Query 000825
Match_columns 1266
No_of_seqs 400 out of 2663
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 16:20:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000825.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_596-599//hhsearch_pdb/000825hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3def_A T7I23.11 protein; chlor 1.0 1 1 201.8 15.1 203 633-844 35-242 (262)
2 1h65_A Chloroplast outer envel 1.0 1 1 189.2 18.0 202 633-844 38-243 (270)
3 3gee_A MNME, tRNA modification 1.0 1 1 177.5 5.0 221 528-766 128-357 (476)
4 3geh_A MNME, tRNA modification 1.0 1 1 173.7 1.5 217 528-767 120-345 (462)
5 1xzp_A Probable tRNA modificat 1.0 1 1 156.3 4.2 216 528-766 140-364 (482)
6 3lxx_A GTPase IMAP family memb 1.0 1 1 146.1 13.8 162 628-801 23-187 (239)
7 3lxw_A GTPase IMAP family memb 1.0 1 1 141.0 13.5 160 632-802 19-182 (247)
8 2xtp_A GTPase IMAP family memb 1.0 1 1 124.8 15.4 156 631-799 19-179 (260)
9 3t5d_A Septin-7; GTP-binding p 1.0 1 1 114.9 12.6 129 632-766 6-158 (274)
10 3iev_A GTP-binding protein ERA 1.0 1 1 112.5 13.6 126 632-765 8-135 (308)
No 1
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=1.00 E-value=1 Score=201.79 Aligned_cols=203 Identities=35% Similarity=0.576 Sum_probs=167.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCHHCHHHHHHHHHHH
Q ss_conf 86089999259998789999995585332367654115999999999897999994999998865313049999999985
Q 000825 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 633 ~slrILLVGKTGVGKSSLINSLLGe~vitvDa~rsTTkevlei~geI~GipItVIDTPGL~DSagd~~~nEeIlkeIKkf 712 (1266)
..++|+++|.+|+||||++|+|++...+.++.+.++|.........+.+..++|+||||+.+.. ...+...+.+..+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~---~~~~~~~~~i~~~ 111 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG---YVNHQALELIKGF 111 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT---EECHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEECCCCCCCC---CCHHHHHHHHHHH
T ss_conf 8758999899999999999998299874237889850236999998789469999898988753---1169999999999
Q ss_pred HHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHH
Q ss_conf 61299989999960698789977099999999881999886199999445899999999987630145301499999999
Q 000825 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQQAI 792 (1266)
Q Consensus 713 Ik~~kiDvVLLVirLD~sr~d~eD~elLk~IteiFG~~i~k~iIVVLTKaDel~Pde~ne~~~syEefL~qRS~~LQqlI 792 (1266)
+....+|+++||++++..++...+...++.|...|+..+++++++|+||+|..++++ ..++.|+..+...+++.+
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~-----~~~e~~~~~~~~~l~~~i 186 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDE-----LSYETFSSKRSDSLLKTI 186 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTT-----CCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHCCEEEEEECCCCCCCCC-----CCHHHHHHHHHHHHHHHH
T ss_conf 853798989999748877899899999999999856352437899996733479877-----659999986049999999
Q ss_pred HHHHCCCCC-----CCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 998334773-----3430000366521378779822589988468899777899999
Q 000825 793 RQAAGDMRL-----MNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKIL 844 (1266)
Q Consensus 793 rq~agdlrl-----~NPVsLVEN~p~C~tNe~gekvLPngq~Wi~qLllLc~v~kIL 844 (1266)
+++.+...+ +.|+.+++|.+.|..|..++++||++++|+++|+.. .+..+.
T Consensus 187 ~~~~~~~~~~~~~~~~pv~~ve~~~~~~~n~~g~~~lp~~~~w~~~~~~~-~~~~~~ 242 (262)
T 3def_A 187 RAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKA-ITDVAT 242 (262)
T ss_dssp HHHHTCCHHHHHHHCCEEEECCCCTTCCBCTTSCBBCTTSCBSCC-CHHH-HHHHHT
T ss_pred HHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCCEEHHHHHHH-HHHHHH
T ss_conf 99727452235356688899867887788989776799998609999999-999995
No 2
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=1.00 E-value=1 Score=189.17 Aligned_cols=202 Identities=40% Similarity=0.631 Sum_probs=159.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCHHCHHHHHHHHHHH
Q ss_conf 86089999259998789999995585332367654115999999999897999994999998865313049999999985
Q 000825 633 FSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRF 712 (1266)
Q Consensus 633 ~slrILLVGKTGVGKSSLINSLLGe~vitvDa~rsTTkevlei~geI~GipItVIDTPGL~DSagd~~~nEeIlkeIKkf 712 (1266)
..++|+++|.+|+||||++|+|++.....++.+.++|...........+..+.|+||||+.+.. .....++..+..+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~---~~~~~~~~~i~~~ 114 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG---YINDMALNIIKSF 114 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETT---EECHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEECCCCCCCC---CCHHHHHHHHHHH
T ss_conf 9759999889999899999999599863226889863226899986499679999898888875---2569999999998
Q ss_pred HHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHH
Q ss_conf 61299989999960698789977099999999881999886199999445899999999987630145301499999999
Q 000825 713 IKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQQAI 792 (1266)
Q Consensus 713 Ik~~kiDvVLLVirLD~sr~d~eD~elLk~IteiFG~~i~k~iIVVLTKaDel~Pde~ne~~~syEefL~qRS~~LQqlI 792 (1266)
+....+|+++||++++..++...+...++.+...|+..+|.++++|+||+|..++++ ..++.|+.+....+++.+
T Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~-----~~~~~~~~~~~~~l~~~~ 189 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG-----LPYDEFFSKRSEALLQVV 189 (270)
T ss_dssp TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG-----CCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC-----CCHHHHHHHHHHHHHHHH
T ss_conf 633799999999848888688899999999998727002267899997866678678-----889999998799999999
Q ss_pred HHHHCCCCCC----CCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9983347733----430000366521378779822589988468899777899999
Q 000825 793 RQAAGDMRLM----NPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKIL 844 (1266)
Q Consensus 793 rq~agdlrl~----NPVsLVEN~p~C~tNe~gekvLPngq~Wi~qLllLc~v~kIL 844 (1266)
++..+....+ .|+.++++.+.|+++..+++++|.+.+|.+.|+. ++..++
T Consensus 190 ~~~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~--~l~~~~ 243 (270)
T 1h65_A 190 RSGASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQ--TITEVA 243 (270)
T ss_dssp HHHTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEECCCCCCCHHHHHH--HHHHHH
T ss_conf 985014553101039879981788430468886677899772789999--999998
No 3
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=1.00 E-value=1 Score=177.52 Aligned_cols=221 Identities=17% Similarity=0.175 Sum_probs=148.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 77787778888987778657999999067999999999999999999999389964589999999804069998640698
Q 000825 528 VVQHPRVNGAISHTQTQPIEDPGNGEAEEYDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGR 607 (1266)
Q Consensus 528 ~~q~~rlNgk~dlsqaeaVADli~s~seE~~eLreELq~LR~kLlrLv~Rlg~sPe~~~laQvLyrLgLaE~Li~~~~er 607 (1266)
=++|+++||++|++|+|+++|++.+.+ ..+.+..+++|++.|.+.+..++ .+.+..+...+..+.+..+.
T Consensus 128 Ft~RAflngk~dL~qaEav~dli~a~t--~~~~~~a~~~l~G~ls~~i~~lr--------~~L~~~~a~iea~iDf~eed 197 (476)
T 3gee_A 128 FTRRAFLNGRIDLLQAEAIGEMIHART--ESAYRTAVSQMKGDLSVRLGGLR--------EQLIRSCALIELELDFSEED 197 (476)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHCCS--HHHHHHHHHHHHTHHHHHHHHHH--------THHHHHHHTTTTCSSCCSSC
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCC--HHHHHHHHHHHCCCHHHHHHHHH--------HHHHHHHHHHHEECCCCCCC
T ss_conf 124332167672999999999885999--99999999860770779999999--------99999998764226777323
Q ss_pred CCCCCHHHH----HHHHHHHHHH----C-CCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 888646689----9999999981----7-999998608999925999878999999558533236765411599999999
Q 000825 608 VGAFSFDRA----SAMAEQLEAA----G-QEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGT 678 (1266)
Q Consensus 608 l~~fs~d~a----~~LaeqLe~~----~-~e~l~~slrILLVGKTGVGKSSLINSLLGe~vitvDa~rsTTkevlei~ge 678 (1266)
+........ ..+...+... . ...++.+++|+++|++|+||||++|+|++...+.+..+.++|++.......
T Consensus 198 i~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~ 277 (476)
T 3gee_A 198 VEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFI 277 (476)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf 56010999999999999999999999986676428988999999999799999999678973237999802778999999
Q ss_pred ECCEEEEEEECCCCCCCCCCHHCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 98979999949999988653130499999999856129998999996069878997709999999988199988619999
Q 000825 679 VQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVV 758 (1266)
Q Consensus 679 I~GipItVIDTPGL~DSagd~~~nEeIlkeIKkfIk~~kiDvVLLVirLD~sr~d~eD~elLk~IteiFG~~i~k~iIVV 758 (1266)
+.|.++.++||||+.+.. +......+ +... .....+|+++||++.+.. ...........+...+. ..++|+|
T Consensus 278 ~~g~~l~liDT~G~~~~~-~~ve~~gi-~~~~--~~~~~aD~vl~VvD~s~~-~s~~~~~~~~~~l~~l~---~~piIvV 349 (476)
T 3gee_A 278 HDKTMFRLTDTAGLREAG-EEIEHEGI-RRSR--MKMAEADLILYLLDLGTE-RLDDELTEIRELKAAHP---AAKFLTV 349 (476)
T ss_dssp ETTEEEEEEC------------------------CCCSSCSEEEEEEETTTC-SSGGGHHHHHHHHHHCT---TSEEEEE
T ss_pred ECCEEEEEEECCCCCCCH-HHHHHHHH-HHHH--HHCCCCCEEEEEEECCCC-CCHHHHHHHHHHHHHCC---CCCEEEE
T ss_conf 789189999898987630-28999999-9998--510469999999979887-52445689999999669---9987999
Q ss_pred EECCCCCC
Q ss_conf 94458999
Q 000825 759 LTHAASAP 766 (1266)
Q Consensus 759 LTKaDel~ 766 (1266)
+||+|...
T Consensus 350 ~NK~Dl~~ 357 (476)
T 3gee_A 350 ANKLDRAA 357 (476)
T ss_dssp EECTTSCT
T ss_pred EECCCCCC
T ss_conf 98957998
No 4
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=1.00 E-value=1 Score=173.67 Aligned_cols=217 Identities=19% Similarity=0.187 Sum_probs=149.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 77787778888987778657999999067999999999999999999999389964589999999804069998640698
Q 000825 528 VVQHPRVNGAISHTQTQPIEDPGNGEAEEYDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGR 607 (1266)
Q Consensus 528 ~~q~~rlNgk~dlsqaeaVADli~s~seE~~eLreELq~LR~kLlrLv~Rlg~sPe~~~laQvLyrLgLaE~Li~~~~er 607 (1266)
=++|+++||++|++|+++++|++++.+ ..+.+..+++|++.|.+.+..+. .+++..+...+..+.... .
T Consensus 120 Ft~RAflngk~dL~qaEav~dli~a~t--~~~~~~a~~~l~g~~~~~~~~~r--------~~l~~~~a~iEa~iDf~e-d 188 (462)
T 3geh_A 120 FTLRAFLNGRLDLTQAESIADLVGARS--PQAAQTALAGLQGKLAHPIRQLR--------ANCLDILAEIEARIDFEE-D 188 (462)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHCCS--HHHHHHHHHHHHTTTHHHHHHHH--------HHHHHHHHHHHHHTTSSS-S
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCC--HHHHHHHHHHHCHHHHHHHHHHH--------HHHHHHHHHHHHHCCCCC-C
T ss_conf 556677538827999999999970899--99999999985406779999999--------999999999875316666-6
Q ss_pred CCCCCH----HHHHHHHHHHHHHCC-----CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 888646----689999999998179-----99998608999925999878999999558533236765411599999999
Q 000825 608 VGAFSF----DRASAMAEQLEAAGQ-----EPLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGT 678 (1266)
Q Consensus 608 l~~fs~----d~a~~LaeqLe~~~~-----e~l~~slrILLVGKTGVGKSSLINSLLGe~vitvDa~rsTTkevlei~ge 678 (1266)
+..... ..+..+...+..... ..++.+++|+++|++|+||||++|+|++.....+..+.++|++.......
T Consensus 189 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~ 268 (462)
T 3geh_A 189 LPPLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLV 268 (462)
T ss_dssp SCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEE
T ss_conf 77042999999999999999999987653045227977999838999989999999679864236899805888899999
Q ss_pred ECCEEEEEEECCCCCCCCCCHHCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 98979999949999988653130499999999856129998999996069878997709999999988199988619999
Q 000825 679 VQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVV 758 (1266)
Q Consensus 679 I~GipItVIDTPGL~DSagd~~~nEeIlkeIKkfIk~~kiDvVLLVirLD~sr~d~eD~elLk~IteiFG~~i~k~iIVV 758 (1266)
+.|.++.++||||+.++. +......+.+. . .....+|+++||++.+. .....+..+++.+ .. +++++|
T Consensus 269 ~~g~~v~liDT~G~~~~~-~~ve~~gi~~~-~--~~~~~aD~vl~VvD~s~-~~~~~~~~i~~~l----~~---~piivV 336 (462)
T 3geh_A 269 VGGIPVQVLDTAGIRETS-DQVEKIGVERS-R--QAANTADLVLLTIDAAT-GWTTGDQEIYEQV----KH---RPLILV 336 (462)
T ss_dssp ETTEEEEECC------------------------CCCCSCSEEEEEEETTT-CSCHHHHHHHHHH----TT---SCEEEE
T ss_pred ECCEEEEEEECCCCCCCH-HHHHHHHHHHH-H--HHHHCCCEEEEEECCCC-CCCHHHHHHHHHC----CC---CCEEEE
T ss_conf 999899999787622333-68999988877-6--33301789999803677-7778999999965----68---968999
Q ss_pred EECCCCCCC
Q ss_conf 944589999
Q 000825 759 LTHAASAPP 767 (1266)
Q Consensus 759 LTKaDel~P 767 (1266)
+||+|....
T Consensus 337 ~NK~Dl~~~ 345 (462)
T 3geh_A 337 MNKIDLVEK 345 (462)
T ss_dssp EECTTSSCG
T ss_pred EECCCCCCC
T ss_conf 989777762
No 5
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=1.00 E-value=1 Score=156.29 Aligned_cols=216 Identities=18% Similarity=0.212 Sum_probs=139.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 77787778888987778657999999067999999999999999999999389964589999999804069998640698
Q 000825 528 VVQHPRVNGAISHTQTQPIEDPGNGEAEEYDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGR 607 (1266)
Q Consensus 528 ~~q~~rlNgk~dlsqaeaVADli~s~seE~~eLreELq~LR~kLlrLv~Rlg~sPe~~~laQvLyrLgLaE~Li~~~~er 607 (1266)
-++++++||++|++|+++++|++.+.+ ..+++..+++++..|.+++..++ .+++..+...+...+...+
T Consensus 140 ft~raf~nGk~Dl~qaE~i~dli~a~t--~~~~~~a~~~l~g~l~~~~~~~r--------~~l~~~~~~ie~~idf~ee- 208 (482)
T 1xzp_A 140 FTKRAFLNGKMDLTSAEAVRDLIEAKS--ETSLKLSLRNLKGGLRDFVDSLR--------RELIEVLAEIRVELDYPDE- 208 (482)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHCCS--HHHHHHHHHHHTTHHHHHHHHHH--------HHHHHHHHHHHHHHHSTTT-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCC--HHHHHHHHHHCCHHHHHHHHHHH--------HHHHHHHHHHHHCCCCCCC-
T ss_conf 577677769948789999999986363--99999999844216769999999--------9999999876513788733-
Q ss_pred CCCCCH---HHHHHHHHHHHHH----CC-CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 888646---6899999999981----79-999986089999259998789999995585332367654115999999999
Q 000825 608 VGAFSF---DRASAMAEQLEAA----GQ-EPLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTV 679 (1266)
Q Consensus 608 l~~fs~---d~a~~LaeqLe~~----~~-e~l~~slrILLVGKTGVGKSSLINSLLGe~vitvDa~rsTTkevlei~geI 679 (1266)
+..... .....+...+... .. ..++.+++|+++|++||||||++|+|++.....+..++++|++.......+
T Consensus 209 i~~~~~~i~~~~~~l~~eL~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~ 288 (482)
T 1xzp_A 209 IETNTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI 288 (482)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEC
T ss_conf 34267999999999999999998755543320489889999969985999999997789774478898146468899940
Q ss_pred CCEEEEEEECCCCC-CCCCCHHCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 89799999499999-88653130499999999856129998999996069878997709999999988199988619999
Q 000825 680 QGIKVRVIDTPGLL-PSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVV 758 (1266)
Q Consensus 680 ~GipItVIDTPGL~-DSagd~~~nEeIlkeIKkfIk~~kiDvVLLVirLD~sr~d~eD~elLk~IteiFG~~i~k~iIVV 758 (1266)
.|.++.++||||+. +.. +......+.... .++. ..|++|||++++.. ....+..+++. +. .+++|+|
T Consensus 289 ~g~~~~l~DTaG~~~~~~-~~ve~~gi~~~~-~~~~--~aD~vl~VvD~s~~-~s~~~~~il~~----l~---~~piivV 356 (482)
T 1xzp_A 289 RGILFRIVDTAGVRSETN-DLVERLGIERTL-QEIE--KADIVLFVLDASSP-LDEEDRKILER----IK---NKRYLVV 356 (482)
T ss_dssp TTEEEEEEESSCCCSSCC-TTCCCCCHHHHH-HHHH--HCSEEEEEEETTSC-CCHHHHHHHHH----HT---TSSEEEE
T ss_pred CCEEEEEEECCCCCCCCH-HHHHHHHHHHHH-HHHH--CCCEEEEEECCCCC-CCHHHHHHHHH----HC---CCCEEEE
T ss_conf 984799997998644431-367778899999-8762--20489999258888-89879999987----06---7987999
Q ss_pred EECCCCCC
Q ss_conf 94458999
Q 000825 759 LTHAASAP 766 (1266)
Q Consensus 759 LTKaDel~ 766 (1266)
+||+|...
T Consensus 357 ~NK~DL~~ 364 (482)
T 1xzp_A 357 INKVDVVE 364 (482)
T ss_dssp EEECSSCC
T ss_pred EECCCCCC
T ss_conf 98856665
No 6
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=1.00 E-value=1 Score=146.08 Aligned_cols=162 Identities=23% Similarity=0.282 Sum_probs=119.7
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCC-CCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCHHCHHHHH
Q ss_conf 99999860899992599987899999955853323676-54115999999999897999994999998865313049999
Q 000825 628 QEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAF-QMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKIL 706 (1266)
Q Consensus 628 ~e~l~~slrILLVGKTGVGKSSLINSLLGe~vitvDa~-rsTTkevlei~geI~GipItVIDTPGL~DSagd~~~nEeIl 706 (1266)
+.+....++|+|+|++|+||||++|+|++...+..... .++|..+......+.+..+.|+||||+.+.. .....+.
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~---~~~~~~~ 99 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTE---VPNAETS 99 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC--------CHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEECCCCCCCC---CCHHHHH
T ss_conf 7899996599998899998999999982998676589988530368888888679669999799855788---8879999
Q ss_pred HHHHHHHHC--CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 999985612--999899999606987899770999999998819998861999994458999999999876301453014
Q 000825 707 HSVKRFIKK--TPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQR 784 (1266)
Q Consensus 707 keIKkfIk~--~kiDvVLLVirLD~sr~d~eD~elLk~IteiFG~~i~k~iIVVLTKaDel~Pde~ne~~~syEefL~qR 784 (1266)
..+..++.. ..+|++|+|++++ +.+..+...++.+...|+...++++++|+||+|.+.. ..++.|+...
T Consensus 100 ~~~~~~~~~~~~~~~~~l~v~d~~--~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~-------~~~~~~i~~~ 170 (239)
T 3lxx_A 100 KEIIRCILLTSPGPHALLLVVPLG--RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD-------TNLHDYLREA 170 (239)
T ss_dssp HHHHHHHHHTTTCCSEEEEEEETT--CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-------------------
T ss_pred HHHHHHHHHCCCCCCEEEEEEECC--CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-------CCHHHHHHHC
T ss_conf 999999984699980999992289--9999999999999988523034609999967766886-------4599999866
Q ss_pred CHHHHHHHHHHHCCCCC
Q ss_conf 99999999998334773
Q 000825 785 SHVVQQAIRQAAGDMRL 801 (1266)
Q Consensus 785 S~~LQqlIrq~agdlrl 801 (1266)
...+++.+++|.+++..
T Consensus 171 ~~~l~~l~~~~~~~~~~ 187 (239)
T 3lxx_A 171 PEDIQDLMDIFGDRYCA 187 (239)
T ss_dssp CHHHHHHHHHHSSSEEE
T ss_pred HHHHHHHHHHCCCEEEE
T ss_conf 49999999974998999
No 7
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=1.00 E-value=1 Score=140.99 Aligned_cols=160 Identities=20% Similarity=0.310 Sum_probs=114.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCHHCHHHHHHHHH
Q ss_conf 986089999259998789999995585332367-6541159999999998979999949999988653130499999999
Q 000825 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFGTDA-FQMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 632 ~~slrILLVGKTGVGKSSLINSLLGe~vitvDa-~rsTTkevlei~geI~GipItVIDTPGL~DSagd~~~nEeIlkeIK 710 (1266)
...++|+|+|++|+||||++|+|++...+.+.. ..++|..+......+.+..+.|+||||+.+... ...+.+...+.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~--~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQV--SKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTH--HHHSTTSHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCC--CCHHHHHHHHH
T ss_conf 9950899989999819999999839987655689998066179999997895799998979777777--71889999999
Q ss_pred HHH--HCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCC-CHH
Q ss_conf 856--12999899999606987899770999999998819998861999994458999999999876301453014-999
Q 000825 711 RFI--KKTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQR-SHV 787 (1266)
Q Consensus 711 kfI--k~~kiDvVLLVirLD~sr~d~eD~elLk~IteiFG~~i~k~iIVVLTKaDel~Pde~ne~~~syEefL~qR-S~~ 787 (1266)
.++ ....+|++|+|++++ ++...+..+++.+.+.|+...+...++|+++.+.+.. ..++.|+... ...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~-------~~~~~~l~~~~~~~ 167 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLG--RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG-------GSLHDYVSNTENRA 167 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETT--BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT-------CCHHHHHHHCCCHH
T ss_pred HHHHHCCCCCCEEEEEEECC--CCCHHHHHHHHHHHHHHCHHHHCCEEEEEECHHHCCC-------CCHHHHHHHCCCHH
T ss_conf 99984277887899997679--7888999999999998481322667999983575389-------97999986146498
Q ss_pred HHHHHHHHHCCCCCC
Q ss_conf 999999983347733
Q 000825 788 VQQAIRQAAGDMRLM 802 (1266)
Q Consensus 788 LQqlIrq~agdlrl~ 802 (1266)
+++.++.|.+++..+
T Consensus 168 l~~l~~~~g~~~~~~ 182 (247)
T 3lxw_A 168 LRELVAECGGRVCAF 182 (247)
T ss_dssp HHHHHHHTTTCEEEC
T ss_pred HHHHHHHCCCEEEEE
T ss_conf 999999759849999
No 8
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=1.00 E-value=1 Score=124.80 Aligned_cols=156 Identities=22% Similarity=0.325 Sum_probs=109.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC-CCEEEEEEEEEEECCEEEEEEECCCCCCCCCCHHCHHHHHHHH
Q ss_conf 998608999925999878999999558533236765-4115999999999897999994999998865313049999999
Q 000825 631 LDFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQ-MGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSV 709 (1266)
Q Consensus 631 l~~slrILLVGKTGVGKSSLINSLLGe~vitvDa~r-sTTkevlei~geI~GipItVIDTPGL~DSagd~~~nEeIlkeI 709 (1266)
....++|+|+|++|+||||++|+|++...+.+.... ++|..+......+.+..+.|+||||+.+... ....+++.+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~---~~~~~~~~i 95 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKD---HCEALYKEV 95 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSC---CCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEECCCCCCCCC---CHHHHHHHH
T ss_conf 99954999988999988999999849987655778885005667877886898899998919999877---779999999
Q ss_pred HHHHH--CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEE-CCCCCCCCCCCCCCCCHHHHHHC-CC
Q ss_conf 98561--2999899999606987899770999999998819998861999994-45899999999987630145301-49
Q 000825 710 KRFIK--KTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLT-HAASAPPDGPNGTASSYDMFVTQ-RS 785 (1266)
Q Consensus 710 KkfIk--~~kiDvVLLVirLD~sr~d~eD~elLk~IteiFG~~i~k~iIVVLT-KaDel~Pde~ne~~~syEefL~q-RS 785 (1266)
..++. ...+|+++||++++ ++...+..+++.+...|+.....+.|+|+| |+|... ..+..++.. ..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~--------~~~~~~i~~~~~ 165 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLG--RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG--------GSLMDYMHDSDN 165 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETT--CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT--------CCHHHHHHHCCC
T ss_pred HHHHHHCCCCCCEEEEEEECC--CCCHHHHHHHHHHHHHHCCHHHCCEEEEEECCCCCCC--------CCHHHHHHHCCH
T ss_conf 999985599985899997188--7898999999999998281102347999984643687--------559999982044
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 99999999983347
Q 000825 786 HVVQQAIRQAAGDM 799 (1266)
Q Consensus 786 ~~LQqlIrq~agdl 799 (1266)
..+++.+..|..++
T Consensus 166 ~~~~~~~~~~~~~~ 179 (260)
T 2xtp_A 166 KALSKLVAACGGRI 179 (260)
T ss_dssp HHHHHHHHHTTTCE
T ss_pred HHHHHHHHHHCCEE
T ss_conf 99999999959968
No 9
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=1.00 E-value=1 Score=114.91 Aligned_cols=129 Identities=19% Similarity=0.335 Sum_probs=82.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC-------CCCCEEEEEEEEEEECC--EEEEEEECCCCCCCCCCHHCH
Q ss_conf 986089999259998789999995585332367-------65411599999999989--799999499999886531304
Q 000825 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFGTDA-------FQMGTKKVQDVVGTVQG--IKVRVIDTPGLLPSWSDQRQN 702 (1266)
Q Consensus 632 ~~slrILLVGKTGVGKSSLINSLLGe~vitvDa-------~rsTTkevlei~geI~G--ipItVIDTPGL~DSagd~~~n 702 (1266)
.+.++|+|+|.+|+||||++|+|++...+..+. .+..+.+.........| .+++|+||||+.+.......-
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEECCCCCCCCCCHHHH
T ss_conf 54799999879999799999888677766567788444668844788889998148828999999788865543505648
Q ss_pred HHHH----HHHHHHHH-----------CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
Q ss_conf 9999----99998561-----------2999899999606987899770999999998819998861999994458999
Q 000825 703 EKIL----HSVKRFIK-----------KTPPDIVLYLDRLDMQNRDFSDMPLLRTITDIFGPSIWFNAIVVLTHAASAP 766 (1266)
Q Consensus 703 EeIl----keIKkfIk-----------~~kiDvVLLVirLD~sr~d~eD~elLk~IteiFG~~i~k~iIVVLTKaDel~ 766 (1266)
..+. .....++. ..++|+++|++..........+..+++.+.. ..++|+|+||+|.+.
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT 158 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHC------CCCEEEEEECCCCCC
T ss_conf 9999999999999987640223233467743589999658888888779999999865------688899985368789
No 10
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=1.00 E-value=1 Score=112.52 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=92.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEC-CEEEEEEECCCCCCCCCCHHCHHHHHHHHH
Q ss_conf 9860899992599987899999955853323676541159999999998-979999949999988653130499999999
Q 000825 632 DFSCTIMVLGKTGVGKSATINSIFDEVKFGTDAFQMGTKKVQDVVGTVQ-GIKVRVIDTPGLLPSWSDQRQNEKILHSVK 710 (1266)
Q Consensus 632 ~~slrILLVGKTGVGKSSLINSLLGe~vitvDa~rsTTkevlei~geI~-GipItVIDTPGL~DSagd~~~nEeIlkeIK 710 (1266)
.....|+++|++|||||||+|+|++.....++....+|+.......... +..+.|+||||+.+........+.+.....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99978999999999699999999689854568999830667899993389981999989299864432068899999999
Q ss_pred HHHHCCCCCEEEEEEECCCCCCCCCCHHH-HHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 85612999899999606987899770999-99999881999886199999445899
Q 000825 711 RFIKKTPPDIVLYLDRLDMQNRDFSDMPL-LRTITDIFGPSIWFNAIVVLTHAASA 765 (1266)
Q Consensus 711 kfIk~~kiDvVLLVirLD~sr~d~eD~el-Lk~IteiFG~~i~k~iIVVLTKaDel 765 (1266)
.++. .+|+++||++++.. ....+... ++.+.. ...++++|+||+|..
T Consensus 88 ~~l~--~aD~il~VvD~~~~-~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 88 QSLE--EADVILFMIDATEG-WRPRDEEIYQNFIKP-----LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHHH--HCSEEEEEEETTTB-SCHHHHHHHHHHTGG-----GCCCEEEEEECGGGS
T ss_pred HHHH--CCCEEEEEEECCCC-CCCHHHHHHHHHHHH-----CCCCEEEEEECCCCC
T ss_conf 8761--29899999968878-980238999999875-----599889999790078
Done!