BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000827
(1265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FHO|A Chain A, Nmr Solution Structure Of The Human Spliceosomal Protein
Complex P14-Sf3b155
Length = 47
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 39/47 (82%), Gaps = 1/47 (2%)
Query: 338 TPEQYNLMRWEKDIEERNRPLTDEELDAMFPQEGYKILDPPPSYVPI 384
TPEQ RWE++I+ERNRPL+DEELDAMFP EGYK+L PP YVPI
Sbjct: 2 TPEQLQAWRWEREIDERNRPLSDEELDAMFP-EGYKVLPPPAGYVPI 47
>pdb|3LQV|P Chain P, Branch Recognition By Sf3b14
pdb|3LQV|Q Chain Q, Branch Recognition By Sf3b14
Length = 39
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 35/40 (87%), Gaps = 1/40 (2%)
Query: 336 ALTPEQYNLMRWEKDIEERNRPLTDEELDAMFPQEGYKIL 375
++TPEQ RWE++I+ERNRPL+DEELDAMFP EGYK+L
Sbjct: 1 SMTPEQLQAWRWEREIDERNRPLSDEELDAMFP-EGYKVL 39
>pdb|2F9D|P Chain P, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
pdb|2F9D|Q Chain Q, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
Length = 43
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
Query: 336 ALTPEQYNLMRWEKDIEERNRPLTDEELDAMFPQEGYKIL 375
+ TPEQ RWE++I+ERNRPL+DEELDA FP EGYK+L
Sbjct: 5 SXTPEQLQAWRWEREIDERNRPLSDEELDAXFP-EGYKVL 43
>pdb|2F9J|P Chain P, 3.0 Angstrom Resolution Structure Of A Y22m Mutant Of The
Spliceosomal Protein P14 Bound To A Region Of Sf3b155
pdb|2F9J|Q Chain Q, 3.0 Angstrom Resolution Structure Of A Y22m Mutant Of The
Spliceosomal Protein P14 Bound To A Region Of Sf3b155
Length = 36
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 31/36 (86%), Gaps = 1/36 (2%)
Query: 340 EQYNLMRWEKDIEERNRPLTDEELDAMFPQEGYKIL 375
EQ RWE++I+ERNRPL+DEELDAMFP EGYK+L
Sbjct: 2 EQLQAWRWEREIDERNRPLSDEELDAMFP-EGYKVL 36
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To
Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To
Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/429 (21%), Positives = 184/429 (42%), Gaps = 65/429 (15%)
Query: 761 VEADYIRSDILPEFFRNFWVRRMALDRRNYKQL--VETTVEIANKVGVADIVGRIVEDLK 818
+E D ++S+I+P F +A D ++ +L VE V IA + D+ ++ L+
Sbjct: 196 LELDNVKSEIIPMF------SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 249
Query: 819 ----DESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNG 874
D+S R MV + ++ +G E+ ++ AFQ N+M +
Sbjct: 250 QAAEDKSWRVRYMVADKFTELQKAVGP--------EITKTDLVPAFQ-------NLMKDC 294
Query: 875 FGAVVNSLGQRVKPY-------------LPQICGTIKWRLNNKSAKVRQQAADLISRIAV 921
V + +VK + + QI IK +++ + V+ A +I ++
Sbjct: 295 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 354
Query: 922 VMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRL 981
++ + + + HL + L +E PEV +I+ L + VIG+ +++ + LLP +
Sbjct: 355 ILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS---QSLLPAI 408
Query: 982 TPILKNRHEKVQENCIDLVGRIADR-GAEFVPAREWMRICFELLEMLKAHKKGIRRATVN 1040
+ ++ +V+ I+ + +A + G EF + +C + L H IR A +
Sbjct: 409 VELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEK-LNSLC---MAWLVDHVYAIREAATS 464
Query: 1041 TFGYIAKAIGPQDVLATLLNNLKVQERQ----NRVCTTVAIAIVAETC----SPFTVLPA 1092
+ + G + AT++ + +R+ T I +++E C + +LP
Sbjct: 465 NLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPT 524
Query: 1093 LMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYA--VTPLLEDALMDRDLVHRQTAA 1150
++ P NV+ V KSL + IG + + V P+LE D+D+ + A
Sbjct: 525 VLRMAGDPVANVRFNVAKSL----QKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQ 580
Query: 1151 SAVKHMALG 1159
A+ ++L
Sbjct: 581 EALTVLSLA 589
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/429 (21%), Positives = 184/429 (42%), Gaps = 65/429 (15%)
Query: 761 VEADYIRSDILPEFFRNFWVRRMALDRRNYKQL--VETTVEIANKVGVADIVGRIVEDLK 818
+E D ++S+I+P F +A D ++ +L VE V IA + D+ ++ L+
Sbjct: 195 LELDNVKSEIIPMF------SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 248
Query: 819 ----DESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNG 874
D+S R MV + ++ +G E+ ++ AFQ N+M +
Sbjct: 249 QAAEDKSWRVRYMVADKFTELQKAVGP--------EITKTDLVPAFQ-------NLMKDC 293
Query: 875 FGAVVNSLGQRVKPY-------------LPQICGTIKWRLNNKSAKVRQQAADLISRIAV 921
V + +VK + + QI IK +++ + V+ A +I ++
Sbjct: 294 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 353
Query: 922 VMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRL 981
++ + + + HL + L +E PEV +I+ L + VIG+ +++ + LLP +
Sbjct: 354 ILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS---QSLLPAI 407
Query: 982 TPILKNRHEKVQENCIDLVGRIADR-GAEFVPAREWMRICFELLEMLKAHKKGIRRATVN 1040
+ ++ +V+ I+ + +A + G EF + +C + L H IR A +
Sbjct: 408 VELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEK-LNSLC---MAWLVDHVYAIREAATS 463
Query: 1041 TFGYIAKAIGPQDVLATLLNNLKVQERQ----NRVCTTVAIAIVAETC----SPFTVLPA 1092
+ + G + AT++ + +R+ T I +++E C + +LP
Sbjct: 464 NLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPT 523
Query: 1093 LMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYA--VTPLLEDALMDRDLVHRQTAA 1150
++ P NV+ V KSL + IG + + V P+LE D+D+ + A
Sbjct: 524 VLRMAGDPVANVRFNVAKSL----QKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQ 579
Query: 1151 SAVKHMALG 1159
A+ ++L
Sbjct: 580 EALTVLSLA 588
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/429 (21%), Positives = 184/429 (42%), Gaps = 65/429 (15%)
Query: 761 VEADYIRSDILPEFFRNFWVRRMALDRRNYKQL--VETTVEIANKVGVADIVGRIVEDLK 818
+E D ++S+I+P F +A D ++ +L VE V IA + D+ ++ L+
Sbjct: 195 LELDNVKSEIIPMF------SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 248
Query: 819 ----DESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNG 874
D+S R MV + ++ +G E+ ++ AFQ N+M +
Sbjct: 249 QAAEDKSWRVRYMVADKFTELQKAVGP--------EITKTDLVPAFQ-------NLMKDC 293
Query: 875 FGAVVNSLGQRVKPY-------------LPQICGTIKWRLNNKSAKVRQQAADLISRIAV 921
V + +VK + + QI IK +++ + V+ A +I ++
Sbjct: 294 EAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSP 353
Query: 922 VMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRL 981
++ + + + HL + L +E PEV +I+ L + VIG+ +++ + LLP +
Sbjct: 354 ILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS---QSLLPAI 407
Query: 982 TPILKNRHEKVQENCIDLVGRIADR-GAEFVPAREWMRICFELLEMLKAHKKGIRRATVN 1040
+ ++ +V+ I+ + +A + G EF + +C + L H IR A +
Sbjct: 408 VELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEK-LNSLC---MAWLVDHVYAIREAATS 463
Query: 1041 TFGYIAKAIGPQDVLATLLNNLKVQERQ----NRVCTTVAIAIVAETC----SPFTVLPA 1092
+ + G + AT++ + +R+ T I +++E C + +LP
Sbjct: 464 NLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPT 523
Query: 1093 LMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYA--VTPLLEDALMDRDLVHRQTAA 1150
++ P NV+ V KSL + IG + + V P+LE D+D+ + A
Sbjct: 524 VLRMAGDPVANVRFNVAKSL----QKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQ 579
Query: 1151 SAVKHMALG 1159
A+ ++L
Sbjct: 580 EALTVLSLA 588
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small T
Antigen Complexed With The Protein Phosphatase 2a Aalpha
Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small T
Antigen Complexed With The Protein Phosphatase 2a Aalpha
Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small T
Antigen Complexed With The Protein Phosphatase 2a Aalpha
Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small T
Antigen Complexed With The Protein Phosphatase 2a Aalpha
Subunit
Length = 589
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/429 (21%), Positives = 184/429 (42%), Gaps = 65/429 (15%)
Query: 761 VEADYIRSDILPEFFRNFWVRRMALDRRNYKQL--VETTVEIANKVGVADIVGRIVEDLK 818
+E D ++S+I+P F +A D ++ +L VE V IA + D+ ++ L+
Sbjct: 196 LELDNVKSEIIPMF------SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 249
Query: 819 ----DESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNG 874
D+S R MV + ++ +G E+ ++ AFQ N+M +
Sbjct: 250 QAAEDKSWRVRYMVADKFTELQKAVGP--------EITKTDLVPAFQ-------NLMKDC 294
Query: 875 FGAVVNSLGQRVKPY-------------LPQICGTIKWRLNNKSAKVRQQAADLISRIAV 921
V + +VK + + QI IK +++ + V+ A +I ++
Sbjct: 295 EAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSP 354
Query: 922 VMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRL 981
++ + + + HL + L +E PEV +I+ L + VIG+ +++ + LLP +
Sbjct: 355 ILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS---QSLLPAI 408
Query: 982 TPILKNRHEKVQENCIDLVGRIADR-GAEFVPAREWMRICFELLEMLKAHKKGIRRATVN 1040
+ ++ +V+ I+ + +A + G EF + +C + L H IR A +
Sbjct: 409 VELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEK-LNSLC---MAWLVDHVYAIREAATS 464
Query: 1041 TFGYIAKAIGPQDVLATLLNNLKVQERQ----NRVCTTVAIAIVAETC----SPFTVLPA 1092
+ + G + AT++ + +R+ T I +++E C + +LP
Sbjct: 465 NLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPT 524
Query: 1093 LMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYA--VTPLLEDALMDRDLVHRQTAA 1150
++ P NV+ V KSL + IG + + V P+LE D+D+ + A
Sbjct: 525 VLRMAGDPVANVRFNVAKSL----QKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQ 580
Query: 1151 SAVKHMALG 1159
A+ ++L
Sbjct: 581 EALTVLSLA 589
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 93/429 (21%), Positives = 184/429 (42%), Gaps = 65/429 (15%)
Query: 761 VEADYIRSDILPEFFRNFWVRRMALDRRNYKQL--VETTVEIANKVGVADIVGRIVEDLK 818
+E D ++S+I+P F +A D ++ +L VE V IA + D+ ++ L+
Sbjct: 187 LELDNVKSEIIPMF------SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 240
Query: 819 ----DESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNG 874
D+S R MV + ++ +G E+ ++ AFQ N+M +
Sbjct: 241 QAAEDKSWRVRYMVADKFTELQKAVGP--------EITKTDLVPAFQ-------NLMKDC 285
Query: 875 FGAVVNSLGQRVKPY-------------LPQICGTIKWRLNNKSAKVRQQAADLISRIAV 921
V + +VK + + QI IK +++ + V+ A +I ++
Sbjct: 286 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 345
Query: 922 VMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRL 981
++ + + + HL + L +E PEV +I+ L + VIG+ +++ + LLP +
Sbjct: 346 ILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS---QSLLPAI 399
Query: 982 TPILKNRHEKVQENCIDLVGRIADR-GAEFVPAREWMRICFELLEMLKAHKKGIRRATVN 1040
+ ++ +V+ I+ + +A + G EF + +C + L H IR A +
Sbjct: 400 VELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEK-LNSLC---MAWLVDHVYAIREAATS 455
Query: 1041 TFGYIAKAIGPQDVLATLLNNLKVQERQ----NRVCTTVAIAIVAETC----SPFTVLPA 1092
+ + G + AT++ + +R+ T I +++E C + +LP
Sbjct: 456 NLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPT 515
Query: 1093 LMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYA--VTPLLEDALMDRDLVHRQTAA 1150
++ P NV+ V KSL + IG + + V P+LE D+D+ + A
Sbjct: 516 VLRMAGDPVANVRFNVAKSL----QKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQ 571
Query: 1151 SAVKHMALG 1159
A+ ++L
Sbjct: 572 EALTVLSLA 580
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 93/429 (21%), Positives = 184/429 (42%), Gaps = 65/429 (15%)
Query: 761 VEADYIRSDILPEFFRNFWVRRMALDRRNYKQL--VETTVEIANKVGVADIVGRIVEDLK 818
+E D ++S+I+P F +A D ++ +L VE V IA + D+ ++ L+
Sbjct: 189 LELDNVKSEIIPMF------SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 242
Query: 819 ----DESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNG 874
D+S R MV + ++ +G E+ ++ AFQ N+M +
Sbjct: 243 QAAEDKSWRVRYMVADKFTELQKAVGP--------EITKTDLVPAFQ-------NLMKDC 287
Query: 875 FGAVVNSLGQRVKPY-------------LPQICGTIKWRLNNKSAKVRQQAADLISRIAV 921
V + +VK + + QI IK +++ + V+ A +I ++
Sbjct: 288 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 347
Query: 922 VMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRL 981
++ + + + HL + L +E PEV +I+ L + VIG+ +++ + LLP +
Sbjct: 348 ILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS---QSLLPAI 401
Query: 982 TPILKNRHEKVQENCIDLVGRIADR-GAEFVPAREWMRICFELLEMLKAHKKGIRRATVN 1040
+ ++ +V+ I+ + +A + G EF + +C + L H IR A +
Sbjct: 402 VELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEK-LNSLC---MAWLVDHVYAIREAATS 457
Query: 1041 TFGYIAKAIGPQDVLATLLNNLKVQERQ----NRVCTTVAIAIVAETC----SPFTVLPA 1092
+ + G + AT++ + +R+ T I +++E C + +LP
Sbjct: 458 NLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPT 517
Query: 1093 LMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYA--VTPLLEDALMDRDLVHRQTAA 1150
++ P NV+ V KSL + IG + + V P+LE D+D+ + A
Sbjct: 518 VLRMAGDPVANVRFNVAKSL----QKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQ 573
Query: 1151 SAVKHMALG 1159
A+ ++L
Sbjct: 574 EALTVLSLA 582
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 93/422 (22%), Positives = 174/422 (41%), Gaps = 51/422 (12%)
Query: 761 VEADYIRSDILPEFFRNFWVRRMALDRRNYKQL--VETTVEIANKVGVADIVGRIVEDLK 818
+E D ++S+I+P F +A D ++ +L VE V IA + D+ + L+
Sbjct: 189 LELDNVKSEIIPXF------SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPTLR 242
Query: 819 ----DESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSD-DANVMLN 873
D+S R V + ++ +G E+ ++ AFQ D +A V
Sbjct: 243 QAAEDKSWRVRYXVADKFTELQKAVGP--------EITKTDLVPAFQNLXKDCEAEVRAA 294
Query: 874 GFGAVVN-----SLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHE 928
V S R QI IK +++ + V+ A +I ++ ++ +
Sbjct: 295 ASHKVKEFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGK--- 351
Query: 929 EQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNR 988
+ + HL + L +E PEV +I+ L + VIG+ +++ + LLP + + ++
Sbjct: 352 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS---QSLLPAIVELAEDA 408
Query: 989 HEKVQENCIDLVGRIADR-GAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAK 1047
+V+ I+ +A + G EF + +C L H IR A + + +
Sbjct: 409 KWRVRLAIIEYXPLLAGQLGVEFFDEK-LNSLC---XAWLVDHVYAIREAATSNLKKLVE 464
Query: 1048 AIGPQDVLATLLNNLKVQERQ----NRVCTTVAIAIVAETC----SPFTVLPALMNEYRV 1099
G + AT++ + +R T I +++E C + LP ++
Sbjct: 465 KFGKEWAHATIIPKVLAXSGDPNYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGD 524
Query: 1100 PELNVQNGVLKSLSFLFEYIGEMGKDYIYA--VTPLLEDALMDRDLVHRQTAASAVKHMA 1157
P NV+ V KSL + IG + + V P+LE D+D+ + A A+ ++
Sbjct: 525 PVANVRFNVAKSL----QKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 580
Query: 1158 LG 1159
L
Sbjct: 581 LA 582
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 578 DNIDEY-VRNTTARAFSVVASALG---IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAI 633
D I ++ +R +A A V+A+ +P +LP LK + W + +GI ++ IA
Sbjct: 343 DTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELL-FHHEWVVKESGILVLGAIA- 400
Query: 634 LIGC--AVLPHLRSLVEIIEHGLNDENQKVRTIT 665
GC ++P+L L+ + L+D+ VR+IT
Sbjct: 401 -EGCMQGMIPYLPELIPHLIQCLSDKKALVRSIT 433
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 578 DNIDEY-VRNTTARAFSVVASALG---IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAI 633
D I ++ +R +A A V+A+ +P +LP LK + W + +GI ++ IA
Sbjct: 330 DTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELL-FHHEWVVKESGILVLGAIA- 387
Query: 634 LIGC--AVLPHLRSLVEIIEHGLNDENQKVRTIT 665
GC ++P+L L+ + L+D+ VR+IT
Sbjct: 388 -EGCMQGMIPYLPELIPHLIQCLSDKKALVRSIT 420
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 581 DEYVRNTTARAFSVVASALG---IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGC 637
D +R +A A V+A+ +P +LP LK + W + +GI ++ IA GC
Sbjct: 372 DWNLRKCSAAALDVLANVYRDELLPHILPLLKELL-FHHEWVVKESGILVLGAIA--EGC 428
Query: 638 --AVLPHLRSLVEIIEHGLNDENQKVRTIT 665
++P+L L+ + L+D+ VR+IT
Sbjct: 429 MQGMIPYLPELIPHLIQCLSDKKALVRSIT 458
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 581 DEYVRNTTARAFSVVASALG---IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGC 637
D +R +A A V+A+ +P +LP LK + W + +GI ++ IA
Sbjct: 372 DWNLRKCSAAALDVLANVYRDELLPHILPLLKELL-FHHEWVVKESGILVLGAIAEGCXQ 430
Query: 638 AVLPHLRSLVEIIEHGLNDENQKVRTIT 665
+P+L L+ + L+D+ VR+IT
Sbjct: 431 GXIPYLPELIPHLIQCLSDKKALVRSIT 458
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,373,470
Number of Sequences: 62578
Number of extensions: 1271758
Number of successful extensions: 2798
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2778
Number of HSP's gapped (non-prelim): 33
length of query: 1265
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1155
effective length of database: 8,089,757
effective search space: 9343669335
effective search space used: 9343669335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)