda-----~rstTre~qei~geI~GipVtVIDTPGL 692 (1266)
-.+|+|+|..|+|||||+++|+..... . .+. -++.+.........+.+..+.+|||||.
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 469999999999999999999732110 0 110 1122333334456678999999999998
Q ss_pred CCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 693 LPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 693 ~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
.+- ..... .++. .+|++++|++++.. .......+++... . ...++++++||+|..
T Consensus 90 ~df------~~~~~----~~l~--~aD~aIlVvDa~~g-v~~~t~~l~~~~~-~----~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 90 EDF------SEDTY----RTLT--AVDSALMVIDAAKG-VEPQTRKLMEVCR-L----RDTPIFTFINKLDRD 144 (526)
T ss_pred hhh------HHHHH----HHHH--HCCEEEEEEecCCC-CCHHHHHHHHHHH-h----cCCCEEEEEECCccc
Confidence 431 11222 2332 47999999887642 2222223333222 1 257899999999964
No 265
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.13 E-value=1.7e-05 Score=92.76 Aligned_cols=118 Identities=13% Similarity=0.066 Sum_probs=68.7
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccc--cCcccceeEEEE----------------EEEE----------ECCEEE
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGT--DAFQMGTKKVQD----------------VVGT----------VQGIKV 684 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftv--da~rstTre~qe----------------i~ge----------I~GipV 684 (1266)
..++|+++|..++|||||+++|.+...... ..-++.|...-. +... ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 357999999999999999999987421100 001111111100 0000 024689
Q ss_pred EEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCC
Q 000824 685 RVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAAS 764 (1266)
Q Consensus 685 tVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDe 764 (1266)
.||||||.. .....+...+ ..+|++++|++++.........+.+..+ ..++ .++++||+||+|.
T Consensus 83 ~liDtPGh~----------~f~~~~~~g~--~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g---i~~iIVvvNK~Dl 146 (406)
T TIGR03680 83 SFVDAPGHE----------TLMATMLSGA--ALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG---IKNIVIVQNKIDL 146 (406)
T ss_pred EEEECCCHH----------HHHHHHHHHH--HHCCEEEEEEECCCCccccchHHHHHHH-HHcC---CCeEEEEEEcccc
Confidence 999999962 2223333222 2479999998887432123334444433 3443 2578999999997
Q ss_pred CC
Q 000824 765 AP 766 (1266)
Q Consensus 765 L~ 766 (1266)
..
T Consensus 147 ~~ 148 (406)
T TIGR03680 147 VS 148 (406)
T ss_pred CC
Confidence 64
No 266
>PRK10867 signal recognition particle protein; Provisional
Probab=98.13 E-value=8.4e-06 Score=96.53 Aligned_cols=119 Identities=21% Similarity=0.292 Sum_probs=73.2
Q ss_pred ccEEEEEccCCCCHHHHHHHHhc-------Ccc--ccccCcccceeEEE---------EEEE------------------
Q 000824 634 SCTIMVLGKTGVGKSATINSIFD-------EVK--FGTDAFQMGTKKVQ---------DVVG------------------ 677 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLG-------r~v--ftvda~rstTre~q---------ei~g------------------ 677 (1266)
+..|+++|++|+|||||+.+|+. ..+ +..|.+++++.++. .++.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a 179 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEA 179 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHH
Confidence 57899999999999999988875 222 33466776542111 0110
Q ss_pred EECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEE
Q 000824 678 TVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIV 757 (1266)
Q Consensus 678 eI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIV 757 (1266)
...++.++||||||... .++..+.++..+.....|+.++||++... . ...++.. +.|... ....-+
T Consensus 180 ~~~~~DvVIIDTaGrl~------~d~~lm~eL~~i~~~v~p~evllVlda~~---g---q~av~~a-~~F~~~-~~i~gi 245 (433)
T PRK10867 180 KENGYDVVIVDTAGRLH------IDEELMDELKAIKAAVNPDEILLVVDAMT---G---QDAVNTA-KAFNEA-LGLTGV 245 (433)
T ss_pred HhcCCCEEEEeCCCCcc------cCHHHHHHHHHHHHhhCCCeEEEEEeccc---H---HHHHHHH-HHHHhh-CCCCEE
Confidence 01245689999999853 24556667666665567888899977542 1 1223322 223321 234668
Q ss_pred EEeccCCCC
Q 000824 758 VLTHAASAP 766 (1266)
Q Consensus 758 VLTKaDeL~ 766 (1266)
|+||.|...
T Consensus 246 IlTKlD~~~ 254 (433)
T PRK10867 246 ILTKLDGDA 254 (433)
T ss_pred EEeCccCcc
Confidence 889999643
No 267
>PRK13796 GTPase YqeH; Provisional
Probab=98.12 E-value=4.7e-06 Score=96.41 Aligned_cols=58 Identities=31% Similarity=0.388 Sum_probs=45.5
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC-----ccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE-----VKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLP 694 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr-----~vftvda~rstTre~qei~geI~GipVtVIDTPGL~D 694 (1266)
..+++|||.||||||||||+|++. ..++++..+++|+..+.+. +. ....++||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~--l~-~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIP--LD-DGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEE--cC-CCcEEEECCCccc
Confidence 458999999999999999999964 2456778899998876654 21 2357999999964
No 268
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.11 E-value=6.8e-06 Score=92.04 Aligned_cols=80 Identities=21% Similarity=0.279 Sum_probs=48.6
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCc-------ccceeEEEEEEEEECCEEEEEEeCCCCCCCc---cchhchHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAF-------QMGTKKVQDVVGTVQGIKVRVIDTPGLLPSW---SDQRQNEK 704 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~-------rstTre~qei~geI~GipVtVIDTPGL~DS~---gd~~~nee 704 (1266)
.+++|+|++|||||||||+|++.....++.. +.+|+....+..... ..++||||+.+-. ........
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~~~~~~~ 238 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFGLLHIDPEELAH 238 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccCCccCCHHHHHH
Confidence 5899999999999999999999765544322 224554433332112 3699999996421 11222333
Q ss_pred HHHHHHHhhhcCC
Q 000824 705 ILHSVKRFIKKTP 717 (1266)
Q Consensus 705 IlkeIKkfLk~~~ 717 (1266)
...++..+...|+
T Consensus 239 ~f~~~~~~~~~C~ 251 (287)
T cd01854 239 YFPEFRELAGQCK 251 (287)
T ss_pred HhHHHHHHhCCCC
Confidence 4444555554444
No 269
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.09 E-value=9.6e-07 Score=100.67 Aligned_cols=119 Identities=22% Similarity=0.378 Sum_probs=76.3
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcC------cc--ccccCcccceeEEEEEEEE--------------------------
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDE------VK--FGTDAFQMGTKKVQDVVGT-------------------------- 678 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr------~v--ftvda~rstTre~qei~ge-------------------------- 678 (1266)
.+..|++||-.|+||||||.+|+.. .+ +..|+||.++.+|+..+++
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 4789999999999999999999963 22 3457777765544322211
Q ss_pred -ECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcC------CCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCC
Q 000824 679 -VQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKT------PPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSI 751 (1266)
Q Consensus 679 -I~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~------~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei 751 (1266)
-.++.+.+|||+|-..+ ...+|.++++..+-. .||-+|++++++... .-..-.+.+.+..+
T Consensus 218 kar~~DvvliDTAGRLhn------k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq---nal~QAk~F~eav~--- 285 (340)
T COG0552 218 KARGIDVVLIDTAGRLHN------KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ---NALSQAKIFNEAVG--- 285 (340)
T ss_pred HHcCCCEEEEeCcccccC------chhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh---hHHHHHHHHHHhcC---
Confidence 12466899999998754 345666666554432 367788887766432 22222344444332
Q ss_pred CccEEEEEeccCCC
Q 000824 752 WFNAIVVLTHAASA 765 (1266)
Q Consensus 752 ~k~tIVVLTKaDeL 765 (1266)
-.-+|+||.|..
T Consensus 286 --l~GiIlTKlDgt 297 (340)
T COG0552 286 --LDGIILTKLDGT 297 (340)
T ss_pred --CceEEEEecccC
Confidence 366899999954
No 270
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.08 E-value=2.7e-05 Score=95.54 Aligned_cols=113 Identities=17% Similarity=0.090 Sum_probs=68.3
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCcccc---------ccC-----cccceeEEEEEEEEEC-----CEEEEEEeCCCCCCC
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFG---------TDA-----FQMGTKKVQDVVGTVQ-----GIKVRVIDTPGLLPS 695 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vft---------vda-----~rstTre~qei~geI~-----GipVtVIDTPGL~DS 695 (1266)
.+|+|+|..++|||||+..|+...... .+. .++.|.........+. ++.+.||||||..+.
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 589999999999999999998632111 111 1333433333333332 578999999999542
Q ss_pred ccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 696 WSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 696 ~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
...+..++. ..|++|+|++++.. ....+...+..+.. ...++|+|+||+|..
T Consensus 88 ----------~~~v~~sl~--~aD~aILVVDas~g-v~~qt~~~~~~~~~-----~~lpiIvViNKiDl~ 139 (600)
T PRK05433 88 ----------SYEVSRSLA--ACEGALLVVDASQG-VEAQTLANVYLALE-----NDLEIIPVLNKIDLP 139 (600)
T ss_pred ----------HHHHHHHHH--HCCEEEEEEECCCC-CCHHHHHHHHHHHH-----CCCCEEEEEECCCCC
Confidence 122333333 47889999887642 22222223332221 245799999999964
No 271
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.07 E-value=4e-05 Score=79.97 Aligned_cols=114 Identities=12% Similarity=0.167 Sum_probs=66.6
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
.++|+++|..|||||||++.++... |. ..+.++.-........+.+ +.+.|+||||-.. .+.+..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~-f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~-----------~~~l~~ 69 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNA-FP-KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE-----------YDRLRT 69 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCC-CC-cCCCCceEeeeEEEEEECCEEEEEEEEECCCchh-----------hhhhhh
Confidence 3689999999999999999998652 21 1222222121222223455 5688999999732 111221
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCcHH--HHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSDMP--LLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD~e--lLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
. -...+|++++|.+++... +..... .+..+.... ...+++||.||.|+.
T Consensus 70 ~-~~~~a~~~ilvydit~~~-Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~ 120 (191)
T cd01875 70 L-SYPQTNVFIICFSIASPS-SYENVRHKWHPEVCHHC---PNVPILLVGTKKDLR 120 (191)
T ss_pred h-hccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhh
Confidence 1 123689999998876432 212221 222233221 247899999999964
No 272
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.06 E-value=2.9e-05 Score=84.99 Aligned_cols=114 Identities=13% Similarity=0.193 Sum_probs=68.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
..++|+|+|..||||||+++.++... |.. .+.++.-........+.+ +.+.|+||+|-.. ...+.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~-F~~-~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~-----------~~~~~ 78 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDC-YPE-TYVPTVFENYTAGLETEEQRVELSLWDTSGSPY-----------YDNVR 78 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCC-CCC-CcCCceeeeeEEEEEECCEEEEEEEEeCCCchh-----------hHHHH
Confidence 45799999999999999999998753 322 232222222222233444 5688999999621 11111
Q ss_pred -HhhhcCCCCEEEEEeecCCCCCCCCc--HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 711 -RFIKKTPPDIVLYLDRLDMQNRDFSD--MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 711 -kfLk~~~pDVVLLVIrld~~r~d~eD--~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
.+ ....|+++||.+++.. .+... ...+..+.... + ..++|+|.||+|+.
T Consensus 79 ~~~--~~~ad~vIlVyDit~~-~Sf~~~~~~w~~~i~~~~-~--~~piilVgNK~DL~ 130 (232)
T cd04174 79 PLC--YSDSDAVLLCFDISRP-ETVDSALKKWKAEIMDYC-P--STRILLIGCKTDLR 130 (232)
T ss_pred HHH--cCCCcEEEEEEECCCh-HHHHHHHHHHHHHHHHhC-C--CCCEEEEEECcccc
Confidence 12 2468999999887643 22111 12233444332 2 35899999999963
No 273
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.06 E-value=2.7e-05 Score=84.53 Aligned_cols=113 Identities=15% Similarity=0.202 Sum_probs=65.3
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+|||..|||||||++.++... |.. .+.++..........+++ +.|.|+||+|-.. +..+..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~-f~~-~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~-----------~~~l~~- 67 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA-YPG-SYVPTVFENYTASFEIDKRRIELNMWDTSGSSY-----------YDNVRP- 67 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCC-ccCCccccceEEEEEECCEEEEEEEEeCCCcHH-----------HHHHhH-
Confidence 589999999999999999999753 221 222222221222233444 5678899999631 111111
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcH-H-HHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDM-P-LLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~-e-lLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+.....|++|+|.+++.. .+.... . ....+.. +. ...++|||.||+|+.
T Consensus 68 ~~~~~~d~illvfdis~~-~Sf~~i~~~w~~~~~~-~~--~~~piiLVgnK~DL~ 118 (222)
T cd04173 68 LAYPDSDAVLICFDISRP-ETLDSVLKKWQGETQE-FC--PNAKVVLVGCKLDMR 118 (222)
T ss_pred HhccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHh-hC--CCCCEEEEEECcccc
Confidence 113468999999887643 111111 1 1112222 11 246899999999974
No 274
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.06 E-value=3.2e-05 Score=98.15 Aligned_cols=114 Identities=14% Similarity=0.099 Sum_probs=71.9
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCc---------------ccceeEEEEEEEEE----------------CCEE
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAF---------------QMGTKKVQDVVGTV----------------QGIK 683 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~---------------rstTre~qei~geI----------------~Gip 683 (1266)
.+|+|+|..++|||||+++|+.....+.... ++.|-........+ .+..
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYL 99 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceE
Confidence 5999999999999999999986543211111 12222221122222 2678
Q ss_pred EEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccC
Q 000824 684 VRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAA 763 (1266)
Q Consensus 684 VtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaD 763 (1266)
+.||||||..+ ...++...+ ..+|.+++|+++.. ........+++.+... ..+.||++||+|
T Consensus 100 inliDtPGh~d----------F~~e~~~al--~~~D~ailVvda~~-Gv~~~t~~~~~~~~~~-----~~p~i~~iNK~D 161 (843)
T PLN00116 100 INLIDSPGHVD----------FSSEVTAAL--RITDGALVVVDCIE-GVCVQTETVLRQALGE-----RIRPVLTVNKMD 161 (843)
T ss_pred EEEECCCCHHH----------HHHHHHHHH--hhcCEEEEEEECCC-CCcccHHHHHHHHHHC-----CCCEEEEEECCc
Confidence 99999999843 222233333 34788888888763 3444455566655432 468899999999
Q ss_pred CCC
Q 000824 764 SAP 766 (1266)
Q Consensus 764 eL~ 766 (1266)
.+.
T Consensus 162 ~~~ 164 (843)
T PLN00116 162 RCF 164 (843)
T ss_pred ccc
Confidence 874
No 275
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.06 E-value=1.3e-05 Score=91.73 Aligned_cols=123 Identities=20% Similarity=0.224 Sum_probs=77.5
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEE-ECCEEEEEEeCCCCCCCccchh-chHHHHHHHHHhh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGT-VQGIKVRVIDTPGLLPSWSDQR-QNEKILHSVKRFI 713 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~ge-I~GipVtVIDTPGL~DS~gd~~-~neeIlkeIKkfL 713 (1266)
-|-|||-+++|||||||++.+.. -.+..|+.||....--... ..+..+++.|.||+++.+.... .-.+.++.|.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER-- 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIER-- 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHh--
Confidence 46799999999999999999753 3345677777644332222 3566799999999998653221 12445555544
Q ss_pred hcCCCCEEEEEeecCCCC-CCC-CcHH-HHHHHHHHhCC-CCCccEEEEEeccCCCC
Q 000824 714 KKTPPDIVLYLDRLDMQN-RDF-SDMP-LLRTITDIFGP-SIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r-~d~-eD~e-lLK~I~eiFG~-ei~k~tIVVLTKaDeL~ 766 (1266)
.-++++|++++... +++ ++.. +...|.. +.. -..++.+||+||+|...
T Consensus 238 ----t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~-Y~~~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 238 ----TRVLLHVIDLSPIDGRDPIEDYQTIRNELEK-YSPKLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred ----hheeEEEEecCcccCCCHHHHHHHHHHHHHH-hhHHhccCceEEEEeccCCCc
Confidence 34677887776433 222 2332 2333333 332 34689999999999654
No 276
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.05 E-value=1e-05 Score=92.11 Aligned_cols=88 Identities=18% Similarity=0.324 Sum_probs=67.0
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhc-hHHHHHHHHHh
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQ-NEKILHSVKRF 712 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~-neeIlkeIKkf 712 (1266)
..+++|||.+.||||||+|+|++.. ..+..|+.||.++.---..+.|..|.++|+||+...+..... ..+++..+
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~--- 138 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA--- 138 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee---
Confidence 3599999999999999999999963 345678888888777777789999999999999876533222 13333332
Q ss_pred hhcCCCCEEEEEeecC
Q 000824 713 IKKTPPDIVLYLDRLD 728 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld 728 (1266)
..+|+|++|+++.
T Consensus 139 ---R~ADlIiiVld~~ 151 (365)
T COG1163 139 ---RNADLIIIVLDVF 151 (365)
T ss_pred ---ccCCEEEEEEecC
Confidence 2489999997765
No 277
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.04 E-value=3.7e-05 Score=81.21 Aligned_cols=115 Identities=13% Similarity=0.143 Sum_probs=62.0
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccc-eeEEEEEEEEE--CCEEEEEEeCCCCCCCccchhchHHHHHHH
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMG-TKKVQDVVGTV--QGIKVRVIDTPGLLPSWSDQRQNEKILHSV 709 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rst-Tre~qei~geI--~GipVtVIDTPGL~DS~gd~~~neeIlkeI 709 (1266)
..++|+|+|+.|||||||++.++... +.. .+.++ ..+........ ..+.+.++||||-..- ..+.
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~-~~~-~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~-------~~~~--- 75 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGE-FEK-KYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF-------GGLR--- 75 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCC-CCC-CCCCccceEEEEEEEEECCeEEEEEEEECCCchhh-------hhhh---
Confidence 35799999999999999997654322 111 11111 11122222112 3467899999996321 1111
Q ss_pred HHhhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 710 KRFIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 710 KkfLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
..+. ...+++++|.+++.. .+... ...+..+..... ..++++|.||+|..
T Consensus 76 ~~~~--~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 76 DGYY--IKGQCAIIMFDVTSR-ITYKNVPNWHRDIVRVCE---NIPIVLVGNKVDVK 126 (215)
T ss_pred HHHh--ccCCEEEEEEECcCH-HHHHHHHHHHHHHHHhCC---CCCEEEEEECccCc
Confidence 1222 246888888776532 11111 122333333321 35788899999964
No 278
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.02 E-value=3.8e-05 Score=90.18 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=67.9
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCcccccc--CcccceeEEEE----------------EEEE--EC--------CEE
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFGTD--AFQMGTKKVQD----------------VVGT--VQ--------GIK 683 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~vftvd--a~rstTre~qe----------------i~ge--I~--------Gip 683 (1266)
+..++|+++|..++|||||+.+|.+....... ..++.|...-. +... .. ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 45689999999999999999999763110000 01222322110 0000 00 267
Q ss_pred EEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccC
Q 000824 684 VRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAA 763 (1266)
Q Consensus 684 VtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaD 763 (1266)
+.|+||||.. .+...+...+ ..+|++++|++++...........+..+. .++ .+++++|+||+|
T Consensus 87 i~liDtPG~~----------~f~~~~~~~~--~~~D~~llVVDa~~~~~~~~t~~~l~~l~-~~~---i~~iiVVlNK~D 150 (411)
T PRK04000 87 VSFVDAPGHE----------TLMATMLSGA--ALMDGAILVIAANEPCPQPQTKEHLMALD-IIG---IKNIVIVQNKID 150 (411)
T ss_pred EEEEECCCHH----------HHHHHHHHHH--hhCCEEEEEEECCCCCCChhHHHHHHHHH-HcC---CCcEEEEEEeec
Confidence 9999999952 2222222211 24799999988764211233344444442 233 246899999999
Q ss_pred CCC
Q 000824 764 SAP 766 (1266)
Q Consensus 764 eL~ 766 (1266)
...
T Consensus 151 l~~ 153 (411)
T PRK04000 151 LVS 153 (411)
T ss_pred ccc
Confidence 864
No 279
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.01 E-value=1.2e-05 Score=80.94 Aligned_cols=57 Identities=32% Similarity=0.289 Sum_probs=44.0
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGL 692 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL 692 (1266)
...+++++|.+|+||||++|.|++.....+....++|...+.+. .+..+.|+||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVK---ITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEE---cCCCEEEEECcCC
Confidence 35789999999999999999999877666666666665544222 2347899999996
No 280
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.01 E-value=3.5e-05 Score=80.34 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=68.2
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+++|..|||||||+..++... |.. .+.++..........+++ +++.++||+|-..- ..+. ..+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-f~~-~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~-------~~~~---~~~ 69 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FPT-DYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDY-------NRLR---PLS 69 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-CCC-CCCCcceeeeEEEEEECCEEEEEEEEECCCCccc-------cccc---hhh
Confidence 479999999999999999999753 322 222222222222234444 67899999997421 0111 112
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcH--HHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDM--PLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~--elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+ ...+++|+|.+++.. .+.... ..+..+.... . ..+++||-||+|+.
T Consensus 70 ~--~~a~~~ilvyd~~~~-~Sf~~~~~~w~~~i~~~~-~--~~piilvgnK~Dl~ 118 (176)
T cd04133 70 Y--RGADVFVLAFSLISR-ASYENVLKKWVPELRHYA-P--NVPIVLVGTKLDLR 118 (176)
T ss_pred c--CCCcEEEEEEEcCCH-HHHHHHHHHHHHHHHHhC-C--CCCEEEEEeChhhc
Confidence 2 358999999887743 222221 2334443322 2 47899999999974
No 281
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.97 E-value=1.2e-05 Score=91.01 Aligned_cols=59 Identities=32% Similarity=0.410 Sum_probs=39.4
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccC-------cccceeEEEEEEEEECCEEEEEEeCCCCCCC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDA-------FQMGTKKVQDVVGTVQGIKVRVIDTPGLLPS 695 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda-------~rstTre~qei~geI~GipVtVIDTPGL~DS 695 (1266)
+...+|+|++|||||||||+|++.....+.. -+-||+...-+...-.| .|||||||..-
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 3489999999999999999999864433322 23344443333322234 49999999753
No 282
>PLN00023 GTP-binding protein; Provisional
Probab=97.95 E-value=7.7e-05 Score=85.83 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=68.0
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE---------------CCEEEEEEeCCCCCCCcc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV---------------QGIKVRVIDTPGLLPSWS 697 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI---------------~GipVtVIDTPGL~DS~g 697 (1266)
..++|+|+|..||||||+++.+++... .....+............+ ..+.+.|+||+|-..-
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F-~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf-- 96 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSS-IARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY-- 96 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCc-ccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh--
Confidence 357999999999999999999997632 2111111111111111122 1356899999996311
Q ss_pred chhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCC----------CCCccEEEEEeccCCCC
Q 000824 698 DQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGP----------SIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 698 d~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~----------ei~k~tIVVLTKaDeL~ 766 (1266)
..+. ..|+ ...+++|+|.+++... .... ...++.|...... ....++|||-||+|+..
T Consensus 97 -----rsL~---~~yy--r~AdgiILVyDITdr~-SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 97 -----KDCR---SLFY--SQINGVIFVHDLSQRR-TKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred -----hhhh---HHhc--cCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 1111 1222 3589999998876532 2112 1234444443210 01357999999999753
No 283
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.95 E-value=3.8e-05 Score=96.02 Aligned_cols=115 Identities=12% Similarity=0.035 Sum_probs=70.4
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCcccc----------ccC-----cccceeEEE----EEEEEECCEEEEEEeCCCCCC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFG----------TDA-----FQMGTKKVQ----DVVGTVQGIKVRVIDTPGLLP 694 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vft----------vda-----~rstTre~q----ei~geI~GipVtVIDTPGL~D 694 (1266)
-.+|+++|..|+|||||++.|+.....+ .+. .++.|.... .....+.+..+.||||||..+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 4699999999999999999997431110 111 122232211 122345778999999999964
Q ss_pred CccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 695 SWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 695 S~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
- ...+ ...+ ...|++|+|+++.. .....+..+++.+.+. ..+.++++||+|...
T Consensus 99 f------~~~~----~~al--~~aD~~llVvda~~-g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 99 F------GGDV----TRAM--RAVDGAIVVVCAVE-GVMPQTETVLRQALKE-----NVKPVLFINKVDRLI 152 (720)
T ss_pred c------HHHH----HHHH--HhcCEEEEEEecCC-CCCccHHHHHHHHHHc-----CCCEEEEEEChhccc
Confidence 2 1122 2223 24799999987653 2333444455444322 356789999999764
No 284
>PRK12740 elongation factor G; Reviewed
Probab=97.94 E-value=5.5e-05 Score=93.46 Aligned_cols=108 Identities=18% Similarity=0.142 Sum_probs=68.9
Q ss_pred EccCCCCHHHHHHHHhcCcccc------------ccC-----cccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhch
Q 000824 640 LGKTGVGKSATINSIFDEVKFG------------TDA-----FQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQN 702 (1266)
Q Consensus 640 VGpTGVGKSTLINSLLGr~vft------------vda-----~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~n 702 (1266)
+|+.|+|||||+|.|+.....+ .+. .++.|.........+.++.+.+|||||..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence 6899999999999997543211 111 133455555566778899999999999842
Q ss_pred HHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 703 EKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 703 eeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
.......++. .+|++++|++++.. .......+++.+.. ...+.++|+||+|..
T Consensus 73 --~~~~~~~~l~--~aD~vllvvd~~~~-~~~~~~~~~~~~~~-----~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 73 --FTGEVERALR--VLDGAVVVVCAVGG-VEPQTETVWRQAEK-----YGVPRIIFVNKMDRA 125 (668)
T ss_pred --HHHHHHHHHH--HhCeEEEEEeCCCC-cCHHHHHHHHHHHH-----cCCCEEEEEECCCCC
Confidence 1112223332 48999999887642 22233334444332 246899999999965
No 285
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.93 E-value=5.5e-05 Score=76.93 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=65.8
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkf 712 (1266)
++|+|+|.+|||||||++.++... |... +.++... ......+.| +.+.+.||+|... . .+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~-f~~~-~~~~~~~-~~~~i~~~~~~~~l~i~D~~g~~~--------~-------~~ 62 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGS-YVQL-ESPEGGR-FKKEVLVDGQSHLLLIRDEGGAPD--------A-------QF 62 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCC-CCCC-CCCCccc-eEEEEEECCEEEEEEEEECCCCCc--------h-------hH
Confidence 379999999999999999887642 2111 1111111 122345566 5588999999842 0 11
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
. ...|++++|.+++... +... ...+..+...... ...++++|-||.|..
T Consensus 63 ~--~~~~~~ilv~d~~~~~-sf~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~ 112 (158)
T cd04103 63 A--SWVDAVIFVFSLENEA-SFQTVYNLYHQLSSYRNI-SEIPLILVGTQDAIS 112 (158)
T ss_pred H--hcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHHhh
Confidence 1 2478999998876532 2222 2344455443321 246899999998853
No 286
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.92 E-value=0.00022 Score=84.91 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=74.7
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCcc-------------------------ccccC-----cccceeEEEEEEEEECC
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVK-------------------------FGTDA-----FQMGTKKVQDVVGTVQG 681 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~v-------------------------ftvda-----~rstTre~qei~geI~G 681 (1266)
+..++|+++|..++|||||+-.|+-... +..|. -++.|.+....+....+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4568999999999999999988873210 01111 24456565556667788
Q ss_pred EEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCC------CCcHHHHHHHHHHhCCCCCccE
Q 000824 682 IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRD------FSDMPLLRTITDIFGPSIWFNA 755 (1266)
Q Consensus 682 ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d------~eD~elLK~I~eiFG~ei~k~t 755 (1266)
+.++||||||.. +....+...+ ..+|++++|++++...+. ....+.+. +...+| .+++
T Consensus 85 ~~i~liDtPGh~----------df~~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~-~~~~~g---i~~i 148 (447)
T PLN00043 85 YYCTVIDAPGHR----------DFIKNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHAL-LAFTLG---VKQM 148 (447)
T ss_pred EEEEEEECCCHH----------HHHHHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHH-HHHHcC---CCcE
Confidence 999999999972 3344443333 358999999887653221 11122222 222333 3578
Q ss_pred EEEEeccCCC
Q 000824 756 IVVLTHAASA 765 (1266)
Q Consensus 756 IVVLTKaDeL 765 (1266)
||++||+|..
T Consensus 149 IV~vNKmD~~ 158 (447)
T PLN00043 149 ICCCNKMDAT 158 (447)
T ss_pred EEEEEcccCC
Confidence 9999999965
No 287
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.91 E-value=6.8e-05 Score=93.92 Aligned_cols=115 Identities=15% Similarity=0.101 Sum_probs=70.6
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccc----------cC-----cccceeEEEEEEEEE----CCEEEEEEeCCCCCC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGT----------DA-----FQMGTKKVQDVVGTV----QGIKVRVIDTPGLLP 694 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftv----------da-----~rstTre~qei~geI----~GipVtVIDTPGL~D 694 (1266)
-.+|+++|..++|||||+.+|+.....+. |. .++.|.........+ .+..++||||||..+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 35899999999999999999986432211 11 112222222111222 467899999999964
Q ss_pred CccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 695 SWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 695 S~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
- ..++...+. ..|++++|+++.. ........+++.+.+. ..+.|+++||+|...
T Consensus 100 f----------~~~~~~~l~--~~D~avlVvda~~-g~~~~t~~~~~~~~~~-----~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 100 F----------GGDVTRAMR--AVDGAIVVVDAVE-GVMPQTETVLRQALRE-----RVKPVLFINKVDRLI 153 (731)
T ss_pred h----------HHHHHHHHH--hcCEEEEEEECCC-CCCccHHHHHHHHHHc-----CCCeEEEEECchhhc
Confidence 1 123333332 3798899987654 3444455556554332 245799999999763
No 288
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.90 E-value=9.3e-06 Score=96.46 Aligned_cols=59 Identities=31% Similarity=0.381 Sum_probs=51.4
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPS 695 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS 695 (1266)
.++|-+||-+|||||||||+|.|+++..++..++-|+..+.+. ..-.+.++|+|||.-+
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~---ls~~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIF---LSPSVCLCDCPGLVFP 372 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEE---cCCCceecCCCCcccc
Confidence 3799999999999999999999999999999999998877765 3446899999999643
No 289
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=1.9e-05 Score=93.19 Aligned_cols=124 Identities=23% Similarity=0.312 Sum_probs=85.9
Q ss_pred CccEEEEEccCCCCHHHHHHHHhc-----C-cc--ccccCcccceeEEEEEEE---------------------------
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFD-----E-VK--FGTDAFQMGTKKVQDVVG--------------------------- 677 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLG-----r-~v--ftvda~rstTre~qei~g--------------------------- 677 (1266)
.+..|.++|-.||||||.+.+|+= . .+ +..++||+++.++++++.
T Consensus 377 rPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak 456 (587)
T KOG0781|consen 377 RPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAK 456 (587)
T ss_pred CCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHH
Confidence 578999999999999999999873 1 11 234667776554433221
Q ss_pred ------EECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCC
Q 000824 678 ------TVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSI 751 (1266)
Q Consensus 678 ------eI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei 751 (1266)
.-.|..|++|||+|-. ..+..+|..+.++++..+||.||||-.+- .......-++.+.+.++...
T Consensus 457 ~AI~~a~~~gfDVvLiDTAGR~------~~~~~lm~~l~k~~~~~~pd~i~~vgeal---vg~dsv~q~~~fn~al~~~~ 527 (587)
T KOG0781|consen 457 EAIQEARNQGFDVVLIDTAGRM------HNNAPLMTSLAKLIKVNKPDLILFVGEAL---VGNDSVDQLKKFNRALADHS 527 (587)
T ss_pred HHHHHHHhcCCCEEEEeccccc------cCChhHHHHHHHHHhcCCCceEEEehhhh---hCcHHHHHHHHHHHHHhcCC
Confidence 1246779999999985 34678899999999999999999995432 11223344666666666533
Q ss_pred CccE--EEEEeccCCC
Q 000824 752 WFNA--IVVLTHAASA 765 (1266)
Q Consensus 752 ~k~t--IVVLTKaDeL 765 (1266)
..+. -|++||+|-+
T Consensus 528 ~~r~id~~~ltk~dtv 543 (587)
T KOG0781|consen 528 TPRLIDGILLTKFDTV 543 (587)
T ss_pred CccccceEEEEeccch
Confidence 2333 3889999954
No 290
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.85 E-value=5.8e-05 Score=83.00 Aligned_cols=122 Identities=17% Similarity=0.189 Sum_probs=65.3
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEE-ECCEEEEEEeCCCCCCCccch--hchHHHHHHHHHh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGT-VQGIKVRVIDTPGLLPSWSDQ--RQNEKILHSVKRF 712 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~ge-I~GipVtVIDTPGL~DS~gd~--~~neeIlkeIKkf 712 (1266)
+|+|+|+.|+||||..+.|++.....-..+-..|.++...... ....++.++|.||-..-.... ...+.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~i------- 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEI------- 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHH-------
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHH-------
Confidence 6899999999999999999987433211222344444444433 345799999999986431100 111112
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHH-HHHHHHhCCCCCccEEEEEeccCCCCC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLL-RTITDIFGPSIWFNAIVVLTHAASAPP 767 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elL-K~I~eiFG~ei~k~tIVVLTKaDeL~P 767 (1266)
...+++++||+++....+. .+..-+ ..+.......-..++-|.+.|+|.+.+
T Consensus 74 --f~~v~~LIyV~D~qs~~~~-~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 74 --FSNVGVLIYVFDAQSDDYD-EDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp --HCTESEEEEEEETT-STCH-HHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred --HhccCEEEEEEEcccccHH-HHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 2357899999877533222 232222 222222222335678889999998764
No 291
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.84 E-value=0.00014 Score=77.60 Aligned_cols=108 Identities=12% Similarity=0.166 Sum_probs=62.5
Q ss_pred EccCCCCHHHHHHHHhcCccccccCcccce-eEEEEEEEEEC--CEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcC
Q 000824 640 LGKTGVGKSATINSIFDEVKFGTDAFQMGT-KKVQDVVGTVQ--GIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKT 716 (1266)
Q Consensus 640 VGpTGVGKSTLINSLLGr~vftvda~rstT-re~qei~geI~--GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~ 716 (1266)
+|..||||||+++.++... +.. .+.++. .+.......+. .+.+.|+||||-..- ..+. ..++ .
T Consensus 1 vG~~~vGKTsLi~r~~~~~-f~~-~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~-------~~l~---~~~~--~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE-FEK-KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF-------GGLR---DGYY--I 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC-CCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCchhh-------hhhh---HHHh--c
Confidence 6999999999999998642 221 222221 22222223333 468899999997321 1111 1232 3
Q ss_pred CCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 717 PPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 717 ~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
..+++++|.+++.. .+... ...+..|.+.. ...++++|.||+|+.
T Consensus 67 ~ad~~ilV~D~t~~-~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~ 112 (200)
T smart00176 67 QGQCAIIMFDVTAR-VTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVK 112 (200)
T ss_pred CCCEEEEEEECCCh-HHHHHHHHHHHHHHHhC---CCCCEEEEEECcccc
Confidence 57899999877643 12111 12333344432 246899999999964
No 292
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.83 E-value=9.6e-05 Score=83.06 Aligned_cols=125 Identities=16% Similarity=0.113 Sum_probs=74.9
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCcccc-ccC-cccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHH
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFG-TDA-FQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSV 709 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~vft-vda-~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeI 709 (1266)
+...+++++|.+|||||++||.++...... +.. -.+-|+.+..+ .-|..+++||.||+....-.....+++-+-.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f---~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF---HVGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee---eccceEEEEecCCcccccCCccCcchHhHhH
Confidence 445799999999999999999999865432 222 23334333322 3467899999999643211111223333333
Q ss_pred HHhhhcC-CCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 710 KRFIKKT-PPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 710 KkfLk~~-~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+.|+... ..-.++++++++ ..+...|...+.++-+. ..+..+||||+|..
T Consensus 211 ~~Y~leR~nLv~~FLLvd~s-v~i~~~D~~~i~~~ge~-----~VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDAS-VPIQPTDNPEIAWLGEN-----NVPMTSVFTKCDKQ 261 (320)
T ss_pred HHHHHhhhhhheeeeeeecc-CCCCCCChHHHHHHhhc-----CCCeEEeeehhhhh
Confidence 4443322 222233343343 34556677667776543 57899999999975
No 293
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.81 E-value=1.6e-05 Score=94.09 Aligned_cols=119 Identities=19% Similarity=0.241 Sum_probs=71.8
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC-------cc--ccccCcccceeEE------------EEEEE---------------
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE-------VK--FGTDAFQMGTKKV------------QDVVG--------------- 677 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr-------~v--ftvda~rstTre~------------qei~g--------------- 677 (1266)
+..|+++|++|+|||||+.+|+.. .+ +..|.+++.+.++ .....
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~ 178 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYA 178 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHH
Confidence 568999999999999998877643 11 2345566542211 11000
Q ss_pred EECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEE
Q 000824 678 TVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIV 757 (1266)
Q Consensus 678 eI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIV 757 (1266)
...++.++||||||... .+...+.++..+.....|+.++||+++... ...+... ..|...+ .-.-+
T Consensus 179 ~~~~~DvVIIDTaGr~~------~d~~l~~eL~~i~~~~~p~e~lLVvda~tg------q~~~~~a-~~f~~~v-~i~gi 244 (428)
T TIGR00959 179 KENGFDVVIVDTAGRLQ------IDEELMEELAAIKEILNPDEILLVVDAMTG------QDAVNTA-KTFNERL-GLTGV 244 (428)
T ss_pred HhcCCCEEEEeCCCccc------cCHHHHHHHHHHHHhhCCceEEEEEeccch------HHHHHHH-HHHHhhC-CCCEE
Confidence 01245689999999853 235566777766666678888999776421 1222222 2233222 34568
Q ss_pred EEeccCCCC
Q 000824 758 VLTHAASAP 766 (1266)
Q Consensus 758 VLTKaDeL~ 766 (1266)
|+||.|...
T Consensus 245 IlTKlD~~~ 253 (428)
T TIGR00959 245 VLTKLDGDA 253 (428)
T ss_pred EEeCccCcc
Confidence 899999643
No 294
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.81 E-value=0.00017 Score=76.38 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=64.5
Q ss_pred ccEEEEEccCCCCHHHHHHH-HhcCc----cccccCccccee--EEEEEE--------EEECC--EEEEEEeCCCCCCCc
Q 000824 634 SCTIMVLGKTGVGKSATINS-IFDEV----KFGTDAFQMGTK--KVQDVV--------GTVQG--IKVRVIDTPGLLPSW 696 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINS-LLGr~----vftvda~rstTr--e~qei~--------geI~G--ipVtVIDTPGL~DS~ 696 (1266)
.++|+++|..||||||+++. +.+.. .+.. .+.++.- +....+ ..++| +.+.|+||+|....
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~-~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLA-THVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCcc-ccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh-
Confidence 36899999999999999974 43321 1211 2222221 111111 12344 67899999998421
Q ss_pred cchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcH--HHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 697 SDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDM--PLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 697 gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~--elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+ +. +.....|++++|.+++.. .+.... ..+..+.... . ..++++|.||+|+.
T Consensus 80 ---------~---~~-~~~~~ad~iilv~d~t~~-~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~ 133 (195)
T cd01873 80 ---------D---RR-FAYGRSDVVLLCFSIASP-NSLRNVKTMWYPEIRHFC-P--RVPVILVGCKLDLR 133 (195)
T ss_pred ---------h---hc-ccCCCCCEEEEEEECCCh-hHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhcc
Confidence 0 11 113468999999887643 222222 1334444332 2 46899999999964
No 295
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.81 E-value=9.7e-05 Score=87.03 Aligned_cols=120 Identities=18% Similarity=0.272 Sum_probs=81.0
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcC------cc--ccccCcccceeEEEEE---------EEEE----------------
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDE------VK--FGTDAFQMGTKKVQDV---------VGTV---------------- 679 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr------~v--ftvda~rstTre~qei---------~geI---------------- 679 (1266)
.+-+|+++|--|+|||||+.+|+.. .+ +..|.||+++.++++. +...
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999863 22 3457788776544321 2211
Q ss_pred --CCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEE
Q 000824 680 --QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIV 757 (1266)
Q Consensus 680 --~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIV 757 (1266)
.++.++||||+|-. ..++.++.+++..-....||-+|||+++... +.-....+.+.+.+ .-+=|
T Consensus 179 k~~~~DvvIvDTAGRl------~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l-----~itGv 244 (451)
T COG0541 179 KEEGYDVVIVDTAGRL------HIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEAL-----GITGV 244 (451)
T ss_pred HHcCCCEEEEeCCCcc------cccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHHHHHHHHHhhhc-----CCceE
Confidence 23468999999975 3467888888877666789999999776532 12223333333332 34668
Q ss_pred EEeccCCCC
Q 000824 758 VLTHAASAP 766 (1266)
Q Consensus 758 VLTKaDeL~ 766 (1266)
|+||.|.-.
T Consensus 245 IlTKlDGda 253 (451)
T COG0541 245 ILTKLDGDA 253 (451)
T ss_pred EEEcccCCC
Confidence 999999653
No 296
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.77 E-value=4.7e-05 Score=77.18 Aligned_cols=103 Identities=21% Similarity=0.271 Sum_probs=66.0
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIK 714 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk 714 (1266)
.+|++||++|+||+|+.|+|-|....-- -|+ -+. +.. =-.|||||.. ..+..+++.|....
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk-----KTQ---Ave--~~d--~~~IDTPGEy------~~~~~~Y~aL~tt~- 62 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK-----KTQ---AVE--FND--KGDIDTPGEY------FEHPRWYHALITTL- 62 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc-----ccc---eee--ccC--ccccCCchhh------hhhhHHHHHHHHHh-
Confidence 4899999999999999999999743211 111 111 111 1269999985 34566666665433
Q ss_pred cCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 715 KTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 715 ~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
...++++||..++..... +--.|-.-+.+++|-|+||+|...
T Consensus 63 -~dadvi~~v~~and~~s~---------f~p~f~~~~~k~vIgvVTK~DLae 104 (148)
T COG4917 63 -QDADVIIYVHAANDPESR---------FPPGFLDIGVKKVIGVVTKADLAE 104 (148)
T ss_pred -hccceeeeeecccCcccc---------CCcccccccccceEEEEecccccc
Confidence 458999999877654211 111122223466999999999875
No 297
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.73 E-value=2.6e-05 Score=82.95 Aligned_cols=119 Identities=16% Similarity=0.238 Sum_probs=60.6
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIK 714 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk 714 (1266)
..|+|+||.|+|||+|...|.......+-+.. .. ..........+.++.|||+||-..- ...++..+. ++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~-n~~~~~~~~~~~~~~lvD~PGH~rl------r~~~~~~~~-~~- 73 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-EN-NIAYNVNNSKGKKLRLVDIPGHPRL------RSKLLDELK-YL- 73 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-SE-EEECCGSSTCGTCECEEEETT-HCC------CHHHHHHHH-HH-
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cC-CceEEeecCCCCEEEEEECCCcHHH------HHHHHHhhh-ch-
Confidence 48999999999999999999987433221111 00 0000000114568999999998431 223333322 22
Q ss_pred cCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHh----CCCCCccEEEEEeccCCCC
Q 000824 715 KTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIF----GPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 715 ~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiF----G~ei~k~tIVVLTKaDeL~ 766 (1266)
..+-+|+||++.... ...-..+.+.|..++ -.....+++|+.||.|...
T Consensus 74 -~~~k~IIfvvDSs~~--~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 74 -SNAKGIIFVVDSSTD--QKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp -GGEEEEEEEEETTTH--HHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred -hhCCEEEEEEeCccc--hhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 236678899776421 111112222222222 1234678999999999764
No 298
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.69 E-value=0.00011 Score=75.17 Aligned_cols=117 Identities=21% Similarity=0.302 Sum_probs=67.9
Q ss_pred EEEEEccCCCCHHHHHHHHhcC------ccc--cccCccccee----------EEEEEEE-----------------EEC
Q 000824 636 TIMVLGKTGVGKSATINSIFDE------VKF--GTDAFQMGTK----------KVQDVVG-----------------TVQ 680 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr------~vf--tvda~rstTr----------e~qei~g-----------------eI~ 680 (1266)
.++++|++|+||||++-.++.. .+. ..+.+++... ....... ...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 5889999999999998777642 222 2233433210 0000000 012
Q ss_pred CEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEe
Q 000824 681 GIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLT 760 (1266)
Q Consensus 681 GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLT 760 (1266)
+..++||||||... . ....+..+..+.....++.++||++.... ......+..+.+.++ ...+|+|
T Consensus 82 ~~d~viiDt~g~~~-----~-~~~~l~~l~~l~~~~~~~~~~lVv~~~~~---~~~~~~~~~~~~~~~-----~~~vilt 147 (173)
T cd03115 82 NFDVVIVDTAGRLQ-----I-DENLMEELKKIKRVVKPDEVLLVVDAMTG---QDAVNQAKAFNEALG-----ITGVILT 147 (173)
T ss_pred CCCEEEEECcccch-----h-hHHHHHHHHHHHhhcCCCeEEEEEECCCC---hHHHHHHHHHHhhCC-----CCEEEEE
Confidence 56689999999842 1 34556666665554568889999876421 122233333333332 3678889
Q ss_pred ccCCCC
Q 000824 761 HAASAP 766 (1266)
Q Consensus 761 KaDeL~ 766 (1266)
|.|...
T Consensus 148 k~D~~~ 153 (173)
T cd03115 148 KLDGDA 153 (173)
T ss_pred CCcCCC
Confidence 999764
No 299
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.66 E-value=0.00025 Score=81.81 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.8
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhc
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFD 656 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLG 656 (1266)
....+|.|.|++|+|||||++.|..
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999998764
No 300
>PRK13768 GTPase; Provisional
Probab=97.63 E-value=7.9e-05 Score=82.24 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=45.8
Q ss_pred EEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEec
Q 000824 682 IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTH 761 (1266)
Q Consensus 682 ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTK 761 (1266)
..+.||||||..+.. ......+.+.+++.....+++++|+++... .+..+......+....-.....+.++|+||
T Consensus 97 ~~~~~~d~~g~~~~~----~~~~~~~~~~~~l~~~~~~~ii~liD~~~~-~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK 171 (253)
T PRK13768 97 ADYVLVDTPGQMELF----AFRESGRKLVERLSGSSKSVVVFLIDAVLA-KTPSDFVSLLLLALSVQLRLGLPQIPVLNK 171 (253)
T ss_pred CCEEEEeCCcHHHHH----hhhHHHHHHHHHHHhcCCeEEEEEechHHh-CCHHHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence 368999999975431 112233333344433337889999776432 233343333333211111236899999999
Q ss_pred cCCCCC
Q 000824 762 AASAPP 767 (1266)
Q Consensus 762 aDeL~P 767 (1266)
+|.+..
T Consensus 172 ~D~~~~ 177 (253)
T PRK13768 172 ADLLSE 177 (253)
T ss_pred HhhcCc
Confidence 998864
No 301
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.62 E-value=0.0021 Score=77.16 Aligned_cols=126 Identities=18% Similarity=0.305 Sum_probs=80.6
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccC--------------------------------------------------
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDA-------------------------------------------------- 664 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda-------------------------------------------------- 664 (1266)
.+|++||--.+||||.+-.|+...+|.-+.
T Consensus 309 PRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RMr 388 (980)
T KOG0447|consen 309 PRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMR 388 (980)
T ss_pred ceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHHH
Confidence 599999999999999999988543221110
Q ss_pred ---cccceeEEEEEEEEECC---EEEEEEeCCCCCCCcc---chhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCC
Q 000824 665 ---FQMGTKKVQDVVGTVQG---IKVRVIDTPGLLPSWS---DQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFS 735 (1266)
Q Consensus 665 ---~rstTre~qei~geI~G---ipVtVIDTPGL~DS~g---d~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~e 735 (1266)
-.++|.....+..++.| .++++||.||++.+.. .....+.|.+.-+.|+. .|.+|++|+.- ...+ .
T Consensus 389 ~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~--NPNAIILCIQD--GSVD-A 463 (980)
T KOG0447|consen 389 KNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQ--NPNAIILCIQD--GSVD-A 463 (980)
T ss_pred hcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhc--CCCeEEEEecc--CCcc-h
Confidence 01234444444445544 4579999999986532 22334556665566665 59999999642 2344 3
Q ss_pred cHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 736 DMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 736 D~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
++..+-.|...+.+ ..+++|+|+||+|.+.
T Consensus 464 ERSnVTDLVsq~DP-~GrRTIfVLTKVDlAE 493 (980)
T KOG0447|consen 464 ERSIVTDLVSQMDP-HGRRTIFVLTKVDLAE 493 (980)
T ss_pred hhhhHHHHHHhcCC-CCCeeEEEEeecchhh
Confidence 44444444444443 4789999999999775
No 302
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00023 Score=87.20 Aligned_cols=118 Identities=14% Similarity=0.202 Sum_probs=70.6
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEE-----------------------------------------
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKV----------------------------------------- 672 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~----------------------------------------- 672 (1266)
...|++.|.|.+||||+||+++-+.+...+..+.+..-+
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~ 188 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGA 188 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCc
Confidence 579999999999999999999976554433222111000
Q ss_pred ---EEEEEEE-----CCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHH
Q 000824 673 ---QDVVGTV-----QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTIT 744 (1266)
Q Consensus 673 ---qei~geI-----~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~ 744 (1266)
.+++... ..-.+.+||.||+.-+. . ... .|-.+. ..+|+++||..+. +.++..+.+++....
T Consensus 189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~s---e-~ts---wid~~c--ldaDVfVlV~NaE-ntlt~sek~Ff~~vs 258 (749)
T KOG0448|consen 189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS---E-LTS---WIDSFC--LDADVFVLVVNAE-NTLTLSEKQFFHKVS 258 (749)
T ss_pred ceEEEEEecCccchhhhccceeccCCCCCCch---h-hhH---HHHHHh--hcCCeEEEEecCc-cHhHHHHHHHHHHhh
Confidence 1111000 01137899999995321 1 112 222222 2489999997765 335555666665554
Q ss_pred HHhCCCCCccEEEEEeccCCCC
Q 000824 745 DIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 745 eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+- ..++.|+-+|||...
T Consensus 259 ~~-----KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 259 EE-----KPNIFILNNKWDASA 275 (749)
T ss_pred cc-----CCcEEEEechhhhhc
Confidence 32 567788888999764
No 303
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.53 E-value=0.00061 Score=71.86 Aligned_cols=113 Identities=14% Similarity=0.146 Sum_probs=74.8
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
.++|+++|..|+||||+++++++...-.++ .|...+.....+.+..+.+.|--|-. .-..++ +.|.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~----pt~gf~Iktl~~~~~~L~iwDvGGq~-------~lr~~W---~nYf 81 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTIS----PTLGFQIKTLEYKGYTLNIWDVGGQK-------TLRSYW---KNYF 81 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccC----CccceeeEEEEecceEEEEEEcCCcc-------hhHHHH---HHhh
Confidence 689999999999999999999998632222 23344455567789999999988852 112222 3333
Q ss_pred hcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCC--CCCccEEEEEeccCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGP--SIWFNAIVVLTHAASA 765 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~--ei~k~tIVVLTKaDeL 765 (1266)
. ..|.++||++.....+-+ +....|++.+.. -+..+++|+.||.|.-
T Consensus 82 e--stdglIwvvDssD~~r~~---e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 82 E--STDGLIWVVDSSDRMRMQ---ECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred h--ccCeEEEEEECchHHHHH---HHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 2 478899997764433222 233444444432 3457899999999964
No 304
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.0014 Score=77.12 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=80.4
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcC---------------------cc----cccc-----CcccceeEEEEEEEEECC
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDE---------------------VK----FGTD-----AFQMGTKKVQDVVGTVQG 681 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr---------------------~v----ftvd-----a~rstTre~qei~geI~G 681 (1266)
+..++++++|.+.+|||||+-.|+=+ .- +..| ..++.|.+....+.+.+-
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 34689999999999999999887621 10 1112 256778777777777788
Q ss_pred EEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCC-----CCcHHHHHHHHHHhCCCCCccEE
Q 000824 682 IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRD-----FSDMPLLRTITDIFGPSIWFNAI 756 (1266)
Q Consensus 682 ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d-----~eD~elLK~I~eiFG~ei~k~tI 756 (1266)
+.++|+|+||..| .+.+.|.. ..++|+.+||+++....+. ..+.+.--.|...+| .+++|
T Consensus 85 ~~~tIiDaPGHrd---------FvknmItG---asqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG---i~~lI 149 (428)
T COG5256 85 YNFTIIDAPGHRD---------FVKNMITG---ASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG---IKQLI 149 (428)
T ss_pred ceEEEeeCCchHH---------HHHHhhcc---hhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC---CceEE
Confidence 8999999999632 22222222 2358988899877654211 112223334556666 58999
Q ss_pred EEEeccCCCC
Q 000824 757 VVLTHAASAP 766 (1266)
Q Consensus 757 VVLTKaDeL~ 766 (1266)
|++||.|...
T Consensus 150 VavNKMD~v~ 159 (428)
T COG5256 150 VAVNKMDLVS 159 (428)
T ss_pred EEEEcccccc
Confidence 9999999875
No 305
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.49 E-value=0.00089 Score=80.28 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=68.7
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCcccccc--CcccceeE----------EE------E---E--------E------E
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTD--AFQMGTKK----------VQ------D---V--------V------G 677 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvd--a~rstTre----------~q------e---i--------~------g 677 (1266)
..++|.++|..-.|||||+.+|.+....... .-++-|.+ |. . . . .
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 3579999999999999999999984221100 00111100 00 0 0 0 0
Q ss_pred EECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEE
Q 000824 678 TVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIV 757 (1266)
Q Consensus 678 eI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIV 757 (1266)
......+.||||||. +.+++.+...+ ..+|++++|++++.........+.+. +...+| .+++||
T Consensus 113 ~~~~~~i~~IDtPGH----------~~fi~~m~~g~--~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg---i~~iIV 176 (460)
T PTZ00327 113 MTLKRHVSFVDCPGH----------DILMATMLNGA--AVMDAALLLIAANESCPQPQTSEHLA-AVEIMK---LKHIII 176 (460)
T ss_pred ccccceEeeeeCCCH----------HHHHHHHHHHH--hhCCEEEEEEECCCCccchhhHHHHH-HHHHcC---CCcEEE
Confidence 011357899999996 23444433333 35899999988874212222233333 334455 368999
Q ss_pred EEeccCCCC
Q 000824 758 VLTHAASAP 766 (1266)
Q Consensus 758 VLTKaDeL~ 766 (1266)
|+||+|...
T Consensus 177 vlNKiDlv~ 185 (460)
T PTZ00327 177 LQNKIDLVK 185 (460)
T ss_pred EEecccccC
Confidence 999999764
No 306
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.47 E-value=0.00032 Score=79.89 Aligned_cols=65 Identities=31% Similarity=0.389 Sum_probs=53.2
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcC-----ccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCC
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDE-----VKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPS 695 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr-----~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS 695 (1266)
.....+++|+|-+||||||+||++... .++.++..++.|+.+..........++.+|||||+..+
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P 209 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVP 209 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCC
Confidence 335689999999999999999998753 45778889999998877555556678999999999864
No 307
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=97.46 E-value=0.0005 Score=73.70 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=73.0
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
..+|+++|.+|||||++.-..+...-. +.|.++.-+.......+++ ..+.|+||+|..+. .. ++. .
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~--~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~-------~~-~~~--~ 70 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFV--EDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEF-------SA-MRD--L 70 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccc--cccCCCccccceEEEEECCEEEEEEEEcCCCcccC-------hH-HHH--H
Confidence 468999999999999999887765322 1244444444444455555 45789999994321 11 111 1
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
++ ...|.+++|.+++.+.-...-..+++.|.+.-+. -+.++++|-||+|...
T Consensus 71 ~~--~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 71 YI--RNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLER 122 (196)
T ss_pred hh--ccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchh
Confidence 22 2468889998887543222233455555444343 3479999999999754
No 308
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00015 Score=84.26 Aligned_cols=120 Identities=20% Similarity=0.292 Sum_probs=77.4
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcC------c--cccccCcccceeEE---------EEEEEEE----------------
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDE------V--KFGTDAFQMGTKKV---------QDVVGTV---------------- 679 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr------~--vftvda~rstTre~---------qei~geI---------------- 679 (1266)
.+-.|++||--|+||||++.+++-+ . .+..|+|+.++-++ .-+|+.+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 3568999999999999999999963 1 23346666543222 2334332
Q ss_pred --CCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEE
Q 000824 680 --QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIV 757 (1266)
Q Consensus 680 --~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIV 757 (1266)
.++.++|+||.|-. .....++.+++...+...||.||||.++... +.-....+.+.+. ..-.-+
T Consensus 180 Kke~fdvIIvDTSGRh------~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---Qaae~Qa~aFk~~-----vdvg~v 245 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRH------KQEASLFEEMKQVSKAIKPDEIIFVMDASIG---QAAEAQARAFKET-----VDVGAV 245 (483)
T ss_pred HhcCCcEEEEeCCCch------hhhHHHHHHHHHHHhhcCCCeEEEEEecccc---HhHHHHHHHHHHh-----hccceE
Confidence 34668999999975 3456777777776666779999999776532 2222223333332 223568
Q ss_pred EEeccCCCC
Q 000824 758 VLTHAASAP 766 (1266)
Q Consensus 758 VLTKaDeL~ 766 (1266)
++||.|.-.
T Consensus 246 IlTKlDGha 254 (483)
T KOG0780|consen 246 ILTKLDGHA 254 (483)
T ss_pred EEEecccCC
Confidence 899999643
No 309
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00029 Score=81.90 Aligned_cols=87 Identities=22% Similarity=0.250 Sum_probs=60.6
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEE------------------ECCEEEEEEeCCCCCCC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGT------------------VQGIKVRVIDTPGLLPS 695 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~ge------------------I~GipVtVIDTPGL~DS 695 (1266)
.+++.|||.+|||||||.|+|+... +....|+.||-+...-... +.-.++.|||.+||...
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4689999999999999999999876 5556677777544322211 22357899999999764
Q ss_pred c--cchhchHHHHHHHHHhhhcCCCCEEEEEeecC
Q 000824 696 W--SDQRQNEKILHSVKRFIKKTPPDIVLYLDRLD 728 (1266)
Q Consensus 696 ~--gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld 728 (1266)
+ |...-| +.+..|+ ..|+++.|+++.
T Consensus 81 As~GeGLGN-kFL~~IR------evdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGN-KFLDNIR------EVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcch-HHHHhhh------hcCeEEEEEEec
Confidence 3 333434 3344443 488999998764
No 310
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.00051 Score=79.55 Aligned_cols=128 Identities=22% Similarity=0.306 Sum_probs=69.4
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcCcccc--ccCcccceeE-EEEEEE----EECC----------------------
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDEVKFG--TDAFQMGTKK-VQDVVG----TVQG---------------------- 681 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr~vft--vda~rstTre-~qei~g----eI~G---------------------- 681 (1266)
.+...-|+|+|+-..||||+||-|+....-. ++.- ++|.. +...++ .+.|
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpE-PTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl 133 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPE-PTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL 133 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCC-CCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence 4445689999999999999999999864211 1111 11111 100010 1111
Q ss_pred -------------EEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCc--HHHHHHHHHH
Q 000824 682 -------------IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSD--MPLLRTITDI 746 (1266)
Q Consensus 682 -------------ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD--~elLK~I~ei 746 (1266)
-.|+||||||+........+.---...+-.+. ..++|.|+++. +.+.++-.+ .+++..+
T Consensus 134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WF-aeR~D~IiLlf--D~hKLDIsdEf~~vi~aL--- 207 (532)
T KOG1954|consen 134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWF-AERVDRIILLF--DAHKLDISDEFKRVIDAL--- 207 (532)
T ss_pred HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHH-HHhccEEEEEe--chhhccccHHHHHHHHHh---
Confidence 23799999999764211011000011111111 13689999884 444454333 3344444
Q ss_pred hCCCCCccEEEEEeccCCCCC
Q 000824 747 FGPSIWFNAIVVLTHAASAPP 767 (1266)
Q Consensus 747 FG~ei~k~tIVVLTKaDeL~P 767 (1266)
.|. ...+-||+||+|...+
T Consensus 208 kG~--EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 208 KGH--EDKIRVVLNKADQVDT 226 (532)
T ss_pred hCC--cceeEEEeccccccCH
Confidence 343 4678899999998754
No 311
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.32 E-value=0.0027 Score=67.99 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=73.6
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccc------cCcc---cceeEEEEEEEEECC-EEEEEEeCCCCCCCccchhchH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGT------DAFQ---MGTKKVQDVVGTVQG-IKVRVIDTPGLLPSWSDQRQNE 703 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftv------da~r---stTre~qei~geI~G-ipVtVIDTPGL~DS~gd~~~ne 703 (1266)
...|+|.|+-|+||||++.+|.-.....+ ..+. .+|...--....+.+ ..+.+++|||-. .-+
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~-------RF~ 82 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE-------RFK 82 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcH-------HHH
Confidence 56999999999999999999998764333 1222 355544444445555 889999999973 123
Q ss_pred HHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 704 KILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 704 eIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.++..+. ..-..+|++|++... .+.....++..+.... ..+.+|..||.|+..
T Consensus 83 fm~~~l~----~ga~gaivlVDss~~--~~~~a~~ii~f~~~~~----~ip~vVa~NK~DL~~ 135 (187)
T COG2229 83 FMWEILS----RGAVGAIVLVDSSRP--ITFHAEEIIDFLTSRN----PIPVVVAINKQDLFD 135 (187)
T ss_pred HHHHHHh----CCcceEEEEEecCCC--cchHHHHHHHHHhhcc----CCCEEEEeeccccCC
Confidence 3433322 222346666654332 2324455666655542 378999999999764
No 312
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.29 E-value=0.00047 Score=78.94 Aligned_cols=126 Identities=19% Similarity=0.222 Sum_probs=76.9
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE-CCEEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV-QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI-~GipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
....|.+||.||+|||||||+|++..+..-+. -.+|.+.....+.. .|..+.+.||-||... ..-.++..+..
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~dr-LFATLDpT~h~a~Lpsg~~vlltDTvGFisd-----LP~~LvaAF~A 250 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDR-LFATLDPTLHSAHLPSGNFVLLTDTVGFISD-----LPIQLVAAFQA 250 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccch-hheeccchhhhccCCCCcEEEEeechhhhhh-----CcHHHHHHHHH
Confidence 35799999999999999999999654333222 12233333333333 5788999999999742 23344444443
Q ss_pred hhhc-CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCC---CCCccEEEEEeccCCC
Q 000824 712 FIKK-TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGP---SIWFNAIVVLTHAASA 765 (1266)
Q Consensus 712 fLk~-~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~---ei~k~tIVVLTKaDeL 765 (1266)
.+.. ...|++|-|.+++..........++..|.. +|- ....++|=|-||.|.-
T Consensus 251 TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~-igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 251 TLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQ-IGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred HHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHh-cCCCcHHHHhHHHhhccccccc
Confidence 3332 357899999887754333222345555544 343 2235677788888854
No 313
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.28 E-value=0.00067 Score=79.26 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=61.0
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC-----------------EEEEEEeCCCCCCCcc
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG-----------------IKVRVIDTPGLLPSWS 697 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G-----------------ipVtVIDTPGL~DS~g 697 (1266)
+.+.|||.+++|||||+|+|++.....+..|+.||.+.......+.+ ..+.++|.||+...+.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 67899999999999999999998654666777777655444434333 3589999999976431
Q ss_pred ch-hchHHHHHHHHHhhhcCCCCEEEEEeecC
Q 000824 698 DQ-RQNEKILHSVKRFIKKTPPDIVLYLDRLD 728 (1266)
Q Consensus 698 d~-~~neeIlkeIKkfLk~~~pDVVLLVIrld 728 (1266)
.. -.....+..|+ ..|+++.|+++.
T Consensus 83 ~g~Glgn~fL~~ir------~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIR------EVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHH------hCCEEEEEEeCC
Confidence 11 12234445444 378899998764
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.27 E-value=0.00075 Score=76.20 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.1
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhc
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFD 656 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLG 656 (1266)
.....|.|+|++|+|||||++.|..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999876
No 315
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.24 E-value=0.001 Score=87.57 Aligned_cols=123 Identities=20% Similarity=0.197 Sum_probs=72.9
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCcccccc-C-------cccceeEEEEEEEEECCEEEEEEeCCCCCCCcc-chhc----
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTD-A-------FQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWS-DQRQ---- 701 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvd-a-------~rstTre~qei~geI~GipVtVIDTPGL~DS~g-d~~~---- 701 (1266)
.=.+|||++|+||||+|+.. |.. |... . ..+.|+.|.-. ....-++|||+|..-+.. ....
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~-~pl~~~~~~~~~~~~~~t~~c~ww----f~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLK-FPLAERLGAAALRGVGGTRNCDWW----FTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCC-CcCchhhccccccCCCCCcccceE----ecCCEEEEcCCCccccCCCcccccHHH
Confidence 35899999999999999876 432 2111 0 11224433322 234567999999653321 1111
Q ss_pred hHHHHHHHHHhhhcCCCCEEEEEeecCCCC-CCCCc--------HHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 702 NEKILHSVKRFIKKTPPDIVLYLDRLDMQN-RDFSD--------MPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 702 neeIlkeIKkfLk~~~pDVVLLVIrld~~r-~d~eD--------~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
=...+..++++-...+++.||+++++..-- .+..+ +.-|..|.+.||. ..++.|||||+|.+
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~--~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA--RFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC--CCCEEEEEecchhh
Confidence 223444445544446789999998775321 11111 2345566667764 68999999999977
No 316
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.18 E-value=0.00033 Score=81.81 Aligned_cols=64 Identities=30% Similarity=0.459 Sum_probs=56.6
Q ss_pred CCCCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCC
Q 000824 629 EPLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPS 695 (1266)
Q Consensus 629 e~lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS 695 (1266)
..++.++++-|+|-++|||||+||+|..+.+..++..++.|+..+.++ .+..|.|+|.||+.-.
T Consensus 247 ~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~---Ldk~i~llDsPgiv~~ 310 (435)
T KOG2484|consen 247 GELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK---LDKKIRLLDSPGIVPP 310 (435)
T ss_pred cccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee---ccCCceeccCCceeec
Confidence 346788999999999999999999999999999999999998877766 5778999999999754
No 317
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0019 Score=77.68 Aligned_cols=112 Identities=22% Similarity=0.286 Sum_probs=67.4
Q ss_pred CCCCccEEEEEccCCCCHHHHHHHHhcCc-cccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHH
Q 000824 630 PLDFSCTIMVLGKTGVGKSATINSIFDEV-KFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHS 708 (1266)
Q Consensus 630 ~lk~slrILLVGpTGVGKSTLINSLLGr~-vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlke 708 (1266)
.+.+++.+++|||+|.||||||.+|..+. ..+.+.+++..+ ...+ ..++|+|..+|.-.. .++ .
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT---vvsg--K~RRiTflEcp~Dl~---------~mi-D 129 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT---VVSG--KTRRITFLECPSDLH---------QMI-D 129 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE---Eeec--ceeEEEEEeChHHHH---------HHH-h
Confidence 34457788899999999999999999752 122233322111 1111 236788999884311 111 1
Q ss_pred HHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 709 VKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 709 IKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+.+ -+|+||++++..- .+.-+.+++|..++.. -..+++-|+||.|...
T Consensus 130 vaK-----IaDLVlLlIdgnf-GfEMETmEFLnil~~H----GmPrvlgV~ThlDlfk 177 (1077)
T COG5192 130 VAK-----IADLVLLLIDGNF-GFEMETMEFLNILISH----GMPRVLGVVTHLDLFK 177 (1077)
T ss_pred HHH-----hhheeEEEecccc-CceehHHHHHHHHhhc----CCCceEEEEeeccccc
Confidence 111 1578888866542 2333445555555443 3578999999999874
No 318
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.15 E-value=0.0014 Score=79.47 Aligned_cols=120 Identities=18% Similarity=0.188 Sum_probs=77.7
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCcccc-cc-CcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHH
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFG-TD-AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSV 709 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~vft-vd-a~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeI 709 (1266)
....||+|+|--|+||||||=+|+...-.. +. ..+..+-- ...+-..++..+|||..-.+ ....+.++|
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---advtPe~vpt~ivD~ss~~~------~~~~l~~Ei 77 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADVTPENVPTSIVDTSSDSD------DRLCLRKEI 77 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---CccCcCcCceEEEecccccc------hhHHHHHHH
Confidence 357899999999999999999999874321 11 11111110 11112457789999984422 234445565
Q ss_pred HHhhhcCCCCEEEEEeecCC-CCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 710 KRFIKKTPPDIVLYLDRLDM-QNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 710 KkfLk~~~pDVVLLVIrld~-~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+ ++|+|+++-..+. ..++--...-|-.|.+.||.....++|+|=||.|...
T Consensus 78 r------kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~ 129 (625)
T KOG1707|consen 78 R------KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD 129 (625)
T ss_pred h------hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc
Confidence 5 3788877765553 2222233445666788888888899999999999764
No 319
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.0073 Score=65.80 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=75.7
Q ss_pred CCCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHH
Q 000824 630 PLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILH 707 (1266)
Q Consensus 630 ~lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlk 707 (1266)
..+.-+.|+|+|.+|||||.++-.+... .|..+.....-.+......+++| +.+.++||.|-.. -..+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~-~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQer-------f~ti-- 77 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDD-SFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQER-------FRTI-- 77 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhc-cCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchh-------HHHH--
Confidence 4455689999999999999999777654 44433222222333444455566 4568999999621 1122
Q ss_pred HHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 708 SVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 708 eIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+..|.+ +++.+++|.+++...-.......++.|.+.-. -..+.|+|=||+|.-.
T Consensus 78 -~~sYyr--gA~gi~LvyDitne~Sfeni~~W~~~I~e~a~--~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 78 -TTAYYR--GAMGILLVYDITNEKSFENIRNWIKNIDEHAS--DDVVKILVGNKCDLEE 131 (207)
T ss_pred -HHHHHh--hcCeeEEEEEccchHHHHHHHHHHHHHHhhCC--CCCcEEEeeccccccc
Confidence 233332 57778888877654322233445666665532 2678999999999653
No 320
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.00 E-value=0.0045 Score=65.00 Aligned_cols=126 Identities=16% Similarity=0.234 Sum_probs=76.0
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE---CCEEEEEEeCCCCCCCccchhchHHHHH
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV---QGIKVRVIDTPGLLPSWSDQRQNEKILH 707 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI---~GipVtVIDTPGL~DS~gd~~~neeIlk 707 (1266)
....++++++|.-+||||+++-.|+--...+-..+..+-.++.....+- -.-.++|.||.|+.+. ..++-
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~------~~eLp- 78 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG------QQELP- 78 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCc------hhhhh-
Confidence 4457899999999999999998877433322222333332322222111 1246899999999642 11221
Q ss_pred HHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCCC
Q 000824 708 SVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPD 768 (1266)
Q Consensus 708 eIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~Pd 768 (1266)
+.|+. -+|.+++|.+... ..+..-..+|+.-.+.+......+++|+-|+.|...|.
T Consensus 79 --rhy~q--~aDafVLVYs~~d-~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~ 134 (198)
T KOG3883|consen 79 --RHYFQ--FADAFVLVYSPMD-PESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPR 134 (198)
T ss_pred --HhHhc--cCceEEEEecCCC-HHHHHHHHHHHHHHhhccccccccEEEEechhhcccch
Confidence 22332 3788888865432 12222335566555666666678899999999987653
No 321
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.0082 Score=65.05 Aligned_cols=121 Identities=15% Similarity=0.211 Sum_probs=71.2
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHH
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHS 708 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlke 708 (1266)
.+.-+.|+|+|-+|||||=|+-.+.+.. |+-......-.+.......+.| +++.|+||+|=. .....
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~-f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQE----------RFrti 74 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDT-FTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQE----------RFRTI 74 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCC-cchhhcceeeeEEEEEEeeecceEEEEEeeeccccH----------HHhhh
Confidence 3445799999999999999998877642 2111111112233444445555 568899999961 11111
Q ss_pred HHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 709 VKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 709 IKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
...|- ..+|.||+|.+++...-...-..-+..+.+.-.. ..+.++|-||+|...
T Consensus 75 t~syY--R~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~--~v~~lLVGNK~Dl~~ 128 (205)
T KOG0084|consen 75 TSSYY--RGAHGIIFVYDITKQESFNNVKRWIQEIDRYASE--NVPKLLVGNKCDLTE 128 (205)
T ss_pred hHhhc--cCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccC--CCCeEEEeeccccHh
Confidence 22222 3689999998887542211112233333333222 358999999999764
No 322
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.0081 Score=73.20 Aligned_cols=119 Identities=16% Similarity=0.139 Sum_probs=79.3
Q ss_pred CccEEEEEccCCCCHHHHHHHHhc---C----------------------cccccc-----CcccceeEEEEEEEEECCE
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFD---E----------------------VKFGTD-----AFQMGTKKVQDVVGTVQGI 682 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLG---r----------------------~vftvd-----a~rstTre~qei~geI~Gi 682 (1266)
..++++++|.+.+||||+.-.|+- . .++..+ .-++.|..+...+.+-...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 568999999999999999988762 1 011122 2467788877777777788
Q ss_pred EEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCC-----CcHHHHHHHHHHhCCCCCccEEE
Q 000824 683 KVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDF-----SDMPLLRTITDIFGPSIWFNAIV 757 (1266)
Q Consensus 683 pVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~-----eD~elLK~I~eiFG~ei~k~tIV 757 (1266)
.++++|+||..+ .... .|.. ...+|+.++|++++...+.. .+.+-...|.+.+| ..++||
T Consensus 256 ~~tliDaPGhkd-----Fi~n----mi~g---~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg---i~qliv 320 (603)
T KOG0458|consen 256 IVTLIDAPGHKD-----FIPN----MISG---ASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG---ISQLIV 320 (603)
T ss_pred eEEEecCCCccc-----cchh----hhcc---ccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC---cceEEE
Confidence 899999999643 1111 2222 23577777887776544321 22333444555667 588999
Q ss_pred EEeccCCCC
Q 000824 758 VLTHAASAP 766 (1266)
Q Consensus 758 VLTKaDeL~ 766 (1266)
++||.|...
T Consensus 321 aiNKmD~V~ 329 (603)
T KOG0458|consen 321 AINKMDLVS 329 (603)
T ss_pred EeecccccC
Confidence 999999875
No 323
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.89 E-value=0.0036 Score=64.53 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcC
Q 000824 636 TIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr 657 (1266)
.++|+|..|+||||+++.++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999999865
No 324
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.85 E-value=0.0022 Score=71.63 Aligned_cols=105 Identities=16% Similarity=0.298 Sum_probs=71.5
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhc-hHHHHHHHHHh
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQ-NEKILHSVKRF 712 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~-neeIlkeIKkf 712 (1266)
.-||+|+|-+.|||||++.+|..... ....|..+|..|.--...++|-.|.++|.||+.+.+..... ..+.+..
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviav---- 136 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAV---- 136 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEE----
Confidence 46999999999999999999997522 22357778888888888889999999999999875422211 1111110
Q ss_pred hhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhC
Q 000824 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFG 748 (1266)
Q Consensus 713 Lk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG 748 (1266)
...+|+||.|++++. ....+.+|+.=.+..|
T Consensus 137 --ArtaDlilMvLDatk---~e~qr~~le~ELe~vG 167 (364)
T KOG1486|consen 137 --ARTADLILMVLDATK---SEDQREILEKELEAVG 167 (364)
T ss_pred --eecccEEEEEecCCc---chhHHHHHHHHHHHhc
Confidence 124799999976653 2233445555445455
No 325
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.85 E-value=0.0026 Score=73.46 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=60.0
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEEC-----------------CEEEEEEeCCCCCCC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQ-----------------GIKVRVIDTPGLLPS 695 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~-----------------GipVtVIDTPGL~DS 695 (1266)
..+.|-+||.++||||||+|+|+...+- ...|+.||-+..+....+. ..+++|+|++||...
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 4679999999999999999999987654 6678888876554443332 245899999999764
Q ss_pred c--cchhchHHHHHHHHHhhhcCCCCEEEEEeec
Q 000824 696 W--SDQRQNEKILHSVKRFIKKTPPDIVLYLDRL 727 (1266)
Q Consensus 696 ~--gd~~~neeIlkeIKkfLk~~~pDVVLLVIrl 727 (1266)
+ |.... ...+..|+ .+|.++-|+++
T Consensus 98 As~G~GLG-N~FLs~iR------~vDaifhVVr~ 124 (391)
T KOG1491|consen 98 ASAGEGLG-NKFLSHIR------HVDAIFHVVRA 124 (391)
T ss_pred cccCcCch-HHHHHhhh------hccceeEEEEe
Confidence 3 22222 33444443 36777777664
No 326
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.75 E-value=0.0052 Score=58.87 Aligned_cols=103 Identities=23% Similarity=0.338 Sum_probs=58.7
Q ss_pred EEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcC
Q 000824 637 IMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKT 716 (1266)
Q Consensus 637 ILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~ 716 (1266)
|+|.|++|+|||+++..|+..- +.++.-+|.+-+.... .......+...+... ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------------------~~~~~~i~~~~~~~~~-~~~~~~~i~~~~~~~-~~~ 56 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------------------GFPFIEIDGSELISSY-AGDSEQKIRDFFKKA-KKS 56 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------------------TSEEEEEETTHHHTSS-TTHHHHHHHHHHHHH-HHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------------------cccccccccccccccc-ccccccccccccccc-ccc
Confidence 7899999999999999999752 3456677777765321 112223333333332 222
Q ss_pred CCCEEEEEeecCCCCCCC------CcHHHHHHHHHHhCCCCC--ccEEEEEeccC
Q 000824 717 PPDIVLYLDRLDMQNRDF------SDMPLLRTITDIFGPSIW--FNAIVVLTHAA 763 (1266)
Q Consensus 717 ~pDVVLLVIrld~~r~d~------eD~elLK~I~eiFG~ei~--k~tIVVLTKaD 763 (1266)
...+|||++.++.-.... .....+..|...+..... .++++|+|--+
T Consensus 57 ~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 57 AKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp STSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred ccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 224888988776432111 124456666665554222 35677766544
No 327
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.016 Score=62.96 Aligned_cols=117 Identities=15% Similarity=0.229 Sum_probs=68.6
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccc-eeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMG-TKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rst-Tre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
...|+++|..+|||||+|+..+-. .|.. +|+.+ -.+.......+.| +.+.++||+|= +.....|-
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd-~fd~-~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ----------ERFrslip 89 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYD-KFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLIP 89 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHh-hhcc-cccceeeeEEEEEEEEEcCcEEEEEEEecccH----------HHHhhhhh
Confidence 378999999999999999988753 2211 22221 2244444445555 45679999995 22222334
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCC--ccEEEEEeccCCCCC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIW--FNAIVVLTHAASAPP 767 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~--k~tIVVLTKaDeL~P 767 (1266)
.|++. ..++++|.+++...-. ..+=++|.......-. ..+++|-||.|++.+
T Consensus 90 sY~Rd--s~vaviVyDit~~~Sf---e~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 90 SYIRD--SSVAVIVYDITDRNSF---ENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred hhccC--CeEEEEEEeccccchH---HHHHHHHHHHHhccCCCceEEEEEcccccccch
Confidence 45543 5667777667643222 2233444444433222 456677799998864
No 328
>PRK01889 GTPase RsgA; Reviewed
Probab=96.73 E-value=0.0022 Score=74.52 Aligned_cols=58 Identities=31% Similarity=0.409 Sum_probs=37.1
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcc-------cceeEEEEEEEEECCEEEEEEeCCCCCC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQ-------MGTKKVQDVVGTVQGIKVRVIDTPGLLP 694 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~r-------stTre~qei~geI~GipVtVIDTPGL~D 694 (1266)
+.+++|+|++|+|||||+|.|++.....++.+. .+|...... .+.+ ...++||||+..
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~--~l~~-~~~l~DtpG~~~ 259 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELH--PLPS-GGLLIDTPGMRE 259 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEE--EecC-CCeecCCCchhh
Confidence 358999999999999999999997554333221 122221111 1222 236889999954
No 329
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.0098 Score=74.76 Aligned_cols=116 Identities=14% Similarity=0.050 Sum_probs=77.3
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccc------------cccC-----cccceeEEEEEEEEECC-EEEEEEeCCCCCC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKF------------GTDA-----FQMGTKKVQDVVGTVQG-IKVRVIDTPGLLP 694 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vf------------tvda-----~rstTre~qei~geI~G-ipVtVIDTPGL~D 694 (1266)
.-.+|.++++..+|||||.-+|+-..-. ..|. -|+.|...-.+...|.+ +.|++|||||..|
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 3469999999999999999998853211 1111 24556666667778886 9999999999976
Q ss_pred CccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 695 SWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 695 S~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
-. .++.+.++ - .|..++|+++.. ........+++...+. ..+.|+++||.|.+-
T Consensus 89 Ft------~EV~rslr----v--lDgavvVvdave-GV~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~ 142 (697)
T COG0480 89 FT------IEVERSLR----V--LDGAVVVVDAVE-GVEPQTETVWRQADKY-----GVPRILFVNKMDRLG 142 (697)
T ss_pred cH------HHHHHHHH----h--hcceEEEEECCC-CeeecHHHHHHHHhhc-----CCCeEEEEECccccc
Confidence 31 23333332 2 466666666553 3444444556655443 578999999999874
No 330
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=96.66 E-value=0.011 Score=62.65 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=65.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccce--eEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHH
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGT--KKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHS 708 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstT--re~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlke 708 (1266)
..+.|+|+|.+|||||||+-..... +.+....+| .+....+..++| .++.|+||+|-..- +....
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~---~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErF--RtLTp------ 78 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSN---TFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERF--RTLTP------ 78 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhc---ccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhh--hccCH------
Confidence 3579999999999999999877654 223333443 344555566666 56899999996210 00110
Q ss_pred HHHhhhcCCCCEEEEEeecCCCCCCCCcH-HHHHHHHHHhCCCCCccEEEEEeccCC
Q 000824 709 VKRFIKKTPPDIVLYLDRLDMQNRDFSDM-PLLRTITDIFGPSIWFNAIVVLTHAAS 764 (1266)
Q Consensus 709 IKkfLk~~~pDVVLLVIrld~~r~d~eD~-elLK~I~eiFG~ei~k~tIVVLTKaDe 764 (1266)
.|- .++-.+++|.+++.+ -+.... .-++.|-- +..+-..-.++|-||.|+
T Consensus 79 --Syy--RgaqGiIlVYDVT~R-dtf~kLd~W~~Eld~-Ystn~diikmlVgNKiDk 129 (209)
T KOG0080|consen 79 --SYY--RGAQGIILVYDVTSR-DTFVKLDIWLKELDL-YSTNPDIIKMLVGNKIDK 129 (209)
T ss_pred --hHh--ccCceeEEEEEccch-hhHHhHHHHHHHHHh-hcCCccHhHhhhcccccc
Confidence 111 245668888777643 121111 22333322 222222334578899984
No 331
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.034 Score=58.29 Aligned_cols=119 Identities=21% Similarity=0.230 Sum_probs=72.6
Q ss_pred CCCCccEEEEEccCCCCHHHHHHHHhcCccccccCccccee--EEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHH
Q 000824 630 PLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTK--KVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKI 705 (1266)
Q Consensus 630 ~lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTr--e~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeI 705 (1266)
..++=+.|+|||..|||||-|+...... .|.-+ +++|. +....+.++.| +++.++||+|-..
T Consensus 3 dykflfkivlvgnagvgktclvrrftqg-lfppg--qgatigvdfmiktvev~gekiklqiwdtagqer----------- 68 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQG-LFPPG--QGATIGVDFMIKTVEVNGEKIKLQIWDTAGQER----------- 68 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhcc-CCCCC--CCceeeeeEEEEEEEECCeEEEEEEeeccchHH-----------
Confidence 3455679999999999999999876642 33222 22332 33333445555 6788999999621
Q ss_pred HHHH-HHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 706 LHSV-KRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 706 lkeI-KkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.+.| ..|- ..+|++++|.+++......---+.|+.|.+.-.. ..-.|+|-||.|...
T Consensus 69 frsitqsyy--rsahalilvydiscqpsfdclpewlreie~yan~--kvlkilvgnk~d~~d 126 (213)
T KOG0095|consen 69 FRSITQSYY--RSAHALILVYDISCQPSFDCLPEWLREIEQYANN--KVLKILVGNKIDLAD 126 (213)
T ss_pred HHHHHHHHh--hhcceEEEEEecccCcchhhhHHHHHHHHHHhhc--ceEEEeeccccchhh
Confidence 1122 2222 2478899987776543332334567777665332 234678889999764
No 332
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.0071 Score=65.33 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=63.3
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
..+.|+|+|.+||||||++=......--......++ .........+.. +++.|.||+|-.. .+.+.
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIG-aaF~tktv~~~~~~ikfeIWDTAGQER-----------y~sla 71 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIG-AAFLTKTVTVDDNTIKFEIWDTAGQER-----------YHSLA 71 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccc-cEEEEEEEEeCCcEEEEEEEEcCCccc-----------ccccc
Confidence 357999999999999999866543211110000011 111112222333 7888999999842 11111
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEE--EEEeccCCCC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAI--VVLTHAASAP 766 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tI--VVLTKaDeL~ 766 (1266)
. +-..++.+.|+|.+++...-...-+.-++.|++. ...+++ +|-||+|+..
T Consensus 72 p-MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~----~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 72 P-MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQ----ASPNIVIALVGNKADLLE 124 (200)
T ss_pred c-ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhh----CCCCeEEEEecchhhhhh
Confidence 1 1123578899998777432111122334444443 334444 4789999875
No 333
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.48 E-value=0.0029 Score=71.42 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=23.4
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcC
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
...++.|+++|..|+|||||+..|.+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHH
Confidence 445789999999999999999988763
No 334
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.023 Score=68.83 Aligned_cols=114 Identities=13% Similarity=0.123 Sum_probs=77.9
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEEC---CEEEEEEeCCCCCCCccchhchHHHHHHH
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQ---GIKVRVIDTPGLLPSWSDQRQNEKILHSV 709 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~---GipVtVIDTPGL~DS~gd~~~neeIlkeI 709 (1266)
++..|.++|..--|||||+-+|=+..+....+ .+-|+.+-.++..+. ...|+||||||-.. +..+
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~Ea-GGITQhIGA~~v~~~~~~~~~itFiDTPGHeA-----------Ft~m 71 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEA-GGITQHIGAYQVPLDVIKIPGITFIDTPGHEA-----------FTAM 71 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccC-CceeeEeeeEEEEeccCCCceEEEEcCCcHHH-----------HHHH
Confidence 35689999999999999999998876654433 344666666666663 46899999999721 1111
Q ss_pred HHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 710 KRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 710 KkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
+.- --.=.|+++||+.++.. +-+...+.++.++. ...+++|..||.|+.
T Consensus 72 RaR-Ga~vtDIaILVVa~dDG-v~pQTiEAI~hak~-----a~vP~iVAiNKiDk~ 120 (509)
T COG0532 72 RAR-GASVTDIAILVVAADDG-VMPQTIEAINHAKA-----AGVPIVVAINKIDKP 120 (509)
T ss_pred Hhc-CCccccEEEEEEEccCC-cchhHHHHHHHHHH-----CCCCEEEEEecccCC
Confidence 110 00125899999988753 44445555555443 368999999999986
No 335
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.46 E-value=0.0028 Score=74.17 Aligned_cols=75 Identities=20% Similarity=0.191 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCCCCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCc
Q 000824 617 SAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSW 696 (1266)
Q Consensus 617 ~~LaeqLe~~~~e~lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~ 696 (1266)
-+|.+|+.+... -+..+.|-+||-++|||||+||+|-...++.+..+++.|+--+.+. .-..|.+||+||+....
T Consensus 292 I~llRQf~kLh~--dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYIt---LmkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 292 IQLLRQFAKLHS--DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYIT---LMKRIFLIDCPGVVYPS 366 (572)
T ss_pred HHHHHHHHhhcc--CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHH---HHhceeEecCCCccCCC
Confidence 356666665543 2346899999999999999999999999998888888776333222 23568899999997653
No 336
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=96.44 E-value=0.019 Score=68.73 Aligned_cols=113 Identities=18% Similarity=0.251 Sum_probs=73.7
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCcc-c-----------cccC---cccceeEEEEEEEEECCEEEEEEeCCCCCCCccch
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVK-F-----------GTDA---FQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQ 699 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~v-f-----------tvda---~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~ 699 (1266)
.+|+++-..--|||||+..|+.+.- | -+.. -++.|--...+...|++..|.||||||--|-.+
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG-- 83 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG-- 83 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc--
Confidence 4899999999999999999997521 1 1111 244555445556678999999999999876422
Q ss_pred hchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 700 RQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 700 ~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
.-+.+++- .|.||+++++...... ..+-++++-.+. .-+-|||+||.|..
T Consensus 84 -EVERvl~M---------VDgvlLlVDA~EGpMP-QTrFVlkKAl~~-----gL~PIVVvNKiDrp 133 (603)
T COG1217 84 -EVERVLSM---------VDGVLLLVDASEGPMP-QTRFVLKKALAL-----GLKPIVVINKIDRP 133 (603)
T ss_pred -hhhhhhhh---------cceEEEEEEcccCCCC-chhhhHHHHHHc-----CCCcEEEEeCCCCC
Confidence 22333322 5767777666544333 344455554332 45678999999964
No 337
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.04 Score=59.71 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=62.0
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEE--EEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKV--QDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~--qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
+.++++|-+|||||.|+-..+.+.-..+.. .|..+ -....++++ +++.|+||.|-. ......+
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd---~TiGvefg~r~~~id~k~IKlqiwDtaGqe----------~frsv~~ 73 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHD---LTIGVEFGARMVTIDGKQIKLQIWDTAGQE----------SFRSVTR 73 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCcccccc---ceeeeeeceeEEEEcCceEEEEEEecCCcH----------HHHHHHH
Confidence 588999999999999998888763322222 22211 112223444 678999999972 1222223
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.|-+ ..-.+|+|.+++.+ -+..- ..-|..++....+ .--++++-||+|+..
T Consensus 74 syYr--~a~GalLVydit~r-~sF~hL~~wL~D~rq~~~~--NmvImLiGNKsDL~~ 125 (216)
T KOG0098|consen 74 SYYR--GAAGALLVYDITRR-ESFNHLTSWLEDARQHSNE--NMVIMLIGNKSDLEA 125 (216)
T ss_pred HHhc--cCcceEEEEEccch-hhHHHHHHHHHHHHHhcCC--CcEEEEEcchhhhhc
Confidence 3332 34456778777643 11111 1223333333211 234556669999754
No 338
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=96.33 E-value=0.022 Score=59.72 Aligned_cols=114 Identities=15% Similarity=0.193 Sum_probs=66.2
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
..+|+|-+|||||+|+-..... -|.-+.......+....+..|.| +++.|.||+|- +..+.|..-.
T Consensus 10 kllIigDsgVGKssLl~rF~dd-tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq-----------ErFrtitsty 77 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADD-TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ-----------ERFRTITSTY 77 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhc-ccccceEEEeeeeEEEEEeecCCcEEEEEEeecccH-----------HHHHHHHHHH
Confidence 5678999999999998665543 22221111111233333444555 56788898885 2222332211
Q ss_pred hcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
-.++|.+++|.+.+.......-.+-|+.|...+. ..+-++|-||.|..
T Consensus 78 -yrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd---sv~~vLVGNK~d~~ 125 (198)
T KOG0079|consen 78 -YRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD---SVPKVLVGNKNDDP 125 (198)
T ss_pred -ccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc---cccceecccCCCCc
Confidence 2468999999877643222233445555555543 35678899999964
No 339
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.019 Score=62.88 Aligned_cols=120 Identities=15% Similarity=0.214 Sum_probs=73.9
Q ss_pred CCCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHHH
Q 000824 630 PLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKILH 707 (1266)
Q Consensus 630 ~lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIlk 707 (1266)
..+.-+.|+|+|-+|||||-|+...+.. .|..+.-.....+.......++| ++..|+||+|-.. ++
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrn-EF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQER-----------yr 77 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRN-EFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQER-----------YR 77 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhccc-ccCcccccceeEEEEeeceeecCcEEEEeeecccchhh-----------hc
Confidence 3455678999999999999998766643 44433322223344444556666 4558999999731 11
Q ss_pred HHH-HhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCC-CCCccEEEEEeccCCCC
Q 000824 708 SVK-RFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGP-SIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 708 eIK-kfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~-ei~k~tIVVLTKaDeL~ 766 (1266)
.|. .| -.+....|+|.+++.+ .+. ..+.++|.++... +....+++|-||+|+..
T Consensus 78 AitSaY--YrgAvGAllVYDITr~-~Tf--env~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 78 AITSAY--YRGAVGALLVYDITRR-QTF--ENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred cccchh--hcccceeEEEEechhH-HHH--HHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 111 11 1246778888777632 332 2556666665543 34567888889999754
No 340
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.032 Score=67.95 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=75.2
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE-CCEEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV-QGIKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI-~GipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
.++..|-++|..--|||||+-+|-+..++.... .+.|+.+--+.... .|..++|.||||-- .+..++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~-GGITQhIGAF~V~~p~G~~iTFLDTPGHa-----------AF~aMR 218 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEA-GGITQHIGAFTVTLPSGKSITFLDTPGHA-----------AFSAMR 218 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhc-CCccceeceEEEecCCCCEEEEecCCcHH-----------HHHHHH
Confidence 357799999999999999999998876654432 33444433332222 78999999999972 122222
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL 765 (1266)
.- -..-.|+|++|+.++.. .-+ ++++.|+.. .+...++||.+||+|..
T Consensus 219 aR-GA~vtDIvVLVVAadDG-Vmp---QT~EaIkhA--k~A~VpiVvAinKiDkp 266 (683)
T KOG1145|consen 219 AR-GANVTDIVVLVVAADDG-VMP---QTLEAIKHA--KSANVPIVVAINKIDKP 266 (683)
T ss_pred hc-cCccccEEEEEEEccCC-ccH---hHHHHHHHH--HhcCCCEEEEEeccCCC
Confidence 10 01125889999888753 332 345555433 33578999999999954
No 341
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.08 E-value=0.033 Score=66.37 Aligned_cols=115 Identities=20% Similarity=0.145 Sum_probs=80.5
Q ss_pred EEEEEccCCCCHHHHHHHHhcCcc--ccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVK--FGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~v--ftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
.|+..|..--|||||+-++.|... ..-..-++.|.+.-.+|.......+.|||.||..+ .++.+-.-
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~----------~i~~miag- 70 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPD----------FISNLLAG- 70 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHH----------HHHHHHhh-
Confidence 578889999999999999998532 22223467788887788888788999999999942 22222211
Q ss_pred hcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCC
Q 000824 714 KKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPP 767 (1266)
Q Consensus 714 k~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~P 767 (1266)
...+|..++|+..+. .......+.|. +.++|| .++.|||+||+|...+
T Consensus 71 -~~~~d~alLvV~~de-Gl~~qtgEhL~-iLdllg---i~~giivltk~D~~d~ 118 (447)
T COG3276 71 -LGGIDYALLVVAADE-GLMAQTGEHLL-ILDLLG---IKNGIIVLTKADRVDE 118 (447)
T ss_pred -hcCCceEEEEEeCcc-CcchhhHHHHH-HHHhcC---CCceEEEEeccccccH
Confidence 246888889988763 34444444443 345676 4788999999998753
No 342
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.02 E-value=0.0043 Score=68.49 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=32.5
Q ss_pred EEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHH----HHHHhCCCCCccEEEE
Q 000824 683 KVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRT----ITDIFGPSIWFNAIVV 758 (1266)
Q Consensus 683 pVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~----I~eiFG~ei~k~tIVV 758 (1266)
.+.++||||=.+- .........|.+.+.....-+++++++.. .... -..++.. +.-++ ...-+.|.|
T Consensus 92 ~y~l~DtPGQiEl----f~~~~~~~~i~~~L~~~~~~~~v~LvD~~--~~~~-~~~f~s~~L~s~s~~~--~~~lP~vnv 162 (238)
T PF03029_consen 92 DYLLFDTPGQIEL----FTHSDSGRKIVERLQKNGRLVVVFLVDSS--FCSD-PSKFVSSLLLSLSIML--RLELPHVNV 162 (238)
T ss_dssp SEEEEE--SSHHH----HHHSHHHHHHHHTSSS----EEEEEE-GG--G-SS-HHHHHHHHHHHHHHHH--HHTSEEEEE
T ss_pred cEEEEeCCCCEEE----EEechhHHHHHHHHhhhcceEEEEEEecc--cccC-hhhHHHHHHHHHHHHh--hCCCCEEEe
Confidence 5799999996431 12233444444455442334566664432 2221 1111111 11111 125799999
Q ss_pred EeccCCCC
Q 000824 759 LTHAASAP 766 (1266)
Q Consensus 759 LTKaDeL~ 766 (1266)
+||+|.+.
T Consensus 163 lsK~Dl~~ 170 (238)
T PF03029_consen 163 LSKIDLLS 170 (238)
T ss_dssp E--GGGS-
T ss_pred eeccCccc
Confidence 99999886
No 343
>PRK14845 translation initiation factor IF-2; Provisional
Probab=95.98 E-value=0.054 Score=70.94 Aligned_cols=103 Identities=13% Similarity=0.073 Sum_probs=58.9
Q ss_pred CCHHHHHHHHhcCccccccCcccceeEEEEEEEEEC------------------CEEEEEEeCCCCCCCccchhchHHHH
Q 000824 645 VGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQ------------------GIKVRVIDTPGLLPSWSDQRQNEKIL 706 (1266)
Q Consensus 645 VGKSTLINSLLGr~vftvda~rstTre~qei~geI~------------------GipVtVIDTPGL~DS~gd~~~neeIl 706 (1266)
++||||+-+|-+..+.... ..+-|+.+--++..+. -..+.|+||||... . ..+
T Consensus 472 ~~KTtLLD~iR~t~v~~~E-aGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~-----F--~~l- 542 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKE-AGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA-----F--TSL- 542 (1049)
T ss_pred cccccHHHHHhCCCccccc-CCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH-----H--HHH-
Confidence 4599999999987654321 2222332211111111 11289999999621 1 011
Q ss_pred HHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 707 HSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 707 keIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
.... ...+|++++|++++. .+.......++.+... ..++|+|+||+|..+
T Consensus 543 --r~~g--~~~aDivlLVVDa~~-Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 543 --RKRG--GSLADLAVLVVDINE-GFKPQTIEAINILRQY-----KTPFVVAANKIDLIP 592 (1049)
T ss_pred --HHhh--cccCCEEEEEEECcc-cCCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence 1111 234899999988764 2344445555554432 468999999999764
No 344
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.94 E-value=0.023 Score=58.31 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.3
Q ss_pred EEEEEccCCCCHHHHHHHHhcC
Q 000824 636 TIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr 657 (1266)
+|.++|+.|+||||++..|...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999998763
No 345
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=95.86 E-value=0.048 Score=63.79 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=23.0
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcC
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
..+.+++|||||.+||||++..|++.
T Consensus 101 ~~GPrv~vVGp~d~GKsTl~r~L~ny 126 (415)
T KOG2749|consen 101 SYGPRVMVVGPTDVGKSTLCRILLNY 126 (415)
T ss_pred ccCCEEEEECCCccchHHHHHHHHHH
Confidence 34779999999999999999999863
No 346
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=95.68 E-value=0.077 Score=62.12 Aligned_cols=118 Identities=17% Similarity=0.128 Sum_probs=75.3
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCcc---------------------------ccccC-----cccceeEEEEEEEEEC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVK---------------------------FGTDA-----FQMGTKKVQDVVGTVQ 680 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~v---------------------------ftvda-----~rstTre~qei~geI~ 680 (1266)
..+|++.+|..--||||||-.|+-... +-++. -++.|-++-..|..-.
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 357999999999999999999885311 01111 2344666665565567
Q ss_pred CEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEe
Q 000824 681 GIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLT 760 (1266)
Q Consensus 681 GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLT 760 (1266)
.++++|.||||-. ++.+.+..= .+.+|+.++++++-. .. .++-+--..|..++| .+|+++.+|
T Consensus 85 KRkFIiADTPGHe----------QYTRNMaTG--ASTadlAIlLVDAR~-Gv-l~QTrRHs~I~sLLG---IrhvvvAVN 147 (431)
T COG2895 85 KRKFIIADTPGHE----------QYTRNMATG--ASTADLAILLVDARK-GV-LEQTRRHSFIASLLG---IRHVVVAVN 147 (431)
T ss_pred cceEEEecCCcHH----------HHhhhhhcc--cccccEEEEEEecch-hh-HHHhHHHHHHHHHhC---CcEEEEEEe
Confidence 7899999999972 333332211 134677777655421 11 122233445666777 589999999
Q ss_pred ccCCCCC
Q 000824 761 HAASAPP 767 (1266)
Q Consensus 761 KaDeL~P 767 (1266)
|.|+...
T Consensus 148 KmDLvdy 154 (431)
T COG2895 148 KMDLVDY 154 (431)
T ss_pred eeccccc
Confidence 9998753
No 347
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.03 Score=73.72 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=71.2
Q ss_pred EEEEEccCCCCHHHHHHHHhcCcccc-c----cCcccceeEEEEEEEEECCEEEEEEeCCCCCCCcc-chhchHHH----
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFG-T----DAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWS-DQRQNEKI---- 705 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vft-v----da~rstTre~qei~geI~GipVtVIDTPGL~DS~g-d~~~neeI---- 705 (1266)
=.+|||++|+||||++..---+..+. . ..-...|+.|-- +.+-.-++|||.|-.-+.. ....+...
T Consensus 127 Wy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdw----wf~deaVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDW----WFTDEAVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred ceEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCc----ccccceEEEcCCcceecccCcchhhHHHHHHH
Confidence 47899999999999885533221111 0 011112555542 2345668999999654321 11223333
Q ss_pred HHHHHHhhhcCCCCEEEEEeecCCC-CCCCCcH-H-------HHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 706 LHSVKRFIKKTPPDIVLYLDRLDMQ-NRDFSDM-P-------LLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 706 lkeIKkfLk~~~pDVVLLVIrld~~-r~d~eD~-e-------lLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+.-|+++-...+++.|++.+++..- ..+..+. . -|++|.+.++ +..++.|++||.|+++
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~--~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH--ARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc--cCCceEEEEecccccc
Confidence 3344555445678988888766422 1121221 1 1444555554 5689999999999986
No 348
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.60 E-value=0.024 Score=63.05 Aligned_cols=120 Identities=15% Similarity=0.252 Sum_probs=70.5
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECC-EEEEEEeCCCCCCCccchhchHHHHHHHHHhh
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQG-IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFI 713 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~G-ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfL 713 (1266)
..|+|+|+||+||||+=-.++...++--....++|.++...+..+.| .-+.+.|.-|- +..++ .++
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgq----------e~fme---n~~ 71 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ----------EEFME---NYL 71 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCc----------HHHHH---HHH
Confidence 58999999999999988888764332222234455565554444444 67788888774 11221 222
Q ss_pred h------cCCCCEEEEEeecCCCCCCCCcHHHHHH-HHHHhCCCCCccEEEEEeccCCCCCC
Q 000824 714 K------KTPPDIVLYLDRLDMQNRDFSDMPLLRT-ITDIFGPSIWFNAIVVLTHAASAPPD 768 (1266)
Q Consensus 714 k------~~~pDVVLLVIrld~~r~d~eD~elLK~-I~eiFG~ei~k~tIVVLTKaDeL~Pd 768 (1266)
. .+..++++||.++....+. .|....+. |...+...-.-.+.+.++|.|.++.+
T Consensus 72 ~~q~d~iF~nV~vli~vFDves~e~~-~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 72 SSQEDNIFRNVQVLIYVFDVESREME-KDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred hhcchhhheeheeeeeeeeccchhhh-hhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 2 1346788999666543222 33333333 22222223345677888999998754
No 349
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=0.087 Score=58.21 Aligned_cols=117 Identities=9% Similarity=0.182 Sum_probs=64.4
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeE--EEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKK--VQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre--~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
+..|+|+|++++|||++.-.|.-. .++.+-.. ..+....+..-.+++||-||-. .....+.+
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~g------s~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~----------rlR~kl~e 101 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITG------SHRGTVTSIEPNEATYRLGSENVTLVDLPGHS----------RLRRKLLE 101 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcC------CccCeeeeeccceeeEeecCcceEEEeCCCcH----------HHHHHHHH
Confidence 358999999999999988666543 22222211 1222223344458999999973 22223333
Q ss_pred hhhc-CCCCEEEEEeecCCCCCCCCcH-HHH-HHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 712 FIKK-TPPDIVLYLDRLDMQNRDFSDM-PLL-RTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 712 fLk~-~~pDVVLLVIrld~~r~d~eD~-elL-K~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+++. ..+-.|+||++...-..+..+. ++| ..+....+..-..+++|.-||-|...
T Consensus 102 ~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 102 YLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred HccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 3332 2455677775543322222121 222 22333322334578889999999775
No 350
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.48 E-value=0.019 Score=64.78 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.3
Q ss_pred CccEEEEEccCCCCHHHHHHHHhc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFD 656 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLG 656 (1266)
...+|-|-|++|+|||||++.|..
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHH
Confidence 467999999999999999999875
No 351
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=95.48 E-value=0.32 Score=56.18 Aligned_cols=120 Identities=13% Similarity=0.050 Sum_probs=74.7
Q ss_pred CCCCccEEEEEccCCCCHHHHHHHHhcCcc-------c---ccc-----CcccceeEEEEEEEEECCEEEEEEeCCCCCC
Q 000824 630 PLDFSCTIMVLGKTGVGKSATINSIFDEVK-------F---GTD-----AFQMGTKKVQDVVGTVQGIKVRVIDTPGLLP 694 (1266)
Q Consensus 630 ~lk~slrILLVGpTGVGKSTLINSLLGr~v-------f---tvd-----a~rstTre~qei~geI~GipVtVIDTPGL~D 694 (1266)
..+...+|..+|...-|||||..+|...-. . ..+ .-++.|-.......+...+.+..||+||-.|
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 345678999999999999999999885310 0 011 1234455444555566788899999999842
Q ss_pred CccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 695 SWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 695 S~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
-+.+-|... .+.|..++|++++.....+.-..+| |.+..| ..++++.+||+|...
T Consensus 88 ---------YvKNMItgA---aqmDgAILVVsA~dGpmPqTrEHiL--larqvG---vp~ivvflnK~Dmvd 142 (394)
T COG0050 88 ---------YVKNMITGA---AQMDGAILVVAATDGPMPQTREHIL--LARQVG---VPYIVVFLNKVDMVD 142 (394)
T ss_pred ---------HHHHHhhhH---HhcCccEEEEEcCCCCCCcchhhhh--hhhhcC---CcEEEEEEecccccC
Confidence 222223322 2457667777776554443222222 233344 368899999999875
No 352
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=95.45 E-value=0.089 Score=57.04 Aligned_cols=109 Identities=18% Similarity=0.240 Sum_probs=63.7
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCcc-----ccccCcccceeEEEEEEEEECC--EEEEEEeCCCCCCCccchhchHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVK-----FGTDAFQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQNEKIL 706 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~v-----ftvda~rstTre~qei~geI~G--ipVtVIDTPGL~DS~gd~~~neeIl 706 (1266)
-+.|+++|-+|||||||.|......- ++++. ...|+++ .+++ ..+.|.||+|-.. .
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIga-dFltKev-----~Vd~~~vtlQiWDTAGQER-----------F 71 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGA-DFLTKEV-----QVDDRSVTLQIWDTAGQER-----------F 71 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccch-hheeeEE-----EEcCeEEEEEEEecccHHH-----------h
Confidence 47999999999999999999887532 12211 1123332 2334 4578999999521 1
Q ss_pred HHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhC------CCCCccEEEEEeccCC
Q 000824 707 HSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFG------PSIWFNAIVVLTHAAS 764 (1266)
Q Consensus 707 keIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG------~ei~k~tIVVLTKaDe 764 (1266)
+.|. ..--.+.|++++|.+++... . .+.|...++-|- ..-..+.||+-||.|.
T Consensus 72 qsLg-~aFYRgaDcCvlvydv~~~~-S---fe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~ 130 (210)
T KOG0394|consen 72 QSLG-VAFYRGADCCVLVYDVNNPK-S---FENLENWRKEFLIQASPQDPETFPFVILGNKIDV 130 (210)
T ss_pred hhcc-cceecCCceEEEEeecCChh-h---hccHHHHHHHHHHhcCCCCCCcccEEEEcccccC
Confidence 1111 11124689999997665431 1 122333333221 1234688999999995
No 353
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.37 E-value=0.0087 Score=61.54 Aligned_cols=56 Identities=23% Similarity=0.366 Sum_probs=34.7
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCC
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGL 692 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL 692 (1266)
..|+|+|++|+||||+++.|++......-....+|+... .+...+..+.++++..+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~--~g~~~~~~~~~~~~~~~ 57 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPR--PGEVDGVDYFFVSKEEF 57 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCC--CCCcCCcEEEEecHHHH
Confidence 479999999999999999999853221111122333221 23345666667665554
No 354
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.29 E-value=0.18 Score=51.26 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=23.6
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
..+-.++|+|++|+|||||++.|+|..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 345689999999999999999999964
No 355
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=0.06 Score=57.52 Aligned_cols=117 Identities=14% Similarity=0.093 Sum_probs=73.8
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCcccc-ccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFG-TDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~vft-vda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
+....|+++|--|+|||||++.|-...... +.+..+++ .+..|.|++++.+|--|-. ...+.-+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTS-----E~l~Ig~m~ftt~DLGGH~----------qArr~wk 82 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS-----EELSIGGMTFTTFDLGGHL----------QARRVWK 82 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCCh-----HHheecCceEEEEccccHH----------HHHHHHH
Confidence 445699999999999999999998764432 23334433 2345789999999988862 2223334
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+|+. .+|.++|++++-...+..+.+.-++.+...- .-.+-+.+|+.||.|...
T Consensus 83 dyf~--~v~~iv~lvda~d~er~~es~~eld~ll~~e-~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 83 DYFP--QVDAIVYLVDAYDQERFAESKKELDALLSDE-SLATVPFLILGNKIDIPY 135 (193)
T ss_pred HHHh--hhceeEeeeehhhHHHhHHHHHHHHHHHhHH-HHhcCcceeecccccCCC
Confidence 5554 3677777665544444434443344332211 115789999999999643
No 356
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.22 E-value=0.059 Score=67.38 Aligned_cols=115 Identities=16% Similarity=0.071 Sum_probs=70.8
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE------------------CCEEEEEEeCCCCCC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV------------------QGIKVRVIDTPGLLP 694 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI------------------~GipVtVIDTPGL~D 694 (1266)
++..+.++|..-.|||-++..|-+..+.... ..+.|+.+-.+|..+ .=--+.||||||...
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqege-aggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGE-AGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcccccccc-ccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 3678999999999999999999986543221 122222221122111 111268999999621
Q ss_pred CccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 695 SWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 695 S~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+.| ++..- ..-+++.|+|+++- +.+.+...+.|..|+.. ..+.||.|||+|.+-
T Consensus 553 -----Ftn------lRsrg-sslC~~aIlvvdIm-hGlepqtiESi~lLR~r-----ktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 553 -----FTN------LRSRG-SSLCDLAILVVDIM-HGLEPQTIESINLLRMR-----KTPFIVALNKIDRLY 606 (1064)
T ss_pred -----hhh------hhhcc-ccccceEEEEeehh-ccCCcchhHHHHHHHhc-----CCCeEEeehhhhhhc
Confidence 111 12110 12367888887774 55666666666666554 578999999999873
No 357
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.17 E-value=0.14 Score=54.41 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=23.8
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
+.+-.++|+|++|+|||||++.|+|-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 445699999999999999999999963
No 358
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=0.029 Score=60.27 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=68.0
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
+...+|+++|--|+||||++++|--.+.+++- .|.........+.++.+.|.|.-|-..- ..++ +.
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vttv----PTiGfnVE~v~ykn~~f~vWDvGGq~k~-------R~lW---~~ 80 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTV----PTIGFNVETVEYKNISFTVWDVGGQEKL-------RPLW---KH 80 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccCC----CccccceeEEEEcceEEEEEecCCCccc-------ccch---hh
Confidence 34689999999999999999998765555541 2322233334456899999999887321 1111 22
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCC--CCccEEEEEeccCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPS--IWFNAIVVLTHAAS 764 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~e--i~k~tIVVLTKaDe 764 (1266)
|.. ..+.++||++.+.+.+-.+-+ +.+..++... ...++++..||-|.
T Consensus 81 Y~~--~t~~lIfVvDS~Dr~Ri~eak---~eL~~~l~~~~l~~~~llv~aNKqD~ 130 (181)
T KOG0070|consen 81 YFQ--NTQGLIFVVDSSDRERIEEAK---EELHRMLAEPELRNAPLLVFANKQDL 130 (181)
T ss_pred hcc--CCcEEEEEEeCCcHHHHHHHH---HHHHHHHcCcccCCceEEEEechhhc
Confidence 222 367788887655433322222 2233333322 24567777788884
No 359
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.06 E-value=0.14 Score=48.39 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.9
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr 657 (1266)
...++|+|++|+|||++++.++..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999975
No 360
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.03 E-value=0.057 Score=63.93 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=22.0
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcC
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
.....+|||+|+.++|||||.+-|+++
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHH
Confidence 334679999999999999988776653
No 361
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02 E-value=0.18 Score=52.37 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999999964
No 362
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.79 E-value=0.11 Score=59.84 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhc
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFD 656 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLG 656 (1266)
....+|-|-|.+|+||||||-.|..
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHH
Confidence 3456999999999999999998874
No 363
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.79 E-value=0.17 Score=49.58 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.8
Q ss_pred EEEEEccCCCCHHHHHHHHhcC
Q 000824 636 TIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr 657 (1266)
.++|.|++|+|||+++..|++.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH
Confidence 3789999999999999999875
No 364
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=94.76 E-value=0.11 Score=63.37 Aligned_cols=119 Identities=16% Similarity=0.126 Sum_probs=74.5
Q ss_pred CCCCccEEEEEccCCCCHHHHHHHHhcCcc--------------ccccCcccceeEEEEEEEEECC---EEEEEEeCCCC
Q 000824 630 PLDFSCTIMVLGKTGVGKSATINSIFDEVK--------------FGTDAFQMGTKKVQDVVGTVQG---IKVRVIDTPGL 692 (1266)
Q Consensus 630 ~lk~slrILLVGpTGVGKSTLINSLLGr~v--------------ftvda~rstTre~qei~geI~G---ipVtVIDTPGL 692 (1266)
|.+.=.++.+|-..--|||||.-.|+.... ..+..-++.|...+.....+.+ +-+.+|||||-
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 333346899999999999999999985322 1222345667666655555555 88999999998
Q ss_pred CCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 693 LPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 693 ~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
-|-. -++.+.+. -++.+|+|+++... . +.+++..+...|. ..-.+|+|+||.|.-.
T Consensus 136 vDFs------~EVsRsla------ac~G~lLvVDA~qG-v---qAQT~anf~lAfe--~~L~iIpVlNKIDlp~ 191 (650)
T KOG0462|consen 136 VDFS------GEVSRSLA------ACDGALLVVDASQG-V---QAQTVANFYLAFE--AGLAIIPVLNKIDLPS 191 (650)
T ss_pred cccc------ceehehhh------hcCceEEEEEcCcC-c---hHHHHHHHHHHHH--cCCeEEEeeeccCCCC
Confidence 7632 12222322 25667777666532 2 2333444444443 2467999999999643
No 365
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.63 E-value=0.16 Score=52.97 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.+.|+|+.|+|||||++.|+|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999964
No 366
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.58 E-value=0.13 Score=53.18 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.3
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|+.|+|||||++.|+|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999964
No 367
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.11 Score=63.92 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.7
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCcc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVK 659 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~v 659 (1266)
..-.++|||++|+||||++|.|+|...
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCC
Confidence 356899999999999999999999644
No 368
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=94.47 E-value=0.089 Score=55.35 Aligned_cols=117 Identities=11% Similarity=0.083 Sum_probs=69.7
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
.+..+.+.|+|--++||||++|.++...-. .+-+.|+.......+-....+.+.|.||-... ..++.
T Consensus 17 ~k~emel~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkgnvtiklwD~gGq~rf-------rsmWe--- 83 (186)
T KOG0075|consen 17 WKEEMELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWE--- 83 (186)
T ss_pred HHheeeEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccCceEEEEEecCCCccH-------HHHHH---
Confidence 344679999999999999999999863111 11122332223333445688999999997421 12222
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCC--CccEEEEEeccCCC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSI--WFNAIVVLTHAASA 765 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei--~k~tIVVLTKaDeL 765 (1266)
.|. .+.++++||+++.....-...+.-|+.| +.... ..+++|+-||.|.-
T Consensus 84 ryc--R~v~aivY~VDaad~~k~~~sr~EL~~L---L~k~~l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 84 RYC--RGVSAIVYVVDAADPDKLEASRSELHDL---LDKPSLTGIPLLVLGNKIDLP 135 (186)
T ss_pred HHh--hcCcEEEEEeecCCcccchhhHHHHHHH---hcchhhcCCcEEEecccccCc
Confidence 222 2588999997765432222233334333 33322 47888888999853
No 369
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.40 E-value=0.09 Score=64.28 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=23.4
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
++-.++|+|++|+||||+++.|+|..
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999964
No 370
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.40 E-value=0.033 Score=53.46 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEEEEccCCCCHHHHHHHHhcC
Q 000824 636 TIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr 657 (1266)
+|+|.|++|+||||+.+.|+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 371
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.33 E-value=0.1 Score=62.92 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.0
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
++-.|+|+|++|+||||++|.|+|-.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999853
No 372
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.33 E-value=0.032 Score=56.37 Aligned_cols=54 Identities=24% Similarity=0.415 Sum_probs=33.7
Q ss_pred EEEEccCCCCHHHHHHHHhcCcccc-ccCcccceeEEEEEEEEECCEEEEEEeCCCC
Q 000824 637 IMVLGKTGVGKSATINSIFDEVKFG-TDAFQMGTKKVQDVVGTVQGIKVRVIDTPGL 692 (1266)
Q Consensus 637 ILLVGpTGVGKSTLINSLLGr~vft-vda~rstTre~qei~geI~GipVtVIDTPGL 692 (1266)
|+|+||||+||||+++.|+...... ....+.+|+.. ..++..|.+..+++...+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p--~~~e~~g~~~~~v~~~~~ 56 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKP--RPGEVDGVDYHFVSKEEF 56 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCC--CCCccCCceeEEeCHHHH
Confidence 7899999999999999999862111 01112233322 123456777777765554
No 373
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.31 E-value=0.037 Score=58.22 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=23.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+..|+|+|++|+||||+++.|++..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999863
No 374
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.31 E-value=0.32 Score=43.54 Aligned_cols=46 Identities=30% Similarity=0.346 Sum_probs=30.8
Q ss_pred EEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCC
Q 000824 637 IMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPS 695 (1266)
Q Consensus 637 ILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS 695 (1266)
|++.|+.|+||||+.+.|+..-.. ..++ +.. ++ .+.++|+|+..+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~--~g~~-----v~~----~~--d~iivD~~~~~~~ 47 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK--RGKR-----VLL----ID--DYVLIDTPPGLGL 47 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--CCCe-----EEE----EC--CEEEEeCCCCccc
Confidence 678899999999999998864211 0111 110 11 7899999998653
No 375
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.19 E-value=0.043 Score=51.00 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.7
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr 657 (1266)
...++|+|++|+||||++..|+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc
Confidence 358999999999999999999985
No 376
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.15 E-value=0.035 Score=58.48 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=22.2
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr 657 (1266)
...|+|+|+||+|||||+++|++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999985
No 377
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=94.02 E-value=0.19 Score=62.55 Aligned_cols=114 Identities=14% Similarity=0.185 Sum_probs=66.7
Q ss_pred cEEEEEccCCCCHHHHHHHHhcCccccc-----------cC-----cccceeEEEEEEEEE---C--CEEEEEEeCCCCC
Q 000824 635 CTIMVLGKTGVGKSATINSIFDEVKFGT-----------DA-----FQMGTKKVQDVVGTV---Q--GIKVRVIDTPGLL 693 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr~vftv-----------da-----~rstTre~qei~geI---~--GipVtVIDTPGL~ 693 (1266)
.++.|+|.-+.|||+|+..|..+..... +. -++++....-.+... . .+-+.++||||-.
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHV 208 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHV 208 (971)
T ss_pred EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcc
Confidence 5899999999999999999988643111 10 122221111111111 1 2447899999985
Q ss_pred CCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCC
Q 000824 694 PSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 694 DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~ 766 (1266)
+- . ++....+ . -.|.+++|+++.. .......++++...+. ..++++|+||.|.+.
T Consensus 209 nF-----~-DE~ta~l----~--~sDgvVlvvDv~E-GVmlntEr~ikhaiq~-----~~~i~vviNKiDRLi 263 (971)
T KOG0468|consen 209 NF-----S-DETTASL----R--LSDGVVLVVDVAE-GVMLNTERIIKHAIQN-----RLPIVVVINKVDRLI 263 (971)
T ss_pred cc-----h-HHHHHHh----h--hcceEEEEEEccc-CceeeHHHHHHHHHhc-----cCcEEEEEehhHHHH
Confidence 42 1 2222222 2 3677777766543 3444445556555443 478999999999763
No 378
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.00 E-value=0.037 Score=54.27 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=23.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 34589999999999999999999963
No 379
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.99 E-value=0.18 Score=56.78 Aligned_cols=24 Identities=25% Similarity=0.650 Sum_probs=21.9
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr 657 (1266)
..+++|-|..|+||||++.+|+.+
T Consensus 52 annvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHH
Confidence 458999999999999999999974
No 380
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=93.94 E-value=0.38 Score=56.35 Aligned_cols=116 Identities=15% Similarity=0.222 Sum_probs=65.7
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC---cccc---ccCcccceeEEEEEEEEE---------CCEEEEEEeCCCCCCCccc
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE---VKFG---TDAFQMGTKKVQDVVGTV---------QGIKVRVIDTPGLLPSWSD 698 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr---~vft---vda~rstTre~qei~geI---------~GipVtVIDTPGL~DS~gd 698 (1266)
.++|-++|..-+|||||..+|..- .+|. .+.-++.|.+.--....+ ...++++||.||--
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa----- 81 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA----- 81 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH-----
Confidence 479999999999999999888742 1221 112233332211111111 12457999999972
Q ss_pred hhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCCCCC
Q 000824 699 QRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPP 767 (1266)
Q Consensus 699 ~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDeL~P 767 (1266)
.+++.|-.-.. =+|+.++|+++....-+ ...+.| . .|....++.+||++|.|.++.
T Consensus 82 -----sLIRtiiggaq--iiDlm~lviDv~kG~Qt-QtAEcL-i----ig~~~c~klvvvinkid~lpE 137 (522)
T KOG0461|consen 82 -----SLIRTIIGGAQ--IIDLMILVIDVQKGKQT-QTAECL-I----IGELLCKKLVVVINKIDVLPE 137 (522)
T ss_pred -----HHHHHHHhhhh--eeeeeeEEEehhccccc-ccchhh-h----hhhhhccceEEEEeccccccc
Confidence 23333322111 26888888877543222 111111 1 233346889999999999874
No 381
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.87 E-value=0.037 Score=64.46 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=23.8
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKF 660 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vf 660 (1266)
.+-.++|+||+|+|||||++.|+|-...
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~~ 55 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3457999999999999999999996443
No 382
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.86 E-value=0.65 Score=49.14 Aligned_cols=115 Identities=15% Similarity=0.201 Sum_probs=65.1
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccce--eEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGT--KKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstT--re~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKk 711 (1266)
-..|+++|..-|||||++-.-++.. |+..-++... -.+..++..-..+++.|.||.|... ++.|..
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddS-Ft~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr-----------yrtiTT 88 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDS-FTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER-----------YRTITT 88 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccc-cccceeeeeeeeEEEeEeeecccEEEEEEEecccchh-----------hhHHHH
Confidence 4599999999999999999988852 2221111111 1222333333457899999999831 333322
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCC--ccEEEEEeccCCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIW--FNAIVVLTHAASA 765 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~--k~tIVVLTKaDeL 765 (1266)
+...+.+.++++.+++.. +....++........-.| -++|+|-||||.-
T Consensus 89 -ayyRgamgfiLmyDitNe----eSf~svqdw~tqIktysw~naqvilvgnKCDmd 139 (193)
T KOG0093|consen 89 -AYYRGAMGFILMYDITNE----ESFNSVQDWITQIKTYSWDNAQVILVGNKCDMD 139 (193)
T ss_pred -HHhhccceEEEEEecCCH----HHHHHHHHHHHHheeeeccCceEEEEecccCCc
Confidence 112357888888766532 112222222111121134 5688999999964
No 383
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=93.84 E-value=0.16 Score=56.84 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=43.4
Q ss_pred cEEEEEccCCCCHHHHHHHHhcC-ccccccC-cccceeEEEEEEEEE---CCEEEEEEeCCCCCC
Q 000824 635 CTIMVLGKTGVGKSATINSIFDE-VKFGTDA-FQMGTKKVQDVVGTV---QGIKVRVIDTPGLLP 694 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr-~vftvda-~rstTre~qei~geI---~GipVtVIDTPGL~D 694 (1266)
..|.|+|+...|||.|+|.|++. ..|.+.. ..++|+.+-...... .+..|.++||.|+.+
T Consensus 22 ~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 22 AVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp EEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred EEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 47889999999999999999985 3566544 466776543222111 457899999999987
No 384
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.80 E-value=0.26 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=21.0
Q ss_pred ccEEEEEccCCCCHHHHHHHHhc
Q 000824 634 SCTIMVLGKTGVGKSATINSIFD 656 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLG 656 (1266)
+-+++|+|+.|+||||++.+|++
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 45899999999999999999984
No 385
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.79 E-value=0.043 Score=61.52 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.3
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCcc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVK 659 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~v 659 (1266)
.+=.|.|+||+|+|||||+|.|+|-..
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999999543
No 386
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.78 E-value=0.17 Score=54.50 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.7
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
+-.++|+|+.|+|||||++.|.+..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 3578999999999999999998743
No 387
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.78 E-value=0.05 Score=58.45 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=22.7
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcC
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
..+..|+|+|++|+||||+++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35678999999999999999999864
No 388
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=93.75 E-value=0.061 Score=67.54 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=44.4
Q ss_pred EEEEEeCCCCCCCccchhchHHHHHHHHHhhhc--CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEe
Q 000824 683 KVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKK--TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLT 760 (1266)
Q Consensus 683 pVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~--~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLT 760 (1266)
++++||.||+-... .....+.+..+|+..+.. .+++++++.+.... .+......|+...+. ..-..+++-|+|
T Consensus 133 ~lTLvDlPG~tkvp-v~dqp~di~~qI~~mi~~yi~~~~~iILav~~an--~d~ats~alkiarev--Dp~g~RTigvit 207 (657)
T KOG0446|consen 133 NLTLVDLPGLTKVP-VADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN--SDIATSPALVVAREV--DPGGSRTLEVIT 207 (657)
T ss_pred hhhhcCCCCCcccc-cCCCCccHHHHHHHHHHHhccccchhhhhccchh--hhhhcCHHHHHHHhh--CCCccchhHHhh
Confidence 36899999996532 112233444444443322 24666666543322 222233345555554 233689999999
Q ss_pred ccCCCC
Q 000824 761 HAASAP 766 (1266)
Q Consensus 761 KaDeL~ 766 (1266)
|+|..+
T Consensus 208 K~Dlmd 213 (657)
T KOG0446|consen 208 KFDFMD 213 (657)
T ss_pred hHHhhh
Confidence 999875
No 389
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.64 E-value=0.28 Score=49.88 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.0
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999963
No 390
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.59 E-value=0.26 Score=66.19 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=42.8
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCcc-----ccccCcccce---eEEEEEEEEECCEEEEEEeCCCCC-CCccchhchHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVK-----FGTDAFQMGT---KKVQDVVGTVQGIKVRVIDTPGLL-PSWSDQRQNEK 704 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~v-----ftvda~rstT---re~qei~geI~GipVtVIDTPGL~-DS~gd~~~nee 704 (1266)
+-+|.+||+||+||||++++|+.-.- +..|...+.+ .+....-..|..-|+.|=.|--+. |+ -++..+++
T Consensus 1166 ~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDP-f~e~sD~~ 1244 (1381)
T KOG0054|consen 1166 GEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDP-FDEYSDDE 1244 (1381)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCc-ccccCHHH
Confidence 45899999999999999999997321 1222221111 111111122344455555554432 32 24566778
Q ss_pred HHHHHHH
Q 000824 705 ILHSVKR 711 (1266)
Q Consensus 705 IlkeIKk 711 (1266)
+++.+.+
T Consensus 1245 IW~ALe~ 1251 (1381)
T KOG0054|consen 1245 IWEALER 1251 (1381)
T ss_pred HHHHHHH
Confidence 8777654
No 391
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.56 E-value=0.051 Score=59.12 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=22.0
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr 657 (1266)
.-+++|+|++|+|||||+|.|+|-
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhc
Confidence 458999999999999999999985
No 392
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.50 E-value=0.055 Score=57.70 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=33.8
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTP 690 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTP 690 (1266)
++.|+|+||+|+||||+++.|+.+..-.....+-||+.. ..++.+|....+|+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~--r~gE~~G~dY~fvs~~ 58 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP--RPGDEEGKTYFFLTIE 58 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC--CCCCCCCceeEeCCHH
Confidence 568999999999999999999986311111122333322 2234556665555433
No 393
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.49 E-value=0.83 Score=52.98 Aligned_cols=39 Identities=26% Similarity=0.496 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCCCCCCCccEEEEEccCCCCHHHHHHHHhcC
Q 000824 617 SAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 617 ~~LaeqLe~~~~e~lk~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
..|...+...... ..+..++|.|++|+|||++++.++..
T Consensus 40 ~~l~~~l~~~~~~--~~~~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 40 EELAFALRPALRG--SRPLNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred HHHHHHHHHHhCC--CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3455555443221 22357899999999999999999874
No 394
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.48 E-value=0.2 Score=61.65 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=25.0
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCcccccc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTD 663 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvd 663 (1266)
.+-+|+|+||.|+|||||++.|+|......+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G 377 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSG 377 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCc
Confidence 4569999999999999999999886443333
No 395
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=93.39 E-value=0.053 Score=65.10 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=53.5
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEE---E-EEEECC--EEEEEE-----eCCCCCCCccch
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQD---V-VGTVQG--IKVRVI-----DTPGLLPSWSDQ 699 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qe---i-~geI~G--ipVtVI-----DTPGL~DS~gd~ 699 (1266)
+..+-+++|+|++|+||||++|.|++.....+..+......... + ...+.+ .+-++| |+||.....
T Consensus 154 i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~--- 230 (434)
T PRK08472 154 CGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYG--- 230 (434)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHH---
Confidence 34466999999999999999999997532211111100000000 0 001111 134567 888875321
Q ss_pred hchHHHHHHHHHhhhcCCCCEEEEEeecC
Q 000824 700 RQNEKILHSVKRFIKKTPPDIVLYLDRLD 728 (1266)
Q Consensus 700 ~~neeIlkeIKkfLk~~~pDVVLLVIrld 728 (1266)
-...-.+.+|+...+-|++|++++++
T Consensus 231 ---~~~a~~iAEyFrd~G~~Vll~~DslT 256 (434)
T PRK08472 231 ---AFCAMSVAEYFKNQGLDVLFIMDSVT 256 (434)
T ss_pred ---HHHHHHHHHHHHHcCCCEEEecccch
Confidence 12234667777777889999988776
No 396
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.19 E-value=0.51 Score=51.32 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.2
Q ss_pred cEEEEEccCCCCHHHHHHHHhc
Q 000824 635 CTIMVLGKTGVGKSATINSIFD 656 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLG 656 (1266)
.+++|.|+.|+||||+++.|..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6899999999999999999874
No 397
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=93.18 E-value=0.53 Score=47.53 Aligned_cols=98 Identities=19% Similarity=0.231 Sum_probs=54.4
Q ss_pred EEEccCCCCHHHHHHHHhcC------ccccccC-cccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHH
Q 000824 638 MVLGKTGVGKSATINSIFDE------VKFGTDA-FQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 638 LLVGpTGVGKSTLINSLLGr------~vftvda-~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIK 710 (1266)
+.-++.|+||||+--.|+.. ....++. +..... .+.++|||||+.... .....
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~----------~yd~VIiD~p~~~~~--------~~~~~-- 63 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL----------DYDYIIIDTGAGISD--------NVLDF-- 63 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC----------CCCEEEEECCCCCCH--------HHHHH--
Confidence 45578999999987666642 1112221 111111 167899999986431 11111
Q ss_pred HhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccC
Q 000824 711 RFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAA 763 (1266)
Q Consensus 711 kfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaD 763 (1266)
+. ..|.++++...+..... .-..+++.+.+.. ...++.+|+|+++
T Consensus 64 --l~--~aD~vviv~~~~~~s~~-~~~~~l~~l~~~~---~~~~~~lVvN~~~ 108 (139)
T cd02038 64 --FL--AADEVIVVTTPEPTSIT-DAYALIKKLAKQL---RVLNFRVVVNRAE 108 (139)
T ss_pred --HH--hCCeEEEEcCCChhHHH-HHHHHHHHHHHhc---CCCCEEEEEeCCC
Confidence 22 25788888666533211 1134455554432 2457889999987
No 398
>PTZ00243 ABC transporter; Provisional
Probab=93.13 E-value=0.2 Score=68.49 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.9
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr 657 (1266)
+-+|+|||+||+||||+++.|++-
T Consensus 1336 GekVaIVGrTGSGKSTLl~lLlrl 1359 (1560)
T PTZ00243 1336 REKVGIVGRTGSGKSTLLLTFMRM 1359 (1560)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999985
No 399
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=93.11 E-value=0.065 Score=62.88 Aligned_cols=120 Identities=16% Similarity=0.153 Sum_probs=69.4
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc------ccccc------CcccceeEEEEE-------------EEEE--------
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV------KFGTD------AFQMGTKKVQDV-------------VGTV-------- 679 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~------vftvd------a~rstTre~qei-------------~geI-------- 679 (1266)
...|++++|---+|||||+--|.... .+... ..++....+... |...
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 47899999999999999998776321 11111 111111111100 0000
Q ss_pred -CCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEE
Q 000824 680 -QGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVV 758 (1266)
Q Consensus 680 -~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVV 758 (1266)
...-++|||.+|-.. +++....-+.-..||+.++|++++. ......++-|-.+..+ ..+..|+
T Consensus 246 ~SSKlvTfiDLAGh~k----------Y~~TTi~gLtgY~Ph~A~LvVsA~~-Gi~~tTrEHLgl~~AL-----~iPfFvl 309 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAK----------YQKTTIHGLTGYTPHFACLVVSADR-GITWTTREHLGLIAAL-----NIPFFVL 309 (591)
T ss_pred hhcceEEEeecccchh----------hheeeeeecccCCCceEEEEEEcCC-CCccccHHHHHHHHHh-----CCCeEEE
Confidence 012368888888631 2221111222356899999988874 4555555556655544 5789999
Q ss_pred EeccCCCCCC
Q 000824 759 LTHAASAPPD 768 (1266)
Q Consensus 759 LTKaDeL~Pd 768 (1266)
+||.|...+.
T Consensus 310 vtK~Dl~~~~ 319 (591)
T KOG1143|consen 310 VTKMDLVDRQ 319 (591)
T ss_pred EEeeccccch
Confidence 9999988654
No 400
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.11 E-value=0.074 Score=56.33 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=23.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999999963
No 401
>PLN03232 ABC transporter C family member; Provisional
Probab=93.10 E-value=0.19 Score=68.53 Aligned_cols=24 Identities=42% Similarity=0.689 Sum_probs=22.0
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr 657 (1266)
+-+|+|||+||+||||+++.|++-
T Consensus 1262 GekvaIVG~SGSGKSTL~~lL~rl 1285 (1495)
T PLN03232 1262 SEKVGVVGRTGAGKSSMLNALFRI 1285 (1495)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999985
No 402
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.05 E-value=0.064 Score=57.25 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.9
Q ss_pred cEEEEEccCCCCHHHHHHHHhcC
Q 000824 635 CTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr 657 (1266)
..|+|+|+||+|||||+++|++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999875
No 403
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.05 E-value=0.51 Score=52.97 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=24.7
Q ss_pred CCCCccEEEEEccCCCCHHHHHHHHhcC
Q 000824 630 PLDFSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 630 ~lk~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
++..+-+++|+|+.|+||||+++.|++.
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~ 39 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANA 39 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4556779999999999999999999985
No 404
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.01 E-value=0.05 Score=58.86 Aligned_cols=56 Identities=23% Similarity=0.383 Sum_probs=36.4
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPG 691 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPG 691 (1266)
.+..|+|.||+||||||++..|+.+..+..+ ...||+. ...++++|+...||+.--
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~S-VS~TTR~--pR~gEv~G~dY~Fvs~~E 58 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFS-VSATTRK--PRPGEVDGVDYFFVTEEE 58 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEE-EEeccCC--CCCCCcCCceeEeCCHHH
Confidence 3568999999999999999999987622211 1223332 223566777766655433
No 405
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.95 E-value=0.08 Score=57.22 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999963
No 406
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.82 E-value=0.08 Score=56.20 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.6
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+ .++|+|++|+|||||++.|+|-.
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 45 89999999999999999999953
No 407
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.82 E-value=0.079 Score=61.88 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=22.4
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr 657 (1266)
..+|+|.|+||+|||||+|+|++.
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcc
Confidence 569999999999999999999985
No 408
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.76 E-value=0.91 Score=50.10 Aligned_cols=122 Identities=11% Similarity=0.094 Sum_probs=58.5
Q ss_pred ccEEEEEccCCCCHHHHHHHHhc-CccccccCcccceeEEEEEEEEECCEEEEEEeCC-CCCCCccchhchHHHHHHHHH
Q 000824 634 SCTIMVLGKTGVGKSATINSIFD-EVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTP-GLLPSWSDQRQNEKILHSVKR 711 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLG-r~vftvda~rstTre~qei~geI~GipVtVIDTP-GL~DS~gd~~~neeIlkeIKk 711 (1266)
+-.++|.|+.|.||||++..|.+ ...+..+.+..+..-...++ +.+ ++-+-+. .+.. + ...-..-+++++.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~---~~i-~~~~~~~d~~~~--~-~StF~~e~~~~~~ 103 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIF---DSV-LTRMGASDSIQH--G-MSTFMVELSETSH 103 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEecc---ceE-EEEecCcccccc--c-cchHHHHHHHHHH
Confidence 45789999999999999999988 33333333332221111111 111 1111111 1111 0 1111223445555
Q ss_pred hhhcCCCCEEEEEeecCCCCCCCCcHHH-HHHHHHHhCCCCCccEEEEEeccCC
Q 000824 712 FIKKTPPDIVLYLDRLDMQNRDFSDMPL-LRTITDIFGPSIWFNAIVVLTHAAS 764 (1266)
Q Consensus 712 fLk~~~pDVVLLVIrld~~r~d~eD~el-LK~I~eiFG~ei~k~tIVVLTKaDe 764 (1266)
.++.....-+++++-+.. ..+..|... ...+.+.+-.. ...++|+.||--.
T Consensus 104 il~~~~~~sLvllDE~~~-gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~ 155 (222)
T cd03287 104 ILSNCTSRSLVILDELGR-GTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPS 155 (222)
T ss_pred HHHhCCCCeEEEEccCCC-CCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHH
Confidence 565554455667766532 222233222 23333333221 3568888888654
No 409
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.75 E-value=0.089 Score=55.26 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=21.1
Q ss_pred cEEEEEccCCCCHHHHHHHHhcC
Q 000824 635 CTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr 657 (1266)
..|+|+|++|+||||+++.|++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999875
No 410
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.73 E-value=0.092 Score=56.18 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.8
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
.+-.++|+|+.|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999996
No 411
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.70 E-value=0.091 Score=55.94 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 45589999999999999999999963
No 412
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.70 E-value=0.092 Score=55.74 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|+.|+|||||++.|+|..
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999963
No 413
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.59 E-value=0.095 Score=58.18 Aligned_cols=27 Identities=26% Similarity=0.301 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCcc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVK 659 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~v 659 (1266)
.+-.++|+||+|+|||||+|.|.+-..
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 455899999999999999999998543
No 414
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.57 E-value=0.097 Score=55.77 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.9
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
.+-.++|+|++|+|||||++.|+|.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999995
No 415
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=92.57 E-value=0.095 Score=56.25 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=23.3
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999999999999963
No 416
>PRK13695 putative NTPase; Provisional
Probab=92.56 E-value=0.7 Score=47.98 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.5
Q ss_pred cEEEEEccCCCCHHHHHHHHhcC
Q 000824 635 CTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr 657 (1266)
++|+|.|++|+||||++..|++.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998764
No 417
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.54 E-value=0.41 Score=54.75 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.3
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
+..-|++||.||+||||++.+++|.
T Consensus 126 kRGLviiVGaTGSGKSTtmAaMi~y 150 (375)
T COG5008 126 KRGLVIIVGATGSGKSTTMAAMIGY 150 (375)
T ss_pred cCceEEEECCCCCCchhhHHHHhcc
Confidence 3457899999999999999999996
No 418
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.52 E-value=0.1 Score=51.31 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.8
Q ss_pred EEEEEccCCCCHHHHHHHHhcC
Q 000824 636 TIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr 657 (1266)
.|+|+|++|+||||++..|+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999854
No 419
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.52 E-value=0.098 Score=55.38 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999963
No 420
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.48 E-value=0.1 Score=54.54 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=23.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|+.|+|||||++.|+|..
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999953
No 421
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.45 E-value=0.1 Score=56.17 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.4
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999999964
No 422
>PLN03130 ABC transporter C family member; Provisional
Probab=92.43 E-value=0.27 Score=67.55 Aligned_cols=24 Identities=38% Similarity=0.685 Sum_probs=21.9
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr 657 (1266)
+-+|+|||+||+||||+++.|++-
T Consensus 1265 GekVaIVGrSGSGKSTLl~lL~rl 1288 (1622)
T PLN03130 1265 SEKVGIVGRTGAGKSSMLNALFRI 1288 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 448999999999999999999984
No 423
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.40 E-value=0.1 Score=53.91 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEccCCCCHHHHHHHHhcC
Q 000824 636 TIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr 657 (1266)
.|+|+|++|+||||+++.|++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 424
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=92.39 E-value=0.29 Score=66.83 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.8
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr 657 (1266)
+-+|+|||+||+||||+++.|++-
T Consensus 1312 GekiaIVGrTGsGKSTL~~lL~rl 1335 (1522)
T TIGR00957 1312 GEKVGIVGRTGAGKSSLTLGLFRI 1335 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999984
No 425
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.38 E-value=0.1 Score=55.53 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999863
No 426
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.37 E-value=0.1 Score=54.92 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=23.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 35589999999999999999999963
No 427
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.37 E-value=0.098 Score=55.97 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999963
No 428
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=92.36 E-value=0.11 Score=55.53 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=23.3
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|+.|+|||||++.|+|..
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999963
No 429
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.35 E-value=0.1 Score=55.74 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.5
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
.+..|+|+|++|+|||||++.|++.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 430
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=92.33 E-value=0.11 Score=56.27 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999999953
No 431
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.32 E-value=0.11 Score=55.10 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=22.7
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
.+-.++|+|++|+|||||++.|+|.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4558999999999999999999996
No 432
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=92.31 E-value=0.11 Score=54.95 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|+.|+|||||++.|+|..
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999963
No 433
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.29 E-value=0.11 Score=55.14 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|+.|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999963
No 434
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.21 E-value=0.11 Score=55.04 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.0
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhc
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFD 656 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLG 656 (1266)
..+-+++|+|++|+|||||+|.|++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3456999999999999999999984
No 435
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.19 E-value=0.12 Score=54.88 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|+.|+|||||++.|+|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999963
No 436
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.18 E-value=3.1 Score=53.91 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.2
Q ss_pred cEEEEEccCCCCHHHHHHHHhc
Q 000824 635 CTIMVLGKTGVGKSATINSIFD 656 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLG 656 (1266)
..++|+||||||||++...|+.
T Consensus 540 ~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 540 ASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4688999999999999988875
No 437
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.15 E-value=0.12 Score=55.13 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=23.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|+.|+|||||++.|+|-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999963
No 438
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=92.15 E-value=0.59 Score=49.81 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=19.5
Q ss_pred cEEEEEccCCCCHHHHHHHHh
Q 000824 635 CTIMVLGKTGVGKSATINSIF 655 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLL 655 (1266)
.+++|.|+.|+|||||+..|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999988
No 439
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=92.14 E-value=0.11 Score=55.09 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45689999999999999999999963
No 440
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=92.13 E-value=0.6 Score=49.16 Aligned_cols=82 Identities=22% Similarity=0.270 Sum_probs=54.0
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCcccc---ccCcccceeEEEEEEEEECC-EEEEEEeCCCCCCCccchhchHHHHH
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFG---TDAFQMGTKKVQDVVGTVQG-IKVRVIDTPGLLPSWSDQRQNEKILH 707 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~vft---vda~rstTre~qei~geI~G-ipVtVIDTPGL~DS~gd~~~neeIlk 707 (1266)
++.++|+++|--++||||++..|.++..-. +..|. |+. ...+| +.++|.|.-|-.. ..-+++
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn--~k~-----v~~~g~f~LnvwDiGGqr~-------IRpyWs 80 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFN--TKK-----VEYDGTFHLNVWDIGGQRG-------IRPYWS 80 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcc--eEE-----EeecCcEEEEEEecCCccc-------cchhhh
Confidence 567899999999999999999999986432 22232 222 22344 7899999888632 122332
Q ss_pred HHHHhhhcCCCCEEEEEeecCCCCC
Q 000824 708 SVKRFIKKTPPDIVLYLDRLDMQNR 732 (1266)
Q Consensus 708 eIKkfLk~~~pDVVLLVIrld~~r~ 732 (1266)
. |. ...|.++||++.+...+
T Consensus 81 N---Yy--envd~lIyVIDS~D~kr 100 (185)
T KOG0074|consen 81 N---YY--ENVDGLIYVIDSTDEKR 100 (185)
T ss_pred h---hh--hccceEEEEEeCCchHh
Confidence 2 22 25899999987554433
No 441
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=92.11 E-value=0.8 Score=44.42 Aligned_cols=96 Identities=21% Similarity=0.239 Sum_probs=49.2
Q ss_pred EEEE-ccCCCCHHHHHHHHhcC-------ccccccC-cccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHH
Q 000824 637 IMVL-GKTGVGKSATINSIFDE-------VKFGTDA-FQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILH 707 (1266)
Q Consensus 637 ILLV-GpTGVGKSTLINSLLGr-------~vftvda-~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlk 707 (1266)
|+++ ++.|+||||+.-.|+.. .+...|. ++..+ .++|||||+.... ....
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~-------------D~IIiDtpp~~~~--------~~~~ 60 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD-------------DYVVVDLGRSLDE--------VSLA 60 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC-------------CEEEEeCCCCcCH--------HHHH
Confidence 3444 57999999987766643 2222222 11111 6899999997531 1111
Q ss_pred HHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEec
Q 000824 708 SVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTH 761 (1266)
Q Consensus 708 eIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTK 761 (1266)
. + ...|.+|++...+..... .-..+++.+.+. +..-..++.+|+|+
T Consensus 61 ~----l--~~aD~vlvvv~~~~~s~~-~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 61 A----L--DQADRVFLVTQQDLPSIR-NAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred H----H--HHcCeEEEEecCChHHHH-HHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 1 1 136788888665532211 112334444332 22113467677764
No 442
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=92.10 E-value=0.12 Score=55.22 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.4
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|+.|+|||||++.|+|..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999964
No 443
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.06 E-value=1.3 Score=47.25 Aligned_cols=59 Identities=24% Similarity=0.447 Sum_probs=35.3
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEE--CCEEEEEEeCCCC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV--QGIKVRVIDTPGL 692 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI--~GipVtVIDTPGL 692 (1266)
.=+.++|+|+.|.|||-|+...... .|.-+.......+.-.....+ ..+++.|+||+|-
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~-kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQ 68 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIEN-KFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQ 68 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHh-hhcccccceeeeeecceeeeecCcEEEEEEeecccH
Confidence 3468999999999999999877653 222222111111111111122 2367899999996
No 444
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=92.06 E-value=0.27 Score=67.02 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.8
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr 657 (1266)
+-+|+|+|+||+||||+++.|++-
T Consensus 1245 GekvaIvGrSGsGKSTLl~lL~rl 1268 (1490)
T TIGR01271 1245 GQRVGLLGRTGSGKSTLLSALLRL 1268 (1490)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhh
Confidence 347899999999999999999985
No 445
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=92.04 E-value=0.12 Score=54.64 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999999963
No 446
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.04 E-value=0.12 Score=55.66 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999999953
No 447
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=92.04 E-value=0.12 Score=55.76 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.9
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
.+-.++|+|++|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999996
No 448
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=92.03 E-value=0.2 Score=54.48 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCCCCCccEEEEEccCCCCHHHHHHHHhcC
Q 000824 619 MAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 619 LaeqLe~~~~e~lk~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
|.++|..... ....+..|.|.|++|+|||||++.|++.
T Consensus 19 l~~~~~~~~~-~~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 19 LLRRLAALQA-EPQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred HHHHHHHHHh-cCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4444443322 2334679999999999999999999974
No 449
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.02 E-value=0.13 Score=55.37 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999963
No 450
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=91.99 E-value=0.12 Score=56.55 Aligned_cols=25 Identities=20% Similarity=0.326 Sum_probs=22.6
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
.+-.++|+|++|+|||||++.|+|-
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4558999999999999999999985
No 451
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.96 E-value=0.12 Score=60.76 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=22.0
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr 657 (1266)
...|+|+|+||+|||||+++|++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~ 157 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRE 157 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999974
No 452
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.95 E-value=0.11 Score=60.42 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=22.1
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr 657 (1266)
..+|+|.|+||+|||||+|+|+..
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhh
Confidence 469999999999999999999974
No 453
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=91.94 E-value=0.13 Score=54.57 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999964
No 454
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.94 E-value=0.15 Score=46.37 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=18.4
Q ss_pred EEEEEccCCCCHHHHHHHHh
Q 000824 636 TIMVLGKTGVGKSATINSIF 655 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLL 655 (1266)
..+|.|++|+||||++.+|.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999998865
No 455
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.92 E-value=0.13 Score=49.16 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=19.6
Q ss_pred EEEEccCCCCHHHHHHHHhcC
Q 000824 637 IMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 637 ILLVGpTGVGKSTLINSLLGr 657 (1266)
|+|.|.+|+||||+++.|..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999876
No 456
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=91.91 E-value=0.13 Score=55.42 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|+.|+|||||++.|+|-.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999999963
No 457
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=91.89 E-value=0.13 Score=55.65 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=23.0
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999963
No 458
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=91.87 E-value=0.13 Score=56.89 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.8
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
..+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999999964
No 459
>PRK10908 cell division protein FtsE; Provisional
Probab=91.84 E-value=0.14 Score=54.96 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=23.7
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
..+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999999963
No 460
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=91.82 E-value=0.13 Score=55.15 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.4
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45699999999999999999999963
No 461
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=91.80 E-value=0.14 Score=55.85 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=23.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999999963
No 462
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=91.80 E-value=0.18 Score=57.42 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.5
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCcc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVK 659 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~v 659 (1266)
.+-.++|+|+.|+|||||++.|+|...
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 345899999999999999999999643
No 463
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.79 E-value=0.14 Score=54.99 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|+.|+|||||++.|+|..
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 35589999999999999999999964
No 464
>PRK12377 putative replication protein; Provisional
Probab=91.78 E-value=0.35 Score=54.19 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.2
Q ss_pred cEEEEEccCCCCHHHHHHHHhcC
Q 000824 635 CTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr 657 (1266)
..++|.|++|+|||.|..+|+..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~ 124 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNR 124 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999975
No 465
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.76 E-value=0.13 Score=56.00 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999999963
No 466
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.73 E-value=0.14 Score=55.57 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999963
No 467
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=91.72 E-value=0.14 Score=55.23 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=23.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|+.|+|||||++.|+|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 45589999999999999999999953
No 468
>PRK07261 topology modulation protein; Provisional
Probab=91.70 E-value=0.14 Score=53.68 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.5
Q ss_pred cEEEEEccCCCCHHHHHHHHhcC
Q 000824 635 CTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr 657 (1266)
.+|+|+|++|+||||+...|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998754
No 469
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=91.68 E-value=0.14 Score=55.34 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.3
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|+.|+|||||++.|+|..
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999964
No 470
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=91.68 E-value=0.14 Score=55.53 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.4
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|+.|+|||||++.|+|..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999963
No 471
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.65 E-value=0.15 Score=53.83 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.3
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999999963
No 472
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.64 E-value=0.15 Score=54.04 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=23.7
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
..+-.++|+|+.|+|||||++.|+|..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345699999999999999999999963
No 473
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=91.63 E-value=1.2 Score=53.98 Aligned_cols=113 Identities=10% Similarity=0.090 Sum_probs=64.9
Q ss_pred ccEEEEEccCCCCHHHHHHHHh--cCcc-------------ccccC------cccceeEEEEEEEEECCEEEEEEeCCCC
Q 000824 634 SCTIMVLGKTGVGKSATINSIF--DEVK-------------FGTDA------FQMGTKKVQDVVGTVQGIKVRVIDTPGL 692 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLL--Gr~v-------------ftvda------~rstTre~qei~geI~GipVtVIDTPGL 692 (1266)
..+.+|+-.+-+||||+--+|+ |..+ +.++. -++...........+.+..|.+.||||-
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 3589999999999999998876 2211 11111 1111112222344567999999999998
Q ss_pred CCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCCCCCccEEEEEeccCC
Q 000824 693 LPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAAS 764 (1266)
Q Consensus 693 ~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ei~k~tIVVLTKaDe 764 (1266)
.|- .++.++.+. -+|..+.|+++. +.+ +.++++.+ +.|.. -..+++-.+||+|.
T Consensus 92 eDF------SEDTYRtLt------AvDsAvMVIDaA-KGi---E~qT~KLf-eVcrl-R~iPI~TFiNKlDR 145 (528)
T COG4108 92 EDF------SEDTYRTLT------AVDSAVMVIDAA-KGI---EPQTLKLF-EVCRL-RDIPIFTFINKLDR 145 (528)
T ss_pred ccc------chhHHHHHH------hhheeeEEEecc-cCc---cHHHHHHH-HHHhh-cCCceEEEeecccc
Confidence 663 244455443 267788887664 333 33344433 23321 13556666666664
No 474
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.61 E-value=0.15 Score=54.32 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|+.|+|||||++.|+|-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 45589999999999999999999953
No 475
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=91.60 E-value=0.15 Score=53.81 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999963
No 476
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.59 E-value=0.15 Score=54.39 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.4
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999964
No 477
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.57 E-value=0.15 Score=54.30 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.8
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
.+..|+|.|++|+|||||++.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999975
No 478
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=91.57 E-value=0.12 Score=54.99 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=21.4
Q ss_pred cEEEEEccCCCCHHHHHHHHhcC
Q 000824 635 CTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr 657 (1266)
.+|+|+|++|+||||+...|+.+
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999986
No 479
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=91.54 E-value=0.92 Score=42.85 Aligned_cols=50 Identities=28% Similarity=0.252 Sum_probs=28.5
Q ss_pred EEEEc-cCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCC
Q 000824 637 IMVLG-KTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLP 694 (1266)
Q Consensus 637 ILLVG-pTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~D 694 (1266)
|+++| +-|+||||+.-.|+..-.. ... .+...... ....++|||||+...
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~--~~~-----~vl~~d~d-~~~d~viiD~p~~~~ 52 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR--RGK-----RVLLIDLD-PQYDYIIIDTPPSLG 52 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh--CCC-----cEEEEeCC-CCCCEEEEeCcCCCC
Confidence 66777 7899999988776642110 000 01111000 015789999999853
No 480
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=91.53 E-value=0.37 Score=56.94 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCCCCCccEEEEEccCCCCHHHHHHHHhcC
Q 000824 618 AMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 618 ~LaeqLe~~~~e~lk~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
++.+.+.......-.....++|+||+|+||||+.++|+..
T Consensus 62 ~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 62 RFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4455554433211122456899999999999999999975
No 481
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=91.52 E-value=0.26 Score=55.99 Aligned_cols=105 Identities=18% Similarity=0.281 Sum_probs=66.1
Q ss_pred EEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCCCCCCccchhchHHHHHHHHHhhhc
Q 000824 636 TIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKK 715 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~ 715 (1266)
++-|+|-+.+||||++..|+|.. ..+.+|..+|-.+..-...+.|-++.+.|.||+.+.+.+....-+..-.+ .
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviav-----a 134 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAV-----A 134 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEE-----e
Confidence 89999999999999999999963 23344555555444444456788999999999998654433221111011 1
Q ss_pred CCCCEEEEEeecCCCCCCCCcHHHHHHHHHHhCC
Q 000824 716 TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGP 749 (1266)
Q Consensus 716 ~~pDVVLLVIrld~~r~d~eD~elLK~I~eiFG~ 749 (1266)
..+.++++|++.- .. ..-..+++.=.+-||-
T Consensus 135 rtcnli~~vld~~-kp--~~hk~~ie~eleg~gi 165 (358)
T KOG1487|consen 135 RTCNLIFIVLDVL-KP--LSHKKIIEKELEGFGI 165 (358)
T ss_pred ecccEEEEEeecc-Cc--ccHHHHHHHhhhccee
Confidence 2356777775442 11 2345667766677774
No 482
>PRK09183 transposase/IS protein; Provisional
Probab=91.49 E-value=0.2 Score=56.07 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=22.8
Q ss_pred CCCccEEEEEccCCCCHHHHHHHHhcC
Q 000824 631 LDFSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 631 lk~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
+...-+|+|+|++|+|||++.++|...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 444568999999999999999999653
No 483
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=91.46 E-value=0.15 Score=55.15 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.3
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999999964
No 484
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=91.45 E-value=0.16 Score=55.22 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.3
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999964
No 485
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=91.43 E-value=3.9 Score=47.59 Aligned_cols=134 Identities=15% Similarity=0.211 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHhCC-CCCCCccEEEEEccCCCCHHHHHHHHhcCccccccCcccceeEEEEEEEEECCEEEEEEeCCC
Q 000824 613 FDRASAMAEQLEAAGQ-EPLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPG 691 (1266)
Q Consensus 613 ~d~a~~LaeqLe~~~~-e~lk~slrILLVGpTGVGKSTLINSLLGr~vftvda~rstTre~qei~geI~GipVtVIDTPG 691 (1266)
+..|..+.+.|+..-. ++...-..++|+|+||.|||+++...........+. + ...+||.+|.+|.
T Consensus 39 Y~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~------~-------~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 39 YPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDE------D-------AERIPVVYVQMPP 105 (302)
T ss_pred CHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCC------C-------CccccEEEEecCC
Confidence 4566666666665432 333345689999999999999999988753222111 0 0135899999987
Q ss_pred CCC--------------CccchhchHHHHHHHHHhhhcCCCCEEEEEeecCC--CCCCCCcHHHHHHHHHHhCCCCCccE
Q 000824 692 LLP--------------SWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDM--QNRDFSDMPLLRTITDIFGPSIWFNA 755 (1266)
Q Consensus 692 L~D--------------S~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~--~r~d~eD~elLK~I~eiFG~ei~k~t 755 (1266)
-.+ .........+....+...++..++-+++ ++-+-. .........+|..|+. +|.....++
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLI-IDE~H~lLaGs~~~qr~~Ln~LK~-L~NeL~ipi 183 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLI-IDEFHNLLAGSYRKQREFLNALKF-LGNELQIPI 183 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEE-eechHHHhcccHHHHHHHHHHHHH-HhhccCCCe
Confidence 421 1111112223333334455555554433 332210 0111134455666554 466666777
Q ss_pred EEEEec
Q 000824 756 IVVLTH 761 (1266)
Q Consensus 756 IVVLTK 761 (1266)
|.|=|.
T Consensus 184 V~vGt~ 189 (302)
T PF05621_consen 184 VGVGTR 189 (302)
T ss_pred EEeccH
Confidence 766553
No 486
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=91.43 E-value=0.16 Score=54.95 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=23.4
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 45699999999999999999999963
No 487
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.42 E-value=0.16 Score=55.61 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999999963
No 488
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.41 E-value=0.47 Score=57.21 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.6
Q ss_pred EEEEEccCCCCHHHHHHHHhcC
Q 000824 636 TIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 636 rILLVGpTGVGKSTLINSLLGr 657 (1266)
--+|.||+|+||||+|.+|++.
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~ 258 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANY 258 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhh
Confidence 5789999999999999999996
No 489
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=91.39 E-value=0.63 Score=53.91 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.2
Q ss_pred cEEEEEccCCCCHHHHHHHHhcC
Q 000824 635 CTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 635 lrILLVGpTGVGKSTLINSLLGr 657 (1266)
...+|.|--|+|||||||.|+..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 36788899999999999999854
No 490
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.39 E-value=0.16 Score=55.42 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.6
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
.+-.++|+|++|+|||||++.|+|.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4558999999999999999999985
No 491
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=91.38 E-value=0.17 Score=52.90 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.2
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999963
No 492
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=91.36 E-value=0.51 Score=56.65 Aligned_cols=29 Identities=10% Similarity=0.274 Sum_probs=23.8
Q ss_pred CCCCcccccHHHHHHHhHHHHHhhhhhHH
Q 000824 916 ELPPFKRLTKAQVAKLTKAQKRAYFDELE 944 (1266)
Q Consensus 916 qlppf~~l~ksq~~kl~k~q~k~y~de~~ 944 (1266)
..++|.||++..+.++-..++.+.+.+|.
T Consensus 311 ~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~ 339 (413)
T TIGR00382 311 VIATLEKLDEEALIAILTKPKNALVKQYQ 339 (413)
T ss_pred eEeecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999988776666654
No 493
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.36 E-value=0.14 Score=59.52 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.9
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr 657 (1266)
..+|++.|+||+|||||+|+|++.
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999975
No 494
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.36 E-value=0.16 Score=55.53 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.7
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
.+-.++|+|++|+|||||++.|+|-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999995
No 495
>PTZ00099 rab6; Provisional
Probab=91.34 E-value=1.2 Score=46.90 Aligned_cols=69 Identities=12% Similarity=0.164 Sum_probs=40.6
Q ss_pred EEEEEEeCCCCCCCccchhchHHHHHHHHHhhhcCCCCEEEEEeecCCCCCCCCc-HHHHHHHHHHhCCCCCccEEEEEe
Q 000824 682 IKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSD-MPLLRTITDIFGPSIWFNAIVVLT 760 (1266)
Q Consensus 682 ipVtVIDTPGL~DS~gd~~~neeIlkeIKkfLk~~~pDVVLLVIrld~~r~d~eD-~elLK~I~eiFG~ei~k~tIVVLT 760 (1266)
+.+.|+||||.... .. ....++ ...|++|||.+++... +..+ ...+..+....+ ...+++||.|
T Consensus 29 v~l~iwDt~G~e~~-------~~---~~~~~~--~~ad~~ilv~D~t~~~-sf~~~~~w~~~i~~~~~--~~~piilVgN 93 (176)
T PTZ00099 29 VRLQLWDTAGQERF-------RS---LIPSYI--RDSAAAIVVYDITNRQ-SFENTTKWIQDILNERG--KDVIIALVGN 93 (176)
T ss_pred EEEEEEECCChHHh-------hh---ccHHHh--CCCcEEEEEEECCCHH-HHHHHHHHHHHHHHhcC--CCCeEEEEEE
Confidence 67899999997321 11 122333 3689999998876431 1111 123333333322 2467899999
Q ss_pred ccCCC
Q 000824 761 HAASA 765 (1266)
Q Consensus 761 KaDeL 765 (1266)
|+|+.
T Consensus 94 K~DL~ 98 (176)
T PTZ00099 94 KTDLG 98 (176)
T ss_pred Ccccc
Confidence 99974
No 496
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.33 E-value=0.16 Score=55.19 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.1
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999999963
No 497
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=91.33 E-value=0.16 Score=56.05 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=23.2
Q ss_pred CCccEEEEEccCCCCHHHHHHHHhcC
Q 000824 632 DFSCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 632 k~slrILLVGpTGVGKSTLINSLLGr 657 (1266)
..+-.++|+|++|+|||||++.|+|.
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34568999999999999999999996
No 498
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=91.29 E-value=0.17 Score=53.82 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=23.4
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEV 658 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~ 658 (1266)
.+-.++|+|+.|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999999964
No 499
>PRK08233 hypothetical protein; Provisional
Probab=91.28 E-value=0.18 Score=51.69 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.6
Q ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Q 000824 634 SCTIMVLGKTGVGKSATINSIFDE 657 (1266)
Q Consensus 634 slrILLVGpTGVGKSTLINSLLGr 657 (1266)
.+.|+|.|++|+||||+.+.|+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999875
No 500
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.27 E-value=0.17 Score=52.98 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=23.7
Q ss_pred CccEEEEEccCCCCHHHHHHHHhcCcc
Q 000824 633 FSCTIMVLGKTGVGKSATINSIFDEVK 659 (1266)
Q Consensus 633 ~slrILLVGpTGVGKSTLINSLLGr~v 659 (1266)
.+-.++|+|++|+|||||++.|+|...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455899999999999999999999643
Done!