Query 000827
Match_columns 1265
No_of_seqs 554 out of 2191
Neff 8.1
Searched_HMMs 46136
Date Tue Apr 2 00:11:04 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0213 Splicing factor 3b, su 100.0 2E-241 5E-246 2021.1 97.8 1144 23-1265 25-1172(1172)
2 COG5181 HSH155 U2 snRNP splice 100.0 1E-163 2E-168 1365.0 63.5 840 423-1265 136-975 (975)
3 KOG0213 Splicing factor 3b, su 100.0 1.1E-89 2.3E-94 782.0 42.8 832 232-1210 210-1152(1172)
4 COG5181 HSH155 U2 snRNP splice 100.0 1.1E-58 2.5E-63 520.2 22.4 704 378-1211 161-958 (975)
5 KOG2171 Karyopherin (importin) 100.0 5.6E-36 1.2E-40 365.3 66.7 734 456-1256 5-991 (1075)
6 KOG2171 Karyopherin (importin) 100.0 1.1E-32 2.5E-37 336.5 62.1 668 428-1137 193-979 (1075)
7 KOG2023 Nuclear transport rece 100.0 3E-33 6.6E-38 319.5 47.2 644 449-1161 7-735 (885)
8 KOG1824 TATA-binding protein-i 100.0 3.5E-30 7.5E-35 303.7 58.3 656 423-1119 10-763 (1233)
9 KOG2023 Nuclear transport rece 100.0 2.1E-29 4.5E-34 288.2 47.1 558 453-1046 172-816 (885)
10 KOG1241 Karyopherin (importin) 100.0 1.4E-28 3.1E-33 286.6 54.3 707 457-1248 3-781 (859)
11 PF08920 SF3b1: Splicing facto 100.0 4.8E-31 1E-35 257.8 3.3 112 283-414 30-143 (144)
12 COG5215 KAP95 Karyopherin (imp 99.9 5E-19 1.1E-23 200.3 56.1 694 464-1242 14-766 (858)
13 KOG1241 Karyopherin (importin) 99.9 2.3E-19 5E-24 210.3 54.7 573 465-1046 183-854 (859)
14 KOG1824 TATA-binding protein-i 99.9 2.8E-17 6E-22 195.6 62.9 774 449-1245 79-971 (1233)
15 KOG0211 Protein phosphatase 2A 99.8 1.8E-17 3.9E-22 203.8 39.5 564 456-1158 83-664 (759)
16 COG5215 KAP95 Karyopherin (imp 99.8 5.9E-15 1.3E-19 167.7 52.8 553 464-1051 186-813 (858)
17 PLN03200 cellulose synthase-in 99.8 2.4E-14 5.1E-19 190.0 60.9 681 449-1161 7-767 (2102)
18 PLN03200 cellulose synthase-in 99.8 1.1E-13 2.5E-18 183.6 58.0 710 460-1200 63-860 (2102)
19 PF08920 SF3b1: Splicing facto 99.7 3.8E-19 8.3E-24 174.5 -1.9 94 233-344 30-140 (144)
20 KOG1242 Protein containing ada 99.7 1.1E-13 2.3E-18 162.5 41.2 493 641-1156 51-562 (569)
21 KOG1242 Protein containing ada 99.7 6.3E-13 1.4E-17 156.1 40.1 468 505-1035 69-552 (569)
22 KOG0211 Protein phosphatase 2A 99.7 2.3E-13 5.1E-18 167.9 37.6 539 443-1081 105-663 (759)
23 KOG0915 Uncharacterized conser 99.6 7.4E-12 1.6E-16 157.0 48.5 555 527-1200 855-1473(1702)
24 PF01602 Adaptin_N: Adaptin N 99.6 2.8E-11 6E-16 151.2 45.4 507 453-1003 5-522 (526)
25 KOG0212 Uncharacterized conser 99.6 5E-12 1.1E-16 144.9 34.5 407 603-1058 42-455 (675)
26 KOG0915 Uncharacterized conser 99.6 2.5E-10 5.4E-15 143.7 50.1 373 854-1232 955-1382(1702)
27 PTZ00429 beta-adaptin; Provisi 99.5 1.3E-09 2.8E-14 136.8 52.9 496 458-1001 35-542 (746)
28 PF01602 Adaptin_N: Adaptin N 99.4 7.4E-10 1.6E-14 138.4 42.8 472 534-1046 43-523 (526)
29 PRK09687 putative lyase; Provi 99.3 1.7E-10 3.8E-15 130.1 23.6 250 856-1154 28-278 (280)
30 PRK09687 putative lyase; Provi 99.3 6.1E-10 1.3E-14 125.8 25.5 254 894-1197 25-279 (280)
31 KOG0212 Uncharacterized conser 99.3 1.2E-08 2.5E-13 117.8 34.8 383 522-962 73-479 (675)
32 KOG0166 Karyopherin (importin) 99.3 2.1E-09 4.7E-14 126.2 28.6 295 868-1202 127-438 (514)
33 PRK13800 putative oxidoreducta 99.3 6.8E-10 1.5E-14 145.6 27.1 275 809-1155 622-896 (897)
34 KOG1943 Beta-tubulin folding c 99.3 8.7E-06 1.9E-10 101.3 60.0 568 464-1048 185-882 (1133)
35 PTZ00429 beta-adaptin; Provisi 99.2 1.2E-06 2.6E-11 110.5 51.9 493 574-1194 38-540 (746)
36 PRK13800 putative oxidoreducta 99.2 1.8E-09 3.8E-14 141.7 26.9 275 893-1232 622-896 (897)
37 KOG1248 Uncharacterized conser 99.2 5.1E-05 1.1E-09 95.8 61.9 354 856-1246 523-910 (1176)
38 KOG1943 Beta-tubulin folding c 99.2 4.3E-06 9.3E-11 103.9 51.1 620 525-1232 64-744 (1133)
39 KOG0166 Karyopherin (importin) 99.1 2.8E-08 6E-13 117.0 28.1 336 810-1154 111-482 (514)
40 KOG1248 Uncharacterized conser 99.0 5.9E-06 1.3E-10 103.9 45.9 235 819-1054 665-905 (1176)
41 PF10508 Proteasom_PSMB: Prote 99.0 1.4E-07 3.1E-12 115.9 29.0 327 869-1234 56-419 (503)
42 KOG1060 Vesicle coat complex A 98.9 1.8E-06 3.9E-11 103.4 34.5 444 471-958 51-528 (968)
43 KOG1991 Nuclear transport rece 98.9 0.00075 1.6E-08 84.1 55.6 316 869-1193 436-793 (1010)
44 KOG2274 Predicted importin 9 [ 98.8 0.0013 2.7E-08 81.2 59.2 563 454-1066 3-626 (1005)
45 KOG0891 DNA-dependent protein 98.7 0.00076 1.6E-08 93.2 52.1 695 464-1206 102-926 (2341)
46 KOG1060 Vesicle coat complex A 98.7 5.3E-05 1.2E-09 91.3 35.9 433 581-1072 49-523 (968)
47 PF10508 Proteasom_PSMB: Prote 98.6 8.5E-05 1.8E-09 91.6 36.9 365 727-1157 76-461 (503)
48 COG5064 SRP1 Karyopherin (impo 98.6 3.6E-06 7.7E-11 92.0 21.2 369 865-1247 82-507 (526)
49 KOG1020 Sister chromatid cohes 98.6 0.0078 1.7E-07 78.1 61.2 541 639-1231 810-1401(1692)
50 KOG1240 Protein kinase contain 98.6 2.9E-06 6.4E-11 105.8 21.3 130 868-1006 595-726 (1431)
51 KOG1059 Vesicle coat complex A 98.6 0.0001 2.2E-09 88.1 33.0 203 462-675 116-329 (877)
52 PF12348 CLASP_N: CLASP N term 98.6 1.2E-06 2.5E-11 97.0 15.8 186 491-677 4-209 (228)
53 KOG1240 Protein kinase contain 98.5 5E-06 1.1E-10 103.8 21.1 262 893-1158 423-725 (1431)
54 KOG1020 Sister chromatid cohes 98.5 0.012 2.7E-07 76.4 50.9 147 601-758 814-961 (1692)
55 PF12348 CLASP_N: CLASP N term 98.5 7.2E-06 1.6E-10 90.6 20.0 183 818-1006 17-207 (228)
56 PF12755 Vac14_Fab1_bd: Vacuol 98.5 4.2E-07 9.1E-12 85.1 8.4 83 620-702 2-84 (97)
57 KOG1992 Nuclear export recepto 98.5 0.0013 2.8E-08 80.3 39.2 450 509-1010 264-799 (960)
58 KOG1061 Vesicle coat complex A 98.5 0.00012 2.5E-09 89.3 30.4 490 463-1000 21-523 (734)
59 PF12460 MMS19_C: RNAPII trans 98.4 0.00036 7.9E-09 84.2 34.0 301 869-1181 61-412 (415)
60 KOG1062 Vesicle coat complex A 98.4 0.00044 9.6E-09 84.2 33.6 381 571-1047 110-495 (866)
61 PF12460 MMS19_C: RNAPII trans 98.4 0.00034 7.3E-09 84.5 33.0 186 819-1010 201-399 (415)
62 PF12755 Vac14_Fab1_bd: Vacuol 98.3 4.8E-06 1E-10 78.0 11.1 86 868-954 3-88 (97)
63 KOG1062 Vesicle coat complex A 98.3 0.0019 4.2E-08 78.8 34.4 434 536-1000 110-576 (866)
64 KOG1059 Vesicle coat complex A 98.2 0.0049 1.1E-07 74.4 36.1 87 603-698 144-230 (877)
65 COG5096 Vesicle coat complex, 98.2 0.012 2.5E-07 73.8 40.4 203 464-677 28-237 (757)
66 KOG2062 26S proteasome regulat 98.2 0.0071 1.5E-07 73.2 36.5 227 946-1204 426-657 (929)
67 KOG4224 Armadillo repeat prote 98.1 0.00072 1.6E-08 75.1 24.4 114 893-1008 377-496 (550)
68 COG5064 SRP1 Karyopherin (impo 98.1 2.6E-05 5.6E-10 85.4 13.1 280 873-1155 137-440 (526)
69 TIGR02270 conserved hypothetic 98.1 0.00026 5.7E-09 84.1 21.6 208 894-1157 88-295 (410)
70 KOG1820 Microtubule-associated 98.0 0.00021 4.5E-09 90.4 20.4 157 815-979 302-459 (815)
71 KOG1820 Microtubule-associated 98.0 0.00027 5.9E-09 89.3 20.0 183 867-1057 269-453 (815)
72 KOG4224 Armadillo repeat prote 98.0 0.00089 1.9E-08 74.4 21.1 388 610-1048 92-494 (550)
73 PF05004 IFRD: Interferon-rela 98.0 0.0015 3.2E-08 75.2 24.3 194 813-1006 48-258 (309)
74 KOG2259 Uncharacterized conser 97.9 0.0029 6.3E-08 75.5 25.8 242 942-1200 206-475 (823)
75 COG1413 FOG: HEAT repeat [Ener 97.9 0.0023 5.1E-08 75.1 25.7 213 891-1152 42-267 (335)
76 TIGR02270 conserved hypothetic 97.9 0.0016 3.4E-08 77.5 23.9 240 808-1115 54-294 (410)
77 KOG4535 HEAT and armadillo rep 97.9 0.0063 1.4E-07 70.1 26.7 170 891-1061 432-617 (728)
78 KOG2032 Uncharacterized conser 97.8 0.0039 8.5E-08 72.6 24.3 138 869-1009 232-376 (533)
79 KOG2259 Uncharacterized conser 97.8 0.0015 3.2E-08 77.9 20.6 239 810-1073 200-466 (823)
80 KOG1993 Nuclear transport rece 97.7 0.26 5.7E-06 60.7 51.9 179 869-1052 462-649 (978)
81 KOG1992 Nuclear export recepto 97.7 0.27 6E-06 60.9 55.8 128 456-616 6-139 (960)
82 PF13513 HEAT_EZ: HEAT-like re 97.7 1.6E-05 3.4E-10 66.5 2.1 55 618-672 1-55 (55)
83 PF13513 HEAT_EZ: HEAT-like re 97.7 2.6E-05 5.6E-10 65.3 3.2 53 867-919 3-55 (55)
84 KOG1058 Vesicle coat complex C 97.7 0.023 5E-07 69.1 28.6 394 462-883 27-466 (948)
85 PF05804 KAP: Kinesin-associat 97.7 0.18 3.9E-06 63.9 37.9 367 620-1008 265-652 (708)
86 COG5240 SEC21 Vesicle coat com 97.7 0.017 3.7E-07 68.0 26.1 86 509-598 244-333 (898)
87 KOG1061 Vesicle coat complex A 97.7 0.01 2.2E-07 72.9 25.4 100 605-713 88-187 (734)
88 cd00020 ARM Armadillo/beta-cat 97.6 0.00012 2.5E-09 71.6 7.0 111 893-1005 8-120 (120)
89 COG1413 FOG: HEAT repeat [Ener 97.5 0.016 3.6E-07 68.0 24.4 243 938-1233 47-302 (335)
90 PF13646 HEAT_2: HEAT repeats; 97.5 0.00053 1.1E-08 63.3 9.3 86 894-1001 1-88 (88)
91 KOG0168 Putative ubiquitin fus 97.5 0.033 7.3E-07 68.6 26.3 177 870-1051 184-368 (1051)
92 KOG0413 Uncharacterized conser 97.5 0.65 1.4E-05 58.3 43.3 134 1075-1217 950-1090(1529)
93 KOG1077 Vesicle coat complex A 97.4 0.58 1.3E-05 57.1 36.1 242 819-1086 159-437 (938)
94 KOG1058 Vesicle coat complex C 97.4 0.18 3.9E-06 61.7 30.6 93 571-667 102-194 (948)
95 KOG1991 Nuclear transport rece 97.4 0.92 2E-05 57.7 60.5 366 638-1051 340-761 (1010)
96 KOG2062 26S proteasome regulat 97.3 0.78 1.7E-05 56.4 42.2 268 950-1248 395-666 (929)
97 KOG2956 CLIP-associating prote 97.3 0.011 2.4E-07 68.6 18.3 190 455-646 286-491 (516)
98 KOG0392 SNF2 family DNA-depend 97.3 1.3 2.8E-05 57.6 43.8 115 581-696 142-259 (1549)
99 KOG2032 Uncharacterized conser 97.2 0.73 1.6E-05 54.4 33.0 292 618-963 231-531 (533)
100 cd00020 ARM Armadillo/beta-cat 97.2 0.00095 2.1E-08 65.1 8.0 109 853-962 9-119 (120)
101 KOG2956 CLIP-associating prote 97.2 0.015 3.2E-07 67.5 18.2 147 526-677 322-480 (516)
102 PF05004 IFRD: Interferon-rela 97.2 0.032 6.8E-07 64.4 21.3 184 899-1082 50-257 (309)
103 PF11865 DUF3385: Domain of un 97.2 0.0027 5.9E-08 65.7 11.4 137 1011-1149 3-148 (160)
104 KOG0414 Chromosome condensatio 97.2 1.4 3.1E-05 57.0 54.7 162 929-1100 914-1083(1251)
105 KOG0891 DNA-dependent protein 97.2 2.6 5.7E-05 59.9 44.4 504 572-1095 485-1055(2341)
106 PF12717 Cnd1: non-SMC mitotic 97.2 0.024 5.2E-07 60.0 18.7 109 582-697 2-112 (178)
107 KOG1967 DNA repair/transcripti 97.1 0.0042 9.1E-08 77.0 13.5 154 847-1001 863-1020(1030)
108 KOG1243 Protein kinase [Genera 97.1 0.0036 7.9E-08 76.0 12.5 238 866-1117 269-515 (690)
109 KOG1078 Vesicle coat complex C 97.1 0.43 9.2E-06 59.1 29.3 283 600-920 242-531 (865)
110 KOG1078 Vesicle coat complex C 97.1 1.5 3.2E-05 54.6 34.7 241 972-1231 241-528 (865)
111 PF13646 HEAT_2: HEAT repeats; 97.0 0.0015 3.2E-08 60.3 6.8 85 537-629 3-88 (88)
112 PF05804 KAP: Kinesin-associat 97.0 0.42 9.1E-06 60.6 30.0 30 892-921 620-649 (708)
113 COG5240 SEC21 Vesicle coat com 97.0 1.3 2.8E-05 52.9 40.1 158 868-1045 392-553 (898)
114 KOG0168 Putative ubiquitin fus 97.0 1.9 4.1E-05 54.0 33.3 191 456-679 168-369 (1051)
115 KOG0413 Uncharacterized conser 96.9 0.75 1.6E-05 57.8 29.6 131 906-1051 945-1077(1529)
116 KOG2025 Chromosome condensatio 96.9 0.22 4.7E-06 60.7 24.6 170 973-1153 82-254 (892)
117 COG5096 Vesicle coat complex, 96.9 2.2 4.8E-05 54.1 39.2 157 505-672 32-193 (757)
118 KOG2274 Predicted importin 9 [ 96.9 2.2 4.7E-05 53.9 55.0 174 870-1047 507-689 (1005)
119 PF12717 Cnd1: non-SMC mitotic 96.9 0.019 4.2E-07 60.7 14.7 93 868-968 5-97 (178)
120 PF02985 HEAT: HEAT repeat; I 96.9 0.0012 2.6E-08 48.0 3.7 30 893-922 1-30 (31)
121 KOG1949 Uncharacterized conser 96.9 0.065 1.4E-06 64.7 19.7 147 895-1046 177-330 (1005)
122 PF10274 ParcG: Parkin co-regu 96.8 0.0093 2E-07 62.1 11.0 71 851-921 38-109 (183)
123 PF13251 DUF4042: Domain of un 96.8 0.015 3.2E-07 61.2 12.6 140 868-1007 3-176 (182)
124 PF02985 HEAT: HEAT repeat; I 96.7 0.0017 3.6E-08 47.3 3.4 30 646-675 1-30 (31)
125 KOG2022 Nuclear transport rece 96.7 3 6.6E-05 52.6 54.6 199 819-1028 435-642 (982)
126 PF14500 MMS19_N: Dos2-interac 96.6 0.18 3.8E-06 56.7 19.7 234 733-982 4-256 (262)
127 PF03378 CAS_CSE1: CAS/CSE pro 96.5 2.4 5.1E-05 51.4 30.1 199 601-806 69-276 (435)
128 PF10274 ParcG: Parkin co-regu 96.4 0.017 3.7E-07 60.2 9.8 119 932-1053 36-170 (183)
129 KOG1993 Nuclear transport rece 96.4 4.2 9.2E-05 50.8 34.9 126 571-697 529-666 (978)
130 PF12719 Cnd3: Nuclear condens 96.4 0.16 3.4E-06 58.6 18.7 124 879-1007 11-145 (298)
131 PF05918 API5: Apoptosis inhib 96.4 0.28 6.1E-06 60.0 21.1 90 581-675 35-126 (556)
132 KOG1077 Vesicle coat complex A 96.3 1.4 2.9E-05 54.1 25.4 224 983-1215 153-413 (938)
133 PF12719 Cnd3: Nuclear condens 96.2 0.48 1E-05 54.6 21.3 163 973-1140 23-208 (298)
134 KOG4653 Uncharacterized conser 96.1 0.18 3.8E-06 62.8 17.7 185 867-1058 743-928 (982)
135 KOG2137 Protein kinase [Signal 96.0 0.21 4.5E-06 61.5 17.7 223 868-1104 290-524 (700)
136 KOG2081 Nuclear transport regu 96.0 5.4 0.00012 48.3 31.9 132 820-965 364-497 (559)
137 KOG1293 Proteins containing ar 96.0 6 0.00013 48.6 33.4 136 868-1006 394-534 (678)
138 KOG2160 Armadillo/beta-catenin 96.0 0.36 7.8E-06 55.1 18.0 136 865-1006 97-241 (342)
139 KOG4653 Uncharacterized conser 96.0 1 2.2E-05 56.4 22.9 189 810-1006 729-919 (982)
140 PF14500 MMS19_N: Dos2-interac 95.9 2.2 4.9E-05 48.0 24.0 228 813-1058 4-248 (262)
141 PF05918 API5: Apoptosis inhib 95.9 0.72 1.6E-05 56.6 21.3 55 702-760 241-300 (556)
142 KOG0567 HEAT repeat-containing 95.9 0.46 9.9E-06 51.9 17.3 95 802-918 181-277 (289)
143 PF03378 CAS_CSE1: CAS/CSE pro 95.9 2.4 5.3E-05 51.3 25.7 211 850-1063 25-252 (435)
144 KOG2933 Uncharacterized conser 95.9 0.19 4.1E-06 56.0 14.7 136 864-1007 98-236 (334)
145 COG5218 YCG1 Chromosome conden 95.8 1.7 3.7E-05 52.2 23.0 173 973-1156 88-264 (885)
146 PF04826 Arm_2: Armadillo-like 95.8 0.16 3.5E-06 56.6 14.5 166 606-778 15-184 (254)
147 KOG2025 Chromosome condensatio 95.8 1.2 2.6E-05 54.6 22.2 107 889-1001 82-189 (892)
148 COG5116 RPN2 26S proteasome re 95.7 0.084 1.8E-06 62.3 11.9 162 537-706 520-682 (926)
149 PLN03076 ARF guanine nucleotid 95.7 5 0.00011 56.3 30.5 133 897-1030 1352-1514(1780)
150 KOG4413 26S proteasome regulat 95.5 5.5 0.00012 44.7 27.1 63 940-1006 310-378 (524)
151 KOG4535 HEAT and armadillo rep 95.4 7.6 0.00016 45.9 34.6 281 867-1153 271-598 (728)
152 PF05536 Neurochondrin: Neuroc 95.4 10 0.00022 47.4 31.2 152 853-1006 100-262 (543)
153 KOG1525 Sister chromatid cohes 95.4 3.7 8E-05 55.2 26.8 264 886-1160 46-331 (1266)
154 KOG0567 HEAT repeat-containing 95.4 0.59 1.3E-05 51.1 16.1 190 893-1112 68-275 (289)
155 PLN03076 ARF guanine nucleotid 95.4 20 0.00044 50.6 37.9 289 870-1162 1111-1493(1780)
156 PF13251 DUF4042: Domain of un 95.4 0.19 4.2E-06 52.9 12.3 173 470-677 1-177 (182)
157 PF11865 DUF3385: Domain of un 95.2 0.25 5.4E-06 51.3 12.4 73 851-923 86-159 (160)
158 KOG1243 Protein kinase [Genera 95.2 0.17 3.8E-06 62.0 12.7 240 424-677 263-518 (690)
159 KOG0392 SNF2 family DNA-depend 95.1 0.37 8.1E-06 62.2 15.7 132 870-1006 795-926 (1549)
160 KOG4413 26S proteasome regulat 95.1 1 2.2E-05 50.2 17.0 92 912-1006 63-158 (524)
161 PF08767 CRM1_C: CRM1 C termin 95.1 1.2 2.6E-05 51.8 19.0 142 847-988 67-226 (319)
162 KOG2549 Transcription initiati 95.1 1.1 2.5E-05 53.6 18.5 162 467-656 219-394 (576)
163 KOG2137 Protein kinase [Signal 94.9 0.71 1.5E-05 57.1 16.9 171 972-1147 345-526 (700)
164 PF04826 Arm_2: Armadillo-like 94.9 0.52 1.1E-05 52.6 14.7 148 893-1050 55-208 (254)
165 KOG1517 Guanine nucleotide bin 94.9 0.39 8.4E-06 60.9 14.7 191 799-1005 506-732 (1387)
166 KOG1967 DNA repair/transcripti 94.8 17 0.00037 46.5 42.8 206 868-1076 791-1018(1030)
167 PF01603 B56: Protein phosphat 94.8 1.7 3.7E-05 52.3 19.8 229 724-963 129-370 (409)
168 KOG2549 Transcription initiati 94.7 1.3 2.9E-05 53.0 17.8 161 813-985 212-392 (576)
169 KOG2933 Uncharacterized conser 94.6 0.3 6.4E-06 54.5 11.3 145 897-1050 93-237 (334)
170 KOG2022 Nuclear transport rece 94.5 19 0.00042 45.9 57.7 115 821-940 522-638 (982)
171 PF10521 DUF2454: Protein of u 94.5 3.9 8.5E-05 46.7 20.9 93 873-965 98-205 (282)
172 PF08506 Cse1: Cse1; InterPro 94.3 15 0.00032 43.7 25.6 200 949-1153 111-370 (370)
173 PF04118 Dopey_N: Dopey, N-ter 94.2 3 6.5E-05 47.9 19.0 173 822-1003 69-252 (307)
174 KOG0889 Histone acetyltransfer 94.1 33 0.00071 50.3 31.3 142 569-711 985-1151(3550)
175 COG5218 YCG1 Chromosome conden 94.1 19 0.00041 43.8 40.5 171 490-671 87-263 (885)
176 PF08506 Cse1: Cse1; InterPro 94.0 2 4.4E-05 50.8 17.6 206 869-1076 114-369 (370)
177 cd08050 TAF6 TATA Binding Prot 94.0 0.48 1E-05 55.6 12.3 120 816-947 186-322 (343)
178 KOG1517 Guanine nucleotide bin 93.9 1.2 2.6E-05 56.7 15.9 174 496-677 474-674 (1387)
179 PF04118 Dopey_N: Dopey, N-ter 93.8 2.2 4.8E-05 48.9 16.9 223 865-1116 22-253 (307)
180 KOG1949 Uncharacterized conser 93.8 1.9 4E-05 52.9 16.6 117 887-1006 215-332 (1005)
181 PF08767 CRM1_C: CRM1 C termin 93.6 14 0.0003 43.0 23.4 61 865-925 134-198 (319)
182 COG5095 TAF6 Transcription ini 93.5 1.3 2.9E-05 48.8 13.5 161 464-652 207-379 (450)
183 COG5116 RPN2 26S proteasome re 93.2 0.9 2E-05 54.1 12.5 267 951-1248 390-663 (926)
184 PF08569 Mo25: Mo25-like; Int 93.1 22 0.00047 41.6 24.4 184 866-1061 91-298 (335)
185 COG5095 TAF6 Transcription ini 93.1 1.3 2.9E-05 48.8 12.7 95 821-926 211-321 (450)
186 KOG4500 Rho/Rac GTPase guanine 93.1 23 0.00049 41.7 36.6 133 869-1003 284-429 (604)
187 PF08167 RIX1: rRNA processing 92.8 4.8 0.0001 42.0 16.3 117 887-1008 20-146 (165)
188 smart00638 LPD_N Lipoprotein N 92.4 2.8 6.2E-05 53.1 17.0 177 479-669 346-540 (574)
189 PF01347 Vitellogenin_N: Lipop 92.4 14 0.00029 47.5 23.2 264 893-1195 326-617 (618)
190 KOG1525 Sister chromatid cohes 92.2 60 0.0013 44.3 50.0 147 726-921 257-405 (1266)
191 PF08167 RIX1: rRNA processing 91.9 5.7 0.00012 41.4 15.6 129 854-985 28-164 (165)
192 KOG4524 Uncharacterized conser 91.4 56 0.0012 42.4 45.9 265 795-1062 570-898 (1014)
193 cd08050 TAF6 TATA Binding Prot 91.0 0.94 2E-05 53.2 9.5 100 599-698 206-321 (343)
194 KOG1822 Uncharacterized conser 90.9 86 0.0019 43.7 41.8 150 989-1140 839-1011(2067)
195 KOG1837 Uncharacterized conser 90.9 7.5 0.00016 52.3 18.0 163 514-677 1417-1614(1621)
196 PF13001 Ecm29: Proteasome sta 90.7 52 0.0011 40.9 27.1 120 807-928 318-450 (501)
197 PF10363 DUF2435: Protein of u 90.7 2.1 4.6E-05 39.9 9.6 84 978-1064 5-88 (92)
198 PF08064 UME: UME (NUC010) dom 90.6 3 6.6E-05 40.0 11.0 73 866-940 30-102 (107)
199 smart00638 LPD_N Lipoprotein N 90.5 26 0.00057 44.4 22.8 158 1018-1195 393-573 (574)
200 COG5234 CIN1 Beta-tubulin fold 90.2 59 0.0013 40.6 28.7 142 529-671 242-413 (993)
201 COG5656 SXM1 Importin, protein 89.7 67 0.0015 40.5 44.7 112 893-1006 642-758 (970)
202 PF01347 Vitellogenin_N: Lipop 89.6 5.6 0.00012 50.9 15.9 199 456-696 363-571 (618)
203 PF01603 B56: Protein phosphat 89.6 36 0.00077 41.2 21.6 138 869-1007 108-249 (409)
204 smart00802 UME Domain in UVSB 89.5 2.2 4.8E-05 40.9 8.9 72 605-678 13-87 (107)
205 PF05536 Neurochondrin: Neuroc 89.2 71 0.0015 40.1 33.8 159 887-1052 93-266 (543)
206 PF08064 UME: UME (NUC010) dom 89.1 2.5 5.5E-05 40.6 9.2 72 605-678 13-87 (107)
207 PF12231 Rif1_N: Rap1-interact 88.8 59 0.0013 38.7 31.8 228 905-1158 59-303 (372)
208 smart00802 UME Domain in UVSB 88.3 2.5 5.5E-05 40.5 8.4 73 866-940 30-102 (107)
209 PF08389 Xpo1: Exportin 1-like 88.1 2.3 5.1E-05 43.0 8.8 115 582-699 2-139 (148)
210 KOG2149 Uncharacterized conser 87.8 9.4 0.0002 44.6 14.0 110 899-1009 65-174 (393)
211 KOG2160 Armadillo/beta-catenin 87.7 28 0.0006 40.3 17.5 168 502-677 93-285 (342)
212 PF10521 DUF2454: Protein of u 87.5 11 0.00025 42.9 14.8 158 964-1141 107-277 (282)
213 PF12530 DUF3730: Protein of u 87.2 53 0.0012 36.4 21.9 139 854-1006 3-152 (234)
214 KOG2081 Nuclear transport regu 86.9 48 0.001 40.5 19.5 111 584-699 368-481 (559)
215 PF08623 TIP120: TATA-binding 86.8 7.1 0.00015 40.7 11.2 116 886-1006 3-148 (169)
216 PF00514 Arm: Armadillo/beta-c 86.7 1.2 2.5E-05 34.6 4.3 28 893-920 13-40 (41)
217 KOG1048 Neural adherens juncti 86.7 95 0.0021 39.5 22.7 105 899-1006 240-350 (717)
218 PF08161 NUC173: NUC173 domain 86.6 14 0.0003 39.8 13.8 75 983-1058 7-81 (198)
219 COG5098 Chromosome condensatio 86.2 9.3 0.0002 47.0 13.2 109 896-1006 303-416 (1128)
220 COG5656 SXM1 Importin, protein 85.8 1.1E+02 0.0024 38.7 49.9 235 812-1051 503-761 (970)
221 KOG2085 Serine/threonine prote 85.7 6.6 0.00014 45.7 11.2 117 846-963 294-414 (457)
222 KOG1822 Uncharacterized conser 85.7 1.8E+02 0.0039 41.0 50.2 176 869-1051 850-1042(2067)
223 cd00256 VATPase_H VATPase_H, r 85.4 95 0.0021 37.5 25.5 144 898-1047 107-258 (429)
224 PF12074 DUF3554: Domain of un 85.1 59 0.0013 38.2 19.7 96 849-947 20-120 (339)
225 PF10363 DUF2435: Protein of u 84.8 6.7 0.00015 36.5 9.1 85 895-989 6-90 (92)
226 PF04510 DUF577: Family of unk 84.4 15 0.00033 38.0 12.0 93 599-696 42-140 (174)
227 COG5101 CRM1 Importin beta-rel 83.9 1.2E+02 0.0026 37.5 38.9 140 909-1050 500-651 (1053)
228 KOG3961 Uncharacterized conser 83.9 8.4 0.00018 40.9 10.1 67 856-922 119-185 (262)
229 PF13001 Ecm29: Proteasome sta 83.8 18 0.00039 44.9 15.1 115 934-1050 319-446 (501)
230 PF12074 DUF3554: Domain of un 81.7 80 0.0017 37.0 18.9 85 975-1063 21-113 (339)
231 PF00790 VHS: VHS domain; Int 81.6 14 0.00031 37.3 10.9 78 890-967 40-122 (140)
232 PF12054 DUF3535: Domain of un 81.0 1.4E+02 0.0031 36.4 22.8 98 907-1008 102-211 (441)
233 cd03568 VHS_STAM VHS domain fa 80.8 27 0.00057 35.6 12.4 74 891-967 36-114 (144)
234 PF14631 FancD2: Fanconi anaem 80.6 2.7E+02 0.0058 39.3 27.8 100 454-566 209-308 (1426)
235 KOG0803 Predicted E3 ubiquitin 80.2 2.5E+02 0.0055 38.7 25.4 103 811-918 44-150 (1312)
236 PF14664 RICTOR_N: Rapamycin-i 80.2 1.4E+02 0.003 35.6 21.6 213 893-1117 26-269 (371)
237 PF08713 DNA_alkylation: DNA a 79.3 23 0.0005 38.3 12.5 148 465-623 61-209 (213)
238 PF14631 FancD2: Fanconi anaem 79.2 2.9E+02 0.0064 38.9 25.2 119 881-1006 424-543 (1426)
239 KOG0889 Histone acetyltransfer 79.0 4E+02 0.0086 40.3 42.4 199 809-1014 985-1210(3550)
240 PF00514 Arm: Armadillo/beta-c 78.9 3.6 7.8E-05 31.8 4.3 30 976-1005 12-41 (41)
241 KOG2011 Sister chromatid cohes 78.4 2.5E+02 0.0054 37.6 22.5 142 886-1040 280-428 (1048)
242 KOG4524 Uncharacterized conser 78.4 2.3E+02 0.005 37.2 48.2 55 870-924 567-621 (1014)
243 PF11864 DUF3384: Domain of un 78.4 1.8E+02 0.0038 35.9 34.0 16 987-1002 448-463 (464)
244 PF08161 NUC173: NUC173 domain 78.3 41 0.00089 36.2 13.5 67 512-578 20-86 (198)
245 KOG3961 Uncharacterized conser 78.0 10 0.00022 40.3 8.4 80 934-1014 114-197 (262)
246 PF14225 MOR2-PAG1_C: Cell mor 77.5 1.3E+02 0.0028 33.9 18.0 144 601-758 62-218 (262)
247 PF08713 DNA_alkylation: DNA a 77.0 13 0.00028 40.3 9.7 131 535-675 53-185 (213)
248 KOG1851 Uncharacterized conser 76.4 3.2E+02 0.007 37.9 34.7 113 807-925 1568-1682(1710)
249 PF12726 SEN1_N: SEN1 N termin 76.4 2.6E+02 0.0056 36.7 33.0 418 610-1061 90-567 (727)
250 KOG2973 Uncharacterized conser 74.9 1.6E+02 0.0035 33.6 19.1 65 939-1006 8-72 (353)
251 cd00256 VATPase_H VATPase_H, r 74.7 2.1E+02 0.0044 34.8 28.2 71 930-1005 353-425 (429)
252 PF08623 TIP120: TATA-binding 74.2 6.7 0.00015 40.8 6.0 76 618-696 41-116 (169)
253 KOG2005 26S proteasome regulat 73.7 2.5E+02 0.0054 35.3 33.3 67 1047-1113 634-700 (878)
254 KOG2122 Beta-catenin-binding p 73.5 2.1E+02 0.0044 39.4 19.6 95 908-1004 501-600 (2195)
255 PF03224 V-ATPase_H_N: V-ATPas 73.5 18 0.0004 41.9 10.2 109 894-1005 107-227 (312)
256 PF11229 DUF3028: Protein of u 71.8 60 0.0013 39.3 13.4 93 913-1005 18-127 (589)
257 cd03561 VHS VHS domain family; 71.2 63 0.0014 32.3 12.0 77 891-968 36-117 (133)
258 KOG2021 Nuclear mRNA export fa 71.0 3E+02 0.0066 35.1 52.0 115 869-986 458-586 (980)
259 PF12530 DUF3730: Protein of u 70.4 1.8E+02 0.0038 32.2 20.8 198 978-1184 2-216 (234)
260 PF12765 Cohesin_HEAT: HEAT re 70.1 7.5 0.00016 30.4 4.0 26 891-916 17-42 (42)
261 PF07571 DUF1546: Protein of u 69.4 16 0.00035 34.0 6.8 61 902-963 16-78 (92)
262 cd03569 VHS_Hrs_Vps27p VHS dom 68.4 52 0.0011 33.4 10.8 75 891-968 40-119 (142)
263 KOG2149 Uncharacterized conser 68.3 42 0.00091 39.5 11.1 107 576-683 66-179 (393)
264 KOG0414 Chromosome condensatio 67.3 4.4E+02 0.0095 35.6 58.7 135 1018-1157 919-1063(1251)
265 KOG1293 Proteins containing ar 67.2 3.4E+02 0.0073 34.2 43.8 101 946-1046 389-489 (678)
266 COG5098 Chromosome condensatio 66.1 83 0.0018 39.3 13.2 106 940-1047 305-415 (1128)
267 KOG1999 RNA polymerase II tran 65.4 44 0.00096 43.2 11.3 7 287-293 854-860 (1024)
268 PF03224 V-ATPase_H_N: V-ATPas 65.4 2.6E+02 0.0057 32.3 19.6 69 977-1046 106-178 (312)
269 PF14668 RICTOR_V: Rapamycin-i 64.5 8.6 0.00019 34.1 3.7 59 993-1054 4-65 (73)
270 PF12231 Rif1_N: Rap1-interact 64.4 3.1E+02 0.0066 32.7 30.9 154 810-963 177-352 (372)
271 smart00185 ARM Armadillo/beta- 64.0 9.6 0.00021 28.9 3.6 28 893-920 13-40 (41)
272 cd03568 VHS_STAM VHS domain fa 63.8 1.2E+02 0.0025 31.0 12.3 57 869-925 55-114 (144)
273 PF14664 RICTOR_N: Rapamycin-i 63.5 3.2E+02 0.0069 32.6 23.9 95 943-1047 35-137 (371)
274 cd06561 AlkD_like A new struct 63.2 56 0.0012 34.8 10.7 86 536-622 108-194 (197)
275 PF11935 DUF3453: Domain of un 62.2 2.6E+02 0.0056 31.1 16.6 121 900-1025 1-160 (239)
276 smart00288 VHS Domain present 61.8 1.5E+02 0.0033 29.6 12.7 77 891-967 36-115 (133)
277 PF14222 MOR2-PAG1_N: Cell mor 61.5 4E+02 0.0087 33.6 18.9 110 930-1046 129-248 (552)
278 KOG1222 Kinesin associated pro 61.4 3.6E+02 0.0079 32.5 27.5 70 1086-1157 588-662 (791)
279 KOG0946 ER-Golgi vesicle-tethe 60.5 4.8E+02 0.01 33.7 38.4 31 456-486 23-54 (970)
280 KOG2199 Signal transducing ada 60.1 1E+02 0.0022 36.0 12.0 111 864-987 22-138 (462)
281 KOG0946 ER-Golgi vesicle-tethe 58.6 5.2E+02 0.011 33.4 30.9 244 866-1112 137-432 (970)
282 PF11919 DUF3437: Domain of un 58.5 19 0.00041 33.4 5.0 56 619-675 4-59 (90)
283 COG4912 Predicted DNA alkylati 56.8 38 0.00083 36.6 7.6 79 591-675 102-184 (222)
284 cd07064 AlkD_like_1 A new stru 55.8 3E+02 0.0065 29.8 15.8 138 465-613 56-194 (208)
285 KOG4199 Uncharacterized conser 55.3 3.9E+02 0.0084 31.0 28.0 51 869-920 162-218 (461)
286 KOG0803 Predicted E3 ubiquitin 53.6 8.1E+02 0.018 34.2 22.7 92 869-961 59-151 (1312)
287 PF12397 U3snoRNP10: U3 small 53.6 69 0.0015 31.3 8.5 71 601-675 4-75 (121)
288 PF08389 Xpo1: Exportin 1-like 52.2 1E+02 0.0022 30.7 10.0 104 892-1000 26-148 (148)
289 PF11701 UNC45-central: Myosin 51.8 67 0.0015 33.2 8.4 100 656-758 16-118 (157)
290 PF07571 DUF1546: Protein of u 51.5 70 0.0015 29.8 7.7 58 616-673 18-77 (92)
291 PF12765 Cohesin_HEAT: HEAT re 50.4 16 0.00035 28.6 2.7 25 644-668 17-41 (42)
292 cd03567 VHS_GGA VHS domain fam 49.4 1.6E+02 0.0035 29.8 10.4 77 975-1051 37-120 (139)
293 PF12333 Ipi1_N: Rix1 complex 49.4 32 0.00068 32.8 5.1 59 638-696 4-63 (102)
294 COG5101 CRM1 Importin beta-rel 49.4 6.4E+02 0.014 31.7 52.4 153 869-1026 501-666 (1053)
295 cd03567 VHS_GGA VHS domain fam 49.1 3E+02 0.0065 27.9 13.3 75 892-966 38-119 (139)
296 cd07064 AlkD_like_1 A new stru 48.8 3.5E+02 0.0075 29.3 13.8 68 601-675 113-180 (208)
297 KOG1848 Uncharacterized conser 48.6 9.3E+02 0.02 33.4 22.7 241 945-1200 853-1132(1610)
298 cd03572 ENTH_epsin_related ENT 48.5 47 0.001 32.7 6.2 32 453-484 35-67 (122)
299 PF13764 E3_UbLigase_R4: E3 ub 47.8 8E+02 0.017 32.4 26.0 12 887-898 349-360 (802)
300 PF11698 V-ATPase_H_C: V-ATPas 47.6 43 0.00093 32.8 5.7 69 975-1046 42-114 (119)
301 smart00185 ARM Armadillo/beta- 47.4 23 0.00049 26.7 3.2 28 646-673 13-40 (41)
302 PF14228 MOR2-PAG1_mid: Cell m 47.3 9.4E+02 0.02 33.1 25.2 61 1173-1233 505-570 (1120)
303 PF14228 MOR2-PAG1_mid: Cell m 47.3 3.9E+02 0.0085 36.5 16.2 54 510-563 934-987 (1120)
304 PF11698 V-ATPase_H_C: V-ATPas 47.3 85 0.0018 30.8 7.7 70 892-963 43-115 (119)
305 PF12830 Nipped-B_C: Sister ch 46.4 3.9E+02 0.0084 28.4 18.3 68 977-1049 9-76 (187)
306 KOG1988 Uncharacterized conser 46.1 8.2E+02 0.018 32.0 17.7 129 981-1112 29-163 (970)
307 cd03569 VHS_Hrs_Vps27p VHS dom 45.8 3.4E+02 0.0073 27.5 12.3 57 869-925 59-118 (142)
308 PF00790 VHS: VHS domain; Int 45.4 94 0.002 31.4 8.2 76 973-1051 39-122 (140)
309 cd03561 VHS VHS domain family; 44.7 2.7E+02 0.0058 27.8 11.3 78 974-1051 35-116 (133)
310 KOG2005 26S proteasome regulat 44.5 2.7E+02 0.0058 35.1 12.7 88 579-673 426-517 (878)
311 KOG4199 Uncharacterized conser 44.3 5.7E+02 0.012 29.7 27.9 149 894-1046 285-443 (461)
312 PF11701 UNC45-central: Myosin 43.8 54 0.0012 33.9 6.3 97 904-1006 17-118 (157)
313 PF11919 DUF3437: Domain of un 43.7 55 0.0012 30.4 5.5 57 507-564 4-60 (90)
314 PF12397 U3snoRNP10: U3 small 43.5 2.1E+02 0.0046 27.8 10.2 74 888-965 2-76 (121)
315 cd06561 AlkD_like A new struct 43.3 68 0.0015 34.1 7.3 64 606-675 108-171 (197)
316 KOG2973 Uncharacterized conser 43.2 5.7E+02 0.012 29.4 23.1 97 863-963 15-111 (353)
317 PF14911 MMS22L_C: S-phase gen 42.1 6.6E+02 0.014 29.9 16.2 216 993-1238 32-294 (373)
318 KOG1851 Uncharacterized conser 42.0 1.2E+03 0.026 32.8 38.1 150 891-1046 1525-1677(1710)
319 PF14225 MOR2-PAG1_C: Cell mor 41.1 5.7E+02 0.012 28.8 22.7 144 973-1120 61-220 (262)
320 KOG2021 Nuclear mRNA export fa 40.5 9.3E+02 0.02 31.1 50.3 197 865-1061 504-742 (980)
321 smart00288 VHS Domain present 40.2 3.5E+02 0.0076 27.0 11.3 77 974-1050 35-114 (133)
322 KOG2199 Signal transducing ada 39.1 4.5E+02 0.0097 31.1 12.8 57 869-925 63-122 (462)
323 PF11935 DUF3453: Domain of un 39.1 5.7E+02 0.012 28.4 13.8 63 944-1006 3-73 (239)
324 PF12054 DUF3535: Domain of un 38.8 8.1E+02 0.018 29.9 22.1 204 470-677 102-345 (441)
325 KOG2734 Uncharacterized conser 38.3 7.9E+02 0.017 29.7 19.8 86 1142-1229 330-432 (536)
326 KOG1823 DRIM (Down-regulated i 37.5 1.3E+03 0.029 32.0 50.4 52 641-695 560-611 (1364)
327 PF09324 DUF1981: Domain of un 35.9 1.1E+02 0.0025 28.0 6.4 57 1098-1154 28-84 (86)
328 cd03565 VHS_Tom1 VHS domain fa 35.5 4.8E+02 0.01 26.4 13.0 77 891-968 37-120 (141)
329 PF12333 Ipi1_N: Rix1 complex 34.9 79 0.0017 30.1 5.4 62 968-1030 3-65 (102)
330 KOG2085 Serine/threonine prote 34.8 5E+02 0.011 31.0 12.5 221 810-1046 179-413 (457)
331 PF12612 TFCD_C: Tubulin foldi 32.6 4.1E+02 0.0089 28.3 11.1 134 866-1006 22-159 (193)
332 PF07539 DRIM: Down-regulated 32.3 2.4E+02 0.0052 28.6 8.6 19 464-482 26-44 (141)
333 PF04388 Hamartin: Hamartin pr 31.3 5.6E+02 0.012 33.1 13.8 107 583-695 48-161 (668)
334 cd03572 ENTH_epsin_related ENT 31.2 1.8E+02 0.0039 28.8 7.2 72 601-673 36-118 (122)
335 PF04388 Hamartin: Hamartin pr 31.0 6.5E+02 0.014 32.6 14.3 157 456-654 5-161 (668)
336 KOG1222 Kinesin associated pro 30.2 1.1E+03 0.023 28.8 27.2 27 895-921 637-663 (791)
337 PF08146 BP28CT: BP28CT (NUC21 30.1 5.4E+02 0.012 26.4 10.9 74 931-1005 56-147 (153)
338 cd00197 VHS_ENTH_ANTH VHS, ENT 28.8 5.3E+02 0.011 24.7 10.8 73 888-960 33-112 (115)
339 cd00197 VHS_ENTH_ANTH VHS, ENT 28.3 3.4E+02 0.0075 26.0 8.8 37 973-1009 34-70 (115)
340 PF10193 Telomere_reg-2: Telom 27.1 3.4E+02 0.0074 26.4 8.4 84 989-1078 18-111 (114)
341 PF08569 Mo25: Mo25-like; Int 26.9 1.1E+03 0.023 27.7 24.2 190 975-1199 75-282 (335)
342 KOG1087 Cytosolic sorting prot 26.5 5.7E+02 0.012 31.4 11.8 71 1129-1204 38-116 (470)
343 PF09324 DUF1981: Domain of un 26.3 2.1E+02 0.0045 26.3 6.4 66 604-670 19-84 (86)
344 cd03565 VHS_Tom1 VHS domain fa 26.1 7E+02 0.015 25.2 12.1 56 870-925 58-119 (141)
345 PF14868 DUF4487: Domain of un 25.8 8.2E+02 0.018 30.9 13.3 136 530-674 409-552 (559)
346 KOG3687 Tuberin - Rap/ran-GTPa 25.2 1.8E+03 0.038 29.6 26.4 91 1015-1105 425-531 (1697)
347 KOG2038 CAATT-binding transcri 24.4 1.7E+03 0.036 29.1 26.0 66 875-945 474-545 (988)
348 PF04510 DUF577: Family of unk 24.0 4.5E+02 0.0098 27.6 8.8 89 603-698 3-96 (174)
349 COG5221 DOP1 Dopey and related 23.9 5.2E+02 0.011 34.4 10.9 50 495-546 110-159 (1618)
350 KOG1932 TATA binding protein a 23.4 1.7E+03 0.038 30.2 15.6 84 895-986 677-776 (1180)
351 KOG2213 Apoptosis inhibitor 5/ 23.2 1.3E+03 0.029 27.5 24.9 310 617-999 37-370 (460)
352 KOG2753 Uncharacterized conser 23.2 1.2E+03 0.027 27.1 14.0 32 1018-1050 107-138 (378)
353 PF12243 CTK3: CTD kinase subu 22.6 3.6E+02 0.0079 27.3 7.7 63 1019-1084 9-71 (139)
354 PF14222 MOR2-PAG1_N: Cell mor 22.5 1.6E+03 0.035 28.3 28.6 67 1110-1178 450-518 (552)
355 KOG1087 Cytosolic sorting prot 22.5 8.9E+02 0.019 29.8 12.4 75 891-967 37-116 (470)
356 PF11864 DUF3384: Domain of un 22.1 1.5E+03 0.033 27.7 33.0 146 972-1121 172-335 (464)
357 PHA02855 anti-apoptotic membra 22.0 6.2E+02 0.013 26.2 9.0 39 888-926 72-111 (180)
358 COG5369 Uncharacterized conser 20.8 1.3E+03 0.028 28.7 12.7 78 1085-1162 428-506 (743)
359 PHA02836 putative transmembran 20.5 1.3E+02 0.0029 29.5 3.9 36 869-904 105-141 (153)
360 smart00567 EZ_HEAT E-Z type HE 20.4 1.6E+02 0.0035 20.7 3.6 28 1033-1064 2-29 (30)
361 COG5657 CSE1 CAS/CSE protein i 20.3 2.1E+03 0.045 28.7 54.9 148 456-636 5-155 (947)
362 COG5369 Uncharacterized conser 20.2 2.2E+02 0.0047 34.9 6.4 113 892-1005 431-545 (743)
363 PF14668 RICTOR_V: Rapamycin-i 20.1 1.3E+02 0.0027 26.9 3.5 55 620-675 3-59 (73)
No 1
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.2e-241 Score=2021.06 Aligned_cols=1144 Identities=73% Similarity=1.136 Sum_probs=1074.9
Q ss_pred ccccccccccCCCCcccccccccCCCcccccccCCchHHhhhhccccCchhhhhcCCCCCCCCCCCCCcCCCCCCchhhh
Q 000827 23 TSLTFDRDLYGGTDRDAYVSSIPVNDEDDANVDSMDSEVARKLASYTAPKSLLNEMPRGGDDDGSNDNLGFKKPGRIIDR 102 (1265)
Q Consensus 23 ~~~~~d~~~y~~~~~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~ytap~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r 102 (1265)
.+|+||+||||+++.++|++||++++++|.|+| +.+..+++..+|+||..+++|.++.. +++|++++++.++|+||
T Consensus 25 ~~~~~d~~~y~~~~~~~y~~si~~~~~~~~d~d-~~~~~~q~~~~y~~p~~~l~e~a~~~---e~~d~~~~~~~~~i~~r 100 (1172)
T KOG0213|consen 25 TGGQFDADLYGSSDPESYSTSIAANEADDVDED-STPLVGQKSTPYTAPESLLNEVARIE---EEYDPMAEKRTKTIADR 100 (1172)
T ss_pred hcCccchhhhCCCChhhcccccccccccccccc-cccccccccCcccchHHHHHHhhhhc---cccChhhhccccchhhh
Confidence 359999999999888999999999998887776 45556789999999999999999875 67889999899999999
Q ss_pred hHHHHHHHhhcccCCCCCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcc
Q 000827 103 EDEYRRRRLQRVISPERHDAFAAGEKTPDPSVRTYVEVMREQAHMREREETLKQIAQKKKEEEEAAKAESGSKRRNRWDQ 182 (1265)
Q Consensus 103 e~~y~~rr~~r~~sp~r~D~Fa~~~~~~~~~~~ty~d~m~e~~l~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~rwd~ 182 (1265)
|++||+||++|+|||+|.|||++ +||| +|||+|+||||++++||.+++|+|++|.|+|++....++ .+ | +
T Consensus 101 e~~y~~~r~~~~~sp~r~d~f~~--~~~d--~rty~~~mre~~l~~e~~~~~~~l~~~~k~g~~~~~~~~-~~---~--~ 170 (1172)
T KOG0213|consen 101 EDEYHKRRRDRQISPDRVDAFAD--KTPD--GRTYTDVMREQMLEKEEREVRRELAEKAKEGEEHSTSQP-KK---R--L 170 (1172)
T ss_pred hhHHHHHhhccccCccccccccc--CCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCc-hh---c--c
Confidence 99999999999999999999998 7887 599999999999999999999999999999965322221 11 1 1
Q ss_pred ccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000827 183 SQDEAVPAPAKKAKPEAASSDWDLPDSTPGVSGRWDATPTPGRVSDATPSAGRRNRWDETPTPGRVADSDGTPAGGVTPG 262 (1265)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~tp~~~~~~~~~~~~~~~srWD~tP~~~~~~~~~~~~~~~~~~~ 262 (1265)
+..++ . .. .++|||||||||.. .++.
T Consensus 171 ~~~~t-------------------~-------------------~a---~~prrnrwdetp~~-------------~t~~ 196 (1172)
T KOG0213|consen 171 EANNT-------------------A-------------------SA---ATPRRNRWDETPPG-------------VTPV 196 (1172)
T ss_pred CCCcc-------------------c-------------------cc---cCccccccccCCCC-------------CCCC
Confidence 10000 0 00 13488999999931 1233
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCcccccCCCCCCCCCCCCCCCCCCCC-cccCC-cCcCCCCCcccccccCCCCHH
Q 000827 263 ATPAGMTWDATPKGLATPTPKRQRSRWDETPATMGSATPMAGATPAAAYTPG-VTPVG-AVDVATPTPSAINLRGALTPE 340 (1265)
Q Consensus 263 ~tp~~~~~~~tp~~~~t~~~~~~rs~~d~tp~~~~~~~~~~~~~p~~~~~p~-~~p~~-~~~~~tp~~~~~~~~~~~~~~ 340 (1265)
+|+.... +..||+++||||||||||.... +.-.||.++|+ +||.| .+.|+||+|.
T Consensus 197 ~~~~~~~------~e~tp~~~KrrSrWDe~p~~s~------~~~t~~~~tP~~~t~~g~~~~~~tp~~l----------- 253 (1172)
T KOG0213|consen 197 ATRMEDK------GEDTPRSTKRRSRWDETPNASR------GNVTPWEVTPGTATPIGRLKWDQTPTPL----------- 253 (1172)
T ss_pred CCccccc------cCcCccccchhhhccCCccccc------ccCCcceecCCCcCcccccccccCCccc-----------
Confidence 3332222 2335567889999999997642 23346677776 88988 5779999974
Q ss_pred HHhhhhhhhhhcccCCCCCHHHhhhcCCCCCceecCCCCCCCCCCCchhhcccCCCCCCCCccccCCCCcCCCCCCCCCC
Q 000827 341 QYNLMRWEKDIEERNRPLTDEELDAMFPQEGYKILDPPPSYVPIRTPARKLLATPTPLGTPLYQIPEENRGQQFDVPKEA 420 (1265)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (1265)
+.+||+++++.+|++++++++|+++|.+||+++.||.+|.++++| +|++||+|.. +|.||.+++...+ ...++
T Consensus 254 --~~~RwE~~l~~~~R~~~~eeld~~~p~~gy~~l~pp~~y~~i~tp--kl~~~~tp~~--g~~~~~e~~~~k~-~~~~~ 326 (1172)
T KOG0213|consen 254 --GYIRWEKDLWSRNRPLTDEELDALFPDSGYKVLYPPMGYREIRTP--KLMATPTPAR--GFHMPQEDRPEKY-VDYDP 326 (1172)
T ss_pred --ceeehhhhcccccCCCchhhhhhhcCcccccccCCCcccccccch--hhhcCCcccc--ccccccccccccc-ccCCC
Confidence 246999999999999999999999999999999999999999999 8999999965 5999999875443 33455
Q ss_pred CC--CCCCCChhhHHhHHhhcCcCCCCCCChhHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHH
Q 000827 421 PG--GLPFMKPEDYQYFGALLNEDEEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPL 498 (1265)
Q Consensus 421 ~~--~l~~~~~~d~~~f~~l~~~~~~~~l~~~~~~~~~i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~ 498 (1265)
.+ +|||||++|.+||++++...+++.|+++|++|++||++||++|||++.+|+.++|+|+++|++||++++||++||+
T Consensus 327 ~g~~~l~flkpeD~~yf~~ll~d~~e~~L~~~e~kEr~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpl 406 (1172)
T KOG0213|consen 327 HGYAGLPFLKPEDLQYFADLLKDFDEPLLEDEEGKERKIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPL 406 (1172)
T ss_pred CCcCCCCcCChhhHHHHHHHHhhcChhhcCcccccHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 55 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCC
Q 000827 499 LMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDID 578 (1265)
Q Consensus 499 l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~ 578 (1265)
+|+..|+||+||.+|++|++|+++++++++||+|+||.+|+|+|+|||+++|.++++||+||++++|+++|+++|+|+++
T Consensus 407 lMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILvViepllided~yar~egreIisnLakaaGla~mistmrpDid 486 (1172)
T KOG0213|consen 407 LMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDID 486 (1172)
T ss_pred HcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHhhhChhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCC
Q 000827 579 NIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDEN 658 (1265)
Q Consensus 579 ~~d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~ 658 (1265)
+.|+|||++++++++++|+++|+|+|+|||+++|.|++||+.||+|++++++||+.+||.+.|||..++.+|.+++.|++
T Consensus 487 n~deYVRnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~ 566 (1172)
T KOG0213|consen 487 NKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQ 566 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhC
Q 000827 659 QKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQ 738 (1265)
Q Consensus 659 ~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~ 738 (1265)
.+||..++.+++.+++++.||+++.|+.+|.+||++++.|+++.+++|+++++++||+|+++|+.||++++|-+++++|+
T Consensus 567 qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~ 646 (1172)
T KOG0213|consen 567 QKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFG 646 (1172)
T ss_pred hhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHHHHHhc
Q 000827 739 SPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLK 818 (1265)
Q Consensus 739 ~~de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i~~~l~ 818 (1265)
++|++|++.+|+++++||.++|++++|++.+++|.||..||.++++.|+++++++++++++||+++|..+++.+++..++
T Consensus 647 sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lk 726 (1172)
T KOG0213|consen 647 SPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLK 726 (1172)
T ss_pred CChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHH
Q 000827 819 DESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIK 898 (1265)
Q Consensus 819 d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll 898 (1265)
|++++||+++++++.+++..+|..+++++++++++++++++||+++.++. .++.+||++++.+|.+++||+|+|+++++
T Consensus 727 de~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL 805 (1172)
T KOG0213|consen 727 DEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTIL 805 (1172)
T ss_pred cccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988884 89999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHH
Q 000827 899 WRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLL 978 (1265)
Q Consensus 899 ~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Ll 978 (1265)
+.|++++++||++|++++++|+.+|+.|.++++|.+|+.+|+++|+++||+|++++++|++.|++++|.+.+.|++++|+
T Consensus 806 ~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dll 885 (1172)
T KOG0213|consen 806 WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLL 885 (1172)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcHHHHHHH
Q 000827 979 PRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATL 1058 (1265)
Q Consensus 979 p~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~L 1058 (1265)
|+|+++|+|+|++|+++|+.++|.||..++++++.+|||+||++|+++|+++++.+|++|+++||+|++++||++||.+|
T Consensus 886 PrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatL 965 (1172)
T KOG0213|consen 886 PRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATL 965 (1172)
T ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHh
Q 000827 1059 LNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDAL 1138 (1265)
Q Consensus 1059 l~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l 1138 (1265)
||+|++|||++|+|+++||++|+|+||||+|||+||++|++|+.|||||||++++|+|+|||+++++|+|+++|+|+++|
T Consensus 966 lnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAl 1045 (1172)
T KOG0213|consen 966 LNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDAL 1045 (1172)
T ss_pred HhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhcccCChHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcch
Q 000827 1139 MDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHP 1218 (1265)
Q Consensus 1139 ~d~d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~~~s~~v~~~~~~a~~~~~~~~g~~~~~~~~~~gl~~~ 1218 (1265)
+|+|++|||+|+++++||++||+|.||||+++|+||++|||||++||||++++.+|+++++.++|++.+++|++||||||
T Consensus 1046 mDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QGLFHP 1125 (1172)
T KOG0213|consen 1046 MDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYCLQGLFHP 1125 (1172)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhhhccccCcceeccCCCCccCCCccccccccccC
Q 000827 1219 ARKVREVYWKIYNSLYIGAQDALVAAYPTLADEQSNVYSRPELMMFV 1265 (1265)
Q Consensus 1219 a~~vr~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 1265 (1265)
|++||+.||++||++|++++|+|+||||.++++.++.|.|.||||+|
T Consensus 1126 arkVR~~yw~vyn~my~~~~dalv~~ypv~ed~p~n~y~~~eld~~l 1172 (1172)
T KOG0213|consen 1126 ARKVRKRYWTVYNSMYHGSQDALVACYPVEEDDPENAYYRYELDYVL 1172 (1172)
T ss_pred HHHHHHHHHHHHHhHhhcccchhhhccccCCCCcchhhhhhhhcccC
Confidence 99999999999999999999999999999999999999999999986
No 2
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=100.00 E-value=1.1e-163 Score=1364.98 Aligned_cols=840 Identities=53% Similarity=0.833 Sum_probs=824.2
Q ss_pred CCCCCChhhHHhHHhhcCcCCCCCCChhHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhcCC
Q 000827 423 GLPFMKPEDYQYFGALLNEDEEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQP 502 (1265)
Q Consensus 423 ~l~~~~~~d~~~f~~l~~~~~~~~l~~~~~~~~~i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~~ 502 (1265)
+|.|||++|.+||+.++....+..|.++|++|+.+..+|+++|||.+.+|..++|.|+++|..||+..+||.+||++|+.
T Consensus 136 dl~ffk~eD~kyfad~~k~~~~~~L~~~e~~Er~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r 215 (975)
T COG5181 136 DLGFFKVEDLKYFADDEKDFFMPLLEDREGDERDVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSR 215 (975)
T ss_pred cccccchhhhhhHHhhhhhcchhhhhhcccchHhHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchH
Q 000827 503 TLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDE 582 (1265)
Q Consensus 503 ~led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~ 582 (1265)
.++||+||..|++|++++++++++.+||+|+||.++.|+|+|||+.+|.++++||.+|+.++|+.+++++|+|++++.|+
T Consensus 216 ~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~de 295 (975)
T COG5181 216 ELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDE 295 (975)
T ss_pred hhhhhhhHhHHHHHHHHHHhcccccccceeeEEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhChhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhH
Q 000827 583 YVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVR 662 (1265)
Q Consensus 583 ~vR~~aa~~l~~lA~~lg~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR 662 (1265)
|||+.++++++++|.++|+++|+|||.++|.|.+||+.||+++.+.++||+..||...+|+..++.+|.+++.|++..||
T Consensus 296 YVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vR 375 (975)
T COG5181 296 YVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVR 375 (975)
T ss_pred HHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCH
Q 000827 663 TITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDE 742 (1265)
Q Consensus 663 ~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de 742 (1265)
..++.+++.+++.+.||+++.|+.++.+||++.+.|+++.+++|++++|.+||+|+|+|+.+++++.|+++.++|+++|+
T Consensus 376 i~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spde 455 (975)
T COG5181 376 IDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDE 455 (975)
T ss_pred ehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHHHHHhcCCCh
Q 000827 743 EMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESE 822 (1265)
Q Consensus 743 ~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i~~~l~d~~~ 822 (1265)
+|++.++.+...|....+.++.++++++.|.||..||.++.+.|++.+++++.+++.+|+..|.+.+++.++..++|+.+
T Consensus 456 emkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~e 535 (975)
T COG5181 456 EMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPE 535 (975)
T ss_pred hcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcc
Confidence 99999999999888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhc
Q 000827 823 PYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLN 902 (1265)
Q Consensus 823 ~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~ 902 (1265)
+||++.+.+..+++..+|..+.++++++.++++++.+||+++.++ ..++.+|+++...++.+.+||+++|+++++++|+
T Consensus 536 p~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~-~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~ 614 (975)
T COG5181 536 PYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV-GLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLR 614 (975)
T ss_pred hhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc-cEEEecccceeeehhhccCcchHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999987776 4788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHH
Q 000827 903 NKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLT 982 (1265)
Q Consensus 903 d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll 982 (1265)
++.+.||+.|++++|.|+.+++.|.+...|.+|+.+|+++|+++||+|++++++|+..|.++.+...|+|++.+|+|.|+
T Consensus 615 ~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~lt 694 (975)
T COG5181 615 SKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLT 694 (975)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhh
Q 000827 983 PILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNL 1062 (1265)
Q Consensus 983 ~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~L 1062 (1265)
++|+|.|++|.++.+.++|.|+..++++++.+|||+||++|+++|++.++++|++|.++||+|++++||++|+.+|+|+|
T Consensus 695 PILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnL 774 (975)
T COG5181 695 PILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNL 774 (975)
T ss_pred HhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCC
Q 000827 1063 KVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRD 1142 (1265)
Q Consensus 1063 ~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d 1142 (1265)
++|||++|+|+++||++++|+||||+|+|+||+.|.+|+.|||||+|++++|+|+|+|+++.+|+|.++|+|+++++|+|
T Consensus 775 kvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD 854 (975)
T COG5181 775 KVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRD 854 (975)
T ss_pred hHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhcccCChHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcchhhHH
Q 000827 1143 LVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKV 1222 (1265)
Q Consensus 1143 ~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~~~s~~v~~~~~~a~~~~~~~~g~~~~~~~~~~gl~~~a~~v 1222 (1265)
++|||+|+++++|+++||.|.|.+|+++|+||.+|||||+++|||++++.+++++++.++|++.+++|+|||||||+++|
T Consensus 855 ~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGLFHPs~~V 934 (975)
T COG5181 855 PVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGLFHPSSTV 934 (975)
T ss_pred hHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHhccCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccccCcceeccCCCCccCCCccccccccccC
Q 000827 1223 REVYWKIYNSLYIGAQDALVAAYPTLADEQSNVYSRPELMMFV 1265 (1265)
Q Consensus 1223 r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 1265 (1265)
|+.||.+||+.|+..+|+|+||||..+|+ |.+...+|+++|
T Consensus 935 Rk~ywtvyn~myv~~~damvp~ypv~~d~--n~e~~~~l~i~i 975 (975)
T COG5181 935 RKRYWTVYNIMYVFDSDAMVPCYPVEEDL--NPELARTLHICI 975 (975)
T ss_pred HHHHHHHHhhhhhcccccccccccCCCCc--CHHHHhhhhccC
Confidence 99999999999999999999999988765 557788888875
No 3
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-89 Score=782.05 Aligned_cols=832 Identities=22% Similarity=0.293 Sum_probs=664.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC-CCCCCCCCCCC-----CCCCCCCCCcCcccccCCCCCCCCCC
Q 000827 232 SAGRRNRWDETPTPGRVADSDGTPAGGVTP-GATPAG-MTWDATPKGLA-----TPTPKRQRSRWDETPATMGSATPMAG 304 (1265)
Q Consensus 232 ~~~~~srWD~tP~~~~~~~~~~~~~~~~~~-~~tp~~-~~~~~tp~~~~-----t~~~~~~rs~~d~tp~~~~~~~~~~~ 304 (1265)
+++||||||+||..... +.||. ..+| ++||.+ .+|+.||.... .---.++|+..|++.++..|.+||++
T Consensus 210 ~~KrrSrWDe~p~~s~~---~~t~~-~~tP~~~t~~g~~~~~~tp~~l~~~RwE~~l~~~~R~~~~eeld~~~p~~gy~~ 285 (1172)
T KOG0213|consen 210 STKRRSRWDETPNASRG---NVTPW-EVTPGTATPIGRLKWDQTPTPLGYIRWEKDLWSRNRPLTDEELDALFPDSGYKV 285 (1172)
T ss_pred ccchhhhccCCcccccc---cCCcc-eecCCCcCcccccccccCCcccceeehhhhcccccCCCchhhhhhhcCcccccc
Confidence 36789999999965421 12222 2233 367755 67999885310 00124678999999999999999999
Q ss_pred CCCCCCCCCCcccCCcCcCCCCCcccccccCCCCHHHHhhhhhhhhhcccCCCCCHHHhhhcCCCCCceec---------
Q 000827 305 ATPAAAYTPGVTPVGAVDVATPTPSAINLRGALTPEQYNLMRWEKDIEERNRPLTDEELDAMFPQEGYKIL--------- 375 (1265)
Q Consensus 305 ~~p~~~~~p~~~p~~~~~~~tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 375 (1265)
+.||.+|.|.+|| +.|+||||.. ||.+|.+.+..++ .++-|-.-.+| .+|++|++++|
T Consensus 286 l~pp~~y~~i~tp---kl~~~~tp~~----g~~~~~e~~~~k~-----~~~~~~g~~~l-~flkpeD~~yf~~ll~d~~e 352 (1172)
T KOG0213|consen 286 LYPPMGYREIRTP---KLMATPTPAR----GFHMPQEDRPEKY-----VDYDPHGYAGL-PFLKPEDLQYFADLLKDFDE 352 (1172)
T ss_pred cCCCcccccccch---hhhcCCcccc----ccccccccccccc-----ccCCCCCcCCC-CcCChhhHHHHHHHHhhcCh
Confidence 9999999999999 7799999874 4777765432221 11111111234 37888999988
Q ss_pred -CCCCCCCCCCCchhhcc----cCCCCCCCCccccCCCCcCCCCCCCCCCCCCCCCCChh--------------------
Q 000827 376 -DPPPSYVPIRTPARKLL----ATPTPLGTPLYQIPEENRGQQFDVPKEAPGGLPFMKPE-------------------- 430 (1265)
Q Consensus 376 -~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------- 430 (1265)
.+..+..++|++|++|| |||.+|++++++++++++ .||+++.|+++||.+|+.
T Consensus 353 ~~L~~~e~kEr~i~~llLkvKNG~ppmRk~~LR~ltdkar--~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyk 430 (1172)
T KOG0213|consen 353 PLLEDEEGKERKIMRLLLKVKNGTPPMRKSALRILTDKAR--NFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYK 430 (1172)
T ss_pred hhcCcccccHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH--hhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHh
Confidence 67888999999999998 999999999999999987 899999999999888876
Q ss_pred ---------------------hHHhHHhhcCcCCCCCCChhHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHHhhcCCh
Q 000827 431 ---------------------DYQYFGALLNEDEEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAG 489 (1265)
Q Consensus 431 ---------------------d~~~f~~l~~~~~~~~l~~~~~~~~~i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~~ 489 (1265)
|++|+++.+++++++||++..|++.+|..|..+|.|-|++||+...|+++.+|++||.
T Consensus 431 lDdlvrpYVhkILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalgi- 509 (1172)
T KOG0213|consen 431 LDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGI- 509 (1172)
T ss_pred hcccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCc-
Confidence 9999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh---ch
Q 000827 490 PLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAA---GL 566 (1265)
Q Consensus 490 ~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~---Gl 566 (1265)
+.++.||..+|.+..+||.||++|+++++|+..+|+.+.||+..|+.+|+.+|.|+...||..++.+|+.|++++ |+
T Consensus 510 p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygi 589 (1172)
T KOG0213|consen 510 PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGI 589 (1172)
T ss_pred HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcch
Confidence 788899999999999999999999999999999999999999999999999999999999999999999999996 78
Q ss_pred HHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhChhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHH
Q 000827 567 ATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSL 646 (1265)
Q Consensus 567 ~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~l 646 (1265)
+.|.++|.|.|++ +|..-+..++.+.++.| .++| .++.-+++.++-..+.+.
T Consensus 590 e~fDsVlkpLwkg----ir~hrgk~laafLkAig--ylip----------lmd~eya~yyTrevmlil------------ 641 (1172)
T KOG0213|consen 590 EQFDSVLKPLWKG----IRQHRGKELAAFLKAIG--YLIP----------LMDAEYASYYTREVMLIL------------ 641 (1172)
T ss_pred HHHHHHHHHHHHH----HHHccChHHHHHHHHHh--hccc----------cccHHHHHHhHHHHHHHH------------
Confidence 9999999999875 44444444443333322 1111 123334444443333332
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHHHh--CccchhhhHHhHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhh
Q 000827 647 VEIIEHGLNDENQKVRTITALSLAALAEAA--APYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASY 724 (1265)
Q Consensus 647 l~~l~~~L~De~~~VR~~A~~aL~~lae~~--~p~~~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~ 724 (1265)
..-...++...+...+..+.+.+... .|..+ ...+++.+|..+|.++. +...+....++.......++.
T Consensus 642 ----~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~--r~dilp~ff~~fw~rrm---A~drr~ykqlv~ttv~ia~Kv 712 (1172)
T KOG0213|consen 642 ----IREFGSPDEEMKKIVLKVVKQCCATDGVEPAYI--RFDILPEFFFSFWGRRM---ALDRRNYKQLVDTTVEIAAKV 712 (1172)
T ss_pred ----HHhhCCChHHHHHHHHHHHHHHhcccCCCHHHH--hhhhhHHHHhhhhhhhh---hccccchhhHHHHHHHHHHHh
Confidence 22333344444444455555444332 23222 24889999999998762 222222333443444444455
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 000827 725 YTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKV 804 (1265)
Q Consensus 725 ~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~ 804 (1265)
+...++..++..+++..+.+|+++++.+..+++..|. ..+.+.+...+++++++.+++++.... .++.+++.+.+.+
T Consensus 713 G~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~--~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~l 789 (1172)
T KOG0213|consen 713 GSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGA--ADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNAL 789 (1172)
T ss_pred CchHHHHHHhhhhccccHHHHHHHHHHHHHHHhcccc--ccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHH
Confidence 6677888899999999999999999999999987763 335567778889999888877665433 4557777777777
Q ss_pred Ch------hhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHH-hhhcccchHHHHHHHHHH
Q 000827 805 GV------ADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYA-FQEQTSDDANVMLNGFGA 877 (1265)
Q Consensus 805 g~------~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~-l~e~~~ed~~~al~aL~~ 877 (1265)
|. ++++..+++.|+++++.+|+++++++..++..+..|.+... ... +..+|+. +++.++++..+++.|+.+
T Consensus 790 g~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~-m~~-lGvvLyEylgeeypEvLgsILgAika 867 (1172)
T KOG0213|consen 790 GGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKL-MGH-LGVVLYEYLGEEYPEVLGSILGAIKA 867 (1172)
T ss_pred hhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHH-HHH-hhHHHHHhcCcccHHHHHHHHHHHHH
Confidence 65 57899999999999999999999999999999887764322 222 2335554 466778888999999999
Q ss_pred HHHHhc-hhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH----------HHhhcchHHHHHHHHHHHHHhhCCC
Q 000827 878 VVNSLG-QRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAV----------VMKQCHEEQLMGHLGVVLYEYLGEE 946 (1265)
Q Consensus 878 I~~~lg-~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~----------~l~~~~~~~ll~~L~~~L~~~L~d~ 946 (1265)
|++..| ..+.|.+.+|+|.|+++|+++|.+|.+++++++|.||. ||+.||+
T Consensus 868 I~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfe------------------ 929 (1172)
T KOG0213|consen 868 IVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFE------------------ 929 (1172)
T ss_pred HHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHH------------------
Confidence 999999 56889999999999999999999999999999999994 7777774
Q ss_pred CHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHH
Q 000827 947 YPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEM 1026 (1265)
Q Consensus 947 ~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~ 1026 (1265)
|+++|+.+++.+|.+|.++||.|++..|.. ++|..||++
T Consensus 930 ----------------------------------LlelLkahkK~iRRaa~nTfG~IakaIGPq-------dVLatLlnn 968 (1172)
T KOG0213|consen 930 ----------------------------------LLELLKAHKKEIRRAAVNTFGYIAKAIGPQ-------DVLATLLNN 968 (1172)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHhhhhHHHHhcCHH-------HHHHHHHhc
Confidence 788889999999999999999999995543 799999999
Q ss_pred HhhchHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCC------cccHH----HHHhh
Q 000827 1027 LKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP------FTVLP----ALMNE 1096 (1265)
Q Consensus 1027 Lk~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp------~~vlP----aL~~~ 1096 (1265)
|+.++++.|.|+..+++.+++.|||+.|+|+|||.+++++.+++++++.+++++|+++|. |.|+| +||++
T Consensus 969 LkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDr 1048 (1172)
T KOG0213|consen 969 LKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR 1048 (1172)
T ss_pred chHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999999999986 57788 45544
Q ss_pred ----------------cCCCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHHHHHHHHHHHhcc
Q 000827 1097 ----------------YRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGV 1160 (1265)
Q Consensus 1097 ----------------~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~ 1160 (1265)
++.+...+.+.++|.|+++|+||.+.+.+.++++...++.. +.++|+
T Consensus 1049 D~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~-----------------r~~Lg~ 1111 (1172)
T KOG0213|consen 1049 DLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGL-----------------RVALGP 1111 (1172)
T ss_pred cHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHH-----------------HHHhch
Confidence 34555678889999999999999999999999999988877 677887
Q ss_pred cCCCchhHHHHHHHhhhhhcccCChHHHHHHHHHHHHHHHHhCHHHHHHH
Q 000827 1161 AGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNY 1210 (1265)
Q Consensus 1161 ~g~~~e~~~~~~ln~l~~~i~~~s~~v~~~~~~a~~~~~~~~g~~~~~~~ 1210 (1265)
. .+++|+|++||||+.+||..+|..|+.++....+..+..|
T Consensus 1112 ~---------~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~~dalv~~y 1152 (1172)
T KOG0213|consen 1112 Q---------AMLKYCLQGLFHPARKVRKRYWTVYNSMYHGSQDALVACY 1152 (1172)
T ss_pred H---------HHHHHHHHhccCcHHHHHHHHHHHHHhHhhcccchhhhcc
Confidence 6 8999999999999999999999999999987766554443
No 4
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=100.00 E-value=1.1e-58 Score=520.24 Aligned_cols=704 Identities=17% Similarity=0.181 Sum_probs=541.1
Q ss_pred CCCCCCCCCchhhcc----cCCCCCCCCccccCCCCcCCCCCCCCCCCCCCCCCChh-----------------------
Q 000827 378 PPSYVPIRTPARKLL----ATPTPLGTPLYQIPEENRGQQFDVPKEAPGGLPFMKPE----------------------- 430 (1265)
Q Consensus 378 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------- 430 (1265)
......+|+..++|+ |++.+|+++++.+++.+. .||+...|++.||.+++-
T Consensus 161 ~~~e~~Er~v~rllLkvKNG~~~mR~~~lRiLtdkav--~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~ldd 238 (975)
T COG5181 161 EDREGDERDVYRLLLKVKNGGKRMRMEGLRILTDKAV--NFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDD 238 (975)
T ss_pred hhcccchHhHHHHHhhcccCCchhhHHHHHHHHHHhh--cccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhccc
Confidence 344566788888887 899999999999998866 777766777777766664
Q ss_pred ------------------hHHhHHhhcCcCCCCCCChhHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHHhhcCChhhH
Q 000827 431 ------------------DYQYFGALLNEDEEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLF 492 (1265)
Q Consensus 431 ------------------d~~~f~~l~~~~~~~~l~~~~~~~~~i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~~~~~ 492 (1265)
|+++..+-++++++.||+...|...++..|..+|.|.|++||+...|+++.+|.+||. +-+
T Consensus 239 l~~pyvhkILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv-~~l 317 (975)
T COG5181 239 LKVPYVHKILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGV-EEL 317 (975)
T ss_pred ccccceeeEEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCc-HHH
Confidence 8889999999999999999999999999999999999999999999999999999997 667
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh---chHHH
Q 000827 493 NRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAA---GLATM 569 (1265)
Q Consensus 493 ~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~---Gl~~~ 569 (1265)
+.||..+|.+.++|+.||++|+++++|+..+|..+.+|+..++.+|..+|.|+...||..++..|+.|++.. |++.|
T Consensus 318 lpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~f 397 (975)
T COG5181 318 LPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQF 397 (975)
T ss_pred HHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999999996 78999
Q ss_pred HHhhccCCCCchHHHHHHHHHHHHHHHhhhChhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 000827 570 IAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEI 649 (1265)
Q Consensus 570 ~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~ 649 (1265)
..++.|.|.+. +..-+ .++..||+++..-.+.+.-.+++.. -...+.+
T Consensus 398 d~vl~pLw~g~----~~hrg------------k~l~sfLkA~g~iiplm~peYa~h~----------------tre~m~i 445 (975)
T COG5181 398 DEVLCPLWEGA----SQHRG------------KELVSFLKAMGFIIPLMSPEYACHD----------------TREHMEI 445 (975)
T ss_pred HHHHHHHHHHH----HhcCC------------chHHHHHHHhccccccCChHhhhhh----------------HHHHHHH
Confidence 99999988753 22222 2455555554322211111122211 1223344
Q ss_pred HHhhcCCCChhhHH--HHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhhHH
Q 000827 650 IEHGLNDENQKVRT--ITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTK 727 (1265)
Q Consensus 650 l~~~L~De~~~VR~--~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~ 727 (1265)
+...+..++.+.+. ..+..+|.-.+...|. ..++++.+.+|..+|..|... .......++-...-.......+
T Consensus 446 v~ref~spdeemkk~~l~v~~~C~~v~~~tp~--~lr~~v~pefF~~fw~rr~A~---dr~~~k~v~~ttvilAk~~g~~ 520 (975)
T COG5181 446 VFREFKSPDEEMKKDLLVVERICDKVGTDTPW--KLRDQVSPEFFSPFWRRRSAG---DRRSYKQVVLTTVILAKMGGDP 520 (975)
T ss_pred HHHHhCCchhhcchhHHHHHHHHhccCCCCHH--HHHHhhcHHhhchHHHhhhcc---cccccceeehhHHHHHHHcCCh
Confidence 44444443333222 2222222222222222 346788999998888765210 0000000000000000011234
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC--
Q 000827 728 EVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVG-- 805 (1265)
Q Consensus 728 ~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g-- 805 (1265)
.+++.++..++++.+.+|++...+...+++..|. ..+.+.+...+++.++..+++++.. .+.++.|++.+...++
T Consensus 521 ~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~--~~~dErleerl~d~il~Afqeq~~t-~~~il~~f~tv~vsl~~r 597 (975)
T COG5181 521 RVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGR--LGFDERLEERLYDSILNAFQEQDTT-VGLILPCFSTVLVSLEFR 597 (975)
T ss_pred HHHHHHHhhccCCcchhhhhhhHHHHHHHHhccc--ccccHHHHHHHHHHHHHHHHhcccc-ccEEEecccceeeehhhc
Confidence 4677888899999999999999999888876653 1234556667777777776665432 2234455544333332
Q ss_pred ----hhhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHH-hhhcccchHHHHHHHHHHHHH
Q 000827 806 ----VADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYA-FQEQTSDDANVMLNGFGAVVN 880 (1265)
Q Consensus 806 ----~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~-l~e~~~ed~~~al~aL~~I~~ 880 (1265)
.+.+++.++..|+.+.+.+|..+++++..++..+..|.+...+.. +..+|+. +++.++++...++.|+.+|.+
T Consensus 598 ~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~k--lg~iLyE~lge~ypEvLgsil~Ai~~I~s 675 (975)
T COG5181 598 GKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAK--LGNILYENLGEDYPEVLGSILKAICSIYS 675 (975)
T ss_pred cCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHH--HhHHHHHhcCcccHHHHHHHHHHHHHHhh
Confidence 246889999999999999999999999999988887764433222 2335554 466777888899999999999
Q ss_pred Hhc-hhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH----------HHhhcchHHHHHHHHHHHHHhhCCCCHH
Q 000827 881 SLG-QRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAV----------VMKQCHEEQLMGHLGVVLYEYLGEEYPE 949 (1265)
Q Consensus 881 ~lg-~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~----------~l~~~~~~~ll~~L~~~L~~~L~d~~~~ 949 (1265)
..+ ..++|.+.+|+|.|++.|+++|.+|..+.+.++|.|+. ||+.||+
T Consensus 676 v~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfe--------------------- 734 (975)
T COG5181 676 VHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFE--------------------- 734 (975)
T ss_pred hhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHH---------------------
Confidence 988 46899999999999999999999999999999999984 6666663
Q ss_pred HHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhh
Q 000827 950 VLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKA 1029 (1265)
Q Consensus 950 V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~ 1029 (1265)
|++.|++.++++|.+|..+||.|++..|.. ++|..|+++|+.
T Consensus 735 -------------------------------Lvd~Lks~nKeiRR~A~~tfG~Is~aiGPq-------dvL~~LlnnLkv 776 (975)
T COG5181 735 -------------------------------LVDSLKSWNKEIRRNATETFGCISRAIGPQ-------DVLDILLNNLKV 776 (975)
T ss_pred -------------------------------HHHHHHHhhHHHHHhhhhhhhhHHhhcCHH-------HHHHHHHhcchH
Confidence 788888999999999999999999995543 789999999999
Q ss_pred chHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCC------cccHHH----HHhh---
Q 000827 1030 HKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP------FTVLPA----LMNE--- 1096 (1265)
Q Consensus 1030 ~~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp------~~vlPa----L~~~--- 1096 (1265)
++++.|.|+..+++.+|+.|||+.|+|+||+.++.++.+++++++.|++++|+++|. |.++|. |+++
T Consensus 777 qeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~v 856 (975)
T COG5181 777 QERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPV 856 (975)
T ss_pred HHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchH
Confidence 999999999999999999999999999999999999999999999999999999996 567774 4433
Q ss_pred -------------cCCCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHHHHHHHHHHHhcccCC
Q 000827 1097 -------------YRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGL 1163 (1265)
Q Consensus 1097 -------------~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~g~ 1163 (1265)
++.+.....++++|.|+.+|++|-+.+++.+..+...++.. .-++|++
T Consensus 857 hRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~-----------------~~~lg~g-- 917 (975)
T COG5181 857 HRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESF-----------------ATVLGSG-- 917 (975)
T ss_pred HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHH-----------------HHHhccH--
Confidence 23445567788999999999999999999999998887765 3345665
Q ss_pred CchhHHHHHHHhhhhhcccCChHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 000827 1164 GCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYC 1211 (1265)
Q Consensus 1164 ~~e~~~~~~ln~l~~~i~~~s~~v~~~~~~a~~~~~~~~g~~~~~~~~ 1211 (1265)
.+++|+|+++||||..||.++|..|+.+++.-.+..++.|.
T Consensus 918 -------~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~~~damvp~yp 958 (975)
T COG5181 918 -------AMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFDSDAMVPCYP 958 (975)
T ss_pred -------HHHHHHHHhccCchHHHHHHHHHHHhhhhhccccccccccc
Confidence 78999999999999999999999999999877666555543
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-36 Score=365.35 Aligned_cols=734 Identities=18% Similarity=0.230 Sum_probs=486.7
Q ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Q 000827 456 KIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKIL 535 (1265)
Q Consensus 456 ~i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll 535 (1265)
.+..|+-.+-+.|..+|+.|-+++..+.+. .+++..+. .+....-+++.|+.+.-.+.+++.
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~---~~~l~~L~-~i~~~~~~p~~Rq~aaVl~Rkl~~-------------- 66 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKT---EPLLPALA-HILATSADPQVRQLAAVLLRKLLT-------------- 66 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcc---cchHHHHH-HHHhcCCChHHHHHHHHHHHHHHH--------------
Confidence 455667778888888999999999876654 34333333 333444567777755333333222
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhC---hhhHHHHHHHHH
Q 000827 536 VVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALG---IPALLPFLKAVC 612 (1265)
Q Consensus 536 ~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg---~~~Llp~L~~~l 612 (1265)
-+++.|. ..+|.. +.++|... ...++.+.||+..+++++.+|+... ||+|++||.+..
T Consensus 67 -~~w~~l~---~e~~~s---iks~lL~~------------~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~ 127 (1075)
T KOG2171|consen 67 -KHWSRLS---AEVQQS---IKSSLLEI------------IQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQST 127 (1075)
T ss_pred -HHhhcCC---HHHHHH---HHHHHHHH------------HHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHh
Confidence 2333222 223322 11222211 1234566799999999999999853 999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhC--ccchhhhHHhHHH
Q 000827 613 QSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAA--PYGIESFDSVLKP 690 (1265)
Q Consensus 613 ~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~--p~~~~~~~~iL~~ 690 (1265)
+|++ ...|+.|+.+|..+.+..|..+.||+..+++++.+++.|++..||.+|++|++.++.... +...+.|..+||.
T Consensus 128 ~S~~-~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~ 206 (1075)
T KOG2171|consen 128 KSPN-PSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPS 206 (1075)
T ss_pred cCCC-cchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHH
Confidence 9987 789999999999999999999999999999999999999877799999999999999986 3445667888888
Q ss_pred HHHhhhc----cchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhhccCCcch
Q 000827 691 LWKGIRS----HRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQS--PDEEMKKIVLKVVKQCVSTEGVEAD 764 (1265)
Q Consensus 691 L~~~l~~----~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~--~de~~r~~al~~l~~~~~~~~~~~~ 764 (1265)
++..+.. .+..+....++++..+.... +-+.+.++..|+...+.-.++ -++.+|..+++++..+.+.. +.
T Consensus 207 ~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~-pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A---p~ 282 (1075)
T KOG2171|consen 207 LLNVLQEVIQDGDDDAAKSALEALIELLESE-PKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA---PA 282 (1075)
T ss_pred HHHHhHhhhhccchHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh---HH
Confidence 8776653 23333344444443333222 223445566677776665544 47888999999998777652 21
Q ss_pred hhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChh-hhHHHHHHHhc-CCChhHHHHHHHHHHHHHHhhCCC
Q 000827 765 YIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVA-DIVGRIVEDLK-DESEPYRRMVMETIEKVVANLGAS 842 (1265)
Q Consensus 765 ~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~-~il~~i~~~l~-d~~~~vR~~a~~~l~~ii~~lg~~ 842 (1265)
-. ...+.+. ..++..+..+......+ +... .+.+. |+...-...+.+++.++...+|..
T Consensus 283 ~~--k~~~~~~---------------~~lv~~~l~~mte~~~D~ew~~--~d~~ded~~~~~~~~A~~~lDrlA~~L~g~ 343 (1075)
T KOG2171|consen 283 MC--KKLALLG---------------HTLVPVLLAMMTEEEDDDEWSN--EDDLDEDDEETPYRAAEQALDRLALHLGGK 343 (1075)
T ss_pred Hh--hhchhhh---------------ccHHHHHHHhcCCcccchhhcc--ccccccccccCcHHHHHHHHHHHHhcCChh
Confidence 11 0111111 11111111111111000 0000 00111 121223346677888888888764
Q ss_pred CchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000827 843 DIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVV 922 (1265)
Q Consensus 843 ~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~ 922 (1265)
.+.+++++.+-..++......|.+++.||+.++++|+..+.+.||+|++.+++.|+|+|++||.+|+.+||+++..
T Consensus 344 ----~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~std 419 (1075)
T KOG2171|consen 344 ----QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTD 419 (1075)
T ss_pred ----hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhh
Confidence 3344555555445554444557899999999999999999999999999999999999999999999999999987
Q ss_pred HhhcchHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHH-HHHHHhcCCCHHHHHHHHHHH
Q 000827 923 MKQCHEEQLMGHLGVVLYEYLGE-EYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLP-RLTPILKNRHEKVQENCIDLV 1000 (1265)
Q Consensus 923 l~~~~~~~ll~~L~~~L~~~L~d-~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp-~Ll~~L~~~~~~Vre~ai~~i 1000 (1265)
+.+......=..+.+.|...+++ ..++|..+++.|+-++.+.+-.+.+.||++.||. .+..++.++.+.||+.++.+|
T Consensus 420 l~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaI 499 (1075)
T KOG2171|consen 420 LQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAI 499 (1075)
T ss_pred hcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 76543222222333444444444 4579999999999999999988899999999999 555555667789999999999
Q ss_pred HHHHhh-CCCCcChH-HHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHhhCcHHHHH-------HHHHh---hcccch
Q 000827 1001 GRIADR-GAEFVPAR-EWMRICFELLEMLK-AHKKGIRRATVNTFGYIAKAIGPQDVLA-------TLLNN---LKVQER 1067 (1265)
Q Consensus 1001 g~Ia~~-~~~~~~~~-e~~~il~~LL~~Lk-~~~~~iR~~a~~tlg~Ia~~iGp~~vlp-------~Ll~~---L~~~e~ 1067 (1265)
|++|.. +..|++|+ .+|+.+..+|.+-+ ++.+.+|..+++|++.|+.++|.+.+.| .++.. ....+.
T Consensus 500 asvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd 579 (1075)
T KOG2171|consen 500 ASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDD 579 (1075)
T ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhcc
Confidence 999998 77899998 44555555554444 3468899999999999999999765443 22211 112222
Q ss_pred hhHHHHHHHHHHHHhhcCC----c--ccHHHHHhhcC----------------------------CC-------------
Q 000827 1068 QNRVCTTVAIAIVAETCSP----F--TVLPALMNEYR----------------------------VP------------- 1100 (1265)
Q Consensus 1068 ~~R~~~~~ai~~l~e~~gp----~--~vlPaL~~~~~----------------------------~~------------- 1100 (1265)
-+|.+..-+++.+++..|+ | .|+|.|+...+ ..
T Consensus 580 ~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK 659 (1075)
T KOG2171|consen 580 PLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEK 659 (1075)
T ss_pred ccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHH
Confidence 2344444444444444443 1 23333332100 00
Q ss_pred --------------------------------------------------------------------------------
Q 000827 1101 -------------------------------------------------------------------------------- 1100 (1265)
Q Consensus 1101 -------------------------------------------------------------------------------- 1100 (1265)
T Consensus 660 ~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~ 739 (1075)
T KOG2171|consen 660 ETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIK 739 (1075)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------c----------------------------------------------------------------------hhH
Q 000827 1101 ------E----------------------------------------------------------------------LNV 1104 (1265)
Q Consensus 1101 ------~----------------------------------------------------------------------~~v 1104 (1265)
+ .+.
T Consensus 740 ~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~l 819 (1075)
T KOG2171|consen 740 ALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYL 819 (1075)
T ss_pred HhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHH
Confidence 0 011
Q ss_pred HHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhcccCC
Q 000827 1105 QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETS 1184 (1265)
Q Consensus 1105 q~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~~~s 1184 (1265)
.+.+.+.+..++...+..+-+++..+.|++...+.....+-||.|..++..++.||. .++-..+.+++.+++..+-+.+
T Consensus 820 l~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~-~a~~~~~~~~~p~~~~~~~d~~ 898 (1075)
T KOG2171|consen 820 LDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCG-EASAKYKERFLPLVLEALQDSD 898 (1075)
T ss_pred HHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHcCCCC
Confidence 223344444445555555666778889999999999887779999999999998886 3444566678888888888999
Q ss_pred hHHHHHHHHHHHHHHHHhCHH------HHHHHHHHhhcch-hhHHHH--HH-------HHH--hhhhhccccCcceecc-
Q 000827 1185 PHVINAVMEAIEGMRVALGAA------VVLNYCLQGLFHP-ARKVRE--VY-------WKI--YNSLYIGAQDALVAAY- 1245 (1265)
Q Consensus 1185 ~~v~~~~~~a~~~~~~~~g~~------~~~~~~~~gl~~~-a~~vr~--~~-------~~~--~~~~~~~~~~~~~~~~- 1245 (1265)
|+||+++..+++.+..-.|.. ..+..+.+.++.| ++.-++ +| .|+ +|..-+. -|+++|+|
T Consensus 899 pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~-vdqvl~~~l 977 (1075)
T KOG2171|consen 899 PEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIP-VDQVLPAWL 977 (1075)
T ss_pred HHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCc-HHHHHHHHH
Confidence 999999999999999877754 2355555666555 341221 22 244 5555666 89999988
Q ss_pred ---CCCCccCCCcc
Q 000827 1246 ---PTLADEQSNVY 1256 (1265)
Q Consensus 1246 ---p~~~~~~~~~~ 1256 (1265)
|..+|-+++.+
T Consensus 978 ~~LPl~~D~eEa~~ 991 (1075)
T KOG2171|consen 978 SWLPLKEDKEEAVP 991 (1075)
T ss_pred HhCCCccchhhhhh
Confidence 88888776544
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-32 Score=336.54 Aligned_cols=668 Identities=19% Similarity=0.250 Sum_probs=466.9
Q ss_pred ChhhHHhHHhhcCcCCCCCCChhHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHHhhcCC--hhhHHHHhHH----hcC
Q 000827 428 KPEDYQYFGALLNEDEEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGA--GPLFNRILPL----LMQ 501 (1265)
Q Consensus 428 ~~~d~~~f~~l~~~~~~~~l~~~~~~~~~i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~--~~~~~~iLp~----l~~ 501 (1265)
..++.+.|+.+++ .++..+-..+++|+...-..++..|.+++...+. .+.+..++.+ ..+
T Consensus 193 ~~~~~~~~~~llP--------------~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n 258 (1075)
T KOG2171|consen 193 NKSEVDKFRDLLP--------------SLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKN 258 (1075)
T ss_pred chHHHHHHHHHhH--------------HHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc
Confidence 4667888888876 3555666668999988889999999999887754 3445555544 456
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcchhhh---hhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCC
Q 000827 502 PTLEDQERHLLVKVIDRVLYKLDELVR---PYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDID 578 (1265)
Q Consensus 502 ~~led~~R~~~v~vi~~l~~~l~~~v~---p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~ 578 (1265)
..+++..||.++.+|..++...+..+| +|.+.|++++..+++|.+.. .++ .. ..+++
T Consensus 259 ~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D--~ew-------~~-----------~d~~d 318 (1075)
T KOG2171|consen 259 KELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD--DEW-------SN-----------EDDLD 318 (1075)
T ss_pred ccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccc--hhh-------cc-----------ccccc
Confidence 778999999999999998888766664 57888999988888876433 111 00 12233
Q ss_pred Cch-HHHHHHHHHHHHHHHhhhC----hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhh
Q 000827 579 NID-EYVRNTTARAFSVVASALG----IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHG 653 (1265)
Q Consensus 579 ~~d-~~vR~~aa~~l~~lA~~lg----~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~ 653 (1265)
+++ +..-+.+.++++.+|.++| .|.+++++.++++|.+ |+.||+++++|+.+++..+..|.++|++|++++..+
T Consensus 319 ed~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~-w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~ 397 (1075)
T KOG2171|consen 319 EDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTE-WKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNG 397 (1075)
T ss_pred cccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Confidence 333 2345568899999999998 7888899999999987 999999999999655533337889999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHHHhCccchhhhHHhHH-HHHHhhhccch-HHHHHHHHHHhhhhhhhhHhhhhhhHHHHHH
Q 000827 654 LNDENQKVRTITALSLAALAEAAAPYGIESFDSVLK-PLWKGIRSHRG-KVLAAFLKAIGFIIPLMDALYASYYTKEVMF 731 (1265)
Q Consensus 654 L~De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~-~L~~~l~~~~~-~~la~~l~a~~~lip~~~~~~~~~~~~~im~ 731 (1265)
++|+||+||.+||+|+|+++..+.|...+++.+.++ .|...+.+..+ ++.+....++-.+...+.......|++.+|.
T Consensus 398 l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 398 LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLME 477 (1075)
T ss_pred cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999999999999999999999999998888876666 45555544332 3222222222111122223334456666888
Q ss_pred -HHHHHhCCCCHHHHHHHHHHHHHhhhccCC-cchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhh
Q 000827 732 -ILIREFQSPDEEMKKIVLKVVKQCVSTEGV-EADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADI 809 (1265)
Q Consensus 732 -~L~~~l~~~de~~r~~al~~l~~~~~~~~~-~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~i 809 (1265)
.+....++....++..++.++++++.+.+. +..| ++.+||.+..-+.+....+.+...+..++|...++.++|.+.+
T Consensus 478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY-~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F 556 (1075)
T KOG2171|consen 478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPY-FDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKF 556 (1075)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhH-HHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhh
Confidence 555566778888999999999998876431 2334 3677876655442222222233334568999999999997532
Q ss_pred -------HHHHHHH---hcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHH--------------------
Q 000827 810 -------VGRIVED---LKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYA-------------------- 859 (1265)
Q Consensus 810 -------l~~i~~~---l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~-------------------- 859 (1265)
+..+... ..+...+.|...+..+.+++..+|.+- ....+.+++.++..
T Consensus 557 ~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F--~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~ 634 (1075)
T KOG2171|consen 557 LPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDF--APFLPVVMPPLLKTARLDPDVALSDEEDEEEEQD 634 (1075)
T ss_pred hHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhh--HhHHHHHhHHHHHhhccCCcccCcCchhhhhccc
Confidence 2222222 234455667777777888888877653 12222333333211
Q ss_pred --------hhhc--------ccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH
Q 000827 860 --------FQEQ--------TSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLN-NKSAKVRQQAADLISRIAVV 922 (1265)
Q Consensus 860 --------l~e~--------~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~-d~~~~VR~~A~~~lg~La~~ 922 (1265)
+++. ..+++..++.+|+.++..++..|.||+.+++...+..++ +.|..||.+|+.+++.+...
T Consensus 635 ~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~ 714 (1075)
T KOG2171|consen 635 LDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTC 714 (1075)
T ss_pred cccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 0110 013467899999999999999999999999995555554 78999999999999999987
Q ss_pred Hhh-cc-----hHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHhCcccCC-ccHHhHHHHHHHHhcCC------
Q 000827 923 MKQ-CH-----EEQLMGHLGVVLYEYLG-EEYPEVLGSILGALKAIVNVIGMTKMT-PPIKDLLPRLTPILKNR------ 988 (1265)
Q Consensus 923 l~~-~~-----~~~ll~~L~~~L~~~L~-d~~~~V~~~al~aL~~lv~~~g~~~l~-p~l~~Llp~Ll~~L~~~------ 988 (1265)
... |+ -..+...+.+.++..+. +..++|...++.++.++++.+|...+. +++..++-.+...+..+
T Consensus 715 ~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~ 794 (1075)
T KOG2171|consen 715 ALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQD 794 (1075)
T ss_pred HHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 654 21 12345556666666665 557899999999999999999965443 45555555554433311
Q ss_pred -C--------------------HHHHHHHHHHHHHHHhh-CCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 000827 989 -H--------------------EKVQENCIDLVGRIADR-GAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIA 1046 (1265)
Q Consensus 989 -~--------------------~~Vre~ai~~ig~Ia~~-~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia 1046 (1265)
+ ......+.+++..+++. +++|.+.+ +.+++.+++.+..+...-|.-++.+++.++
T Consensus 795 r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f--~~~~p~iv~~l~~~~~~~r~~av~~~~d~i 872 (1075)
T KOG2171|consen 795 RQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFF--ENFLPLIVKLLKSKKTVARQWAVCIFDDLI 872 (1075)
T ss_pred hhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 0 11345566777778887 77888774 788888888888886666999999999999
Q ss_pred HhhCcH------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCC-c-----ccHHHHHhhcCCCch------hHHHHH
Q 000827 1047 KAIGPQ------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-F-----TVLPALMNEYRVPEL------NVQNGV 1108 (1265)
Q Consensus 1047 ~~iGp~------~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp-~-----~vlPaL~~~~~~~~~------~vq~~v 1108 (1265)
..+|+. .++|.++..+.+.+..+|.++++++|+++++.|. | ..+|.|...+..+.. ..-+.+
T Consensus 873 e~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa 952 (1075)
T KOG2171|consen 873 EGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENA 952 (1075)
T ss_pred HhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHH
Confidence 999985 5899999999999999999999999999999886 3 345666655554432 133467
Q ss_pred HHHHHHHHHHhchhhhhhHHhHHHHHHHH
Q 000827 1109 LKSLSFLFEYIGEMGKDYIYAVTPLLEDA 1137 (1265)
Q Consensus 1109 l~al~~l~~~ig~~~~~yi~~i~PlL~~~ 1137 (1265)
+.|++.++.+.... .. +..++|.+...
T Consensus 953 ~gaiaki~~~~~~~-i~-vdqvl~~~l~~ 979 (1075)
T KOG2171|consen 953 IGAIAKILLFNPNR-IP-VDQVLPAWLSW 979 (1075)
T ss_pred HHHHHHHHHhCCcc-Cc-HHHHHHHHHHh
Confidence 78888887654332 22 56666665554
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-33 Score=319.47 Aligned_cols=644 Identities=17% Similarity=0.171 Sum_probs=452.5
Q ss_pred hhHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhhh
Q 000827 449 PDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVR 528 (1265)
Q Consensus 449 ~~~~~~~~i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v~ 528 (1265)
.+++--.++.++|..-.+.++.+|+.+...+-+.-. -|-|+.+|-++.....+
T Consensus 7 p~e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~----~pdfnnYL~~IL~~~~~----------------------- 59 (885)
T KOG2023|consen 7 PDEQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL----FPDFNNYLIYILIRAKS----------------------- 59 (885)
T ss_pred ccHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc----ccchhceeeEEEecccc-----------------------
Confidence 344555678888888888899999998877766422 35677766665544222
Q ss_pred hhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhc-------hHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhC-
Q 000827 529 PYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAG-------LATMIAAMRPDIDNIDEYVRNTTARAFSVVASALG- 600 (1265)
Q Consensus 529 p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~G-------l~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg- 600 (1265)
++..+|..|..+|+|-.+..+ +..+.+.+...+.++++.+|.+++.+|.++++..|
T Consensus 60 ----------------~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~ 123 (885)
T KOG2023|consen 60 ----------------EDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGL 123 (885)
T ss_pred ----------------cchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeeccccc
Confidence 223356677777776555532 34456777788888899999999999999998866
Q ss_pred --hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCC-----cchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 000827 601 --IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCA-----VLPHLRSLVEIIEHGLNDENQKVRTITALSLAALA 673 (1265)
Q Consensus 601 --~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~-----l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~la 673 (1265)
||+++|.|.+++.+++ ...-+.|+.+|++||+..... ....++-++|.+.++.+++++++|..|+.|+.++.
T Consensus 124 ~~wpelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 124 QHWPELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred ccchhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence 9999999999999876 567899999999999986542 23578889999999999999999999999999987
Q ss_pred HHhCccchhhhHHhHHHHHHhhhccchHHHHHHHHHHh--------hhhhhhhHhhhhhhHHHHHHHHHHHhCCCCHHHH
Q 000827 674 EAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIG--------FIIPLMDALYASYYTKEVMFILIREFQSPDEEMK 745 (1265)
Q Consensus 674 e~~~p~~~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~--------~lip~~~~~~~~~~~~~im~~L~~~l~~~de~~r 745 (1265)
-.-.....-+.+.+++.+|....|....+....+.++. .++|+|+ .|++.++...++.|+++.
T Consensus 203 ~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~---------~IveyML~~tqd~dE~VA 273 (885)
T KOG2023|consen 203 IIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLD---------NIVEYMLQRTQDVDENVA 273 (885)
T ss_pred ecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchH---------HHHHHHHHHccCcchhHH
Confidence 55444444567889999999888776544444444433 4455554 478999999999999987
Q ss_pred HHHHHHHHHhhhccC---CcchhhhhcchHHHHHHHHHHhhh--------h-----hH-HHHHHHHHHHHHHHHhcChhh
Q 000827 746 KIVLKVVKQCVSTEG---VEADYIRSDILPEFFRNFWVRRMA--------L-----DR-RNYKQLVETTVEIANKVGVAD 808 (1265)
Q Consensus 746 ~~al~~l~~~~~~~~---~~~~~l~~~ilp~l~~~~~~~~~~--------~-----d~-~~~~~ll~~~~~la~~~g~~~ 808 (1265)
-.+.+.+-.++...- .-..|+ ++++|.++.++.+.... . |+ +.++.=.. -.+..|..+
T Consensus 274 LEACEFwla~aeqpi~~~~L~p~l-~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfh----ksk~~~~~~ 348 (885)
T KOG2023|consen 274 LEACEFWLALAEQPICKEVLQPYL-DKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFH----KSKEHGNGE 348 (885)
T ss_pred HHHHHHHHHHhcCcCcHHHHHHHH-HHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhh----hchhccCcc
Confidence 777777776665420 001222 35566665554221100 0 00 00000000 000000000
Q ss_pred hH------HH-HHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhh-cccc---hHHHHHHHHHH
Q 000827 809 IV------GR-IVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQE-QTSD---DANVMLNGFGA 877 (1265)
Q Consensus 809 il------~~-i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e-~~~e---d~~~al~aL~~ 877 (1265)
.- +. .-+.-....+.+|+..+.++.-+....|+ .+++.+++.+++ ..++ .+++.+.|||+
T Consensus 349 ~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~---------elL~~l~PlLk~~L~~~~W~vrEagvLAlGA 419 (885)
T KOG2023|consen 349 DADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD---------ELLPILLPLLKEHLSSEEWKVREAGVLALGA 419 (885)
T ss_pred ccccccccccccccccccccccHhhccHHHHHHHHHhhHH---------HHHHHHHHHHHHHcCcchhhhhhhhHHHHHH
Confidence 00 00 00000011367888888777766666654 344555555544 2333 46899999999
Q ss_pred HHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 000827 878 VVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGA 957 (1265)
Q Consensus 878 I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~a 957 (1265)
|+++|...|-||||.++|.++.+|.|+.+-||..+||+++|++.|+-.....+++..++.-|+..+-|.+..|++++|.|
T Consensus 420 IAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsA 499 (885)
T KOG2023|consen 420 IAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSA 499 (885)
T ss_pred HHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987655556777777777777789999999999999
Q ss_pred HHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHH-HHHH---HHHhhchHH
Q 000827 958 LKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRIC-FELL---EMLKAHKKG 1033 (1265)
Q Consensus 958 L~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il-~~LL---~~Lk~~~~~ 1033 (1265)
+..+-+..|. .+.||+..|+..|...++....+--.-..++||.+|.+-|+.++...++.++ +.|+ +.|++++++
T Consensus 500 fAtleE~A~~-eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKd 578 (885)
T KOG2023|consen 500 FATLEEEAGE-ELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKD 578 (885)
T ss_pred HHHHHHhccc-hhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccch
Confidence 9999999875 5789999999999998887654444567899999999866555555455554 4565 467777665
Q ss_pred HHHHHHHHHHHHHHhhCcH------HHHHHHHH-------h-hc--------ccchhhHHHHHHHHHHHHhhcCCc----
Q 000827 1034 IRRATVNTFGYIAKAIGPQ------DVLATLLN-------N-LK--------VQERQNRVCTTVAIAIVAETCSPF---- 1087 (1265)
Q Consensus 1034 iR~~a~~tlg~Ia~~iGp~------~vlp~Ll~-------~-L~--------~~e~~~R~~~~~ai~~l~e~~gp~---- 1087 (1265)
+ .-..+||..|+.++|.. .|....++ . .+ .+++..-+|++-.++=+++..|..
T Consensus 579 L-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~L 657 (885)
T KOG2023|consen 579 L-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPL 657 (885)
T ss_pred H-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHH
Confidence 5 55689999999998742 12211111 1 11 223333456666666677766641
Q ss_pred ----ccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHHHHHHHHHHHhccc
Q 000827 1088 ----TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVA 1161 (1265)
Q Consensus 1088 ----~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~ 1161 (1265)
.++--|+....++-..||......|+.+..++.+....++..++|.|-.-+.-....+-..|+++++.+|+..+
T Consensus 658 va~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g 735 (885)
T KOG2023|consen 658 VAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMG 735 (885)
T ss_pred hhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhc
Confidence 34456667777777789999999999999888888888999999988755555556778899999999987554
No 8
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=3.5e-30 Score=303.74 Aligned_cols=656 Identities=19% Similarity=0.262 Sum_probs=452.7
Q ss_pred CCCCCChhhHHh-HHh---hcCcCCCCCCChhHHHHHHHHHHHHhc---cCCCHhHHHHHHHHHHHHHhhcCChhhHHHH
Q 000827 423 GLPFMKPEDYQY-FGA---LLNEDEEEELSPDEQKERKIMKLLLKV---KNGTPPQRKTALRQLTDKAREFGAGPLFNRI 495 (1265)
Q Consensus 423 ~l~~~~~~d~~~-f~~---l~~~~~~~~l~~~~~~~~~i~~lll~l---kn~~~~vR~~A~r~L~~~A~~~G~~~~~~~i 495 (1265)
.+.+|.+.|+|| ||. |+.+.+.+.+..|...++++.++++++ +||+ |.+.|+|||+-+++..+. .-+..+
T Consensus 10 LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngE--VQnlAVKClg~lvsKvke-~~le~~ 86 (1233)
T KOG1824|consen 10 LLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGE--VQNLAVKCLGPLVSKVKE-DQLETI 86 (1233)
T ss_pred HHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcH--HHHHHHHHHHHHHhhchH-HHHHHH
Confidence 478999999999 887 889999999999999999999999996 5555 779999999988887774 344555
Q ss_pred hHHhcCCCCCHHHHHHHHH--HHHHHHhhcch---------hhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh
Q 000827 496 LPLLMQPTLEDQERHLLVK--VIDRVLYKLDE---------LVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAA 564 (1265)
Q Consensus 496 Lp~l~~~~led~~R~~~v~--vi~~l~~~l~~---------~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~ 564 (1265)
..-||...++..+.+.-+. -+..+...+++ .+..+++++...+.. ..+...++.+..++|..+..+.
T Consensus 87 ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~--qe~~sai~~e~lDil~d~lsr~ 164 (1233)
T KOG1824|consen 87 VENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISK--QEDVSAIKCEVLDILADVLSRF 164 (1233)
T ss_pred HHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhh--cccchhhHHHHHHHHHHHHHhh
Confidence 5555555555444333222 22222222222 233344444433322 1334459999999999998887
Q ss_pred ch------HHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhC---hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHh
Q 000827 565 GL------ATMIAAMRPDIDNIDEYVRNTTARAFSVVASALG---IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILI 635 (1265)
Q Consensus 565 Gl------~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg---~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~ 635 (1265)
|- ..+...+.+.+..+...||+.+..+++.+|..++ +.+++..|...+....++..-++.+++++.||...
T Consensus 165 g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~a 244 (1233)
T KOG1824|consen 165 GTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQA 244 (1233)
T ss_pred cccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHh
Confidence 62 4566788899999999999999999999999977 67888888777665555778889999999999999
Q ss_pred CCCcchhHHHHHHHHHhhc---CCCChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhccchHHHHHHHHHHhh
Q 000827 636 GCAVLPHLRSLVEIIEHGL---NDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGF 712 (1265)
Q Consensus 636 g~~l~p~L~~ll~~l~~~L---~De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~~ 712 (1265)
|..+..|++.++|.+.+.+ +.++.+.|..+.++++.+...++.+...+...|+..+.+.+.-
T Consensus 245 g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisY--------------- 309 (1233)
T KOG1824|consen 245 GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISY--------------- 309 (1233)
T ss_pred cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhcc---------------
Confidence 9999999999999999999 5678899999999999999998776666666666666655531
Q ss_pred hhhhhhHhhhhhhH--HHHHHHH--------HHHhCCC---CHHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHHHHH
Q 000827 713 IIPLMDALYASYYT--KEVMFIL--------IREFQSP---DEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFW 779 (1265)
Q Consensus 713 lip~~~~~~~~~~~--~~im~~L--------~~~l~~~---de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~ 779 (1265)
+|+|. |.+ ++.-..+ -+++.|+ .+.+|+.+++++..++.+...--..++..+-|.++.+|.
T Consensus 310 -----DPNy~-yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~Rfk 383 (1233)
T KOG1824|consen 310 -----DPNYN-YDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFK 383 (1233)
T ss_pred -----CCCCC-CCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHH
Confidence 11110 000 0000000 0112111 234677777887777766411111125677888888885
Q ss_pred HHhhhhhHHHHH-HHHHHHHHHHHhcC---------------------------hhhhHHHHHHHhcCCChhHHHHHHHH
Q 000827 780 VRRMALDRRNYK-QLVETTVEIANKVG---------------------------VADIVGRIVEDLKDESEPYRRMVMET 831 (1265)
Q Consensus 780 ~~~~~~d~~~~~-~ll~~~~~la~~~g---------------------------~~~il~~i~~~l~d~~~~vR~~a~~~ 831 (1265)
.|. + +++ .++++...+-+.++ ...++..+...+++++.+.|+.++..
T Consensus 384 ERE-E----nVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~l 458 (1233)
T KOG1824|consen 384 ERE-E----NVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLL 458 (1233)
T ss_pred HHh-h----hHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHH
Confidence 542 1 222 12233333222221 12467778888888899999999999
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc----hhhhchHHHHHHHHHHHhcCCCHH
Q 000827 832 IEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLG----QRVKPYLPQICGTIKWRLNNKSAK 907 (1265)
Q Consensus 832 l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg----~~~~p~Lp~ilp~Ll~~L~d~~~~ 907 (1265)
+..++..++++. ..+...+++++.+.|.+.++.+ ...+.+|+.+...+. ..|.||++.+.|.+..+..|+.++
T Consensus 459 L~eli~~lp~~l--~~~~~slvpgI~~~l~DkSsss-~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyK 535 (1233)
T KOG1824|consen 459 LTELINVLPGAL--AQHIPSLVPGIIYSLNDKSSSS-NLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYK 535 (1233)
T ss_pred HHHHHHhCcchh--hhcccccchhhhhhcCCccchH-HHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHh
Confidence 999999987764 2345578899999997744332 345566666655544 579999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc------hHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHH
Q 000827 908 VRQQAADLISRIAVVMKQCH------EEQLMGHLGVVLYEYL--GEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLP 979 (1265)
Q Consensus 908 VR~~A~~~lg~La~~l~~~~------~~~ll~~L~~~L~~~L--~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp 979 (1265)
|-..|.-+++++++++++.. ...+...+....+..| .|.+.+|++.++.+++.++..+| +.+...++.+++
T Consensus 536 isaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg-D~l~~eL~~~L~ 614 (1233)
T KOG1824|consen 536 ISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG-DFLGNELPRTLP 614 (1233)
T ss_pred hhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHH
Confidence 99999999999999997622 2345666666666655 47789999999999999999998 566777788888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCc-ChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCc---HHHH
Q 000827 980 RLTPILKNRHEKVQENCIDLVGRIADRGAEFV-PAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGP---QDVL 1055 (1265)
Q Consensus 980 ~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~-~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp---~~vl 1055 (1265)
.+++.|++ +-.|.+|+.++..|+.++-.+- .+. +..++.++...++...+.+|..+..++-.+.+..|. ...+
T Consensus 615 il~eRl~n--EiTRl~AvkAlt~Ia~S~l~i~l~~~-l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~ 691 (1233)
T KOG1824|consen 615 ILLERLGN--EITRLTAVKALTLIAMSPLDIDLSPV-LTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL 691 (1233)
T ss_pred HHHHHHhc--hhHHHHHHHHHHHHHhccceeehhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 88888775 5689999999999998744432 222 567888888888888999999999999999887643 2222
Q ss_pred HHHHHhhc--ccchhhHHHHHHHHHHHHhhc-C-C-------cccHHHHHhhcCCCchhHHHHHHHHHHHHHHHh
Q 000827 1056 ATLLNNLK--VQERQNRVCTTVAIAIVAETC-S-P-------FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYI 1119 (1265)
Q Consensus 1056 p~Ll~~L~--~~e~~~R~~~~~ai~~l~e~~-g-p-------~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~i 1119 (1265)
..++.++. ..+...| .+..|++++.-.. + | ..+++.++..++.| -.|-+++.++-.+|+.+
T Consensus 692 e~vL~el~~Lisesdlh-vt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp--llqg~al~~~l~~f~al 763 (1233)
T KOG1824|consen 692 EAVLVELPPLISESDLH-VTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSP--LLQGGALSALLLFFQAL 763 (1233)
T ss_pred HHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCc--cccchHHHHHHHHHHHH
Confidence 22222211 0111122 1222333322111 0 1 35788888888887 35555665555555554
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-29 Score=288.23 Aligned_cols=558 Identities=20% Similarity=0.236 Sum_probs=377.4
Q ss_pred HHHHHHHHHHhccCCCHhHHHHHHHHHHHHHhhcCC--hhhHHHHhHHhcC--CCCCHHHHHHHHHHHHHHHhhcchhhh
Q 000827 453 KERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGA--GPLFNRILPLLMQ--PTLEDQERHLLVKVIDRVLYKLDELVR 528 (1265)
Q Consensus 453 ~~~~i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~--~~~~~~iLp~l~~--~~led~~R~~~v~vi~~l~~~l~~~v~ 528 (1265)
...+|-+++.-++|..+.+|..|+.|+-+..-.-.. -.-++.+|..+.. +..+++-|......+.-++.--++-+.
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ 251 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV 251 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc
Confidence 456788888889999999999999998554221110 0112333333321 223555555444444445555566667
Q ss_pred hhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh--------chHHHHHhh-------------cc------------
Q 000827 529 PYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAA--------GLATMIAAM-------------RP------------ 575 (1265)
Q Consensus 529 p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~--------Gl~~~~~~L-------------~~------------ 575 (1265)
||++.|+..+...-.|.|..|-.+|.+-...++++- .+..++..| ..
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDre 331 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDRE 331 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchh
Confidence 999999999999999999999999998888877652 112222111 11
Q ss_pred --------------------C---C----CCc----hHHHHHHHHHHHHHHHhhhC---hhhHHHHHHHHHcCCchhHHH
Q 000827 576 --------------------D---I----DNI----DEYVRNTTARAFSVVASALG---IPALLPFLKAVCQSKKSWQAR 621 (1265)
Q Consensus 576 --------------------~---l----~~~----d~~vR~~aa~~l~~lA~~lg---~~~Llp~L~~~l~s~~s~~~R 621 (1265)
+ . |++ +...|++.|.+++++|..+| ++.++|+|++.+.++. |..|
T Consensus 332 eDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~-W~vr 410 (885)
T KOG2023|consen 332 EDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEE-WKVR 410 (885)
T ss_pred hhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcch-hhhh
Confidence 0 0 001 12389999999999999988 8999999999999976 9999
Q ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCcc-chhhhHHhHHHHHHhhhccch
Q 000827 622 HTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPY-GIESFDSVLKPLWKGIRSHRG 700 (1265)
Q Consensus 622 ~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~-~~~~~~~iL~~L~~~l~~~~~ 700 (1265)
++|+.++|.|++..-..+.|||+.++|.+...|.|..+-||..+||+|++++.++-.. ..++|.++|..|++.+.|...
T Consensus 411 EagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK 490 (885)
T KOG2023|consen 411 EAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNK 490 (885)
T ss_pred hhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccH
Confidence 9999999955543223899999999999999999999999999999999999998643 347889999999999999887
Q ss_pred HHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccC---CcchhhhhcchHHHHHH
Q 000827 701 KVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEG---VEADYIRSDILPEFFRN 777 (1265)
Q Consensus 701 ~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~---~~~~~l~~~ilp~l~~~ 777 (1265)
++..+.+.++..+..--.++.- .|+..|+..|..+|+.=...--.....+++.++...| ..+.|+ +-++|+++..
T Consensus 491 ~VQEAAcsAfAtleE~A~~eLV-p~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yi-qiLmPPLi~K 568 (885)
T KOG2023|consen 491 KVQEAACSAFATLEEEAGEELV-PYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYI-QILMPPLIEK 568 (885)
T ss_pred HHHHHHHHHHHHHHHhccchhH-HHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHH-HHhccHHHHH
Confidence 7665555554422221111111 1233456666666532111111133445555554433 246776 6789999987
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHH
Q 000827 778 FWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGIL 857 (1265)
Q Consensus 778 ~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll 857 (1265)
+ ...+++.+.+-.+++|+..++.++| +.+.+|-.-+...|.+|+...- + .+.
T Consensus 569 W--~~lsd~DKdLfPLLEClSsia~AL~-------------~gF~P~~~~Vy~Rc~~il~~t~----------q---~~~ 620 (885)
T KOG2023|consen 569 W--ELLSDSDKDLFPLLECLSSIASALG-------------VGFLPYAQPVYQRCFRILQKTL----------Q---LLA 620 (885)
T ss_pred H--HhcCcccchHHHHHHHHHHHHHHHh-------------ccccccCHHHHHHHHHHHHHHH----------H---HHH
Confidence 6 3334445667778899777766544 4555666666666666654320 0 011
Q ss_pred HHhhhcc--cchH---HHHHHHHHHHHHHhchhhhchHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHH
Q 000827 858 YAFQEQT--SDDA---NVMLNGFGAVVNSLGQRVKPYLPQ--ICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQ 930 (1265)
Q Consensus 858 ~~l~e~~--~ed~---~~al~aL~~I~~~lg~~~~p~Lp~--ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ 930 (1265)
..-++.+ ..|+ -.++.-|+-+++++|.++.|.+.+ ++..++.|+.|+-++||++|.-++|.++...-... ..
T Consensus 621 ~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v-~p 699 (885)
T KOG2023|consen 621 KVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHV-IP 699 (885)
T ss_pred hccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhc-cc
Confidence 1111111 1222 357788899999999999988876 88999999999999999999999999998642211 11
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhhCC
Q 000827 931 LMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRH--EKVQENCIDLVGRIADRGA 1008 (1265)
Q Consensus 931 ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~--~~Vre~ai~~ig~Ia~~~~ 1008 (1265)
.+..++++|...+.-+.-.|..++|||+++++..+|. .+.||+..++..|+.+++..+ ..+-|+..-+||+++-..+
T Consensus 700 ~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~-~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~P 778 (885)
T KOG2023|consen 700 NLADFLPILGANLNPENISVCNNAIWAIGEIALKMGL-KMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICP 778 (885)
T ss_pred hHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhch-hhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCH
Confidence 2344555555566666678999999999999999976 578999999999999988654 6788999999999998866
Q ss_pred CCcChHHHHHHHHHH---HHHHhhchHHHHHHHHHHHHHHH
Q 000827 1009 EFVPAREWMRICFEL---LEMLKAHKKGIRRATVNTFGYIA 1046 (1265)
Q Consensus 1009 ~~~~~~e~~~il~~L---L~~Lk~~~~~iR~~a~~tlg~Ia 1046 (1265)
+.+.+. ....+..+ ++.+++. .-+..|...|..+.
T Consensus 779 e~vAp~-l~~f~~pWc~sl~~i~Dn--eEK~sAFrG~c~mi 816 (885)
T KOG2023|consen 779 EEVAPH-LDSFMRPWCTSLRNIDDN--EEKESAFRGLCNMI 816 (885)
T ss_pred Hhcchh-HHHHHHHHHHHhcccccc--hhHHHHHHHHHHhe
Confidence 544433 22233333 2333332 23455666665554
No 10
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-28 Score=286.60 Aligned_cols=707 Identities=16% Similarity=0.192 Sum_probs=450.3
Q ss_pred HHHHHHhccCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcc-hhhhhhHHHHH
Q 000827 457 IMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLD-ELVRPYVHKIL 535 (1265)
Q Consensus 457 i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~-~~v~p~~~~Ll 535 (1265)
+..+|.+.-+.|+.+|+.|...|.+.++.-= ..++..+-..|++....++.|..+--.+..-+-.-+ ..-..|..+-+
T Consensus 3 ~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf-~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 3 LLELLEKTLSPDQNVRKRAEKQLEQAQSQNF-PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred HHHHHHHHcCCCcchHHHHHHHHHHHHhccH-HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 4567777888899999999999988766210 112222333456655566666644333332111111 11112222111
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhh-hC---hhhHHHHHHHH
Q 000827 536 VVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASA-LG---IPALLPFLKAV 611 (1265)
Q Consensus 536 ~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~-lg---~~~Llp~L~~~ 611 (1265)
.++.++++-+++.+ ...+.++.+.++.+|+++++.||.. +. ||+|+..|...
T Consensus 82 ------------~l~~e~reqVK~~i------------l~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~n 137 (859)
T KOG1241|consen 82 ------------QLPAEIREQVKNNI------------LRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSN 137 (859)
T ss_pred ------------cCCHHHHHHHHHHH------------HHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHh
Confidence 12223444344332 2344566777889999999999987 33 99999999998
Q ss_pred HcCCchhHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHhhcCC--CChhhHHHHHHHHHHHHHHhCccchhh--hHH
Q 000827 612 CQSKKSWQARHTGIKIVQQIAILIGC-AVLPHLRSLVEIIEHGLND--ENQKVRTITALSLAALAEAAAPYGIES--FDS 686 (1265)
Q Consensus 612 l~s~~s~~~R~aal~~L~~i~~~~g~-~l~p~L~~ll~~l~~~L~D--e~~~VR~~A~~aL~~lae~~~p~~~~~--~~~ 686 (1265)
..+..+-..|++.+.++|+||+.... .+..+.+.++..|.++++- ++..||.+|.+||-.-.++....+... -+-
T Consensus 138 v~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~ 217 (859)
T KOG1241|consen 138 VGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY 217 (859)
T ss_pred cccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce
Confidence 87766456899999999999998765 4556889999999999986 467999999999999888776333222 235
Q ss_pred hHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhh--hhhhHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCC-c
Q 000827 687 VLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALY--ASYYTK-EVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGV-E 762 (1265)
Q Consensus 687 iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~--~~~~~~-~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~-~ 762 (1265)
|+...++.....+.++..+ +++.++..|.-+| ...|+. .++.+.+..++++++++..++++.|..+|..+-. .
T Consensus 218 iMqvvcEatq~~d~~i~~a---a~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~ 294 (859)
T KOG1241|consen 218 IMQVVCEATQSPDEEIQVA---AFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLA 294 (859)
T ss_pred eeeeeeecccCCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888777666543333 2333333333332 333444 3778888899999999999999999988865310 0
Q ss_pred chh--hhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhC
Q 000827 763 ADY--IRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLG 840 (1265)
Q Consensus 763 ~~~--l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg 840 (1265)
-++ ..+.-.||--.+| . +..+..++..+.++..+-+.. -.|+.|.. .+++.+|..+.....
T Consensus 295 ~e~~e~~d~~~~p~~~~f--a-----~~a~~~v~P~Ll~~L~kqde~---------~d~DdWnp-~kAAg~CL~l~A~~~ 357 (859)
T KOG1241|consen 295 IEYGEAVDQGLPPSSKYF--A-----RQALQDVVPVLLELLTKQDED---------DDDDDWNP-AKAAGVCLMLFAQCV 357 (859)
T ss_pred HHHHHHhhcCCCchhhHH--H-----HHHHhHhhHHHHHHHHhCCCC---------cccccCcH-HHHHHHHHHHHHHHh
Confidence 000 0011222211111 1 112223333333332222211 11223434 355666666665553
Q ss_pred CCCchhHHHHHHHHHHHHHhhh-cccch---HHHHHHHHHHHHHHhc-hhhhchHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000827 841 ASDIDARLEELLIDGILYAFQE-QTSDD---ANVMLNGFGAVVNSLG-QRVKPYLPQICGTIKWRLNNKSAKVRQQAADL 915 (1265)
Q Consensus 841 ~~~~~~~~~~~ll~~ll~~l~e-~~~ed---~~~al~aL~~I~~~lg-~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~ 915 (1265)
.++ +++.++..+.+ ..+++ +.++..+||+|.++.. ..++|++++.+|.++..+.|++--||.+++|+
T Consensus 358 ~D~--------Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwt 429 (859)
T KOG1241|consen 358 GDD--------IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWT 429 (859)
T ss_pred ccc--------chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHH
Confidence 332 44556666643 44455 5789999999999877 46899999999999999999999999999999
Q ss_pred HHHHHHHHhh-cchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhC---c-----ccCCccHHhHHHHHHHHhc
Q 000827 916 ISRIAVVMKQ-CHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG---M-----TKMTPPIKDLLPRLTPILK 986 (1265)
Q Consensus 916 lg~La~~l~~-~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g---~-----~~l~p~l~~Llp~Ll~~L~ 986 (1265)
+|+|++.+.. +.+..+++.++.++.++|.|+ |.|..++|||+..+++.+- . +...|+...|+..|+..-.
T Consensus 430 lgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~td 508 (859)
T KOG1241|consen 430 LGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTD 508 (859)
T ss_pred HHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhcc
Confidence 9999998765 345678889999999999875 8999999999999997652 1 1355788999999988765
Q ss_pred C---CCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhh-------------chHHHHHHHHHHHHHHHHhhC
Q 000827 987 N---RHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKA-------------HKKGIRRATVNTFGYIAKAIG 1050 (1265)
Q Consensus 987 ~---~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~-------------~~~~iR~~a~~tlg~Ia~~iG 1050 (1265)
. +....|.++.++++.|.+..++.+..- ...+....++.|.. +...+......+|+.|.+.+|
T Consensus 509 r~dgnqsNLR~AAYeALmElIk~st~~vy~~-v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~ 587 (859)
T KOG1241|consen 509 RADGNQSNLRSAAYEALMELIKNSTDDVYPM-VQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVG 587 (859)
T ss_pred ccccchhhHHHHHHHHHHHHHHcCcHHHHHH-HHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4 336799999999999999866543221 11222112211110 012233333444444444444
Q ss_pred cHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCc-hhHHHHHHHHHHHHHHHhchhhhhhHHh
Q 000827 1051 PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE-LNVQNGVLKSLSFLFEYIGEMGKDYIYA 1129 (1265)
Q Consensus 1051 p~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~-~~vq~~vl~al~~l~~~ig~~~~~yi~~ 1129 (1265)
+. +.+. + ..++-.|+..+..+. ..+++.++-+++.+.+++|..+..|++.
T Consensus 588 ~~-~~~~-----------------------~-----d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~ 638 (859)
T KOG1241|consen 588 SD-IREV-----------------------S-----DQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPA 638 (859)
T ss_pred cc-chhH-----------------------H-----HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 31 1000 0 023333344444432 2478889999999999999999999999
Q ss_pred HHHHHHHHhccCC-hhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhcccCC--hHHHHHHHHHHHHHHHHhCHHH
Q 000827 1130 VTPLLEDALMDRD-LVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETS--PHVINAVMEAIEGMRVALGAAV 1206 (1265)
Q Consensus 1130 i~PlL~~~l~d~d-~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~~~s--~~v~~~~~~a~~~~~~~~g~~~ 1206 (1265)
+.|+|...|.+.. -.|--.|..++++++.... ...-..--.+++.++++|-.+. +.|..++++++++++.++|..|
T Consensus 639 f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~-~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F 717 (859)
T KOG1241|consen 639 FKPYLLMGLSNFQEYQVCAAAVGLVGDLARALE-DDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADF 717 (859)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhH
Confidence 9999999996653 3444455566666665332 1111112245667777777654 5699999999999999999875
Q ss_pred --HHHHHHHhhcc-------h--------hhHHHHHHHHHhhhhhcccc-----CcceeccCCC
Q 000827 1207 --VLNYCLQGLFH-------P--------ARKVREVYWKIYNSLYIGAQ-----DALVAAYPTL 1248 (1265)
Q Consensus 1207 --~~~~~~~gl~~-------~--------a~~vr~~~~~~~~~~~~~~~-----~~~~~~~p~~ 1248 (1265)
++.+++.-|.. | -.++|+..-..|+.+.++-. +.+.||.|.+
T Consensus 718 ~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I 781 (859)
T KOG1241|consen 718 EPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHI 781 (859)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHH
Confidence 45556555521 2 14677777788888876644 3455888764
No 11
>PF08920 SF3b1: Splicing factor 3B subunit 1; InterPro: IPR015016 This group of proteins consists of several eukaryotic splicing factor 3B subunit 1 proteins, which associate with p14 through a C terminus beta-strand that interacts with beta-3 of the p14 RNA recognition motif (RRM) beta-sheet, which is in turn connected to an alpha-helix by a loop that makes extensive contacts with both the shorter C-terminal helix and RRM of p14. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly []. ; PDB: 2FHO_A 3LQV_P 2PEH_D 2F9J_P 2F9D_Q.
Probab=99.96 E-value=4.8e-31 Score=257.85 Aligned_cols=112 Identities=65% Similarity=1.128 Sum_probs=36.7
Q ss_pred CCCCCcCcccccCCCCCCCCCCCCCCCCCCCCcccCCcC--cCCCCCcccccccCCCCHHHHhhhhhhhhhcccCCCCCH
Q 000827 283 KRQRSRWDETPATMGSATPMAGATPAAAYTPGVTPVGAV--DVATPTPSAINLRGALTPEQYNLMRWEKDIEERNRPLTD 360 (1265)
Q Consensus 283 ~~~rs~~d~tp~~~~~~~~~~~~~p~~~~~p~~~p~~~~--~~~tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (1265)
.++|||||+||... +.||.+.. +|+||++++.. .|+|++.+.++|++++++|||||||
T Consensus 30 ~~krsRWd~TP~~~-----------------~~TP~~~~~~g~~TP~~~~~~---~mtp~~~~~~~~~~eid~RNrpLTD 89 (144)
T PF08920_consen 30 PKKRSRWDQTPAMG-----------------GATPVGNPAMGMATPMPPSSA---AMTPEQYQAMRWEKEIDERNRPLTD 89 (144)
T ss_dssp -----SBT--------------------------------------------------HHHHHHHHHHHHHHHCTS-S-H
T ss_pred CCCCCCcccCCCcC-----------------CCCCCCCccccccccCCCccc---ccChhhhhhhccccchhhccCcCCH
Confidence 45799999999432 24455444 79999988653 4999999999999999999999999
Q ss_pred HHhhhcCCCCCceecCCCCCCCCCCCchhhcccCCCCCCCCccccCCCCcCCCC
Q 000827 361 EELDAMFPQEGYKILDPPPSYVPIRTPARKLLATPTPLGTPLYQIPEENRGQQF 414 (1265)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (1265)
||||+|||+||||||+||++|+|+|++.++|++||+++...+|.|+++.+...|
T Consensus 90 EELD~mLPseGYkIl~PP~gY~Pirtp~rkl~atptp~~~~gf~mqe~~~~~~~ 143 (144)
T PF08920_consen 90 EELDAMLPSEGYKILEPPAGYEPIRTPARKLMATPTPMGGGGFMMQEEDRSQQY 143 (144)
T ss_dssp HHHHHTS--SSEEE----TT----------------------------------
T ss_pred HHHHHhCCcCCcEEcCCCCCCccccCccccccccCccCCCCcccccCCcccccc
Confidence 999999999999999999999999999999999999987789999987764443
No 12
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.91 E-value=5e-19 Score=200.28 Aligned_cols=694 Identities=15% Similarity=0.135 Sum_probs=403.0
Q ss_pred ccCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhH----HhcCCCCCHHHHHHHHHHHHHHHhhcchhh-hhhHHHHHHHH
Q 000827 464 VKNGTPPQRKTALRQLTDKAREFGAGPLFNRILP----LLMQPTLEDQERHLLVKVIDRVLYKLDELV-RPYVHKILVVI 538 (1265)
Q Consensus 464 lkn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp----~l~~~~led~~R~~~v~vi~~l~~~l~~~v-~p~~~~Ll~~i 538 (1265)
+-+.|+.+|..|-.+|-+.++ .-|.+++- .+|+..-.++-|-.+--++..-+-.-++.. +.|.+.-
T Consensus 14 vLspD~n~rl~aE~ql~~l~~-----~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW---- 84 (858)
T COG5215 14 VLSPDPNARLRAEAQLLELQS-----GDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRW---- 84 (858)
T ss_pred cCCCCCCccccHHHHHHHhcc-----ccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhh----
Confidence 346788899999888877765 22444443 455554456666543333222110001000 0111100
Q ss_pred HhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhh-hC---hhhHHHHHHHHHcC
Q 000827 539 EPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASA-LG---IPALLPFLKAVCQS 614 (1265)
Q Consensus 539 ~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~-lg---~~~Llp~L~~~l~s 614 (1265)
..+|.++++-++.++ ...+.++.+..-+.|++.++.+|.. +. ||.++-.+.....+
T Consensus 85 --------~~~~~E~k~qvK~~a------------l~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~ 144 (858)
T COG5215 85 --------LGMRHESKEQVKGMA------------LRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGD 144 (858)
T ss_pred --------ccCCHHHHHHHHHHH------------HHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccc
Confidence 013334444444333 3345677777888999999999987 32 99999999987766
Q ss_pred CchhHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHhhcCC--CChhhHHHHHHHHHHHHHHhCccch--hhhHHhHH
Q 000827 615 KKSWQARHTGIKIVQQIAILIGC-AVLPHLRSLVEIIEHGLND--ENQKVRTITALSLAALAEAAAPYGI--ESFDSVLK 689 (1265)
Q Consensus 615 ~~s~~~R~aal~~L~~i~~~~g~-~l~p~L~~ll~~l~~~L~D--e~~~VR~~A~~aL~~lae~~~p~~~--~~~~~iL~ 689 (1265)
......+..++.++|++|+.... .+....+.++-.|..+... .+..||.++..||..-...+...+. ...+.++.
T Consensus 145 eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mq 224 (858)
T COG5215 145 EQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQ 224 (858)
T ss_pred cCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhhe
Confidence 55466778899999999998775 4444556666666665443 4679999999999886666543221 12235667
Q ss_pred HHHHhhhccchHHHHHHHHHHhhhhhhhhHhh--hhhhHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcchhh
Q 000827 690 PLWKGIRSHRGKVLAAFLKAIGFIIPLMDALY--ASYYTKE-VMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYI 766 (1265)
Q Consensus 690 ~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~--~~~~~~~-im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l 766 (1265)
..++.....+..... ++++.+...|.-+| .+.|+.. +...+.+.++++++++..++.+.++.+|..+. +.++.
T Consensus 225 vvceatq~~d~e~q~---aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEei-d~~~e 300 (858)
T COG5215 225 VVCEATQGNDEELQH---AAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEI-DGEME 300 (858)
T ss_pred eeehhccCCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh-hhHHH
Confidence 777766554432221 23344433333333 2334443 44455677899999999999999988886531 11121
Q ss_pred hhcchH--HHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCC
Q 000827 767 RSDILP--EFF-RNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASD 843 (1265)
Q Consensus 767 ~~~ilp--~l~-~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~ 843 (1265)
..-+| +.. -+| . +..+..++..+..+..+-|. ...++.|.. .+++.+|.++...+..+
T Consensus 301 -~~~~pe~p~qn~~f--a-----~aav~dvlP~lL~LL~~q~e---------d~~~DdWn~-smaA~sCLqlfaq~~gd- 361 (858)
T COG5215 301 -DKYLPEVPAQNHGF--A-----RAAVADVLPELLSLLEKQGE---------DYYGDDWNP-SMAASSCLQLFAQLKGD- 361 (858)
T ss_pred -HhhcccCchhhcch--H-----HHHHHHHHHHHHHHHHhcCC---------Cccccccch-hhhHHHHHHHHHHHhhh-
Confidence 01111 000 011 0 01112222222222222111 112233333 45666777777665432
Q ss_pred chhHHHHHHHHHHHHHh-hhcccch---HHHHHHHHHHHHHHhch-hhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000827 844 IDARLEELLIDGILYAF-QEQTSDD---ANVMLNGFGAVVNSLGQ-RVKPYLPQICGTIKWRLNNKSAKVRQQAADLISR 918 (1265)
Q Consensus 844 ~~~~~~~~ll~~ll~~l-~e~~~ed---~~~al~aL~~I~~~lg~-~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~ 918 (1265)
++..+ ++... +...+++ ++++.+|||.+..+-.. .+.+|+||.+|.|...+.|+.--|.+.++|++|+
T Consensus 362 ---~i~~p----Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~ 434 (858)
T COG5215 362 ---KIMRP----VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGA 434 (858)
T ss_pred ---HhHHH----HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHH
Confidence 22223 33222 2234444 57899999999998765 4679999999999999999999999999999999
Q ss_pred HHHHHh----hcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCc------ccCCccHHhHHHHHHHHh--c
Q 000827 919 IAVVMK----QCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM------TKMTPPIKDLLPRLTPIL--K 986 (1265)
Q Consensus 919 La~~l~----~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~------~~l~p~l~~Llp~Ll~~L--~ 986 (1265)
|+..+. +|.| +......++-.+. +.|.+..+++|+..++++.+.+ ..+.++...|+..|+..- .
T Consensus 435 iad~va~~i~p~~H---l~~~vsa~liGl~-D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~ 510 (858)
T COG5215 435 IADHVAMIISPCGH---LVLEVSASLIGLM-DCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELA 510 (858)
T ss_pred HHHHHHHhcCcccc---ccHHHHHHHhhhh-ccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhh
Confidence 998654 3443 2212222222233 3578888999999999987743 235666677777776542 2
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhcccc
Q 000827 987 NRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQE 1066 (1265)
Q Consensus 987 ~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~L~~~e 1066 (1265)
.+....|.+..+++|.+....++-+. +++..+.+..-+. + -.|+......+.-++ .+..+|
T Consensus 511 ~Ne~n~R~s~fsaLgtli~~~~d~V~-----~~~a~~~~~~~~k---l----~~~isv~~q~l~~eD-------~~~~~e 571 (858)
T COG5215 511 LNESNLRVSLFSALGTLILICPDAVS-----DILAGFYDYTSKK---L----DECISVLGQILATED-------QLLVEE 571 (858)
T ss_pred ccchhHHHHHHHHHHHHHhhcchhHH-----HHHHHHHHHHHHH---H----HHHHHHhhhhhhhHH-------HHHHHH
Confidence 34467899999999999887655432 3333333211110 0 111111111111111 111222
Q ss_pred hhhHHHHHHHHHHHHhhcCC--cc----cHHHHHhhcCCCc-hhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhc
Q 000827 1067 RQNRVCTTVAIAIVAETCSP--FT----VLPALMNEYRVPE-LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALM 1139 (1265)
Q Consensus 1067 ~~~R~~~~~ai~~l~e~~gp--~~----vlPaL~~~~~~~~-~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~ 1139 (1265)
.+...|.. +..+....++ .. ++-.++..+.+.. ..+.+.++-+++.+...+++.+..|...+.|+|..+|+
T Consensus 572 lqSN~~~v--l~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln 649 (858)
T COG5215 572 LQSNYIGV--LEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALN 649 (858)
T ss_pred HHHHHHHH--HHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Confidence 22222221 2223333343 12 2333333333332 23566788889998888899999999999999999997
Q ss_pred cCChhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhccc--CChHHHHHHHHHHHHHHHHhCHHHH--HHHHHHhh
Q 000827 1140 DRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFE--TSPHVINAVMEAIEGMRVALGAAVV--LNYCLQGL 1215 (1265)
Q Consensus 1140 d~d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~~--~s~~v~~~~~~a~~~~~~~~g~~~~--~~~~~~gl 1215 (1265)
..|-.+-.+|..+++++|... |.++-..-..+++.+.+.|.. +.+++..++++++++++.++|.++. ++-+..-+
T Consensus 650 ~~d~~v~~~avglvgdlantl-~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~ 728 (858)
T COG5215 650 CTDRFVLNSAVGLVGDLANTL-GTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLF 728 (858)
T ss_pred chhHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 778888888889999887543 233222223566777777765 4578999999999999999998753 22222211
Q ss_pred ------cchh-----hHHHHHHHHHhhhhhccccCcce
Q 000827 1216 ------FHPA-----RKVREVYWKIYNSLYIGAQDALV 1242 (1265)
Q Consensus 1216 ------~~~a-----~~vr~~~~~~~~~~~~~~~~~~~ 1242 (1265)
-.++ -+-|.-.....|..|++-.|++.
T Consensus 729 qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~ 766 (858)
T COG5215 729 QQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSK 766 (858)
T ss_pred HHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 1122 22333344557778877555443
No 13
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.3e-19 Score=210.27 Aligned_cols=573 Identities=16% Similarity=0.213 Sum_probs=384.0
Q ss_pred cCC-CHhHHHHHHHHHHHHH---h-hcCChhhHHHHhHHhcCCCCCH--HHHHHHHHHHHHHHhhcchhhhhhHHH-HHH
Q 000827 465 KNG-TPPQRKTALRQLTDKA---R-EFGAGPLFNRILPLLMQPTLED--QERHLLVKVIDRVLYKLDELVRPYVHK-ILV 536 (1265)
Q Consensus 465 kn~-~~~vR~~A~r~L~~~A---~-~~G~~~~~~~iLp~l~~~~led--~~R~~~v~vi~~l~~~l~~~v~p~~~~-Ll~ 536 (1265)
|++ +..||..|+++|.+-- + .|.-+.-+|.|+...|+.+.+. +-||.++..+-+|....=..+.+|+.+ |+.
T Consensus 183 k~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfa 262 (859)
T KOG1241|consen 183 KEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFA 262 (859)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5669999999995522 2 3333455677888888765543 346666666666665555667788888 666
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHH-----------h--ch----------------HHHHHhhcc---CCCCchHHH
Q 000827 537 VIEPLLIDEDYYARVEGREIISNLSKA-----------A--GL----------------ATMIAAMRP---DIDNIDEYV 584 (1265)
Q Consensus 537 ~i~~lL~ded~~VR~~a~~il~~La~~-----------~--Gl----------------~~~~~~L~~---~l~~~d~~v 584 (1265)
.-...+..++..|-..|.+-=+++.+. . |. +.+++.|.. +-++++..+
T Consensus 263 itl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp 342 (859)
T KOG1241|consen 263 ITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNP 342 (859)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcH
Confidence 666667777777887777766655432 0 21 223344433 233344458
Q ss_pred HHHHHHHHHHHHhhhC---hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCC---CcchhHHHHHHHHHhhcCCCC
Q 000827 585 RNTTARAFSVVASALG---IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGC---AVLPHLRSLVEIIEHGLNDEN 658 (1265)
Q Consensus 585 R~~aa~~l~~lA~~lg---~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~---~l~p~L~~ll~~l~~~L~De~ 658 (1265)
-++++.|+..+|+..| ++.++||+.+.+++++ |+.|++|++++| |+..|. .+.|...+.+|.+...+.|++
T Consensus 343 ~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pd-wr~reaavmAFG--SIl~gp~~~~Lt~iV~qalp~ii~lm~D~s 419 (859)
T KOG1241|consen 343 AKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPD-WRNREAAVMAFG--SILEGPEPDKLTPIVIQALPSIINLMSDPS 419 (859)
T ss_pred HHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcc-hhhhhHHHHHHH--hhhcCCchhhhhHHHhhhhHHHHHHhcCch
Confidence 9999999999999988 8999999999999987 999999999999 777775 567899999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhCccc--hhhhHHhHHHHHHhhhccchH------HHHHHHHHHhhhhhhhhH-hhhhhhHHHH
Q 000827 659 QKVRTITALSLAALAEAAAPYG--IESFDSVLKPLWKGIRSHRGK------VLAAFLKAIGFIIPLMDA-LYASYYTKEV 729 (1265)
Q Consensus 659 ~~VR~~A~~aL~~lae~~~p~~--~~~~~~iL~~L~~~l~~~~~~------~la~~l~a~~~lip~~~~-~~~~~~~~~i 729 (1265)
.-||.++++++|++++.+.... ..+...++..+.+++.++-.. ++..+.+++....+.=.. .....+...|
T Consensus 420 l~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~i 499 (859)
T KOG1241|consen 420 LWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAI 499 (859)
T ss_pred hhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHH
Confidence 9999999999999999986432 234567888999999886422 333333333222111100 0112344567
Q ss_pred HHHHHHHhCC---CCHHHHHHHHHHHHHhhhccCCcchhhhhc---chHHHHHHHHHH----h-hhhhHHHHH----HHH
Q 000827 730 MFILIREFQS---PDEEMKKIVLKVVKQCVSTEGVEADYIRSD---ILPEFFRNFWVR----R-MALDRRNYK----QLV 794 (1265)
Q Consensus 730 m~~L~~~l~~---~de~~r~~al~~l~~~~~~~~~~~~~l~~~---ilp~l~~~~~~~----~-~~~d~~~~~----~ll 794 (1265)
+..|+..... .+-..|..+.+++.+++... +++.++. +....+..+-.. . .-.|+.... .+.
T Consensus 500 i~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~s---t~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc 576 (859)
T KOG1241|consen 500 IGSLLKVTDRADGNQSNLRSAAYEALMELIKNS---TDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLC 576 (859)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHHHHcC---cHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHH
Confidence 7777766543 23457888999999988764 3333221 111112211000 0 011222222 233
Q ss_pred HHHHHHHHhcCh------hhhHHHHHHHhcC-CChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhh-cccc
Q 000827 795 ETTVEIANKVGV------ADIVGRIVEDLKD-ESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQE-QTSD 866 (1265)
Q Consensus 795 ~~~~~la~~~g~------~~il~~i~~~l~d-~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e-~~~e 866 (1265)
.++..+..+++. ++++..+...+.. .+.-+...++-++..++..+|... .++.+.+.+.++..++. +...
T Consensus 577 ~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F--~kym~~f~pyL~~gL~n~~e~q 654 (859)
T KOG1241|consen 577 NTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGF--AKYMPAFKPYLLMGLSNFQEYQ 654 (859)
T ss_pred HHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhH--HHHHHHHHHHHHHHhhcchHHH
Confidence 556666677665 2344444444443 445566677777777777777643 45666677777777744 2234
Q ss_pred hHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh-
Q 000827 867 DANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNK--SAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYL- 943 (1265)
Q Consensus 867 d~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~--~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L- 943 (1265)
+..+++.-.|.+++.++..|.||-..++..|+.+|.++ |..|+-+...+.|.||..++..| +.++.-+.+.|...-
T Consensus 655 Vc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F-~~Yl~~vm~llq~as~ 733 (859)
T KOG1241|consen 655 VCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADF-EPYLEMVMPLLQQASS 733 (859)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHh
Confidence 45678888999999999999999999999999999987 78899999999999999999888 456666666654422
Q ss_pred --CCC-------C-HHHHHHHHHHHHHHHHHhCc----ccCCccHHhHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhh-
Q 000827 944 --GEE-------Y-PEVLGSILGALKAIVNVIGM----TKMTPPIKDLLPRLTPILKNRH--EKVQENCIDLVGRIADR- 1006 (1265)
Q Consensus 944 --~d~-------~-~~V~~~al~aL~~lv~~~g~----~~l~p~l~~Llp~Ll~~L~~~~--~~Vre~ai~~ig~Ia~~- 1006 (1265)
.|. | .++|.+++.|..-++..++. ..+.||++.|+..+-.+-.+.. ..+-..++.+||.|+..
T Consensus 734 ~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~f 813 (859)
T KOG1241|consen 734 VQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMF 813 (859)
T ss_pred ccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHc
Confidence 111 1 36899999999999999973 3467999999998888776643 67888999999999998
Q ss_pred CCCCcChHHHHHHHHHHHH-HHhhchHHHHHHHHHHHHHHH
Q 000827 1007 GAEFVPAREWMRICFELLE-MLKAHKKGIRRATVNTFGYIA 1046 (1265)
Q Consensus 1007 ~~~~~~~~e~~~il~~LL~-~Lk~~~~~iR~~a~~tlg~Ia 1046 (1265)
|+.....+.-...+..+|+ ..|......|..|-.+.-.|-
T Consensus 814 g~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~~A~wa~e~ik 854 (859)
T KOG1241|consen 814 GKGVIKLFLDEDWIKDFLNEGRKSSTQKTKDLARWATEEIK 854 (859)
T ss_pred ccchhhhhcchHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 5544443311244555553 233444455555555554443
No 14
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.89 E-value=2.8e-17 Score=195.61 Aligned_cols=774 Identities=14% Similarity=0.196 Sum_probs=472.1
Q ss_pred hhHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHHhhcCC-------hhhHHHHhHHhcCCCCCHH-----HHHHHHHHH
Q 000827 449 PDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGA-------GPLFNRILPLLMQPTLEDQ-----ERHLLVKVI 516 (1265)
Q Consensus 449 ~~~~~~~~i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~-------~~~~~~iLp~l~~~~led~-----~R~~~v~vi 516 (1265)
+++..+..+-+|...+-+|..+.|-.+.-.|.....++.| ..++..++|.+.+. .+-| .+-....++
T Consensus 79 ke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~-i~~qe~~sai~~e~lDil 157 (1233)
T KOG1824|consen 79 KEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQA-ISKQEDVSAIKCEVLDIL 157 (1233)
T ss_pred hHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHH-hhhcccchhhHHHHHHHH
Confidence 4566777888888887788888887765555444444443 24677777777653 2332 344455677
Q ss_pred HHHHhhcchhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhc---hHHHHHhhccCCCCchH-HHHHHHHHHH
Q 000827 517 DRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAG---LATMIAAMRPDIDNIDE-YVRNTTARAF 592 (1265)
Q Consensus 517 ~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~G---l~~~~~~L~~~l~~~d~-~vR~~aa~~l 592 (1265)
..+..++|.++.++-..|+.++.+-|...-..||..|.-+|+.|+..++ +..++..|...+..... ..-++-.+++
T Consensus 158 ~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l 237 (1233)
T KOG1824|consen 158 ADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCL 237 (1233)
T ss_pred HHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 7788899999888888999999999999889999999999999998874 34455555555554433 3445678999
Q ss_pred HHHHhhhC------hhhHHHHHHHHH---cCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcC--------
Q 000827 593 SVVASALG------IPALLPFLKAVC---QSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLN-------- 655 (1265)
Q Consensus 593 ~~lA~~lg------~~~Llp~L~~~l---~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~-------- 655 (1265)
+.+++.-| .+.++|++.++| ...+ ...|+..+++++.+.......+.||.+.++......+.
T Consensus 238 ~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~d-DELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd 316 (1233)
T KOG1824|consen 238 AAICRQAGHRFGSHLDKIVPLVADYCNKIEEDD-DELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYD 316 (1233)
T ss_pred HHHHHHhcchhhcccchhhHHHHHHhcccccCc-HHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCC
Confidence 99998855 788999999999 4444 67899999999966655555899999999998887763
Q ss_pred --------------------------CCChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhccchH----HHHH
Q 000827 656 --------------------------DENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGK----VLAA 705 (1265)
Q Consensus 656 --------------------------De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~~~----~la~ 705 (1265)
|-+++||++|++|+..+...-..+....+..+=+.+...+++.... ++..
T Consensus 317 ~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~ 396 (1233)
T KOG1824|consen 317 TEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHA 396 (1233)
T ss_pred CccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHH
Confidence 1247999999999998875533332333344555555555543221 3333
Q ss_pred HHHHHh---hhhhhh-h-----H-------hhhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhcc-CCcchhhhh
Q 000827 706 FLKAIG---FIIPLM-D-----A-------LYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTE-GVEADYIRS 768 (1265)
Q Consensus 706 ~l~a~~---~lip~~-~-----~-------~~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~-~~~~~~l~~ 768 (1265)
+...+. ..++.+ + . .+...-...|+..+.+.+++..-.-+..++..+.+++... |.-.+.+ .
T Consensus 397 yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~-~ 475 (1233)
T KOG1824|consen 397 YIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHI-P 475 (1233)
T ss_pred HHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcc-c
Confidence 333322 222222 1 1 1111112234455555555333333445566666665443 1111111 2
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChh-------hhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCC
Q 000827 769 DILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVA-------DIVGRIVEDLKDESEPYRRMVMETIEKVVANLGA 841 (1265)
Q Consensus 769 ~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~-------~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~ 841 (1265)
.++|-+...+ .-+.+.+. .....+.++..+....+.+ .+...+.....|.+..+-..++-.+.+++..+-.
T Consensus 476 slvpgI~~~l-~DkSsss~-~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirp 553 (1233)
T KOG1824|consen 476 SLVPGIIYSL-NDKSSSSN-LKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRP 553 (1233)
T ss_pred ccchhhhhhc-CCccchHH-HHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcc
Confidence 3444433322 00111111 1111222322222222221 2233445566788888888888888888877622
Q ss_pred CC-----chhHHHHHHHHHHHHHhhh--cccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000827 842 SD-----IDARLEELLIDGILYAFQE--QTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAAD 914 (1265)
Q Consensus 842 ~~-----~~~~~~~~ll~~ll~~l~e--~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~ 914 (1265)
.. ........+++..+..|.. ...++++.++.++|.++..+|..++..||.+++.++..|++ +.-|..|+.
T Consensus 554 l~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n--EiTRl~Avk 631 (1233)
T KOG1824|consen 554 LQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN--EITRLTAVK 631 (1233)
T ss_pred cCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc--hhHHHHHHH
Confidence 11 1122344555555555532 23356889999999999999998999999999999999987 457899999
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCcc-HHhHHHHHHHHhcCCCHHHH
Q 000827 915 LISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPP-IKDLLPRLTPILKNRHEKVQ 993 (1265)
Q Consensus 915 ~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~-l~~Llp~Ll~~L~~~~~~Vr 993 (1265)
++..|+..--.-.-...+.++.+.+..++.-..-..+...+.++..++.+.+. .+.++ ++.++..|..++...+..+-
T Consensus 632 Alt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~-~~~~~~~e~vL~el~~Lisesdlhvt 710 (1233)
T KOG1824|consen 632 ALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSD-SIPAELLEAVLVELPPLISESDLHVT 710 (1233)
T ss_pred HHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHhhhhhhHHHHHHH
Confidence 99998863211111235555666665555433334566778889999988854 34433 35566666777777777788
Q ss_pred HHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhccc------
Q 000827 994 ENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAH--KKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQ------ 1065 (1265)
Q Consensus 994 e~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~--~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~L~~~------ 1065 (1265)
+.++.++..++..-+..+.. --..++.+++..++++ .-+.-.++..-|..+..+--+.-=.-.|+..+..+
T Consensus 711 ~~a~~~L~tl~~~~ps~l~~-~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~ 789 (1233)
T KOG1824|consen 711 QLAVAFLTTLAIIQPSSLLK-ISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVT 789 (1233)
T ss_pred HHHHHHHHHHHhcccHHHHH-HhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccc
Confidence 88888888887763322211 1246777778777776 22222233344444433222210033333333322
Q ss_pred ---chhhHHHHHHHHHHHHhhcCC--cccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhh----hHHhHHHHHHH
Q 000827 1066 ---ERQNRVCTTVAIAIVAETCSP--FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKD----YIYAVTPLLED 1136 (1265)
Q Consensus 1066 ---e~~~R~~~~~ai~~l~e~~gp--~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~----yi~~i~PlL~~ 1136 (1265)
..+.-...+.+++.+...|+. -.+.-.|...+..|..+..-.++..|+ +|+.+.+ +...+...+..
T Consensus 790 ~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~Ls-----lGElgr~~~~s~~~e~~~~iie 864 (1233)
T KOG1824|consen 790 DGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLS-----LGELGRRKDLSPQNELKDTIIE 864 (1233)
T ss_pred cchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhh-----hhhhccCCCCCcchhhHHHHHH
Confidence 123345567777788888874 244556777777776666555554443 3665433 34555567778
Q ss_pred HhccCChhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhcccCChHHHHHHHHHHHHHHHHhCHHHH---HHHHHH
Q 000827 1137 ALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVV---LNYCLQ 1213 (1265)
Q Consensus 1137 ~l~d~d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~~~s~~v~~~~~~a~~~~~~~~g~~~~---~~~~~~ 1213 (1265)
++....++++..|+.+++.++.|.. ..|+..++..|- +.|+=+--.+.++..+.+....+.+ ..-+|.
T Consensus 865 af~sp~edvksAAs~ALGsl~vgnl--------~~yLpfil~qi~-sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~ 935 (1233)
T KOG1824|consen 865 AFNSPSEDVKSAASYALGSLAVGNL--------PKYLPFILEQIE-SQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWA 935 (1233)
T ss_pred HcCCChHHHHHHHHHHhhhhhcCch--------HhHHHHHHHHHh-cchHhHHHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 8999999999999999999988765 256656555543 3444444455566555554444433 333677
Q ss_pred hhcch----hhHHHHHHHHHhhhhhccccCcceecc
Q 000827 1214 GLFHP----ARKVREVYWKIYNSLYIGAQDALVAAY 1245 (1265)
Q Consensus 1214 gl~~~----a~~vr~~~~~~~~~~~~~~~~~~~~~~ 1245 (1265)
-||-- -.-.|++-...++.+.....++|+|-+
T Consensus 936 lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL 971 (1233)
T KOG1824|consen 936 LLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKL 971 (1233)
T ss_pred HHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHH
Confidence 66543 244577777777777776788877754
No 15
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.83 E-value=1.8e-17 Score=203.84 Aligned_cols=564 Identities=19% Similarity=0.241 Sum_probs=388.7
Q ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcchh-----hhhh
Q 000827 456 KIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDEL-----VRPY 530 (1265)
Q Consensus 456 ~i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~-----v~p~ 530 (1265)
-|..+...+++.+.+.|..+.+.+..+|..+|..+....++|++.+.. .+..++.. ..+..++.. ...|
T Consensus 83 ~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~-----~~a~~~~~~~~~v~~~~~ 156 (759)
T KOG0211|consen 83 PIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLL-----DLAEQLGTFLPDVGGPEY 156 (759)
T ss_pred cHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHH-----HHHHHhcccchhccchhH
Confidence 456666778999999999999999999999999989999999998764 43333322 222333332 3578
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhChhhHHHHHHH
Q 000827 531 VHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKA 610 (1265)
Q Consensus 531 ~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~ 610 (1265)
.+-+++.++.++.+++..||.++.+.+..++...--+. . ...++|.+..
T Consensus 157 ~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~---------------~----------------~~~lv~l~~~ 205 (759)
T KOG0211|consen 157 AHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEK---------------L----------------REHLVPLLKR 205 (759)
T ss_pred HHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHH---------------H----------------HHHHHHHHHH
Confidence 99999999999999999999999988887775532110 1 1245555554
Q ss_pred HHcCCchhHHHHHHH-HHHHHHHHHhCCCc-chhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhhhHHhH
Q 000827 611 VCQSKKSWQARHTGI-KIVQQIAILIGCAV-LPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVL 688 (1265)
Q Consensus 611 ~l~s~~s~~~R~aal-~~L~~i~~~~g~~l-~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL 688 (1265)
...+ + |...+... .+++ ...+..- .+--.++.+.+.++++|..+.||.+++.-++.++..+......
T Consensus 206 l~~~-d-~~~sr~sacglf~---~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~------ 274 (759)
T KOG0211|consen 206 LATG-D-WFQSRLSACGLFG---KLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVK------ 274 (759)
T ss_pred ccch-h-hhhcchhhhhhhH---HhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHH------
Confidence 4444 2 55433322 2222 1111111 1234567888899999999999999999999998776431100
Q ss_pred HHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcchhhhh
Q 000827 689 KPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRS 768 (1265)
Q Consensus 689 ~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l~~ 768 (1265)
+.+++.+.....+..+.+|..+.+.+..+.+.. ..
T Consensus 275 --------------------------------------s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~-------~~ 309 (759)
T KOG0211|consen 275 --------------------------------------SEVLPTLIQLLRDDQDSVREAAVESLVSLLDLL-------DD 309 (759)
T ss_pred --------------------------------------hhccHHHhhhhhcchhhHHHHHHHHHHHHHHhc-------CC
Confidence 011222333344555666666655554333211 00
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHH
Q 000827 769 DILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARL 848 (1265)
Q Consensus 769 ~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~ 848 (1265)
.. .... .+.+.+....+|.++.+|.+++..+..+...+|......
T Consensus 310 ~~-----------------d~~~----------------~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~-- 354 (759)
T KOG0211|consen 310 DD-----------------DVVK----------------SLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRT-- 354 (759)
T ss_pred ch-----------------hhhh----------------hhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcc--
Confidence 00 0000 112334445678899999999999999988887732111
Q ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhc--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhc
Q 000827 849 EELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKP--YLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQC 926 (1265)
Q Consensus 849 ~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p--~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~ 926 (1265)
.++......+.+...+.+.++..-...++..+.....+ ....++|.+..+..|.+..||.+.+..+..++..++.
T Consensus 355 --~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k- 431 (759)
T KOG0211|consen 355 --QLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK- 431 (759)
T ss_pred --cchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc-
Confidence 22222333444333444444333334444444322112 2344778888999999999999998888877776663
Q ss_pred chHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000827 927 HEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 927 ~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~ 1006 (1265)
+..+..+.+++...+.|+.++|+.++.+-+..+....+...+.-+.+.++|.+..+-.+.++++|.+.+..+..++..
T Consensus 432 --~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q 509 (759)
T KOG0211|consen 432 --ERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ 509 (759)
T ss_pred --CcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh
Confidence 445667778888888999999999999877776666554455667789999999998888999999999999999988
Q ss_pred -CCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcH----HHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 000827 1007 -GAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQ----DVLATLLNNLKVQERQNRVCTTVAIAIVA 1081 (1265)
Q Consensus 1007 -~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~----~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~ 1081 (1265)
+-.|+..+ +..+|. ..+.+....+|.+++.++..++...|.+ .++|.++.....+.+..|..++.++..++
T Consensus 510 ~~~~~~~~~-~~~l~~---~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la 585 (759)
T KOG0211|consen 510 LGVEFFDEK-LAELLR---TWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELA 585 (759)
T ss_pred hhhHHhhHH-HHHHHH---hhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHH
Confidence 54554443 333433 3357778999999999999999999964 47788887777667889999999999999
Q ss_pred hhcCC----cccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 000827 1082 ETCSP----FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMA 1157 (1265)
Q Consensus 1082 e~~gp----~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~la 1157 (1265)
+.+|. ..++|.+.+-..++..||+.++++.|-.+...+... ..=..+.|+++...+|.|..+|..|..+.+.+.
T Consensus 586 ~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~--~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 586 EVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDES--VRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchH--HHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 99996 257888888888888899999999998877665432 223578899999999999999999988776655
Q ss_pred h
Q 000827 1158 L 1158 (1265)
Q Consensus 1158 l 1158 (1265)
+
T Consensus 664 l 664 (759)
T KOG0211|consen 664 L 664 (759)
T ss_pred H
Confidence 4
No 16
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.81 E-value=5.9e-15 Score=167.70 Aligned_cols=553 Identities=15% Similarity=0.208 Sum_probs=332.6
Q ss_pred ccCC-CHhHHHHHHHHHHHHHh----hcCChhhHHHHhHHhcCCCC--CHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 000827 464 VKNG-TPPQRKTALRQLTDKAR----EFGAGPLFNRILPLLMQPTL--EDQERHLLVKVIDRVLYKLDELVRPYVHKILV 536 (1265)
Q Consensus 464 lkn~-~~~vR~~A~r~L~~~A~----~~G~~~~~~~iLp~l~~~~l--ed~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~ 536 (1265)
+||+ +..+|..|+++|.+-.. .|--+--.|.|+...|+-.. +.+-.|.++-.+..|....=+.+.+|+.+.|-
T Consensus 186 ~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~ 265 (858)
T COG5215 186 LKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALA 265 (858)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4776 45699999999977222 22223456778888886533 23345655555555554444556688877665
Q ss_pred HH-HhhccCCCHHHHHHHHHHHHHHHHH------------------hch---------HHHHHhhc---cCCCCchHHHH
Q 000827 537 VI-EPLLIDEDYYARVEGREIISNLSKA------------------AGL---------ATMIAAMR---PDIDNIDEYVR 585 (1265)
Q Consensus 537 ~i-~~lL~ded~~VR~~a~~il~~La~~------------------~Gl---------~~~~~~L~---~~l~~~d~~vR 585 (1265)
.+ ...+..++..|...|.+--+.+.+. .|+ +.+++.|. ++.+++|..+.
T Consensus 266 alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~s 345 (858)
T COG5215 266 ALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPS 345 (858)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchh
Confidence 54 3456677777777776665544432 122 22333333 34445566699
Q ss_pred HHHHHHHHHHHhhhC---hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCC---CcchhHHHHHHHHHhhcCCCCh
Q 000827 586 NTTARAFSVVASALG---IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGC---AVLPHLRSLVEIIEHGLNDENQ 659 (1265)
Q Consensus 586 ~~aa~~l~~lA~~lg---~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~---~l~p~L~~ll~~l~~~L~De~~ 659 (1265)
.+|+.|+..+|+..| +..++.|+.+.+++++ |..|++|++++| +...|. .+.+++++.+|.|...+.|+..
T Consensus 346 maA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~-w~nreaavmAfG--Svm~gp~~~~lT~~V~qalp~i~n~m~D~~l 422 (858)
T COG5215 346 MAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSES-WANREAAVMAFG--SVMHGPCEDCLTKIVPQALPGIENEMSDSCL 422 (858)
T ss_pred hhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCch-hhhHHHHHHHhh--hhhcCccHHHHHhhHHhhhHHHHHhccccee
Confidence 999999999999887 6779999999999986 999999999999 455554 4578999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhCccc--hhhhHHhHHHHHHhhhccchHHHHHHHHHHh---hhhhhhh--Hhh-hhhhHHHHHH
Q 000827 660 KVRTITALSLAALAEAAAPYG--IESFDSVLKPLWKGIRSHRGKVLAAFLKAIG---FIIPLMD--ALY-ASYYTKEVMF 731 (1265)
Q Consensus 660 ~VR~~A~~aL~~lae~~~p~~--~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~---~lip~~~--~~~-~~~~~~~im~ 731 (1265)
-|+..+++|+|+++.++.... ..++...+..++.++.|+..++...+...++ ++.+... +.+ .++| ..|+.
T Consensus 423 ~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY-~ai~~ 501 (858)
T COG5215 423 WVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFY-LAILN 501 (858)
T ss_pred ehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHH-HHHHH
Confidence 999999999999998875321 1234456677777777765333322222211 1112110 111 2333 34556
Q ss_pred HHHHH--hCCCCHHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhh
Q 000827 732 ILIRE--FQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADI 809 (1265)
Q Consensus 732 ~L~~~--l~~~de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~i 809 (1265)
.|+.. +...+-..|...+.++..++... + +.+.+. +.+|.... ...+=+|+....+....++
T Consensus 502 ~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~---~----d~V~~~-~a~~~~~~-------~~kl~~~isv~~q~l~~eD- 565 (858)
T COG5215 502 ALVKGTELALNESNLRVSLFSALGTLILIC---P----DAVSDI-LAGFYDYT-------SKKLDECISVLGQILATED- 565 (858)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHhhc---c----hhHHHH-HHHHHHHH-------HHHHHHHHHHhhhhhhhHH-
Confidence 66543 33445556777788887766432 1 122222 22221100 0001111111111111000
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccc-hHHHHHHHHHHHHHHhchhhhc
Q 000827 810 VGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSD-DANVMLNGFGAVVNSLGQRVKP 888 (1265)
Q Consensus 810 l~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~e-d~~~al~aL~~I~~~lg~~~~p 888 (1265)
.+. .+.+....+..+..|+...+.+-. ..+.+++..++..++...+. .-.-.+.+++++...++++|..
T Consensus 566 ------~~~--~~elqSN~~~vl~aiir~~~~~ie--~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~ 635 (858)
T COG5215 566 ------QLL--VEELQSNYIGVLEAIIRTRRRDIE--DVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQ 635 (858)
T ss_pred ------HHH--HHHHHHHHHHHHHHHHHhcCCCcc--cHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 000 122333344455566666555321 22334555444445332111 1235677888889999999999
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHhC
Q 000827 889 YLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEY--PEVLGSILGALKAIVNVIG 966 (1265)
Q Consensus 889 ~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~--~~V~~~al~aL~~lv~~~g 966 (1265)
|++.++|.+...|+-.+.-|-..|+.++|+|+..++..|. .+-..+...|...|..+. -++...++..++.|+-.+|
T Consensus 636 y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~-~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaig 714 (858)
T COG5215 636 YASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFN-IYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIG 714 (858)
T ss_pred HHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHh
Confidence 9999999999999888999999999999999999987653 222333333444444432 3678899999999999997
Q ss_pred cccCCccHHhHHHHHHHHhcC-CC----------HHHHHHHHHHHHHHHhhCC---C-CcChHHHHHHHHHHHHHHhhc-
Q 000827 967 MTKMTPPIKDLLPRLTPILKN-RH----------EKVQENCIDLVGRIADRGA---E-FVPAREWMRICFELLEMLKAH- 1030 (1265)
Q Consensus 967 ~~~l~p~l~~Llp~Ll~~L~~-~~----------~~Vre~ai~~ig~Ia~~~~---~-~~~~~e~~~il~~LL~~Lk~~- 1030 (1265)
. .|.+|++.||-.+..+-.- ++ .++++....+.--|..... + .+|| ..-++.++.+....
T Consensus 715 a-~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Py---v~sif~~i~~iaeDp 790 (858)
T COG5215 715 A-NFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPY---VISIFHKIGMIAEDP 790 (858)
T ss_pred h-hHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhH---HHHHHHHHHHhhcCC
Confidence 5 6899999999877665432 21 1233333333323333211 1 2232 23445556554332
Q ss_pred --hHHHHHHHHHHHHHHHHhhCc
Q 000827 1031 --KKGIRRATVNTFGYIAKAIGP 1051 (1265)
Q Consensus 1031 --~~~iR~~a~~tlg~Ia~~iGp 1051 (1265)
....-++++.-+|.|+...+.
T Consensus 791 ~~se~~traalGLigDla~mfpk 813 (858)
T COG5215 791 NGSEAHTRAALGLIGDLAGMFPK 813 (858)
T ss_pred ccchhHHHHHHHHHHHHHHhCCC
Confidence 233346777778888777654
No 17
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.79 E-value=2.4e-14 Score=189.99 Aligned_cols=681 Identities=11% Similarity=0.108 Sum_probs=393.7
Q ss_pred hhHHHHHHHHHHHHhccCC--CHhHHHHHHHHHHHHHhhcCCh--------hhHHHHhHHhcCCCCCHHHHHHHHHHHHH
Q 000827 449 PDEQKERKIMKLLLKVKNG--TPPQRKTALRQLTDKAREFGAG--------PLFNRILPLLMQPTLEDQERHLLVKVIDR 518 (1265)
Q Consensus 449 ~~~~~~~~i~~lll~lkn~--~~~vR~~A~r~L~~~A~~~G~~--------~~~~~iLp~l~~~~led~~R~~~v~vi~~ 518 (1265)
.-++....+..++.+|+++ +++.|..|++.|..+++.--.. ..+..++.+|.+. +...|..++.++..
T Consensus 7 ~~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg--~~~vk~nAaaaL~n 84 (2102)
T PLN03200 7 DPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG--TLGAKVNAAAVLGV 84 (2102)
T ss_pred CccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC--CHHHHHHHHHHHHH
Confidence 3455667888899999988 7788998888887777654221 1234455555544 34455556666666
Q ss_pred HHhhcc--hhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh--------------chHHHHHhhccCCCCchH
Q 000827 519 VLYKLD--ELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAA--------------GLATMIAAMRPDIDNIDE 582 (1265)
Q Consensus 519 l~~~l~--~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~--------------Gl~~~~~~L~~~l~~~d~ 582 (1265)
+...-. ..+. ....++.|..+|...+..+|..|+.+|..|+... +++.++..+.+-- ..+.
T Consensus 85 LS~~e~nk~~Iv--~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gs-k~d~ 161 (2102)
T PLN03200 85 LCKEEDLRVKVL--LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGN-KQDK 161 (2102)
T ss_pred HhcCHHHHHHHH--HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCc-hhhH
Confidence 554311 1111 1334455555666668889999999999887531 2344444444321 1234
Q ss_pred HHHHHHHHHHHHHHhhhC--hh-----hHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhH-HHHHHHHHhhc
Q 000827 583 YVRNTTARAFSVVASALG--IP-----ALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHL-RSLVEIIEHGL 654 (1265)
Q Consensus 583 ~vR~~aa~~l~~lA~~lg--~~-----~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L-~~ll~~l~~~L 654 (1265)
.++..+..+|..++.+-+ |. ..+|.|..++++.+ ...+..+..++..++...+.....-+ ...+|.+.+++
T Consensus 162 ~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d-~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL 240 (2102)
T PLN03200 162 VVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGN-SDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLL 240 (2102)
T ss_pred HHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH
Confidence 466777778777776533 22 26777778787765 56677777777766543221000001 23577778888
Q ss_pred CC-CChhhHHHHHHHHHHHHHHhCccchhhh--HHhHHHHHHhhhccch--------H-HHHHHHHHHhhhhhhhhHhhh
Q 000827 655 ND-ENQKVRTITALSLAALAEAAAPYGIESF--DSVLKPLWKGIRSHRG--------K-VLAAFLKAIGFIIPLMDALYA 722 (1265)
Q Consensus 655 ~D-e~~~VR~~A~~aL~~lae~~~p~~~~~~--~~iL~~L~~~l~~~~~--------~-~la~~l~a~~~lip~~~~~~~ 722 (1265)
.+ .++.||..|+++|++++.... +..+.. ...++.|.+.+..... . .....+.+++++.--
T Consensus 241 ~sg~~~~VRE~AA~AL~nLAs~s~-e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg------ 313 (2102)
T PLN03200 241 GQGNEVSVRAEAAGALEALSSQSK-EAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG------ 313 (2102)
T ss_pred ccCCChHHHHHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC------
Confidence 64 567999999999999986421 111110 1235666655542210 0 112222233322211
Q ss_pred hhhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhhc-cCCcc--hhhh-hcchHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 000827 723 SYYTKEVMFILIREFQSP-DEEMKKIVLKVVKQCVST-EGVEA--DYIR-SDILPEFFRNFWVRRMALDRRNYKQLVETT 797 (1265)
Q Consensus 723 ~~~~~~im~~L~~~l~~~-de~~r~~al~~l~~~~~~-~~~~~--~~l~-~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~ 797 (1265)
...+++.|...+.+. +......++.++..++.. .+... ..+. ..+.+.+.+-+... +.......+++++
T Consensus 314 ---~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k---~p~~vqe~V~eAL 387 (2102)
T PLN03200 314 ---MSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPR---DTKLVQERIIEAL 387 (2102)
T ss_pred ---chhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCC---CCchhHHHHHHHH
Confidence 122444444444333 111111122222222110 00000 0000 01223333222100 0000001112222
Q ss_pred HH------HHHhcChhhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHH
Q 000827 798 VE------IANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVM 871 (1265)
Q Consensus 798 ~~------la~~~g~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~a 871 (1265)
.. +...+...+.++.++..+......++..++.++..++..-. +....-.....++.++..+...+.+.+..+
T Consensus 388 asl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~-e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A 466 (2102)
T PLN03200 388 ASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKG-GLWEALGGREGVQLLISLLGLSSEQQQEYA 466 (2102)
T ss_pred HHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHcCcHHHHHHHHcCCCHHHHHHH
Confidence 11 11111112334455556666667788887777665542200 000000001123444455543333345567
Q ss_pred HHHHHHHHHHhchhhhchH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHH-H-HHHHHHHHhhCCCCH
Q 000827 872 LNGFGAVVNSLGQRVKPYL-PQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLM-G-HLGVVLYEYLGEEYP 948 (1265)
Q Consensus 872 l~aL~~I~~~lg~~~~p~L-p~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll-~-~L~~~L~~~L~d~~~ 948 (1265)
+.+++.++.+-...-...+ ...+|.|+.+|..++.++|+.|+|+|+.|+..-.++ ..++ . ..++.|.+.|.+.++
T Consensus 467 ~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qi--r~iV~~aGAIppLV~LL~sgd~ 544 (2102)
T PLN03200 467 VALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDI--RACVESAGAVPALLWLLKNGGP 544 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHH--HHHHHHCCCHHHHHHHHhCCCH
Confidence 7778777654332222222 237788889999999999999999999998621111 1222 1 244556666777789
Q ss_pred HHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCC--CcCh-HHHHHHHHHHHH
Q 000827 949 EVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAE--FVPA-REWMRICFELLE 1025 (1265)
Q Consensus 949 ~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~--~~~~-~e~~~il~~LL~ 1025 (1265)
+++..++++|.+++..-. ...++.++.+|...+.+++..++.++|.|...+.. .... ..-...+..|.+
T Consensus 545 ~~q~~Aa~AL~nLi~~~d--------~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~ 616 (2102)
T PLN03200 545 KGQEIAAKTLTKLVRTAD--------AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQ 616 (2102)
T ss_pred HHHHHHHHHHHHHHhccc--------hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHH
Confidence 999999999999987432 23557788888888899999999999999775221 1100 001245677778
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhhCc-------HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCC---------ccc
Q 000827 1026 MLKAHKKGIRRATVNTFGYIAKAIGP-------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP---------FTV 1089 (1265)
Q Consensus 1026 ~Lk~~~~~iR~~a~~tlg~Ia~~iGp-------~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp---------~~v 1089 (1265)
.++..+..++..|+.++..++..-.. ...+|.|+..|+..+...+..++.+|+.++. ++. ..+
T Consensus 617 LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~-~~~~~q~~~~v~~Ga 695 (2102)
T PLN03200 617 LLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR-SIKENRKVSYAAEDA 695 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCHHHHHHHHHcCC
Confidence 88888999999999999998752211 1357888999998888888889999998885 222 257
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhH-HhHHHHHHHHhccCChhHHHHHHHHHHHHHhccc
Q 000827 1090 LPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTAASAVKHMALGVA 1161 (1265)
Q Consensus 1090 lPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi-~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~ 1161 (1265)
+|.|++-+++.+..+.+.++.+|..++..- +...... ...+|.|...+.+.....|..|+.++..++.+..
T Consensus 696 V~pL~~LL~~~d~~v~e~Al~ALanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 696 IKPLIKLAKSSSIEVAEQAVCALANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 899999999998889999999999887642 2222222 3456777888888889999999999988876543
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.76 E-value=1.1e-13 Score=183.58 Aligned_cols=710 Identities=13% Similarity=0.134 Sum_probs=415.5
Q ss_pred HHHhccCCCHhHHHHHHHHHHHHHhhcC------ChhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcc-hhhhhh--
Q 000827 460 LLLKVKNGTPPQRKTALRQLTDKAREFG------AGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLD-ELVRPY-- 530 (1265)
Q Consensus 460 lll~lkn~~~~vR~~A~r~L~~~A~~~G------~~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~-~~v~p~-- 530 (1265)
|+.-|.++++.+|..|+..|..++..-. ..-.+..++..|-+. +.+.|..+...+..|+.... +..+..
T Consensus 63 LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sG--s~eaKe~AA~AL~sLS~~~~~D~~~~~I~ 140 (2102)
T PLN03200 63 LVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSG--SAEAQKAAAEAIYAVSSGGLSDHVGSKIF 140 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCC--CHHHHHHHHHHHHHHHcCcchhhhhhhhh
Confidence 4444678888899888877766554311 012344566666544 67788889899988875431 111100
Q ss_pred -HHHHHHHHHhhccCC---CHHHHHHHHHHHHHHHHHh-----------chHHHHHhhccCCCCchHHHHHHHHHHHHHH
Q 000827 531 -VHKILVVIEPLLIDE---DYYARVEGREIISNLSKAA-----------GLATMIAAMRPDIDNIDEYVRNTTARAFSVV 595 (1265)
Q Consensus 531 -~~~Ll~~i~~lL~de---d~~VR~~a~~il~~La~~~-----------Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~l 595 (1265)
....++.+..+|.+. +..++..+..+|.+|+... +++.++..| .+.++.++..++.++..+
T Consensus 141 v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LL----sS~d~~lQ~eAa~aLa~L 216 (2102)
T PLN03200 141 STEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLL----SSGNSDAQANAASLLARL 216 (2102)
T ss_pred hhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHH----cCCCHHHHHHHHHHHHHH
Confidence 122344444444443 3445666667777776432 344444444 456667777777777777
Q ss_pred HhhhC-------hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhH--HHHHHHHHhhcCC---------C
Q 000827 596 ASALG-------IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHL--RSLVEIIEHGLND---------E 657 (1265)
Q Consensus 596 A~~lg-------~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L--~~ll~~l~~~L~D---------e 657 (1265)
+...+ -...+|.|.+++.+..+...|+.|..+|+.||... ......+ ...++.|...+.. .
T Consensus 217 ass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s-~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~ 295 (2102)
T PLN03200 217 MMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQS-KEAKQAIADAGGIPALINATVAPSKEFMQGEF 295 (2102)
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhCcchhhhcccc
Confidence 65421 12346677777765433568999999999887521 1111000 0123333333332 2
Q ss_pred ChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhccchH-HHHHHHHHHhhhhhhhhHhhhhhh---HHHHHHHH
Q 000827 658 NQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGK-VLAAFLKAIGFIIPLMDALYASYY---TKEVMFIL 733 (1265)
Q Consensus 658 ~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~~~-~la~~l~a~~~lip~~~~~~~~~~---~~~im~~L 733 (1265)
....+..|+++|++++... ..+++.|.+.+...+.. .++..+.++.++++.++....... ...++..|
T Consensus 296 ~~~Lqe~AvwALsNIcgg~--------~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~L 367 (2102)
T PLN03200 296 AQALQENAMGALANICGGM--------SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQIL 367 (2102)
T ss_pred chHHHHHHHHHHHHHhCCc--------hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHH
Confidence 3456899999999998553 24566665555444321 222333444444444432111111 12345678
Q ss_pred HHHhCCCCHH-HHHHHHHHHHHhhhccCCcchhh-hhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-------hc
Q 000827 734 IREFQSPDEE-MKKIVLKVVKQCVSTEGVEADYI-RSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIAN-------KV 804 (1265)
Q Consensus 734 ~~~l~~~de~-~r~~al~~l~~~~~~~~~~~~~l-~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~-------~~ 804 (1265)
++.+++.++. ++..+.+++..++..... ...+ .....+.++.-+ ... +.+.....+.++..++. .+
T Consensus 368 V~Llr~k~p~~vqe~V~eALasl~gN~~l-~~~L~~~daik~LV~LL-~~~---~~evQ~~Av~aL~~L~~~~~e~~~aI 442 (2102)
T PLN03200 368 VKLLKPRDTKLVQERIIEALASLYGNAYL-SRKLNHAEAKKVLVGLI-TMA---TADVQEELIRALSSLCCGKGGLWEAL 442 (2102)
T ss_pred HHHhCCCCCchhHHHHHHHHHHhcCChHH-HHHHHhccchhhhhhhh-ccC---CHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 8888877655 356677777554432100 0111 112233333322 111 11111222223222221 11
Q ss_pred ChhhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhH-HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc
Q 000827 805 GVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDAR-LEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLG 883 (1265)
Q Consensus 805 g~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~-~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg 883 (1265)
.....++.++..|+..+...+..++.++..+... ..+.... ...-.++.+...+.......++.++-+++.++.. .
T Consensus 443 i~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~--ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~ 519 (2102)
T PLN03200 443 GGREGVQLLISLLGLSSEQQQEYAVALLAILTDE--VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-S 519 (2102)
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-c
Confidence 1122467778888888888888887766655421 1110000 0112344455555433333355666677766652 3
Q ss_pred hhhhchHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 000827 884 QRVKPYLP--QICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAI 961 (1265)
Q Consensus 884 ~~~~p~Lp--~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~l 961 (1265)
...+..+. ..+|.|+.+|++.++++++.|+++|..|+..- +...++.|. +.|..+++.+...++.+|+.+
T Consensus 520 ~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~----d~~~I~~Lv----~LLlsdd~~~~~~aL~vLgnI 591 (2102)
T PLN03200 520 EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA----DAATISQLT----ALLLGDLPESKVHVLDVLGHV 591 (2102)
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc----chhHHHHHH----HHhcCCChhHHHHHHHHHHHH
Confidence 33444452 47888999999999999999999999987532 122333333 334556678888889999888
Q ss_pred HHHhCcccCC-cc--HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHH
Q 000827 962 VNVIGMTKMT-PP--IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRAT 1038 (1265)
Q Consensus 962 v~~~g~~~l~-p~--l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a 1038 (1265)
+.......+. .- ...-++.|.++|++.+..+++.|+.+|..++....++....--...++.++..|+.....++..+
T Consensus 592 lsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keA 671 (2102)
T PLN03200 592 LSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQS 671 (2102)
T ss_pred HhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHH
Confidence 7754332211 00 13578999999999999999999999999987644432222123567788889998888999999
Q ss_pred HHHHHHHHHhhCcH--------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhc------CCcccHHHHHhhcCCCchhH
Q 000827 1039 VNTFGYIAKAIGPQ--------DVLATLLNNLKVQERQNRVCTTVAIAIVAETC------SPFTVLPALMNEYRVPELNV 1104 (1265)
Q Consensus 1039 ~~tlg~Ia~~iGp~--------~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~------gp~~vlPaL~~~~~~~~~~v 1104 (1265)
..+|+.+....... .++|.|++-|++++..++.-++.+++.+++.. +...++|.|+..++.....+
T Consensus 672 A~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~ 751 (2102)
T PLN03200 672 ARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEG 751 (2102)
T ss_pred HHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHH
Confidence 99999998633221 36788999999998888888888888877643 23466899999998887778
Q ss_pred HHHHHHHHHHHHHHhc--hhhhhhHH--hHHHHHHHHhccCChhHHHH--HHHHHHHHHhcccCCCch----hHHH---H
Q 000827 1105 QNGVLKSLSFLFEYIG--EMGKDYIY--AVTPLLEDALMDRDLVHRQT--AASAVKHMALGVAGLGCE----DALV---H 1171 (1265)
Q Consensus 1105 q~~vl~al~~l~~~ig--~~~~~yi~--~i~PlL~~~l~d~d~~~Rq~--A~~~l~~lal~~~g~~~e----~~~~---~ 1171 (1265)
+..+..+|..++.... +...+|+. .++..|.+.|+-.|.....+ |..++..++.--.|.++. -+|. .
T Consensus 752 k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~ 831 (2102)
T PLN03200 752 KRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPS 831 (2102)
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccC
Confidence 8888888877765432 22445543 33445556677777666666 888888887632222221 1111 1
Q ss_pred HHHhhhhhcccCChHHHHHHHHHHHHHHH
Q 000827 1172 LLNYVWPNIFETSPHVINAVMEAIEGMRV 1200 (1265)
Q Consensus 1172 ~ln~l~~~i~~~s~~v~~~~~~a~~~~~~ 1200 (1265)
-+..+...+-+..|.|..-.++.++.+..
T Consensus 832 ~l~~l~~~l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 832 SLEPLVRCLAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 23334455556777787777777766553
No 19
>PF08920 SF3b1: Splicing factor 3B subunit 1; InterPro: IPR015016 This group of proteins consists of several eukaryotic splicing factor 3B subunit 1 proteins, which associate with p14 through a C terminus beta-strand that interacts with beta-3 of the p14 RNA recognition motif (RRM) beta-sheet, which is in turn connected to an alpha-helix by a loop that makes extensive contacts with both the shorter C-terminal helix and RRM of p14. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly []. ; PDB: 2FHO_A 3LQV_P 2PEH_D 2F9J_P 2F9D_Q.
Probab=99.72 E-value=3.8e-19 Score=174.46 Aligned_cols=94 Identities=36% Similarity=0.448 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCC----CCCC-----------CCCCCCcCcccccC
Q 000827 233 AGRRNRWDETPTPGRVADSDGTPAGGVTPGATPAGMT--WDATPKGL----ATPT-----------PKRQRSRWDETPAT 295 (1265)
Q Consensus 233 ~~~~srWD~tP~~~~~~~~~~~~~~~~~~~~tp~~~~--~~~tp~~~----~t~~-----------~~~~rs~~d~tp~~ 295 (1265)
+++|||||+||...+ +||..+. |.+||..+ .|+. ..|||+++||++|.
T Consensus 30 ~~krsRWd~TP~~~~---------------~TP~~~~~~g~~TP~~~~~~~mtp~~~~~~~~~~eid~RNrpLTDEELD~ 94 (144)
T PF08920_consen 30 PKKRSRWDQTPAMGG---------------ATPVGNPAMGMATPMPPSSAAMTPEQYQAMRWEKEIDERNRPLTDEELDA 94 (144)
T ss_dssp -----SBT---------------------------------------------HHHHHHHHHHHHHHHCTS-S-HHHHHH
T ss_pred CCCCCCcccCCCcCC---------------CCCCCCccccccccCCCcccccChhhhhhhccccchhhccCcCCHHHHHH
Confidence 568999999994332 3343333 55555421 1221 25999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCCcCcCCCCCcccccccCCCCHHHHhh
Q 000827 296 MGSATPMAGATPAAAYTPGVTPVGAVDVATPTPSAINLRGALTPEQYNL 344 (1265)
Q Consensus 296 ~~~~~~~~~~~p~~~~~p~~~p~~~~~~~tp~~~~~~~~~~~~~~~~~~ 344 (1265)
++|++||+|+.||++|.|.+||.+ +.|+||++..+ .||++|+....
T Consensus 95 mLPseGYkIl~PP~gY~Pirtp~r-kl~atptp~~~--~gf~mqe~~~~ 140 (144)
T PF08920_consen 95 MLPSEGYKILEPPAGYEPIRTPAR-KLMATPTPMGG--GGFMMQEEDRS 140 (144)
T ss_dssp TS--SSEEE----TT----------------------------------
T ss_pred hCCcCCcEEcCCCCCCccccCccc-cccccCccCCC--CcccccCCccc
Confidence 999999999999999999999977 77999998654 57998876543
No 20
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.1e-13 Score=162.46 Aligned_cols=493 Identities=16% Similarity=0.177 Sum_probs=321.9
Q ss_pred hhHHHHHHHHHhhcCC-CChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhccchHHHHHHHHHHhhhhhhhhH
Q 000827 641 PHLRSLVEIIEHGLND-ENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDA 719 (1265)
Q Consensus 641 p~L~~ll~~l~~~L~D-e~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~ 719 (1265)
.....+.|++.+.++. .+..+|.....-.|.++.+...+- .....++..+++.+......+..++..++. .+..
T Consensus 51 ~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d-~~~~~~~~~~~~~~~tps~~~q~~~~~~l~----~~~~ 125 (569)
T KOG1242|consen 51 QNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVD-PRPISIIEILLEELDTPSKSVQRAVSTCLP----PLVV 125 (569)
T ss_pred HHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccC-cchhHHHHHHHHhcCCCcHHHHHHHHHHhh----hHHH
Confidence 4566788888888876 467888888888888888775432 233478888888887765444444443333 2222
Q ss_pred hhhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 000827 720 LYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVE 799 (1265)
Q Consensus 720 ~~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~ 799 (1265)
.....-...+.+.+.+.+...+-..+..+...+..++...+.. .+-...++..+............++ ...-.+..
T Consensus 126 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~-~~~~~~~l~~l~~ai~dk~~~~~re---~~~~a~~~ 201 (569)
T KOG1242|consen 126 LSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIE-SLKEFGFLDNLSKAIIDKKSALNRE---AALLAFEA 201 (569)
T ss_pred HhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHh-hhhhhhHHHHHHHHhcccchhhcHH---HHHHHHHH
Confidence 2222223334555566666666666666666666666543321 0101122222222111100000011 11112223
Q ss_pred HHHhcCh------hhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHH
Q 000827 800 IANKVGV------ADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLN 873 (1265)
Q Consensus 800 la~~~g~------~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~ 873 (1265)
....+|. -.++..++..+.|....+|+.+..+...++..+..... ..+++.++..+.+.....+.+++.
T Consensus 202 ~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-----K~llpsll~~l~~~kWrtK~asle 276 (569)
T KOG1242|consen 202 AQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-----KLLLPSLLGSLLEAKWRTKMASLE 276 (569)
T ss_pred HHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-----hHhhhhhHHHHHHHhhhhHHHHHH
Confidence 3344454 25677888899999999999999999988888765432 234444444443333344578999
Q ss_pred HHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHH
Q 000827 874 GFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGS 953 (1265)
Q Consensus 874 aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~ 953 (1265)
.+|.++.+-...+.-++|.++|.+...|.|.+++||.++..++-+++.++.+. -+..+++.|++.++|+...+..
T Consensus 277 llg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~----dI~~~ip~Lld~l~dp~~~~~e- 351 (569)
T KOG1242|consen 277 LLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNP----DIQKIIPTLLDALADPSCYTPE- 351 (569)
T ss_pred HHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccH----HHHHHHHHHHHHhcCcccchHH-
Confidence 99999998888899999999999999999999999999999999999988742 3677888888888887643322
Q ss_pred HHHHHHHHHHHhCcccC-CccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--CCCcChHHHHHHHHHHHHHHhhc
Q 000827 954 ILGALKAIVNVIGMTKM-TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG--AEFVPAREWMRICFELLEMLKAH 1030 (1265)
Q Consensus 954 al~aL~~lv~~~g~~~l-~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~--~~~~~~~e~~~il~~LL~~Lk~~ 1030 (1265)
++..+...---+.+ .|.+.-++|.|...|..++...+..++..++.+++-- +..+.++ +..+++.|-..+.+.
T Consensus 352 ---~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapf-l~~Llp~lk~~~~d~ 427 (569)
T KOG1242|consen 352 ---CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPF-LPSLLPGLKENLDDA 427 (569)
T ss_pred ---HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhh-HHHHhhHHHHHhcCC
Confidence 22222211111111 3667788999999999999889999999999998863 2223333 345555555566666
Q ss_pred hHHHHHHHHHHHHHHHHhhCcH---HHHHHHHHhhcccchh-hHHHHHHHHHHHHhhcCC---cccHHHHHhhcCC--Cc
Q 000827 1031 KKGIRRATVNTFGYIAKAIGPQ---DVLATLLNNLKVQERQ-NRVCTTVAIAIVAETCSP---FTVLPALMNEYRV--PE 1101 (1265)
Q Consensus 1031 ~~~iR~~a~~tlg~Ia~~iGp~---~vlp~Ll~~L~~~e~~-~R~~~~~ai~~l~e~~gp---~~vlPaL~~~~~~--~~ 1101 (1265)
.+.+|..+.+++|.+.+..|.. +++|.|+..++..... .|.+.+..++.+....|- ..++|.++..... .+
T Consensus 428 ~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~ 507 (569)
T KOG1242|consen 428 VPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLID 507 (569)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccch
Confidence 8999999999999999998864 5788888877655433 366777777776666554 3567776654322 22
Q ss_pred hhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHHHHHHHHHH
Q 000827 1102 LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHM 1156 (1265)
Q Consensus 1102 ~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~l 1156 (1265)
..++++++-.+.++-...+..+..|++.+++.+...+.|.|+..|-++...=..+
T Consensus 508 ~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~~~~~ 562 (569)
T KOG1242|consen 508 ERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEAGEVE 562 (569)
T ss_pred hhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhhhhhh
Confidence 3466666555544433346778899999999999999999998887776654433
No 21
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=6.3e-13 Score=156.10 Aligned_cols=468 Identities=17% Similarity=0.173 Sum_probs=299.6
Q ss_pred CHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh---chHHHHHhhccCCCCch
Q 000827 505 EDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAA---GLATMIAAMRPDIDNID 581 (1265)
Q Consensus 505 ed~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~---Gl~~~~~~L~~~l~~~d 581 (1265)
.+--|..-+-..+.+++++.. ..|-++.++..+..-+..+...||.....|+..+.... ....+...+...++..+
T Consensus 69 ~~~~~~~~~v~~~~~a~~~~~-~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~ 147 (569)
T KOG1242|consen 69 NDNLRNNVVVLEGTLAFHLQI-VDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTK 147 (569)
T ss_pred hHHHhhhhHHHHHHHHHhccc-cCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhcccc
Confidence 444566555556666665542 33555566666666667788899998888887765443 22444555666666666
Q ss_pred HHHHHHHHHHHHHHHhhhChh-----hHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCC
Q 000827 582 EYVRNTTARAFSVVASALGIP-----ALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLND 656 (1265)
Q Consensus 582 ~~vR~~aa~~l~~lA~~lg~~-----~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~D 656 (1265)
..-|..++..++.+....+.. .++.-|....+++++...|+++..++...+..+|..+.||+-.++|.++..+.|
T Consensus 148 ~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d 227 (569)
T KOG1242|consen 148 IAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGD 227 (569)
T ss_pred HHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhc
Confidence 678888899988888776532 345555666778777777888899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhc--cchH-HHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHH
Q 000827 657 ENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRS--HRGK-VLAAFLKAIGFIIPLMDALYASYYTKEVMFIL 733 (1265)
Q Consensus 657 e~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~--~~~~-~la~~l~a~~~lip~~~~~~~~~~~~~im~~L 733 (1265)
...+||.+|..+.-++...+.+++.+. +++.++..+.+ |+.+ +-...+.++....| .....+++.+++.+
T Consensus 228 ~~~~Vr~Aa~~a~kai~~~~~~~aVK~---llpsll~~l~~~kWrtK~aslellg~m~~~ap----~qLs~~lp~iiP~l 300 (569)
T KOG1242|consen 228 KINKVREAAVEAAKAIMRCLSAYAVKL---LLPSLLGSLLEAKWRTKMASLELLGAMADCAP----KQLSLCLPDLIPVL 300 (569)
T ss_pred cchhhhHHHHHHHHHHHHhcCcchhhH---hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch----HHHHHHHhHhhHHH
Confidence 999999999999999999999988764 44444444332 3433 22223344444443 33456778899999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHH
Q 000827 734 IREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRI 813 (1265)
Q Consensus 734 ~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i 813 (1265)
.+.+-+...++|+.+.+++.+++..... +. | ..++|.+
T Consensus 301 sevl~DT~~evr~a~~~~l~~~~svidN-~d-I-~~~ip~L--------------------------------------- 338 (569)
T KOG1242|consen 301 SEVLWDTKPEVRKAGIETLLKFGSVIDN-PD-I-QKIIPTL--------------------------------------- 338 (569)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHhhcc-HH-H-HHHHHHH---------------------------------------
Confidence 9999999999999998888887765321 11 1 1222322
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHh--chhhhchHH
Q 000827 814 VEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSL--GQRVKPYLP 891 (1265)
Q Consensus 814 ~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~l--g~~~~p~Lp 891 (1265)
++.+.|.+..+. .+.+ .+....-....+......+++.+-..+.+.+.+-+..++..++.++... ...+.||||
T Consensus 339 ld~l~dp~~~~~-e~~~---~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~ 414 (569)
T KOG1242|consen 339 LDALADPSCYTP-ECLD---SLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP 414 (569)
T ss_pred HHHhcCcccchH-HHHH---hhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH
Confidence 333333332211 1111 1111100011112222234454555665543333445666777777777 357899999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHHHHHhCcccC
Q 000827 892 QICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEV-LGSILGALKAIVNVIGMTKM 970 (1265)
Q Consensus 892 ~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V-~~~al~aL~~lv~~~g~~~l 970 (1265)
.++|.|-..+.|+.|+||..++.++|.+.+-++.... ..+++.+.+.+.++...+ +......|.+++..+|.
T Consensus 415 ~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f----~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v--- 487 (569)
T KOG1242|consen 415 SLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF----DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGV--- 487 (569)
T ss_pred HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc----cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccc---
Confidence 9999999999999999999999999999998875322 445555555554443333 34455666666665554
Q ss_pred CccHHhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHH
Q 000827 971 TPPIKDLLPRLTPILKNR--HEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIR 1035 (1265)
Q Consensus 971 ~p~l~~Llp~Ll~~L~~~--~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR 1035 (1265)
.++..+++.++....+. ++++++..+..+..+-..-+....++ ..+++..+++.+.+.+...|
T Consensus 488 -~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~y-i~~i~~~~~k~~ad~de~~~ 552 (569)
T KOG1242|consen 488 -EKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPY-IHEILDEFLKGLADNDEKGR 552 (569)
T ss_pred -hHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHH-HHHHHHHHHHHhhhcCCccc
Confidence 35667777776554433 36677777777765544422222222 45666666655554433333
No 22
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.66 E-value=2.3e-13 Score=167.85 Aligned_cols=539 Identities=14% Similarity=0.130 Sum_probs=343.6
Q ss_pred CCCCCChhHHHHHHHHHHHHhc---cCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhcCCC--CCHHHHHHHHHHHH
Q 000827 443 EEEELSPDEQKERKIMKLLLKV---KNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPT--LEDQERHLLVKVID 517 (1265)
Q Consensus 443 ~~~~l~~~~~~~~~i~~lll~l---kn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~~~--led~~R~~~v~vi~ 517 (1265)
..++++...+.++.-..+++.+ -...-.|+..+.-.+.++....|...+-..++|.+.... .++.-|+-++.-+-
T Consensus 105 ~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~ 184 (759)
T KOG0211|consen 105 KLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLL 184 (759)
T ss_pred cccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3466666666664444444333 233445777788888777777765322223333332211 23344777777666
Q ss_pred HHHhhcchhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhchH----HHHHhhccCCCCchHHHHHHHHHHHH
Q 000827 518 RVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLA----TMIAAMRPDIDNIDEYVRNTTARAFS 593 (1265)
Q Consensus 518 ~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~----~~~~~L~~~l~~~d~~vR~~aa~~l~ 593 (1265)
.++..++.--. ...+++.+..+..++-..-|..+..+.+.++...--. ...........+..+.||+++++-++
T Consensus 185 ~v~~~~~~~~~--~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~ 262 (759)
T KOG0211|consen 185 KVAVGLPKEKL--REHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLG 262 (759)
T ss_pred HHHHhcChHHH--HHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhH
Confidence 66666554322 3445555555555533333444444444443332211 22334445566778889999999999
Q ss_pred HHHhhhC----hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 000827 594 VVASALG----IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSL 669 (1265)
Q Consensus 594 ~lA~~lg----~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL 669 (1265)
.+|..++ +..++|.+.++..+.. ..+|++|+..+..+...+.+.. +....+.+.+.+...|.++.||.......
T Consensus 263 ~~a~~~~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~ 340 (759)
T KOG0211|consen 263 NIAKVLESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGSWRVSYMVADKF 340 (759)
T ss_pred HHHHHHHHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChhHHHHHHHhhhh
Confidence 9999876 7788888888888766 7899999999998888777644 67778888999999999999999998888
Q ss_pred HHHHHHhCccchhhhHHhHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCHHHHHHHH
Q 000827 670 AALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVL 749 (1265)
Q Consensus 670 ~~lae~~~p~~~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de~~r~~al 749 (1265)
..+...+++..... ...++++.. +++...+.+..+.
T Consensus 341 ~~L~~~~~~~~~~~--~~~~~~~~l------------------------------------------~~~~~~e~r~a~a 376 (759)
T KOG0211|consen 341 SELSSAVGPSATRT--QLVPPVSNL------------------------------------------LKDEEWEVRYAIA 376 (759)
T ss_pred hhHHHHhccccCcc--cchhhHHHH------------------------------------------hcchhhhhhHHhh
Confidence 88888887633221 122222222 2233333332222
Q ss_pred HHHHHhhhccCC--cchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHHHHHhcCCChhHHHH
Q 000827 750 KVVKQCVSTEGV--EADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRM 827 (1265)
Q Consensus 750 ~~l~~~~~~~~~--~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i~~~l~d~~~~vR~~ 827 (1265)
.-..+++..... .++...+. +++.+.....|.+..+|..
T Consensus 377 ~~~~~l~~~l~~~~~~~i~~~~---------------------------------------ilp~~~~lv~d~~~~vr~a 417 (759)
T KOG0211|consen 377 KKVQKLACYLNASCYPNIPDSS---------------------------------------ILPEVQVLVLDNALHVRSA 417 (759)
T ss_pred cchHHHhhhcCcccccccchhh---------------------------------------hhHHHHHHHhcccchHHHH
Confidence 222222211100 00000011 1222223334667777777
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc-hhhhchHHHHHHHHHHHhcCCCH
Q 000827 828 VMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLG-QRVKPYLPQICGTIKWRLNNKSA 906 (1265)
Q Consensus 828 a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg-~~~~p~Lp~ilp~Ll~~L~d~~~ 906 (1265)
.+..+..+...+|... ....+++..+..+++...+++...+.-+..+-...+ .++.-+....+|.|..+..|.+|
T Consensus 418 ~a~~~~~~~p~~~k~~----ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~w 493 (759)
T KOG0211|consen 418 LASVITGLSPILPKER----TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLW 493 (759)
T ss_pred HhccccccCccCCcCc----CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhH
Confidence 7776666666666432 122333334334443333344344433333322222 23344556677777788889999
Q ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhc
Q 000827 907 KVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILK 986 (1265)
Q Consensus 907 ~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~ 986 (1265)
+||.+..+.+..++...+..+ +-+.+...+..|+.+...+++.++...+..++..+|.+| +...++|.++.+..
T Consensus 494 Rvr~ail~~ip~la~q~~~~~---~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w---~~~~~i~k~L~~~~ 567 (759)
T KOG0211|consen 494 RVRLAILEYIPQLALQLGVEF---FDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW---ARLEEIPKLLAMDL 567 (759)
T ss_pred HHHHHHHHHHHHHHHhhhhHH---hhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch---hHHHhhHHHHHHhc
Confidence 999999999999998776422 334577778888888889999999999999999999777 66889999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcH----HHHHHHHHhh
Q 000827 987 NRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQ----DVLATLLNNL 1062 (1265)
Q Consensus 987 ~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~----~vlp~Ll~~L 1062 (1265)
+.++.+|.+.+.++..|+...+..+.. ..+++.+.++.++..++||..+++.|..+.+.+.+. .|+|.+..-.
T Consensus 568 q~~y~~R~t~l~si~~la~v~g~ei~~---~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~ 644 (759)
T KOG0211|consen 568 QDNYLVRMTTLFSIHELAEVLGQEITC---EDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLS 644 (759)
T ss_pred CcccchhhHHHHHHHHHHHHhccHHHH---HHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhc
Confidence 989999999999999999984433222 256677777788899999999999999988776653 4677776666
Q ss_pred cccchhhHHHHHHHHHHHH
Q 000827 1063 KVQERQNRVCTTVAIAIVA 1081 (1265)
Q Consensus 1063 ~~~e~~~R~~~~~ai~~l~ 1081 (1265)
++++.++|..+..|.+.+.
T Consensus 645 ~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 645 SDQELDVRYRAILAFGSIE 663 (759)
T ss_pred cCcccchhHHHHHHHHHHH
Confidence 6778888877776666553
No 23
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=7.4e-12 Score=157.04 Aligned_cols=555 Identities=17% Similarity=0.242 Sum_probs=324.4
Q ss_pred hhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh--ch-HHHHHhhccCCC----------CchHH-----H----
Q 000827 527 VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAA--GL-ATMIAAMRPDID----------NIDEY-----V---- 584 (1265)
Q Consensus 527 v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~--Gl-~~~~~~L~~~l~----------~~d~~-----v---- 584 (1265)
+.-+.++|......+|.|.|..++..|..=|+-+-+-. ++ ..+++.|...+. ++.+. .
T Consensus 855 v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp 934 (1702)
T KOG0915|consen 855 VVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTP 934 (1702)
T ss_pred hhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCC
Confidence 34567788899999999999888877654443222111 01 112222211111 01100 0
Q ss_pred ---HHHHHHHHHHHHhhhChhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhh
Q 000827 585 ---RNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKV 661 (1265)
Q Consensus 585 ---R~~aa~~l~~lA~~lg~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~V 661 (1265)
.-++-+=+..+|+-+|-|.|+=-.+++.++.-.|..|.+|..-++.|+...|..+.||+++|+|.+...=-|++++|
T Consensus 935 ~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~V 1014 (1702)
T KOG0915|consen 935 DGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKV 1014 (1702)
T ss_pred CCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHH
Confidence 11233456778888889999988888888777799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCC
Q 000827 662 RTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPD 741 (1265)
Q Consensus 662 R~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~d 741 (1265)
+.+-.. +|..+-..+..+ .+.|..+|+.-|+..+.+.+
T Consensus 1015 q~aM~s-----------------------IW~~Li~D~k~~-------------------vd~y~neIl~eLL~~lt~ke 1052 (1702)
T KOG0915|consen 1015 QDAMTS-----------------------IWNALITDSKKV-------------------VDEYLNEILDELLVNLTSKE 1052 (1702)
T ss_pred HHHHHH-----------------------HHHHhccChHHH-------------------HHHHHHHHHHHHHHhccchh
Confidence 876322 233222222111 12344556666666676777
Q ss_pred HHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHHHHHhcCCC
Q 000827 742 EEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDES 821 (1265)
Q Consensus 742 e~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i~~~l~d~~ 821 (1265)
..+|..+.-++..++.... -+.+. +-+|.+ |. .+.+...|..
T Consensus 1053 wRVReasclAL~dLl~g~~--~~~~~-e~lpel----w~-------------------------------~~fRvmDDIK 1094 (1702)
T KOG0915|consen 1053 WRVREASCLALADLLQGRP--FDQVK-EKLPEL----WE-------------------------------AAFRVMDDIK 1094 (1702)
T ss_pred HHHHHHHHHHHHHHHcCCC--hHHHH-HHHHHH----HH-------------------------------HHHHHHHHHH
Confidence 7777777777776665421 00111 112221 11 1111111222
Q ss_pred hhHHHH---HHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhc-----ccchHHHHHHHHHHHHHHhchhhhchHHHH
Q 000827 822 EPYRRM---VMETIEKVVANLGASDIDARLEELLIDGILYAFQEQ-----TSDDANVMLNGFGAVVNSLGQRVKPYLPQI 893 (1265)
Q Consensus 822 ~~vR~~---a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~-----~~ed~~~al~aL~~I~~~lg~~~~p~Lp~i 893 (1265)
+.+|.. ++.++.+++..+++.. +..-..+.++.+|+.+-+. ..++|...+..+..++..-|..++||+|.+
T Consensus 1095 EsVR~aa~~~~~~lsKl~vr~~d~~-~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~L 1173 (1702)
T KOG0915|consen 1095 ESVREAADKAARALSKLCVRICDVT-NGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKL 1173 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccC-CcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHH
Confidence 334432 3344455544443321 1222346677777776441 235678889999999999999999999999
Q ss_pred HHHHHHHhcCCCHHH-HHHHHHHHHHHHH-----------------HHhhcc---hHHHHHHHHHHHHHhhCCCC-HHHH
Q 000827 894 CGTIKWRLNNKSAKV-RQQAADLISRIAV-----------------VMKQCH---EEQLMGHLGVVLYEYLGEEY-PEVL 951 (1265)
Q Consensus 894 lp~Ll~~L~d~~~~V-R~~A~~~lg~La~-----------------~l~~~~---~~~ll~~L~~~L~~~L~d~~-~~V~ 951 (1265)
+|.++....--.+.| -.-++.+.+.=.+ .+..|. +..+|..++|.+.+.+.... -..+
T Consensus 1174 Ip~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tk 1253 (1702)
T KOG0915|consen 1174 IPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTK 1253 (1702)
T ss_pred HHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcc
Confidence 999998877544433 2222222222111 122222 23456666666665443221 1234
Q ss_pred HHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhch
Q 000827 952 GSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHK 1031 (1265)
Q Consensus 952 ~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~ 1031 (1265)
.++..-+..++..+|. .|+||...++..+++.++|+++.+|.+...++|.+++...+. ....++..++..+-.+.
T Consensus 1254 vg~A~fI~~L~~r~~~-emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~d----q~qKLie~~l~~~l~k~ 1328 (1702)
T KOG0915|consen 1254 VGCASFISLLVQRLGS-EMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPD----QMQKLIETLLADLLGKD 1328 (1702)
T ss_pred hhHHHHHHHHHHHhcc-ccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChH----HHHHHHHHHHHHHhccC
Confidence 5555666677777765 699999999999999999999999999999999999984431 12344555443222222
Q ss_pred HHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCchhHHHHHHHH
Q 000827 1032 KGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKS 1111 (1265)
Q Consensus 1032 ~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~vl~a 1111 (1265)
...+..++.++..|+... +.++++..+ .|+|.++=.... +.......
T Consensus 1329 es~~siscatis~Ian~s------~e~Lkn~as-----------------------aILPLiFLa~~e----e~Ka~q~L 1375 (1702)
T KOG0915|consen 1329 ESLKSISCATISNIANYS------QEMLKNYAS-----------------------AILPLIFLAMHE----EEKANQEL 1375 (1702)
T ss_pred CCccchhHHHHHHHHHhh------HHHHHhhHH-----------------------HHHHHHHHHHhH----HHHHHHHH
Confidence 222333333333343321 112222100 245643321110 11112223
Q ss_pred HHHHHHHh--c-hhhhh-hH-HhHHHHHHHHhccCChhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhh----ccc
Q 000827 1112 LSFLFEYI--G-EMGKD-YI-YAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPN----IFE 1182 (1265)
Q Consensus 1112 l~~l~~~i--g-~~~~~-yi-~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~----i~~ 1182 (1265)
...+|..+ | ..... |. ..+.+..+..+++.....|..++.++.-++.|.....+.++...+...++.+ ||+
T Consensus 1376 w~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRiwd 1455 (1702)
T KOG0915|consen 1376 WNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRIWD 1455 (1702)
T ss_pred HHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhccccc
Confidence 34444433 2 22222 43 3455666677777778899999999988888877666666666655544444 466
Q ss_pred CChHHHHHHHHHHHHHHH
Q 000827 1183 TSPHVINAVMEAIEGMRV 1200 (1265)
Q Consensus 1183 ~s~~v~~~~~~a~~~~~~ 1200 (1265)
...++..++..+++.+.-
T Consensus 1456 GKe~iLKAl~~~~~a~~~ 1473 (1702)
T KOG0915|consen 1456 GKEEILKALASAFEAGLA 1473 (1702)
T ss_pred cHHHHHHHHHHHHHHhHH
Confidence 667777777776666554
No 24
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.58 E-value=2.8e-11 Score=151.23 Aligned_cols=507 Identities=17% Similarity=0.190 Sum_probs=328.0
Q ss_pred HHHHHHHHHHhccCCCHhHHHHHHHHHHHHHhhcCC--hhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhhhhh
Q 000827 453 KERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGA--GPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPY 530 (1265)
Q Consensus 453 ~~~~i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~--~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~ 530 (1265)
...++.+++-+.+ .+...|..+++.|... ...|. ...|..++.++.+. +-..|..+--.+..+...-++.
T Consensus 5 ~~~el~~~~~~~~-~~~~~~~~~l~kli~~-~~~G~~~~~~~~~vi~l~~s~--~~~~Krl~yl~l~~~~~~~~~~---- 76 (526)
T PF01602_consen 5 ISQELAKILNSFK-IDISKKKEALKKLIYL-MMLGYDISFLFMEVIKLISSK--DLELKRLGYLYLSLYLHEDPEL---- 76 (526)
T ss_dssp HHHHHHHHHHCSS-THHHHHHHHHHHHHHH-HHTT---GSTHHHHHCTCSSS--SHHHHHHHHHHHHHHTTTSHHH----
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHH-HHcCCCCchHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhcchhH----
Confidence 3456777777766 6777888888888663 34554 24555666666533 5566776666666655544442
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhC--hhh-HHHH
Q 000827 531 VHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALG--IPA-LLPF 607 (1265)
Q Consensus 531 ~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg--~~~-Llp~ 607 (1265)
+--++..+..=|.++++.+|..|..+|+++...--.+.+...+...+.|++++||+.|+.++..+....+ .+. +++.
T Consensus 77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~ 156 (526)
T PF01602_consen 77 LILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPK 156 (526)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHH
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 2235556666677899999999999999987554556666777778889999999999999999987743 444 7999
Q ss_pred HHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhhh--H
Q 000827 608 LKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESF--D 685 (1265)
Q Consensus 608 L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~~--~ 685 (1265)
|...+.+++ +..+.+|+.++..+ ..........++.++..+.+.+.+.++-++...+..+..++.. ..... .
T Consensus 157 l~~lL~d~~-~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~----~~~~~~~~ 230 (526)
T PF01602_consen 157 LKQLLSDKD-PSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM----EPEDADKN 230 (526)
T ss_dssp HHHHTTHSS-HHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS----SHHHHHHH
T ss_pred HhhhccCCc-chhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccC----ChhhhhHH
Confidence 999998776 78888898888877 1111111255677777777777888888888877777655422 22222 3
Q ss_pred HhHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcchh
Q 000827 686 SVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADY 765 (1265)
Q Consensus 686 ~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~ 765 (1265)
.+++.+...+......++-.+.+++-.+.+.. .....++..|...+.+.+..+|..+++.+..++... +..
T Consensus 231 ~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~------~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~~ 301 (526)
T PF01602_consen 231 RIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP------ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---PPA 301 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH------HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---HHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhhcch------HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---chh
Confidence 56666666666433223322233322222211 134567888999999999999999999999888654 222
Q ss_pred hhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHHHHHhcCC-ChhHHHHHHHHHHHHHHhhCCCCc
Q 000827 766 IRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDE-SEPYRRMVMETIEKVVANLGASDI 844 (1265)
Q Consensus 766 l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i~~~l~d~-~~~vR~~a~~~l~~ii~~lg~~~~ 844 (1265)
+. ...+..+. .....+.......++.+..++.......++..+...+.+. +..+|..++..+..++.......
T Consensus 302 v~----~~~~~~~~-l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~- 375 (526)
T PF01602_consen 302 VF----NQSLILFF-LLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA- 375 (526)
T ss_dssp HG----THHHHHHH-HHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH-
T ss_pred hh----hhhhhhhe-ecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH-
Confidence 21 11111111 1112222222345677777777777777888888888554 67799999999999988774431
Q ss_pred hhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHH
Q 000827 845 DARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNN-KSAKVRQQAADLISRIAVVM 923 (1265)
Q Consensus 845 ~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d-~~~~VR~~A~~~lg~La~~l 923 (1265)
...++.++..+..........++..+..++......- ..++..+...+.+ .++.++..++|++|.++...
T Consensus 376 -----~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~----~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~ 446 (526)
T PF01602_consen 376 -----EWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR----EKILKKLIELLEDISSPEALAAAIWILGEYGELI 446 (526)
T ss_dssp -----HHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH----HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHH
T ss_pred -----HHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhh----HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcc
Confidence 2345555555543222223345555555554432221 2345556677776 68899999999999999877
Q ss_pred hhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhc--CCCHHHHHHHHHHHH
Q 000827 924 KQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILK--NRHEKVQENCIDLVG 1001 (1265)
Q Consensus 924 ~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~--~~~~~Vre~ai~~ig 1001 (1265)
.. .. ....+...+.+...++.+.|+..++.++..+....+.... .+.++..+....+ +.+..||..|...+.
T Consensus 447 ~~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~---~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 447 EN--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEV---QNEILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp TT--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTH---HHHHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred cc--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhh---HHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 64 01 3444555566666777889999999999999987643222 2467777777777 778999999888776
Q ss_pred HH
Q 000827 1002 RI 1003 (1265)
Q Consensus 1002 ~I 1003 (1265)
-+
T Consensus 521 ll 522 (526)
T PF01602_consen 521 LL 522 (526)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 25
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=5e-12 Score=144.93 Aligned_cols=407 Identities=16% Similarity=0.163 Sum_probs=274.1
Q ss_pred hHHH-HHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccch
Q 000827 603 ALLP-FLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGI 681 (1265)
Q Consensus 603 ~Llp-~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~ 681 (1265)
.++. ....+..+.. -..|.+|+..+..+++..|..-.+|+..+++.+..++.|.+.+||..||.++-++++.+.....
T Consensus 42 k~I~~L~~d~a~s~~-~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~ 120 (675)
T KOG0212|consen 42 KVISELAGDYAYSPH-ANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVL 120 (675)
T ss_pred HHHHHHHHHhccCcc-cccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcc
Confidence 3444 3334455554 3467799999999999999877789999999999999999999999999999999999998888
Q ss_pred hhhHHhHHHHHHhhhccchH--HHHHHHH-HHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhc
Q 000827 682 ESFDSVLKPLWKGIRSHRGK--VLAAFLK-AIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVST 758 (1265)
Q Consensus 682 ~~~~~iL~~L~~~l~~~~~~--~la~~l~-a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~ 758 (1265)
.+|+.+...+|+...+.... .-+.++. -+..++ .+....+.++++|+.|-..+...+...|.-+++.+.-+-..
T Consensus 121 ~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIV---te~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~ 197 (675)
T KOG0212|consen 121 VYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIV---TESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV 197 (675)
T ss_pred cchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhc---cccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC
Confidence 99999999999988775422 1111111 111111 01112445666777776666655666666666555432221
Q ss_pred cCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHHHHHhcCCChhHHHHHHHHHHHHHHh
Q 000827 759 EGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVAN 838 (1265)
Q Consensus 759 ~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~ 838 (1265)
|..--=..+ +++++.+...+.|.+..+|..+-.++..++..
T Consensus 198 ----P~~~m~~yl-----------------------------------~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e 238 (675)
T KOG0212|consen 198 ----PDLEMISYL-----------------------------------PSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE 238 (675)
T ss_pred ----CcHHHHhcc-----------------------------------hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 111000011 23455566677888899998877777777766
Q ss_pred hCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHH-HHHHHHHHHH
Q 000827 839 LGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAK-VRQQAADLIS 917 (1265)
Q Consensus 839 lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~-VR~~A~~~lg 917 (1265)
+...-. ..-....++.+...+++..++-...++.=+..++...|..+-+|++.++..+++++.|..++ ++..+...-+
T Consensus 239 I~s~P~-s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~ 317 (675)
T KOG0212|consen 239 IRSSPS-SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNG 317 (675)
T ss_pred HhcCcc-ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHH
Confidence 533210 00000112222223322111112344555556666677889999999999999999998884 8887777766
Q ss_pred HHHHHHhhcch-HHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHH
Q 000827 918 RIAVVMKQCHE-EQL-MGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQEN 995 (1265)
Q Consensus 918 ~La~~l~~~~~-~~l-l~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ 995 (1265)
.+...+..... +++ +..++.++..++.++..+.+-.++.=+..+-...+. .+.-+.++|.++|+..|.|++..|-..
T Consensus 318 ~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~sd~vvl~ 396 (675)
T KOG0212|consen 318 LLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDRSDEVVLL 396 (675)
T ss_pred HHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCchhHHHHH
Confidence 66655543221 111 457788888888988888999999888888888855 455688999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcHHHHHHH
Q 000827 996 CIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATL 1058 (1265)
Q Consensus 996 ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~L 1058 (1265)
+++.++.||.....+ .+ -+.+..||++++.+..-++.-+.-.+..++--+.++.+...+
T Consensus 397 ~L~lla~i~~s~~~~-~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~ 455 (675)
T KOG0212|consen 397 ALSLLASICSSSNSP-NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSI 455 (675)
T ss_pred HHHHHHHHhcCcccc-cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHH
Confidence 999999999884433 33 478889999998886666666666666666666666554443
No 26
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=2.5e-10 Score=143.69 Aligned_cols=373 Identities=18% Similarity=0.239 Sum_probs=242.5
Q ss_pred HHHHHHhhhc-----ccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcch
Q 000827 854 DGILYAFQEQ-----TSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHE 928 (1265)
Q Consensus 854 ~~ll~~l~e~-----~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~ 928 (1265)
|.++|.|.+. +...+..+-.+||+|+..-|..+.||+++++|.|...=-||+.+||.+-...++.|..--+...
T Consensus 955 PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v- 1033 (1702)
T KOG0915|consen 955 PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV- 1033 (1702)
T ss_pred hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH-
Confidence 4466766442 1222456778999999999999999999999999999999999999998888887775322222
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHH---HHHHHHHHh
Q 000827 929 EQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENC---IDLVGRIAD 1005 (1265)
Q Consensus 929 ~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~a---i~~ig~Ia~ 1005 (1265)
+.+++.+..-|+..+.+..-+||++.|-||..+++.-..+.+...++++...++....|-++.||+++ +.+++.|+-
T Consensus 1034 d~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1034 DEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777778888889999999999999998654455666777888888888888889999776 556666655
Q ss_pred hCCCC---cChHHHHHH-HHHHHH--HHhhchHHHHHHHHHHHHHHHHhhCcH------HHHHHHHHhhcccchhhHHH-
Q 000827 1006 RGAEF---VPAREWMRI-CFELLE--MLKAHKKGIRRATVNTFGYIAKAIGPQ------DVLATLLNNLKVQERQNRVC- 1072 (1265)
Q Consensus 1006 ~~~~~---~~~~e~~~i-l~~LL~--~Lk~~~~~iR~~a~~tlg~Ia~~iGp~------~vlp~Ll~~L~~~e~~~R~~- 1072 (1265)
...+. ....+.+.+ |+-|++ .+ +....+|+.++.++-.+++.-|.+ +++|.|++.+..-|.++=+.
T Consensus 1114 r~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1114 RICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred hhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHH
Confidence 42222 222344443 344442 22 457899999999999999988764 57888888776655543211
Q ss_pred HHHHHHH-----------------HHhhcC---Cc-------ccHHHHHhhcCCC-chhHHHHHHHHHHHHHHHhchhhh
Q 000827 1073 TTVAIAI-----------------VAETCS---PF-------TVLPALMNEYRVP-ELNVQNGVLKSLSFLFEYIGEMGK 1124 (1265)
Q Consensus 1073 ~~~ai~~-----------------l~e~~g---p~-------~vlPaL~~~~~~~-~~~vq~~vl~al~~l~~~ig~~~~ 1124 (1265)
++.++.+ ++++++ +| .++|.+....|.. +++.+-++.+.++.+...+|....
T Consensus 1193 s~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt 1272 (1702)
T KOG0915|consen 1193 SLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT 1272 (1702)
T ss_pred HHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC
Confidence 1111111 122211 11 3455555555543 234566777777777776766555
Q ss_pred hhHHhHHHHHHHHhccCChhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhcccCChHHHHHHHHHHHHHHH----
Q 000827 1125 DYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRV---- 1200 (1265)
Q Consensus 1125 ~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~~~s~~v~~~~~~a~~~~~~---- 1200 (1265)
+|...++-.+.-.++|+...+|..-+.++++++.- ..++.++.++.-++.-++...+...+.....+-.+..
T Consensus 1273 P~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~----Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e 1348 (1702)
T KOG0915|consen 1273 PYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKF----SSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQE 1348 (1702)
T ss_pred cchhHHHHHHhhccccccHHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHH
Confidence 56555555555568899999999999999999753 3457778888777777765322211111111111111
Q ss_pred --HhCHHHHHHHHHHhhcchhhHHHHHHHHHhhh
Q 000827 1201 --ALGAAVVLNYCLQGLFHPARKVREVYWKIYNS 1232 (1265)
Q Consensus 1201 --~~g~~~~~~~~~~gl~~~a~~vr~~~~~~~~~ 1232 (1265)
.-....++++++-+.+...+.--..|.+++-.
T Consensus 1349 ~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e 1382 (1702)
T KOG0915|consen 1349 MLKNYASAILPLIFLAMHEEEKANQELWNDVWAE 1382 (1702)
T ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 11124466777766666544444444444443
No 27
>PTZ00429 beta-adaptin; Provisional
Probab=99.52 E-value=1.3e-09 Score=136.81 Aligned_cols=496 Identities=12% Similarity=0.091 Sum_probs=296.4
Q ss_pred HHHHHhccCCCHhHHHHHHHHHHHHHhhcCC--hhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Q 000827 458 MKLLLKVKNGTPPQRKTALRQLTDKAREFGA--GPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKIL 535 (1265)
Q Consensus 458 ~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~--~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll 535 (1265)
..+...|.+.+...|+.|++.+... -.+|. ..+|..++..+.+. +-..|...--.+.+++..-++. +--.+
T Consensus 35 ~ELr~~L~s~~~~~kk~alKkvIa~-mt~G~DvS~LF~dVvk~~~S~--d~elKKLvYLYL~~ya~~~pel----alLaI 107 (746)
T PTZ00429 35 AELQNDLNGTDSYRKKAAVKRIIAN-MTMGRDVSYLFVDVVKLAPST--DLELKKLVYLYVLSTARLQPEK----ALLAV 107 (746)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH-HHCCCCchHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcccChHH----HHHHH
Confidence 3344455677788889999887553 23454 46777777766544 4455655555555544333322 22234
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhC----hhhHHHHHHHH
Q 000827 536 VVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALG----IPALLPFLKAV 611 (1265)
Q Consensus 536 ~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg----~~~Llp~L~~~ 611 (1265)
..+..=+.|+++.+|.-|...|+.+-...-++.++..++..+.|.++|||++|+-|+..+....+ -..+++.|.++
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~L 187 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVEL 187 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHH
Confidence 55666677899999999988888765444456666777888899999999999999999877543 22567888888
Q ss_pred HcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHH
Q 000827 612 CQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPL 691 (1265)
Q Consensus 612 l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L 691 (1265)
+.+.+ ......|+.+|..|+...+..+ ......+..+...+.+-++--+...+..| +.. .|...+....++..+
T Consensus 188 L~D~d-p~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL---~~y-~P~~~~e~~~il~~l 261 (746)
T PTZ00429 188 LNDNN-PVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELL---AAQ-RPSDKESAETLLTRV 261 (746)
T ss_pred hcCCC-ccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHH---Hhc-CCCCcHHHHHHHHHH
Confidence 87766 6678888989988876544322 11222333334444443333333333333 222 233333445777777
Q ss_pred HHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcchhhhhcch
Q 000827 692 WKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDIL 771 (1265)
Q Consensus 692 ~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l~~~il 771 (1265)
...+......+.-+.++++-.+.+++.+.........+...++.. .+.+.+++-.++..+..++... +..+
T Consensus 262 ~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~---P~lf----- 332 (746)
T PTZ00429 262 LPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIF---PNLL----- 332 (746)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC---HHHH-----
Confidence 777766554433333444434444433322222222233334443 4567789999998887776543 3322
Q ss_pred HHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHhcChhhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHH
Q 000827 772 PEFFRNFWVRRMALDRRNYK-QLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEE 850 (1265)
Q Consensus 772 p~l~~~~~~~~~~~d~~~~~-~ll~~~~~la~~~g~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~ 850 (1265)
...++.|..+.. |...++ .-++.+..+++.....+++..+..+..+.+..+++.++.++..++..+.. ...
T Consensus 333 ~~~~~~Ff~~~~--Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~------~a~ 404 (746)
T PTZ00429 333 RTNLDSFYVRYS--DPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS------VAP 404 (746)
T ss_pred HHHHHhhhcccC--CcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH------HHH
Confidence 223333322221 222233 33577778888777788888888888888899999999999998866532 233
Q ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHhhcc
Q 000827 851 LLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRL---NNKSAKVRQQAADLISRIAVVMKQCH 927 (1265)
Q Consensus 851 ~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L---~d~~~~VR~~A~~~lg~La~~l~~~~ 927 (1265)
.+++.++..+.. ..+....++..+..|....... .+++.|...+ .=.++..|.+.+|.||.++..+..+.
T Consensus 405 ~cV~~Ll~ll~~-~~~~v~e~i~vik~IlrkyP~~------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~ 477 (746)
T PTZ00429 405 DCANLLLQIVDR-RPELLPQVVTAAKDIVRKYPEL------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGK 477 (746)
T ss_pred HHHHHHHHHhcC-CchhHHHHHHHHHHHHHHCccH------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHH
Confidence 455555555532 1122223444555554433322 1344444332 12468899999999999998776542
Q ss_pred hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHh-c-CCCHHHHHHHHHHHH
Q 000827 928 EEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPIL-K-NRHEKVQENCIDLVG 1001 (1265)
Q Consensus 928 ~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L-~-~~~~~Vre~ai~~ig 1001 (1265)
.++..+ .+.+.++.++|+..++.+...+.-... . -...++..++..+ + +.+..||..|..-..
T Consensus 478 --~~L~~~----i~~f~~E~~~VqlqlLta~vKlfl~~p-~----~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~r 542 (746)
T PTZ00429 478 --DIIQRF----IDTIMEHEQRVQLAILSAAVKMFLRDP-Q----GMEPQLNRVLETVTTHSDDPDVRDRAFAYWR 542 (746)
T ss_pred --HHHHHH----HhhhccCCHHHHHHHHHHHHHHHhcCc-H----HHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 233333 344456788999999888888765431 1 2355666666544 3 456789887765443
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.44 E-value=7.4e-10 Score=138.39 Aligned_cols=472 Identities=13% Similarity=0.143 Sum_probs=293.6
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHhc--hHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhChhhHHHHHHHH
Q 000827 534 ILVVIEPLLIDEDYYARVEGREIISNLSKAAG--LATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAV 611 (1265)
Q Consensus 534 Ll~~i~~lL~ded~~VR~~a~~il~~La~~~G--l~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~~ 611 (1265)
++.-+..++...+...+..+-..++.+..... +--++.+++.++.++++++|..|-++++.+...--.+.+++.+...
T Consensus 43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~l 122 (526)
T PF01602_consen 43 LFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKL 122 (526)
T ss_dssp THHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHH
Confidence 34444566667888888888777777665432 2234578889999999999999999999887553368889999999
Q ss_pred HcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccc-hhhhHHhHHH
Q 000827 612 CQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYG-IESFDSVLKP 690 (1265)
Q Consensus 612 l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~-~~~~~~iL~~ 690 (1265)
+.++. +..|+.|+.++.++....+..+... +++.+.+.+.|.++.|+.+|+.++..+ ...+.. ...+..++..
T Consensus 123 l~~~~-~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~ 196 (526)
T PF01602_consen 123 LSDPS-PYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRI 196 (526)
T ss_dssp HHSSS-HHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHH
T ss_pred hcCCc-hHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHH
Confidence 99877 8999999999999887744322221 688889999999999999999999888 111111 1233444555
Q ss_pred HHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcchhhhhcc
Q 000827 691 LWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDI 770 (1265)
Q Consensus 691 L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l~~~i 770 (1265)
|.+.+.....-....+++.+..+.+.-..... -..+++.+...+++.+..+.-.+..++..+... .. +...+
T Consensus 197 L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~---~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~----~~-~~~~~ 268 (526)
T PF01602_consen 197 LCQLLSDPDPWLQIKILRLLRRYAPMEPEDAD---KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS----PE-LLQKA 268 (526)
T ss_dssp HHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----HH-HHHHH
T ss_pred hhhcccccchHHHHHHHHHHHhcccCChhhhh---HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc----hH-HHHhh
Confidence 55444444444445555655554443222110 034667777777655555554444444433221 11 12233
Q ss_pred hHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHhcCh-hhhHHHHHHHhc-CCChhHHHHHHHHHHHHHHhhCCCCchhH
Q 000827 771 LPEFFRNFWVRRMALDRRNYK-QLVETTVEIANKVGV-ADIVGRIVEDLK-DESEPYRRMVMETIEKVVANLGASDIDAR 847 (1265)
Q Consensus 771 lp~l~~~~~~~~~~~d~~~~~-~ll~~~~~la~~~g~-~~il~~i~~~l~-d~~~~vR~~a~~~l~~ii~~lg~~~~~~~ 847 (1265)
++.+.+.+ .....+++ .+++++..++..... -.........+. +++..+|..+++.+..++.. .
T Consensus 269 ~~~L~~lL-----~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~--------~ 335 (526)
T PF01602_consen 269 INPLIKLL-----SSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANE--------S 335 (526)
T ss_dssp HHHHHHHH-----TSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--H--------H
T ss_pred HHHHHHHh-----hcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccc--------c
Confidence 44443322 11122233 344555555444300 011122233444 77889999999888877643 2
Q ss_pred HHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhc
Q 000827 848 LEELLIDGILYAFQEQTS-DDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQC 926 (1265)
Q Consensus 848 ~~~~ll~~ll~~l~e~~~-ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~ 926 (1265)
....+++.++..+.+..+ +-+..++.+++.++....... ...+.+++.+++.....+...++..+..+.......
T Consensus 336 n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~----~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~ 411 (526)
T PF01602_consen 336 NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA----EWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL 411 (526)
T ss_dssp HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH----HHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT
T ss_pred chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH----HHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh
Confidence 233466666666644322 236678888888888765544 445555668888877777777777766665432211
Q ss_pred chHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000827 927 HEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 927 ~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~ 1006 (1265)
.+..+..|...+.. -..++++..++|.+++.++.+.. .. ....++..+.+.+...+..+|...+.++..+...
T Consensus 412 -~~~~l~~L~~~l~~---~~~~~~~~~~~wilGEy~~~~~~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 412 -REKILKKLIELLED---ISSPEALAAAIWILGEYGELIEN--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKR 484 (526)
T ss_dssp -HHHHHHHHHHHHTS---SSSHHHHHHHHHHHHHHCHHHTT--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHH---hhHHHHHHHHHhhhcccCCcccc--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhh
Confidence 13344445444322 35678999999999999987744 22 5678888888888888889999999999999987
Q ss_pred CCCCcChHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHH
Q 000827 1007 GAEFVPAREWMRICFELLEMLK--AHKKGIRRATVNTFGYIA 1046 (1265)
Q Consensus 1007 ~~~~~~~~e~~~il~~LL~~Lk--~~~~~iR~~a~~tlg~Ia 1046 (1265)
.+..-.. ..++..+....+ +.+..+|.-|...+..+-
T Consensus 485 ~~~~~~~---~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 485 NPENEVQ---NEILQFLLSLATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp SCSTTHH---HHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred CCchhhH---HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence 5431111 144445555555 568889988887776553
No 29
>PRK09687 putative lyase; Provisional
Probab=99.32 E-value=1.7e-10 Score=130.15 Aligned_cols=250 Identities=15% Similarity=0.158 Sum_probs=181.2
Q ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 000827 856 ILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHL 935 (1265)
Q Consensus 856 ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L 935 (1265)
+...+.+....+|..++.+|+.+ |. +.+++.+..+++++++.||..|+++||+|...-.. ....++.|
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~----~~------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--~~~a~~~L 95 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLR----GG------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--QDNVFNIL 95 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhc----Cc------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--hHHHHHHH
Confidence 33444333344566666666643 22 45677777889999999999999999997531100 01233333
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHH
Q 000827 936 GVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPARE 1015 (1265)
Q Consensus 936 ~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e 1015 (1265)
... .+.|+++.||.+++.+|+.+.... ..+...++..+...+.+.+..||..++.++|.+...
T Consensus 96 ~~l---~~~D~d~~VR~~A~~aLG~~~~~~-----~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~--------- 158 (280)
T PRK09687 96 NNL---ALEDKSACVRASAINATGHRCKKN-----PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE--------- 158 (280)
T ss_pred HHH---HhcCCCHHHHHHHHHHHhcccccc-----cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH---------
Confidence 322 258899999999999999985321 112455677777888899999999999999866421
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHh
Q 000827 1016 WMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMN 1095 (1265)
Q Consensus 1016 ~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~ 1095 (1265)
..+..|+..|++.+..+|..|+.+||.+ ..+...+.+.|+..|.+.+..+|..++.++|-+ +...++|.|++
T Consensus 159 --~ai~~L~~~L~d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~----~~~~av~~Li~ 230 (280)
T PRK09687 159 --AAIPLLINLLKDPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALR----KDKRVLSVLIK 230 (280)
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc----CChhHHHHHHH
Confidence 4667788888999999999999999998 334567889999999999999999999888764 44578999999
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhc-cCChhHHHHHHHHHH
Q 000827 1096 EYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALM-DRDLVHRQTAASAVK 1154 (1265)
Q Consensus 1096 ~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~-d~d~~~Rq~A~~~l~ 1154 (1265)
.++.+. ++-.++.+| |+.+. ...+|.|+..+. +.|..++..|.++++
T Consensus 231 ~L~~~~--~~~~a~~AL-------g~ig~---~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 231 ELKKGT--VGDLIIEAA-------GELGD---KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHcCCc--hHHHHHHHH-------HhcCC---HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 998875 444444444 55444 377888888886 678999998888765
No 30
>PRK09687 putative lyase; Provisional
Probab=99.29 E-value=6.1e-10 Score=125.75 Aligned_cols=254 Identities=11% Similarity=0.093 Sum_probs=184.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCcc
Q 000827 894 CGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPP 973 (1265)
Q Consensus 894 lp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~ 973 (1265)
+..|+..|.|++..||..|++.|+.+.. +..+..+.. .+.++++.||..++++|+.|...- . .
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-------~~~~~~l~~----ll~~~d~~vR~~A~~aLg~lg~~~---~---~ 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-------QDVFRLAIE----LCSSKNPIERDIGADILSQLGMAK---R---C 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-------chHHHHHHH----HHhCCCHHHHHHHHHHHHhcCCCc---c---c
Confidence 3445688899999999999999987653 233333333 357889999999999999974310 0 1
Q ss_pred HHhHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcH
Q 000827 974 IKDLLPRLTPI-LKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQ 1052 (1265)
Q Consensus 974 l~~Llp~Ll~~-L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~ 1052 (1265)
....++.|..+ +++.+..||.+++.++|.+....... ..+.+..+...+.+.+..+|..++.+||.+ |..
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~~~ 158 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVI----NDE 158 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----CCH
Confidence 34677778776 67888999999999999986543222 124555566677888899999999999864 567
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHH
Q 000827 1053 DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTP 1132 (1265)
Q Consensus 1053 ~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~P 1132 (1265)
..++.|+..|++++..+|..++.++|.+ .+ +...+++.|+..+.+++..|+..++.+|+.+ +. ..++|
T Consensus 159 ~ai~~L~~~L~d~~~~VR~~A~~aLg~~-~~-~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~----~~------~~av~ 226 (280)
T PRK09687 159 AAIPLLINLLKDPNGDVRNWAAFALNSN-KY-DNPDIREAFVAMLQDKNEEIRIEAIIGLALR----KD------KRVLS 226 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcC-CC-CCHHHHHHHHHHhcCCChHHHHHHHHHHHcc----CC------hhHHH
Confidence 8899999999999999999999999887 11 1235788999999999889999888888542 22 36677
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhcccCChHHHHHHHHHHHH
Q 000827 1133 LLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEG 1197 (1265)
Q Consensus 1133 lL~~~l~d~d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~~~s~~v~~~~~~a~~~ 1197 (1265)
.|...+.+.+ +|..|+.+++.+ |.+.++..+.+++-. .+++.|+..+.++++.
T Consensus 227 ~Li~~L~~~~--~~~~a~~ALg~i-------g~~~a~p~L~~l~~~---~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 227 VLIKELKKGT--VGDLIIEAAGEL-------GDKTLLPVLDTLLYK---FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHcCCc--hHHHHHHHHHhc-------CCHhHHHHHHHHHhh---CCChhHHHHHHHHHhc
Confidence 7777788766 566777766644 334444444333321 3688888888887753
No 31
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.2e-08 Score=117.78 Aligned_cols=383 Identities=16% Similarity=0.233 Sum_probs=248.5
Q ss_pred hcchhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh------chHHHHHhhccCCCCchHHHHHHHHHHHHHH
Q 000827 522 KLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAA------GLATMIAAMRPDIDNIDEYVRNTTARAFSVV 595 (1265)
Q Consensus 522 ~l~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~------Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~l 595 (1265)
.++.--.+|+.++++.+.+++.|.|..||--|.+.+=|++|.+ -++.+..++.....+.|..||. ++..++.+
T Consensus 73 aLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRL 151 (675)
T KOG0212|consen 73 ALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRL 151 (675)
T ss_pred HhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHH
Confidence 3443334699999999999999999999999999999999986 2456667777777788888887 45555555
Q ss_pred Hhh--------hChhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHH
Q 000827 596 ASA--------LGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITAL 667 (1265)
Q Consensus 596 A~~--------lg~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~ 667 (1265)
.+. +.+++++|.|.+.+...+ +..|..-+.-+..+-..-+-.|..|++.+++.+...|.|++..||..+-.
T Consensus 152 ikdIVte~~~tFsL~~~ipLL~eriy~~n-~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t 230 (675)
T KOG0212|consen 152 IKDIVTESASTFSLPEFIPLLRERIYVIN-PMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDT 230 (675)
T ss_pred HHHhccccccccCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHH
Confidence 443 458999999999988776 67888766666644443344678899999999999999999999999988
Q ss_pred HHHHHHHHhCccchhhhHHhHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCHHHHHH
Q 000827 668 SLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKI 747 (1265)
Q Consensus 668 aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de~~r~~ 747 (1265)
+++.+...+...- .. | ...+++++++..++++++..+..
T Consensus 231 ~l~~fL~eI~s~P-~s---------------------------------~-------d~~~~i~vlv~~l~ss~~~iq~~ 269 (675)
T KOG0212|consen 231 LLSEFLAEIRSSP-SS---------------------------------M-------DYDDMINVLVPHLQSSEPEIQLK 269 (675)
T ss_pred HHHHHHHHHhcCc-cc---------------------------------c-------CcccchhhccccccCCcHHHHHH
Confidence 8887766553110 00 0 11234566777788899999999
Q ss_pred HHHHHHHhhhccCCcchhhhhcchHHHHHHHHHHhhhhhH---HHHHHHHH-HHHH-HHHh-----cChhhhHHHHHHHh
Q 000827 748 VLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDR---RNYKQLVE-TTVE-IANK-----VGVADIVGRIVEDL 817 (1265)
Q Consensus 748 al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~---~~~~~ll~-~~~~-la~~-----~g~~~il~~i~~~l 817 (1265)
++..+.+++...| ...+. ..+..+..++..-...+. ..+.+.+. .+.. +... ++...+++.+...+
T Consensus 270 al~Wi~efV~i~g--~~~l~--~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l 345 (675)
T KOG0212|consen 270 ALTWIQEFVKIPG--RDLLL--YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYL 345 (675)
T ss_pred HHHHHHHHhcCCC--cchhh--hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHh
Confidence 9999999987654 11110 001111111111111111 11222221 1111 1111 22235778888899
Q ss_pred cCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHH
Q 000827 818 KDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTI 897 (1265)
Q Consensus 818 ~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~L 897 (1265)
.+++...|-.+++.+..+....+..-. .+...+.+.++..+.+.++ ...+.+|.-+++.|...-.|++-+.+-.|
T Consensus 346 ~~~~~~tri~~L~Wi~~l~~~~p~ql~--~h~~~if~tLL~tLsd~sd---~vvl~~L~lla~i~~s~~~~~~~~fl~sL 420 (675)
T KOG0212|consen 346 SDDREETRIAVLNWIILLYHKAPGQLL--VHNDSIFLTLLKTLSDRSD---EVVLLALSLLASICSSSNSPNLRKFLLSL 420 (675)
T ss_pred hcchHHHHHHHHHHHHHHHhhCcchhh--hhccHHHHHHHHhhcCchh---HHHHHHHHHHHHHhcCcccccHHHHHHHH
Confidence 999999999999998888887766431 2344667777778865433 35667777777766654444555555555
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 000827 898 KWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIV 962 (1265)
Q Consensus 898 l~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv 962 (1265)
+.+.....--++..+.-.|-+++..+.. +.+...+..+|. ++++-+..+.++.+|..+.
T Consensus 421 L~~f~e~~~~l~~Rg~lIIRqlC~lL~a---E~IYr~~a~ILe---~e~nl~FAstMV~~Ln~iL 479 (675)
T KOG0212|consen 421 LEMFKEDTKLLEVRGNLIIRQLCLLLNA---ERIYRSIADILE---REENLKFASTMVQALNTIL 479 (675)
T ss_pred HHHHhhhhHHHHhhhhHHHHHHHHHhCH---HHHHHHHHHHHh---ccccchHHHHHHHHHHhhh
Confidence 5666655555566666777777766543 334444444442 3445556666666666654
No 32
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.1e-09 Score=126.24 Aligned_cols=295 Identities=17% Similarity=0.185 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHHhchhhhchHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcch----HHHHHHHHHHHHHh
Q 000827 868 ANVMLNGFGAVVNSLGQRVKPYLPQ-ICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHE----EQLMGHLGVVLYEY 942 (1265)
Q Consensus 868 ~~~al~aL~~I~~~lg~~~~p~Lp~-ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~----~~ll~~L~~~L~~~ 942 (1265)
...+--+|..|+.+...+-+-+++. .+|.++.++..++..||++|+|+||.|+..-..|-+ ...+..|+..
T Consensus 127 q~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~---- 202 (514)
T KOG0166|consen 127 QFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRL---- 202 (514)
T ss_pred HHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHH----
Confidence 3345567777877766665555554 778889999999999999999999999853222211 1133334333
Q ss_pred hCCCCH-HHHHHHHHHHHHHHHHhCcccCCcc---HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHH
Q 000827 943 LGEEYP-EVLGSILGALKAIVNVIGMTKMTPP---IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMR 1018 (1265)
Q Consensus 943 L~d~~~-~V~~~al~aL~~lv~~~g~~~l~p~---l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~ 1018 (1265)
+...++ ..+.++.|+|.+++..-.+ .|. +..++|.|...+.+.+..|..-|+.++..|++.+.+.+...--..
T Consensus 203 l~~~~~~~~lRn~tW~LsNlcrgk~P---~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~g 279 (514)
T KOG0166|consen 203 LNKSDKLSMLRNATWTLSNLCRGKNP---SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAG 279 (514)
T ss_pred hccccchHHHHHHHHHHHHHHcCCCC---CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcc
Confidence 344444 5788899999999985432 233 577899999999999999999999999999987665443321135
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcC
Q 000827 1019 ICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYR 1098 (1265)
Q Consensus 1019 il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~ 1098 (1265)
+++.|+++|...+..++..|+.++|.|+. |.+..-..+++. ..+|.|.+.+.
T Consensus 280 vv~~LV~lL~~~~~~v~~PaLRaiGNIvt--G~d~QTq~vi~~--------------------------~~L~~l~~ll~ 331 (514)
T KOG0166|consen 280 VVPRLVDLLGHSSPKVVTPALRAIGNIVT--GSDEQTQVVINS--------------------------GALPVLSNLLS 331 (514)
T ss_pred chHHHHHHHcCCCcccccHHHhhccceee--ccHHHHHHHHhc--------------------------ChHHHHHHHhc
Confidence 67788888888888888899999998753 444333333331 23455555444
Q ss_pred -CCchhHHHHHHHHHHHHHHHhchhhhhhH-HhHHHHHHHHhccCChhHHHHHHHHHHHHHhcccCCCchhHHHHHH---
Q 000827 1099 -VPELNVQNGVLKSLSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLL--- 1173 (1265)
Q Consensus 1099 -~~~~~vq~~vl~al~~l~~~ig~~~~~yi-~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~l--- 1173 (1265)
.+....+..++-+++.|...-.+....++ ..++|.|...+...|...|.-|+++++.++.|.. ...+.+|
T Consensus 332 ~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~-----~~qi~yLv~~ 406 (514)
T KOG0166|consen 332 SSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT-----PEQIKYLVEQ 406 (514)
T ss_pred cCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC-----HHHHHHHHHc
Confidence 34334555666666655431112333344 3678999999999999999999999998876543 2122221
Q ss_pred ---HhhhhhcccCChHHHHHHHHHHHHHHHHh
Q 000827 1174 ---NYVWPNIFETSPHVINAVMEAIEGMRVAL 1202 (1265)
Q Consensus 1174 ---n~l~~~i~~~s~~v~~~~~~a~~~~~~~~ 1202 (1265)
+.+..-+.-+..+++..++++++.+....
T Consensus 407 giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 407 GIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred CCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 11111122356778999999998888644
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.25 E-value=6.8e-10 Score=145.63 Aligned_cols=275 Identities=18% Similarity=0.202 Sum_probs=204.7
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhc
Q 000827 809 IVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKP 888 (1265)
Q Consensus 809 il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p 888 (1265)
.+..+...|.|+++.+|+.++..+..+. .. ..++.|...+.+...++|..++.+|+.+.+....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~----~~--------~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~---- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT----PP--------GFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP---- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc----ch--------hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc----
Confidence 3566778889999999999998777542 11 2344455666555555677888888776543221
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcc
Q 000827 889 YLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMT 968 (1265)
Q Consensus 889 ~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~ 968 (1265)
.+.+...|+++++.||.+|+.+|+.+.. . . ...|...|.|+++.||..++.+|..+- .
T Consensus 686 -----~~~L~~~L~~~d~~VR~~A~~aL~~~~~--~----~------~~~l~~~L~D~d~~VR~~Av~aL~~~~----~- 743 (897)
T PRK13800 686 -----APALRDHLGSPDPVVRAAALDVLRALRA--G----D------AALFAAALGDPDHRVRIEAVRALVSVD----D- 743 (897)
T ss_pred -----hHHHHHHhcCCCHHHHHHHHHHHHhhcc--C----C------HHHHHHHhcCCCHHHHHHHHHHHhccc----C-
Confidence 1345578899999999999999987641 1 0 013455679999999999999999752 1
Q ss_pred cCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 000827 969 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKA 1048 (1265)
Q Consensus 969 ~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~ 1048 (1265)
.+.|+..|.+.+..||..++.+|+.+..... ..+..|+..+++++..+|.+|+.+||.+.
T Consensus 744 ---------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g-- 803 (897)
T PRK13800 744 ---------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELG-- 803 (897)
T ss_pred ---------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcC--
Confidence 1236678899999999999999998865422 12344567778999999999999999863
Q ss_pred hCcHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhHH
Q 000827 1049 IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIY 1128 (1265)
Q Consensus 1049 iGp~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~ 1128 (1265)
.+..+.+.|+..|++++.++|..++.+++.+ +....++.|+..+.+++..||..+..+|+.+ . . -.
T Consensus 804 -~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~----~--~---~~ 869 (897)
T PRK13800 804 -CPPDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDPHLDVRKAAVLALTRW----P--G---DP 869 (897)
T ss_pred -CcchhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCCCHHHHHHHHHHHhcc----C--C---CH
Confidence 2344556788899999999999999888755 3335678999999999999999998888653 1 1 13
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHH
Q 000827 1129 AVTPLLEDALMDRDLVHRQTAASAVKH 1155 (1265)
Q Consensus 1129 ~i~PlL~~~l~d~d~~~Rq~A~~~l~~ 1155 (1265)
...+.|..++.|.|..||+.|+.++.+
T Consensus 870 ~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 870 AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 567788899999999999999988764
No 34
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=8.7e-06 Score=101.26 Aligned_cols=568 Identities=16% Similarity=0.195 Sum_probs=300.2
Q ss_pred ccCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhcCCCCCHHHHH-HHHHHHHHHH---hhcc-hhhhhhHHHHHHHH
Q 000827 464 VKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERH-LLVKVIDRVL---YKLD-ELVRPYVHKILVVI 538 (1265)
Q Consensus 464 lkn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~~~led~~R~-~~v~vi~~l~---~~l~-~~v~p~~~~Ll~~i 538 (1265)
+.+.+ ..|..|+..+...-+--...+.+..||.-+++....++.++ ..+-.+..++ ...+ ..+.||....+..+
T Consensus 185 l~~~~-~~r~~aalllsk~~sR~D~~~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L 263 (1133)
T KOG1943|consen 185 LISSG-ILRRSAALLLSKLFSRTDVKDLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRML 263 (1133)
T ss_pred Hhccc-hhHHHHHHHHHHHcccccHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhh
Confidence 34444 67888887776654322223456777777777655666662 1111222221 1111 23567887777777
Q ss_pred HhhccCCCH--HHHHHHHHHHHHHHHH----------------------------------------------hchHHHH
Q 000827 539 EPLLIDEDY--YARVEGREIISNLSKA----------------------------------------------AGLATMI 570 (1265)
Q Consensus 539 ~~lL~ded~--~VR~~a~~il~~La~~----------------------------------------------~Gl~~~~ 570 (1265)
..+--+.+- .+|.--.+++..+.-. .+++.++
T Consensus 264 ~~~~~~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vi 343 (1133)
T KOG1943|consen 264 SVCRESNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVI 343 (1133)
T ss_pred cccccccccHhHHHHHHHHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHH
Confidence 554433332 3333333333311100 0122344
Q ss_pred HhhccCCCCchHHHHHHHHHHHHHHHhhhChh---hHHHHHHH---HHcCCchhHHHHHHHHHHHHHHHHhCCCc-ch-h
Q 000827 571 AAMRPDIDNIDEYVRNTTARAFSVVASALGIP---ALLPFLKA---VCQSKKSWQARHTGIKIVQQIAILIGCAV-LP-H 642 (1265)
Q Consensus 571 ~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg~~---~Llp~L~~---~l~s~~s~~~R~aal~~L~~i~~~~g~~l-~p-~ 642 (1265)
+-|...+.+.|..||-++|..++.+++.+.+. +++.-... -+.+..+| |+|..+|+.++ +.++ .| -
T Consensus 344 e~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aW---HgacLaLAELA---~rGlLlps~ 417 (1133)
T KOG1943|consen 344 EHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAW---HGACLALAELA---LRGLLLPSL 417 (1133)
T ss_pred HHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHH---HHHHHHHHHHH---hcCCcchHH
Confidence 55556666777789999999999999998732 22222222 22334457 68888887655 3333 33 5
Q ss_pred HHHHHHHHHhhcCCC--------ChhhHHHHHHHHHHHHHHhCccchhhh-HHhHHHHHHh-hhcc----chHHHHHHHH
Q 000827 643 LRSLVEIIEHGLNDE--------NQKVRTITALSLAALAEAAAPYGIESF-DSVLKPLWKG-IRSH----RGKVLAAFLK 708 (1265)
Q Consensus 643 L~~ll~~l~~~L~De--------~~~VR~~A~~aL~~lae~~~p~~~~~~-~~iL~~L~~~-l~~~----~~~~la~~l~ 708 (1265)
+..++|.|.+++.=+ -..||.+||-.+-+++.+-.|...+.| ..+...|+-. +-|. |..+.+++.+
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 789999999988643 257999999999999988766433322 2233333322 2232 2235666666
Q ss_pred HHhh---------hhhhhh--------Hhh---------hhhhHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhhccCC
Q 000827 709 AIGF---------IIPLMD--------ALY---------ASYYTKEVMFILIRE-FQSPDEEMKKIVLKVVKQCVSTEGV 761 (1265)
Q Consensus 709 a~~~---------lip~~~--------~~~---------~~~~~~~im~~L~~~-l~~~de~~r~~al~~l~~~~~~~~~ 761 (1265)
.+|- ++...+ +-| ...|..-+++.|+.. ..+=|..+|..+..++.++....
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~-- 575 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE-- 575 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh--
Confidence 6651 111111 001 112344455555543 55568888898888888866554
Q ss_pred cchhhhhcchHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHH-HhcCh-hhhHHH---HHHHhcCCChhHHH---HHH
Q 000827 762 EADYIRSDILPEFFRNFWVRRMALDRR----NYKQLVETTVEIA-NKVGV-ADIVGR---IVEDLKDESEPYRR---MVM 829 (1265)
Q Consensus 762 ~~~~l~~~ilp~l~~~~~~~~~~~d~~----~~~~ll~~~~~la-~~~g~-~~il~~---i~~~l~d~~~~vR~---~a~ 829 (1265)
++++.+..+|++++.+.... ...+- ..+.++..+-.+. .-.+. +..+.. +...+-|. ..+|. -..
T Consensus 576 -pk~~a~~~L~~lld~~ls~~-~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~-~~~rg~~~lmr 652 (1133)
T KOG1943|consen 576 -PKYLADYVLPPLLDSTLSKD-ASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDR-YFYRGQGTLMR 652 (1133)
T ss_pred -HHhhcccchhhhhhhhcCCC-hHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHH-HhccchHHHHH
Confidence 67766677888887663211 00110 0011111111111 00000 000000 11111110 11232 112
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhh-cccc--hHHHHHHHHHHHHHHhchhhhchHHH-HHHHHHHHhcCC-
Q 000827 830 ETIEKVVANLGASDIDARLEELLIDGILYAFQE-QTSD--DANVMLNGFGAVVNSLGQRVKPYLPQ-ICGTIKWRLNNK- 904 (1265)
Q Consensus 830 ~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e-~~~e--d~~~al~aL~~I~~~lg~~~~p~Lp~-ilp~Ll~~L~d~- 904 (1265)
.+..+.+..+...... -...-++......+.+ .+.. -+..+..+++.++...-. ..++..+ ++...+..+.+.
T Consensus 653 ~~~~~~Ie~~s~s~~~-~~~~~v~e~~~~ll~~~l~~~n~i~~~av~av~~l~s~y~~-~d~~~~~~li~~~ls~~~~~~ 730 (1133)
T KOG1943|consen 653 QATLKFIEQLSLSKDR-LFQDFVIENWQMLLAQNLTLPNQIRDAAVSAVSDLVSTYVK-ADEGEEAPLITRYLSRLTKCS 730 (1133)
T ss_pred HHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh-cCchhhhHHHHHHHHHhcCch
Confidence 2333444443322210 0000011111111100 1111 145677777777764221 1122222 444444555555
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHH
Q 000827 905 SAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYL-GEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTP 983 (1265)
Q Consensus 905 ~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L-~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~ 983 (1265)
..++|.-..-++|.+-..+-.+. +-.++...+++.. .|..++-|...+.|+..++..++...+...+.+++..|+.
T Consensus 731 ~~~~r~g~~lal~~lp~~~i~~~---~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~ 807 (1133)
T KOG1943|consen 731 EERIRRGLILALGVLPSELIHRH---LQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLN 807 (1133)
T ss_pred HHHHHHHHHHHHccCcHHhhchH---HHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 78888888777777664433221 2223333333333 2336788999999999999998866666677888888888
Q ss_pred HhcCCC--------HHHHHHHHHHHHHHHhh--CCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 000827 984 ILKNRH--------EKVQENCIDLVGRIADR--GAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKA 1048 (1265)
Q Consensus 984 ~L~~~~--------~~Vre~ai~~ig~Ia~~--~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~ 1048 (1265)
.|.|.. .-||++|+.++..+-.. +++++......+++.-++...-+....+|.++..|+..|...
T Consensus 808 ~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 808 ALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred HHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 887632 45999999999988766 466666653444444455444445667799999998888654
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=99.22 E-value=1.2e-06 Score=110.49 Aligned_cols=493 Identities=15% Similarity=0.150 Sum_probs=259.6
Q ss_pred ccCCCCchHHH-HHHHHHHHHHHHhhhChhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchh-HHHHHHHHH
Q 000827 574 RPDIDNIDEYV-RNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPH-LRSLVEIIE 651 (1265)
Q Consensus 574 ~~~l~~~d~~v-R~~aa~~l~~lA~~lg~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~-L~~ll~~l~ 651 (1265)
+..+.+.+... +++.-++|+.+........+++-+..++++++ ...|+-++..+...+. ..|. .--.+..|.
T Consensus 38 r~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~-----~~pelalLaINtl~ 111 (746)
T PTZ00429 38 QNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTD-LELKKLVYLYVLSTAR-----LQPEKALLAVNTFL 111 (746)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcc-----cChHHHHHHHHHHH
Confidence 33344444443 33333444444433336667776666666665 5566655544443321 1232 223466666
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHH
Q 000827 652 HGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMF 731 (1265)
Q Consensus 652 ~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~ 731 (1265)
+-+.|+++.||..|+++++.+-.. + ++ +.++.
T Consensus 112 KDl~d~Np~IRaLALRtLs~Ir~~------~------------------------------i~------------e~l~~ 143 (746)
T PTZ00429 112 QDTTNSSPVVRALAVRTMMCIRVS------S------------------------------VL------------EYTLE 143 (746)
T ss_pred HHcCCCCHHHHHHHHHHHHcCCcH------H------------------------------HH------------HHHHH
Confidence 777777777777777766654211 0 11 11233
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhhhccCCcchhhh-hcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhH
Q 000827 732 ILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIR-SDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIV 810 (1265)
Q Consensus 732 ~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l~-~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il 810 (1265)
.+.+.+.+.++.+|+.|+-++.++.... ++.+. ..+ +
T Consensus 144 ~lkk~L~D~~pYVRKtAalai~Kly~~~---pelv~~~~~---------------------------------------~ 181 (746)
T PTZ00429 144 PLRRAVADPDPYVRKTAAMGLGKLFHDD---MQLFYQQDF---------------------------------------K 181 (746)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhC---cccccccch---------------------------------------H
Confidence 4556677888889988877777665432 21110 001 1
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchH
Q 000827 811 GRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYL 890 (1265)
Q Consensus 811 ~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~L 890 (1265)
..+...+.|.++.+...++.++..|....+.. . ......+..++..+.+. .+| .-+..|..++..... -..-.
T Consensus 182 ~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l--~l~~~~~~~Ll~~L~e~--~EW-~Qi~IL~lL~~y~P~-~~~e~ 254 (746)
T PTZ00429 182 KDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-I--ESSNEWVNRLVYHLPEC--NEW-GQLYILELLAAQRPS-DKESA 254 (746)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-h--HHHHHHHHHHHHHhhcC--ChH-HHHHHHHHHHhcCCC-CcHHH
Confidence 11222244666666666666665554332211 0 11122233334444321 123 111222222221111 11223
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccC
Q 000827 891 PQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKM 970 (1265)
Q Consensus 891 p~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l 970 (1265)
..++..+.+.|++.++.|--+|+.++-.+...+.......++..+...+.. |....++++-.++..+..++... +..|
T Consensus 255 ~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~-L~ss~~eiqyvaLr~I~~i~~~~-P~lf 332 (746)
T PTZ00429 255 ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLT-LSRRDAETQYIVCKNIHALLVIF-PNLL 332 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHH-hhCCCccHHHHHHHHHHHHHHHC-HHHH
Confidence 467778889999999999999999988776543211112344444444432 34567889999999998888754 3233
Q ss_pred CccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhC
Q 000827 971 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIG 1050 (1265)
Q Consensus 971 ~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iG 1050 (1265)
.++ +..+.-..+++.+ ||...++++-.++.... ...|+.+|.+...+.+..+++.++.++|.+|..+.
T Consensus 333 ~~~----~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~N-------v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~ 400 (746)
T PTZ00429 333 RTN----LDSFYVRYSDPPF-VKLEKLRLLLKLVTPSV-------APEILKELAEYASGVDMVFVVEVVRAIASLAIKVD 400 (746)
T ss_pred HHH----HHhhhcccCCcHH-HHHHHHHHHHHHcCccc-------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh
Confidence 322 2223333345554 89999999998886522 34788888888887788999999999999998764
Q ss_pred c--HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcC---CCchhHHHHHHHHHHHHHHHhchhhhh
Q 000827 1051 P--QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYR---VPELNVQNGVLKSLSFLFEYIGEMGKD 1125 (1265)
Q Consensus 1051 p--~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~---~~~~~vq~~vl~al~~l~~~ig~~~~~ 1125 (1265)
. ..++..|++.++....-+. .+...+-.+.+......+++.|+..+. ..+...+.+++-.++...+.+. .+.+
T Consensus 401 ~~a~~cV~~Ll~ll~~~~~~v~-e~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~-~a~~ 478 (746)
T PTZ00429 401 SVAPDCANLLLQIVDRRPELLP-QVVTAAKDIVRKYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIE-NGKD 478 (746)
T ss_pred HHHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHh-hHHH
Confidence 3 3577777777654322122 222333333332222235666665431 2222344443333333222221 1222
Q ss_pred hHHhHHHHHHHHhccCChhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhc--ccCChHHHHHHHHH
Q 000827 1126 YIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNI--FETSPHVINAVMEA 1194 (1265)
Q Consensus 1126 yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i--~~~s~~v~~~~~~a 1194 (1265)
++.. ++ +-+.+++..+|....+++-.+.+... +.....+..++... .+.+++||....--
T Consensus 479 ~L~~---~i-~~f~~E~~~VqlqlLta~vKlfl~~p-----~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y 540 (746)
T PTZ00429 479 IIQR---FI-DTIMEHEQRVQLAILSAAVKMFLRDP-----QGMEPQLNRVLETVTTHSDDPDVRDRAFAY 540 (746)
T ss_pred HHHH---HH-hhhccCCHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Confidence 2222 22 33455677788777777666655544 11223333444332 34778999887543
No 36
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.20 E-value=1.8e-09 Score=141.72 Aligned_cols=275 Identities=16% Similarity=0.148 Sum_probs=205.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCc
Q 000827 893 ICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTP 972 (1265)
Q Consensus 893 ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p 972 (1265)
.++.|+..|+|+++.||..|+..|+.+.. +.. ++.|...|.|+++.||..++.+|..+.+....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~----~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~----- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-------PGF----GPALVAALGDGAAAVRRAAAEGLRELVEVLPP----- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhH----HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-----
Confidence 44566688999999999999999998652 222 34445567899999999999999988653321
Q ss_pred cHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcH
Q 000827 973 PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQ 1052 (1265)
Q Consensus 973 ~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~ 1052 (1265)
.+.|...|++.+..||.+++.+++.+... . ...|+..|++.+..+|.+|+.+|+.+. ..
T Consensus 686 -----~~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~----------~~~l~~~L~D~d~~VR~~Av~aL~~~~----~~ 744 (897)
T PRK13800 686 -----APALRDHLGSPDPVVRAAALDVLRALRAG--D----------AALFAAALGDPDHRVRIEAVRALVSVD----DV 744 (897)
T ss_pred -----hHHHHHHhcCCCHHHHHHHHHHHHhhccC--C----------HHHHHHHhcCCCHHHHHHHHHHHhccc----Cc
Confidence 24567778889999999999999987521 1 113456789999999999999999862 22
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHH
Q 000827 1053 DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTP 1132 (1265)
Q Consensus 1053 ~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~P 1132 (1265)
+.|+..+.+++..+|...+.+++.+...- ...+|.|+..+++++..|+..++.+|..+ +.. ..+.+
T Consensus 745 ---~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--~~~~~~L~~ll~D~d~~VR~aA~~aLg~~----g~~-----~~~~~ 810 (897)
T PRK13800 745 ---ESVAGAATDENREVRIAVAKGLATLGAGG--APAGDAVRALTGDPDPLVRAAALAALAEL----GCP-----PDDVA 810 (897)
T ss_pred ---HHHHHHhcCCCHHHHHHHHHHHHHhcccc--chhHHHHHHHhcCCCHHHHHHHHHHHHhc----CCc-----chhHH
Confidence 34566788899999999999888764321 12368888888899999999998888643 221 23345
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhcccCChHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 000827 1133 LLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCL 1212 (1265)
Q Consensus 1133 lL~~~l~d~d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~~~s~~v~~~~~~a~~~~~~~~g~~~~~~~~~ 1212 (1265)
.|..++.|.|..+|..|+.++..+ ++++++ ..+.+.+-++++.||.++..++..+ .|+......+.
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l-------~~~~a~----~~L~~~L~D~~~~VR~~A~~aL~~~---~~~~~a~~~L~ 876 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGA-------AADVAV----PALVEALTDPHLDVRKAAVLALTRW---PGDPAARDALT 876 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhc-------cccchH----HHHHHHhcCCCHHHHHHHHHHHhcc---CCCHHHHHHHH
Confidence 577789999999999999988754 223333 3444555689999999999999875 34555677777
Q ss_pred HhhcchhhHHHHHHHHHhhh
Q 000827 1213 QGLFHPARKVREVYWKIYNS 1232 (1265)
Q Consensus 1213 ~gl~~~a~~vr~~~~~~~~~ 1232 (1265)
..|.++...||....+.++.
T Consensus 877 ~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 877 TALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHhCCCHHHHHHHHHHHhh
Confidence 99999999999998887653
No 37
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=5.1e-05 Score=95.76 Aligned_cols=354 Identities=13% Similarity=0.169 Sum_probs=187.0
Q ss_pred HHHHhhhcccchHHHHHHHHHHHHHHh---c---h---hhhchHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHHH
Q 000827 856 ILYAFQEQTSDDANVMLNGFGAVVNSL---G---Q---RVKPYLPQICGTIKWRLNNKSA------KVRQQAADLISRIA 920 (1265)
Q Consensus 856 ll~~l~e~~~ed~~~al~aL~~I~~~l---g---~---~~~p~Lp~ilp~Ll~~L~d~~~------~VR~~A~~~lg~La 920 (1265)
++.++... .+-|..++++|..+++.. . + .+..|-...+|.+++.-.-.+. ..|......+. .
T Consensus 523 l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~--~ 599 (1176)
T KOG1248|consen 523 LGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIR--V 599 (1176)
T ss_pred HHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHH--H
Confidence 34444332 244778888888888864 1 1 1233334456666665544332 22322222221 1
Q ss_pred HHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCC-CHHHHHHHHHH
Q 000827 921 VVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDL 999 (1265)
Q Consensus 921 ~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~-~~~Vre~ai~~ 999 (1265)
..+..++ .++...|...+-+...+.+..++......+-.+...++.-.=..++..+. .+.+.+.+. +.++|..+...
T Consensus 600 ~~~~~t~-~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrl 677 (1176)
T KOG1248|consen 600 DYFTVTP-TDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRL 677 (1176)
T ss_pred HHhhccc-HHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHH
Confidence 2222233 23334444444333344433444444444444444443322233445555 444544444 68899999999
Q ss_pred HHHHHhh--CCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcH--HHHHHHHHhhcccchhhHHHHHH
Q 000827 1000 VGRIADR--GAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQ--DVLATLLNNLKVQERQNRVCTTV 1075 (1265)
Q Consensus 1000 ig~Ia~~--~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~--~vlp~Ll~~L~~~e~~~R~~~~~ 1075 (1265)
+..+... +..++.. ....|...|++.+++.....|...+.|+..|.+.++.+ ++++.++.+.
T Consensus 678 L~~l~~~~s~~~~~~q-~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~Ev------------- 743 (1176)
T KOG1248|consen 678 LEELSSSPSGEGLVEQ-RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEV------------- 743 (1176)
T ss_pred HHHHhcCCchhhHHHH-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------------
Confidence 9999887 2223222 24455556667777777888899999999998877743 2344333220
Q ss_pred HHHHHHhhcCCcccHHHHHhhcCCCchhHHHHHHHHHHHHH--HHh---chh-hhhhHHhHHHHHHHHhccCChhHHHHH
Q 000827 1076 AIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLF--EYI---GEM-GKDYIYAVTPLLEDALMDRDLVHRQTA 1149 (1265)
Q Consensus 1076 ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~vl~al~~l~--~~i---g~~-~~~yi~~i~PlL~~~l~d~d~~~Rq~A 1149 (1265)
++. ++..+..-+...+++|-+|. ... |+. ...-+..+++.|...+......++...
T Consensus 744 -----------------IL~-~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~ 805 (1176)
T KOG1248|consen 744 -----------------ILS-LKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD 805 (1176)
T ss_pred -----------------HHh-cccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence 001 11111112222333333322 111 211 133455666666666665554444443
Q ss_pred HHHHHHHHhcccCCCchhHHHHHHHhhhhhcccCChHHHHHHHHHHHHHHHHhCHHHHHHHH---HHh---hcch-hhHH
Q 000827 1150 ASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYC---LQG---LFHP-ARKV 1222 (1265)
Q Consensus 1150 ~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~~~s~~v~~~~~~a~~~~~~~~g~~~~~~~~---~~g---l~~~-a~~v 1222 (1265)
+-++.|+.....+...++.+..+++.+--.|-..+++++.+++..+..+........+-+++ +.. +-|. ..++
T Consensus 806 Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~ 885 (1176)
T KOG1248|consen 806 IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKV 885 (1176)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHH
Confidence 55666776666555556666677777777777899999999999998888766554443333 211 3454 4455
Q ss_pred HHHHHHHhhhhh-ccccCcceeccC
Q 000827 1223 REVYWKIYNSLY-IGAQDALVAAYP 1246 (1265)
Q Consensus 1223 r~~~~~~~~~~~-~~~~~~~~~~~p 1246 (1265)
|.--.-++..+. ..+.+.|-+|+|
T Consensus 886 r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 886 RKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 544444433332 445666777777
No 38
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.3e-06 Score=103.88 Aligned_cols=620 Identities=15% Similarity=0.119 Sum_probs=310.9
Q ss_pred hhhhhhHHHHHHHHHhhccCCCHHHH--HHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhChh
Q 000827 525 ELVRPYVHKILVVIEPLLIDEDYYAR--VEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIP 602 (1265)
Q Consensus 525 ~~v~p~~~~Ll~~i~~lL~ded~~VR--~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg~~ 602 (1265)
.++.||+..+++.+..........+. -.+.+.+..|.+..|..+++..+ .|.-.+ +.
T Consensus 64 ~LLDp~L~~~v~~L~~~v~~~~~d~~~~~l~~e~ly~l~kvrgyK~v~k~f----Ph~V~~-----------------Le 122 (1133)
T KOG1943|consen 64 HLLDPHLESIVPNLLDIVRKFTIDLGELHLAFEYLYILCKVRGYKAVLKLF----PHQVSD-----------------LE 122 (1133)
T ss_pred hhccchHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhccchhhHHhC----CcHHHH-----------------HH
Confidence 34456666666655554433222122 23445566666666654433322 111000 34
Q ss_pred hHHHHHHHHHcCC---chhHHHHHHHHHHHHHHHHhCCC---------cchh--HHHHHHHHHhhcCCCChhhHHHHHHH
Q 000827 603 ALLPFLKAVCQSK---KSWQARHTGIKIVQQIAILIGCA---------VLPH--LRSLVEIIEHGLNDENQKVRTITALS 668 (1265)
Q Consensus 603 ~Llp~L~~~l~s~---~s~~~R~aal~~L~~i~~~~g~~---------l~p~--L~~ll~~l~~~L~De~~~VR~~A~~a 668 (1265)
.++..|. -+++ ..|..|...+.=+..++.. .-. ..|- +..|+..++..+.... ..|.+|+..
T Consensus 123 ~il~lL~--~~npss~~~~~~ryilLlWLsvllln-PF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~~-~~r~~aall 198 (1133)
T KOG1943|consen 123 PILDLLE--RQNPSSFSDWETRYILLLWLSVLLLN-PFDLSRLDESLTFDKTNVILRILSFFENYLISSG-ILRRSAALL 198 (1133)
T ss_pred HHHHHHh--ccCcchHHHHHHHHHHHHHHHHHHcC-CCcccccCcccccCCchHHHHHHHHHHHHHhccc-hhHHHHHHH
Confidence 5555555 1221 2388888777777655432 111 2233 5566666655555433 788888888
Q ss_pred HHHHHHHhCccchhhhHHhHHHHHHhhhccchH--HHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCH--HH
Q 000827 669 LAALAEAAAPYGIESFDSVLKPLWKGIRSHRGK--VLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDE--EM 744 (1265)
Q Consensus 669 L~~lae~~~p~~~~~~~~iL~~L~~~l~~~~~~--~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de--~~ 744 (1265)
++.+..- +++.+.+..+|..++..-..+... .+..++.++..+..++.....-+|....+..|-..-.+.+. -.
T Consensus 199 lsk~~sR--~D~~~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~ll 276 (1133)
T KOG1943|consen 199 LSKLFSR--TDVKDLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLL 276 (1133)
T ss_pred HHHHccc--ccHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHH
Confidence 8876532 445555666777766554443222 22333333333333333322223333334333322222222 23
Q ss_pred HHHHHHHHHHhhhc--cCCcchhhhhcchHHHHHH------------HHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhH
Q 000827 745 KKIVLKVVKQCVST--EGVEADYIRSDILPEFFRN------------FWVRRMALDRRNYKQLVETTVEIANKVGVADIV 810 (1265)
Q Consensus 745 r~~al~~l~~~~~~--~~~~~~~l~~~ilp~l~~~------------~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il 810 (1265)
|+...+++..+--. ..-.+.+-|..--..+..+ .... ..++.+.....++ .++
T Consensus 277 rKllvKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~-~d~e~edv~eivE------------~vi 343 (1133)
T KOG1943|consen 277 RKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQ-DDDEGEDVPEIVE------------FVI 343 (1133)
T ss_pred HHHHHHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCccccccc-ccccccccHHHHH------------HHH
Confidence 33334444322100 0000111000000000000 0000 0001111222222 356
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcc-cchHHHHHHHHHHHHHHhchhhhch
Q 000827 811 GRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQT-SDDANVMLNGFGAVVNSLGQRVKPY 889 (1265)
Q Consensus 811 ~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~-~ed~~~al~aL~~I~~~lg~~~~p~ 889 (1265)
+.+...+.|....+|=.++..+.++...++. .++.++++.++..|.... +..|..+|.+|+.++.. |--+-..
T Consensus 344 e~Lls~l~d~dt~VrWSaAKg~grvt~rlp~-----~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r-GlLlps~ 417 (1133)
T KOG1943|consen 344 EHLLSALSDTDTVVRWSAAKGLGRVTSRLPP-----ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR-GLLLPSL 417 (1133)
T ss_pred HHHHHhccCCcchhhHHHHHHHHHHHccCcH-----HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc-CCcchHH
Confidence 6777788899999999999999999888763 455567777776554322 34477888888877652 1111224
Q ss_pred HHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHH
Q 000827 890 LPQICGTIKWRLNNKS--------AKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLY-EYLGEEYPEVLGSILGALKA 960 (1265)
Q Consensus 890 Lp~ilp~Ll~~L~d~~--------~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~-~~L~d~~~~V~~~al~aL~~ 960 (1265)
++.++|.|++.|.... ..||.+||.++-.++..-.+..-+.+++.|...|+ ..+=|..-.+|.++..||.+
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 6788888888887543 46999999888888876544322346666666544 34457777789999999888
Q ss_pred HHHHhCcccCCccHHhHHHHHHHHhcCCC---HHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHH-HhhchHHHHH
Q 000827 961 IVNVIGMTKMTPPIKDLLPRLTPILKNRH---EKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEM-LKAHKKGIRR 1036 (1265)
Q Consensus 961 lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~---~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~-Lk~~~~~iR~ 1036 (1265)
.+-..|.- |+--+ ++...+ -..|.+|... |+....+|-.|. .+++..++.+ +...+..+|.
T Consensus 498 ~VGR~~n~---p~Gi~-------Lis~~dy~sV~~rsNcy~~---l~~~ia~~~~y~--~~~f~~L~t~Kv~HWd~~ire 562 (1133)
T KOG1943|consen 498 NVGRQGNF---PHGIS-------LISTIDYFSVTNRSNCYLD---LCVSIAEFSGYR--EPVFNHLLTKKVCHWDVKIRE 562 (1133)
T ss_pred HhccCCCC---CCchh-------hhhhcchhhhhhhhhHHHH---HhHHHHhhhhHH--HHHHHHHHhcccccccHHHHH
Confidence 87554421 22111 222222 2234444433 443322332222 2445555422 4445889999
Q ss_pred HHHHHHHHHHHhhCcH---HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCC-cccHHHHHhhcCCCchhHHHHHHHHH
Q 000827 1037 ATVNTFGYIAKAIGPQ---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-FTVLPALMNEYRVPELNVQNGVLKSL 1112 (1265)
Q Consensus 1037 ~a~~tlg~Ia~~iGp~---~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp-~~vlPaL~~~~~~~~~~vq~~vl~al 1112 (1265)
.+..++..++..--.. .++|.|++..-+.+...|++...+.|.+.-.+-. +.+++.+
T Consensus 563 laa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l------------------- 623 (1133)
T KOG1943|consen 563 LAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGL------------------- 623 (1133)
T ss_pred HHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhh-------------------
Confidence 9999999987653222 4778888877777788888877776655432211 0011111
Q ss_pred HHHHHHhchhhhhhHHhHHHHHHHHhccCC--hhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhcccCChHHHHH
Q 000827 1113 SFLFEYIGEMGKDYIYAVTPLLEDALMDRD--LVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINA 1190 (1265)
Q Consensus 1113 ~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d--~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~~~s~~v~~~ 1190 (1265)
.++-.+.+..++|.+.+.-.++- ...||.-+..++.+.........+-....+...+..++-++. .+|++
T Consensus 624 -------~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~ 695 (1133)
T KOG1943|consen 624 -------DENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDA 695 (1133)
T ss_pred -------HHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHH
Confidence 11111112222232222222221 234444444444443322211111111123334445552333 68888
Q ss_pred HHHHHHHHHHHh---CH--HH-HHHHHHHhhcch-hhHHHHHHHHHhhh
Q 000827 1191 VMEAIEGMRVAL---GA--AV-VLNYCLQGLFHP-ARKVREVYWKIYNS 1232 (1265)
Q Consensus 1191 ~~~a~~~~~~~~---g~--~~-~~~~~~~gl~~~-a~~vr~~~~~~~~~ 1232 (1265)
+.+++..++... .+ +. +.+-.+..+-.+ -.++|..+.-+.+.
T Consensus 696 av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~ 744 (1133)
T KOG1943|consen 696 AVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGV 744 (1133)
T ss_pred HHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHcc
Confidence 888887777621 11 22 445566666666 56677766655433
No 39
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=2.8e-08 Score=117.03 Aligned_cols=336 Identities=18% Similarity=0.196 Sum_probs=220.6
Q ss_pred HHHHHHHhc-CCChhHHHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchh
Q 000827 810 VGRIVEDLK-DESEPYRRMVMETIEKVVANLGAS---DIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQR 885 (1265)
Q Consensus 810 l~~i~~~l~-d~~~~vR~~a~~~l~~ii~~lg~~---~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~ 885 (1265)
++.++..+. +.++.++-.++-++..|+...... -.+.. .++.+...+.....+.++-++-|||.|+.- +..
T Consensus 111 v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~ag----avp~fi~Ll~s~~~~v~eQavWALgNIagd-s~~ 185 (514)
T KOG0166|consen 111 VPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAG----AVPIFIQLLSSPSADVREQAVWALGNIAGD-SPD 185 (514)
T ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCC----chHHHHHHhcCCcHHHHHHHHHHHhccccC-ChH
Confidence 455555554 667888888998898887532110 01111 122233344443344466677777766542 134
Q ss_pred hhchHH--HHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 000827 886 VKPYLP--QICGTIKWRLNNKSA-KVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIV 962 (1265)
Q Consensus 886 ~~p~Lp--~ilp~Ll~~L~d~~~-~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv 962 (1265)
++.|+= -+++.|+..+..... .....+.|+|+.|+..-.+..+-..+..++++|...+...+++|+..+|||+..+.
T Consensus 186 ~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 444443 266777777777765 45557899999999754433223456777888888888999999999999999998
Q ss_pred HHhCcccCCccH-HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHh-hchHHHHHHHHH
Q 000827 963 NVIGMTKMTPPI-KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLK-AHKKGIRRATVN 1040 (1265)
Q Consensus 963 ~~~g~~~l~p~l-~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk-~~~~~iR~~a~~ 1040 (1265)
..- .+.+.--+ -.++|+|+++|.+....|+..|+.++|.|+.....+....--...++.|..++. .+...+|..|+.
T Consensus 266 dg~-ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 266 DGS-NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW 344 (514)
T ss_pred cCC-hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence 632 22222112 458899999999999999999999999977653332111100234555566666 456779999999
Q ss_pred HHHHHHHhhCcH---------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCC--------cccHHHHHhhcCCCchh
Q 000827 1041 TFGYIAKAIGPQ---------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--------FTVLPALMNEYRVPELN 1103 (1265)
Q Consensus 1041 tlg~Ia~~iGp~---------~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp--------~~vlPaL~~~~~~~~~~ 1103 (1265)
+++.|+. |.. .++|.|++.|...+...|.-++.||+-+.-.+.+ ..+++.|.+.+..++..
T Consensus 345 ~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ 422 (514)
T KOG0166|consen 345 TISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVK 422 (514)
T ss_pred HHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChH
Confidence 9999975 443 4789999999999999999999999876654443 25788999988888877
Q ss_pred HHHHHHHHHHHHHHHhchhhh----h----hHHh--HHHHHHHHhccCChhHHHHHHHHHH
Q 000827 1104 VQNGVLKSLSFLFEYIGEMGK----D----YIYA--VTPLLEDALMDRDLVHRQTAASAVK 1154 (1265)
Q Consensus 1104 vq~~vl~al~~l~~~ig~~~~----~----yi~~--i~PlL~~~l~d~d~~~Rq~A~~~l~ 1154 (1265)
+...+|.++..|+.. |+... . +|.. -+.-++.+-..++..+...|..++.
T Consensus 423 ii~v~Ld~l~nil~~-~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~ 482 (514)
T KOG0166|consen 423 IILVALDGLENILKV-GEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIID 482 (514)
T ss_pred HHHHHHHHHHHHHHH-HHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHH
Confidence 777888999888764 33322 1 1211 1233444333445566666665554
No 40
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=5.9e-06 Score=103.86 Aligned_cols=235 Identities=13% Similarity=0.185 Sum_probs=175.0
Q ss_pred CCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHH
Q 000827 819 DESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIK 898 (1265)
Q Consensus 819 d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll 898 (1265)
..+..+++.+...+..++..-............+...++..++......+...+.+|..|.+.++..+..+++..+|-++
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvI 744 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVI 744 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34677888888888877766211111122233344445555555444556789999999999999777788999999888
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHH--HHhhcch---HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCcc
Q 000827 899 WRLNNKSAKVRQQAADLISRIAV--VMKQCHE---EQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPP 973 (1265)
Q Consensus 899 ~~L~d~~~~VR~~A~~~lg~La~--~l~~~~~---~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~ 973 (1265)
-++++.+..-|+.|..+|-.|+. ......+ ...++.++.++++.+-.+...+..+-+-|+..++..++...=.++
T Consensus 745 L~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~ 824 (1176)
T KOG1248|consen 745 LSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDET 824 (1176)
T ss_pred HhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 88899999999999999888874 2111111 347888888888877656666666658888888887755433577
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCC-CcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcH
Q 000827 974 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAE-FVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQ 1052 (1265)
Q Consensus 974 l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~-~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~ 1052 (1265)
+..++..+.-.|...+..++.+|+..+..++..-++ .+.++ ...+++.++.++++....+|..+-.-|-.+.+.+|.+
T Consensus 825 l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~ 903 (1176)
T KOG1248|consen 825 LEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAE 903 (1176)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHH
Confidence 888888888889999999999999999998887443 34443 5568888888889989999999999999999999987
Q ss_pred HH
Q 000827 1053 DV 1054 (1265)
Q Consensus 1053 ~v 1054 (1265)
.+
T Consensus 904 eL 905 (1176)
T KOG1248|consen 904 EL 905 (1176)
T ss_pred HH
Confidence 54
No 41
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.99 E-value=1.4e-07 Score=115.86 Aligned_cols=327 Identities=19% Similarity=0.204 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHH--HHHHHHHHHhhCCC
Q 000827 869 NVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLM--GHLGVVLYEYLGEE 946 (1265)
Q Consensus 869 ~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll--~~L~~~L~~~L~d~ 946 (1265)
..++..|..+...... ...++++.+.|..+|.++++.||.-+++.|++++..-... .+++ ..+.+.+...+.++
T Consensus 56 ~~~~~iL~~~l~~~~~--~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~--~~~~~~~~l~~~i~~~L~~~ 131 (503)
T PF10508_consen 56 ELICDILKRLLSALSP--DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGA--AQLLVDNELLPLIIQCLRDP 131 (503)
T ss_pred HHHHHHHHHHHhccCH--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHH--HHHhcCccHHHHHHHHHcCC
Confidence 4555566666554432 2237889999999999999999999999999987532111 1111 33566666778999
Q ss_pred CHHHHHHHHHHHHHHHHHhCcccCCccHHhH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHH
Q 000827 947 YPEVLGSILGALKAIVNVIGMTKMTPPIKDL-----LPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICF 1021 (1265)
Q Consensus 947 ~~~V~~~al~aL~~lv~~~g~~~l~p~l~~L-----lp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~ 1021 (1265)
+.+|...++.+|..++..- +.++.+ +..|...+...+..+|..+++++..|++.+.+...+-.-..++.
T Consensus 132 d~~Va~~A~~~L~~l~~~~------~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~ 205 (503)
T PF10508_consen 132 DLSVAKAAIKALKKLASHP------EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLD 205 (503)
T ss_pred cHHHHHHHHHHHHHHhCCc------hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHH
Confidence 9999999999999998532 233444 77788888777888999999999999987665443321113777
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhhCcH------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHh
Q 000827 1022 ELLEMLKAHKKGIRRATVNTFGYIAKAIGPQ------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMN 1095 (1265)
Q Consensus 1022 ~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~------~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~ 1095 (1265)
.+++.+++++--++.+++++++.+|..-... .+++.|.+.+...+.+-|... ..+
T Consensus 206 ~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~--------------~~l----- 266 (503)
T PF10508_consen 206 LLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSS--------------LLL----- 266 (503)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccc--------------hhh-----
Confidence 7888888888888999999999998721110 122333332221111100000 011
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHHHHHHHHHHHhcccC---C--CchhHHH
Q 000827 1096 EYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAG---L--GCEDALV 1170 (1265)
Q Consensus 1096 ~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~g---~--~~e~~~~ 1170 (1265)
-+.++.++.++..-........+.++..|.+.+...|...+..|..+++.++...-| + ...+.+.
T Consensus 267 ----------~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~ 336 (503)
T PF10508_consen 267 ----------PGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMK 336 (503)
T ss_pred ----------hhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHH
Confidence 133344554443211112222345555666667778999999999998877644433 1 2235666
Q ss_pred HHHHhhhhhcccCChHHHHHHHHHHHHHHHHh-------------------CHHHHHHHHHHhhcchhhHHHHHHHHHhh
Q 000827 1171 HLLNYVWPNIFETSPHVINAVMEAIEGMRVAL-------------------GAAVVLNYCLQGLFHPARKVREVYWKIYN 1231 (1265)
Q Consensus 1171 ~~ln~l~~~i~~~s~~v~~~~~~a~~~~~~~~-------------------g~~~~~~~~~~gl~~~a~~vr~~~~~~~~ 1231 (1265)
|+++.+...+-..+.+++.+.++|+..+...- |......+++..+..|-.++|.+..+++.
T Consensus 337 ~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~ 416 (503)
T PF10508_consen 337 HVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQ 416 (503)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHH
Confidence 77777766666677789999999887774322 22222337777778888999999888876
Q ss_pred hhh
Q 000827 1232 SLY 1234 (1265)
Q Consensus 1232 ~~~ 1234 (1265)
.+.
T Consensus 417 ~l~ 419 (503)
T PF10508_consen 417 ALA 419 (503)
T ss_pred HHh
Confidence 653
No 42
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1.8e-06 Score=103.42 Aligned_cols=444 Identities=15% Similarity=0.166 Sum_probs=242.4
Q ss_pred HHHHHHHHH-HHHHhhcCChhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCHHH
Q 000827 471 QRKTALRQL-TDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYA 549 (1265)
Q Consensus 471 vR~~A~r~L-~~~A~~~G~~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~V 549 (1265)
....||+.+ +.+|+......+|..++.-+-+. +-+-|.+.--.+-+.++.-+++-. -=+..+...|.|+++.+
T Consensus 51 ~KleAmKRIia~iA~G~dvS~~Fp~VVKNVask--n~EVKkLVyvYLlrYAEeqpdLAL----LSIntfQk~L~DpN~Li 124 (968)
T KOG1060|consen 51 LKLEAMKRIIALIAKGKDVSLLFPAVVKNVASK--NIEVKKLVYVYLLRYAEEQPDLAL----LSINTFQKALKDPNQLI 124 (968)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhcc--CHHHHHHHHHHHHHHhhcCCCcee----eeHHHHHhhhcCCcHHH
Confidence 345566554 77777554444555555544443 333333222233344444443310 01244567889999999
Q ss_pred HHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhC--hhhHHHHHHHHHcCCchhHHHHHHHHH
Q 000827 550 RVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALG--IPALLPFLKAVCQSKKSWQARHTGIKI 627 (1265)
Q Consensus 550 R~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg--~~~Llp~L~~~l~s~~s~~~R~aal~~ 627 (1265)
|..|..+|+.+=--+-.+-|+-++.....++.+|||++||.+|..+-+.-. -++|+..+..++.+.. .-.--+|+++
T Consensus 125 RasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~s-plVvgsAv~A 203 (968)
T KOG1060|consen 125 RASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRS-PLVVGSAVMA 203 (968)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCC-CcchhHHHHH
Confidence 999988887653222223455677788889999999999999999877643 4577777777787754 5566778888
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHh--C--------------------------cc
Q 000827 628 VQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAA--A--------------------------PY 679 (1265)
Q Consensus 628 L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~--~--------------------------p~ 679 (1265)
+..+|-.-=..+-+|...+ +.++.|-+.==+...+..|-..|..- . |+
T Consensus 204 F~evCPerldLIHknyrkl----C~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~ 279 (968)
T KOG1060|consen 204 FEEVCPERLDLIHKNYRKL----CRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPY 279 (968)
T ss_pred HHHhchhHHHHhhHHHHHH----HhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCc
Confidence 8877643111222333332 33344411111112222333332221 1 11
Q ss_pred ch-hhhHHhHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhc
Q 000827 680 GI-ESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVST 758 (1265)
Q Consensus 680 ~~-~~~~~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~ 758 (1265)
.. ..+.-+|+..--.++.....+.-++..++-++.|.. ....|...|++.+.+ ..+++.++|..+..++..
T Consensus 280 ~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~-------~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~ 351 (968)
T KOG1060|consen 280 VNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN-------QVTKIAKALVRLLRS-NREVQYVVLQNIATISIK 351 (968)
T ss_pred ccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH-------HHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhc
Confidence 10 112223333223334443333333333333444432 234467777777754 456778888888766643
Q ss_pred cCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHhcChhhhHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 000827 759 EGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQL-VETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVA 837 (1265)
Q Consensus 759 ~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~l-l~~~~~la~~~g~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~ 837 (1265)
. ..+..++++.|..+. .|.-.++.+ ++.+..+++......|++.+..+.++....+-.+++.+|++.+.
T Consensus 352 ~--------~~lF~P~lKsFfv~s--sDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~ 421 (968)
T KOG1060|consen 352 R--------PTLFEPHLKSFFVRS--SDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCAS 421 (968)
T ss_pred c--------hhhhhhhhhceEeec--CCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 2 234556666664442 222222222 46677788887788889988888887666788888888888877
Q ss_pred hhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcC-CCHHHHHHHHHHH
Q 000827 838 NLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNN-KSAKVRQQAADLI 916 (1265)
Q Consensus 838 ~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d-~~~~VR~~A~~~l 916 (1265)
..+.- ....+.+++..+.....-+...++..+..+++.-...-.. ++..|..++.. .-+.-|...+|++
T Consensus 422 ~~~sv------~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~----ii~~La~lldti~vp~ARA~IiWLi 491 (968)
T KOG1060|consen 422 RIGSV------TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE----ILFQLARLLDTILVPAARAGIIWLI 491 (968)
T ss_pred hhCch------hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH----HHHHHHHHhhhhhhhhhhceeeeee
Confidence 76542 2245666666664321111223333333333322211111 23333344433 2466788889999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 000827 917 SRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGAL 958 (1265)
Q Consensus 917 g~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL 958 (1265)
|..+..+. .+.+.+...+.+...++..+|+-.++.--
T Consensus 492 ge~~e~vp-----ri~PDVLR~laksFs~E~~evKlQILnL~ 528 (968)
T KOG1060|consen 492 GEYCEIVP-----RIAPDVLRKLAKSFSDEGDEVKLQILNLS 528 (968)
T ss_pred hhhhhhcc-----hhchHHHHHHHHhhccccchhhHHHHHhh
Confidence 99887642 34455555566666777777765555433
No 43
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=0.00075 Score=84.09 Aligned_cols=316 Identities=13% Similarity=0.176 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHhchh--hhchHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHhhC
Q 000827 869 NVMLNGFGAVVNSLGQR--VKPYLPQ-ICGTIKWRLNNKSAKVRQQAADLISRIAVV-MKQCHEEQLMGHLGVVLYEYLG 944 (1265)
Q Consensus 869 ~~al~aL~~I~~~lg~~--~~p~Lp~-ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~-l~~~~~~~ll~~L~~~L~~~L~ 944 (1265)
..++.++|++++.+.+. ++.-+.. +++.+++.++++.--.|..|||.++.++.. ++. ...+..........|.
T Consensus 436 dGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d---~~~l~~ale~t~~~l~ 512 (1010)
T KOG1991|consen 436 DGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD---PNNLSEALELTHNCLL 512 (1010)
T ss_pred hhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHHHhc
Confidence 57999999999887743 3344443 667888999999999999999999999953 222 2344444444455555
Q ss_pred -CCCHHHHHHHHHHHHHHHHHhCc--ccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChH--HH-HH
Q 000827 945 -EEYPEVLGSILGALKAIVNVIGM--TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAR--EW-MR 1018 (1265)
Q Consensus 945 -d~~~~V~~~al~aL~~lv~~~g~--~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~--e~-~~ 1018 (1265)
|..--|+-.+.-||..++..... ..++|+++.+|..|+.+.+..+...-.+ ++..|...-++.+.++ ++ ..
T Consensus 513 ~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~---vme~iV~~fseElsPfA~eL~q~ 589 (1010)
T KOG1991|consen 513 NDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN---VMEKIVCKFSEELSPFAVELCQN 589 (1010)
T ss_pred cCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH---HHHHHHHHHHHhhchhHHHHHHH
Confidence 66667888899999999987642 3489999999999999887755333333 3333344322333333 22 22
Q ss_pred HHHHHHHHHhh---c-----hHHHHHHHHH---HHHHHHHhhCcH-H--------HHHHHHHhhcccchh-hHHHH--HH
Q 000827 1019 ICFELLEMLKA---H-----KKGIRRATVN---TFGYIAKAIGPQ-D--------VLATLLNNLKVQERQ-NRVCT--TV 1075 (1265)
Q Consensus 1019 il~~LL~~Lk~---~-----~~~iR~~a~~---tlg~Ia~~iGp~-~--------vlp~Ll~~L~~~e~~-~R~~~--~~ 1075 (1265)
+...+++.+.+ . .+++ +|.. |+..|..++... + ++|..--.|+..-.. .+.+- +.
T Consensus 590 La~~F~k~l~~~~~~~~~~ddk~i--aA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~ 667 (1010)
T KOG1991|consen 590 LAETFLKVLQTSEDEDESDDDKAI--AASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVS 667 (1010)
T ss_pred HHHHHHHHHhccCCCCccchHHHH--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 23344555553 1 2222 2333 333333333221 1 222211111111000 01111 11
Q ss_pred HHHHHHhhcCC--cccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhch---hhhhhHHhHHHHHHHHhccCC--hhHHHH
Q 000827 1076 AIAIVAETCSP--FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGE---MGKDYIYAVTPLLEDALMDRD--LVHRQT 1148 (1265)
Q Consensus 1076 ai~~l~e~~gp--~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~---~~~~yi~~i~PlL~~~l~d~d--~~~Rq~ 1148 (1265)
.+-+..+.+.| -.++|-+++..+......-..+.-+|..+..+-.. ...+|+..+...+..++++++ ..=...
T Consensus 668 ~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~ 747 (1010)
T KOG1991|consen 668 SLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCES 747 (1010)
T ss_pred hhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHH
Confidence 11122222333 24566666665554332222233333322211111 234577788888888888853 233456
Q ss_pred HHHHHHHHHhcccCCCchhHHHHHHHhhhhhccc--CChHHHHHHHH
Q 000827 1149 AASAVKHMALGVAGLGCEDALVHLLNYVWPNIFE--TSPHVINAVME 1193 (1265)
Q Consensus 1149 A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~~--~s~~v~~~~~~ 1193 (1265)
|+.++..+.+.|.| ..+.....++..++..+.. .+..++.-+++
T Consensus 748 a~kLle~iiL~~kg-~~dq~iplf~~~a~~~l~~~~e~s~~~~~~le 793 (1010)
T KOG1991|consen 748 ACKLLEVIILNCKG-LLDQYIPLFLELALSRLTREVETSELRVMLLE 793 (1010)
T ss_pred HHHHHHHHHHHhcC-cHhhHhHHHHHHHHHHHhccccchHHHHHHHH
Confidence 88999999999998 5555555566666655544 44455555555
No 44
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.83 E-value=0.0013 Score=81.16 Aligned_cols=563 Identities=15% Similarity=0.152 Sum_probs=265.0
Q ss_pred HHHHHHHHHhccCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhhhhhHHH
Q 000827 454 ERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHK 533 (1265)
Q Consensus 454 ~~~i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~ 533 (1265)
+..|..+|..+-+.|+.+|..|-.+|.+....- .+...+-...++...+-+.|+.++-.+.+...+ |-..
T Consensus 3 ~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~---~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~-------hW~~ 72 (1005)
T KOG2274|consen 3 KQAIIELLSGSLSADQNVRSQAETQLKQLELTE---GFGVALAEVAANKDASLPLRQIALVLLKRYIEK-------HWSP 72 (1005)
T ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhccccch---HHHHHHHHHHhCcccCchHHHHHHHHHHHHHHH-------hCCC
Confidence 457888888899999999999988887764433 355566667777666777888776555443332 2222
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhh---ChhhHHHHHHH
Q 000827 534 ILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASAL---GIPALLPFLKA 610 (1265)
Q Consensus 534 Ll~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~l---g~~~Llp~L~~ 610 (1265)
....... +.- +-..+.. .+...|...+.++...+|++++.++..+|... +||+++|++..
T Consensus 73 ~~E~fr~----~~~-~~e~~K~------------~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~ 135 (1005)
T KOG2274|consen 73 NFEAFRY----PLI-VSEEVKA------------LIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILK 135 (1005)
T ss_pred hHhhccC----CCc-ccHHHHH------------HHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 2222211 110 1111111 11122223333556678999999999999873 49999999999
Q ss_pred HHcCCchhHHHHHHHHHHHHHHHHhCC----Cc-chhHHHHHHHHHhhcCCCChhhHHHHH--HHHHHHHHHhCccchh-
Q 000827 611 VCQSKKSWQARHTGIKIVQQIAILIGC----AV-LPHLRSLVEIIEHGLNDENQKVRTITA--LSLAALAEAAAPYGIE- 682 (1265)
Q Consensus 611 ~l~s~~s~~~R~aal~~L~~i~~~~g~----~l-~p~L~~ll~~l~~~L~De~~~VR~~A~--~aL~~lae~~~p~~~~- 682 (1265)
++++.+ -..-|+++.++..+....-. .+ ..-++.+.-. .......+...|..++ .-+...+..+.++...
T Consensus 136 ~l~~~n-~n~i~~am~vL~el~~ev~~ee~~~~~~~~l~~m~~~-f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~ 213 (1005)
T KOG2274|consen 136 LLSSGN-ENSIHGAMRVLAELSDEVDVEEMFFVGPVSLAEMYRI-FALTIVYSIITRLGAARGKLFTSCLTLITNVEEVW 213 (1005)
T ss_pred HHhccc-hhhhhhHHHHHHHHHHHHHHHHHhcccccchhhhhhh-hhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHH
Confidence 998754 67889999999887765421 11 1223333322 2333444444444443 2233333333332221
Q ss_pred ------hhHHhHHHHHHhhhcc----chH---HHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCHHHHHHHH
Q 000827 683 ------SFDSVLKPLWKGIRSH----RGK---VLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVL 749 (1265)
Q Consensus 683 ------~~~~iL~~L~~~l~~~----~~~---~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de~~r~~al 749 (1265)
.+.+++..++.-+... .+. .+-..+++...+...|.. +.+.++..+++..-..+. +..+.
T Consensus 214 ~~~~~~~~s~~l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~-~~~~~~~~~~~~vw~~~~------~~~~~ 286 (1005)
T KOG2274|consen 214 AEHVKVFLSQILNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVENFPS-LINPFMMGMFSIVWQTLE------KILAV 286 (1005)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhhHH-hhhHHHHhhhhHHHHHHH------HHHhh
Confidence 1234444444333221 111 111122222222211111 111111111111100000 00000
Q ss_pred HHHHHhhhccCC-cchh----hhhcc------hHHHHHHHHHH-hhhhh-HHHHHHHHHHHHHHHHhcChh-hhHHH---
Q 000827 750 KVVKQCVSTEGV-EADY----IRSDI------LPEFFRNFWVR-RMALD-RRNYKQLVETTVEIANKVGVA-DIVGR--- 812 (1265)
Q Consensus 750 ~~l~~~~~~~~~-~~~~----l~~~i------lp~l~~~~~~~-~~~~d-~~~~~~ll~~~~~la~~~g~~-~il~~--- 812 (1265)
-+...+-.++.. .+.+ ....+ +-.|...+... +.... ...+..++ ..+..-.... +.+..
T Consensus 287 yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI---~~~v~y~Qlseeqie~w~s 363 (1005)
T KOG2274|consen 287 YVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELI---YQLVAYLQLSEEQIEVWTS 363 (1005)
T ss_pred hhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHhhHHHHHHHhc
Confidence 000000000000 0000 00000 00111111110 00000 00111111 1111110000 00000
Q ss_pred -HHHHhcCCC--hhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhc------ccchHHHHHHHHHHHHHHhc
Q 000827 813 -IVEDLKDES--EPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQ------TSDDANVMLNGFGAVVNSLG 883 (1265)
Q Consensus 813 -i~~~l~d~~--~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~------~~ed~~~al~aL~~I~~~lg 883 (1265)
.-....|++ ...|-.+...+..++..+|..... .+.+..-..+++. ..+.+--...++-.-+...+
T Consensus 364 D~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~~i~-----~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~ 438 (1005)
T KOG2274|consen 364 DVNQFVADEDDGYTARISVRDLLLEVITTFGNEGIN-----PIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVR 438 (1005)
T ss_pred cHHHhhccCCCCchhhhhHHHHHHHHHHhccchhhh-----HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcc
Confidence 001111222 245555666666777776654321 2222222233221 11111011111111111122
Q ss_pred --hhhhchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Q 000827 884 --QRVKPYLPQICGTIKWRLNN-KSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLG-EEYPEVLGSILGALK 959 (1265)
Q Consensus 884 --~~~~p~Lp~ilp~Ll~~L~d-~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~-d~~~~V~~~al~aL~ 959 (1265)
.....++..++-.+...+.. ..|..-..++++++.++...... .+++..+.......+. +..+-++.+++.++.
T Consensus 439 ~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~--~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~ 516 (1005)
T KOG2274|consen 439 IDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVIN--PQLLQHFLNATVNALTMDVPPPVKISAVRAFC 516 (1005)
T ss_pred cCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHhhccCCCCchhHHHHHHHH
Confidence 11234444444445555443 34544447889999888763221 2344444444444444 555667888888877
Q ss_pred HHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhh--chHHHHHH
Q 000827 960 AIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKA--HKKGIRRA 1037 (1265)
Q Consensus 960 ~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~--~~~~iR~~ 1037 (1265)
..+ +.+-+.|..+.++..|..........|-....+++...++..++|.... =..||+.++..+-. +.+.+-..
T Consensus 517 ~~~---~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~-~skI~P~~i~lF~k~s~DP~V~~~ 592 (1005)
T KOG2274|consen 517 GYC---KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASM-ESKICPLTINLFLKYSEDPQVASL 592 (1005)
T ss_pred hcc---CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhh-hcchhHHHHHHHHHhcCCchHHHH
Confidence 776 6777888899999999988888888888889999999988876664332 12556655543322 23444444
Q ss_pred HHHHHH---HHHHhhCcH--HHHHHHHHhhcccc
Q 000827 1038 TVNTFG---YIAKAIGPQ--DVLATLLNNLKVQE 1066 (1265)
Q Consensus 1038 a~~tlg---~Ia~~iGp~--~vlp~Ll~~L~~~e 1066 (1265)
+-++|- .++...||. .++|.|++-+..+.
T Consensus 593 ~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~ 626 (1005)
T KOG2274|consen 593 AQDLFEELLQIAANYGPMQERLIPSLISVLQLNA 626 (1005)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcc
Confidence 444444 445566774 58999999887665
No 45
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.72 E-value=0.00076 Score=93.23 Aligned_cols=695 Identities=16% Similarity=0.195 Sum_probs=346.0
Q ss_pred ccCCCHhHHHHHHHHHHHHHhhcCCh--hhHHHHhHHhcC--CCCCHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHH
Q 000827 464 VKNGTPPQRKTALRQLTDKAREFGAG--PLFNRILPLLMQ--PTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIE 539 (1265)
Q Consensus 464 lkn~~~~vR~~A~r~L~~~A~~~G~~--~~~~~iLp~l~~--~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~ 539 (1265)
+.+.+..+-..|.+.++-.+-.-+.. .++..-...+++ .......||.++-++..++...+....|+++.++..+.
T Consensus 102 ~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~ 181 (2341)
T KOG0891|consen 102 LPSNDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIF 181 (2341)
T ss_pred hccCChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHH
Confidence 35557777777777777665543321 111111111111 11223458888889999999999999999999999999
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHh---c-------hHHHHHhhccCCCCch--------------------------HH
Q 000827 540 PLLIDEDYYARVEGREIISNLSKAA---G-------LATMIAAMRPDIDNID--------------------------EY 583 (1265)
Q Consensus 540 ~lL~ded~~VR~~a~~il~~La~~~---G-------l~~~~~~L~~~l~~~d--------------------------~~ 583 (1265)
..+.|+++.+|..+..++..+.-.. + +.......+..+.++. -.
T Consensus 182 ~~~~~~~~~i~~~a~~al~~~~~~~~~~~~~~~~~~~~rcvd~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 261 (2341)
T KOG0891|consen 182 AALRDPKPAIRLQACSALHAVLSSLAQREAKLKPQWYQRCVDEARHGLSSDGVKIHASLLVYNELLRISDPFLEKYDSTC 261 (2341)
T ss_pred HhccCCChhhhHHHHHHHHHHHhhhhhccchhhhHHHHHHHHhccccccchHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999888877654432 2 2222233333333332 11
Q ss_pred HHHHHHHH-------------HHHHHhhhC-------hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhH
Q 000827 584 VRNTTARA-------------FSVVASALG-------IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHL 643 (1265)
Q Consensus 584 vR~~aa~~-------------l~~lA~~lg-------~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L 643 (1265)
+|...... +..+|.... +...+..+...+.. ..-.++..++.|+...+..+.+++
T Consensus 262 ~~~~~~~~lk~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~-----~~~~~~~~i~~ia~al~~~~~~~~ 336 (2341)
T KOG0891|consen 262 VRQAKGKLLKSIVIRMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILRK-----EKTRAFVSIGEIAVALGSSMSPYL 336 (2341)
T ss_pred HHHHHHHHhccccHHHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHHHhhhhhhhhh
Confidence 11111110 000000000 01111122222221 114567778888888888888887
Q ss_pred HHHHHHHHhhcCCCCh-hhH--HHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhccch-HHHHHHHHHHhhhhhhhhH
Q 000827 644 RSLVEIIEHGLNDENQ-KVR--TITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRG-KVLAAFLKAIGFIIPLMDA 719 (1265)
Q Consensus 644 ~~ll~~l~~~L~De~~-~VR--~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~~-~~la~~l~a~~~lip~~~~ 719 (1265)
..+...|.+.+.-.+- ..+ .....|++.++....+ ..|..+...++..+..... ..+...+.-+..-+|-++.
T Consensus 337 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~~~~~~~~~il~~~~~~~~~~~l~e~l~~l~~rl~~l~~ 413 (2341)
T KOG0891|consen 337 SNILDHIRQTLPTKDLARKKFEKSVFTCIGLLASALGP---ADQKDLNKDILEQMFKCTLSDSLLERLFILSQRIPKLGQ 413 (2341)
T ss_pred cchhhhhhhcchhhhHHHHhcchhHHHHHHHHhhccCH---HHHHhHHHHHHHHHhcCCchHHHHHHHHHHHHhccchhh
Confidence 7766666665543221 111 2334556666655544 4444554555555443322 1222222222222232322
Q ss_pred hhhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCC-cchhhhhcchHHHHHHH-HHHhhhhhHHHHHHHHHHH
Q 000827 720 LYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGV-EADYIRSDILPEFFRNF-WVRRMALDRRNYKQLVETT 797 (1265)
Q Consensus 720 ~~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~-~~~~l~~~ilp~l~~~~-~~~~~~~d~~~~~~ll~~~ 797 (1265)
.. .+.++. .+..++..... .+.. ..++|.+-... .-.....+...+.....++
T Consensus 414 ~i--------~~rll~---------------~~~~vl~~~a~~~~~~--~~vl~~~~~p~~~~~~~~~~~~~~~~a~~~l 468 (2341)
T KOG0891|consen 414 SI--------QDRLLN---------------MTSQVLSGKAFIQPGQ--FTVLPKLAIPKAILQKTGDSTDDIQLAFKTL 468 (2341)
T ss_pred HH--------HHHHHH---------------HHHHHHhCccccCccc--cCccchhcccchhhhhcccccHHHHHHHHHH
Confidence 21 111111 11111111000 0000 00111110000 0001111111121222222
Q ss_pred HHHHHhcC-hhhhHHHH-HHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhh--cccchHHHHHH
Q 000827 798 VEIANKVG-VADIVGRI-VEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQE--QTSDDANVMLN 873 (1265)
Q Consensus 798 ~~la~~~g-~~~il~~i-~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e--~~~ed~~~al~ 873 (1265)
..+-.... ....+..+ ...+...+...|+.+..+|..++.....+-....+..+.+..++.++.. .+..+....+.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~ 548 (2341)
T KOG0891|consen 469 GGFKFSGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIR 548 (2341)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhh
Confidence 22211111 11223332 2334456778898888888777665433221112222334444444422 11122222222
Q ss_pred HHHHHHHHhchhhhchHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHH-----HHhh-----------cc--------
Q 000827 874 GFGAVVNSLGQRVKPYLPQ--ICGTIKWRLNNKSAKVRQQAADLISRIAV-----VMKQ-----------CH-------- 927 (1265)
Q Consensus 874 aL~~I~~~lg~~~~p~Lp~--ilp~Ll~~L~d~~~~VR~~A~~~lg~La~-----~l~~-----------~~-------- 927 (1265)
. ...++.+|.+++.| .+..++..++|..-.+|.++...+|+++. ++.. ++
T Consensus 549 v----~~~l~~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~ 624 (2341)
T KOG0891|consen 549 V----LSSLNERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTK 624 (2341)
T ss_pred H----HhhhccchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhH
Confidence 2 22344555555533 66667888899999999999999997775 2211 00
Q ss_pred -h-H---------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCC-
Q 000827 928 -E-E---------------QLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRH- 989 (1265)
Q Consensus 928 -~-~---------------~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~- 989 (1265)
+ . .++..+...++..+.+..+.|..++..++++++...| +.+..+++.+++.+.+.+.+..
T Consensus 625 ~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g-~~~~~~~~~~~~~~~~~l~~~s~ 703 (2341)
T KOG0891|consen 625 EESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGG-EEMVKWVDELFSLIIKMLQDQSS 703 (2341)
T ss_pred HHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhcc-chhhhccchHHHHHHHHHHHhhh
Confidence 0 0 0122233344555677778899999999999998776 5677788889998888887654
Q ss_pred HHHHHHHHHHHHHHHhhCCC-CcChHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHhhCcHHHHHHHHH-hhcccc
Q 000827 990 EKVQENCIDLVGRIADRGAE-FVPAREWMRICFELLEMLKAH-KKGIRRATVNTFGYIAKAIGPQDVLATLLN-NLKVQE 1066 (1265)
Q Consensus 990 ~~Vre~ai~~ig~Ia~~~~~-~~~~~e~~~il~~LL~~Lk~~-~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~-~L~~~e 1066 (1265)
..-|.++..++|.+.+..+- ..|+...+.++..+++.++.. ...+|+.+++.+|..+ +..|....-..++ .++...
T Consensus 704 ~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g-~~d~~~~~~~~~~~~~~~~~ 782 (2341)
T KOG0891|consen 704 LGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG-ALDPYKHKVTEGTSASKISS 782 (2341)
T ss_pred hhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc-ccchhHHHHHhhhhhHhhhh
Confidence 45678999999999988443 334434456666666666655 6889999999999432 3344322221111 111100
Q ss_pred hhhHH--HHHHHHHHHHhhc---CCcccHHHHHhhcCCCchhHH-HHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhcc
Q 000827 1067 RQNRV--CTTVAIAIVAETC---SPFTVLPALMNEYRVPELNVQ-NGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMD 1140 (1265)
Q Consensus 1067 ~~~R~--~~~~ai~~l~e~~---gp~~vlPaL~~~~~~~~~~vq-~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d 1140 (1265)
..... ....+..-++..| -|...+-.++..++++..... ..+.++...+|...|-.+.-++..+.|.+......
T Consensus 783 ~~~k~~~~~~~~~~~~~~~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~ 862 (2341)
T KOG0891|consen 783 EQIKSDIDISLLESGVNPSNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRS 862 (2341)
T ss_pred ccccccchHHHHHhhhhhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHh
Confidence 00000 0010111111111 122233356666666543332 25677888888888888888889998887765443
Q ss_pred CChh----HHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhccc---CChHHHHHHHHHHHHHHHHhCHHH
Q 000827 1141 RDLV----HRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFE---TSPHVINAVMEAIEGMRVALGAAV 1206 (1265)
Q Consensus 1141 ~d~~----~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~~---~s~~v~~~~~~a~~~~~~~~g~~~ 1206 (1265)
.... .-|..+..+ +.... ....+++++..-|-+ ++..+...+...+++++.+++..+
T Consensus 863 ~~~~~~~f~~~q~~~~~---~~~~~------h~~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f 926 (2341)
T KOG0891|consen 863 CPPNLREFYFQQLTSLV---AIVRQ------HIRPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEF 926 (2341)
T ss_pred cCcchhHHHHHhhhhhh---hccch------hHhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3211 111111111 11000 001122222222211 455667777778888888887654
No 46
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=5.3e-05 Score=91.27 Aligned_cols=433 Identities=14% Similarity=0.182 Sum_probs=233.1
Q ss_pred hHHHHHHHHHHHHHHHhhhChhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHH-HHHHHhhcCCCCh
Q 000827 581 DEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSL-VEIIEHGLNDENQ 659 (1265)
Q Consensus 581 d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~l-l~~l~~~L~De~~ 659 (1265)
|...+.+.-|.|+.+|+......++|-+.....+++ ...|+-...-|-+-++. .|.|.-| +..+.+.|.|+++
T Consensus 49 d~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEe-----qpdLALLSIntfQk~L~DpN~ 122 (968)
T KOG1060|consen 49 DSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEE-----QPDLALLSINTFQKALKDPNQ 122 (968)
T ss_pred cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhc-----CCCceeeeHHHHHhhhcCCcH
Confidence 334556666777777877667788887777777765 45555333333333332 2333322 5667888999999
Q ss_pred hhHHHHHHHHHHHHHHhCccchhhhHH-hHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhC
Q 000827 660 KVRTITALSLAALAEAAAPYGIESFDS-VLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQ 738 (1265)
Q Consensus 660 ~VR~~A~~aL~~lae~~~p~~~~~~~~-iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~ 738 (1265)
-+|..|+.+++.+=-. ...+ +|-.+-+...|....+... ...-||-+-..-.+++ .++++++-..+.
T Consensus 123 LiRasALRvlSsIRvp-------~IaPI~llAIk~~~~D~s~yVRk~----AA~AIpKLYsLd~e~k-~qL~e~I~~LLa 190 (968)
T KOG1060|consen 123 LIRASALRVLSSIRVP-------MIAPIMLLAIKKAVTDPSPYVRKT----AAHAIPKLYSLDPEQK-DQLEEVIKKLLA 190 (968)
T ss_pred HHHHHHHHHHHhcchh-------hHHHHHHHHHHHHhcCCcHHHHHH----HHHhhHHHhcCChhhH-HHHHHHHHHHhc
Confidence 9999888887654211 1112 2223334444443222221 1222222211001222 267777777788
Q ss_pred CCCHHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHHHHHHHhhhhhHHHHH--HHHHHHHHHHHhc------------
Q 000827 739 SPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYK--QLVETTVEIANKV------------ 804 (1265)
Q Consensus 739 ~~de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~--~ll~~~~~la~~~------------ 804 (1265)
|.+.-+...|+-+|.+||-.. + +++-..++.+.... .|...-+ .+++++..-|...
T Consensus 191 D~splVvgsAv~AF~evCPer------l--dLIHknyrklC~ll--~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e 260 (968)
T KOG1060|consen 191 DRSPLVVGSAVMAFEEVCPER------L--DLIHKNYRKLCRLL--PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLE 260 (968)
T ss_pred CCCCcchhHHHHHHHHhchhH------H--HHhhHHHHHHHhhc--cchhhhhHHHHHHHHHHHHHhcCCCccccccccc
Confidence 888888888888888888432 1 11212222221100 0111111 1233333333211
Q ss_pred --C-------------h----hh----hHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhh
Q 000827 805 --G-------------V----AD----IVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQ 861 (1265)
Q Consensus 805 --g-------------~----~~----il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~ 861 (1265)
| . .. ++......+...++.+--.++++...+++.. ... .++..++..+.
T Consensus 261 ~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~----~~~----~i~kaLvrLLr 332 (968)
T KOG1060|consen 261 DNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----QVT----KIAKALVRLLR 332 (968)
T ss_pred cCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----HHH----HHHHHHHHHHh
Confidence 0 0 01 1222222223333433333333333332221 111 22333334332
Q ss_pred hcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 000827 862 EQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYE 941 (1265)
Q Consensus 862 e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~ 941 (1265)
+ ..+++...++.+.+++..-..-|.||+..+. -+-.|+. .|..--++.|+.|+.. .-...+++-+..
T Consensus 333 s-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf----v~ssDp~-~vk~lKleiLs~La~e-------sni~~ILrE~q~ 399 (968)
T KOG1060|consen 333 S-NREVQYVVLQNIATISIKRPTLFEPHLKSFF----VRSSDPT-QVKILKLEILSNLANE-------SNISEILRELQT 399 (968)
T ss_pred c-CCcchhhhHHHHHHHHhcchhhhhhhhhceE----eecCCHH-HHHHHHHHHHHHHhhh-------ccHHHHHHHHHH
Confidence 2 2345567788888887777777888887654 2223321 2222234455555431 122333444455
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHH
Q 000827 942 YLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICF 1021 (1265)
Q Consensus 942 ~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~ 1021 (1265)
+..+.+.++.+.++.|++.++...+. .-+..|..|+.++++++..|-..++..|-.+....+.. -.++++
T Consensus 400 YI~s~d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~-----h~~ii~ 469 (968)
T KOG1060|consen 400 YIKSSDRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE-----HLEILF 469 (968)
T ss_pred HHhcCchhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH-----HHHHHH
Confidence 66777778999999999999987754 33678888999999999999988899998888764321 235777
Q ss_pred HHHHHHhhc-hHHHHHHHHHHHHHHHHhhCc--HHHHHHHHHhhcccchhhHHH
Q 000827 1022 ELLEMLKAH-KKGIRRATVNTFGYIAKAIGP--QDVLATLLNNLKVQERQNRVC 1072 (1265)
Q Consensus 1022 ~LL~~Lk~~-~~~iR~~a~~tlg~Ia~~iGp--~~vlp~Ll~~L~~~e~~~R~~ 1072 (1265)
.|.+.+..- .+.-|.+.++-+|..+..+-. -+|+-.+..........++.-
T Consensus 470 ~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~E~~evKlQ 523 (968)
T KOG1060|consen 470 QLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVKLQ 523 (968)
T ss_pred HHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhccccchhhHH
Confidence 776666433 567788888888888876432 256666655555554444433
No 47
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.64 E-value=8.5e-05 Score=91.56 Aligned_cols=365 Identities=14% Similarity=0.190 Sum_probs=202.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCh
Q 000827 727 KEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGV 806 (1265)
Q Consensus 727 ~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~ 806 (1265)
..+.+.|...+.++++.+|..++..+..++.... .. . ..+..
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~---~~-----~------------------------------~~~~~ 117 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSE---GA-----A------------------------------QLLVD 117 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCH---HH-----H------------------------------HHhcC
Confidence 3456677788888999998888888776664321 00 0 00011
Q ss_pred hhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHH-HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc--
Q 000827 807 ADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARL-EELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLG-- 883 (1265)
Q Consensus 807 ~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~-~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg-- 883 (1265)
.+++..+...+.+++..+.+.++.++..++..-... +.+ ...++..+...+.. .++. ..+..+..+++...
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~---~~l~~~~~~~~L~~l~~~-~~~~--vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL---EQLFDSNLLSKLKSLMSQ-SSDI--VRCRVYELLVEIASHS 191 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH---HHHhCcchHHHHHHHHhc-cCHH--HHHHHHHHHHHHHhcC
Confidence 234555667778888888888888888776532111 001 00112222222221 1221 23333443444332
Q ss_pred hhhhchHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhh-cc--hHHHHHHHHHHHHHhhCCC-CHHH-HHHHHH
Q 000827 884 QRVKPYLPQ--ICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQ-CH--EEQLMGHLGVVLYEYLGEE-YPEV-LGSILG 956 (1265)
Q Consensus 884 ~~~~p~Lp~--ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~-~~--~~~ll~~L~~~L~~~L~d~-~~~V-~~~al~ 956 (1265)
.....++-. +++.++..|++.+.-||.+++++++.++..-.. ++ ...++++|...+...-.|+ ...+ ..+.+.
T Consensus 192 ~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~ 271 (503)
T PF10508_consen 192 PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMK 271 (503)
T ss_pred HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHH
Confidence 223344443 788888999999999999999999999972111 00 1235666666665544444 2222 345556
Q ss_pred HHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--CCCCcChH---HHHHHHHHHHHHHhhch
Q 000827 957 ALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR--GAEFVPAR---EWMRICFELLEMLKAHK 1031 (1265)
Q Consensus 957 aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~--~~~~~~~~---e~~~il~~LL~~Lk~~~ 1031 (1265)
.++.++.. .+..+..-.+.++..+..++...+...+..|++++|.|+.+ |...+... .+..++..+....+...
T Consensus 272 f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~ 350 (503)
T PF10508_consen 272 FFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS 350 (503)
T ss_pred HHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence 66666654 33333334467777788888888999999999999999987 44443111 12233444444445556
Q ss_pred HHHHHHHHHHHHHHHHhhCc---HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCchhHHHHH
Q 000827 1032 KGIRRATVNTFGYIAKAIGP---QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGV 1108 (1265)
Q Consensus 1032 ~~iR~~a~~tlg~Ia~~iGp---~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~v 1108 (1265)
..+|..+.+||+.|.....+ .+++ .+. -.+++..+.....-.+++.++.|=..+|.++
T Consensus 351 ~~lk~r~l~al~~il~~~~~~~~~~i~-~~~------------------~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~ 411 (503)
T PF10508_consen 351 TELKLRALHALASILTSGTDRQDNDIL-SIT------------------ESWYESLSGSPLSNLLMSLLKQPFPELRCAA 411 (503)
T ss_pred hHHHHHHHHHHHHHHhcCCCCchHHHH-HHH------------------HHHHHHhcCCchHHHHHHHhcCCchHHHHHH
Confidence 67888889998888543221 1122 110 1123333332111156666777755688888
Q ss_pred HHHHHHHHHHhchhhhhhH---HhHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 000827 1109 LKSLSFLFEYIGEMGKDYI---YAVTPLLEDALMDRDLVHRQTAASAVKHMA 1157 (1265)
Q Consensus 1109 l~al~~l~~~ig~~~~~yi---~~i~PlL~~~l~d~d~~~Rq~A~~~l~~la 1157 (1265)
++.+..++.+- -+...+ +.++.+|.+--++.+...++.=-.+++.++
T Consensus 412 ~~~l~~l~~~~--Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 412 YRLLQALAAQP--WGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred HHHHHHHhcCH--HHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 88887776542 111112 223333333333335555555555555555
No 48
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.63 E-value=3.6e-06 Score=91.96 Aligned_cols=369 Identities=15% Similarity=0.150 Sum_probs=215.5
Q ss_pred cchHHHHHHHHHHHHHHhchhhhchHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHhhc----chHHHHHH
Q 000827 865 SDDANVMLNGFGAVVNSLGQRVKPYLPQ-----ICGTIKWRL-NNKSAKVRQQAADLISRIAVVMKQC----HEEQLMGH 934 (1265)
Q Consensus 865 ~ed~~~al~aL~~I~~~lg~~~~p~Lp~-----ilp~Ll~~L-~d~~~~VR~~A~~~lg~La~~l~~~----~~~~ll~~ 934 (1265)
++|.+..+.+...+-..+...-.|.+.. ++|.++..+ +..+...+..|+|+|..|+.--... .+..-+
T Consensus 82 SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AV-- 159 (526)
T COG5064 82 SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAV-- 159 (526)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCch--
Confidence 4555666666666666666554555544 568888888 5667788889999999998632211 011122
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccH--HhHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhhCCCC
Q 000827 935 LGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPI--KDLLPRLTPILKNRH--EKVQENCIDLVGRIADRGAEF 1010 (1265)
Q Consensus 935 L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l--~~Llp~Ll~~L~~~~--~~Vre~ai~~ig~Ia~~~~~~ 1010 (1265)
|.+...|.+...+|++.++|||++++-.. ..++.|+ ...|..++.+|.+.. -+.-.++-.++..++.-....
T Consensus 160 --PlfiqlL~s~~~~V~eQavWALGNiAGDS--~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 160 --PLFIQLLSSTEDDVREQAVWALGNIAGDS--EGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred --HHHHHHHcCchHHHHHHHHHHhccccCCc--hhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence 33344456777899999999999997421 2233333 224455666665543 466788889999998752111
Q ss_pred cChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcHHH---------HHHHHHhhcccchhhHHHHHHHHHHHH
Q 000827 1011 VPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDV---------LATLLNNLKVQERQNRVCTTVAIAIVA 1081 (1265)
Q Consensus 1011 ~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~v---------lp~Ll~~L~~~e~~~R~~~~~ai~~l~ 1081 (1265)
-.-......++.|.+++...+..+-.-|+.++.++.. ||.+. .+.|+..|..++.+++.-++.++|-+.
T Consensus 236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD--g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIV 313 (526)
T COG5064 236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD--GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV 313 (526)
T ss_pred CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc--CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCee
Confidence 0000123445555566666777888889999999864 45432 234555555555554444444444332
Q ss_pred hhcCC-------cccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhHH-hHHHHHHHHhccCChhHHHHHHHHH
Q 000827 1082 ETCSP-------FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIY-AVTPLLEDALMDRDLVHRQTAASAV 1153 (1265)
Q Consensus 1082 e~~gp-------~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~-~i~PlL~~~l~d~d~~~Rq~A~~~l 1153 (1265)
...-. -.+|+++...+..|.-+++..+|-+++.+-..--+..+.++. .++|.|.+.|+..+.-.|.-||+++
T Consensus 314 TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAi 393 (526)
T COG5064 314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI 393 (526)
T ss_pred ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 11000 124566655566665577777776666543211123333443 4678888999999999999999999
Q ss_pred HHHHhcccCCCchhHHHHHHHhhhh--------hccc-CChHHHHHHHHHHHHHHHHhCH---------HHHHHHHH-Hh
Q 000827 1154 KHMALGVAGLGCEDALVHLLNYVWP--------NIFE-TSPHVINAVMEAIEGMRVALGA---------AVVLNYCL-QG 1214 (1265)
Q Consensus 1154 ~~lal~~~g~~~e~~~~~~ln~l~~--------~i~~-~s~~v~~~~~~a~~~~~~~~g~---------~~~~~~~~-~g 1214 (1265)
.....|+.+. .|. +.|+.. ++++ ...++++..++|++.+...-.. ..+--|+- +|
T Consensus 394 sNatsgg~~~--PD~----iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Ag 467 (526)
T COG5064 394 SNATSGGLNR--PDI----IRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAG 467 (526)
T ss_pred HhhhccccCC--chH----HHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcc
Confidence 8877766543 233 222221 2223 3345888889998876653221 12333443 22
Q ss_pred hc---c-h-hhHHHHHHHHHhhhh--hccccCcceeccCC
Q 000827 1215 LF---H-P-ARKVREVYWKIYNSL--YIGAQDALVAAYPT 1247 (1265)
Q Consensus 1215 l~---~-~-a~~vr~~~~~~~~~~--~~~~~~~~~~~~p~ 1247 (1265)
-. | - ...-|.+|.|.|+-+ |.+-.|++--.-|.
T Consensus 468 gmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~lape 507 (526)
T COG5064 468 GMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPE 507 (526)
T ss_pred cHHHHHHhhhccccHHHHHHHHHHHHHcccchhhhhcCcc
Confidence 21 1 1 345578899998876 44444555443343
No 49
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.62 E-value=0.0078 Score=78.10 Aligned_cols=541 Identities=16% Similarity=0.205 Sum_probs=247.9
Q ss_pred cchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhccchHHHHHHHHHHhhhhhhhh
Q 000827 639 VLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMD 718 (1265)
Q Consensus 639 l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~ 718 (1265)
|...++..+..|..++..+...+|..|.+||+.+++.= |. +-....+...+-..+.|....+..+.+.-+|.++-...
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~D-p~-vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~ 887 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEAD-PS-VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP 887 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcC-hH-hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH
Confidence 33344555566667777788999999999999998763 21 12223455555555666555566666666664432222
Q ss_pred HhhhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHH-HHH
Q 000827 719 ALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLV-ETT 797 (1265)
Q Consensus 719 ~~~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll-~~~ 797 (1265)
..+..|| ..+.....|+.-.||+.|++.+..+|... |.+. ..+.....++ +|..++..++..++ +++
T Consensus 888 e~~~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~---pdf~---~i~~~cakml-rRv~DEEg~I~kLv~etf 955 (1692)
T KOG1020|consen 888 ELIFQYY-----DQIIERILDTGVSVRKRVIKILRDICEET---PDFS---KIVDMCAKML-RRVNDEEGNIKKLVRETF 955 (1692)
T ss_pred HHHHHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhC---CChh---hHHHHHHHHH-HHhccchhHHHHHHHHHH
Confidence 2222333 33445566788889999999999998654 4331 2233333332 23333333344332 333
Q ss_pred HHHHHhcChhhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhccc--chHHHHHHHH
Q 000827 798 VEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTS--DDANVMLNGF 875 (1265)
Q Consensus 798 ~~la~~~g~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~--ed~~~al~aL 875 (1265)
..+=- ...+. .+..+.+-+.....+..+.... +......++++..++..-...+. .....+...+
T Consensus 956 ~klWF-~p~~~---------~~d~~~~~~kI~~~~~vv~~~~---d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v 1022 (1692)
T KOG1020|consen 956 LKLWF-TPVPE---------VNDQPAKARKISLEVDVVMSQV---DLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKV 1022 (1692)
T ss_pred HHHhc-cCCCc---------ccccHHHHHhhHHHHHHHHHHH---HHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhc
Confidence 21100 00000 0111112222211111111111 00011223444444332211000 0111222222
Q ss_pred HHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHHHHHhhcchHHHHH-HHHHHHHHhhCCC-----CH
Q 000827 876 GAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAA-DLISRIAVVMKQCHEEQLMG-HLGVVLYEYLGEE-----YP 948 (1265)
Q Consensus 876 ~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~-~~lg~La~~l~~~~~~~ll~-~L~~~L~~~L~d~-----~~ 948 (1265)
..+++.+-.- ...++...-....++....+|..++ .+|--++.+- ..++. +-...|++||... ..
T Consensus 1023 ~~~~~L~~~c---l~~~i~ev~~~~~~~~~~~~~~~~~lstL~~Fskir-----P~Llt~khv~tL~PYL~s~~~t~~~~ 1094 (1692)
T KOG1020|consen 1023 THVLNLLTHC---LVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIR-----PQLLTKKHVITLQPYLTSKASTIEEA 1094 (1692)
T ss_pred chHHHHHHHH---HHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcC-----chhccHHHHHHhhhHHhccccchHHH
Confidence 2221111100 0111211111123344555555443 3333333321 22222 3334455555432 12
Q ss_pred HHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-CCCCcChHHHHHHHHHHHHHH
Q 000827 949 EVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR-GAEFVPAREWMRICFELLEML 1027 (1265)
Q Consensus 949 ~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~-~~~~~~~~e~~~il~~LL~~L 1027 (1265)
.+...++.-|..++--+. ..=..++..|=..|+.++-..+...-..|+.|+|+++.. ...+--.+.+...+...++.+
T Consensus 1095 ~fl~~vi~Ile~VlPlv~-~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~ 1173 (1692)
T KOG1020|consen 1095 QFLYYVIQILECVLPLVA-NPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVI 1173 (1692)
T ss_pred HHHHHHHHHHHHHhhhhc-cchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Confidence 333444444433332211 000123344444444444455556667788999999985 222211111122233334444
Q ss_pred hhc--------hHHHHHHHHHHHHHHHHhh--------Cc----------HHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 000827 1028 KAH--------KKGIRRATVNTFGYIAKAI--------GP----------QDVLATLLNNLKVQERQNRVCTTVAIAIVA 1081 (1265)
Q Consensus 1028 k~~--------~~~iR~~a~~tlg~Ia~~i--------Gp----------~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~ 1081 (1265)
+.+ ....-.-.+-|+|.+++.. |+ +.++..|+-..|..+-.+|.-+..++|++.
T Consensus 1174 k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~c 1253 (1692)
T KOG1020|consen 1174 KSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFIC 1253 (1692)
T ss_pred HhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 433 2233444588999998854 22 135555666666666778888888877764
Q ss_pred hhcCCcccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCCh--------hHHHHHHHHH
Q 000827 1082 ETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDL--------VHRQTAASAV 1153 (1265)
Q Consensus 1082 e~~gp~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~--------~~Rq~A~~~l 1153 (1265)
-.-..| | .+..+++.+..++..... ....--.++-.++..|.+++. ...+.-..-.
T Consensus 1254 i~hp~l------~---------~~~~v~nly~~ila~~n~-~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edl 1317 (1692)
T KOG1020|consen 1254 IQHPSL------F---------TSREVLNLYDEILADDNS-DIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDL 1317 (1692)
T ss_pred hhCchh------h---------hhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHH
Confidence 221111 1 111222222222211100 000001112222222222221 1122223344
Q ss_pred HHHHhcccCCCch----hHHHHHHHhhhhhcccCChHHHHHHHHHHHHHHH--HhCHHHHHHHHHHhhcchhhHHHHHHH
Q 000827 1154 KHMALGVAGLGCE----DALVHLLNYVWPNIFETSPHVINAVMEAIEGMRV--ALGAAVVLNYCLQGLFHPARKVREVYW 1227 (1265)
Q Consensus 1154 ~~lal~~~g~~~e----~~~~~~ln~l~~~i~~~s~~v~~~~~~a~~~~~~--~~g~~~~~~~~~~gl~~~a~~vr~~~~ 1227 (1265)
++|-.-..|++.. ..+.+||.-++...|+..-.+|...++.+.-+.. -+.|..-.+|+++---+|....|+...
T Consensus 1318 kem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP~~cvPtLIAL~Tdp~~~~r~~Ad 1397 (1692)
T KOG1020|consen 1318 KEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHPVHCVPTLIALETDPSQAIRHVAD 1397 (1692)
T ss_pred HhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCccchhhhheeecCChHHHHHHHHH
Confidence 5553323344333 4556677777777778888899888887766554 233666788888888888888888776
Q ss_pred HHhh
Q 000827 1228 KIYN 1231 (1265)
Q Consensus 1228 ~~~~ 1231 (1265)
.++-
T Consensus 1398 ~LL~ 1401 (1692)
T KOG1020|consen 1398 ELLK 1401 (1692)
T ss_pred HHHH
Confidence 5543
No 50
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.58 E-value=2.9e-06 Score=105.81 Aligned_cols=130 Identities=19% Similarity=0.276 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHhchh-hhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCC
Q 000827 868 ANVMLNGFGAVVNSLGQR-VKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEE 946 (1265)
Q Consensus 868 ~~~al~aL~~I~~~lg~~-~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~ 946 (1265)
+.+.++.++-+|..+|.. .. ..|++.|...|||++|..|.+-++.|..++-.++... +-.-|.|.|...|.|.
T Consensus 595 kr~Lle~i~~LC~FFGk~ksN---D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs---~seyllPLl~Q~ltD~ 668 (1431)
T KOG1240|consen 595 KRALLESIIPLCVFFGKEKSN---DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS---VSEYLLPLLQQGLTDG 668 (1431)
T ss_pred HHHHHHHHHHHHHHhhhcccc---cchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee---HHHHHHHHHHHhccCc
Confidence 445555566666666632 11 2367777789999999999999998887776665431 2234566777778899
Q ss_pred CHHHHHHHHHHHHHHHHHhCcccC-CccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000827 947 YPEVLGSILGALKAIVNVIGMTKM-TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 947 ~~~V~~~al~aL~~lv~~~g~~~l-~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~ 1006 (1265)
.+.|..+++++|..+++. ..+ ++++.+|+....+.|..+|.=+|.+++..|..++..
T Consensus 669 EE~Viv~aL~~ls~Lik~---~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 669 EEAVIVSALGSLSILIKL---GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred chhhHHHHHHHHHHHHHh---cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 999999999999999984 233 488999999999999999999999999999999887
No 51
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.0001 Score=88.14 Aligned_cols=203 Identities=15% Similarity=0.180 Sum_probs=123.5
Q ss_pred HhccCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhh
Q 000827 462 LKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPL 541 (1265)
Q Consensus 462 l~lkn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~l 541 (1265)
.++++.+.+---.|+..|..+...-=+..+-+.++-+|.++ -.-.|-.+|-++-.+..+.++.++|.+++|..-+
T Consensus 116 kdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~ss--kpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkL--- 190 (877)
T KOG1059|consen 116 KDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSS--KPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKL--- 190 (877)
T ss_pred HHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhc---
Confidence 44678877766667666644322111123455666666554 3456888999999999999999999998887654
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHh-----chHH-HHHhhccCCCCchHHHHHHHHHHHHHHHhhhC--hhhHHHHHHHHHc
Q 000827 542 LIDEDYYARVEGREIISNLSKAA-----GLAT-MIAAMRPDIDNIDEYVRNTTARAFSVVASALG--IPALLPFLKAVCQ 613 (1265)
Q Consensus 542 L~ded~~VR~~a~~il~~La~~~-----Gl~~-~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg--~~~Llp~L~~~l~ 613 (1265)
-|+|+.|...|..+|+.|++.. .++. |...|. ++...|+--.....|+.++-.=. ...|++-|.+++.
T Consensus 191 -eDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllt---tSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~ 266 (877)
T KOG1059|consen 191 -EDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLV---TSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELME 266 (877)
T ss_pred -cCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHh---ccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHH
Confidence 6799999999999999999875 2322 222221 23444544334445554443311 3567788877776
Q ss_pred CCchhHHHHHHHHHHHHHHHHhCCCcchhHHHH---HHHHHhhcCCCChhhHHHHHHHHHHHHHH
Q 000827 614 SKKSWQARHTGIKIVQQIAILIGCAVLPHLRSL---VEIIEHGLNDENQKVRTITALSLAALAEA 675 (1265)
Q Consensus 614 s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~l---l~~l~~~L~De~~~VR~~A~~aL~~lae~ 675 (1265)
+...+..-+-++.++-.. .+..++..|-..+ ++-|.-++.|.++..|+.++.|++.++..
T Consensus 267 sT~AmSLlYECvNTVVa~--s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~kt 329 (877)
T KOG1059|consen 267 STVAMSLLYECVNTVVAV--SMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT 329 (877)
T ss_pred hhHHHHHHHHHHHHheee--hhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh
Confidence 643222222222222211 1112233444443 44555577888889999988888887754
No 52
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.56 E-value=1.2e-06 Score=96.96 Aligned_cols=186 Identities=18% Similarity=0.228 Sum_probs=128.3
Q ss_pred hHHHHhHHh--cCCCCCHHHHHHHHHHHHHHHhhc-----chhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Q 000827 491 LFNRILPLL--MQPTLEDQERHLLVKVIDRVLYKL-----DELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKA 563 (1265)
Q Consensus 491 ~~~~iLp~l--~~~~led~~R~~~v~vi~~l~~~l-----~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~ 563 (1265)
.|+.++..+ -++..+|+.|..++.-+.+++... ...+..+++.++..|...+.|....|-..|..+++.++..
T Consensus 4 ~~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~ 83 (228)
T PF12348_consen 4 EFEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQ 83 (228)
T ss_dssp --GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 355566666 334468999999998888876655 2233456666777888888888888888899999999988
Q ss_pred hc--h----HHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhC-hhhH-HHHHHHHHcCCchhHHHHHHHHHHHHHHHHh
Q 000827 564 AG--L----ATMIAAMRPDIDNIDEYVRNTTARAFSVVASALG-IPAL-LPFLKAVCQSKKSWQARHTGIKIVQQIAILI 635 (1265)
Q Consensus 564 ~G--l----~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg-~~~L-lp~L~~~l~s~~s~~~R~aal~~L~~i~~~~ 635 (1265)
.| + ..+++.|...+.+....+|..+..++..+....+ .+.+ ++++...+.+++ +..|..++..+..+....
T Consensus 84 l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn-~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 84 LGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKN-PQVREECAEWLAIILEKW 162 (228)
T ss_dssp HGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-
T ss_pred HhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHc
Confidence 74 2 4455677777778888999999999999999988 5677 788888888865 999999999998887777
Q ss_pred C---CCcch--hHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhC
Q 000827 636 G---CAVLP--HLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAA 677 (1265)
Q Consensus 636 g---~~l~p--~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~ 677 (1265)
+ ..+.. .++.+++.|..++.|.++.||.+|-.++..+...++
T Consensus 163 ~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 163 GSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp ----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred cchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 7 23443 358999999999999999999999999999887764
No 53
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.52 E-value=5e-06 Score=103.79 Aligned_cols=262 Identities=16% Similarity=0.171 Sum_probs=187.3
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCc---c
Q 000827 893 ICGTIKWRLNN-KSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM---T 968 (1265)
Q Consensus 893 ilp~Ll~~L~d-~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~---~ 968 (1265)
+++.|..++++ +...-+-+|+.+|..++..+.. +..+..+.|.++-.+.|.+++||..++.+|.+++..+.. .
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 34444444443 2345667788998888876643 557888888888889999999999999999998876532 2
Q ss_pred cCCccHHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCCCCc---------------Ch--------H----HHHHHH
Q 000827 969 KMTPPIKDLLPRLTPILKN-RHEKVQENCIDLVGRIADRGAEFV---------------PA--------R----EWMRIC 1020 (1265)
Q Consensus 969 ~l~p~l~~Llp~Ll~~L~~-~~~~Vre~ai~~ig~Ia~~~~~~~---------------~~--------~----e~~~il 1020 (1265)
.-.=|.+-|+|.|..++.+ ....||.+-+++|+.+|+..--|+ .. . .+...+
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 2233567789999999888 567889888888888886421110 00 0 222333
Q ss_pred HHH-HHHHhhchHHHHHHHHHHHHHHHHhhCcH----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCC----cccHH
Q 000827 1021 FEL-LEMLKAHKKGIRRATVNTFGYIAKAIGPQ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP----FTVLP 1091 (1265)
Q Consensus 1021 ~~L-L~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~----~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp----~~vlP 1091 (1265)
... ...|.++...+|++.++.|+.++.-+|.+ .+|+.|+..|.+.+.++|..-.-.|.-++-..|. ..++|
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllP 659 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLP 659 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHH
Confidence 322 34556777899999999999999999875 4889999999999999998755555444444454 35789
Q ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHHHHHHHHHHHh
Q 000827 1092 ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMAL 1158 (1265)
Q Consensus 1092 aL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal 1158 (1265)
.|...+.+++..|--.+|.+|+.+++. |-.-+.++..++..+.-.|...+.-+|+.++.++-.++.
T Consensus 660 Ll~Q~ltD~EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 660 LLQQGLTDGEEAVIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHhccCcchhhHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 999999999888888899999999874 433444444444433344778889999999988876654
No 54
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.51 E-value=0.012 Score=76.36 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=87.9
Q ss_pred hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccc
Q 000827 601 IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYG 680 (1265)
Q Consensus 601 ~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~ 680 (1265)
+...+..+...+..+. ...|-.|++|+..|.+.-. .+. -.+.+...+..-+.|.+..||.+|+.-+|.+.-.....+
T Consensus 814 fD~yLk~Il~~l~e~~-ialRtkAlKclS~ive~Dp-~vL-~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~ 890 (1692)
T KOG1020|consen 814 FDPYLKLILSVLGENA-IALRTKALKCLSMIVEADP-SVL-SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELI 890 (1692)
T ss_pred hHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHhcCh-Hhh-cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHH
Confidence 5555666666666554 7899999999998876532 111 124455566667899999999999999999887765555
Q ss_pred hhhhHHhHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhh-hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhc
Q 000827 681 IESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASY-YTKEVMFILIREFQSPDEEMKKIVLKVVKQCVST 758 (1265)
Q Consensus 681 ~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~-~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~ 758 (1265)
.++|+.|. +++.|....+....++.+..+. .. +.++ ...++.-.+++...|.+..+++.+.++|.++|=.
T Consensus 891 ~qyY~~i~----erIlDtgvsVRKRvIKIlrdic---~e-~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 891 FQYYDQII----ERILDTGVSVRKRVIKILRDIC---EE-TPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred HHHHHHHH----hhcCCCchhHHHHHHHHHHHHH---Hh-CCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 55555554 4444443222222222222211 00 0000 0112333445555565555999999999988744
No 55
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.49 E-value=7.2e-06 Score=90.64 Aligned_cols=183 Identities=15% Similarity=0.220 Sum_probs=125.9
Q ss_pred cCCChhHHHHHHHHHHHHHHhhCCCCchhHH---HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHH
Q 000827 818 KDESEPYRRMVMETIEKVVANLGASDIDARL---EELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQIC 894 (1265)
Q Consensus 818 ~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~---~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~il 894 (1265)
.+.+|..|..++..+..++......+....+ ...++..+...+.+..+.....++..++.++..++.+|.||++.++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5677889999998888887655111111111 1122234444444434444568999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHhhCCCCHHHHHHHHHHHHHHHHHhC--cccCC
Q 000827 895 GTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHL-GVVLYEYLGEEYPEVLGSILGALKAIVNVIG--MTKMT 971 (1265)
Q Consensus 895 p~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L-~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g--~~~l~ 971 (1265)
|.|+..+.+.+..||++|..+|..|+.... +...+ ...+.....+.++.||..++..|..+++..+ ...+.
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 999999999999999999999998887543 12233 5555666789999999999999999999887 34455
Q ss_pred cc--HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000827 972 PP--IKDLLPRLTPILKNRHEKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 972 p~--l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~ 1006 (1265)
.. ++.+++.+...+.|.+..||++|-.++..+.+.
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 43 588999999999999999999999999998776
No 56
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.49 E-value=4.2e-07 Score=85.09 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhccc
Q 000827 620 ARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHR 699 (1265)
Q Consensus 620 ~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~ 699 (1265)
.|++|+.+|..+++.+|..+.+|++.|++.++.++.|++++||..||.+|.++++........+|..|+..|++.+.|..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 68999999999999999999999999999999999999999999999999999999988888899999999999999887
Q ss_pred hHH
Q 000827 700 GKV 702 (1265)
Q Consensus 700 ~~~ 702 (1265)
..+
T Consensus 82 ~~V 84 (97)
T PF12755_consen 82 ENV 84 (97)
T ss_pred hhH
Confidence 543
No 57
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.0013 Score=80.33 Aligned_cols=450 Identities=14% Similarity=0.219 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCHHHH-----HHHHHHHHHHHHHh-------c---hHH-----
Q 000827 509 RHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYAR-----VEGREIISNLSKAA-------G---LAT----- 568 (1265)
Q Consensus 509 R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~VR-----~~a~~il~~La~~~-------G---l~~----- 568 (1265)
|+...+++.-...+..+.+.|++++++.+++.+|.+..+..| ..|..-|+.+++.- | +..
T Consensus 264 ka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~V 343 (960)
T KOG1992|consen 264 KAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKV 343 (960)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhh
Confidence 444445555556678888999999999999999986544333 23444455544431 0 001
Q ss_pred ------------------HHHhhccCCCCchHH-HHHHHHHHHHHHHhhhC---hhhHHHHHHHHHc------CCchhHH
Q 000827 569 ------------------MIAAMRPDIDNIDEY-VRNTTARAFSVVASALG---IPALLPFLKAVCQ------SKKSWQA 620 (1265)
Q Consensus 569 ------------------~~~~L~~~l~~~d~~-vR~~aa~~l~~lA~~lg---~~~Llp~L~~~l~------s~~s~~~ 620 (1265)
-++-+|.|+++.|-. .|++|+..+..+...+. .+-+-..+...++ |.+ |..
T Consensus 344 vlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~n-Wk~ 422 (960)
T KOG1992|consen 344 VLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGN-WKK 422 (960)
T ss_pred cccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCcc-ccc
Confidence 123445555555443 56667777777777653 1233334444444 334 999
Q ss_pred HHHHHHHHHHHHHHh-----CCC----c---ch-hHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhhhHHh
Q 000827 621 RHTGIKIVQQIAILI-----GCA----V---LP-HLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSV 687 (1265)
Q Consensus 621 R~aal~~L~~i~~~~-----g~~----l---~p-~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~~~~i 687 (1265)
+..+++.+..+++.. |+. + .. +.++++|-+..--..++|.+|..+++-+-.+=..+++ ++.-.+
T Consensus 423 kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~---~~lm~~ 499 (960)
T KOG1992|consen 423 KDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGK---EHLMAL 499 (960)
T ss_pred cchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCCh---HHHHHH
Confidence 999999999888863 321 1 12 2234555544433346777777665433222222211 223345
Q ss_pred HHHHHHhhhccchHHHHHHH-HHHhhhhhhhhHh---------hhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 000827 688 LKPLWKGIRSHRGKVLAAFL-KAIGFIIPLMDAL---------YASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVS 757 (1265)
Q Consensus 688 L~~L~~~l~~~~~~~la~~l-~a~~~lip~~~~~---------~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~ 757 (1265)
++.+...+.... .++.... .++..+ +.+... ....++..++..|...+..++..--.-.++++-.++.
T Consensus 500 ~p~li~~L~a~s-~vvhsYAA~aiEki-l~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~ 577 (960)
T KOG1992|consen 500 LPRLIRFLEAES-RVVHSYAAIAIEKL-LTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIIS 577 (960)
T ss_pred HHHHHHhccCcc-hHHHHHHHHHHHhc-cccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHH
Confidence 566665555422 1111111 111111 111111 1122333344444444433221100011111111111
Q ss_pred ccCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHHHHHhcCC-ChhHHHHHHHHHHHHH
Q 000827 758 TEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDE-SEPYRRMVMETIEKVV 836 (1265)
Q Consensus 758 ~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i~~~l~d~-~~~vR~~a~~~l~~ii 836 (1265)
.. . +.++ +....++..+.++ +. ...|+. ++.+-.-.+++++-++
T Consensus 578 i~---~----~~i~----------------p~~~~~l~~Ltei---------v~---~v~KNPs~P~fnHYLFEsi~~li 622 (960)
T KOG1992|consen 578 IL---Q----SAII----------------PHAPELLRQLTEI---------VE---EVSKNPSNPQFNHYLFESIGLLI 622 (960)
T ss_pred hC---H----Hhhh----------------hhhhHHHHHHHHH---------HH---HHhcCCCCchhHHHHHHHHHHHH
Confidence 10 0 0011 0111111111111 11 112332 3445556667777666
Q ss_pred HhhCCCCchhHHHHHHHHHHHHHhhhcccch----HHHHHHHHHHHHHHhch----hhhchHHHHHHHHHHHhcCCCHHH
Q 000827 837 ANLGASDIDARLEELLIDGILYAFQEQTSDD----ANVMLNGFGAVVNSLGQ----RVKPYLPQICGTIKWRLNNKSAKV 908 (1265)
Q Consensus 837 ~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed----~~~al~aL~~I~~~lg~----~~~p~Lp~ilp~Ll~~L~d~~~~V 908 (1265)
...+..+ ......+...+++.|+..-.+| -..+++.++.+++..+. .+.|.+|-++.. .-|+-
T Consensus 623 ~~t~~~~--~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp-------~lW~r 693 (960)
T KOG1992|consen 623 RKTCKAN--PSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSP-------NLWKR 693 (960)
T ss_pred HHHhccC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCH-------HHHhh
Confidence 6655443 1122223333333333322223 34788889999988776 333333333322 22332
Q ss_pred HHHHHHHHHHHHHHHhh--c-ch-HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHH
Q 000827 909 RQQAADLISRIAVVMKQ--C-HE-EQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPI 984 (1265)
Q Consensus 909 R~~A~~~lg~La~~l~~--~-~~-~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~ 984 (1265)
+...-.++.-+-..++. | +. .+-+..++.++.........+ .....-|..++..+....+.||+++|.-.+++.
T Consensus 694 ~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~D--h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~R 771 (960)
T KOG1992|consen 694 SGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAND--HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQR 771 (960)
T ss_pred cCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccc--hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHH
Confidence 22111111111111111 1 00 011122222222222222111 134556777777777778899999999999999
Q ss_pred hcCCC-HHHHHHHHHHHHHHHhh-CCCC
Q 000827 985 LKNRH-EKVQENCIDLVGRIADR-GAEF 1010 (1265)
Q Consensus 985 L~~~~-~~Vre~ai~~ig~Ia~~-~~~~ 1010 (1265)
+++.+ ++.....+-.++..+-. ++.+
T Consensus 772 lqnskT~kf~k~~~vF~~~~~ik~~~~~ 799 (960)
T KOG1992|consen 772 LQNSKTEKFVKSFIVFFSLFTIKKGGLM 799 (960)
T ss_pred HhccCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 99876 66666666666665544 5543
No 58
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.00012 Score=89.26 Aligned_cols=490 Identities=13% Similarity=0.148 Sum_probs=250.9
Q ss_pred hccCCCHhHHHHHHHHHHHHHhhcCC--hhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhhhhhHH-HHHHHHH
Q 000827 463 KVKNGTPPQRKTALRQLTDKAREFGA--GPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVH-KILVVIE 539 (1265)
Q Consensus 463 ~lkn~~~~vR~~A~r~L~~~A~~~G~--~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~-~Ll~~i~ 539 (1265)
.+.+.....|+.|+|.+.. .-..|. ..+|+.++..+-...++ .+-..-..+...+..- |... -.+..+.
T Consensus 21 ~l~s~~~~kr~~a~kkvIa-~Mt~G~DvSslF~dvvk~~~T~dle--lKKlvyLYl~nYa~~~-----P~~a~~avnt~~ 92 (734)
T KOG1061|consen 21 QLNSQSKEKRKDAVKKVIA-YMTVGKDVSSLFPDVVKCMQTRDLE--LKKLVYLYLMNYAKGK-----PDLAILAVNTFL 92 (734)
T ss_pred HhhhhhhhhHHHHHHHHHh-cCccCcchHhhhHHHHhhcccCCch--HHHHHHHHHHHhhccC-----chHHHhhhhhhh
Confidence 3344445688888877643 224553 23455555444333222 1111111222222111 2221 1233444
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhC----hhhHHHHHHHHHcCC
Q 000827 540 PLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALG----IPALLPFLKAVCQSK 615 (1265)
Q Consensus 540 ~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg----~~~Llp~L~~~l~s~ 615 (1265)
.-..|+++.+|..|...+..+--..-.+.+..-|+..+++.++|+|++++-+++.+-..-. -..+++.|+.++.+.
T Consensus 93 kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~ 172 (734)
T KOG1061|consen 93 KDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDS 172 (734)
T ss_pred ccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCC
Confidence 4455789999987765554332111124455667778889999999999888877654421 346788888888865
Q ss_pred chhHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHh
Q 000827 616 KSWQARHTGIKIVQQIAILIGC-AVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKG 694 (1265)
Q Consensus 616 ~s~~~R~aal~~L~~i~~~~g~-~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~ 694 (1265)
+ ..+--.|+.++..|.+.... .......+++..+...++. -.-+.-+..+..++....+.. .....++..+...
T Consensus 173 ~-p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~e---c~EW~qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~ 247 (734)
T KOG1061|consen 173 N-PMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNE---CTEWGQIFILDCLAEYVPKDS-REAEDICERLTPR 247 (734)
T ss_pred C-chHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHH---hhhhhHHHHHHHHHhcCCCCc-hhHHHHHHHhhhh
Confidence 5 55667788888887776543 1111112222222222322 222344555666666665433 2334666666666
Q ss_pred hhccchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcchhhhhcchHHH
Q 000827 695 IRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEF 774 (1265)
Q Consensus 695 l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l 774 (1265)
+....+.+.-..++.+-++++++.. +.......+-+-|+..+.++. ++.-.+++-+..++... +.++..+
T Consensus 248 Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~---p~~~~~~----- 317 (734)
T KOG1061|consen 248 LQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKR---PEILKVE----- 317 (734)
T ss_pred hccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhC---hHHHHhH-----
Confidence 6554433222223444444444433 112222233333444444444 66667776665555443 3322111
Q ss_pred HHHHHHHhhhhhHHHHHH--HHHHHHHHHHhcChhhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 000827 775 FRNFWVRRMALDRRNYKQ--LVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELL 852 (1265)
Q Consensus 775 ~~~~~~~~~~~d~~~~~~--ll~~~~~la~~~g~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~l 852 (1265)
++.|..... ...+-. =++++..++......+++..+..+..+.+..+-+.++.++.++....... ..+
T Consensus 318 ~~~Ff~kyn---DPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~c 387 (734)
T KOG1061|consen 318 IKVFFCKYN---DPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDC 387 (734)
T ss_pred hHeeeeecC---CchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhh
Confidence 111111100 111111 13556666665555566666666666777777778888887776554332 134
Q ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhhcchHHH
Q 000827 853 IDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNN-KSAKVRQQAADLISRIAVVMKQCHEEQL 931 (1265)
Q Consensus 853 l~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d-~~~~VR~~A~~~lg~La~~l~~~~~~~l 931 (1265)
++.++..++-..+-..+.++..+..|...+.... ..+++++-..++. .+|+.|.+-+|.+|+.+..+....
T Consensus 388 v~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~----~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~---- 459 (734)
T KOG1061|consen 388 VSILLELLETKVDYVVQEAIVVIRDILRKYPNKY----ESVVAILCENLDSLQEPEAKAALIWILGEYAERIENAL---- 459 (734)
T ss_pred HHHHHHHHhhcccceeeehhHHHHhhhhcCCCch----hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHH----
Confidence 4445555532111112233444444444444322 3344444444443 368899999999999998776532
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcC--CCHHHHHHHHHHH
Q 000827 932 MGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKN--RHEKVQENCIDLV 1000 (1265)
Q Consensus 932 l~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~--~~~~Vre~ai~~i 1000 (1265)
.++..+.+...|+..+|+-+.+.|.-.+--.... --++++..+++..-+ ++..+|..++.--
T Consensus 460 --elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~-----~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~ 523 (734)
T KOG1061|consen 460 --ELLESFLENFKDETAEVQLELLTAAIKLFLKKPT-----ETQELLQGVLPLATADTDNPDLRDRGLIYW 523 (734)
T ss_pred --HHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCc-----cHHHHHHHHHhhhhccccChhhhhhHHHHH
Confidence 3445556666777788887776665544221111 235555555554322 3356776655433
No 59
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.43 E-value=0.00036 Score=84.19 Aligned_cols=301 Identities=16% Similarity=0.235 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHHhchhh-----hchHHH-HHHHHHHHhcC----C-C--HHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 000827 869 NVMLNGFGAVVNSLGQRV-----KPYLPQ-ICGTIKWRLNN----K-S--AKVRQQAADLISRIAVVMKQCHEEQLMGHL 935 (1265)
Q Consensus 869 ~~al~aL~~I~~~lg~~~-----~p~Lp~-ilp~Ll~~L~d----~-~--~~VR~~A~~~lg~La~~l~~~~~~~ll~~L 935 (1265)
..++.++..+.+...... .-|... ++|.++...-+ . + +.+=..+..+++.+...+....+++++..+
T Consensus 61 ~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~ 140 (415)
T PF12460_consen 61 HAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDEL 140 (415)
T ss_pred HHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 456666666655443222 233333 55555544322 1 2 444444555555555544444445577777
Q ss_pred HHHHHH-----hhC-CCC--HHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhh
Q 000827 936 GVVLYE-----YLG-EEY--PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 936 ~~~L~~-----~L~-d~~--~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~-~~~Vre~ai~~ig~Ia~~ 1006 (1265)
...+.. .+. +.. .......+.-+..++..+..+.--|...+++..++....+. +...|..++.+++.++..
T Consensus 141 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK 220 (415)
T PF12460_consen 141 YSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNK 220 (415)
T ss_pred HHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcC
Confidence 766650 011 111 11233444555566666655555567888999998886654 488899999999999987
Q ss_pred --CCCCcChHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHhh---C-c--HHHHHHHHHhhcccchhhHHHHHHHH
Q 000827 1007 --GAEFVPAREWMRICFELLEML-KAHKKGIRRATVNTFGYIAKAI---G-P--QDVLATLLNNLKVQERQNRVCTTVAI 1077 (1265)
Q Consensus 1007 --~~~~~~~~e~~~il~~LL~~L-k~~~~~iR~~a~~tlg~Ia~~i---G-p--~~vlp~Ll~~L~~~e~~~R~~~~~ai 1077 (1265)
.++. +..++..++..+ .......|..++..+.-|+++. | | ..++..|+.-+.+ ..+...++.++
T Consensus 221 ~~~~~~-----l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f 293 (415)
T PF12460_consen 221 WPDDDD-----LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAF 293 (415)
T ss_pred CCChhh-----HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHH
Confidence 2332 345565555555 3445667888888888888775 2 2 2466777776665 34566677778
Q ss_pred HHHHhhc--------CC----------c-ccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhc-hhhhhhHHhHHHHHHHH
Q 000827 1078 AIVAETC--------SP----------F-TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIG-EMGKDYIYAVTPLLEDA 1137 (1265)
Q Consensus 1078 ~~l~e~~--------gp----------~-~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig-~~~~~yi~~i~PlL~~~ 1137 (1265)
+++.... +. | .++|.|++.++..+...+...+.+|+.+.+++. +....++..++|+|.++
T Consensus 294 ~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqs 373 (415)
T PF12460_consen 294 GILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQS 373 (415)
T ss_pred hhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 7766541 11 2 579999999988776688889999999999885 45677889999999999
Q ss_pred hccCChhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhcc
Q 000827 1138 LMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIF 1181 (1265)
Q Consensus 1138 l~d~d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~ 1181 (1265)
|.-.|..++..+..++..+..... +.+...+..++|.+.
T Consensus 374 L~~~~~~v~~s~L~tL~~~l~~~~-----~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 374 LSLPDADVLLSSLETLKMILEEAP-----ELISEHLSSLIPRLL 412 (415)
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHHH
Confidence 988889899999888877755443 455555555555443
No 60
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00044 Score=84.17 Aligned_cols=381 Identities=15% Similarity=0.173 Sum_probs=196.4
Q ss_pred HhhccCCCCchHHHHHHHHHHHHHHHhhhChhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 000827 571 AAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEII 650 (1265)
Q Consensus 571 ~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l 650 (1265)
..+..|+.|.+.+|--.|-.+++.+++.==.+.|.|-+...+++.+ ...|+-|+.|...+-.... ..+..+++..
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P----~l~e~f~~~~ 184 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVP----DLVEHFVIAF 184 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCc----hHHHHhhHHH
Confidence 4566788888877655444455444433226788888888888876 6778777777765544332 2334456667
Q ss_pred HhhcCCCChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHH
Q 000827 651 EHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVM 730 (1265)
Q Consensus 651 ~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im 730 (1265)
.+.|.+.+.-|=.+++.-+-.+++. .++...+|..+++.|+..+++-.. ..+.++|.
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~-~~~~l~~fr~l~~~lV~iLk~l~~--------------~~yspeyd-------- 241 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKI-SPDALSYFRDLVPSLVKILKQLTN--------------SGYSPEYD-------- 241 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhc--------------CCCCCccC--------
Confidence 7778887777766655554445443 244566777766666654432110 00111110
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHHHHHHHhhhhhHHHHH--HHHHHHHHHHHhcChhh
Q 000827 731 FILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYK--QLVETTVEIANKVGVAD 808 (1265)
Q Consensus 731 ~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~--~ll~~~~~la~~~g~~~ 808 (1265)
.-.-+|+-.+.++++.+.-+-... ++. .+.|-.++.... +..+..++.+ .+.+|...|
T Consensus 242 -----v~gi~dPFLQi~iLrlLriLGq~d---~da--Sd~M~DiLaqva--tntdsskN~GnAILYE~V~TI-------- 301 (866)
T KOG1062|consen 242 -----VHGISDPFLQIRILRLLRILGQND---ADA--SDLMNDILAQVA--TNTDSSKNAGNAILYECVRTI-------- 301 (866)
T ss_pred -----ccCCCchHHHHHHHHHHHHhcCCC---ccH--HHHHHHHHHHHH--hcccccccchhHHHHHHHHHH--------
Confidence 000122223333333332111111 110 112222221111 0011111222 122332211
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhc
Q 000827 809 IVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKP 888 (1265)
Q Consensus 809 il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p 888 (1265)
... ......|-.++.++.+.+..- + ..-|-.++++|..++..=....+
T Consensus 302 -----~~I--~~~~~LrvlainiLgkFL~n~---d---------------------~NirYvaLn~L~r~V~~d~~avq- 349 (866)
T KOG1062|consen 302 -----MDI--RSNSGLRVLAINILGKFLLNR---D---------------------NNIRYVALNMLLRVVQQDPTAVQ- 349 (866)
T ss_pred -----Hhc--cCCchHHHHHHHHHHHHhcCC---c---------------------cceeeeehhhHHhhhcCCcHHHH-
Confidence 111 234456666665555443221 1 11133556666555543333332
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcc
Q 000827 889 YLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMT 968 (1265)
Q Consensus 889 ~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~ 968 (1265)
+--.+|+.||+|++..+|..|.+++-.|... .-+..+..-|+++|...+++++..+...+..+++.+.++
T Consensus 350 ---rHr~tIleCL~DpD~SIkrralELs~~lvn~-------~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 350 ---RHRSTILECLKDPDVSIKRRALELSYALVNE-------SNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred ---HHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc
Confidence 3345667999999999999999988777642 122333444555666667889999999999999988654
Q ss_pred cCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-CCCcChHHHHHHHHHHHHH--HhhchHHHHHHHHHHHHHH
Q 000827 969 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG-AEFVPAREWMRICFELLEM--LKAHKKGIRRATVNTFGYI 1045 (1265)
Q Consensus 969 ~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~-~~~~~~~e~~~il~~LL~~--Lk~~~~~iR~~a~~tlg~I 1045 (1265)
. .--+.+++.+|+..-.-|+.-+...+-+|...+ ++. ..+...++...+... +.-+...+-+.+++|+|.-
T Consensus 420 k-----~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~-~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEY 493 (866)
T KOG1062|consen 420 K-----RWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQEL-HEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEY 493 (866)
T ss_pred c-----hhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcch-hhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhh
Confidence 2 223445555555554456655555555554443 332 222233444333321 1223455677889999998
Q ss_pred HH
Q 000827 1046 AK 1047 (1265)
Q Consensus 1046 a~ 1047 (1265)
+.
T Consensus 494 Gd 495 (866)
T KOG1062|consen 494 GD 495 (866)
T ss_pred hH
Confidence 73
No 61
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.41 E-value=0.00034 Score=84.49 Aligned_cols=186 Identities=18% Similarity=0.196 Sum_probs=141.4
Q ss_pred CCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHh-hhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHH
Q 000827 819 DESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAF-QEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTI 897 (1265)
Q Consensus 819 d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l-~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~L 897 (1265)
..++..|..+.+++..++......+ ....+++.+...+ .....+.+..++..+..|..++=.+-.|.-.+++..|
T Consensus 201 ~~~~~~~~~~~~~la~LvNK~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L 276 (415)
T PF12460_consen 201 SEDEFSRLAALQLLASLVNKWPDDD----DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKL 276 (415)
T ss_pred CCChHHHHHHHHHHHHHHcCCCChh----hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 3447788888888888887764433 1223444444444 1222334567888888898888777778888888889
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHH----hhc--------chHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHh
Q 000827 898 KWRLNNKSAKVRQQAADLISRIAVVM----KQC--------HEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI 965 (1265)
Q Consensus 898 l~~L~d~~~~VR~~A~~~lg~La~~l----~~~--------~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~ 965 (1265)
+.+|.| +.+...|+..++-|..-. ..+ +.++++..+.+.|.+...+...+++.+.+.||..+++.+
T Consensus 277 ~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~v 354 (415)
T PF12460_consen 277 LELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNV 354 (415)
T ss_pred HHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhC
Confidence 999998 778899999998887531 111 124577778888888777777778999999999999999
Q ss_pred CcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCC
Q 000827 966 GMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEF 1010 (1265)
Q Consensus 966 g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~ 1010 (1265)
....+.++++.|+|.|++.|...+..++.+++.++..+....++.
T Consensus 355 P~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~ 399 (415)
T PF12460_consen 355 PKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPEL 399 (415)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHH
Confidence 877888999999999999999999999999999999988875443
No 62
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.32 E-value=4.8e-06 Score=78.00 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCC
Q 000827 868 ANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEY 947 (1265)
Q Consensus 868 ~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~ 947 (1265)
|...+.+|.+++.+++..+.+|++.|++.++.++.|++++||..||+++..|+++.+... -..++.+...|.....|.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCc
Confidence 568899999999999999999999999999999999999999999999999999887533 2246667777788889999
Q ss_pred HHHHHHH
Q 000827 948 PEVLGSI 954 (1265)
Q Consensus 948 ~~V~~~a 954 (1265)
+.|+.++
T Consensus 82 ~~Vr~~a 88 (97)
T PF12755_consen 82 ENVRSAA 88 (97)
T ss_pred hhHHHHH
Confidence 9998877
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.0019 Score=78.80 Aligned_cols=434 Identities=13% Similarity=0.168 Sum_probs=201.1
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhC--hhhHHHHHHHHHc
Q 000827 536 VVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALG--IPALLPFLKAVCQ 613 (1265)
Q Consensus 536 ~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg--~~~Llp~L~~~l~ 613 (1265)
..|..=|...+++|--.|.-++++++..--...+.+-+...+.+.+++||+.|+.|...+.+... ...+++-....+.
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ 189 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLC 189 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHh
Confidence 34444455566666666655555554332222333444556778999999999999888877643 2233333333444
Q ss_pred CCchhHHHHHHHHHHHHHHHHhCCCcchhH----HHHHHHHHhhcC-------C----CChhhHHHHHHHHHHHHHHhCc
Q 000827 614 SKKSWQARHTGIKIVQQIAILIGCAVLPHL----RSLVEIIEHGLN-------D----ENQKVRTITALSLAALAEAAAP 678 (1265)
Q Consensus 614 s~~s~~~R~aal~~L~~i~~~~g~~l~p~L----~~ll~~l~~~L~-------D----e~~~VR~~A~~aL~~lae~~~p 678 (1265)
++. .-.-.+++..+..+|..... ...|. ++++.++.+... | .+|-......+.|.-+... .+
T Consensus 190 ek~-hGVL~~~l~l~~e~c~~~~~-~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~-d~ 266 (866)
T KOG1062|consen 190 EKH-HGVLIAGLHLITELCKISPD-ALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN-DA 266 (866)
T ss_pred hcC-CceeeeHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC-Cc
Confidence 433 33445777777777765332 23343 344444444322 1 3456666666666666654 23
Q ss_pred cchhhhHHhHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhhHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 000827 679 YGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTK-EVMFILIREFQSPDEEMKKIVLKVVKQCVS 757 (1265)
Q Consensus 679 ~~~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~-~im~~L~~~l~~~de~~r~~al~~l~~~~~ 757 (1265)
...+.|..||..++......+..+-+-+-+++..|.-. +.+..++ .-+.+|-+.+.+.|-..|-.++..+..++.
T Consensus 267 daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I----~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~ 342 (866)
T KOG1062|consen 267 DASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI----RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQ 342 (866)
T ss_pred cHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc----cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhc
Confidence 44566778888887766544422222222332222100 0011111 123334444455555555555555555544
Q ss_pred ccCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 000827 758 TEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVA 837 (1265)
Q Consensus 758 ~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~ 837 (1265)
.+ +..+. .--..++..+ ...|...-+..++....+.+.-....++..++..+....+.++..++..|..++.
T Consensus 343 ~d---~~avq-rHr~tIleCL----~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 343 QD---PTAVQ-RHRSTILECL----KDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELAE 414 (866)
T ss_pred CC---cHHHH-HHHHHHHHHh----cCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 32 11110 0000000100 0011111112223223333333334455555666655566666666666666665
Q ss_pred hhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHH-HHHHhch-----hhhchHHHHHHHHHHHhcCCCHHHHHH
Q 000827 838 NLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGA-VVNSLGQ-----RVKPYLPQICGTIKWRLNNKSAKVRQQ 911 (1265)
Q Consensus 838 ~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~-I~~~lg~-----~~~p~Lp~ilp~Ll~~L~d~~~~VR~~ 911 (1265)
.+..+. +. -+|.++..|....+-++.-++..|-. |+++.+. ..+=|+...... .+.-..+..-+.
T Consensus 415 kfaP~k---~W---~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~---~~~is~e~l~qV 485 (866)
T KOG1062|consen 415 KFAPDK---RW---HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDT---LLDISQEPLLQV 485 (866)
T ss_pred hcCCcc---hh---HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhh---hhhhhhhhHHHH
Confidence 553321 11 12222222321111011111111111 2222121 111222222211 112234445678
Q ss_pred HHHHHHHHHHHHhh--c-------chHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHH
Q 000827 912 AADLISRIAVVMKQ--C-------HEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLT 982 (1265)
Q Consensus 912 A~~~lg~La~~l~~--~-------~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll 982 (1265)
|+|+||.....+-. | .++.++..|..++.....+ ..+++-++.||-.|...+... .+.|=..+.
T Consensus 486 a~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~--~~tk~yal~Al~KLSsr~~s~-----~~ri~~lI~ 558 (866)
T KOG1062|consen 486 ASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSD--STTKGYALTALLKLSSRFHSS-----SERIKQLIS 558 (866)
T ss_pred HHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHhhcccc-----HHHHHHHHH
Confidence 99999999965432 1 1245666666666543333 678888888988887766432 222222222
Q ss_pred HHhcCCCHHHHHHHHHHH
Q 000827 983 PILKNRHEKVQENCIDLV 1000 (1265)
Q Consensus 983 ~~L~~~~~~Vre~ai~~i 1000 (1265)
....+.+-.+|..+++.=
T Consensus 559 ~~~~s~~~elQQRa~E~~ 576 (866)
T KOG1062|consen 559 SYKSSLDTELQQRAVEYN 576 (866)
T ss_pred HhcccccHHHHHHHHHHH
Confidence 222334455666655443
No 64
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0049 Score=74.40 Aligned_cols=87 Identities=15% Similarity=0.152 Sum_probs=64.3
Q ss_pred hHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchh
Q 000827 603 ALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIE 682 (1265)
Q Consensus 603 ~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~ 682 (1265)
.|-+=+..++++.+ ...|.-|+..+..++..-...+.|-++ .+..-|.|+++.|..+|+..+|-||.--+.
T Consensus 144 DLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr~~Fp----rL~EkLeDpDp~V~SAAV~VICELArKnPk---- 214 (877)
T KOG1059|consen 144 DLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALRPCFP----RLVEKLEDPDPSVVSAAVSVICELARKNPQ---- 214 (877)
T ss_pred HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHhhhHH----HHHHhccCCCchHHHHHHHHHHHHHhhCCc----
Confidence 55666667777777 679999999999888766655555444 445668899999999999999999987653
Q ss_pred hhHHhHHHHHHhhhcc
Q 000827 683 SFDSVLKPLWKGIRSH 698 (1265)
Q Consensus 683 ~~~~iL~~L~~~l~~~ 698 (1265)
+|-++-|.+|+.+.+.
T Consensus 215 nyL~LAP~ffkllttS 230 (877)
T KOG1059|consen 215 NYLQLAPLFYKLLVTS 230 (877)
T ss_pred ccccccHHHHHHHhcc
Confidence 3345666777766544
No 65
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.22 E-value=0.012 Score=73.77 Aligned_cols=203 Identities=15% Similarity=0.121 Sum_probs=121.5
Q ss_pred ccCCCHhHHHHHHHHHHHHHhhcCC--hhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhh
Q 000827 464 VKNGTPPQRKTALRQLTDKAREFGA--GPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPL 541 (1265)
Q Consensus 464 lkn~~~~vR~~A~r~L~~~A~~~G~--~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~l 541 (1265)
+.++..+.|..|+|.+-..- ..|. ..+|..++..+... +-+-+.++--.+.+.+..-+.. +--.++.+..=
T Consensus 28 l~s~n~~~kidAmK~iIa~M-~~G~dmssLf~dViK~~~tr--d~ElKrL~ylYl~~yak~~P~~----~lLavNti~kD 100 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQM-SLGEDMSSLFPDVIKNVATR--DVELKRLLYLYLERYAKLKPEL----ALLAVNTIQKD 100 (757)
T ss_pred ccccChHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhccCHHH----HHHHHHHHHhh
Confidence 66777889999999885432 3453 24677777777743 3343433333343333333321 22334555666
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhC--hhh--HHHHHHHHHcCCch
Q 000827 542 LIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALG--IPA--LLPFLKAVCQSKKS 617 (1265)
Q Consensus 542 L~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg--~~~--Llp~L~~~l~s~~s 617 (1265)
+.|+++.+|-.|...++.+-...=+..++..++..++|+..|||++|+-|+..+-+.-. .++ +.-.+..++.+.+
T Consensus 101 l~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~d- 179 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSD- 179 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCC-
Confidence 77889999998888877765554556777888889999999999999988888775522 222 3445555666655
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcC-CCChhhHHHHHHHHHHHHHHhC
Q 000827 618 WQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLN-DENQKVRTITALSLAALAEAAA 677 (1265)
Q Consensus 618 ~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~-De~~~VR~~A~~aL~~lae~~~ 677 (1265)
+.....|+.++..|... ...+|...+...|.+..- ..+.-.+..-..-++.+.+...
T Consensus 180 P~Vi~nAl~sl~~i~~e---~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~ 237 (757)
T COG5096 180 PIVIANALASLAEIDPE---LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVP 237 (757)
T ss_pred chHHHHHHHHHHHhchh---hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCC
Confidence 56777777777766554 234555555544444221 1111124444444555554443
No 66
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=0.0071 Score=73.16 Aligned_cols=227 Identities=17% Similarity=0.140 Sum_probs=135.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHH
Q 000827 946 EYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLE 1025 (1265)
Q Consensus 946 ~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~ 1025 (1265)
+++.|+-.+|-+|+-. .+|.. -.++...+-.+|.+.+--.-|+|.-++|.+.-..... ..+..++.
T Consensus 426 ~~e~v~hG~cLGlGLa--~mGSa-----~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~-------eaiedm~~ 491 (929)
T KOG2062|consen 426 ENEVVRHGACLGLGLA--GMGSA-----NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ-------EAIEDMLT 491 (929)
T ss_pred cchhhhhhhhhhccch--hcccc-----cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH-------HHHHHHHH
Confidence 3556777777666644 24433 3678888888888877666788888888776542211 23333443
Q ss_pred HHhh--chHHHHHHHHHHHHHHHHhhCcHH-HHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhh-cCCCc
Q 000827 1026 MLKA--HKKGIRRATVNTFGYIAKAIGPQD-VLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNE-YRVPE 1101 (1265)
Q Consensus 1026 ~Lk~--~~~~iR~~a~~tlg~Ia~~iGp~~-vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~-~~~~~ 1101 (1265)
.... +.+-+|..++ .|..+ ..|-+. .-+.+-..+++.++-+|.+..++++.-.-..|...++-.|+.- ..+++
T Consensus 492 Ya~ETQHeki~RGl~v-GiaL~--~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~n 568 (929)
T KOG2062|consen 492 YAQETQHEKIIRGLAV-GIALV--VYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVN 568 (929)
T ss_pred HhhhhhHHHHHHHHHH-hHHHH--HhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccc
Confidence 3322 2444454432 22222 245443 3333333456778889988877765433222344566666654 44556
Q ss_pred hhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccC-ChhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhc
Q 000827 1102 LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDR-DLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNI 1180 (1265)
Q Consensus 1102 ~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~-d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i 1180 (1265)
..|+..+.-+++|++-. + +...|-....|.+. +++||.-|+-+++ +.|.|.|.. ..++.+-|-+
T Consensus 569 DDVrRaAVialGFVl~~------d--p~~~~s~V~lLses~N~HVRyGaA~ALG---IaCAGtG~~----eAi~lLepl~ 633 (929)
T KOG2062|consen 569 DDVRRAAVIALGFVLFR------D--PEQLPSTVSLLSESYNPHVRYGAAMALG---IACAGTGLK----EAINLLEPLT 633 (929)
T ss_pred hHHHHHHHHHheeeEec------C--hhhchHHHHHHhhhcChhhhhhHHHHHh---hhhcCCCcH----HHHHHHhhhh
Confidence 67888888888876521 1 12233333445555 7888888876665 456666665 4556666667
Q ss_pred ccCChHHHHHHHHHHHHHHHHhCH
Q 000827 1181 FETSPHVINAVMEAIEGMRVALGA 1204 (1265)
Q Consensus 1181 ~~~s~~v~~~~~~a~~~~~~~~g~ 1204 (1265)
.++..-||+.++=++.-+..+..+
T Consensus 634 ~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 634 SDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred cChHHHHHHHHHHHHHHHHHhccc
Confidence 777788999988887766665544
No 67
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00072 Score=75.13 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=83.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCc----
Q 000827 893 ICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMG-HLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM---- 967 (1265)
Q Consensus 893 ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~-~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~---- 967 (1265)
.+|.+..++.|..-.||+..--++..++-.- .+.+.++. .++++|+++++++..+|+.++..||.++.+.+..
T Consensus 377 Ai~kl~eL~lD~pvsvqseisac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~Yarv 454 (550)
T KOG4224|consen 377 AIPKLIELLLDGPVSVQSEISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARV 454 (550)
T ss_pred chHHHHHHHhcCChhHHHHHHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHH
Confidence 5677778899999999998888888877421 11133443 3778889999999999999999999999875531
Q ss_pred -ccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCC
Q 000827 968 -TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGA 1008 (1265)
Q Consensus 968 -~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~ 1008 (1265)
+....+.+.+-..|...+.++.-.++.-+..+|-+++..+.
T Consensus 455 iEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 455 IEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred HHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 11223446777778888887777778888888888887643
No 68
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.13 E-value=2.6e-05 Score=85.43 Aligned_cols=280 Identities=17% Similarity=0.114 Sum_probs=163.1
Q ss_pred HHHHHHHHHhchhhhchHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcch----HHHHHHHHHHHHHhhCCCC
Q 000827 873 NGFGAVVNSLGQRVKPYLP-QICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHE----EQLMGHLGVVLYEYLGEEY 947 (1265)
Q Consensus 873 ~aL~~I~~~lg~~~~p~Lp-~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~----~~ll~~L~~~L~~~L~d~~ 947 (1265)
=+|..|+.+...+.+-.+. ..+|.++.+|.+.+..||+++.|+||.||.--..|-+ -..|..++.++... -..
T Consensus 137 WalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss--~~~ 214 (526)
T COG5064 137 WALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSS--AIH 214 (526)
T ss_pred HHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhc--cch
Confidence 3556666655544332332 2678888999999999999999999999853222211 01244444444311 112
Q ss_pred HHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHH
Q 000827 948 PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEML 1027 (1265)
Q Consensus 948 ~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~L 1027 (1265)
-.+..++.|.|.+++..-.+.-=-..+.+.+|.|.+++...+..|-.-|+.+|..|.....+.+...-=..+...|++.|
T Consensus 215 ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElL 294 (526)
T COG5064 215 ISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELL 294 (526)
T ss_pred HHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHh
Confidence 35678899999999874432111124678899999999999999999999999999875333221110012233466777
Q ss_pred hhchHHHHHHHHHHHHHHHHhhCcH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhh-------cCCcccHHHH
Q 000827 1028 KAHKKGIRRATVNTFGYIAKAIGPQ-------DVLATLLNNLKVQERQNRVCTTVAIAIVAET-------CSPFTVLPAL 1093 (1265)
Q Consensus 1028 k~~~~~iR~~a~~tlg~Ia~~iGp~-------~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~-------~gp~~vlPaL 1093 (1265)
..+...+..-+++.+|.|...-.-+ -+++++..-|..+..++|--+...|+-+... .-...++|.|
T Consensus 295 s~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpL 374 (526)
T COG5064 295 SHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPL 374 (526)
T ss_pred cCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHH
Confidence 7776667666777777765321111 1445554445555555664433333332110 0012568888
Q ss_pred HhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhH-----HhHHHHHHHHhccCChhHHHHHHHHHHH
Q 000827 1094 MNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYI-----YAVTPLLEDALMDRDLVHRQTAASAVKH 1155 (1265)
Q Consensus 1094 ~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi-----~~i~PlL~~~l~d~d~~~Rq~A~~~l~~ 1155 (1265)
++.+.+.+...+..+|-+++.... .|..-++.+ +-++..|.+.|.-.|.-+-|.+..++..
T Consensus 375 i~lls~ae~k~kKEACWAisNats-gg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~en 440 (526)
T COG5064 375 IHLLSSAEYKIKKEACWAISNATS-GGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIEN 440 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-cccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHH
Confidence 888888877788777777765432 122222222 2233445555554555455556555543
No 69
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.08 E-value=0.00026 Score=84.06 Aligned_cols=208 Identities=14% Similarity=0.097 Sum_probs=140.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCcc
Q 000827 894 CGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPP 973 (1265)
Q Consensus 894 lp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~ 973 (1265)
+..|+..|.|.++.||.+++.+||.+-. . .....|...|++.++.|+..++.+++....
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------~----~a~~~L~~~L~~~~p~vR~aal~al~~r~~---------- 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-------R----QAEPWLEPLLAASEPPGRAIGLAALGAHRH---------- 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc-------h----HHHHHHHHHhcCCChHHHHHHHHHHHhhcc----------
Confidence 6667799999999999999999985432 1 223445556688899999988877776321
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcHH
Q 000827 974 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQD 1053 (1265)
Q Consensus 974 l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~ 1053 (1265)
+-.+.+...|++.+..||..++.++|.|... ..+..|...+.+.+..+|+.|+.+++.+ |...
T Consensus 147 --~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~l----G~~~ 209 (410)
T TIGR02270 147 --DPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLA----GSRL 209 (410)
T ss_pred --ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHc----CCHh
Confidence 1235678888899999999999999988753 2334455667889999999999999765 4455
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHHH
Q 000827 1054 VLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPL 1133 (1265)
Q Consensus 1054 vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~Pl 1133 (1265)
....|+..+.......+...+..+ ...|...+++.|....+.+. ++..++.+++.+ |. ...+|.
T Consensus 210 A~~~l~~~~~~~g~~~~~~l~~~l----al~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~l----g~------p~av~~ 273 (410)
T TIGR02270 210 AWGVCRRFQVLEGGPHRQRLLVLL----AVAGGPDAQAWLRELLQAAA--TRREALRAVGLV----GD------VEAAPW 273 (410)
T ss_pred HHHHHHHHHhccCccHHHHHHHHH----HhCCchhHHHHHHHHhcChh--hHHHHHHHHHHc----CC------cchHHH
Confidence 555555544433333322222222 12244466777777777664 787887777643 32 234455
Q ss_pred HHHHhccCChhHHHHHHHHHHHHH
Q 000827 1134 LEDALMDRDLVHRQTAASAVKHMA 1157 (1265)
Q Consensus 1134 L~~~l~d~d~~~Rq~A~~~l~~la 1157 (1265)
|...+.|. .+++.|.++++.|+
T Consensus 274 L~~~l~d~--~~aR~A~eA~~~It 295 (410)
T TIGR02270 274 CLEAMREP--PWARLAGEAFSLIT 295 (410)
T ss_pred HHHHhcCc--HHHHHHHHHHHHhh
Confidence 55555543 39999999998775
No 70
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.03 E-value=0.00021 Score=90.39 Aligned_cols=157 Identities=19% Similarity=0.233 Sum_probs=121.9
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHH
Q 000827 815 EDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQIC 894 (1265)
Q Consensus 815 ~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~il 894 (1265)
..++|.+..+-..++.+|..|+..++... ..+...+++.++..+.+..+..+.+++.++..+++. -.|..+.
T Consensus 302 i~~kDaN~~v~~~aa~~l~~ia~~lr~~~--~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~ 373 (815)
T KOG1820|consen 302 IRLKDANINVVMLAAQILELIAKKLRPLF--RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMS 373 (815)
T ss_pred HhccCcchhHHHHHHHHHHHHHHhcchhh--HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHH
Confidence 34567777777788888888888876653 345556677778888776666667777777777773 2456777
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCcc
Q 000827 895 GTIKWRLNNKSAKVRQQAADLISRIAVVMK-QCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPP 973 (1265)
Q Consensus 895 p~Ll~~L~d~~~~VR~~A~~~lg~La~~l~-~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~ 973 (1265)
+.++..+++.++.+|..+...+.+....+. .+....-+..+.+.++...+|.+++||..+..++..+...+|...+..+
T Consensus 374 ~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~ 453 (815)
T KOG1820|consen 374 EAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKL 453 (815)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888899999999999999999999998887 3333456777888888888999999999999999999999998766666
Q ss_pred HHhHHH
Q 000827 974 IKDLLP 979 (1265)
Q Consensus 974 l~~Llp 979 (1265)
+..+-+
T Consensus 454 L~~~~~ 459 (815)
T KOG1820|consen 454 LKDLDK 459 (815)
T ss_pred HHhhcc
Confidence 655554
No 71
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.98 E-value=0.00027 Score=89.34 Aligned_cols=183 Identities=21% Similarity=0.300 Sum_probs=149.0
Q ss_pred hHHHHHHHHHHHHHHhc-hhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCC
Q 000827 867 DANVMLNGFGAVVNSLG-QRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGE 945 (1265)
Q Consensus 867 d~~~al~aL~~I~~~lg-~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d 945 (1265)
+|..++..+..+++.-+ .....|...+...+...+.|.+-.|-..|+.+|..|+..++..+ ..+...+++.++++++|
T Consensus 269 ~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~-~~~~~~v~p~lld~lke 347 (815)
T KOG1820|consen 269 DRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF-RKYAKNVFPSLLDRLKE 347 (815)
T ss_pred HHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh-HHHHHhhcchHHHHhhh
Confidence 34556666666665544 33456777777777788999999999999999999999998765 45777788889999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-CCCCcChHHHHHHHHHHH
Q 000827 946 EYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR-GAEFVPAREWMRICFELL 1024 (1265)
Q Consensus 946 ~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~-~~~~~~~~e~~~il~~LL 1024 (1265)
..+.++..+..++..+++.. .+..+++.+...+++.+..++..|..+++..... ++..+.......+++.++
T Consensus 348 kk~~l~d~l~~~~d~~~ns~-------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~ 420 (815)
T KOG1820|consen 348 KKSELRDALLKALDAILNST-------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLI 420 (815)
T ss_pred ccHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHh
Confidence 99999999999999999844 4678889999999999999999999999988877 434444445667888888
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhhCcHHHHHH
Q 000827 1025 EMLKAHKKGIRRATVNTFGYIAKAIGPQDVLAT 1057 (1265)
Q Consensus 1025 ~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~ 1057 (1265)
...+|....+|.+|.++++.+.+..|...+...
T Consensus 421 ~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~ 453 (815)
T KOG1820|consen 421 KHINDTDKDVRKAALEAVAAVMKVHGEEVFKKL 453 (815)
T ss_pred hhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888899999999999999999999997644433
No 72
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.00089 Score=74.42 Aligned_cols=388 Identities=13% Similarity=0.104 Sum_probs=193.2
Q ss_pred HHHcCCchhHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhh-hHHh
Q 000827 610 AVCQSKKSWQARHTGIKIVQQIAILIGC-AVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIES-FDSV 687 (1265)
Q Consensus 610 ~~l~s~~s~~~R~aal~~L~~i~~~~g~-~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~-~~~i 687 (1265)
..+++.+ .....+|-.++|.++..++. .+.-.+..+=+.|.+.+.| +..||..++.|+-+++..-.. ..+- .---
T Consensus 92 ~llqs~d-~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~n-k~kiA~sGa 168 (550)
T KOG4224|consen 92 ALLQSCD-KCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSN-KVKIARSGA 168 (550)
T ss_pred HHHhCcc-hhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccc-hhhhhhccc
Confidence 3455544 45566777788877777663 4444455555566666655 668899999999999876321 1110 0122
Q ss_pred HHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhh---hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcch
Q 000827 688 LKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASY---YTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEAD 764 (1265)
Q Consensus 688 L~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~---~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~ 764 (1265)
|.++.+..+..+-++.-... +.+.. |...+-+. -...-+++|+..+++.|.+++.-+..++..+.-..
T Consensus 169 L~pltrLakskdirvqrnat---gaLln-mThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~----- 239 (550)
T KOG4224|consen 169 LEPLTRLAKSKDIRVQRNAT---GALLN-MTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR----- 239 (550)
T ss_pred hhhhHhhcccchhhHHHHHH---HHHHH-hhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH-----
Confidence 44444422211111111111 11110 11100000 00012456777777777777766655554432111
Q ss_pred hhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCc
Q 000827 765 YIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDI 844 (1265)
Q Consensus 765 ~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~ 844 (1265)
.+.+.+.++ .+.+++.+++.+.|.+.+++-++..++..+.....-.
T Consensus 240 -----------------------~~Rk~Laqa---------ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq-- 285 (550)
T KOG4224|consen 240 -----------------------RARKILAQA---------EPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ-- 285 (550)
T ss_pred -----------------------HHHHHHHhc---------ccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh--
Confidence 111111111 1234566666667777777766666555443221000
Q ss_pred hhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHH-HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Q 000827 845 DARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQ-ICGTIKWRLNNK-SAKVRQQAADLISRIAVV 922 (1265)
Q Consensus 845 ~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~-ilp~Ll~~L~d~-~~~VR~~A~~~lg~La~~ 922 (1265)
-+-...--++.++..+|+...+.-.+.+-++..|.-.-+.. .+...+ ++..|+.+|.-. +++++-.|.+++-.+|..
T Consensus 286 ~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 286 REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence 00001112344455554433222112222221122111111 122222 344455677655 567999999999999864
Q ss_pred HhhcchHHHH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccH--HhHHHHHHHHhcCCCHHHHHHHHHH
Q 000827 923 MKQCHEEQLM-GHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPI--KDLLPRLTPILKNRHEKVQENCIDL 999 (1265)
Q Consensus 923 l~~~~~~~ll-~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l--~~Llp~Ll~~L~~~~~~Vre~ai~~ 999 (1265)
-.... ..+. ..-++.+.+.+-|..-+|++.+-.|+..++-. +..+.++ ..++|.|++++.+.+.+||.++..+
T Consensus 365 se~n~-~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~---d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaA 440 (550)
T KOG4224|consen 365 SEHNV-SVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN---DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAA 440 (550)
T ss_pred hhhhh-HHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc---cccHHHHhhcCCcceeecccCccchhhcccHHHH
Confidence 33211 0110 11223333444566667888777777776531 1222232 4588999999999999999999999
Q ss_pred HHHHHhhCCCCcChH-HH----HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 000827 1000 VGRIADRGAEFVPAR-EW----MRICFELLEMLKAHKKGIRRATVNTFGYIAKA 1048 (1265)
Q Consensus 1000 ig~Ia~~~~~~~~~~-e~----~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~ 1048 (1265)
++.+++.-.++.-.. .| ..+-.-|...++++....|..+..|+..+++.
T Consensus 441 L~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 441 LINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLED 494 (550)
T ss_pred HHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 999887633321111 11 11222234445566666666666676666554
No 73
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.97 E-value=0.0015 Score=75.16 Aligned_cols=194 Identities=17% Similarity=0.281 Sum_probs=132.4
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc--hhhhchH
Q 000827 813 IVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLG--QRVKPYL 890 (1265)
Q Consensus 813 i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg--~~~~p~L 890 (1265)
.++.+.+++...|..++..+.+++..--..+.-......+++.++..+.....++...++.+++-++-.+| ......+
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 34555677788999988888777654321111111223456666666644333455567777888877766 5566778
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHhhcch--HHHHHHHHHHHH-Hhh--C--------CCCHHHHHHHH
Q 000827 891 PQICGTIKWRLNNK--SAKVRQQAADLISRIAVVMKQCHE--EQLMGHLGVVLY-EYL--G--------EEYPEVLGSIL 955 (1265)
Q Consensus 891 p~ilp~Ll~~L~d~--~~~VR~~A~~~lg~La~~l~~~~~--~~ll~~L~~~L~-~~L--~--------d~~~~V~~~al 955 (1265)
..+.|.|...++|. +..+|.+++.+||-++-+.....+ ...+..+-.++. ... + .+++.|..+++
T Consensus 128 ~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL 207 (309)
T PF05004_consen 128 EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAAL 207 (309)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHH
Confidence 88889999999986 467899999999977765443221 112233332221 111 1 12357899999
Q ss_pred HHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000827 956 GALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 956 ~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~ 1006 (1265)
.+-+-++..+....+...+...+|.|...|...+..||.+|..+|+.|.+.
T Consensus 208 ~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 208 SAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 999999887766556667888999999999999999999999999999876
No 74
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.0029 Score=75.52 Aligned_cols=242 Identities=17% Similarity=0.150 Sum_probs=152.9
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--CCC--cCh-HHH
Q 000827 942 YLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG--AEF--VPA-REW 1016 (1265)
Q Consensus 942 ~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~--~~~--~~~-~e~ 1016 (1265)
+.++.++.|+.+++.+|-.+.+.+. + -+.+..+..+.+++....||.+|+.++...+..- +.. -.. +-.
T Consensus 206 ~~~~~D~~Vrt~A~eglL~L~eg~k---L---~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~ 279 (823)
T KOG2259|consen 206 LEHDQDFRVRTHAVEGLLALSEGFK---L---SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK 279 (823)
T ss_pred HhcCCCcchHHHHHHHHHhhccccc---c---cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH
Confidence 3478889999999999999888442 1 2567888889999999999999999998887763 211 111 112
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcHHHHHH----HHHhhcccchh-hHHHHHHHHHHH-----------
Q 000827 1017 MRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLAT----LLNNLKVQERQ-NRVCTTVAIAIV----------- 1080 (1265)
Q Consensus 1017 ~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~----Ll~~L~~~e~~-~R~~~~~ai~~l----------- 1080 (1265)
...+..+...+.+-.-.+|..|.+.||.+.. +..+-+..+ +|.+++---.. -|-...++=|-.
T Consensus 280 D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~-vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advp 358 (823)
T KOG2259|consen 280 DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQ-VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVP 358 (823)
T ss_pred HHHHHHHHHHHhcCceeeeehHHHHhchHHH-hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCc
Confidence 3444555667777788899999999998753 222223333 34433210000 000000000000
Q ss_pred Hhh--cCCcccHH-----HHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHHHHHHH
Q 000827 1081 AET--CSPFTVLP-----ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAV 1153 (1265)
Q Consensus 1081 ~e~--~gp~~vlP-----aL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l 1153 (1265)
.|. -+...++| +++..+.+.=..|+.++..+++.+.. ....|....+.+|.+.++|+..++|-.|+.++
T Consensus 359 see~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~----ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL 434 (823)
T KOG2259|consen 359 SEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLAT----SSPGFAVRALDFLVDMFNDEIEVVRLKAIFAL 434 (823)
T ss_pred hhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 000 00012333 33333333334688888777776642 34556677788999999999999999999999
Q ss_pred HHHHhcccCCCchhHHHHHHHhhhhhcccCChHHHHHHHHHHHHHHH
Q 000827 1154 KHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRV 1200 (1265)
Q Consensus 1154 ~~lal~~~g~~~e~~~~~~ln~l~~~i~~~s~~v~~~~~~a~~~~~~ 1200 (1265)
++++... .-.| ..|+.++..|-+.+++||.+..+.+...+.
T Consensus 435 ~~Is~~l--~i~e----eql~~il~~L~D~s~dvRe~l~elL~~~~~ 475 (823)
T KOG2259|consen 435 TMISVHL--AIRE----EQLRQILESLEDRSVDVREALRELLKNARV 475 (823)
T ss_pred HHHHHHh--eecH----HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 9987652 2223 467778888899999999999887765554
No 75
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.92 E-value=0.0023 Score=75.09 Aligned_cols=213 Identities=23% Similarity=0.329 Sum_probs=144.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccC
Q 000827 891 PQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKM 970 (1265)
Q Consensus 891 p~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l 970 (1265)
+..+..++..+.++++.||..|+..++.+.. ... ++.+...+.|.++.||..+..+|+.+-.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-------~~a----v~~l~~~l~d~~~~vr~~a~~aLg~~~~------- 103 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELGS-------EEA----VPLLRELLSDEDPRVRDAAADALGELGD------- 103 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhch-------HHH----HHHHHHHhcCCCHHHHHHHHHHHHccCC-------
Confidence 4566677799999999999999999776553 222 3334455688889999999998877742
Q ss_pred CccHHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhch------------HHHHHH
Q 000827 971 TPPIKDLLPRLTPILK-NRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHK------------KGIRRA 1037 (1265)
Q Consensus 971 ~p~l~~Llp~Ll~~L~-~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~------------~~iR~~ 1037 (1265)
+..++.|+..|. +.+..||..|..++|.+-.. +.+..+++.+++.. ..+|..
T Consensus 104 ----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 104 ----PEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred ----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 456677888787 58899999999999987653 33455555555533 357888
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCchhHHHHHHHHHHHHHH
Q 000827 1038 TVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFE 1117 (1265)
Q Consensus 1038 a~~tlg~Ia~~iGp~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~ 1117 (1265)
++..++.+ |.....+.|...++.....+|...+.+++.+.... ..+.+.+.....+++..++...+.+++.+
T Consensus 169 a~~~l~~~----~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--~~~~~~l~~~~~~~~~~vr~~~~~~l~~~-- 240 (335)
T COG1413 169 AAEALGEL----GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--VEAADLLVKALSDESLEVRKAALLALGEI-- 240 (335)
T ss_pred HHHHHHHc----CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--hhHHHHHHHHhcCCCHHHHHHHHHHhccc--
Confidence 88887764 55567777778888887788888888877765532 13345666667777777887777666432
Q ss_pred HhchhhhhhHHhHHHHHHHHhccCChhHHHHHHHH
Q 000827 1118 YIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASA 1152 (1265)
Q Consensus 1118 ~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~ 1152 (1265)
| . ....+.+...+.+.+...+..+...
T Consensus 241 --~---~---~~~~~~l~~~l~~~~~~~~~~~~~~ 267 (335)
T COG1413 241 --G---D---EEAVDALAKALEDEDVILALLAAAA 267 (335)
T ss_pred --C---c---chhHHHHHHHHhccchHHHHHHHHH
Confidence 1 1 2233344445666666665555443
No 76
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.91 E-value=0.0016 Score=77.51 Aligned_cols=240 Identities=15% Similarity=0.059 Sum_probs=147.4
Q ss_pred hhHHHHHHHh-cCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhh
Q 000827 808 DIVGRIVEDL-KDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRV 886 (1265)
Q Consensus 808 ~il~~i~~~l-~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~ 886 (1265)
..+..+...+ .++...++..++-.+. ..++ . ..++.++..+.+....++..+..+||.+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~------~~~~--~----~~~~~L~~~L~d~~~~vr~aaa~ALg~i-------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL------AQED--A----LDLRSVLAVLQAGPEGLCAGIQAALGWL-------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh------ccCC--h----HHHHHHHHHhcCCCHHHHHHHHHHHhcC--------
Confidence 3456666667 4666666654443332 1111 1 1244455566443333566666676632
Q ss_pred hchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000827 887 KPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 966 (1265)
Q Consensus 887 ~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g 966 (1265)
..++..+.|...|++.++.||.+++.+++.... .- .+.+...|+|+++.|+..++.+|+.+-.
T Consensus 114 --~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--------~~----~~~L~~~L~d~d~~Vra~A~raLG~l~~--- 176 (410)
T TIGR02270 114 --GGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--------DP----GPALEAALTHEDALVRAAALRALGELPR--- 176 (410)
T ss_pred --CchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--------Ch----HHHHHHHhcCCCHHHHHHHHHHHHhhcc---
Confidence 236677888899999999999999888876221 11 1234445679999999999999999854
Q ss_pred cccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 000827 967 MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIA 1046 (1265)
Q Consensus 967 ~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia 1046 (1265)
...++.|...+.+.+..||..|+.+++.+... ..+..++..........+..+...++..
T Consensus 177 --------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~-----------~A~~~l~~~~~~~g~~~~~~l~~~lal~- 236 (410)
T TIGR02270 177 --------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSR-----------LAWGVCRRFQVLEGGPHRQRLLVLLAVA- 236 (410)
T ss_pred --------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCH-----------hHHHHHHHHHhccCccHHHHHHHHHHhC-
Confidence 23556677889999999999999998766431 1122223223333323333333333322
Q ss_pred HhhCcHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCchhHHHHHHHHHHHH
Q 000827 1047 KAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFL 1115 (1265)
Q Consensus 1047 ~~iGp~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~vl~al~~l 1115 (1265)
|....+..|..-++.+. +|..++.++|.+.. -..+|.|+..+.++. +.-.+-.+|+.|
T Consensus 237 ---~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~----p~av~~L~~~l~d~~--~aR~A~eA~~~I 294 (410)
T TIGR02270 237 ---GGPDAQAWLRELLQAAA--TRREALRAVGLVGD----VEAAPWCLEAMREPP--WARLAGEAFSLI 294 (410)
T ss_pred ---CchhHHHHHHHHhcChh--hHHHHHHHHHHcCC----cchHHHHHHHhcCcH--HHHHHHHHHHHh
Confidence 55677777777776654 78888888776533 245788888776653 555555666554
No 77
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.0063 Score=70.08 Aligned_cols=170 Identities=18% Similarity=0.188 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhc------chHHHHHHHHHHHHHhh--CC-CCHHHHHHHHHHHHHH
Q 000827 891 PQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQC------HEEQLMGHLGVVLYEYL--GE-EYPEVLGSILGALKAI 961 (1265)
Q Consensus 891 p~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~------~~~~ll~~L~~~L~~~L--~d-~~~~V~~~al~aL~~l 961 (1265)
......++..|.|+...+|..++|++|.|...+... +.+.+...++..+.... .+ ....|+.++..||+++
T Consensus 432 ~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnl 511 (728)
T KOG4535|consen 432 ADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNL 511 (728)
T ss_pred HHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhH
Confidence 334444556667777778888888888888765321 22333333333333221 11 2246999999999999
Q ss_pred HHHhCcccCCccHHhHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHH-HHHhhc-hHHH
Q 000827 962 VNVIGMTKMTPPIKDLLPRLTPILK-----NRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELL-EMLKAH-KKGI 1034 (1265)
Q Consensus 962 v~~~g~~~l~p~l~~Llp~Ll~~L~-----~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL-~~Lk~~-~~~i 1034 (1265)
.+.+.+ ...+-+.+++..-...+- ..+-+||=|++.++|.+.++..--+....|-.+++..| ..+.+. +..+
T Consensus 512 lQvlq~-i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKV 590 (728)
T KOG4535|consen 512 LQFLQP-IEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKV 590 (728)
T ss_pred HHHHHH-hhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceE
Confidence 887631 122333344432222222 23478999999999999988332122223766666544 333433 5678
Q ss_pred HHHHHHHHHHHHHhhCcHHHHHHHHHh
Q 000827 1035 RRATVNTFGYIAKAIGPQDVLATLLNN 1061 (1265)
Q Consensus 1035 R~~a~~tlg~Ia~~iGp~~vlp~Ll~~ 1061 (1265)
|..|+.++...++-.|-.+-++-++++
T Consensus 591 Ri~AA~aL~vp~~re~~~d~~~Lsw~~ 617 (728)
T KOG4535|consen 591 RIRAAAALSVPGKREQYGDQYALSWNA 617 (728)
T ss_pred eehhhhhhcCCCCcccchhHHhHHHHH
Confidence 888888888877766666666655554
No 78
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0039 Score=72.56 Aligned_cols=138 Identities=14% Similarity=0.160 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHhchh-hh--chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcc---hHHHHHHHHHHHHHh
Q 000827 869 NVMLNGFGAVVNSLGQR-VK--PYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCH---EEQLMGHLGVVLYEY 942 (1265)
Q Consensus 869 ~~al~aL~~I~~~lg~~-~~--p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~---~~~ll~~L~~~L~~~ 942 (1265)
...+...+.+++..+.. +. +.|..++-.+.....|++.++|.-|+..|+..+.-+.... ...++..++..|+
T Consensus 232 ~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~-- 309 (533)
T KOG2032|consen 232 NGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLY-- 309 (533)
T ss_pred cchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHh--
Confidence 34556666677776643 32 6777788888888999999999999999999997632211 1223333443333
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-CCC
Q 000827 943 LGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR-GAE 1009 (1265)
Q Consensus 943 L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~-~~~ 1009 (1265)
++.+.+|.-.++.+|..+.+......+.+|+-++--++..++++.+.++|.+++.++|.++.. |+.
T Consensus 310 -D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~ 376 (533)
T KOG2032|consen 310 -DDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGG 376 (533)
T ss_pred -cCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCC
Confidence 444578888888899888888878889999999999999999999999999999999999987 443
No 79
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0015 Score=77.91 Aligned_cols=239 Identities=14% Similarity=0.147 Sum_probs=150.0
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhch---h-
Q 000827 810 VGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQ---R- 885 (1265)
Q Consensus 810 l~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~---~- 885 (1265)
+..+.....|....||..+++.+..+-. |- ++...+.......+.+.+.++|.++++.+....+.+.. .
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSE--GF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcc--cc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 4446666778888999999998776543 21 22223333344455555566788999888888887721 1
Q ss_pred --hhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH-------------HHHHhh-------
Q 000827 886 --VKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGV-------------VLYEYL------- 943 (1265)
Q Consensus 886 --~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~-------------~L~~~L------- 943 (1265)
=.......+..+...++|-++.||-.|+.++|.+-.+-..-.++.+-+++.. .++...
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 1245566777888999999999999999999988764322111111112222 122111
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHH
Q 000827 944 -GEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFE 1022 (1265)
Q Consensus 944 -~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~ 1022 (1265)
+++.|.- . ..-+...+-| ..-...++..|.+.-..||++|+..++.||.+.+.|. .+.+.-
T Consensus 353 ~~advpse---e--------~d~~~~siI~--sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldf 414 (823)
T KOG2259|consen 353 WNADVPSE---E--------DDEEEESIIP--SGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDF 414 (823)
T ss_pred ccccCchh---h--------cccccccccc--ccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHH
Confidence 1111100 0 0000000000 0011123444555567899999999999999888773 355666
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHhhCc-HHHHHHHHHhhcccchhhHHHH
Q 000827 1023 LLEMLKAHKKGIRRATVNTFGYIAKAIGP-QDVLATLLNNLKVQERQNRVCT 1073 (1265)
Q Consensus 1023 LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp-~~vlp~Ll~~L~~~e~~~R~~~ 1073 (1265)
|+++++++...+|.-|+.++..|+..+.- ++.++.++..|.+...++|.+.
T Consensus 415 LvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l 466 (823)
T KOG2259|consen 415 LVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREAL 466 (823)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHH
Confidence 78999999999999999999999988543 4688888888887777777653
No 80
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.26 Score=60.73 Aligned_cols=179 Identities=17% Similarity=0.215 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHhch--hhhchHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCC
Q 000827 869 NVMLNGFGAVVNSLGQ--RVKPYLPQ-ICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGE 945 (1265)
Q Consensus 869 ~~al~aL~~I~~~lg~--~~~p~Lp~-ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d 945 (1265)
.++..++|..+..+.. .|..++.+ ++|-+. .-.+...-+|...+|.+|+-+. .....++-+.+-..+...+.|
T Consensus 462 DAiYaa~g~~a~~l~~~~dF~~Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvs---vq~~~e~k~l~Y~a~lnLL~d 537 (978)
T KOG1993|consen 462 DAIYAAFGLAAYELSNILDFDKWLQEALLPELA-NDHGNSRIIRRRVAWILGQWVS---VQQKLELKPLLYCAFLNLLQD 537 (978)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhh---eechHhHHHHHHHHHHHhcCc
Confidence 4677777777766653 45555543 444443 1222345678888998886444 222233444444455556676
Q ss_pred C-CHHHHHHHHHHHHHHHHHh--CcccCCccHHhHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhCCCCcChH--HHHHH
Q 000827 946 E-YPEVLGSILGALKAIVNVI--GMTKMTPPIKDLLPRLTPILKNRH-EKVQENCIDLVGRIADRGAEFVPAR--EWMRI 1019 (1265)
Q Consensus 946 ~-~~~V~~~al~aL~~lv~~~--g~~~l~p~l~~Llp~Ll~~L~~~~-~~Vre~ai~~ig~Ia~~~~~~~~~~--e~~~i 1019 (1265)
. +.-|+-.+..+++.+++.. ..+.|.||++.+.-.+..+|+.-. -..|...+.+++.+....++.+.++ ++..+
T Consensus 538 ~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~ 617 (978)
T KOG1993|consen 538 QNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQY 617 (978)
T ss_pred cccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6 6778899999999999865 456788999888888888887633 4567888899999888756665443 22233
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcH
Q 000827 1020 CFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQ 1052 (1265)
Q Consensus 1020 l~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~ 1052 (1265)
++.|-+-- .+..-+|.+...++-.+..++|.+
T Consensus 618 lp~LWe~s-~~e~lLr~alL~~L~~lV~alg~q 649 (978)
T KOG1993|consen 618 LPLLWEES-EEEPLLRCALLATLRNLVNALGAQ 649 (978)
T ss_pred HHHHHhhh-ccCcHHHHHHHHHHHHHHHHhccC
Confidence 33332211 135567777888999999999864
No 81
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.27 Score=60.88 Aligned_cols=128 Identities=23% Similarity=0.191 Sum_probs=75.3
Q ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhh-cchhhhhhHHHH
Q 000827 456 KIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYK-LDELVRPYVHKI 534 (1265)
Q Consensus 456 ~i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~-l~~~v~p~~~~L 534 (1265)
.+.+.|++--++||.+|+.|-|.|.+.... ..+--.+|.++-+...+.+.|+.+.-.+.+-+.+ -.+
T Consensus 6 ~l~~~l~qTl~pdps~rk~aEr~L~~~e~q---~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~--------- 73 (960)
T KOG1992|consen 6 TLANYLLQTLSPDPSVRKPAERALRSLEGQ---QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIP--------- 73 (960)
T ss_pred HHHHHHHhcCCCCCccCchHHHHHHHhccC---CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCc---------
Confidence 456667777788899999999999775432 1334467777777777888888664444332221 110
Q ss_pred HHHHHhhccCCCH--HHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhh-hC--hhhHHHHHH
Q 000827 535 LVVIEPLLIDEDY--YARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASA-LG--IPALLPFLK 609 (1265)
Q Consensus 535 l~~i~~lL~ded~--~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~-lg--~~~Llp~L~ 609 (1265)
.++. ..-.+.++.|+.+.-.. | -+....+......++..+++. +. ||.|+|-|.
T Consensus 74 ---------~~~~~~~i~~~~~e~ikslIv~l--------M----l~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~ 132 (960)
T KOG1992|consen 74 ---------AEDSPIKIIEEDREQIKSLIVTL--------M----LSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLV 132 (960)
T ss_pred ---------CCCCccccchhHHHHHHHHHHHH--------H----hcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 0111 12233344444433111 1 112223455566777777766 33 999999999
Q ss_pred HHHcCCc
Q 000827 610 AVCQSKK 616 (1265)
Q Consensus 610 ~~l~s~~ 616 (1265)
+.+++.+
T Consensus 133 ~~ls~~D 139 (960)
T KOG1992|consen 133 ARLSSGD 139 (960)
T ss_pred hhccccc
Confidence 9988765
No 82
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.72 E-value=1.6e-05 Score=66.54 Aligned_cols=55 Identities=22% Similarity=0.209 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 000827 618 WQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAAL 672 (1265)
Q Consensus 618 ~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~l 672 (1265)
|..|+.++.+||.++...+..+.+|++.+++.+...++|++..||..|+++||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 7899999999998776666678899999999999999999999999999999875
No 83
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.71 E-value=2.6e-05 Score=65.25 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000827 867 DANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRI 919 (1265)
Q Consensus 867 d~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~L 919 (1265)
+|..++.+||.+++..+..++||++++++.|+.+|+|.+..||.+|+++||+|
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46788999999888899999999999999999999999999999999999975
No 84
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.023 Score=69.10 Aligned_cols=394 Identities=17% Similarity=0.206 Sum_probs=189.9
Q ss_pred HhccCCCHhHHHHHHHHHHHHHhhcCC-hhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcch--hhhhhHHHHHHHH
Q 000827 462 LKVKNGTPPQRKTALRQLTDKAREFGA-GPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDE--LVRPYVHKILVVI 538 (1265)
Q Consensus 462 l~lkn~~~~vR~~A~r~L~~~A~~~G~-~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~--~v~p~~~~Ll~~i 538 (1265)
.++..|+.+++..||+.+-.....--. ..++-.++.+.+-+ .+-+-+.++ -+.=+++.+... -+++-+--+...+
T Consensus 27 ~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps-~~~elKKLl-y~ywE~vPKt~~dgkl~~EMILvcna~ 104 (948)
T KOG1058|consen 27 EKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPS-RNHELKKLL-YYYWELVPKTDSDGKLLHEMILVCNAY 104 (948)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeecc-CchHHHHHH-HHHHHHccccCCCcccHHHHHHHHHHH
Confidence 356677777888888777544332111 12455566665543 122222222 122223333221 1222222333445
Q ss_pred HhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhC-----hhhHHHHHHHHHc
Q 000827 539 EPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALG-----IPALLPFLKAVCQ 613 (1265)
Q Consensus 539 ~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg-----~~~Llp~L~~~l~ 613 (1265)
.+=|..++.++|-.+..-++.|-+.-=++.+.+.++..++|...|||+.|.-|+..|.+.+. -|+|+-.....=+
T Consensus 105 RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~ 184 (948)
T KOG1058|consen 105 RKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQ 184 (948)
T ss_pred hhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhcc
Confidence 55566788899988888888777766678888999999999999999999888888776632 3444432221111
Q ss_pred CCchhHHHHHHHHHHH---------HHHH---HhCCCcchhH-------------------HHHHHHHHhhcCCCChhhH
Q 000827 614 SKKSWQARHTGIKIVQ---------QIAI---LIGCAVLPHL-------------------RSLVEIIEHGLNDENQKVR 662 (1265)
Q Consensus 614 s~~s~~~R~aal~~L~---------~i~~---~~g~~l~p~L-------------------~~ll~~l~~~L~De~~~VR 662 (1265)
+ +..++-|+..|. ++.. .++ .+.+.| ...+.+|..+|...++.|+
T Consensus 185 D---psCkRNAFi~L~~~D~ErAl~Yl~~~idqi~-~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~ 260 (948)
T KOG1058|consen 185 D---PSCKRNAFLMLFTTDPERALNYLLSNIDQIP-SFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVI 260 (948)
T ss_pred C---chhHHHHHHHHHhcCHHHHHHHHHhhHhhcc-CccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhh
Confidence 2 222222332222 1111 111 111111 1234444445555555566
Q ss_pred HHHHHHHHHHHHHhCccchh-hhHHhHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCC
Q 000827 663 TITALSLAALAEAAAPYGIE-SFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPD 741 (1265)
Q Consensus 663 ~~A~~aL~~lae~~~p~~~~-~~~~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~d 741 (1265)
..|+.+|-.++.. |...+ .-..++..+.+ ..|.+.+... +.-+..+-+.. ..-+++++--+++.+.++|
T Consensus 261 fEaa~tlv~lS~~--p~alk~Aa~~~i~l~~k-esdnnvklIv--ldrl~~l~~~~-----~~il~~l~mDvLrvLss~d 330 (948)
T KOG1058|consen 261 FEAAGTLVTLSND--PTALKAAASTYIDLLVK-ESDNNVKLIV--LDRLSELKALH-----EKILQGLIMDVLRVLSSPD 330 (948)
T ss_pred hhhcceEEEccCC--HHHHHHHHHHHHHHHHh-ccCcchhhhh--HHHHHHHhhhh-----HHHHHHHHHHHHHHcCccc
Confidence 5555444433211 11011 00111211111 1111111100 00000000000 0112333344567888999
Q ss_pred HHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHHHHHHHhhh--hhHHHHHHH-HHHHHHHHHhcCh--hhhHHHHHHH
Q 000827 742 EEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMA--LDRRNYKQL-VETTVEIANKVGV--ADIVGRIVED 816 (1265)
Q Consensus 742 e~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~--~d~~~~~~l-l~~~~~la~~~g~--~~il~~i~~~ 816 (1265)
-++|+.++...-.++.+..+ .+++..|-+.+...... .+...++++ ++++-..|-+... ..++..+++.
T Consensus 331 ldvr~Ktldi~ldLvssrNv------ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~f 404 (948)
T KOG1058|consen 331 LDVRSKTLDIALDLVSSRNV------EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDF 404 (948)
T ss_pred ccHHHHHHHHHHhhhhhccH------HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 99999998887777766431 23333333333211111 223345554 4665555544432 3467777788
Q ss_pred hcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhh-cccchHHHHHHHHHHHHHHhc
Q 000827 817 LKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQE-QTSDDANVMLNGFGAVVNSLG 883 (1265)
Q Consensus 817 l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e-~~~ed~~~al~aL~~I~~~lg 883 (1265)
+.|.++.-...++..+..++..++. +-..++..++..|.. .++.....++-.+|..|++.+
T Consensus 405 isD~N~~aas~vl~FvrE~iek~p~------Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 405 ISDSNEAAASDVLMFVREAIEKFPN------LRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred hccCCHHHHHHHHHHHHHHHHhCch------HHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 8888876666666556555555432 222344445544433 122222344555555555544
No 85
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.69 E-value=0.18 Score=63.86 Aligned_cols=367 Identities=13% Similarity=0.158 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhhh--HHhHHHHHHhhhc
Q 000827 620 ARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESF--DSVLKPLWKGIRS 697 (1265)
Q Consensus 620 ~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~~--~~iL~~L~~~l~~ 697 (1265)
.=+.+++.|..+++...-...=.-..+++.|.+.|..++..+...++..|..|+-.-.. ...+ ..+++.|.+.+..
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~EN--K~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKEN--KDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH--HHHHHHcCCHHHHHHHhcC
Confidence 33467777777776543211112245677777888778888888888888887643221 1111 2578888887776
Q ss_pred cchHHHHHHHHHHhhhhhhhhHhhhhhhH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHH
Q 000827 698 HRGKVLAAFLKAIGFIIPLMDALYASYYT-KEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFR 776 (1265)
Q Consensus 698 ~~~~~la~~l~a~~~lip~~~~~~~~~~~-~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~ 776 (1265)
.....+...++.+..+- .++....... ..+++.|+..+.++ ..+..++.++..+...+.....+.+...+|.+++
T Consensus 343 ~~~~l~~~aLrlL~NLS--fd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~ 418 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLS--FDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQ 418 (708)
T ss_pred CCHHHHHHHHHHHHHhC--cCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHH
Confidence 55433333333332210 1111100111 12556677777654 3556677888777654322222333455666555
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhcChh------hhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCC-chhHHH
Q 000827 777 NFWVRRMALDRRNYKQLVETTVEIANKVGVA------DIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASD-IDARLE 849 (1265)
Q Consensus 777 ~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~------~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~-~~~~~~ 849 (1265)
-+...... +.-..++..+..++...... ..+..+...... .+. ..+.+++.++...+ ......
T Consensus 419 ~Ll~~~~~---~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~----~~D---~lLlKlIRNiS~h~~~~k~~f 488 (708)
T PF05804_consen 419 MLLENSEE---EVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALK----TRD---PLLLKLIRNISQHDGPLKELF 488 (708)
T ss_pred HHHhCCCc---cccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHh----ccc---HHHHHHHHHHHhcCchHHHHH
Confidence 44221111 00011222222221111000 112222222111 111 23445555553332 111222
Q ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHh--chhhhchHH--HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHH
Q 000827 850 ELLIDGILYAFQEQTSDDANVMLNGFGAVVNSL--GQRVKPYLP--QICGTIKWRLNNK--SAKVRQQAADLISRIAVVM 923 (1265)
Q Consensus 850 ~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~l--g~~~~p~Lp--~ilp~Ll~~L~d~--~~~VR~~A~~~lg~La~~l 923 (1265)
...+..++..+.... +....+.++|.+++.. +.+...++. .++|.|...|... +..+...++-++|.++..-
T Consensus 489 ~~~i~~L~~~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~ 566 (708)
T PF05804_consen 489 VDFIGDLAKIVSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP 566 (708)
T ss_pred HHHHHHHHHHhhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH
Confidence 223333444443322 2357889999988854 334555664 3788888888654 4567888888888777421
Q ss_pred hhcc----hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcc-cCCccHHhHHHHHHHHhcCCCHHHHHHHHH
Q 000827 924 KQCH----EEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMT-KMTPPIKDLLPRLTPILKNRHEKVQENCID 998 (1265)
Q Consensus 924 ~~~~----~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~-~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~ 998 (1265)
. |. ...+...|+.+|... .++-+..-.++.++..++..=... .+. .-.++...|+..+.+.|..||..|-.
T Consensus 567 ~-~A~lL~~sgli~~Li~LL~~k--qeDdE~VlQil~~f~~ll~h~~tr~~ll-~~~~~~~ylidL~~d~N~~ir~~~d~ 642 (708)
T PF05804_consen 567 E-CAPLLAKSGLIPTLIELLNAK--QEDDEIVLQILYVFYQLLFHEETREVLL-KETEIPAYLIDLMHDKNAEIRKVCDN 642 (708)
T ss_pred H-HHHHHHhCChHHHHHHHHHhh--CchHHHHHHHHHHHHHHHcChHHHHHHH-hccchHHHHHHHhcCCCHHHHHHHHH
Confidence 1 11 122444455444332 345677777788888876431100 010 01457788999999999999999999
Q ss_pred HHHHHHhhCC
Q 000827 999 LVGRIADRGA 1008 (1265)
Q Consensus 999 ~ig~Ia~~~~ 1008 (1265)
++..|+....
T Consensus 643 ~Ldii~e~d~ 652 (708)
T PF05804_consen 643 ALDIIAEYDE 652 (708)
T ss_pred HHHHHHHhCH
Confidence 9999988743
No 86
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.017 Score=67.95 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh-c---hHHHHHhhccCCCCchHHH
Q 000827 509 RHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAA-G---LATMIAAMRPDIDNIDEYV 584 (1265)
Q Consensus 509 R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~-G---l~~~~~~L~~~l~~~d~~v 584 (1265)
...+|+.+..+++.-+. ...++.+.+..-|.|.-..|..+++..+..++... | +...++.|+..+.......
T Consensus 244 ~V~lvr~~~~ll~~n~q----~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~ 319 (898)
T COG5240 244 GVLLVRATVELLKENSQ----ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVL 319 (898)
T ss_pred heehHHHHHHHHHhChH----HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHH
Confidence 33455666665555443 34445555556667766778888888887776553 3 2344455555566665566
Q ss_pred HHHHHHHHHHHHhh
Q 000827 585 RNTTARAFSVVASA 598 (1265)
Q Consensus 585 R~~aa~~l~~lA~~ 598 (1265)
|-+|.|.+..+|..
T Consensus 320 rFsA~Riln~lam~ 333 (898)
T COG5240 320 RFSAMRILNQLAMK 333 (898)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666666666644
No 87
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.01 Score=72.90 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=67.0
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhhh
Q 000827 605 LPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESF 684 (1265)
Q Consensus 605 lp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~~ 684 (1265)
++++..-|.+++ |-.|..|+...+ |. .+......+...+..+++|.++.||..++.++..+-..-...+..
T Consensus 88 vnt~~kD~~d~n-p~iR~lAlrtm~--~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~-- 158 (734)
T KOG1061|consen 88 VNTFLKDCEDPN-PLIRALALRTMG--CL----RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED-- 158 (734)
T ss_pred hhhhhccCCCCC-HHHHHHHhhcee--eE----eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc--
Confidence 344444456665 888888777766 22 344566778888999999999999999999888775432222222
Q ss_pred HHhHHHHHHhhhccchHHHHHHHHHHhhh
Q 000827 685 DSVLKPLWKGIRSHRGKVLAAFLKAIGFI 713 (1265)
Q Consensus 685 ~~iL~~L~~~l~~~~~~~la~~l~a~~~l 713 (1265)
..+++.|...+.|...-+.++++.++..+
T Consensus 159 ~gl~~~L~~ll~D~~p~VVAnAlaaL~eI 187 (734)
T KOG1061|consen 159 SGLVDALKDLLSDSNPMVVANALAALSEI 187 (734)
T ss_pred cchhHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 25677777777777666666666665543
No 88
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.62 E-value=0.00012 Score=71.58 Aligned_cols=111 Identities=18% Similarity=0.158 Sum_probs=83.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCC
Q 000827 893 ICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMG-HLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMT 971 (1265)
Q Consensus 893 ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~-~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~ 971 (1265)
+++.++..+++.++.+|..++++++.++.....+. ..++. ..++.+.+.+.+.+++|+..++++|.+++..... ...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~-~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED-NKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH-HHH
Confidence 66777889999999999999999999986422211 22333 4566666667888999999999999999864321 111
Q ss_pred ccH-HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000827 972 PPI-KDLLPRLTPILKNRHEKVQENCIDLVGRIAD 1005 (1265)
Q Consensus 972 p~l-~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~ 1005 (1265)
... ..+++.|+..+++.+..+++.++.++..|+.
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 112 3589999999999999999999999998863
No 89
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.51 E-value=0.016 Score=67.96 Aligned_cols=243 Identities=23% Similarity=0.253 Sum_probs=154.7
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHH
Q 000827 938 VLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWM 1017 (1265)
Q Consensus 938 ~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~ 1017 (1265)
.+...+.+++..|+..+...++.+-. ...+|.+...|.+.++.||..++.++|.+-..
T Consensus 47 ~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~----------- 104 (335)
T COG1413 47 ELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGDP----------- 104 (335)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh-----------
Confidence 34455677788899888888666643 56788899999999999999999988766432
Q ss_pred HHHHHHHHHHh-hchHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhcccc------------hhhHHHHHHHHHHHHhhc
Q 000827 1018 RICFELLEMLK-AHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQE------------RQNRVCTTVAIAIVAETC 1084 (1265)
Q Consensus 1018 ~il~~LL~~Lk-~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~L~~~e------------~~~R~~~~~ai~~l~e~~ 1084 (1265)
..+..++..+. +++..+|..+..+||.+ |....+..|++.+.... .++|..+..+++.+..
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~----~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~-- 178 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKL----GDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD-- 178 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhc----CchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC--
Confidence 34555666667 68999999999999976 44555666777666544 2456666555554432
Q ss_pred CCcccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHHHHHHHHHHHhcccCCC
Q 000827 1085 SPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLG 1164 (1265)
Q Consensus 1085 gp~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~g~~ 1164 (1265)
-...+.|...+..+...|+..+..+++.+.... ..+.+.+...+.|.+..+|..++..++++ +
T Consensus 179 --~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~-------~ 241 (335)
T COG1413 179 --PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEI-------G 241 (335)
T ss_pred --hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhccc-------C
Confidence 233556666666666678888888877654221 45566777788999999999888776543 2
Q ss_pred chhHHHHHHHhhhhhcccCChHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcchhhHHHHHHHHHhhhh
Q 000827 1165 CEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSL 1233 (1265)
Q Consensus 1165 ~e~~~~~~ln~l~~~i~~~s~~v~~~~~~a~~~~~~~~g~~~~~~~~~~gl~~~a~~vr~~~~~~~~~~ 1233 (1265)
.+.+...+...+ .+....++.....+.. ..+......++..-+.|....+|..+-...+..
T Consensus 242 ~~~~~~~l~~~l----~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 302 (335)
T COG1413 242 DEEAVDALAKAL----EDEDVILALLAAAALG----ALDLAEAALPLLLLLIDEANAVRLEAALALGQI 302 (335)
T ss_pred cchhHHHHHHHH----hccchHHHHHHHHHhc----ccCchhhHHHHHHHhhcchhhHHHHHHHHHHhh
Confidence 333333333322 2233333222222222 222223344556666777777777777655544
No 90
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.50 E-value=0.00053 Score=63.26 Aligned_cols=86 Identities=26% Similarity=0.325 Sum_probs=67.3
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCc
Q 000827 894 CGTIKWRL-NNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTP 972 (1265)
Q Consensus 894 lp~Ll~~L-~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p 972 (1265)
+|.|+..| +|+++.||..|+++||++.. + ...+.|.+.+.|+++.|+..++.+|+.+-.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-------~----~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-------P----EAIPALIELLKDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-------H----HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-------H----hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 46677888 89999999999999994432 2 334555556689999999999999998842
Q ss_pred cHHhHHHHHHHHhcCCC-HHHHHHHHHHHH
Q 000827 973 PIKDLLPRLTPILKNRH-EKVQENCIDLVG 1001 (1265)
Q Consensus 973 ~l~~Llp~Ll~~L~~~~-~~Vre~ai~~ig 1001 (1265)
+..++.|..++++.+ ..||..|+.++|
T Consensus 61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 567888999888754 667999999886
No 91
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.033 Score=68.59 Aligned_cols=177 Identities=15% Similarity=0.071 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhch----hhh-chHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh
Q 000827 870 VMLNGFGAVVNSLGQ----RVK-PYLPQICGTIKWRLNNK-SAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYL 943 (1265)
Q Consensus 870 ~al~aL~~I~~~lg~----~~~-p~Lp~ilp~Ll~~L~d~-~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L 943 (1265)
..+.++..+|+.+.. .+. =.+..++|.|+.+|+++ ++.+...||.+|.-+++++.....--+=.+.+++|.+.|
T Consensus 184 ~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL 263 (1051)
T KOG0168|consen 184 QQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKL 263 (1051)
T ss_pred HHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhh
Confidence 455666666664431 111 13567889999999987 799999999999999998765321001112455555544
Q ss_pred C-CCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-CCCCcChHHHHHHHH
Q 000827 944 G-EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR-GAEFVPAREWMRICF 1021 (1265)
Q Consensus 944 ~-d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~-~~~~~~~~e~~~il~ 1021 (1265)
- =+|-+|.+.++.||..|...-+..-++ ...|+- .+.-|.--.-.+|+.|+.+...+|+. .++...+ +|+.++
T Consensus 264 ~~IeyiDvAEQ~LqALE~iSR~H~~AiL~--AG~l~a-~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~--v~ealP 338 (1051)
T KOG0168|consen 264 LTIEYIDVAEQSLQALEKISRRHPKAILQ--AGALSA-VLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHF--VMEALP 338 (1051)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhccHHHHh--cccHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchH--HHHHHH
Confidence 3 467889999999999998765433222 112222 22223333456899999999999998 3333333 467777
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhhCc
Q 000827 1022 ELLEMLKAHKKGIRRATVNTFGYIAKAIGP 1051 (1265)
Q Consensus 1022 ~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp 1051 (1265)
.|-..|..+.++.-..+..||..|+...-+
T Consensus 339 lL~~lLs~~D~k~ies~~ic~~ri~d~f~h 368 (1051)
T KOG0168|consen 339 LLTPLLSYQDKKPIESVCICLTRIADGFQH 368 (1051)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence 666677777777777888899999887643
No 92
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.46 E-value=0.65 Score=58.30 Aligned_cols=134 Identities=11% Similarity=0.241 Sum_probs=89.5
Q ss_pred HHHHHHHhhcCCc-----ccHHHHHhhcCCCc-hhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHH
Q 000827 1075 VAIAIVAETCSPF-----TVLPALMNEYRVPE-LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT 1148 (1265)
Q Consensus 1075 ~ai~~l~e~~gp~-----~vlPaL~~~~~~~~-~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~ 1148 (1265)
+++--+++.|... ..+|.|..++...+ ..++|.+.-+++.++-..-.+ +..-+|.|-..|.|.++.+|+.
T Consensus 950 ~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam----~d~YiP~I~~~L~Dp~~iVRrq 1025 (1529)
T KOG0413|consen 950 VGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAM----TDRYIPMIAASLCDPSVIVRRQ 1025 (1529)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHH----HHHhhHHHHHHhcCchHHHHHH
Confidence 3333456667542 36899999876553 346777666665544322222 3445677778899999999888
Q ss_pred HHHHHHHH-HhcccCCCchhHHHHHHHhhhhhcccCChHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcc
Q 000827 1149 AASAVKHM-ALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFH 1217 (1265)
Q Consensus 1149 A~~~l~~l-al~~~g~~~e~~~~~~ln~l~~~i~~~s~~v~~~~~~a~~~~~~~~g~~~~~~~~~~gl~~ 1217 (1265)
+.-++.++ ..|...-.. ..|+.++ -.+.+.+++++.-.--++..+...-.|.++++.+.+++||
T Consensus 1026 t~ilL~rLLq~~~vKw~G-~Lf~Rf~----l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~ 1090 (1529)
T KOG0413|consen 1026 TIILLARLLQFGIVKWNG-ELFIRFM----LALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIA 1090 (1529)
T ss_pred HHHHHHHHHhhhhhhcch-hhHHHHH----HHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHH
Confidence 87777664 333332111 3444443 3456889999999988999998888888888888888865
No 93
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.58 Score=57.07 Aligned_cols=242 Identities=14% Similarity=0.205 Sum_probs=142.1
Q ss_pred CCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHH--------------HHHHhhhcccch-H---HHHHHHHHHHHH
Q 000827 819 DESEPYRRMVMETIEKVVANLGASDIDARLEELLIDG--------------ILYAFQEQTSDD-A---NVMLNGFGAVVN 880 (1265)
Q Consensus 819 d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~--------------ll~~l~e~~~ed-~---~~al~aL~~I~~ 880 (1265)
+...-+|+.++-++.++....++.........+++.. ++.++....++. + .-++.-|..++.
T Consensus 159 ~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~ 238 (938)
T KOG1077|consen 159 SSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVV 238 (938)
T ss_pred cchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHh
Confidence 4456789999988888887755432111111121110 111221111222 1 234555666666
Q ss_pred Hhchhh---------hchHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchH---HHHHHHHHHHHHh-----
Q 000827 881 SLGQRV---------KPYLPQ-ICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEE---QLMGHLGVVLYEY----- 942 (1265)
Q Consensus 881 ~lg~~~---------~p~Lp~-ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~---~ll~~L~~~L~~~----- 942 (1265)
..|..+ .|+|.. ++..|..+=.-.++.+|.....++.+|-...++|... +.-+.--.+|++.
T Consensus 239 ~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~ 318 (938)
T KOG1077|consen 239 VVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAI 318 (938)
T ss_pred hcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHH
Confidence 666543 344443 3322222212236778888888888877655533210 0011111122222
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHH
Q 000827 943 LGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFE 1022 (1265)
Q Consensus 943 L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~ 1022 (1265)
.-|+.++....+|..|+.++. ++...+|--+++.+..++.++...-. +-.....
T Consensus 319 h~D~e~~ll~~~~~~Lg~fls-----------------------~rE~NiRYLaLEsm~~L~ss~~s~da---vK~h~d~ 372 (938)
T KOG1077|consen 319 HLDSEPELLSRAVNQLGQFLS-----------------------HRETNIRYLALESMCKLASSEFSIDA---VKKHQDT 372 (938)
T ss_pred HcCCcHHHHHHHHHHHHHHhh-----------------------cccccchhhhHHHHHHHHhccchHHH---HHHHHHH
Confidence 236667777777766666653 55566888889999998887332211 1123445
Q ss_pred HHHHHh-hchHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCC
Q 000827 1023 LLEMLK-AHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP 1086 (1265)
Q Consensus 1023 LL~~Lk-~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp 1086 (1265)
++..|+ ..+.++|+.|++-+-.++..-....+...|++.|..-|.+.|.-...-+++++|...+
T Consensus 373 Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 373 IINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 566777 4478999999998887765444456888899999999999999988899999997765
No 94
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.18 Score=61.72 Aligned_cols=93 Identities=19% Similarity=0.275 Sum_probs=65.1
Q ss_pred HhhccCCCCchHHHHHHHHHHHHHHHhhhChhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 000827 571 AAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEII 650 (1265)
Q Consensus 571 ~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l 650 (1265)
..+|.++.||.+|+|-.+-|-+..+=..==+..++|.+.+++.... ...|+-|+.+++.|-.. +..+.|-.+.++.-+
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrh-sYVRrNAilaifsIyk~-~~~L~pDapeLi~~f 179 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRH-SYVRRNAILAIFSIYKN-FEHLIPDAPELIESF 179 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcc-hhhhhhhheeehhHHhh-hhhhcCChHHHHHHH
Confidence 6789999999999998877776655322115688899999998876 57888888888866554 345667777777655
Q ss_pred HhhcCCCChhhHHHHHH
Q 000827 651 EHGLNDENQKVRTITAL 667 (1265)
Q Consensus 651 ~~~L~De~~~VR~~A~~ 667 (1265)
.. .+.++.-++.|..
T Consensus 180 L~--~e~DpsCkRNAFi 194 (948)
T KOG1058|consen 180 LL--TEQDPSCKRNAFL 194 (948)
T ss_pred HH--hccCchhHHHHHH
Confidence 43 3444555555433
No 95
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.92 Score=57.71 Aligned_cols=366 Identities=14% Similarity=0.219 Sum_probs=193.4
Q ss_pred CcchhHHHHHHHHHh-hc--C---------CCChhhHH-------------HHHHHHHHHHHHhCccchhhhHHhHHHHH
Q 000827 638 AVLPHLRSLVEIIEH-GL--N---------DENQKVRT-------------ITALSLAALAEAAAPYGIESFDSVLKPLW 692 (1265)
Q Consensus 638 ~l~p~L~~ll~~l~~-~L--~---------De~~~VR~-------------~A~~aL~~lae~~~p~~~~~~~~iL~~L~ 692 (1265)
.+.||+..++.-+.. .+ + |++..+|. +|...+-.+ +...+-+.|..++.-+.
T Consensus 340 ll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~---~~KR~ke~l~k~l~F~~ 416 (1010)
T KOG1991|consen 340 LLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTL---VSKRGKETLPKILSFIV 416 (1010)
T ss_pred HhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHH---HHhcchhhhhhHHHHHH
Confidence 467999887665543 22 2 34445653 333333333 33334455556655555
Q ss_pred Hhhhc------cc--hHHHHHHHHHHhhhhhhhhHh--hhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCc
Q 000827 693 KGIRS------HR--GKVLAAFLKAIGFIIPLMDAL--YASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVE 762 (1265)
Q Consensus 693 ~~l~~------~~--~~~la~~l~a~~~lip~~~~~--~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~ 762 (1265)
.-+.. .+ .+.-..++..++.+...+... |.+..-.-++..+...|+++---+|..++.++..+++..
T Consensus 417 ~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~d--- 493 (1010)
T KOG1991|consen 417 DILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSID--- 493 (1010)
T ss_pred HHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhcc---
Confidence 44431 11 112223344455444333221 111111124445556677777778888888887776432
Q ss_pred chhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHHHHHhc-CCChhHHHHHHHHHHHHHHhhCC
Q 000827 763 ADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLK-DESEPYRRMVMETIEKVVANLGA 841 (1265)
Q Consensus 763 ~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i~~~l~-d~~~~vR~~a~~~l~~ii~~lg~ 841 (1265)
+-. ......+ +......+. |..-+||-.++-++..++.+...
T Consensus 494 --f~d-------------------~~~l~~a----------------le~t~~~l~~d~~lPV~VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 494 --FKD-------------------PNNLSEA----------------LELTHNCLLNDNELPVRVEAALALQSFISNQEQ 536 (1010)
T ss_pred --CCC-------------------hHHHHHH----------------HHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence 100 0011111 222233444 66778888888888887776654
Q ss_pred CCc-hhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHH----HHHHHhcC---CCHHHHHHHH
Q 000827 842 SDI-DARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICG----TIKWRLNN---KSAKVRQQAA 913 (1265)
Q Consensus 842 ~~~-~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp----~Ll~~L~d---~~~~VR~~A~ 913 (1265)
.+. -..+.++++..++....+..+++ .-+.+..|+...+..+.||-.+++. +.+.++++ .++.+-..++
T Consensus 537 ~~e~~~~hvp~~mq~lL~L~ne~End~---Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~i 613 (1010)
T KOG1991|consen 537 ADEKVSAHVPPIMQELLKLSNEVENDD---LTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAI 613 (1010)
T ss_pred hhhhHhhhhhHHHHHHHHHHHhcchhH---HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHH
Confidence 432 12344555555555554444444 4455677788888888888776554 44566764 4444555555
Q ss_pred HHHHHHH---HHHhh-cchHHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHh
Q 000827 914 DLISRIA---VVMKQ-CHEEQLMGHLGVVLYEY----LGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPIL 985 (1265)
Q Consensus 914 ~~lg~La---~~l~~-~~~~~ll~~L~~~L~~~----L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L 985 (1265)
-++|-|- ..+-. ..+..++..+-++++.. |...-.++-+-++.-+..+.-. ...++|.+=++++.+.+.+
T Consensus 614 aA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~--~~~Isp~mW~ll~li~e~~ 691 (1010)
T KOG1991|consen 614 AASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFL--SKEISPIMWGLLELILEVF 691 (1010)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh--hcccCHHHHHHHHHHHHHH
Confidence 4544433 22211 22344666655554432 2222233333333322222211 2347788889999999998
Q ss_pred cCCCHHHHHHHHHHHHHHHhhCC-CCcChHHHHHHHHHHH-HHHhhc--hHHHHHHHHHHHHHHHHhhCc
Q 000827 986 KNRHEKVQENCIDLVGRIADRGA-EFVPAREWMRICFELL-EMLKAH--KKGIRRATVNTFGYIAKAIGP 1051 (1265)
Q Consensus 986 ~~~~~~Vre~ai~~ig~Ia~~~~-~~~~~~e~~~il~~LL-~~Lk~~--~~~iR~~a~~tlg~Ia~~iGp 1051 (1265)
++..-..-....-++..+...|. .+...-.+..+|..+. ..+.+. ...-+..|.+-+..|.-.|+.
T Consensus 692 ~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg 761 (1010)
T KOG1991|consen 692 QDDGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG 761 (1010)
T ss_pred hhhhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC
Confidence 88765566666777776666533 3333322345555444 334442 445556678888888888865
No 96
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.78 Score=56.41 Aligned_cols=268 Identities=19% Similarity=0.136 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHh
Q 000827 950 VLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLK 1028 (1265)
Q Consensus 950 V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~-~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk 1028 (1265)
--+.++.||+-|-...|. .++..|+..|++. ++.||--++--||..+-..... .+...+-..|.
T Consensus 395 ~EGGalyAlGLIhA~hG~--------~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy 459 (929)
T KOG2062|consen 395 KEGGALYALGLIHANHGR--------GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLY 459 (929)
T ss_pred cccchhhhhhccccCcCc--------cHHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHh
Confidence 346788888887665554 3666677777764 4778888777777655443322 33333333344
Q ss_pred hchHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhh-cccchhhHHHHHHHHHHHHhhcCCcccHHHHHhh-cCCCchhHH-
Q 000827 1029 AHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNL-KVQERQNRVCTTVAIAIVAETCSPFTVLPALMNE-YRVPELNVQ- 1105 (1265)
Q Consensus 1029 ~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~L-~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~-~~~~~~~vq- 1105 (1265)
....-.=.+|.-++|.+.-.-+.+.++.-++..- ..|...+..+.+++|+.+. .|...-...++++ .++.+.-.|
T Consensus 460 ~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~--ygrqe~Ad~lI~el~~dkdpilR~ 537 (929)
T KOG2062|consen 460 NDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVV--YGRQEDADPLIKELLRDKDPILRY 537 (929)
T ss_pred ccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHH--hhhhhhhHHHHHHHhcCCchhhhh
Confidence 4433333456667787765555556665554432 1233334444444444432 2221111223333 222222233
Q ss_pred HHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhcccCCh
Q 000827 1106 NGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSP 1185 (1265)
Q Consensus 1106 ~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~~~s~ 1185 (1265)
.|++. ....|.|---...+..+++ -+.+|.+.+||+.|..+++-+. ....+..+.++..+-. +-.+
T Consensus 538 ~Gm~t---~alAy~GTgnnkair~lLh---~aVsD~nDDVrRaAVialGFVl-----~~dp~~~~s~V~lLse---s~N~ 603 (929)
T KOG2062|consen 538 GGMYT---LALAYVGTGNNKAIRRLLH---VAVSDVNDDVRRAAVIALGFVL-----FRDPEQLPSTVSLLSE---SYNP 603 (929)
T ss_pred hhHHH---HHHHHhccCchhhHHHhhc---ccccccchHHHHHHHHHheeeE-----ecChhhchHHHHHHhh---hcCh
Confidence 34432 2234445433334455444 3688999999999976654332 2112333333333322 2679
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcchhhHHHHHHHHHhhhhhccccCcceeccCCC
Q 000827 1186 HVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPTL 1248 (1265)
Q Consensus 1186 ~v~~~~~~a~~~~~~~~g~~~~~~~~~~gl~~~a~~vr~~~~~~~~~~~~~~~~~~~~~~p~~ 1248 (1265)
|||-.+.=+++-+....|...-++.+=.-.-+|-.=||+...--...+-+++-|++.|-+-.|
T Consensus 604 HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~f 666 (929)
T KOG2062|consen 604 HVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGF 666 (929)
T ss_pred hhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHH
Confidence 999999888887777777666677777777799999999988888899999999999976443
No 97
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.30 E-value=0.011 Score=68.60 Aligned_cols=190 Identities=19% Similarity=0.264 Sum_probs=121.4
Q ss_pred HHHHHHHHhccCC-CHhHHHHHHHHHHHHHh--hcCC-hhhHHHHhHHhcCC---CCCHHHHHHHHHHHHHHHhhcchhh
Q 000827 455 RKIMKLLLKVKNG-TPPQRKTALRQLTDKAR--EFGA-GPLFNRILPLLMQP---TLEDQERHLLVKVIDRVLYKLDELV 527 (1265)
Q Consensus 455 ~~i~~lll~lkn~-~~~vR~~A~r~L~~~A~--~~G~-~~~~~~iLp~l~~~---~led~~R~~~v~vi~~l~~~l~~~v 527 (1265)
..|..++..+.+. -...|+.|+..|-..-. .||. +..|.+||-.+.+- ..++-.|..++++|..++..-+..+
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 4667777777666 34578888887755443 3344 24566666655442 1234468889999999987766655
Q ss_pred hhhHHHHHHHHHhhccCCCH-HHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhC------
Q 000827 528 RPYVHKILVVIEPLLIDEDY-YARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALG------ 600 (1265)
Q Consensus 528 ~p~~~~Ll~~i~~lL~ded~-~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg------ 600 (1265)
..++.-.+.-+...-.|.+. .+|+.+-.|+..++...++..+ ..+.+.+-..|+-.--.+...+..+...+.
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I-~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ 444 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCI-VNISPLILTADEPRAVAVIKMLTKLFERLSAEELLN 444 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHH-HHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHH
Confidence 55554433333344445544 5666666666666666665443 333444433333333333345555555433
Q ss_pred -hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhC-CCcchhHHHH
Q 000827 601 -IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIG-CAVLPHLRSL 646 (1265)
Q Consensus 601 -~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g-~~l~p~L~~l 646 (1265)
+++++|.+.+.+.|.. -..|.++++||-.|...+| ..|.|||.+|
T Consensus 445 ll~diaP~~iqay~S~S-S~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 445 LLPDIAPCVIQAYDSTS-STVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred hhhhhhhHHHHHhcCch-HHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 7888998888888876 5799999999999999999 7899998765
No 98
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.27 E-value=1.3 Score=57.62 Aligned_cols=115 Identities=18% Similarity=0.319 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHHHHhhhC---hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCC
Q 000827 581 DEYVRNTTARAFSVVASALG---IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDE 657 (1265)
Q Consensus 581 d~~vR~~aa~~l~~lA~~lg---~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De 657 (1265)
..-||.+.|++++.+..++. +.+.+.++.+++..+. |..||+++..+-+....-...+...++.+++.+..++.|.
T Consensus 142 vapVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~-w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds 220 (1549)
T KOG0392|consen 142 VAPVREACAQALGAYLKHMDESLIKETLDILLQMLRQPN-WEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDS 220 (1549)
T ss_pred hhhhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcc-hhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 34589999999999998864 6788888999888876 9999999888876444322344567788999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhh
Q 000827 658 NQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIR 696 (1265)
Q Consensus 658 ~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~ 696 (1265)
+..||..|+..+...+........+.+..++..+|..++
T Consensus 221 ~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~ 259 (1549)
T KOG0392|consen 221 DDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLL 259 (1549)
T ss_pred chHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHH
Confidence 999999999998888776633334445566666666555
No 99
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.73 Score=54.40 Aligned_cols=292 Identities=18% Similarity=0.135 Sum_probs=158.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCCc-c--hhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHh
Q 000827 618 WQARHTGIKIVQQIAILIGCAV-L--PHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKG 694 (1265)
Q Consensus 618 ~~~R~aal~~L~~i~~~~g~~l-~--p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~ 694 (1265)
|..|.+.+- .+++.++..+ . +.+.+++..+..-..|++.++|..|+.+|+..++.++.....+...++..+..+
T Consensus 231 ~~~ritd~A---f~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~g 307 (533)
T KOG2032|consen 231 ENGRITDIA---FFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRG 307 (533)
T ss_pred ccchHHHHH---HHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHH
Confidence 777766543 3456666633 3 578889999999999999999999999999999996554455556788888888
Q ss_pred hhccch-HHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcchhhhhcchHH
Q 000827 695 IRSHRG-KVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPE 773 (1265)
Q Consensus 695 l~~~~~-~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~ 773 (1265)
+-|... .+.-..++++..+.+.....-...|.-.+...+...+.+.++++|-.++-.++.+....|-.-+.
T Consensus 308 L~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~-------- 379 (533)
T KOG2032|consen 308 LYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEE-------- 379 (533)
T ss_pred HhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchh--------
Confidence 776543 23333344444444443332233344445556667778888888887766666554332210000
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 000827 774 FFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLI 853 (1265)
Q Consensus 774 l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll 853 (1265)
+| ..++. +. +..+...+.|..+.+-.. |.......+.- ...
T Consensus 380 ~F--------------te~v~--------k~-----~~~lllhl~d~~p~va~A----Cr~~~~~c~p~--------l~r 420 (533)
T KOG2032|consen 380 FF--------------TEQVK--------KR-----LAPLLLHLQDPNPYVARA----CRSELRTCYPN--------LVR 420 (533)
T ss_pred hh--------------HHHHH--------hc-----cccceeeeCCCChHHHHH----HHHHHHhcCch--------hHH
Confidence 00 00000 00 011233445655543332 22222222110 001
Q ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHH----HhcCCCHHHHHHHHHHHHHHHHHHhhcch-
Q 000827 854 DGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKW----RLNNKSAKVRQQAADLISRIAVVMKQCHE- 928 (1265)
Q Consensus 854 ~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~----~L~d~~~~VR~~A~~~lg~La~~l~~~~~- 928 (1265)
+.+-..|++.. +.... .++.+-+..-.+++++.|.++-.+.. .++-.-+.||.++...-+++...+....-
T Consensus 421 ke~~~~~q~~l-d~~~~---~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~ 496 (533)
T KOG2032|consen 421 KELYHLFQESL-DTDMA---RFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACS 496 (533)
T ss_pred HHHHHHHhhhh-HHhHH---HHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 11111222111 11111 22222222223456667776644432 23333458898888887777765543211
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 000827 929 EQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVN 963 (1265)
Q Consensus 929 ~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~ 963 (1265)
..-...|...+...+.|+.|+|+.++..|+..++.
T Consensus 497 ~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 497 SADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 11233455556666789999999999999987753
No 100
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.23 E-value=0.00095 Score=65.06 Aligned_cols=109 Identities=8% Similarity=0.050 Sum_probs=76.0
Q ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHH
Q 000827 853 IDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLP-QICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQL 931 (1265)
Q Consensus 853 l~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp-~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~l 931 (1265)
++.++..+.+...+.+..++.+|+.++.........++. .+++.++.+|+|++++||..|+++++.|+..-.... ..+
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~ 87 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNK-LIV 87 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHH-HHH
Confidence 333444444433444667888888777654333334444 688899999999999999999999999986432211 122
Q ss_pred H-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 000827 932 M-GHLGVVLYEYLGEEYPEVLGSILGALKAIV 962 (1265)
Q Consensus 932 l-~~L~~~L~~~L~d~~~~V~~~al~aL~~lv 962 (1265)
. ..+++.+...+++.+.+++..++++|..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2 225667777778888999999999999886
No 101
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.22 E-value=0.015 Score=67.52 Aligned_cols=147 Identities=16% Similarity=0.243 Sum_probs=106.3
Q ss_pred hhhhhHHHHHHHHHhhccC-CCHHHHHHHHHHHHHHHHHhc--h----H-HHHHhhccCCCCchHHHHHHHHHHHHHHHh
Q 000827 526 LVRPYVHKILVVIEPLLID-EDYYARVEGREIISNLSKAAG--L----A-TMIAAMRPDIDNIDEYVRNTTARAFSVVAS 597 (1265)
Q Consensus 526 ~v~p~~~~Ll~~i~~lL~d-ed~~VR~~a~~il~~La~~~G--l----~-~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~ 597 (1265)
+-.+|..+||..+...|.| ++...+..|..+|..+.++-. + + .+..+|...-+..+..+|.++--|+-.+++
T Consensus 322 vWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las 401 (516)
T KOG2956|consen 322 VWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS 401 (516)
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh
Confidence 3468899999999999999 888889999999988776531 1 1 122445445556666777766677788888
Q ss_pred hhCh---hhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 000827 598 ALGI---PALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGC-AVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALA 673 (1265)
Q Consensus 598 ~lg~---~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~-~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~la 673 (1265)
+++. ..+-|.+.. .+ ...--++++.+..+++.+.. .+...++.+.|++.++....+..||..|+.||-.+.
T Consensus 402 ~~P~~~I~~i~~~Ilt----~D-~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 402 HLPLQCIVNISPLILT----AD-EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hCchhHHHHHhhHHhc----Cc-chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 8873 344444433 22 12223556677777776553 566788999999999999999999999999999998
Q ss_pred HHhC
Q 000827 674 EAAA 677 (1265)
Q Consensus 674 e~~~ 677 (1265)
..++
T Consensus 477 ~~vG 480 (516)
T KOG2956|consen 477 NRVG 480 (516)
T ss_pred HHHh
Confidence 8875
No 102
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.22 E-value=0.032 Score=64.37 Aligned_cols=184 Identities=19% Similarity=0.200 Sum_probs=106.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhC-cccCCccHHh
Q 000827 899 WRLNNKSAKVRQQAADLISRIAVVM-KQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG-MTKMTPPIKD 976 (1265)
Q Consensus 899 ~~L~d~~~~VR~~A~~~lg~La~~l-~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g-~~~l~p~l~~ 976 (1265)
..+.++....|+++...+-++...- ...+-......|...+...++-...+-+.-++.++.-++-.+| ...-...+..
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~ 129 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE 129 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Confidence 6677888999999888777665321 1111011223344455555544444555667788888887776 2233456678
Q ss_pred HHHHHHHHhcCCC--HHHHHHHHHHHHHHHhhCC-CCcChHHHHHHHHHHHH--HHhhc----------hHHHHHHHHHH
Q 000827 977 LLPRLTPILKNRH--EKVQENCIDLVGRIADRGA-EFVPAREWMRICFELLE--MLKAH----------KKGIRRATVNT 1041 (1265)
Q Consensus 977 Llp~Ll~~L~~~~--~~Vre~ai~~ig~Ia~~~~-~~~~~~e~~~il~~LL~--~Lk~~----------~~~iR~~a~~t 1041 (1265)
+.|.|.+++++.. .++|.+|+.++|.++-.++ +.-...+.|..+..+.. .++.. ...+..+|+.+
T Consensus 130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 8888999888765 4678899999999887733 32222223344442221 12211 24678888888
Q ss_pred HHHHHHhhCcHH-------HHHHHHHhhcccchhhHHHHHHHHHHHHh
Q 000827 1042 FGYIAKAIGPQD-------VLATLLNNLKVQERQNRVCTTVAIAIVAE 1082 (1265)
Q Consensus 1042 lg~Ia~~iGp~~-------vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e 1082 (1265)
.+.++-.+.+.. .+|.|...|...+..+|..+..+|++++|
T Consensus 210 W~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 210 WALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 888876665532 33444444444444444444444444444
No 103
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.21 E-value=0.0027 Score=65.68 Aligned_cols=137 Identities=22% Similarity=0.344 Sum_probs=89.1
Q ss_pred cChHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCC---
Q 000827 1011 VPAREWMRICFELLEMLKAH-KKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--- 1086 (1265)
Q Consensus 1011 ~~~~e~~~il~~LL~~Lk~~-~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp--- 1086 (1265)
.||.+++.++..|++.|+.+ ...+|+.+++++|.|+ ++.|..... ..............+............++
T Consensus 3 ~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG-ALDP~~~k~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e 80 (160)
T PF11865_consen 3 DPYLDYPELLDILLNILKTEQSQSIRREALRVLGILG-ALDPYKHKS-IQKSLDSKSSENSNDESTDISLPMMGISPSSE 80 (160)
T ss_pred chHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-ccCcHHHhc-ccccCCccccccccccchhhHHhhccCCCchH
Confidence 36667888888888888877 6999999999999987 466654321 00001000000000001111111122211
Q ss_pred ----cccHHHHHhhcCCCchhH-HHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHHH
Q 000827 1087 ----FTVLPALMNEYRVPELNV-QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 1149 (1265)
Q Consensus 1087 ----~~vlPaL~~~~~~~~~~v-q~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A 1149 (1265)
-.++.+||..++++.+.. +..+++++.++|...|-.+..|+..++|.+...+...+...|..-
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~ 148 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFY 148 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHH
Confidence 246778999998887654 347999999999998988999999999999998877655555443
No 104
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.21 E-value=1.4 Score=57.03 Aligned_cols=162 Identities=14% Similarity=0.199 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 000827 929 EQLMGHLGVVLYEYLG----EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILK-NRHEKVQENCIDLVGRI 1003 (1265)
Q Consensus 929 ~~ll~~L~~~L~~~L~----d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~-~~~~~Vre~ai~~ig~I 1003 (1265)
..+|..+.|++.+... -.+|+++.+|.-||+.+.-.- ..|...=+|.|+.++. .++..+|.+++-++|.+
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS-----a~fces~l~llftimeksp~p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS-----AEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDL 988 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHhcCCCceeeecchheccch
Confidence 5688889998887652 335899999999999986432 1356777888888887 57799999999999999
Q ss_pred HhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh--hCcHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 000827 1004 ADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKA--IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVA 1081 (1265)
Q Consensus 1004 a~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~--iGp~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~ 1081 (1265)
|-+-+..+. ++-..|...|.++...+|..|+-++..+.-+ +.-.-.++.+.-.+-++++.+|.-+-...--+.
T Consensus 989 av~fpnlie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 989 AVRFPNLIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred hhhcccccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 998776654 3445567888999999999999998877532 111113344444455565554432211111111
Q ss_pred hhcCC-cccHHHHHhhcCCC
Q 000827 1082 ETCSP-FTVLPALMNEYRVP 1100 (1265)
Q Consensus 1082 e~~gp-~~vlPaL~~~~~~~ 1100 (1265)
.-.-+ |.+||.++.++..+
T Consensus 1064 ~k~n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1064 SKGNTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred hcccchhhhchHHHHhhccC
Confidence 11112 78899999888776
No 105
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.20 E-value=2.6 Score=59.89 Aligned_cols=504 Identities=15% Similarity=0.231 Sum_probs=238.7
Q ss_pred hhccCCCCchHHHHHHHHHHHHHHHhhhC------------hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCc
Q 000827 572 AMRPDIDNIDEYVRNTTARAFSVVASALG------------IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAV 639 (1265)
Q Consensus 572 ~L~~~l~~~d~~vR~~aa~~l~~lA~~lg------------~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l 639 (1265)
.+...+++.++.+|+.++..+..+..... +..++..+..+.....+...|.+-+..+. ..+
T Consensus 485 ~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~-------~~~ 557 (2341)
T KOG0891|consen 485 CVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN-------ERF 557 (2341)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc-------cch
Confidence 34445567778899888877776654421 22233333333222222333333322222 334
Q ss_pred chhH--HHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhcc---chHHHHHHHHHHhhhh
Q 000827 640 LPHL--RSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSH---RGKVLAAFLKAIGFII 714 (1265)
Q Consensus 640 ~p~L--~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~---~~~~la~~l~a~~~li 714 (1265)
.+++ +..+......+.|+.-.++.++...+|.+++..+.+...+|...+..+...+.-. +.+...+ +-+..++
T Consensus 558 ~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a--~~~~~~i 635 (2341)
T KOG0891|consen 558 DAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESA--KLLCELI 635 (2341)
T ss_pred hhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHH--HHhhHHH
Confidence 4544 3466667788889999999999999998887554444444443333333222211 1111111 1111111
Q ss_pred hhhhHhhhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcc-hhhhhcchHHHHHHHHHHhhhhhHHHHHHH
Q 000827 715 PLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEA-DYIRSDILPEFFRNFWVRRMALDRRNYKQL 793 (1265)
Q Consensus 715 p~~~~~~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~-~~l~~~ilp~l~~~~~~~~~~~d~~~~~~l 793 (1265)
-. .+.....|+..++..++..+++++..+.+.++.++.++|...|... .++ +..++.|.+.+........+. ..
T Consensus 636 ~~-~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~-~~~~~~~~~~l~~~s~~~rr~---as 710 (2341)
T KOG0891|consen 636 IS-SPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWV-DELFSLIIKMLQDQSSLGKRL---AA 710 (2341)
T ss_pred HH-HHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhcc-chHHHHHHHHHHHhhhhhchh---HH
Confidence 00 0011122333455667777778888888889999999987766221 222 245555555542211111010 11
Q ss_pred HHHHHHHHHhcCh--------hhhHHHHHHHhcCC-ChhHHHHHHHHHHHHH-------------------HhhCCCCch
Q 000827 794 VETTVEIANKVGV--------ADIVGRIVEDLKDE-SEPYRRMVMETIEKVV-------------------ANLGASDID 845 (1265)
Q Consensus 794 l~~~~~la~~~g~--------~~il~~i~~~l~d~-~~~vR~~a~~~l~~ii-------------------~~lg~~~~~ 845 (1265)
+.++..+....|. +.++..+...++.+ ...+|..++..+.... ...+..+.+
T Consensus 711 lk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~~~~~~~~~~~~~~~~~~~k~~~~ 790 (2341)
T KOG0891|consen 711 LKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPYKHKVTEGTSASKISSEQIKSDID 790 (2341)
T ss_pred HHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchhHHHHHhhhhhHhhhhccccccch
Confidence 2222333222221 22333332222211 2233333333222111 011111100
Q ss_pred hH-HHH-------HHHHHH-----HHHhhhcc-cchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHH
Q 000827 846 AR-LEE-------LLIDGI-----LYAFQEQT-SDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQ 911 (1265)
Q Consensus 846 ~~-~~~-------~ll~~l-----l~~l~e~~-~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~ 911 (1265)
.. ... ..++.. ...+.+.. +......+.+.-.+...+|..+..|+++++|.++.......+..+..
T Consensus 791 ~~~~~~~~~~~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f 870 (2341)
T KOG0891|consen 791 ISLLESGVNPSNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREF 870 (2341)
T ss_pred HHHHHhhhhhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchhHH
Confidence 00 000 000100 00111110 01123455666677777888888999999998877666555555544
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHH
Q 000827 912 AADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEK 991 (1265)
Q Consensus 912 A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~ 991 (1265)
....++.+.-.. .|....+++.+...+..... .+-.+...+...+..+...++. .|..|++..++..+..+...+..
T Consensus 871 ~~~q~~~~~~~~-~~h~~~~~~~i~~~i~~~~~-~~~~l~~~~~~l~~~i~~~l~~-~f~~~l~~~~~~~l~~~~~~~s~ 947 (2341)
T KOG0891|consen 871 YFQQLTSLVAIV-RQHIRPYMESIFTLIKDFWP-PDTSLQITIISLIEDIAVALGG-EFKKYLPELLPTMLTVLQHDKSK 947 (2341)
T ss_pred HHHhhhhhhhcc-chhHhhhhhhHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHh-HHHHhhhhhccchheeecccccc
Confidence 333222222111 12112233332222222111 2234444455555555555543 46677777777777666443444
Q ss_pred HHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHhhCcH----HHHHHHHHhhccc
Q 000827 992 VQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAH--KKGIRRATVNTFGYIAKAIGPQ----DVLATLLNNLKVQ 1065 (1265)
Q Consensus 992 Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~--~~~iR~~a~~tlg~Ia~~iGp~----~vlp~Ll~~L~~~ 1065 (1265)
.|.........+-..+....-+. .-+++.+++++.+. ...+|..+..+++.++..+.-. .+...++..+...
T Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~--hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~~~~~~~s~i~~~~~r~l~~s 1025 (2341)
T KOG0891|consen 948 DRVVSRKVLQSLQKFGSNLEQYL--HLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQVDLSEYASRIIHPLVRVLSSS 1025 (2341)
T ss_pred hHHHHHHhhHHHHhcCccHHhhH--hhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence 55555444444444333221111 23344566666666 5667778888888877665432 2333445555555
Q ss_pred chhhHHHHHHHHHHHHhhcCC-cccHHHHHh
Q 000827 1066 ERQNRVCTTVAIAIVAETCSP-FTVLPALMN 1095 (1265)
Q Consensus 1066 e~~~R~~~~~ai~~l~e~~gp-~~vlPaL~~ 1095 (1265)
..++......++.+.+..|. +.|++.+++
T Consensus 1026 -~el~~~~~~~l~~l~~~~~~~~~i~~p~~~ 1055 (2341)
T KOG0891|consen 1026 -PELRDVIMDTLIALVKQLGKDFAIFIPMVN 1055 (2341)
T ss_pred -hhHHHHHHHHHHHHHHhhcCceeehHHHHH
Confidence 55565555555556666665 666766666
No 106
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.20 E-value=0.024 Score=60.02 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHhhhC--hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCCh
Q 000827 582 EYVRNTTARAFSVVASALG--IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQ 659 (1265)
Q Consensus 582 ~~vR~~aa~~l~~lA~~lg--~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~ 659 (1265)
+.||+.+..+++-++...+ +...+|.+...+.+++ +..|++|+.++.++... ++...-++++..+...+.|+++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~-~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDED-PLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHcCCCH
Confidence 4577778888887776654 6778899999999986 88999999999987542 3444455666677778899999
Q ss_pred hhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhc
Q 000827 660 KVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRS 697 (1265)
Q Consensus 660 ~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~ 697 (1265)
.||..|..++..+.....+ ..+..+++.++..+..
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~---~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNP---NIIYNNFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHhC
Confidence 9999999999998877444 2334555555555543
No 107
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.14 E-value=0.0042 Score=76.95 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhch-hhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhh
Q 000827 847 RLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQ-RVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQ 925 (1265)
Q Consensus 847 ~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~-~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~ 925 (1265)
+....+++.++..|.......+...+.+|+.+...+.. .+.|.+|.++|.|+++|.=++..||-.+..+|.-+......
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 44445566666666544444567889999999988874 57899999999999999999999999999988877654332
Q ss_pred cchHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000827 926 CHEEQLMGHLGVVLYEYLGEEY---PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVG 1001 (1265)
Q Consensus 926 ~~~~~ll~~L~~~L~~~L~d~~---~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig 1001 (1265)
-. ...+..+++.++..-.+.+ ..||..++++|..+.+.+-...+.||-++++..|.+.|.|.+..||..|+++=+
T Consensus 943 L~-t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 943 LQ-TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred cc-hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 11 2345566666554333433 468999999999999988788899999999999999999999999999988754
No 108
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=97.11 E-value=0.0036 Score=76.02 Aligned_cols=238 Identities=16% Similarity=0.221 Sum_probs=155.0
Q ss_pred chHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCC
Q 000827 866 DDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGE 945 (1265)
Q Consensus 866 ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d 945 (1265)
+++......|...+..+.+.+ ....++|.|+..+.-.. ++...+.-+...-+....+.+-..+++.+.....-
T Consensus 269 ~eK~~Ff~~L~~~l~~~pe~i--~~~kvlp~Ll~~~~~g~-----a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~ 341 (690)
T KOG1243|consen 269 EEKQKFFSGLIDRLDNFPEEI--IASKVLPILLAALEFGD-----AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKS 341 (690)
T ss_pred HHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhhccc-----cchhhhhHHHHhhhhccccccccchhhhHHHHhcC
Confidence 334455555555555555443 22345555555544332 23333332222211111123445566666666677
Q ss_pred CCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-CCCCcChHHHHHHHHHHH
Q 000827 946 EYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR-GAEFVPAREWMRICFELL 1024 (1265)
Q Consensus 946 ~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~-~~~~~~~~e~~~il~~LL 1024 (1265)
.+..||...+.-+..++..+..+.+ -++|+|.+...+.+.+..+|+.++.+|..||.. +...++. |+++++..+.
T Consensus 342 ~Dr~iR~~LL~~i~~~i~~Lt~~~~---~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~-Ellr~~ar~q 417 (690)
T KOG1243|consen 342 PDRQIRLLLLQYIEKYIDHLTKQIL---NDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNG-ELLRYLARLQ 417 (690)
T ss_pred cchHHHHHHHHhHHHHhhhcCHHhh---cchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcH-HHHHHHHhhC
Confidence 7888999999999999998865543 378999999999999999999999999999988 4444443 2444443333
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhhCcHH---HH-HHHHHhhcccchhhHHHHHHHHHHHHhhcCC----cccHHHHHhh
Q 000827 1025 EMLKAHKKGIRRATVNTFGYIAKAIGPQD---VL-ATLLNNLKVQERQNRVCTTVAIAIVAETCSP----FTVLPALMNE 1096 (1265)
Q Consensus 1025 ~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~---vl-p~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp----~~vlPaL~~~ 1096 (1265)
.++...+|-.+..|+|.|+..+.+.. ++ .++...++++-..-|.....++....++.-- ..|+|.+.-.
T Consensus 418 ---~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl 494 (690)
T KOG1243|consen 418 ---PDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPL 494 (690)
T ss_pred ---ccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhcccccccc
Confidence 25677899999999999987765543 22 2334457777777888888887776665432 2577777777
Q ss_pred cCCCchhHHHHHHHHHHHHHH
Q 000827 1097 YRVPELNVQNGVLKSLSFLFE 1117 (1265)
Q Consensus 1097 ~~~~~~~vq~~vl~al~~l~~ 1117 (1265)
+.+++..|++...+++....+
T Consensus 495 ~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 495 TVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred ccCcccchhhHHHHHHHHHHh
Confidence 777887888877777665443
No 109
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.43 Score=59.07 Aligned_cols=283 Identities=13% Similarity=0.161 Sum_probs=135.4
Q ss_pred ChhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCcc
Q 000827 600 GIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPY 679 (1265)
Q Consensus 600 g~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~ 679 (1265)
+...+.+||..++.++..+..-++|. ++..+....+..+.| -+..+..++..+..-+|.+|...|..+|...+.
T Consensus 242 ~~s~~~~fl~s~l~~K~emV~~EaAr-ai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~- 315 (865)
T KOG1078|consen 242 ADSPLFPFLESCLRHKSEMVIYEAAR-AIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ- 315 (865)
T ss_pred chhhHHHHHHHHHhchhHHHHHHHHH-HHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc-
Confidence 35689999999998865443344433 333333223334445 556666777888999999999999999977542
Q ss_pred chhhhHHhHHHHHHhhhccchH-HHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhc
Q 000827 680 GIESFDSVLKPLWKGIRSHRGK-VLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVST 758 (1265)
Q Consensus 680 ~~~~~~~iL~~L~~~l~~~~~~-~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~ 758 (1265)
....-+.=|..|.......... +...+++.-. ..-...+|.-+.....+-+++.+..+.+++..+|..
T Consensus 316 ~v~~cN~elE~lItd~NrsIat~AITtLLKTG~-----------e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~ 384 (865)
T KOG1078|consen 316 AVTVCNLDLESLITDSNRSIATLAITTLLKTGT-----------ESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLK 384 (865)
T ss_pred cccccchhHHhhhcccccchhHHHHHHHHHhcc-----------hhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhh
Confidence 2211111122222211111100 1122222110 001112333333333344566677777777766643
Q ss_pred cCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCh--hhhHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 000827 759 EGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGV--ADIVGRIVEDLKDESEPYRRMVMETIEKVV 836 (1265)
Q Consensus 759 ~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~--~~il~~i~~~l~d~~~~vR~~a~~~l~~ii 836 (1265)
. +. ....+-.|+..++. ++..-+..+..+++++.+...... +..+..+...+.|- .+++-+ .+++
T Consensus 385 f---p~--k~~~~m~FL~~~Lr--~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc--e~~~i~----~rIL 451 (865)
T KOG1078|consen 385 F---PR--KHTVMMNFLSNMLR--EEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC--EFTQIA----VRIL 451 (865)
T ss_pred c---cH--HHHHHHHHHHHHHH--hccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc--cchHHH----HHHH
Confidence 2 21 12333344444422 122223333455665555442211 12233333333331 222222 2333
Q ss_pred HhhCCCCc----hhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHH
Q 000827 837 ANLGASDI----DARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQA 912 (1265)
Q Consensus 837 ~~lg~~~~----~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A 912 (1265)
..+|.+.. .++...- +.+..-=...-+|.+++.+|..+. .+. .-..+.|...+..|+.|++..||..|
T Consensus 452 hlLG~EgP~a~~Pskyir~----iyNRviLEn~ivRaaAv~alaKfg--~~~--~~l~~sI~vllkRc~~D~DdevRdrA 523 (865)
T KOG1078|consen 452 HLLGKEGPKAPNPSKYIRF----IYNRVILENAIVRAAAVSALAKFG--AQD--VVLLPSILVLLKRCLNDSDDEVRDRA 523 (865)
T ss_pred HHHhccCCCCCCcchhhHH----HhhhhhhhhhhhHHHHHHHHHHHh--cCC--CCccccHHHHHHHHhcCchHHHHHHH
Confidence 34444331 1111111 111110011234667777777665 221 12334566667789999999999999
Q ss_pred HHHHHHHH
Q 000827 913 ADLISRIA 920 (1265)
Q Consensus 913 ~~~lg~La 920 (1265)
.-.+..+-
T Consensus 524 tf~l~~l~ 531 (865)
T KOG1078|consen 524 TFYLKNLE 531 (865)
T ss_pred HHHHHHhh
Confidence 87776554
No 110
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=1.5 Score=54.63 Aligned_cols=241 Identities=16% Similarity=0.131 Sum_probs=126.5
Q ss_pred ccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-CCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhC
Q 000827 972 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG-AEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIG 1050 (1265)
Q Consensus 972 p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~-~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iG 1050 (1265)
+....+.+.+-..|++.++.|..-+..++-.+.... .++.|.. ..+..+ ++.++..+|.+|+.+|..+|.+.-
T Consensus 241 ~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~pav---s~Lq~f---lssp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 241 QADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAPAV---SVLQLF---LSSPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred cchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcchHH---HHHHHH---hcCcHHHHHHHHHHHHHHHHHhCC
Confidence 345567777888888888888887788887777663 3333322 333333 477788999999999999997642
Q ss_pred cH--HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcc------cHHHHHhh--------------------------
Q 000827 1051 PQ--DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFT------VLPALMNE-------------------------- 1096 (1265)
Q Consensus 1051 p~--~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~------vlPaL~~~-------------------------- 1096 (1265)
.. ..-.-|-+...+ ..|.++..||.-+-++..... -++.++.+
T Consensus 315 ~~v~~cN~elE~lItd---~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~ 391 (865)
T KOG1078|consen 315 QAVTVCNLDLESLITD---SNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTV 391 (865)
T ss_pred ccccccchhHHhhhcc---cccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHH
Confidence 21 011111111112 235566666655544432210 01111111
Q ss_pred --------cCC-CchhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHHHHHHHHHHHhcccCCC-ch
Q 000827 1097 --------YRV-PELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLG-CE 1166 (1265)
Q Consensus 1097 --------~~~-~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~g~~-~e 1166 (1265)
++. .....+..+.+++..+++...+.-..-+..+...++++ .+++.+..+++.+-..++... ..
T Consensus 392 ~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc------e~~~i~~rILhlLG~EgP~a~~Ps 465 (865)
T KOG1078|consen 392 MMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC------EFTQIAVRILHLLGKEGPKAPNPS 465 (865)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc------cchHHHHHHHHHHhccCCCCCCcc
Confidence 111 01122233444444444433222221222223333322 345566666554433333221 22
Q ss_pred hHHHHHHHhhhhhcccCChHHHHHHHHHHHHHHHHh--CHHHHHHHHHHhhcchhhHHHHHHHHHhh
Q 000827 1167 DALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVAL--GAAVVLNYCLQGLFHPARKVREVYWKIYN 1231 (1265)
Q Consensus 1167 ~~~~~~ln~l~~~i~~~s~~v~~~~~~a~~~~~~~~--g~~~~~~~~~~gl~~~a~~vr~~~~~~~~ 1231 (1265)
....|+.|.+. =.+.+||.+.+.|+..+-... -...+...+..|+++.-..||+..--.++
T Consensus 466 kyir~iyNRvi----LEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~ 528 (865)
T KOG1078|consen 466 KYIRFIYNRVI----LENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLK 528 (865)
T ss_pred hhhHHHhhhhh----hhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 34445555441 135689999999888776211 12357888889999999999987544333
No 111
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.05 E-value=0.0015 Score=60.27 Aligned_cols=85 Identities=26% Similarity=0.331 Sum_probs=64.4
Q ss_pred HHHhhc-cCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhChhhHHHHHHHHHcCC
Q 000827 537 VIEPLL-IDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSK 615 (1265)
Q Consensus 537 ~i~~lL-~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~~l~s~ 615 (1265)
.+...| .|+++.||..+..+|+.+ +-+..+..|...+.+++..||..++.+++.+ |-++.++.|...+.++
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~~~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGEL----GDPEAIPALIELLKDEDPMVRRAAARALGRI----GDPEAIPALIKLLQDD 74 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCC----THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----HHHHTHHHHHHHHTC-
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHcCC
Confidence 334444 699999999988888854 3344455555556788999999999999866 4678999999999887
Q ss_pred chhHHHHHHHHHHH
Q 000827 616 KSWQARHTGIKIVQ 629 (1265)
Q Consensus 616 ~s~~~R~aal~~L~ 629 (1265)
+++..|+.++.+|+
T Consensus 75 ~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 75 DDEVVREAAAEALG 88 (88)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhcC
Confidence 65667999988875
No 112
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.02 E-value=0.42 Score=60.63 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000827 892 QICGTIKWRLNNKSAKVRQQAADLISRIAV 921 (1265)
Q Consensus 892 ~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~ 921 (1265)
++...++.++.|++..||..|-.++.-+++
T Consensus 620 ~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 620 EIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 477788899999999999999999988886
No 113
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.01 E-value=1.3 Score=52.91 Aligned_cols=158 Identities=15% Similarity=0.204 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCC-
Q 000827 868 ANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLN-NKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGE- 945 (1265)
Q Consensus 868 ~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~-d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d- 945 (1265)
+..++.++.+++..+...-..||.-+. ..|. ..-.+.+..+.++|.++.+...... +..|..|.. +..|
T Consensus 392 KiI~ida~rsLsl~Fp~k~~s~l~FL~----~~L~~eGg~eFK~~~Vdaisd~~~~~p~sk-EraLe~LC~----fIEDc 462 (898)
T COG5240 392 KIIAIDALRSLSLLFPSKKLSYLDFLG----SSLLQEGGLEFKKYMVDAISDAMENDPDSK-ERALEVLCT----FIEDC 462 (898)
T ss_pred eEEeHHHHHHHHhhCcHHHHHHHHHHH----HHHHhcccchHHHHHHHHHHHHHhhCchHH-HHHHHHHHH----HHhhc
Confidence 456788888777776655445555444 3333 3466777888888888776553322 223333322 2222
Q ss_pred CCHHHHHHHHHHHHHHHHHhCccc--CCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHH
Q 000827 946 EYPEVLGSILGALKAIVNVIGMTK--MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFEL 1023 (1265)
Q Consensus 946 ~~~~V~~~al~aL~~lv~~~g~~~--l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~L 1023 (1265)
+|+.+.-.++.-|+.= |+.. -..|+..|+.+++ | .|..||.+|+.|+...+-+..+.+.+. .+-..|
T Consensus 463 ey~~I~vrIL~iLG~E----gP~a~~P~~yvrhIyNR~i--L--EN~ivRsaAv~aLskf~ln~~d~~~~~---sv~~~l 531 (898)
T COG5240 463 EYHQITVRILGILGRE----GPRAKTPGKYVRHIYNRLI--L--ENNIVRSAAVQALSKFALNISDVVSPQ---SVENAL 531 (898)
T ss_pred chhHHHHHHHHHhccc----CCCCCCcchHHHHHHHHHH--H--hhhHHHHHHHHHHHHhccCccccccHH---HHHHHH
Confidence 3454444444333321 2222 2346677777665 3 345699999999999998866655554 333344
Q ss_pred HHHHhhchHHHHHHHHHHHHHH
Q 000827 1024 LEMLKAHKKGIRRATVNTFGYI 1045 (1265)
Q Consensus 1024 L~~Lk~~~~~iR~~a~~tlg~I 1045 (1265)
-.++.+.+..+|..|.-.+..+
T Consensus 532 kRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 532 KRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHHhhcccHHHHHHHHHHHHhh
Confidence 4677888888998877666554
No 114
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=1.9 Score=54.03 Aligned_cols=191 Identities=18% Similarity=0.171 Sum_probs=112.9
Q ss_pred HHHHHHHhccCC-CHhHHHHHHHHHHHHHhhcCCh-----hhHHHHhHHhcC---CCCCHHHHHHHHHHHHHHHhhcchh
Q 000827 456 KIMKLLLKVKNG-TPPQRKTALRQLTDKAREFGAG-----PLFNRILPLLMQ---PTLEDQERHLLVKVIDRVLYKLDEL 526 (1265)
Q Consensus 456 ~i~~lll~lkn~-~~~vR~~A~r~L~~~A~~~G~~-----~~~~~iLp~l~~---~~led~~R~~~v~vi~~l~~~l~~~ 526 (1265)
++-+||.-+.+. |+.....|+..|.+... +|-+ --.+.++|.|.. -.-.-+-...+.+.+..++.-++.-
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~-mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLS-MGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHh-hcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 788888888776 88888888887776544 3322 123445554432 1112233344555666666655543
Q ss_pred hhhhHH--HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhChhhH
Q 000827 527 VRPYVH--KILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPAL 604 (1265)
Q Consensus 527 v~p~~~--~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg~~~L 604 (1265)
+.-.++ -|-..++.++.=+.-.|-+.+..+|..+.+..+.+- .++.++..+
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~Ai---------------------------L~AG~l~a~ 299 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAI---------------------------LQAGALSAV 299 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHH---------------------------HhcccHHHH
Confidence 221111 222223333333333455555555555554433211 112223344
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCcc
Q 000827 605 LPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPY 679 (1265)
Q Consensus 605 lp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~ 679 (1265)
+.||-=+ + -...+.|+-+...+|..+...=-.++-..+|++...|+..+.++-..+|.|+..+++.+.++
T Consensus 300 LsylDFF--S---i~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~ 369 (1051)
T KOG0168|consen 300 LSYLDFF--S---IHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG 369 (1051)
T ss_pred HHHHHHH--H---HHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC
Confidence 4444211 1 23557788888999988876555678889999999999999999999999999999998754
No 115
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.94 E-value=0.75 Score=57.76 Aligned_cols=131 Identities=18% Similarity=0.255 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHH
Q 000827 906 AKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLG-EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPI 984 (1265)
Q Consensus 906 ~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~-d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~ 984 (1265)
+.||..+.-+++.++-. |+.+...++|.|..-|. .+...+|.+++-|++.|+.... -.++--+|.|...
T Consensus 945 ~~vra~~vvTlakmcLa-----h~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----am~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLA-----HDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----AMTDRYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----HHHHHhhHHHHHH
Confidence 57888888888877653 35677778888766554 3345789999999999987542 1246677889999
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHH-HHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCc
Q 000827 985 LKNRHEKVQENCIDLVGRIADRGAEFVPAREWMR-ICFELLEMLKAHKKGIRRATVNTFGYIAKAIGP 1051 (1265)
Q Consensus 985 L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~-il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp 1051 (1265)
|+++..-||..++..+..|...+ ++ .|.. ++.-++-.|-+....||.-+--+|+.|...-.|
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~--~v---Kw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFG--IV---KWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhh--hh---hcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999988752 11 2422 233444455667888999999999999876655
No 116
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.92 E-value=0.22 Score=60.74 Aligned_cols=170 Identities=17% Similarity=0.176 Sum_probs=107.4
Q ss_pred cHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcH
Q 000827 973 PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQ 1052 (1265)
Q Consensus 973 ~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~ 1052 (1265)
.+..++..++.-....+..||-.++..+..|....++. +..-+..+...++..+++..+.+|..|+.|+..+-..-+.+
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 44556666666666778999999999999998853321 11123566777888899999999999999999986433222
Q ss_pred --HHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhHHh
Q 000827 1053 --DVLATLLNNLK-VQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYA 1129 (1265)
Q Consensus 1053 --~vlp~Ll~~L~-~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~ 1129 (1265)
.+...|..-++ ++...+|..++..|+.-. .-+|-++.+-++-+.-++--+ ...+.+.+ .+...-+..
T Consensus 161 e~~v~n~l~~liqnDpS~EVRRaaLsnI~vdn------sTlp~IveRarDV~~anRrlv---Y~r~lpki-d~r~lsi~k 230 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDPSDEVRRAALSNISVDN------STLPCIVERARDVSGANRRLV---YERCLPKI-DLRSLSIDK 230 (892)
T ss_pred cccHHHHHHHHHhcCCcHHHHHHHHHhhccCc------ccchhHHHHhhhhhHHHHHHH---HHHhhhhh-hhhhhhHHH
Confidence 34444433332 566778888765544322 337777777665332222211 11122222 122223445
Q ss_pred HHHHHHHHhccCChhHHHHHHHHH
Q 000827 1130 VTPLLEDALMDRDLVHRQTAASAV 1153 (1265)
Q Consensus 1130 i~PlL~~~l~d~d~~~Rq~A~~~l 1153 (1265)
..-+|+.++.|++..+|+.+..++
T Consensus 231 rv~LlewgLnDRe~sVk~A~~d~i 254 (892)
T KOG2025|consen 231 RVLLLEWGLNDREFSVKGALVDAI 254 (892)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHH
Confidence 566889999999999999887654
No 117
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.92 E-value=2.2 Score=54.10 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhchHHH--HHhhccCCCCchH
Q 000827 505 EDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATM--IAAMRPDIDNIDE 582 (1265)
Q Consensus 505 ed~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~--~~~L~~~l~~~d~ 582 (1265)
++..|.-++|-+-... ..|.-+--++++++..+. ..|..++.---.=+-..++..+-..+ +.+++.++.|+++
T Consensus 32 n~~~kidAmK~iIa~M-~~G~dmssLf~dViK~~~----trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~ 106 (757)
T COG5096 32 NDYKKIDAMKKIIAQM-SLGEDMSSLFPDVIKNVA----TRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNE 106 (757)
T ss_pred ChHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCH
Confidence 6787877766664333 233334445555544442 34444444333333333443332222 2577788888888
Q ss_pred HHHHHHHHHHHHHHhhhChhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhH--HH-HHHHHHhhcCCCCh
Q 000827 583 YVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHL--RS-LVEIIEHGLNDENQ 659 (1265)
Q Consensus 583 ~vR~~aa~~l~~lA~~lg~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L--~~-ll~~l~~~L~De~~ 659 (1265)
++|..|.|.++.+=-.-=++.+++.+++++.++. ..+|++|+.++..+-. +.+++ .. ++..+...+.|++|
T Consensus 107 ~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~-ayVRk~Aalav~kly~-----ld~~l~~~~g~~~~l~~l~~D~dP 180 (757)
T COG5096 107 EIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPH-AYVRKTAALAVAKLYR-----LDKDLYHELGLIDILKELVADSDP 180 (757)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHHHh-----cCHhhhhcccHHHHHHHHhhCCCc
Confidence 8888777776654211115566667777777765 6777777777775432 22322 22 45555556667777
Q ss_pred hhHHHHHHHHHHH
Q 000827 660 KVRTITALSLAAL 672 (1265)
Q Consensus 660 ~VR~~A~~aL~~l 672 (1265)
.|-..|+.++..+
T Consensus 181 ~Vi~nAl~sl~~i 193 (757)
T COG5096 181 IVIANALASLAEI 193 (757)
T ss_pred hHHHHHHHHHHHh
Confidence 7777666655443
No 118
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.91 E-value=2.2 Score=53.93 Aligned_cols=174 Identities=11% Similarity=0.122 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhch-hhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhc---chHHHHHHHHHHHHHhhCC
Q 000827 870 VMLNGFGAVVNSLGQ-RVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQC---HEEQLMGHLGVVLYEYLGE 945 (1265)
Q Consensus 870 ~al~aL~~I~~~lg~-~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~---~~~~ll~~L~~~L~~~L~d 945 (1265)
..+.++.+++..|+. -+.|++|.|+..|..+..+.+..|-....++|+..+..-... .+..+.+.++.++..+-.|
T Consensus 507 ~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~D 586 (1005)
T KOG2274|consen 507 VKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSED 586 (1005)
T ss_pred hhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCC
Confidence 344455555555664 468999999999999999999988888888887776532211 1134566666666655555
Q ss_pred CCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCC----HHHHHHHHHHHHHHHhhCCCCcChHHHHHHHH
Q 000827 946 EYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRH----EKVQENCIDLVGRIADRGAEFVPAREWMRICF 1021 (1265)
Q Consensus 946 ~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~----~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~ 1021 (1265)
+ -|.+-+-..+.++++.. ....|+..-++|.|+.+|..+. ......+++.+..+.+.++.-++..-+.-.++
T Consensus 587 P--~V~~~~qd~f~el~q~~--~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~Fp 662 (1005)
T KOG2274|consen 587 P--QVASLAQDLFEELLQIA--ANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFP 662 (1005)
T ss_pred c--hHHHHHHHHHHHHHHHH--HhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhH
Confidence 4 56666666666666632 3345778889999999998766 56778899999999998766666542222333
Q ss_pred HHHHH-HhhchHHHHHHHHHHHHHHHH
Q 000827 1022 ELLEM-LKAHKKGIRRATVNTFGYIAK 1047 (1265)
Q Consensus 1022 ~LL~~-Lk~~~~~iR~~a~~tlg~Ia~ 1047 (1265)
.+.++ |.+.+......+.+||..+..
T Consensus 663 aVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 663 AVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HhHhheeecCChHHHHhHHHHHHHHHh
Confidence 34333 344466677788888877654
No 119
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.90 E-value=0.019 Score=60.73 Aligned_cols=93 Identities=18% Similarity=0.222 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCC
Q 000827 868 ANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEY 947 (1265)
Q Consensus 868 ~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~ 947 (1265)
|..++.++|.++-..+.-+.||+ |.+..+|+|+++.||.+|+.++.+|...--. .+-+.+...+...+.|++
T Consensus 5 R~n~i~~l~DL~~r~~~~ve~~~----~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i----k~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 5 RNNAIIALGDLCIRYPNLVEPYL----PNLYKCLRDEDPLVRKTALLVLSHLILEDMI----KVKGQLFSRILKLLVDEN 76 (178)
T ss_pred HHHHHHHHHHHHHhCcHHHHhHH----HHHHHHHCCCCHHHHHHHHHHHHHHHHcCce----eehhhhhHHHHHHHcCCC
Confidence 56778888877776665555555 5555999999999999999999998753110 111222223334568999
Q ss_pred HHHHHHHHHHHHHHHHHhCcc
Q 000827 948 PEVLGSILGALKAIVNVIGMT 968 (1265)
Q Consensus 948 ~~V~~~al~aL~~lv~~~g~~ 968 (1265)
++|+..+...|.++....++.
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~ 97 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPN 97 (178)
T ss_pred HHHHHHHHHHHHHHHHhccch
Confidence 999999999999998865443
No 120
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.90 E-value=0.0012 Score=48.03 Aligned_cols=30 Identities=33% Similarity=0.331 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000827 893 ICGTIKWRLNNKSAKVRQQAADLISRIAVV 922 (1265)
Q Consensus 893 ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~ 922 (1265)
|+|.++.+++|++++||.+|+.+++.|++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999864
No 121
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.065 Score=64.75 Aligned_cols=147 Identities=20% Similarity=0.200 Sum_probs=103.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcch----HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccC
Q 000827 895 GTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHE----EQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKM 970 (1265)
Q Consensus 895 p~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~----~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l 970 (1265)
|.|...|+-++..||.+|+.++-.+-....+..+ +.++++=...|+..|.|++|.||+.+...+..+...+.. +
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe--~ 254 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE--M 254 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH--H
Confidence 5667789999999999999998877765554332 346677677788889999999999888887777765521 2
Q ss_pred Cc--cHHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 000827 971 TP--PIKDLLPRLTPILK-NRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIA 1046 (1265)
Q Consensus 971 ~p--~l~~Llp~Ll~~L~-~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia 1046 (1265)
-| .+.++|..++.-+. +....||-++.+.+..|+.+... .+. +..+++.+=-.|.+....+|.++++.+-.|-
T Consensus 255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s-h~~--le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS-HPL--LEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc-hhH--HHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 22 24666666665443 45578999999999999876221 111 1233443334556778889999999887773
No 122
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.82 E-value=0.0093 Score=62.12 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHH-hchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000827 851 LLIDGILYAFQEQTSDDANVMLNGFGAVVNS-LGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAV 921 (1265)
Q Consensus 851 ~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~-lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~ 921 (1265)
.+++.+..-+.|...+-+-.|..++..+.+. -+..+.|.|||+++.|...|+.+++.|..++..+|.+|+.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3444444555554444456788888888888 5578999999999999999999999999999999998854
No 123
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.82 E-value=0.015 Score=61.17 Aligned_cols=140 Identities=20% Similarity=0.304 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHhch-hhhchHHHHHH------------HHHHHhcCCCHHHHHHHHHHHHHHHHHHhh---------
Q 000827 868 ANVMLNGFGAVVNSLGQ-RVKPYLPQICG------------TIKWRLNNKSAKVRQQAADLISRIAVVMKQ--------- 925 (1265)
Q Consensus 868 ~~~al~aL~~I~~~lg~-~~~p~Lp~ilp------------~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~--------- 925 (1265)
|..++.+|.++++.++. .+..|.+.++| .+.-+++|++++||.+|+.++..|-+..+.
T Consensus 3 R~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~ 82 (182)
T PF13251_consen 3 RQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESK 82 (182)
T ss_pred hHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcC
Confidence 66888999999998663 45555555544 345678899999999999999988864322
Q ss_pred ----cch------HHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHhCcccCC-ccHHhHHHHHHHHhcCCCHHHH
Q 000827 926 ----CHE------EQLMGHLGVVLYEYLG-EEYPEVLGSILGALKAIVNVIGMTKMT-PPIKDLLPRLTPILKNRHEKVQ 993 (1265)
Q Consensus 926 ----~~~------~~ll~~L~~~L~~~L~-d~~~~V~~~al~aL~~lv~~~g~~~l~-p~l~~Llp~Ll~~L~~~~~~Vr 993 (1265)
.|- ..++..+-..|...+. |.++.+...+++++..++++.--+.+. ..+..++..+...+.+.+..|+
T Consensus 83 ~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~ 162 (182)
T PF13251_consen 83 GPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVR 162 (182)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHH
Confidence 110 1123333334444454 667889999999999999887555555 3457777777888888889999
Q ss_pred HHHHHHHHHHHhhC
Q 000827 994 ENCIDLVGRIADRG 1007 (1265)
Q Consensus 994 e~ai~~ig~Ia~~~ 1007 (1265)
.+++.++|.+....
T Consensus 163 v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 163 VAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999998763
No 124
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.73 E-value=0.0017 Score=47.27 Aligned_cols=30 Identities=40% Similarity=0.473 Sum_probs=26.9
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHHH
Q 000827 646 LVEIIEHGLNDENQKVRTITALSLAALAEA 675 (1265)
Q Consensus 646 ll~~l~~~L~De~~~VR~~A~~aL~~lae~ 675 (1265)
|+|.+.++++|++++||.+|+.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 688999999999999999999999999874
No 125
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=3 Score=52.61 Aligned_cols=199 Identities=17% Similarity=0.277 Sum_probs=141.9
Q ss_pred CCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhc--ccch---HHHHHHHHHHHHHHhchhhhchHHHH
Q 000827 819 DESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQ--TSDD---ANVMLNGFGAVVNSLGQRVKPYLPQI 893 (1265)
Q Consensus 819 d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~--~~ed---~~~al~aL~~I~~~lg~~~~p~Lp~i 893 (1265)
+.++.||+..-+++...-..+|+ .+..-+++.+-.++.+. .++. .++.+-.|-++++.+|..-.+.+|.+
T Consensus 435 e~F~~YR~diSD~~~~~Y~ilgd-----~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl 509 (982)
T KOG2022|consen 435 EQFESYRKDISDLLMSSYSILGD-----GLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRL 509 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHH
Confidence 34567999888888877777773 22334455554455331 2222 36788999999999998888888887
Q ss_pred HHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCc
Q 000827 894 CGTIKWR-LNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTP 972 (1265)
Q Consensus 894 lp~Ll~~-L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p 972 (1265)
+.+.... +.-.++..-..+..+||.++.|+++. ...++.-+++|+..|+ .++....+...|..+++.+ ...+.|
T Consensus 510 ~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~--P~~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C-~~~L~p 584 (982)
T KOG2022|consen 510 FETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEH--PMYLNPSLPLLFQGLH--NSKESEQAISTLKTLCETC-PESLDP 584 (982)
T ss_pred HHhccccccccCChhHHHHHHHHHHHHHHHHhcC--CcccCchHHHHHHHhc--CchHHHHHHHHHHHHHHhh-hhhCch
Confidence 7655422 22237778888999999999999863 4567777777777776 3455556667799999988 667999
Q ss_pred cHHhHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhh-CCCCcChHHHHHHHHHHHHHHh
Q 000827 973 PIKDLLPRLTPILKNRH--EKVQENCIDLVGRIADR-GAEFVPAREWMRICFELLEMLK 1028 (1265)
Q Consensus 973 ~l~~Llp~Ll~~L~~~~--~~Vre~ai~~ig~Ia~~-~~~~~~~~e~~~il~~LL~~Lk 1028 (1265)
|...++..+-+.+...+ ...|.....+||.+.++ .++-.+.+ +|+++..++..+.
T Consensus 585 y~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~ky-l~~lin~il~qle 642 (982)
T KOG2022|consen 585 YADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKY-LMKLINPILSQLE 642 (982)
T ss_pred HHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHH-HHHHHHHHHHHHH
Confidence 99999999988887543 66899999999999988 44443333 6777766665543
No 126
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.56 E-value=0.18 Score=56.74 Aligned_cols=234 Identities=14% Similarity=0.221 Sum_probs=131.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCh-----h
Q 000827 733 LIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGV-----A 807 (1265)
Q Consensus 733 L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~-----~ 807 (1265)
|-..+.++|+..|..++..+..++.... +..+...-+..++.-|.. +. .|...+...+..+..+...... .
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp--~~~L~~~ev~~L~~F~~~-rl-~D~~~~~~~l~gl~~L~~~~~~~~~~~~ 79 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLP--PDFLSRQEVQVLLDFFCS-RL-DDHACVQPALKGLLALVKMKNFSPESAV 79 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCC--HhhccHHHHHHHHHHHHH-Hh-ccHhhHHHHHHHHHHHHhCcCCChhhHH
Confidence 3345678899999999999998887642 222322223334443332 22 2344444456666666533322 1
Q ss_pred hhHHHHHHHhc--CCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchh
Q 000827 808 DIVGRIVEDLK--DESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQR 885 (1265)
Q Consensus 808 ~il~~i~~~l~--d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~ 885 (1265)
.+++.+..... .-....|..+.+.+..++....... ..+....+.+++..+..+. |++..+.+|.-+- .+...
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l--~~~~~~fv~~~i~~~~gEk--DPRnLl~~F~l~~-~i~~~ 154 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL--QSMGDDFVYGFIQLIDGEK--DPRNLLLSFKLLK-VILQE 154 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH--HhchhHHHHHHHHHhccCC--CHHHHHHHHHHHH-HHHHh
Confidence 33444433222 2234678888887777766532211 1222334555555553222 3344444443222 22221
Q ss_pred --hhchHHHHHHHHHHH--------hcCCCHHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHhhCCCCHHHHHH
Q 000827 886 --VKPYLPQICGTIKWR--------LNNKSAKVRQQAADLISRIAVVMKQCH--EEQLMGHLGVVLYEYLGEEYPEVLGS 953 (1265)
Q Consensus 886 --~~p~Lp~ilp~Ll~~--------L~d~~~~VR~~A~~~lg~La~~l~~~~--~~~ll~~L~~~L~~~L~d~~~~V~~~ 953 (1265)
+.++..++...+.-. -+|+..--|+ .|...++.|+ ...+-+..++.|++.|....+.|+.-
T Consensus 155 ~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~e-------dLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 155 FDISEFAEDLFDVFSCYFPITFRPPPNDPYGITRE-------DLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred cccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHH-------HHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHH
Confidence 245555554433221 1233211121 2233333443 24466788999999999999999999
Q ss_pred HHHHHHHHHHHhCcccCCccHHhHHHHHH
Q 000827 954 ILGALKAIVNVIGMTKMTPPIKDLLPRLT 982 (1265)
Q Consensus 954 al~aL~~lv~~~g~~~l~p~l~~Llp~Ll 982 (1265)
++..|..++..+|...+.||+..|...|-
T Consensus 228 ~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 228 SLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999999999999889999988888773
No 127
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.50 E-value=2.4 Score=51.36 Aligned_cols=199 Identities=17% Similarity=0.149 Sum_probs=102.3
Q ss_pred hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCC----CcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHh
Q 000827 601 IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGC----AVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAA 676 (1265)
Q Consensus 601 ~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~----~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~ 676 (1265)
++.|...+...++++.++.--|-.+.+++.+...... .+..+-+.++|.+...|+.+-.+.--.+.+-++++.+..
T Consensus 69 l~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~ 148 (435)
T PF03378_consen 69 LQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELR 148 (435)
T ss_dssp HHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566677777888877666667667777655443221 233456778899888888776666677789999999987
Q ss_pred C-ccchhhhHHhHHHHHH-hhhccchH--HHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000827 677 A-PYGIESFDSVLKPLWK-GIRSHRGK--VLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVV 752 (1265)
Q Consensus 677 ~-p~~~~~~~~iL~~L~~-~l~~~~~~--~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de~~r~~al~~l 752 (1265)
. +...+.|..++++|+. .+|..++. ++..+++++-.--|... ..+.++..|+.+.-+.+.+...+ ..+++.+
T Consensus 149 ~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i--~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL 224 (435)
T PF03378_consen 149 PSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI--VANNQLEPILGVFQKLIASKAND--HYGFDLL 224 (435)
T ss_dssp S--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG------S-CHHHHHHHHHHHT-TTCH--HHHHHHH
T ss_pred CCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh--cchhhHHHHHHHHHHHHCCCCcc--hHHHHHH
Confidence 6 3445677888888875 46665543 44444444211111000 11223444566665665554222 1355666
Q ss_pred HHhhhccCCcchhhhhcchHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHhcCh
Q 000827 753 KQCVSTEGVEADYIRSDILPEFFRNFWVRRMAL-DRRNYKQLVETTVEIANKVGV 806 (1265)
Q Consensus 753 ~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~~-d~~~~~~ll~~~~~la~~~g~ 806 (1265)
..++.... .+. .+..++.++.-++.|-+.. ..+..+.++.++.-++.+.|.
T Consensus 225 ~~iv~~~p--~~~-l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~ 276 (435)
T PF03378_consen 225 ESIVENLP--PEA-LEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGP 276 (435)
T ss_dssp HHHHHHS---HHH-HGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHCC--HHH-HHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCH
Confidence 66655432 111 1334455555444443322 223344445554444444444
No 128
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.43 E-value=0.017 Score=60.18 Aligned_cols=119 Identities=18% Similarity=0.253 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh----C
Q 000827 932 MGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR----G 1007 (1265)
Q Consensus 932 l~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~----~ 1007 (1265)
..++++++++.|.|...--+--|..++.++++.-|.+.+.|.+++|++-|-..|+.++..|..+++.++..|+.+ |
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 456788888888776555566677888888888667789999999999999999999999999999999999544 4
Q ss_pred CCCcChHHHHHHHHHHHHHHhhc------------hHHHHHHHHHHHHHHHHhhCcHH
Q 000827 1008 AEFVPAREWMRICFELLEMLKAH------------KKGIRRATVNTFGYIAKAIGPQD 1053 (1265)
Q Consensus 1008 ~~~~~~~e~~~il~~LL~~Lk~~------------~~~iR~~a~~tlg~Ia~~iGp~~ 1053 (1265)
+..+|++ ..+++ .++.+++. .++++....+||..+-+..|++.
T Consensus 116 ~aLvPyy--rqLLp-~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA 170 (183)
T PF10274_consen 116 EALVPYY--RQLLP-VLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDA 170 (183)
T ss_pred HHHHHHH--HHHHH-HHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhH
Confidence 4444543 23333 33333322 35666777778887777777754
No 129
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=4.2 Score=50.76 Aligned_cols=126 Identities=17% Similarity=0.230 Sum_probs=79.6
Q ss_pred HhhccCCCCc-hHHHHHHHHHHHHHHHhhhC--hhhHHHHH-------HHHHcCCchhHHHHHHHHHHHHHHHHhCCCcc
Q 000827 571 AAMRPDIDNI-DEYVRNTTARAFSVVASALG--IPALLPFL-------KAVCQSKKSWQARHTGIKIVQQIAILIGCAVL 640 (1265)
Q Consensus 571 ~~L~~~l~~~-d~~vR~~aa~~l~~lA~~lg--~~~Llp~L-------~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~ 640 (1265)
.++...+++. |-.||-++++++..+..-.. -..++|++ ..++..-.+-+.|-..+..++-+.+.++..+.
T Consensus 529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~ 608 (978)
T KOG1993|consen 529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA 608 (978)
T ss_pred HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 3444455555 66799999999988876533 23344443 33333322244566666666666666777788
Q ss_pred hhHHHHHHHHHhhcC--CCChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhc
Q 000827 641 PHLRSLVEIIEHGLN--DENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRS 697 (1265)
Q Consensus 641 p~L~~ll~~l~~~L~--De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~ 697 (1265)
||...+++.+-..-. .+++-.|.+-..++-++..+++..- ..+-+++-++.+...|
T Consensus 609 P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS-~~~~~fL~pVIel~~D 666 (978)
T KOG1993|consen 609 PYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQS-FEFYPFLYPVIELSTD 666 (978)
T ss_pred HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCC-ccchHHHHHHHHHhcC
Confidence 887777666544332 2688999999999999999887532 2344666666665544
No 130
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.39 E-value=0.16 Score=58.58 Aligned_cols=124 Identities=18% Similarity=0.213 Sum_probs=90.1
Q ss_pred HHHhchhhhc--hHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 000827 879 VNSLGQRVKP--YLPQICGT-IKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSIL 955 (1265)
Q Consensus 879 ~~~lg~~~~p--~Lp~ilp~-Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al 955 (1265)
.+.+...+.| .|..++.. |++.+++.++.||..|..++|-++-.-+... .+.+..+... +.....+|+..++
T Consensus 11 L~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-~~~l~l~~~~----~~~~~~~v~~~al 85 (298)
T PF12719_consen 11 LENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-KEHLPLFLQA----LQKDDEEVKITAL 85 (298)
T ss_pred HHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-HHHHHHHHHH----HHhCCHHHHHHHH
Confidence 3333333443 34466644 4599999999999999999998886533211 2333333333 3334789999999
Q ss_pred HHHHHHHHHhCcccCCccH--------HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC
Q 000827 956 GALKAIVNVIGMTKMTPPI--------KDLLPRLTPILKNRHEKVQENCIDLVGRIADRG 1007 (1265)
Q Consensus 956 ~aL~~lv~~~g~~~l~p~l--------~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~ 1007 (1265)
.++-.++-..|...+.... ..++..+...|.+.+..+|..+++.+..|.-++
T Consensus 86 ~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 86 KALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred HHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999877665444 478889999999999999999999999987764
No 131
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.37 E-value=0.28 Score=59.99 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHHHhhhC--hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCC
Q 000827 581 DEYVRNTTARAFSVVASALG--IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDEN 658 (1265)
Q Consensus 581 d~~vR~~aa~~l~~lA~~lg--~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~ 658 (1265)
+..+++-+|+.|..+.+.+. -.+.+.-+..+|.+.+ ...|..|++.|-.+|.... .|+..+..+|.++|+.++
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhccc
Confidence 34477788888888888765 4567778888898877 6899999999998886543 588899999999999888
Q ss_pred hhhHHHHHHHHHHHHHH
Q 000827 659 QKVRTITALSLAALAEA 675 (1265)
Q Consensus 659 ~~VR~~A~~aL~~lae~ 675 (1265)
+..+.+.-++|.++...
T Consensus 110 ~~E~~~v~~sL~~ll~~ 126 (556)
T PF05918_consen 110 PVELDAVKNSLMSLLKQ 126 (556)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88888887777776644
No 132
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=1.4 Score=54.07 Aligned_cols=224 Identities=18% Similarity=0.179 Sum_probs=125.1
Q ss_pred HHhcCCC--HHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcH--HHHHHH
Q 000827 983 PILKNRH--EKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQ--DVLATL 1058 (1265)
Q Consensus 983 ~~L~~~~--~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~--~vlp~L 1058 (1265)
++|.+.. .-||..+.-|+=.|-+..++.++.-+|-.-+..|| .+..-.+--+++.-+..|++...+. ..++.-
T Consensus 153 KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL---~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~a 229 (938)
T KOG1077|consen 153 KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLL---DDQHMGVVTAATSLIEALVKKNPESYKTCLPLA 229 (938)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHh---CccccceeeehHHHHHHHHHcCCHHHhhhHHHH
Confidence 4444433 56788777888888888888888877755444444 5555444455555666666554432 112111
Q ss_pred HHh-----------------hcccchhhHHHHHHHHHHHHhhcC-C------cccHHHHHhhcCCC-------chhHHHH
Q 000827 1059 LNN-----------------LKVQERQNRVCTTVAIAIVAETCS-P------FTVLPALMNEYRVP-------ELNVQNG 1107 (1265)
Q Consensus 1059 l~~-----------------L~~~e~~~R~~~~~ai~~l~e~~g-p------~~vlPaL~~~~~~~-------~~~vq~~ 1107 (1265)
+.. +.++.+++.+-....+.+. .... + +.++-.+++..+.| ..|++|+
T Consensus 230 vs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~na 308 (938)
T KOG1077|consen 230 VSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNA 308 (938)
T ss_pred HHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHH
Confidence 111 1233344443333222221 0000 0 23455566554422 2355665
Q ss_pred HH-HHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhcc-cCCh
Q 000827 1108 VL-KSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIF-ETSP 1185 (1265)
Q Consensus 1108 vl-~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~-~~s~ 1185 (1265)
|| .++++++. -+.....+......|-+.+.+++..+|..|.+.+.+++..- ..-|++.+....++..+= +..-
T Consensus 309 VLFeaI~l~~h--~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~---~s~davK~h~d~Ii~sLkterDv 383 (938)
T KOG1077|consen 309 VLFEAISLAIH--LDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSE---FSIDAVKKHQDTIINSLKTERDV 383 (938)
T ss_pred HHHHHHHHHHH--cCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhcc---chHHHHHHHHHHHHHHhccccch
Confidence 53 56665553 22334455666778888999999999999999998887532 123555565666655554 5667
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHhh
Q 000827 1186 HVINAVMEAIEGMRVALGAAVVLNYCLQGL 1215 (1265)
Q Consensus 1186 ~v~~~~~~a~~~~~~~~g~~~~~~~~~~gl 1215 (1265)
.||..+++.+=++......-.+..-++|-|
T Consensus 384 SirrravDLLY~mcD~~Nak~IV~elLqYL 413 (938)
T KOG1077|consen 384 SIRRRAVDLLYAMCDVSNAKQIVAELLQYL 413 (938)
T ss_pred HHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Confidence 788888887665555444433333334434
No 133
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.19 E-value=0.48 Score=54.60 Aligned_cols=163 Identities=16% Similarity=0.174 Sum_probs=107.2
Q ss_pred cHHhHHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCc
Q 000827 973 PIKDLLPRLT-PILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGP 1051 (1265)
Q Consensus 973 ~l~~Llp~Ll-~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp 1051 (1265)
.+..++..|+ +.+++.+..||+.++.|+|..+-...+.. ...+..++..++.....+|..|++++..+....|.
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCc
Confidence 3457777665 88899999999999999998886544321 23344455566666888999999999999887774
Q ss_pred H---------------HHHHHHHHhhcccchhhHHHHHHHHHHHHh--hcCC-cccHHHHHhhcCCCchhHHHHHHHHHH
Q 000827 1052 Q---------------DVLATLLNNLKVQERQNRVCTTVAIAIVAE--TCSP-FTVLPALMNEYRVPELNVQNGVLKSLS 1113 (1265)
Q Consensus 1052 ~---------------~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e--~~gp-~~vlPaL~~~~~~~~~~vq~~vl~al~ 1113 (1265)
. .++..+...+...+..+|..++-+++-+.= ...+ ..++-.|+-.|=.|...-...+-++|+
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 98 DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 3 355566667777766777777766665432 2233 456667776676665433335678899
Q ss_pred HHHHHhchhhh---h-hHHhHHHHHHHHhcc
Q 000827 1114 FLFEYIGEMGK---D-YIYAVTPLLEDALMD 1140 (1265)
Q Consensus 1114 ~l~~~ig~~~~---~-yi~~i~PlL~~~l~d 1140 (1265)
++|+....... . ....++|.+...+..
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 98887643222 1 234566666654433
No 134
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.18 Score=62.82 Aligned_cols=185 Identities=12% Similarity=0.082 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCC
Q 000827 867 DANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEE 946 (1265)
Q Consensus 867 d~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~ 946 (1265)
.+..++..+..+++.=...-.-....++...+..|+|.+.-|--+|+..+..+++... +.+++.|.....+.-+-.
T Consensus 743 ik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~----e~il~dL~e~Y~s~k~k~ 818 (982)
T KOG4653|consen 743 IKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP----EDILPDLSEEYLSEKKKL 818 (982)
T ss_pred chHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc----hhhHHHHHHHHHhcccCC
Confidence 3567777777777632211112234577888899999999999999998888888743 456666655332221111
Q ss_pred CHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHH
Q 000827 947 YPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEM 1026 (1265)
Q Consensus 947 ~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~ 1026 (1265)
-++-+-.+-.|+..++...|. -+..|...|+.+.+...++++...|.+++..+|.++....-.++.+ +..+++-++..
T Consensus 819 ~~d~~lkVGEai~k~~qa~Ge-l~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~-~~ev~~~Il~l 896 (982)
T KOG4653|consen 819 QTDYRLKVGEAILKVAQALGE-LVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDF-FHEVLQLILSL 896 (982)
T ss_pred CccceehHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHH
Confidence 133334444677777777654 3445788999999999998888899999999999987622112221 34555555554
Q ss_pred Hhh-chHHHHHHHHHHHHHHHHhhCcHHHHHHH
Q 000827 1027 LKA-HKKGIRRATVNTFGYIAKAIGPQDVLATL 1058 (1265)
Q Consensus 1027 Lk~-~~~~iR~~a~~tlg~Ia~~iGp~~vlp~L 1058 (1265)
.+. ....+||+|+..+..+-...| ++.+|.+
T Consensus 897 ~~~d~s~~vRRaAv~li~~lL~~tg-~dlLpil 928 (982)
T KOG4653|consen 897 ETTDGSVLVRRAAVHLLAELLNGTG-EDLLPIL 928 (982)
T ss_pred HccCCchhhHHHHHHHHHHHHhccc-hhhHHHH
Confidence 443 378899999999998887777 5666654
No 135
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=96.04 E-value=0.21 Score=61.54 Aligned_cols=223 Identities=17% Similarity=0.189 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHHHHhhCCC
Q 000827 868 ANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVM-KQCHEEQLMGHLGVVLYEYLGEE 946 (1265)
Q Consensus 868 ~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l-~~~~~~~ll~~L~~~L~~~L~d~ 946 (1265)
+...+.+|..+...+..++ ....|+|+++..|.+.. .--...-++-.|++.. ..|+...+++.|.+++-. ..
T Consensus 290 Ks~Flk~Ls~~ip~fp~rv--~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~---~~ 362 (700)
T KOG2137|consen 290 KSSFLKGLSKLIPTFPARV--LFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSA---SD 362 (700)
T ss_pred HHHHHHHHHHhhccCCHHH--HHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhcc---CC
Confidence 4566666776666666543 23345555556554431 0011111112222211 113444556666655421 33
Q ss_pred CHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCC-CCcChHHHHHHHHHHHH
Q 000827 947 YPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGA-EFVPAREWMRICFELLE 1025 (1265)
Q Consensus 947 ~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~-~~~~~~e~~~il~~LL~ 1025 (1265)
..+++-.+++-+..|.+.+..+. ..+.|+|.|...+++..-.+|+.++..++.+++... .++.. .||+.+-+
T Consensus 363 ~~~~~l~i~e~mdlL~~Kt~~e~---~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~----~ilP~l~~ 435 (700)
T KOG2137|consen 363 PKQALLFILENMDLLKEKTPPEE---VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQ----AILPRLKN 435 (700)
T ss_pred cccchhhHHhhHHHHHhhCChHH---HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHH----HHHHHhhc
Confidence 34677888888888888776554 357899999999999999999999999999998843 23222 45555433
Q ss_pred -HHhhchHHHHHHHHHHHHHHHHhhCcHHHHHH---HHHhhcccchhhHHHHHHH--HHHHHhhcC-C---cccHHHHHh
Q 000827 1026 -MLKAHKKGIRRATVNTFGYIAKAIGPQDVLAT---LLNNLKVQERQNRVCTTVA--IAIVAETCS-P---FTVLPALMN 1095 (1265)
Q Consensus 1026 -~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~---Ll~~L~~~e~~~R~~~~~a--i~~l~e~~g-p---~~vlPaL~~ 1095 (1265)
.++..+..++.+++-||+.+++.+....+++. ++.+.+..+..+-.+.... ..++-.+.| . ..|+|.++.
T Consensus 436 l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ 515 (700)
T KOG2137|consen 436 LAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIP 515 (700)
T ss_pred chhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhh
Confidence 45566888999999999999999887755544 4455566666554443322 223333444 2 357776665
Q ss_pred hcCCCchhH
Q 000827 1096 EYRVPELNV 1104 (1265)
Q Consensus 1096 ~~~~~~~~v 1104 (1265)
....+.+++
T Consensus 516 ls~~~~L~~ 524 (700)
T KOG2137|consen 516 LSVAPSLNG 524 (700)
T ss_pred hhhcccccH
Confidence 543333333
No 136
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=5.4 Score=48.26 Aligned_cols=132 Identities=14% Similarity=0.139 Sum_probs=84.4
Q ss_pred CChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhh--cccchHHHHHHHHHHHHHHhchhhhchHHHHHHHH
Q 000827 820 ESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQE--QTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTI 897 (1265)
Q Consensus 820 ~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e--~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~L 897 (1265)
++-.+|..+.+.+..++..+|++.. ..+ +...+.+ ...+..++++-.+..++......-.+.+|+++..+
T Consensus 364 ~f~~fR~~v~dvl~Dv~~iigs~e~----lk~----~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i 435 (559)
T KOG2081|consen 364 EFFEFRLKVGDVLKDVAFIIGSDEC----LKQ----MYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLI 435 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHH----HHH----HHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHH
Confidence 3457888899999888888886431 111 2223333 22334578888888888887766666677776555
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHh
Q 000827 898 KWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI 965 (1265)
Q Consensus 898 l~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~ 965 (1265)
.++= ....+|..++.++|++.+|+... ..++..+...+...+.+.. ....+..++..++..+
T Consensus 436 ~nlp--~Q~~~~~ts~ll~g~~~ew~~~~--p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c 497 (559)
T KOG2081|consen 436 CNLP--EQAPLRYTSILLLGEYSEWVEQH--PELLEPVLRYIRQGLQLKR--LASAAALAFHRICSAC 497 (559)
T ss_pred hCCc--cchhHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHH
Confidence 4322 23449999999999999999763 3455555555544444332 5555666666666655
No 137
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=95.99 E-value=6 Score=48.62 Aligned_cols=136 Identities=12% Similarity=0.068 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHH---hchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHHhh
Q 000827 868 ANVMLNGFGAVVNS---LGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQL-MGHLGVVLYEYL 943 (1265)
Q Consensus 868 ~~~al~aL~~I~~~---lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~l-l~~L~~~L~~~L 943 (1265)
+.+++.+|-.+... +...+ -=..++..+++++.|+.-.|..++..+|..|+--...-. ..+ -...+..+.+.+
T Consensus 394 ~aaa~l~~~s~srsV~aL~tg~--~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~k-skfl~~ngId~l~s~~ 470 (678)
T KOG1293|consen 394 VAAALLCLKSFSRSVSALRTGL--KRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLK-SKFLRNNGIDILESML 470 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC--ccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHH-HHHHHcCcHHHHHHHh
Confidence 45666666555443 33332 223566777788899999999998888887776444322 223 344666777888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCcc-cCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000827 944 GEEYPEVLGSILGALKAIVNVIGMT-KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 944 ~d~~~~V~~~al~aL~~lv~~~g~~-~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~ 1006 (1265)
.+.++.++.+.+|+|..++=..... .+.++-+--...|....+|+++.|||.|..++-.+...
T Consensus 471 ~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 471 TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 8999999999999999997543222 22333333345566667788899999999888777654
No 138
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.36 Score=55.14 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=89.1
Q ss_pred cchHHHHHHHHHHHHHHhchhhhchHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcc----hHHHHHHHHHHH
Q 000827 865 SDDANVMLNGFGAVVNSLGQRVKPYLP-QICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCH----EEQLMGHLGVVL 939 (1265)
Q Consensus 865 ~ed~~~al~aL~~I~~~lg~~~~p~Lp-~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~----~~~ll~~L~~~L 939 (1265)
.+++..++.-|...++.++..-. +++ ..+..++..+++.+..||..|+++||..+..-..+. +...+.+|+.++
T Consensus 97 le~ke~ald~Le~lve~iDnAnd-l~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNAND-LISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHh-HhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 35577888888888887774321 111 223334459999999999999999999987433322 112455555554
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHHHhCc--ccCCccHHhHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhh
Q 000827 940 YEYLGEEYPEVLGSILGALKAIVNVIGM--TKMTPPIKDLLPRLTPILKN--RHEKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 940 ~~~L~d~~~~V~~~al~aL~~lv~~~g~--~~l~p~l~~Llp~Ll~~L~~--~~~~Vre~ai~~ig~Ia~~ 1006 (1265)
. .+..-+++..++.|+..++...-+ ..|.+ ++. +..|.+++++ .+.+.+..++.+++.+...
T Consensus 176 s---~~~~~~~r~kaL~AissLIRn~~~g~~~fl~-~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 176 S---SDDPNTVRTKALFAISSLIRNNKPGQDEFLK-LNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred c---cCCCchHHHHHHHHHHHHHhcCcHHHHHHHh-cCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 3 455567899999999999986521 12211 111 3456677777 4567788889999988765
No 139
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=1 Score=56.42 Aligned_cols=189 Identities=12% Similarity=0.170 Sum_probs=120.9
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhch
Q 000827 810 VGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPY 889 (1265)
Q Consensus 810 l~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~ 889 (1265)
+......+.|+..++|..++..+.+++..=..+.. -....++..++..+.+..+-+.-+++.++..+|+...+.+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~--~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i--- 803 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATL--IQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI--- 803 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhh--hhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh---
Confidence 55556677888899999998888888775432221 1122344555555543323233467777777777644433
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcc
Q 000827 890 LPQICGTIKWRLNNKS-AKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMT 968 (1265)
Q Consensus 890 Lp~ilp~Ll~~L~d~~-~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~ 968 (1265)
||.+...-. ..++++ .+-|-..-++|++++...+.-+ ..+...|+..++....|++.+.|.+.|.+++.++.... .
T Consensus 804 l~dL~e~Y~-s~k~k~~~d~~lkVGEai~k~~qa~Gel~-~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a-~ 880 (982)
T KOG4653|consen 804 LPDLSEEYL-SEKKKLQTDYRLKVGEAILKVAQALGELV-FKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA-F 880 (982)
T ss_pred HHHHHHHHH-hcccCCCccceehHHHHHHHHHHHhccHH-HHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh-h
Confidence 233222111 222332 4445555577888877766533 24555677777777788888889999999999998763 2
Q ss_pred cCCccHHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhh
Q 000827 969 KMTPPIKDLLPRLTPILKN-RHEKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 969 ~l~p~l~~Llp~Ll~~L~~-~~~~Vre~ai~~ig~Ia~~ 1006 (1265)
.+..++.+++..++.+.+- ...-+|++|+..+..+-..
T Consensus 881 ~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 881 QVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred hhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 2344778888888877764 4578999999999988876
No 140
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.89 E-value=2.2 Score=47.95 Aligned_cols=228 Identities=14% Similarity=0.149 Sum_probs=129.8
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHH
Q 000827 813 IVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQ 892 (1265)
Q Consensus 813 i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ 892 (1265)
+-..+.++++..|..++..+..++..++...........+++-+...+.+ ......++.++.+++.. ..--......
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~-~~~~~~~~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALVKM-KNFSPESAVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHhC-cCCChhhHHH
Confidence 34567788899999999999999998876543333233333333333311 01112346666666522 2111222344
Q ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHhhcc---hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCc
Q 000827 893 ICGTIKWRLNN--KSAKVRQQAADLISRIAVVMKQCH---EEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 967 (1265)
Q Consensus 893 ilp~Ll~~L~d--~~~~VR~~A~~~lg~La~~l~~~~---~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~ 967 (1265)
++..++...+. ....+|..+..++..+........ ...++..++..+ -||.+|+-+--++.-+..++..+.
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~---~gEkDPRnLl~~F~l~~~i~~~~~- 156 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLI---DGEKDPRNLLLSFKLLKVILQEFD- 156 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHhcc-
Confidence 55555443332 246788888888887776533211 112333332222 378899988888888888877663
Q ss_pred ccCCccHHhHHHHHHHH----hc----CCC----HHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHH
Q 000827 968 TKMTPPIKDLLPRLTPI----LK----NRH----EKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIR 1035 (1265)
Q Consensus 968 ~~l~p~l~~Llp~Ll~~----L~----~~~----~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR 1035 (1265)
+.++.+++...+.-- ++ ++. +.++.+...||. +.+.|. ...++.|++.|.+....++
T Consensus 157 --~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~----s~~~fa-----~~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 157 --ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS----STPLFA-----PFAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred --cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc----CcHhhH-----HHHHHHHHHHHcCCCcHHH
Confidence 344445544443221 11 111 233333333332 222231 2456677888998888899
Q ss_pred HHHHHHHHHHHHhhCcHHHHHHH
Q 000827 1036 RATVNTFGYIAKAIGPQDVLATL 1058 (1265)
Q Consensus 1036 ~~a~~tlg~Ia~~iGp~~vlp~L 1058 (1265)
.-+.+++...+...|+..+.+.+
T Consensus 226 ~D~L~tL~~c~~~y~~~~~~~~~ 248 (262)
T PF14500_consen 226 LDSLQTLKACIENYGADSLSPHW 248 (262)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHH
Confidence 99999999999999988776654
No 141
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.88 E-value=0.72 Score=56.59 Aligned_cols=55 Identities=15% Similarity=0.294 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhhhhhhhHh-----hhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccC
Q 000827 702 VLAAFLKAIGFIIPLMDAL-----YASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEG 760 (1265)
Q Consensus 702 ~la~~l~a~~~lip~~~~~-----~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~ 760 (1265)
.+..++.++..-+|++... +.+|+...|++ .+.+-+++.+-..|+++++++...+
T Consensus 241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP----~l~~l~e~~kl~lLk~lAE~s~~~~ 300 (556)
T PF05918_consen 241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLP----KLSDLPEDRKLDLLKLLAELSPFCG 300 (556)
T ss_dssp HHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCC----CTT-----HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcC----ChhhCChHHHHHHHHHHHHHcCCCC
Confidence 4445555555555655432 23344444444 3333356677788888888876544
No 142
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.87 E-value=0.46 Score=51.89 Aligned_cols=95 Identities=14% Similarity=0.266 Sum_probs=65.3
Q ss_pred HhcChhhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhh--cccchHHHHHHHHHHHH
Q 000827 802 NKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQE--QTSDDANVMLNGFGAVV 879 (1265)
Q Consensus 802 ~~~g~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e--~~~ed~~~al~aL~~I~ 879 (1265)
.+.|.++-+..+.+.+.++|.-+|..++-+++++... .-++.+...+.+ ...-+|.-+..|||.|+
T Consensus 181 Rn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 181 RNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSP------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred hccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccch------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc
Confidence 3456677788889999999999999988777655321 112223333322 12234667778888776
Q ss_pred HHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000827 880 NSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISR 918 (1265)
Q Consensus 880 ~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~ 918 (1265)
. ++.+..|...++|+.+.||+.+.-++.-
T Consensus 249 ~----------e~~~~vL~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 249 D----------EDCVEVLKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred C----------HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5 4677778899999999999998877653
No 143
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.86 E-value=2.4 Score=51.27 Aligned_cols=211 Identities=14% Similarity=0.219 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHH----hcCC-CHHHHHHHHHHHHHHHHHHh
Q 000827 850 ELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWR----LNNK-SAKVRQQAADLISRIAVVMK 924 (1265)
Q Consensus 850 ~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~----L~d~-~~~VR~~A~~~lg~La~~l~ 924 (1265)
..++..++..+....+.+.+..+.++-.++..++..+.|+...+++.|... .+|+ +|.--.-.+++|+.+.+...
T Consensus 25 ~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~ 104 (435)
T PF03378_consen 25 QQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVC 104 (435)
T ss_dssp HHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhcc
Confidence 455555665554332233357777888888888888778777766655554 4565 78888888999998887654
Q ss_pred hcchH---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHH-hcCCCHHHHHHHHHHH
Q 000827 925 QCHEE---QLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPI-LKNRHEKVQENCIDLV 1000 (1265)
Q Consensus 925 ~~~~~---~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~-L~~~~~~Vre~ai~~i 1000 (1265)
....+ .+-+.|.+.+..-|..+..+...-++.-|..+++.-....+.+....|+|.|+.- +=...-.| -+.+.++
T Consensus 105 ~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL 183 (435)
T PF03378_consen 105 EADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLL 183 (435)
T ss_dssp GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHH
Confidence 32211 3445555555555666555666667777788887654344555566666666521 11111112 3444555
Q ss_pred HHHHhhCCCCc-ChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcHH-------HHHHHHHhhc
Q 000827 1001 GRIADRGAEFV-PAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQD-------VLATLLNNLK 1063 (1265)
Q Consensus 1001 g~Ia~~~~~~~-~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~-------vlp~Ll~~L~ 1063 (1265)
..+.+.++.++ ....+..++..+-+++.... .-..+.+-+..|...+.++. ++..|+..|+
T Consensus 184 ~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~--~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq 252 (435)
T PF03378_consen 184 QAYIKKDPSFIVANNQLEPILGVFQKLIASKA--NDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQ 252 (435)
T ss_dssp HHHHHHHGGG----S-CHHHHHHHHHHHT-TT--CHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHH
T ss_pred HHHHHhCchhhcchhhHHHHHHHHHHHHCCCC--cchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHh
Confidence 55555544433 11123344444433333321 22346677777777776643 4444555554
No 144
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.19 Score=55.96 Aligned_cols=136 Identities=21% Similarity=0.236 Sum_probs=103.6
Q ss_pred ccchHHHHHHHHHHHHH---HhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 000827 864 TSDDANVMLNGFGAVVN---SLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLY 940 (1265)
Q Consensus 864 ~~ed~~~al~aL~~I~~---~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~ 940 (1265)
.+++|..-+.+|..|.. .-.+.+.+-|..++..+++.++|+...|-.+||-+++.|...+.... .+.+..+...|+
T Consensus 98 ~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i-~~~ld~lv~~Ll 176 (334)
T KOG2933|consen 98 SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI-DQELDDLVTQLL 176 (334)
T ss_pred chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 45667666666655543 33345667788888899999999999999999999999999876543 224555555665
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC
Q 000827 941 EYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG 1007 (1265)
Q Consensus 941 ~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~ 1007 (1265)
-.-++...-|++.+-.||..++..+.+ ..+++.|.+.+++.+..+|..+.-++.......
T Consensus 177 ~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl 236 (334)
T KOG2933|consen 177 HKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRL 236 (334)
T ss_pred hhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccceec
Confidence 555566677999999999999987754 458888999999999999998888887766653
No 145
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.84 E-value=1.7 Score=52.17 Aligned_cols=173 Identities=16% Similarity=0.185 Sum_probs=105.5
Q ss_pred cHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcH
Q 000827 973 PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQ 1052 (1265)
Q Consensus 973 ~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~ 1052 (1265)
.+.+++-.++..+...+++||..++..++.+..+.++.-.. -+..++..|.+.+-+..+.+|+.|+.|+...-+--|.+
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~-l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEV-LANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 45666666777777888999999999999999884432110 02234445556666778999999999999987655543
Q ss_pred --HHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhH-H
Q 000827 1053 --DVLATLLNNLK-VQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYI-Y 1128 (1265)
Q Consensus 1053 --~vlp~Ll~~L~-~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi-~ 1128 (1265)
.+...|+..++ ++...+|..++.-|.. ...-.|-++.+-++-+..-+..+ .+.+.+.+|.....-+ .
T Consensus 167 en~~~n~l~~~vqnDPS~EVRr~allni~v------dnsT~p~IlERarDv~~anRr~v---Y~r~Lp~iGd~~~lsi~k 237 (885)
T COG5218 167 ENRIVNLLKDIVQNDPSDEVRRLALLNISV------DNSTYPCILERARDVSGANRRMV---YERCLPRIGDLKSLSIDK 237 (885)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHeee------CCCcchhHHHHhhhhhHHHHHHH---HHHHhhhhcchhhccccc
Confidence 23334444333 4455677765433221 12336777776655432111111 1222344454332222 2
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHH
Q 000827 1129 AVTPLLEDALMDRDLVHRQTAASAVKHM 1156 (1265)
Q Consensus 1129 ~i~PlL~~~l~d~d~~~Rq~A~~~l~~l 1156 (1265)
.+. +++-++.|++..+|..+..++.+-
T Consensus 238 ri~-l~ewgl~dRe~sv~~a~~d~ia~~ 264 (885)
T COG5218 238 RIL-LMEWGLLDREFSVKGALVDAIASA 264 (885)
T ss_pred eeh-hhhhcchhhhhhHHHHHHHHHHHH
Confidence 334 788899999999999888777553
No 146
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.82 E-value=0.16 Score=56.65 Aligned_cols=166 Identities=18% Similarity=0.157 Sum_probs=93.6
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHH--HHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhh
Q 000827 606 PFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLR--SLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIES 683 (1265)
Q Consensus 606 p~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~--~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~ 683 (1265)
..|..++++.+....++.++.+++..+..-- -...+. ..++.|...+.++++.||..|++++.+++..... ...
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~--nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en--~~~ 90 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPF--NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN--QEQ 90 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChh--HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh--HHH
Confidence 4444555543335677777777775432111 011222 2578889999999999999999999988755432 223
Q ss_pred hHHhHHHHHHhhhcc--chHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCC
Q 000827 684 FDSVLKPLWKGIRSH--RGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGV 761 (1265)
Q Consensus 684 ~~~iL~~L~~~l~~~--~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~ 761 (1265)
.+..++.+++.+... .+....+-++.+..+- +...| ...+...++.++..+.+.+...|..+++++..+......
T Consensus 91 Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt--v~~~~-~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~ 167 (254)
T PF04826_consen 91 IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLT--VTNDY-HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDM 167 (254)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccC--CCcch-hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHH
Confidence 345666666655433 2223233344443221 11111 111222355666777888999999999999877654322
Q ss_pred cchhhhhcchHHHHHHH
Q 000827 762 EADYIRSDILPEFFRNF 778 (1265)
Q Consensus 762 ~~~~l~~~ilp~l~~~~ 778 (1265)
..+.+..+.+..|+.-|
T Consensus 168 ~~~Ll~~q~~~~~~~Lf 184 (254)
T PF04826_consen 168 TRELLSAQVLSSFLSLF 184 (254)
T ss_pred HHHHHhccchhHHHHHH
Confidence 23333344555555443
No 147
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.81 E-value=1.2 Score=54.62 Aligned_cols=107 Identities=12% Similarity=0.146 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcc
Q 000827 889 YLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMT 968 (1265)
Q Consensus 889 ~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~ 968 (1265)
++.+++-.|+.....++-.||..++.+|..+....+.- ++.+.+.|...|...+.|..|.||..|+.||..+-..-+.+
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 67778888889999999999999999988887743322 35688889999999999999999999999999886432222
Q ss_pred cCCccHHhHHHHHHHHhc-CCCHHHHHHHHHHHH
Q 000827 969 KMTPPIKDLLPRLTPILK-NRHEKVQENCIDLVG 1001 (1265)
Q Consensus 969 ~l~p~l~~Llp~Ll~~L~-~~~~~Vre~ai~~ig 1001 (1265)
. -.+...+..+++ +++..||.+++..|.
T Consensus 161 e-----~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 E-----CPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred c-----ccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 2 234455555555 467999999987664
No 148
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.084 Score=62.28 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=109.7
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccC-CCCchHHHHHHHHHHHHHHHhhhChhhHHHHHHHHHcCC
Q 000827 537 VIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPD-IDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSK 615 (1265)
Q Consensus 537 ~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~-l~~~d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~~l~s~ 615 (1265)
.|..++.|.|+..|..+.-.+..----.|-..+++.+.+. ..+.+.-||++|.-+++-+..- =+.+++-..+.+...
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~--D~~~lv~tvelLs~s 597 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD--DRDLLVGTVELLSES 597 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeecccCchHHHHHHHHheeeeEec--CcchhhHHHHHhhhc
Confidence 4556678889998987654443222112334456666665 6667777999877666644322 234555555555443
Q ss_pred chhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhh
Q 000827 616 KSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGI 695 (1265)
Q Consensus 616 ~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l 695 (1265)
-+...|.+...+||..|...|. +.-+.++..++.|...-||..|+-+++.+...+.++....+..|...+.+.+
T Consensus 598 hN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI 671 (926)
T COG5116 598 HNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVI 671 (926)
T ss_pred cchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHH
Confidence 3488999989999977776663 3456667778889999999999999999998888877777777777777776
Q ss_pred hccchHHHHHH
Q 000827 696 RSHRGKVLAAF 706 (1265)
Q Consensus 696 ~~~~~~~la~~ 706 (1265)
.+....+++.+
T Consensus 672 ~~Khe~glakl 682 (926)
T COG5116 672 VDKHESGLAKL 682 (926)
T ss_pred hhhhHhHHHHH
Confidence 66544444443
No 149
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.71 E-value=5 Score=56.27 Aligned_cols=133 Identities=15% Similarity=0.255 Sum_probs=86.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHH----HHH-HHHHHHHhhC------------------CC---CHH-
Q 000827 897 IKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQL----MGH-LGVVLYEYLG------------------EE---YPE- 949 (1265)
Q Consensus 897 Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~l----l~~-L~~~L~~~L~------------------d~---~~~- 949 (1265)
|..+..|...+||..|+.++=++....+..|...+ +.. |.++ ++.+. +. +..
T Consensus 1352 Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPI-Fd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 1430 (1780)
T PLN03076 1352 LSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPI-FDYVRHAIDPSGGDEPEGQGVDGDQGELDQDA 1430 (1780)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH-HHHHHHhhccccccccccccccccccchhhhh
Confidence 33456689999999999999998887776664332 332 2222 22221 00 011
Q ss_pred -HHHHHHHHHHHHHHHhCc--ccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHH
Q 000827 950 -VLGSILGALKAIVNVIGM--TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEM 1026 (1265)
Q Consensus 950 -V~~~al~aL~~lv~~~g~--~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~ 1026 (1265)
+..++..||..+++-+.. +.+.+.++.++..|....+..|+.+-...+.|+-.+....+..++..+|..++..+.+.
T Consensus 1431 Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~l 1510 (1780)
T PLN03076 1431 WLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEA 1510 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 346666777777765532 12334445555555555567788888889999999998866666777899999888877
Q ss_pred Hhhc
Q 000827 1027 LKAH 1030 (1265)
Q Consensus 1027 Lk~~ 1030 (1265)
++..
T Consensus 1511 f~~T 1514 (1780)
T PLN03076 1511 ANAT 1514 (1780)
T ss_pred HHHh
Confidence 6543
No 150
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=5.5 Score=44.71 Aligned_cols=63 Identities=21% Similarity=0.339 Sum_probs=38.3
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHHHhCcccC-----CccHHhHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhh
Q 000827 940 YEYLGEEYPEVLGSILGALKAIVNVIGMTKM-----TPPIKDLLPRLTPILKNRH-EKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 940 ~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l-----~p~l~~Llp~Ll~~L~~~~-~~Vre~ai~~ig~Ia~~ 1006 (1265)
++...-.+|+..+.++.+++.+........+ .|....++-+.. +++ ..-++.++.++..|+.-
T Consensus 310 fEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllaraf----dqnahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 310 FEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAF----DQNAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred HHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHh----cccccchHHHHHHHHHHhhcc
Confidence 4555667788999999999988765533221 123344444333 222 23467888888888754
No 151
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.45 E-value=7.6 Score=45.85 Aligned_cols=281 Identities=14% Similarity=0.122 Sum_probs=154.8
Q ss_pred hHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcc-----hHHH-HHHHHH---
Q 000827 867 DANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCH-----EEQL-MGHLGV--- 937 (1265)
Q Consensus 867 d~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~-----~~~l-l~~L~~--- 937 (1265)
.|-.+++.|..++..+|. .+-|+-++...|-.++.+..+.|..-++.++-.+...+.... +... ...+-.
T Consensus 271 ~rle~~qvl~~~a~~~~~-~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l 349 (728)
T KOG4535|consen 271 MRLEALQVLTLLARYFSM-TQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMML 349 (728)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHc
Confidence 455667777777777763 245777888888899999999999999999888876554211 0111 111111
Q ss_pred ------HHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhh-CCC
Q 000827 938 ------VLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRH-EKVQENCIDLVGRIADR-GAE 1009 (1265)
Q Consensus 938 ------~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~-~~Vre~ai~~ig~Ia~~-~~~ 1009 (1265)
..|+.++ +....+.|.++..|...-.. .+-.--....+.++.-..++. .-|+.+|+.+++...-+ +.-
T Consensus 350 ~~p~~~~~YDs~~---~Tl~~s~Cdals~i~~~~f~-~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr 425 (728)
T KOG4535|consen 350 NGPLPRALYDSEH---PTLQASACDALSSILPEAFS-NLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLR 425 (728)
T ss_pred cCCChhhhhhhcC---CCchhHHHHHHhhcCchhhc-CCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchh
Confidence 2222222 34677889998888643211 111111244555554444433 44778888888766544 221
Q ss_pred CcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhC---c--H----HH----HHHHHH---hhcccchhhHHHH
Q 000827 1010 FVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIG---P--Q----DV----LATLLN---NLKVQERQNRVCT 1073 (1265)
Q Consensus 1010 ~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iG---p--~----~v----lp~Ll~---~L~~~e~~~R~~~ 1073 (1265)
..-.+ .......++..+.+..-+.|..+..++|.|..++- | . .+ +-.++. ........+|..+
T Consensus 426 ~d~~f-v~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~na 504 (728)
T KOG4535|consen 426 QDVIF-VADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNA 504 (728)
T ss_pred hhHHH-HHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence 11111 11222333445566667788889999999987651 1 1 11 111111 1111222345555
Q ss_pred HHHHHHHHhhcCC-----c-cc----HHHHHhhcCCC-chhHHHHHHHHHHHHHHHhc--hhhhhhHHhHHHHHHHHhcc
Q 000827 1074 TVAIAIVAETCSP-----F-TV----LPALMNEYRVP-ELNVQNGVLKSLSFLFEYIG--EMGKDYIYAVTPLLEDALMD 1140 (1265)
Q Consensus 1074 ~~ai~~l~e~~gp-----~-~v----lPaL~~~~~~~-~~~vq~~vl~al~~l~~~ig--~~~~~yi~~i~PlL~~~l~d 1140 (1265)
..+++-+.....| + .+ +.++......+ ...||.+++.+++.+|.+-- -.-.++...+.|.|...+.+
T Consensus 505 vraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~ 584 (728)
T KOG4535|consen 505 VRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTS 584 (728)
T ss_pred HHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHH
Confidence 5555554443221 0 11 11222221111 23589999999999987531 12234667788888887777
Q ss_pred C-ChhHHHHHHHHH
Q 000827 1141 R-DLVHRQTAASAV 1153 (1265)
Q Consensus 1141 ~-d~~~Rq~A~~~l 1153 (1265)
. +.-+|-.|+.++
T Consensus 585 ~~NFKVRi~AA~aL 598 (728)
T KOG4535|consen 585 CKNFKVRIRAAAAL 598 (728)
T ss_pred hccceEeehhhhhh
Confidence 6 566777777654
No 152
>PF05536 Neurochondrin: Neurochondrin
Probab=95.45 E-value=10 Score=47.39 Aligned_cols=152 Identities=17% Similarity=0.121 Sum_probs=82.2
Q ss_pred HHHHHHHhhhccc-chHHHHHHHHHHHHHHhchhhhchHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhc---c
Q 000827 853 IDGILYAFQEQTS-DDANVMLNGFGAVVNSLGQRVKPYLP-QICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQC---H 927 (1265)
Q Consensus 853 l~~ll~~l~e~~~-ed~~~al~aL~~I~~~lg~~~~p~Lp-~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~---~ 927 (1265)
++.++..+..... +...-++.+|..|+ ....+-+.++. ..++.|...+.+ ++...+.|..++..+....... .
T Consensus 100 IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~ 177 (543)
T PF05536_consen 100 IPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAE 177 (543)
T ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhh
Confidence 3444444433222 22345666666666 22222222222 244555555555 6777888888888877654421 1
Q ss_pred hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcc-----cCCccHHhHHHHHHHHhcCCC-HHHHHHHHHHHH
Q 000827 928 EEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMT-----KMTPPIKDLLPRLTPILKNRH-EKVQENCIDLVG 1001 (1265)
Q Consensus 928 ~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~-----~l~p~l~~Llp~Ll~~L~~~~-~~Vre~ai~~ig 1001 (1265)
+...+..+...+-..........+-.+|.-|..+....... .-..+...+...|..+|+++- ..-|..++.+.+
T Consensus 178 ~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa 257 (543)
T PF05536_consen 178 DSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAA 257 (543)
T ss_pred hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 12223333333322222212223444566666665544211 122467888888999998864 667888889988
Q ss_pred HHHhh
Q 000827 1002 RIADR 1006 (1265)
Q Consensus 1002 ~Ia~~ 1006 (1265)
.+.+.
T Consensus 258 ~Ll~~ 262 (543)
T PF05536_consen 258 SLLDL 262 (543)
T ss_pred HHHHH
Confidence 88877
No 153
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.43 E-value=3.7 Score=55.24 Aligned_cols=264 Identities=16% Similarity=0.193 Sum_probs=133.0
Q ss_pred hhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHH---HhhCCC-CH--HHHHHHHHH
Q 000827 886 VKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCH--EEQLMGHLGVVLY---EYLGEE-YP--EVLGSILGA 957 (1265)
Q Consensus 886 ~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~--~~~ll~~L~~~L~---~~L~d~-~~--~V~~~al~a 957 (1265)
+.|+...++.. ..|+|++-.||.-.+-|++.|-+...+.. .+..|..+...++ ..|+|. .| .=+-.++..
T Consensus 46 ~~pl~~~l~~~--~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~llet 123 (1266)
T KOG1525|consen 46 LLPLADHLIKD--FLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLET 123 (1266)
T ss_pred HHHHHHHHhhH--HHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHH
Confidence 44555555543 45899999999999999999988876632 2234444444433 244543 22 122233333
Q ss_pred HHHHH--HHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHH
Q 000827 958 LKAIV--NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIR 1035 (1265)
Q Consensus 958 L~~lv--~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR 1035 (1265)
|..+. -.+....-...+.++...+..++++.|..--.+-+..++.+.. ..++++. .+|..++..|-.+.++.+
T Consensus 124 l~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~-e~d~v~~----e~L~~ll~~lv~~~~~~~ 198 (1266)
T KOG1525|consen 124 LAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLIT-EEDTVQS----ELLDVLLENLVKPGRDTI 198 (1266)
T ss_pred HHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-hhccchH----HHHHHHHHHhccCCCCcc
Confidence 33332 2222222234556666777777777664433443344333333 2344554 344444444444434444
Q ss_pred HH----HHHHHHHHHHhhCcH--HHHHHHHHhhcccchhhHHHHHHHHHHHHh--hcCC---cccHHHHHhhcCCCchhH
Q 000827 1036 RA----TVNTFGYIAKAIGPQ--DVLATLLNNLKVQERQNRVCTTVAIAIVAE--TCSP---FTVLPALMNEYRVPELNV 1104 (1265)
Q Consensus 1036 ~~----a~~tlg~Ia~~iGp~--~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e--~~gp---~~vlPaL~~~~~~~~~~v 1104 (1265)
.. |-.++-.++..+-+. .++..-|...+..-..++.-. .-++.+ .+.| ..|+|.|.+++......+
T Consensus 199 ~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~---he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~ 275 (1266)
T KOG1525|consen 199 KEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKY---HELILELWRIAPQLLLAVIPQLEFELLSEQEEV 275 (1266)
T ss_pred HHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHH---HHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHH
Confidence 44 444444444433321 222222222221111111111 111111 1222 368999999988877778
Q ss_pred HHHHHHHHHHHHHHhch-hhhhhHHhHHHHHHHHhccCChhHHHHHHHHHHHHHhcc
Q 000827 1105 QNGVLKSLSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGV 1160 (1265)
Q Consensus 1105 q~~vl~al~~l~~~ig~-~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~ 1160 (1265)
|-.+.+.++.||..-+. .+..|- .+.-.....+.|.+..+|-.+....++.-+..
T Consensus 276 Rl~a~~lvg~~~~~~~~~l~~~~~-~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~ 331 (1266)
T KOG1525|consen 276 RLKAVKLVGRMFSDKDSQLSETYD-DLWSAFLGRFNDISVEVRMECVESIKQCLLNN 331 (1266)
T ss_pred HHHHHHHHHHHHhcchhhhcccch-HHHHHHHHHhccCChhhhhhHHHHhHHHHhcC
Confidence 87888888888754322 122222 22223334578888888888877777654443
No 154
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.43 E-value=0.59 Score=51.07 Aligned_cols=190 Identities=18% Similarity=0.162 Sum_probs=106.5
Q ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCccc-
Q 000827 893 ICGTIKWRLNN--KSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTK- 969 (1265)
Q Consensus 893 ilp~Ll~~L~d--~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~- 969 (1265)
-+|+|...|.| ..+.||-.|+.++|.+.. +.+++++-.+..|+..+|++++..|+..+-..-+...
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~ 136 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI 136 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccc
Confidence 45555566665 478999999999998762 1233444455578888999998888888754322111
Q ss_pred --CCccH------H-h--HHHHHHHHhcCCCHH--HHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHH
Q 000827 970 --MTPPI------K-D--LLPRLTPILKNRHEK--VQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRR 1036 (1265)
Q Consensus 970 --l~p~l------~-~--Llp~Ll~~L~~~~~~--Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~ 1036 (1265)
-.||. + . =+..|-..|.+.++. -|..+...+-.+ |++ .-+..|.+.+.++..-.|-
T Consensus 137 ~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~---g~E--------eaI~al~~~l~~~Salfrh 205 (289)
T KOG0567|consen 137 ANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI---GTE--------EAINALIDGLADDSALFRH 205 (289)
T ss_pred cccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc---CcH--------HHHHHHHHhcccchHHHHH
Confidence 12222 1 1 133444444444322 233333333221 221 2334455666666677777
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHhhcc--cchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCchhHHHHHHHHH
Q 000827 1037 ATVNTFGYIAKAIGPQDVLATLLNNLKV--QERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSL 1112 (1265)
Q Consensus 1037 ~a~~tlg~Ia~~iGp~~vlp~Ll~~L~~--~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~vl~al 1112 (1265)
.+.-+||.+- ...-+|.|...|.. .+.-+|+-++.|+|.++.- ..++.|-.-.++++.-|+.++.-+|
T Consensus 206 EvAfVfGQl~----s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----~~~~vL~e~~~D~~~vv~esc~val 275 (289)
T KOG0567|consen 206 EVAFVFGQLQ----SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE----DCVEVLKEYLGDEERVVRESCEVAL 275 (289)
T ss_pred HHHHHHhhcc----chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH----HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 7777777753 23445666555543 3445777777777776542 3355555555666666666544443
No 155
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.42 E-value=20 Score=50.56 Aligned_cols=289 Identities=11% Similarity=0.080 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHhchhhh----chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhc-------chHHHHHHHHHH
Q 000827 870 VMLNGFGAVVNSLGQRVK----PYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQC-------HEEQLMGHLGVV 938 (1265)
Q Consensus 870 ~al~aL~~I~~~lg~~~~----p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~-------~~~~ll~~L~~~ 938 (1265)
..+.-|..|+..--.+++ +.-..+.+.+...-.+++..|+.-|++.|.+++..+-.. |...+|..+..+
T Consensus 1111 FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~i 1190 (1780)
T PLN03076 1111 FSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIV 1190 (1780)
T ss_pred hHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHH
Confidence 444445444443333433 333335555666656777889999999999998643221 224567666655
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcCh---HH
Q 000827 939 LYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPA---RE 1015 (1265)
Q Consensus 939 L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~---~e 1015 (1265)
+. .....+|+.-++.++..++...+. .++.-=+.|+..+....+++++.+-+.+.+++..|.+..-..++. .-
T Consensus 1191 m~---~s~~~eVrE~ILeCv~qmI~s~~~-nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~ 1266 (1780)
T PLN03076 1191 MR---KSNAVEIRELIIRCVSQMVLSRVN-NVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTT 1266 (1780)
T ss_pred HH---hcCchHHHHHHHHHHHHHHHHHHh-hhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhH
Confidence 54 334578999999999999988754 344444677777777777888888888999998887652222221 11
Q ss_pred HHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHhh-----------------------------------CcHH----HH
Q 000827 1016 WMRICFELLEMLKAH-KKGIRRATVNTFGYIAKAI-----------------------------------GPQD----VL 1055 (1265)
Q Consensus 1016 ~~~il~~LL~~Lk~~-~~~iR~~a~~tlg~Ia~~i-----------------------------------Gp~~----vl 1055 (1265)
+..++.-|.+..+.. ..++=..|+..|-.++..+ +..+ -+
T Consensus 1267 F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~ 1346 (1780)
T PLN03076 1267 FTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWF 1346 (1780)
T ss_pred HHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHH
Confidence 122222222222211 1112222333333221111 0000 12
Q ss_pred HHH---HHhhcccchhhHHHHHHHHHHHHhhcCC-c----------ccHHHHHhhcCCC---------------------
Q 000827 1056 ATL---LNNLKVQERQNRVCTTVAIAIVAETCSP-F----------TVLPALMNEYRVP--------------------- 1100 (1265)
Q Consensus 1056 p~L---l~~L~~~e~~~R~~~~~ai~~l~e~~gp-~----------~vlPaL~~~~~~~--------------------- 1100 (1265)
|.| .+-..++...+|.++...+--+....|. | .||..|++.++..
T Consensus 1347 pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~ 1426 (1780)
T PLN03076 1347 PLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGEL 1426 (1780)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccch
Confidence 322 2223345557888877665444444453 2 2555565554210
Q ss_pred c---h--hHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHHHHHHHHHHHhcccC
Q 000827 1101 E---L--NVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAG 1162 (1265)
Q Consensus 1101 ~---~--~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~g 1162 (1265)
+ + ..-.-+|+.+..+|....+.....+..++.+|..++..++...-+.+.+++.++.+..+.
T Consensus 1427 e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1427 DQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 0 0 011134555555554444444446677777778888888888888899999998887764
No 156
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.40 E-value=0.19 Score=52.86 Aligned_cols=173 Identities=19% Similarity=0.179 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHHhhcCChhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCHHH
Q 000827 470 PQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYA 549 (1265)
Q Consensus 470 ~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~V 549 (1265)
.+|..|+.+|..+++....+ .|-.+-+.++-.. +. .-.+..+.|+.. ++.|+++.|
T Consensus 1 kvR~~Al~~L~al~k~~~~r-~l~~yW~~llP~~--~~------------------~~~~~~~sLlt~---il~Dp~~kv 56 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKR-SLFGYWPALLPDS--VL------------------QGRPATPSLLTC---ILKDPSPKV 56 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCc-eeHhhHHHHCCCC--CC------------------cCCCCCcchhHH---HHcCCchhH
Confidence 37999999999999986653 3434444444321 00 001233344443 456999999
Q ss_pred HHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhC--hhhHHHHHHHHHcCCchhHHHHHHHHH
Q 000827 550 RVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALG--IPALLPFLKAVCQSKKSWQARHTGIKI 627 (1265)
Q Consensus 550 R~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg--~~~Llp~L~~~l~s~~s~~~R~aal~~ 627 (1265)
|..|...++.|.+... .++..-. +-+. -...+..++..+| +-++---|...++.+++...--..+++
T Consensus 57 R~aA~~~l~~lL~gsk--~~L~~Ae-~~~~--------~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~ 125 (182)
T PF13251_consen 57 RAAAASALAALLEGSK--PFLAQAE-ESKG--------PSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKC 125 (182)
T ss_pred HHHHHHHHHHHHHccH--HHHHHHH-hcCC--------CCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 9999999998876531 1111000 0000 0112333333333 334444555555555444444456677
Q ss_pred HHHHHHHhCC-Ccc-hhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhC
Q 000827 628 VQQIAILIGC-AVL-PHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAA 677 (1265)
Q Consensus 628 L~~i~~~~g~-~l~-p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~ 677 (1265)
+..++..... .+. ..+..++..+...+.+.+..||.++..+++.+.....
T Consensus 126 la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 126 LAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 7766555443 232 3677888888888888999999999999999876543
No 157
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.22 E-value=0.25 Score=51.26 Aligned_cols=73 Identities=15% Similarity=0.349 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhhcc-cchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 000827 851 LLIDGILYAFQEQT-SDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVM 923 (1265)
Q Consensus 851 ~ll~~ll~~l~e~~-~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l 923 (1265)
-.+..++..+++.+ +.....++.++-.|...+|....|||++++|.++..++......|+....-++.|...+
T Consensus 86 vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~iv 159 (160)
T PF11865_consen 86 VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIV 159 (160)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 34455566665532 23345889999999999999899999999999999999988899998888888777654
No 158
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.20 E-value=0.17 Score=62.00 Aligned_cols=240 Identities=15% Similarity=0.215 Sum_probs=140.0
Q ss_pred CCCCChhhH-HhHHhhcCcCCCCCCChhHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhc--
Q 000827 424 LPFMKPEDY-QYFGALLNEDEEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLM-- 500 (1265)
Q Consensus 424 l~~~~~~d~-~~f~~l~~~~~~~~l~~~~~~~~~i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~-- 500 (1265)
|+.-.++++ +||.-|.. ..+++..+--.-+-+-.|+..+.-|+.. ...+--|-...+.+...++-..++|.++
T Consensus 263 l~lks~~eK~~Ff~~L~~--~l~~~pe~i~~~kvlp~Ll~~~~~g~a~--~~~ltpl~k~~k~ld~~eyq~~i~p~l~kL 338 (690)
T KOG1243|consen 263 LRLKSVEEKQKFFSGLID--RLDNFPEEIIASKVLPILLAALEFGDAA--SDFLTPLFKLGKDLDEEEYQVRIIPVLLKL 338 (690)
T ss_pred cccCcHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHhhccccc--hhhhhHHHHhhhhccccccccchhhhHHHH
Confidence 443334444 45555544 4456655555444444555556666511 2222233333334433333223444443
Q ss_pred -CCCCCHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhchHH-------HHHh
Q 000827 501 -QPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLAT-------MIAA 572 (1265)
Q Consensus 501 -~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~-------~~~~ 572 (1265)
.. .+-+.|..++.-+......+.+. .+-.+|++.+...+.|.+..+|..+..+|..|+...+-.. ....
T Consensus 339 F~~-~Dr~iR~~LL~~i~~~i~~Lt~~--~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar 415 (690)
T KOG1243|consen 339 FKS-PDRQIRLLLLQYIEKYIDHLTKQ--ILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLAR 415 (690)
T ss_pred hcC-cchHHHHHHHHhHHHHhhhcCHH--hhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHh
Confidence 32 24455665555554444444432 3456788999999999999999999999999887764321 1233
Q ss_pred hccCCCCchHHHHHHHHHHHHHHHhhhC---hh--hHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHH
Q 000827 573 MRPDIDNIDEYVRNTTARAFSVVASALG---IP--ALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLV 647 (1265)
Q Consensus 573 L~~~l~~~d~~vR~~aa~~l~~lA~~lg---~~--~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll 647 (1265)
+++ +.+..+|.-+.-|++.++.++. .. -..+|.. .+.++- ...|.+++..+...+... .....-.+|+
T Consensus 416 ~q~---d~~~~irtntticlgki~~~l~~~~R~~vL~~aftr-alkdpf-~paR~a~v~~l~at~~~~--~~~~va~kIl 488 (690)
T KOG1243|consen 416 LQP---DEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTR-ALKDPF-VPARKAGVLALAATQEYF--DQSEVANKIL 488 (690)
T ss_pred hCc---cccCcccccceeeecccccccchhhhccccchhhhh-hhcCCC-CCchhhhhHHHhhccccc--chhhhhhhcc
Confidence 333 2333466656666666666542 11 1223333 355554 558999998887444332 2334556789
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHHHHhC
Q 000827 648 EIIEHGLNDENQKVRTITALSLAALAEAAA 677 (1265)
Q Consensus 648 ~~l~~~L~De~~~VR~~A~~aL~~lae~~~ 677 (1265)
|.+..+..|++..||..|..++-.+.+...
T Consensus 489 p~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 489 PSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred ccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 999999999999999999888877665543
No 159
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=95.14 E-value=0.37 Score=62.23 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHH
Q 000827 870 VMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPE 949 (1265)
Q Consensus 870 ~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~ 949 (1265)
..+..|.++....+..+.| +-+.+|.++.++...+..||.+|+.+++.++..... +.+...+..++..+++-+.-
T Consensus 795 ~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~----e~m~~v~~~~~~ll~~~~~~ 869 (1549)
T KOG0392|consen 795 SSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATR----ETMATVINGFLPLLGDLDKF 869 (1549)
T ss_pred hhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccchhhH
Confidence 4556666666677778888 778889999999999999999999999999876542 34445555555566766666
Q ss_pred HHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000827 950 VLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 950 V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~ 1006 (1265)
++......+-.++...+...+.||..-+++-|+..+.+....||.++-.+|..+...
T Consensus 870 ~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~ 926 (1549)
T KOG0392|consen 870 VRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPL 926 (1549)
T ss_pred hhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcc
Confidence 665555555555555667778899999999999999999999999999999998765
No 160
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=1 Score=50.20 Aligned_cols=92 Identities=14% Similarity=0.110 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccH----HhHHHHHHHHhcC
Q 000827 912 AADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPI----KDLLPRLTPILKN 987 (1265)
Q Consensus 912 A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l----~~Llp~Ll~~L~~ 987 (1265)
+..++-|+-+.+.. ..+.+++.+.|...|.-++..|..-+|..++.+++.+....++..+ .+|++.++..+.+
T Consensus 63 cVscLERLfkakeg---ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg 139 (524)
T KOG4413|consen 63 CVSCLERLFKAKEG---AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG 139 (524)
T ss_pred HHHHHHHHHhhccc---hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC
Confidence 45556665554432 3356777777777777777888888999999998877644433222 4788999999999
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 000827 988 RHEKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 988 ~~~~Vre~ai~~ig~Ia~~ 1006 (1265)
.+..|-.+|++.|.+|+..
T Consensus 140 eddeVAkAAiesikrialf 158 (524)
T KOG4413|consen 140 EDDEVAKAAIESIKRIALF 158 (524)
T ss_pred CcHHHHHHHHHHHHHHHhc
Confidence 9999999999999999875
No 161
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.10 E-value=1.2 Score=51.80 Aligned_cols=142 Identities=17% Similarity=0.191 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHhhhcccchH-HHHHHHHHHHHHHhchhhhchHHHHHHHHHHH----hcC---CCHHHHHHHHHHHHH
Q 000827 847 RLEELLIDGILYAFQEQTSDDA-NVMLNGFGAVVNSLGQRVKPYLPQICGTIKWR----LNN---KSAKVRQQAADLISR 918 (1265)
Q Consensus 847 ~~~~~ll~~ll~~l~e~~~ed~-~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~----L~d---~~~~VR~~A~~~lg~ 918 (1265)
.+.+++++.++..+++..++-| ..++..++++++.++..+.++++.|+..++.+ +++ ..|+.|..-..+|..
T Consensus 67 ~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~ 146 (319)
T PF08767_consen 67 NFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRA 146 (319)
T ss_dssp HTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHH
Confidence 3445566666666655333323 35888999999999998889999887666543 432 469999999999998
Q ss_pred HHHHHhhc---chHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCc-------ccCCccHHhHHHHHHHHhcCC
Q 000827 919 IAVVMKQC---HEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM-------TKMTPPIKDLLPRLTPILKNR 988 (1265)
Q Consensus 919 La~~l~~~---~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~-------~~l~p~l~~Llp~Ll~~L~~~ 988 (1265)
+....-.. ..+..+..++..+.+..+....+|...++.+|.++++.+.. ..++.|.-.++..++.++.|.
T Consensus 147 i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~ 226 (319)
T PF08767_consen 147 INEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDS 226 (319)
T ss_dssp HHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 88753221 12456677788888888999999999999999999988754 234455556666666666664
No 162
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.07 E-value=1.1 Score=53.63 Aligned_cols=162 Identities=17% Similarity=0.318 Sum_probs=96.0
Q ss_pred CCHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhcCCC-C----CH-HHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHh
Q 000827 467 GTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPT-L----ED-QERHLLVKVIDRVLYKLDELVRPYVHKILVVIEP 540 (1265)
Q Consensus 467 ~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~~~-l----ed-~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~ 540 (1265)
+++..|..|+..|.. +-|...++..|+-++++.. . .+ +-=+.+++++-.++......+.||+|.|++.|..
T Consensus 219 ~~~~~r~eAL~sL~T---DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlT 295 (576)
T KOG2549|consen 219 SDEPLRQEALQSLET---DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLT 295 (576)
T ss_pred CCHHHHHHHHHhhcc---CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHH
Confidence 788899999888754 5555455555555555431 1 11 2233555667666666666788999999998877
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhC------hhhHHHHHHHHH-c
Q 000827 541 LLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALG------IPALLPFLKAVC-Q 613 (1265)
Q Consensus 541 lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg------~~~Llp~L~~~l-~ 613 (1265)
++-.. .++ ++|. .+....+|..+|+.++.|...++ -+-+.-+|...+ .
T Consensus 296 CvVsk-----------------~l~-------~~p~-~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D 350 (576)
T KOG2549|consen 296 CVVSK-----------------NLC-------LRPE-LDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLD 350 (576)
T ss_pred hhhhh-----------------hcc-------CCcc-ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC
Confidence 54321 111 1221 12233366666666666655544 233444444444 3
Q ss_pred CCchhHHHHHHHHHHHHHHHH-hCCCcchhHHHHHHHHHhhcCC
Q 000827 614 SKKSWQARHTGIKIVQQIAIL-IGCAVLPHLRSLVEIIEHGLND 656 (1265)
Q Consensus 614 s~~s~~~R~aal~~L~~i~~~-~g~~l~p~L~~ll~~l~~~L~D 656 (1265)
..+.|...++++..|..+.-. ....+.|+|......+...+..
T Consensus 351 ~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~ 394 (576)
T KOG2549|consen 351 NKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDV 394 (576)
T ss_pred CCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhccc
Confidence 445688888888887755432 2225678888877777766554
No 163
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.95 E-value=0.71 Score=57.10 Aligned_cols=171 Identities=19% Similarity=0.172 Sum_probs=112.0
Q ss_pred ccHHhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhh-CCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhh
Q 000827 972 PPIKDLLPRLTPILKNR-HEKVQENCIDLVGRIADR-GAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAI 1049 (1265)
Q Consensus 972 p~l~~Llp~Ll~~L~~~-~~~Vre~ai~~ig~Ia~~-~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~i 1049 (1265)
.|...++|.|.++++.. ...+..-.++=+-.|.+. ..+++ ...|++-|...+++....+...++..+..+++.+
T Consensus 345 ~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~----~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~i 420 (700)
T KOG2137|consen 345 EFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEV----KEKILPLLYRSLEDSDVQIQELALQILPTVAESI 420 (700)
T ss_pred hhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHH----HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhc
Confidence 46678899999998853 344444444555556655 33332 3467887888889999999999999999999988
Q ss_pred CcH----HHHHHHHHh-hcccchhhHHHHHHHHHHHHhhcCCcccHH---HHHhhcCCCchhHHHHHHHHHHHHHHHhch
Q 000827 1050 GPQ----DVLATLLNN-LKVQERQNRVCTTVAIAIVAETCSPFTVLP---ALMNEYRVPELNVQNGVLKSLSFLFEYIGE 1121 (1265)
Q Consensus 1050 Gp~----~vlp~Ll~~-L~~~e~~~R~~~~~ai~~l~e~~gp~~vlP---aL~~~~~~~~~~vq~~vl~al~~l~~~ig~ 1121 (1265)
.-. .++|.|.+- ++.....++++++.|++.+.+.|-.+.|++ .++.++++.+..+-.+.+.....++-.+..
T Consensus 421 D~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 421 DVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred cHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 643 467777553 455566788999999999998887765554 566777777666665555544443322211
Q ss_pred hhhhh-HHhHHHHHHHHhccCChhHHH
Q 000827 1122 MGKDY-IYAVTPLLEDALMDRDLVHRQ 1147 (1265)
Q Consensus 1122 ~~~~y-i~~i~PlL~~~l~d~d~~~Rq 1147 (1265)
+.++ .+.++|++.-..+..-+...|
T Consensus 501 -g~ev~~~~VlPlli~ls~~~~L~~~Q 526 (700)
T KOG2137|consen 501 -GVEVMAENVLPLLIPLSVAPSLNGEQ 526 (700)
T ss_pred -ceeeehhhhhhhhhhhhhcccccHHH
Confidence 1222 356777776655444444444
No 164
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=94.92 E-value=0.52 Score=52.64 Aligned_cols=148 Identities=17% Similarity=0.190 Sum_probs=91.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH-HHHHhhC-CCCHHHHHHHHHHHHHHHHHhCcccC
Q 000827 893 ICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGV-VLYEYLG-EEYPEVLGSILGALKAIVNVIGMTKM 970 (1265)
Q Consensus 893 ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~-~L~~~L~-d~~~~V~~~al~aL~~lv~~~g~~~l 970 (1265)
.++.|...|+++++.||..|.+++..++....... .+...++ ++-+... ..+.+++.+++.+|.++.-. ...
T Consensus 55 gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~---~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~---~~~ 128 (254)
T PF04826_consen 55 GISLIGSLLNDPNPSVREKALNALNNLSVNDENQE---QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT---NDY 128 (254)
T ss_pred CHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH---HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC---cch
Confidence 66888899999999999999999998876433211 1122222 2222222 23567888888888888532 222
Q ss_pred CccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---CCCcChHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHH
Q 000827 971 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG---AEFVPAREWMRICFELLEMLKAH-KKGIRRATVNTFGYIA 1046 (1265)
Q Consensus 971 ~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~---~~~~~~~e~~~il~~LL~~Lk~~-~~~iR~~a~~tlg~Ia 1046 (1265)
...+...+|.++.+|...+..+|..++.++..++... .+.+.. +.+..|+..+... .+++...++.-|..|.
T Consensus 129 ~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~----q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~ 204 (254)
T PF04826_consen 129 HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSA----QVLSSFLSLFNSSESKENLLRVLTFFENIN 204 (254)
T ss_pred hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhc----cchhHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 3334556777888888889999999999999998762 122221 2233444444443 3444455555555554
Q ss_pred HhhC
Q 000827 1047 KAIG 1050 (1265)
Q Consensus 1047 ~~iG 1050 (1265)
+.++
T Consensus 205 ~~~~ 208 (254)
T PF04826_consen 205 ENIK 208 (254)
T ss_pred HhhC
Confidence 4443
No 165
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.92 E-value=0.39 Score=60.91 Aligned_cols=191 Identities=17% Similarity=0.181 Sum_probs=114.7
Q ss_pred HHHHhcChhhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHH--HHHHhhh----c--ccchHHH
Q 000827 799 EIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDG--ILYAFQE----Q--TSDDANV 870 (1265)
Q Consensus 799 ~la~~~g~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~--ll~~l~e----~--~~ed~~~ 870 (1265)
.+|..+| |++.+++.|.....++|.-.+=...+|+.....|.. .|+.. -.|.++- + ..+.|..
T Consensus 506 ~LaLsVG---IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~------dLvKe~g~~YF~~vL~~~~~~~~Eqrtm 576 (1387)
T KOG1517|consen 506 DLALSVG---IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA------DLVKENGYKYFLQVLDPSQAIPPEQRTM 576 (1387)
T ss_pred hhhhccc---hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH------HHHhccCceeEEEEecCcCCCCHHHHHH
Confidence 3455555 577778888877778888777667777766554431 12211 1111111 1 1245666
Q ss_pred HHHHHHHHHHHhchhhhchH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH------HHhhcchHHHHHHHHHHHHHh
Q 000827 871 MLNGFGAVVNSLGQRVKPYL-PQICGTIKWRLNN-KSAKVRQQAADLISRIAV------VMKQCHEEQLMGHLGVVLYEY 942 (1265)
Q Consensus 871 al~aL~~I~~~lg~~~~p~L-p~ilp~Ll~~L~d-~~~~VR~~A~~~lg~La~------~l~~~~~~~ll~~L~~~L~~~ 942 (1265)
+.-.|..|+.+....=+..| ..++...+..|+| +++..|+-.|-+||+|-+ |++... .-...|+..
T Consensus 577 aAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~------~AhekL~~~ 650 (1387)
T KOG1517|consen 577 AAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRD------NAHEKLILL 650 (1387)
T ss_pred HHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccc------cHHHHHHHH
Confidence 77778888886543212222 3466667789999 589999999999999875 333211 011224455
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHhCcccCC----------------ccHHhHHH----HHHHHhcCCCHHHHHHHHHHHHH
Q 000827 943 LGEEYPEVLGSILGALKAIVNVIGMTKMT----------------PPIKDLLP----RLTPILKNRHEKVQENCIDLVGR 1002 (1265)
Q Consensus 943 L~d~~~~V~~~al~aL~~lv~~~g~~~l~----------------p~l~~Llp----~Ll~~L~~~~~~Vre~ai~~ig~ 1002 (1265)
|.|+.|+||.+++-||+.++..... .|. --++.+++ .++..+++...-||....-++..
T Consensus 651 LsD~vpEVRaAAVFALgtfl~~~~d-~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~ 729 (1387)
T KOG1517|consen 651 LSDPVPEVRAAAVFALGTFLSNGSD-NFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSH 729 (1387)
T ss_pred hcCccHHHHHHHHHHHHHHhccccc-ccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHH
Confidence 6899999999999999999986411 111 11223333 45555666666666666666655
Q ss_pred HHh
Q 000827 1003 IAD 1005 (1265)
Q Consensus 1003 Ia~ 1005 (1265)
++.
T Consensus 730 ~~~ 732 (1387)
T KOG1517|consen 730 FVV 732 (1387)
T ss_pred HHH
Confidence 544
No 166
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=94.83 E-value=17 Score=46.53 Aligned_cols=206 Identities=16% Similarity=0.147 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh----h--------cchHHHHHHH
Q 000827 868 ANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMK----Q--------CHEEQLMGHL 935 (1265)
Q Consensus 868 ~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~----~--------~~~~~ll~~L 935 (1265)
+..++..+..+..++=.+-.|--..+.-.++.+|+++ .+-..++++++-+..-.. . -+.+.++..+
T Consensus 791 s~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~i 868 (1030)
T KOG1967|consen 791 SEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDI 868 (1030)
T ss_pred hhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhh
Confidence 4566666666666554433344444555666777774 355566676666553111 1 1123456677
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHH
Q 000827 936 GVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPARE 1015 (1265)
Q Consensus 936 ~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e 1015 (1265)
.|++.....-....++..-+.+|..++..+-.+.+.|.++.|+|.|++.|.-.+-.||..+..+|..+....+...+.+
T Consensus 869 vP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~- 947 (1030)
T KOG1967|consen 869 VPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEH- 947 (1030)
T ss_pred HHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHH-
Confidence 7777766664445678888999999999887788899999999999999999999999999999998877655444433
Q ss_pred HHHHHHHHHHHHhhch---HHHHHHHHHHHHHHHHhhCc-------HHHHHHHHHhhcccchhhHHHHHHH
Q 000827 1016 WMRICFELLEMLKAHK---KGIRRATVNTFGYIAKAIGP-------QDVLATLLNNLKVQERQNRVCTTVA 1076 (1265)
Q Consensus 1016 ~~~il~~LL~~Lk~~~---~~iR~~a~~tlg~Ia~~iGp-------~~vlp~Ll~~L~~~e~~~R~~~~~a 1076 (1265)
+..+++.++..-++++ -.+|..|.+|++.+.+.... ..|+.+|...|.++.|-+|.-+.-+
T Consensus 948 ~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 948 LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 5566777775444443 67999999999999985432 2577888888888888887655444
No 167
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.78 E-value=1.7 Score=52.35 Aligned_cols=229 Identities=15% Similarity=0.213 Sum_probs=130.0
Q ss_pred hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 000827 724 YYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANK 803 (1265)
Q Consensus 724 ~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~ 803 (1265)
+.....+..|+..+.++|..-|..+..++-.+.+.......+++..+...|.+ |. ........+..+++.++.+.+.
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~-fi--~e~~~~~gI~elLeil~sii~g 205 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYR-FI--YETERHNGIAELLEILGSIING 205 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH-HH--HTTS--STHHHHHHHHHHHHTT
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-Hh--cCcccccCHHHHHHHHHHHHhc
Confidence 33456778889999999998888777777665543211122333222222221 11 1111122455667777776664
Q ss_pred cChh------hhH-HHHHHHhcCC-ChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchH-HHHHHH
Q 000827 804 VGVA------DIV-GRIVEDLKDE-SEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDA-NVMLNG 874 (1265)
Q Consensus 804 ~g~~------~il-~~i~~~l~d~-~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~-~~al~a 874 (1265)
...+ ..+ ..++...+.. ...|.+....++...+... ..+...++.+++..+--. +..+ ...+.-
T Consensus 206 f~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd------p~l~~~~i~~llk~WP~t-~s~Kev~FL~e 278 (409)
T PF01603_consen 206 FAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD------PSLAEPVIKGLLKHWPKT-NSQKEVLFLNE 278 (409)
T ss_dssp --SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-------GGGHHHHHHHHHHHS-SS--HHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC------chhHHHHHHHHHHhCCCC-CchhHHHHHHH
Confidence 4321 122 2222223332 3346667666666665542 455667777777766321 1112 246666
Q ss_pred HHHHHHHhc-hhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHHHHhhcchHHHHHHHHHHHHHhhC-CCCHHH
Q 000827 875 FGAVVNSLG-QRVKPYLPQICGTIKWRLNNKSAKVRQQAADLIS--RIAVVMKQCHEEQLMGHLGVVLYEYLG-EEYPEV 950 (1265)
Q Consensus 875 L~~I~~~lg-~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg--~La~~l~~~~~~~ll~~L~~~L~~~L~-d~~~~V 950 (1265)
+..+++.+. ..+......++..|-.+++.+|..|-+.|+..+. .+...+.... ..+++.+.+.|+.... --+..|
T Consensus 279 l~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~-~~i~p~i~~~L~~~~~~HWn~~V 357 (409)
T PF01603_consen 279 LEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNS-RVILPIIFPALYRNSKNHWNQTV 357 (409)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTH-HHHHHHHHHHHSSTTSS-SSTTH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHhhHHH
Confidence 777777666 5688888999999999999999999999987654 2344443322 4466666666655333 225678
Q ss_pred HHHHHHHHHHHHH
Q 000827 951 LGSILGALKAIVN 963 (1265)
Q Consensus 951 ~~~al~aL~~lv~ 963 (1265)
+..++.++..+.+
T Consensus 358 r~~a~~vl~~l~~ 370 (409)
T PF01603_consen 358 RNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 8888887777764
No 168
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.71 E-value=1.3 Score=53.02 Aligned_cols=161 Identities=20% Similarity=0.199 Sum_probs=97.2
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccch----HHHHHHHHHHHHHHhc----h
Q 000827 813 IVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDD----ANVMLNGFGAVVNSLG----Q 884 (1265)
Q Consensus 813 i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed----~~~al~aL~~I~~~lg----~ 884 (1265)
|...+...++..|+.|++++. .+ .-..++++.+...+.+...-+ --..+..|..++..|- .
T Consensus 212 It~a~~g~~~~~r~eAL~sL~-------TD----sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSLE-------TD----SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhhc-------cC----ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 333444567788888887653 11 113366777777776532211 1234444445555443 4
Q ss_pred hhhchHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCC--CHHHHH
Q 000827 885 RVKPYLPQICGTIKWRL----------NNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEE--YPEVLG 952 (1265)
Q Consensus 885 ~~~p~Lp~ilp~Ll~~L----------~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~--~~~V~~ 952 (1265)
.+.|||-+++|.++.|+ .|.||.+|.-|+.++..|+..+.... ..+-..+...+...+-|. .....-
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y-~~L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLY-NNLQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHhcCCCCCchhhh
Confidence 67999999999999885 36799999999999999998776543 234445555555544443 233444
Q ss_pred HHHHHHHHHHHHhCcccCCccHHhHHHHHHHHh
Q 000827 953 SILGALKAIVNVIGMTKMTPPIKDLLPRLTPIL 985 (1265)
Q Consensus 953 ~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L 985 (1265)
.++.+|.++....-..++.|.++.....+-..+
T Consensus 360 Gai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l 392 (576)
T KOG2549|consen 360 GAIAGLSELGHEVIRTVILPNLKEYNERLQSVL 392 (576)
T ss_pred hHHHHHHHhhhhhhhheeccchHHHHHHhhhhc
Confidence 556666666554334455566666655554443
No 169
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=0.3 Score=54.46 Aligned_cols=145 Identities=12% Similarity=0.161 Sum_probs=102.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHh
Q 000827 897 IKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKD 976 (1265)
Q Consensus 897 Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~ 976 (1265)
.+..|.+.+|.+.--+...|.+|+....... ...|..++..+...+...-..|...+|.+++.|...++... ..-++.
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l-~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i-~~~ld~ 170 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESL-NPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI-DQELDD 170 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3467888899998888888888887644222 23455566666777777777899999999999998875432 224455
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhC
Q 000827 977 LLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIG 1050 (1265)
Q Consensus 977 Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iG 1050 (1265)
++-.|+..-...+.-||+.|-.++-.+..... +. .++..|+..++.....+|..+..|+......+|
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt----p~---~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVT----PQ---KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccC----hH---HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 55555544444566788988888888877622 21 567777777788888888888888877766666
No 170
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=19 Score=45.86 Aligned_cols=115 Identities=11% Similarity=0.098 Sum_probs=72.5
Q ss_pred ChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHH
Q 000827 821 SEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWR 900 (1265)
Q Consensus 821 ~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~ 900 (1265)
++.+-+.+..+++.+..-++..- ......++.++.++. .++....++..+.++|+-|..++.||+.+++...-..
T Consensus 522 n~ql~~Tss~~igs~s~~l~e~P---~~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~ 596 (982)
T KOG2022|consen 522 NPQLLSTSSDLIGSLSNWLGEHP---MYLNPSLPLLFQGLH--NSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEV 596 (982)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCC---cccCchHHHHHHHhc--CchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHH
Confidence 44455555555555554444432 122234455555553 2334456788899999999999999999999887777
Q ss_pred hcC--CCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 000827 901 LNN--KSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLY 940 (1265)
Q Consensus 901 L~d--~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~ 940 (1265)
++- -...+|......||-+...+++..-...+..|+..++
T Consensus 597 l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il 638 (982)
T KOG2022|consen 597 LNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPIL 638 (982)
T ss_pred hcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHH
Confidence 764 3567888889999988887764222233444444333
No 171
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.50 E-value=3.9 Score=46.70 Aligned_cols=93 Identities=18% Similarity=0.215 Sum_probs=62.5
Q ss_pred HHHHHHHH-Hhc-hhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcc----h-HHHHHHHHHHHHHhhC-
Q 000827 873 NGFGAVVN-SLG-QRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCH----E-EQLMGHLGVVLYEYLG- 944 (1265)
Q Consensus 873 ~aL~~I~~-~lg-~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~----~-~~ll~~L~~~L~~~L~- 944 (1265)
..+.-++. .++ ..+..+++-++|.++.+++|..+.+|..++.++..+...+.... . ..+...+...+...+-
T Consensus 98 ~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~ 177 (282)
T PF10521_consen 98 HVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYY 177 (282)
T ss_pred HHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhc
Confidence 44555555 555 46778999999999999999999999999999999987544322 0 0112222222222222
Q ss_pred -------CCCHHHHHHHHHHHHHHHHHh
Q 000827 945 -------EEYPEVLGSILGALKAIVNVI 965 (1265)
Q Consensus 945 -------d~~~~V~~~al~aL~~lv~~~ 965 (1265)
++...+...+..||..++...
T Consensus 178 LP~~tp~~~s~~Ll~~ay~~L~~L~~~~ 205 (282)
T PF10521_consen 178 LPPITPEDESLELLQAAYPALLSLLKTQ 205 (282)
T ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHhh
Confidence 455677888888888887754
No 172
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.28 E-value=15 Score=43.65 Aligned_cols=200 Identities=17% Similarity=0.204 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHhhC---CCCcChHHHHHHH
Q 000827 949 EVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-----HEKVQENCIDLVGRIADRG---AEFVPAREWMRIC 1020 (1265)
Q Consensus 949 ~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~-----~~~Vre~ai~~ig~Ia~~~---~~~~~~~e~~~il 1020 (1265)
.|+..+|..+.-.++..+ +.+.+|++.++..+..+|..- ...+-..|+..++.+++.. .-|...-.+..||
T Consensus 111 kvK~~i~~~~~ly~~kY~-e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYE-EEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence 467778888888877763 457788888888888887542 2445667788888777652 1222211223343
Q ss_pred HHHH-HH----------Hhh-------------chHHHHHHHHHHHHHHHHhhCcHH--H----HHHHHHhhcc---cch
Q 000827 1021 FELL-EM----------LKA-------------HKKGIRRATVNTFGYIAKAIGPQD--V----LATLLNNLKV---QER 1067 (1265)
Q Consensus 1021 ~~LL-~~----------Lk~-------------~~~~iR~~a~~tlg~Ia~~iGp~~--v----lp~Ll~~L~~---~e~ 1067 (1265)
..++ -+ ..+ +...-|++|.+.+-.+++..+.+. + +..+++.+.. .+.
T Consensus 190 e~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w 269 (370)
T PF08506_consen 190 EKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNW 269 (370)
T ss_dssp HHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-H
T ss_pred HHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccH
Confidence 3221 11 111 124567889999999988765431 2 2223332221 222
Q ss_pred hhHHHHHHHHHHHHhhc-----CC--------------cccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhHH
Q 000827 1068 QNRVCTTVAIAIVAETC-----SP--------------FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIY 1128 (1265)
Q Consensus 1068 ~~R~~~~~ai~~l~e~~-----gp--------------~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~ 1128 (1265)
..+-++...++.++... |- ..|+|-|. .-.....-++-.++|.+.. |. ....+..+.
T Consensus 270 ~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~-Fr--~~l~~~~l~ 345 (370)
T PF08506_consen 270 RSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYT-FR--NQLPKEQLL 345 (370)
T ss_dssp HHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHH-HG--GGS-HHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHH-HH--hhCCHHHHH
Confidence 34455555555555332 10 13455554 1111112345556665543 22 345566788
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHH
Q 000827 1129 AVTPLLEDALMDRDLVHRQTAASAV 1153 (1265)
Q Consensus 1129 ~i~PlL~~~l~d~d~~~Rq~A~~~l 1153 (1265)
.++|.+...|.+.+.+|+..|+.++
T Consensus 346 ~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 346 QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 8999999999999999988887653
No 173
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.22 E-value=3 Score=47.86 Aligned_cols=173 Identities=14% Similarity=0.154 Sum_probs=121.4
Q ss_pred hhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHh
Q 000827 822 EPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRL 901 (1265)
Q Consensus 822 ~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L 901 (1265)
..|.+.++++...|...+|.+... +......+++++.++-.+..++...+.-+....--+|..+.|.++.++..|++.|
T Consensus 69 sGVH~KaLevY~~IF~~ig~~~L~-~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGL 147 (307)
T PF04118_consen 69 SGVHQKALEVYEYIFERIGPDGLA-QDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGL 147 (307)
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHH-hhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccc
Confidence 358888999888888888765422 2223456777777765455666677777777777888889999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhC-----------cccC
Q 000827 902 NNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG-----------MTKM 970 (1265)
Q Consensus 902 ~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g-----------~~~l 970 (1265)
.|...++-+.+..++-.+...++.. .+.+.+-..+. ..|++|..++.=+..-..... ...+
T Consensus 148 ede~sE~~~~~~~ll~~l~~~v~~~---~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~ 219 (307)
T PF04118_consen 148 EDEGSEFFDRTLKLLDKLKEAVGDK---YFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCL 219 (307)
T ss_pred ccCCchHHHHHHHHHHHHHHhcChh---HHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccccchHHHHHhc
Confidence 9999999999999999998877642 34455444443 346666655544333322221 1123
Q ss_pred CccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000827 971 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRI 1003 (1265)
Q Consensus 971 ~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~I 1003 (1265)
.|-..-++..+...|.|.+--|++.+++.+-.-
T Consensus 220 ~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~ 252 (307)
T PF04118_consen 220 GPDPGLLVRALCACLEDENILVQRGFLDLLLSH 252 (307)
T ss_pred CCCccHHHHHHHHHhCCchHHHHHHHHHHHHHh
Confidence 444556778888999999999999998887543
No 174
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.11 E-value=33 Score=50.35 Aligned_cols=142 Identities=18% Similarity=0.224 Sum_probs=86.1
Q ss_pred HHHhhccCCCCchHHHHHHHHHHHHHHHhh----hC----------hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Q 000827 569 MIAAMRPDIDNIDEYVRNTTARAFSVVASA----LG----------IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAIL 634 (1265)
Q Consensus 569 ~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~----lg----------~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~ 634 (1265)
++.+|...+.+.+..++....+++..+-.. +| ...+++-+.++|.++. |+.|.+|+..|+.+++.
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~-wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDST-WYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHh-HHHHcCCCceeeeehhh
Confidence 456666666677777888777888776544 33 5678888888999876 99999999988877666
Q ss_pred hCC-CcchhHHHHHHHHHhhcCCCChhhHH----HHHHHHHHHHHHh------CccchhhhHHhHHHHHHhhhccchHHH
Q 000827 635 IGC-AVLPHLRSLVEIIEHGLNDENQKVRT----ITALSLAALAEAA------APYGIESFDSVLKPLWKGIRSHRGKVL 703 (1265)
Q Consensus 635 ~g~-~l~p~L~~ll~~l~~~L~De~~~VR~----~A~~aL~~lae~~------~p~~~~~~~~iL~~L~~~l~~~~~~~l 703 (1265)
+.. .+..+.-.++..+..-+.|-..++-. .+-..+-.+...+ ..+....+..++.++...+.+++..+.
T Consensus 1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 652 22345556666666666662222211 2222222222111 112234456778888888887776544
Q ss_pred HHHHHHHh
Q 000827 704 AAFLKAIG 711 (1265)
Q Consensus 704 a~~l~a~~ 711 (1265)
....+.+.
T Consensus 1144 ~~~~~~L~ 1151 (3550)
T KOG0889|consen 1144 EFSQKLLR 1151 (3550)
T ss_pred HHHHHHHH
Confidence 44444333
No 175
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.05 E-value=19 Score=43.79 Aligned_cols=171 Identities=14% Similarity=0.141 Sum_probs=99.1
Q ss_pred hhHHHHhHHhcCCC--CCHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhchH
Q 000827 490 PLFNRILPLLMQPT--LEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLA 567 (1265)
Q Consensus 490 ~~~~~iLp~l~~~~--led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~ 567 (1265)
.++..++..+.... .+-.-|.....++..+....+..=.-..+-|+.-+..-+-|.++.||.+|..+|+.+-+-.+-+
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 45555555554321 2334566666666655544443222345566667777777999999999999998876544321
Q ss_pred -HHH-HhhccCC-CCchHHHHHHHHHHHHHHHhhhChhhHHHHHHHHHcCCchhHHHH-HHHHHHHHHHHHhCCCcchhH
Q 000827 568 -TMI-AAMRPDI-DNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARH-TGIKIVQQIAILIGCAVLPHL 643 (1265)
Q Consensus 568 -~~~-~~L~~~l-~~~d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~~l~s~~s~~~R~-aal~~L~~i~~~~g~~l~p~L 643 (1265)
..+ ..+...+ .+|...||+.+---|. -=+...|++.+.+.+-+ -..|+ ..-.+|-.|...---.+.+++
T Consensus 167 en~~~n~l~~~vqnDPS~EVRr~allni~------vdnsT~p~IlERarDv~-~anRr~vY~r~Lp~iGd~~~lsi~kri 239 (885)
T COG5218 167 ENRIVNLLKDIVQNDPSDEVRRLALLNIS------VDNSTYPCILERARDVS-GANRRMVYERCLPRIGDLKSLSIDKRI 239 (885)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHee------eCCCcchhHHHHhhhhh-HHHHHHHHHHHhhhhcchhhcccccee
Confidence 111 1222212 2566778885442222 13577899988887755 33343 233334333222111344443
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 000827 644 RSLVEIIEHGLNDENQKVRTITALSLAA 671 (1265)
Q Consensus 644 ~~ll~~l~~~L~De~~~VR~~A~~aL~~ 671 (1265)
- ++.-++.|.+..||.+++.+++.
T Consensus 240 ~----l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 240 L----LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred h----hhhhcchhhhhhHHHHHHHHHHH
Confidence 3 67889999999999999888753
No 176
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=93.98 E-value=2 Score=50.83 Aligned_cols=206 Identities=11% Similarity=0.166 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHHH--hhcc-hHHHHHHHHH-HH
Q 000827 869 NVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNK-----SAKVRQQAADLISRIAVVM--KQCH-EEQLMGHLGV-VL 939 (1265)
Q Consensus 869 ~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~-----~~~VR~~A~~~lg~La~~l--~~~~-~~~ll~~L~~-~L 939 (1265)
..++..+.-.++.-++.|.+|++.++..+..+|..- ...+-..|+..|+.++... +.-+ .+..|..++. ++
T Consensus 114 ~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI 193 (370)
T PF08506_consen 114 AWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVI 193 (370)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhc
Confidence 345555555555566677788888877777766432 2233344555555444321 1111 1223333322 11
Q ss_pred HHh----------------------hC-CCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHh---cCCCHHHH
Q 000827 940 YEY----------------------LG-EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPIL---KNRHEKVQ 993 (1265)
Q Consensus 940 ~~~----------------------L~-d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L---~~~~~~Vr 993 (1265)
++. ++ .+....|.+|+.-|..+++..+.. +.+.+...+..++.-. .+.+++-+
T Consensus 194 ~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~-v~~i~~~~i~~~l~~y~~~~~~~w~~K 272 (370)
T PF08506_consen 194 FPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQ-VTSILMQYIQQLLQQYASNPSNNWRSK 272 (370)
T ss_dssp HHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-TTT-HHHH
T ss_pred cCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhhCCcccHHHH
Confidence 111 11 122346788999999998876432 2222222222222211 13568899
Q ss_pred HHHHHHHHHHHhhCCC------CcChH-HH-----HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcH---HHHHHH
Q 000827 994 ENCIDLVGRIADRGAE------FVPAR-EW-----MRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQ---DVLATL 1058 (1265)
Q Consensus 994 e~ai~~ig~Ia~~~~~------~~~~~-e~-----~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~---~vlp~L 1058 (1265)
..|+.+++.|+..+.. ..+.. .+ ..++++|. .-.+..+-+|..|++.+..-...+.++ .++|.+
T Consensus 273 D~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l 351 (370)
T PF08506_consen 273 DGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLL 351 (370)
T ss_dssp HHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 9999999999976421 11110 12 22333332 111235668888888887777666654 477888
Q ss_pred HHhhcccchhhHHHHHHH
Q 000827 1059 LNNLKVQERQNRVCTTVA 1076 (1265)
Q Consensus 1059 l~~L~~~e~~~R~~~~~a 1076 (1265)
++.|+.++.-++.-++.|
T Consensus 352 ~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 352 VNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHTTSS-HHHHHHHHHH
T ss_pred HHHhCCCCcchhhhhhhh
Confidence 888888777666555554
No 177
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.97 E-value=0.48 Score=55.57 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=73.9
Q ss_pred HhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcc---cc-hH---HHHHHHHHHHHHHhchhhhc
Q 000827 816 DLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQT---SD-DA---NVMLNGFGAVVNSLGQRVKP 888 (1265)
Q Consensus 816 ~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~---~e-d~---~~al~aL~~I~~~lg~~~~p 888 (1265)
.+.+.+...|..++..+. .+ ....++++.++..+.+.. .. +. ...+....++...-...+.|
T Consensus 186 a~~~~~~~~r~~aL~sL~-------tD----~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~ 254 (343)
T cd08050 186 ALVGSNEEKRREALQSLR-------TD----PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEP 254 (343)
T ss_pred HHhCCCHHHHHHHHHHhc-------cC----CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHH
Confidence 334456666666655332 11 112356666666554421 11 21 23334444444444457899
Q ss_pred hHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCC
Q 000827 889 YLPQICGTIKWRL----------NNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEY 947 (1265)
Q Consensus 889 ~Lp~ilp~Ll~~L----------~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~ 947 (1265)
||-+++|.++.|+ .+.||.+|..|+.+++.|+..+.... ..+.+.+...+...+-|+.
T Consensus 255 Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y-~~l~~ri~~tl~k~l~d~~ 322 (343)
T cd08050 255 YLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSY-NTLQPRITRTLLKALLDPK 322 (343)
T ss_pred hHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHcCCC
Confidence 9999999999988 46789999999999999998777654 3356666666665555443
No 178
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.94 E-value=1.2 Score=56.74 Aligned_cols=174 Identities=18% Similarity=0.166 Sum_probs=102.2
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHHHHhh--------cchhhhhhHHHHHHHHHhhccCCCHHHHH----HHHHHHH-----
Q 000827 496 LPLLMQPTLEDQERHLLVKVIDRVLYK--------LDELVRPYVHKILVVIEPLLIDEDYYARV----EGREIIS----- 558 (1265)
Q Consensus 496 Lp~l~~~~led~~R~~~v~vi~~l~~~--------l~~~v~p~~~~Ll~~i~~lL~ded~~VR~----~a~~il~----- 558 (1265)
||++++--|+.-.|..++.++.+.+.. |.-.+-||+-||| ...-...|. ..++||+
T Consensus 474 LPiVLQVLLSQvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLL-------QS~a~ELrpiLVFIWAKILAvD~SC 546 (1387)
T KOG1517|consen 474 LPIVLQVLLSQVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLL-------QSSARELRPILVFIWAKILAVDPSC 546 (1387)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHh-------ccchHhhhhhHHHHHHHHHhcCchh
Confidence 333333334555677888888886543 2222346655544 222222221 2344443
Q ss_pred --HHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhh--C-----hhhHHHHHHHHHcCCchhHHHHHHHHHHH
Q 000827 559 --NLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASAL--G-----IPALLPFLKAVCQSKKSWQARHTGIKIVQ 629 (1265)
Q Consensus 559 --~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~l--g-----~~~Llp~L~~~l~s~~s~~~R~aal~~L~ 629 (1265)
.|.|..|...++..|.+. ..-.+.-|..+|-+++++...+ | -..++......+.+...|-.|.=...+||
T Consensus 547 Q~dLvKe~g~~YF~~vL~~~-~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG 625 (1387)
T KOG1517|consen 547 QADLVKENGYKYFLQVLDPS-QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLG 625 (1387)
T ss_pred HHHHHhccCceeEEEEecCc-CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 467777777777777662 2223456778888999988763 3 34677777777776423556666666666
Q ss_pred HHHHHhCC-CcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhC
Q 000827 630 QIAILIGC-AVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAA 677 (1265)
Q Consensus 630 ~i~~~~g~-~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~ 677 (1265)
.+=+.... ...---..-...+...+.|+.++||.+|+.|||.+.....
T Consensus 626 ~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~ 674 (1387)
T KOG1517|consen 626 RLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGS 674 (1387)
T ss_pred HHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccc
Confidence 65443221 0000011233455667899999999999999999987653
No 179
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.83 E-value=2.2 Score=48.95 Aligned_cols=223 Identities=17% Similarity=0.240 Sum_probs=141.4
Q ss_pred cchHHHHHHHHHHHHHHhc--hhhhchHHH---HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 000827 865 SDDANVMLNGFGAVVNSLG--QRVKPYLPQ---ICGTIKWRLNNK-SAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVV 938 (1265)
Q Consensus 865 ~ed~~~al~aL~~I~~~lg--~~~~p~Lp~---ilp~Ll~~L~d~-~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~ 938 (1265)
..+|.-.+..|+.+...+. ..-.+++|. +...|-+||+=. -..|-+.|.++...|-+.++...-.+-+.-..+-
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~G 101 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPG 101 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHH
Confidence 4567778888888888877 333355554 667777888754 4578899999999999888763211122333344
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-CCCCcChHHHH
Q 000827 939 LYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR-GAEFVPAREWM 1017 (1265)
Q Consensus 939 L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~-~~~~~~~~e~~ 1017 (1265)
|++.+.-..-.|+...+.-+....-.+|. .+.|.++.++-.+++.|.+.+.++.+.+..++-.+... +.+ ++ |.
T Consensus 102 Lfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~---~F-~~ 176 (307)
T PF04118_consen 102 LFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK---YF-WQ 176 (307)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh---HH-HH
Confidence 44444444456888888888888878877 88999999999999999999999999999999999988 444 22 33
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCC--cccHHHHHh
Q 000827 1018 RICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--FTVLPALMN 1095 (1265)
Q Consensus 1018 ~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp--~~vlPaL~~ 1095 (1265)
-++..++ . .+.+|..|. ..+.+.+.+... ......... .....++ ..++-++..
T Consensus 177 ~lwl~ii---~--sp~~Rl~al---~~l~~~l~~~~~-----~~~~~~~~~-----------~~~~~~~~~~Llv~al~~ 232 (307)
T PF04118_consen 177 CLWLCII---T--SPSRRLGAL---NYLLRRLPKFQN-----DELSLSSEE-----------QEYCLGPDPGLLVRALCA 232 (307)
T ss_pred HHHHHHh---c--CcchhHHHH---HHHHHhCCcccc-----cccccchHH-----------HHHhcCCCccHHHHHHHH
Confidence 3333332 2 334554443 333333222110 000000000 0011232 245667778
Q ss_pred hcCCCchhHHHHHHHHHHHHH
Q 000827 1096 EYRVPELNVQNGVLKSLSFLF 1116 (1265)
Q Consensus 1096 ~~~~~~~~vq~~vl~al~~l~ 1116 (1265)
.+.+.+.-||-++|+.|..-|
T Consensus 233 ~L~D~~iLVqR~~LDlLl~~~ 253 (307)
T PF04118_consen 233 CLEDENILVQRGFLDLLLSHF 253 (307)
T ss_pred HhCCchHHHHHHHHHHHHHhC
Confidence 888888888888888776544
No 180
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.82 E-value=1.9 Score=52.87 Aligned_cols=117 Identities=19% Similarity=0.188 Sum_probs=84.2
Q ss_pred hchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHHh
Q 000827 887 KPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYL-GEEYPEVLGSILGALKAIVNVI 965 (1265)
Q Consensus 887 ~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L-~d~~~~V~~~al~aL~~lv~~~ 965 (1265)
...+..=...+..+|.|+.+.||..|..-+.++....-.-....++..|+.-++.-+ .|...+||-++..+|..+..+=
T Consensus 215 D~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np 294 (1005)
T KOG1949|consen 215 DSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP 294 (1005)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc
Confidence 344444556777899999999999999888877653322111344555444444433 4667799999999999997632
Q ss_pred CcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000827 966 GMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 966 g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~ 1006 (1265)
.--|.++.++|++-..|.+..++||.++++.+-.|-..
T Consensus 295 ---~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 295 ---LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred ---cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 22356788899888889999999999999998887544
No 181
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=93.59 E-value=14 Score=43.02 Aligned_cols=61 Identities=5% Similarity=0.165 Sum_probs=44.3
Q ss_pred cchHHHHHHHHHHHHHHhchhh----hchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhh
Q 000827 865 SDDANVMLNGFGAVVNSLGQRV----KPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQ 925 (1265)
Q Consensus 865 ~ed~~~al~aL~~I~~~lg~~~----~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~ 925 (1265)
++.|.....-+.++++.|-..+ ...+..++..+.|++++.+..|...++.++..+...+..
T Consensus 134 Pe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 134 PEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 3445555556666666554322 233556778888999999999999999999999987765
No 182
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.51 E-value=1.3 Score=48.76 Aligned_cols=161 Identities=21% Similarity=0.293 Sum_probs=83.2
Q ss_pred ccCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhcC---CCCCHHHHH-HHHHHHHHHHhhcchhhhhhHHHHHHHHH
Q 000827 464 VKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQ---PTLEDQERH-LLVKVIDRVLYKLDELVRPYVHKILVVIE 539 (1265)
Q Consensus 464 lkn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~---~~led~~R~-~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~ 539 (1265)
++..+.++|..|+.+|.+ +-|...++..|+.++.+ ..+.+-+.. +.+.++..++....-+|.||+|+|++-|.
T Consensus 207 ~dEs~~~~r~aAl~sLr~---dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSil 283 (450)
T COG5095 207 LDESDEQTRDAALESLRN---DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSIL 283 (450)
T ss_pred HHHHHHHHHHHHHHHhcc---CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHH
Confidence 456678899999988865 44433333333333322 223333332 33345555555555567899999998886
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhC--hhhHHH-----HHHHHH
Q 000827 540 PLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALG--IPALLP-----FLKAVC 612 (1265)
Q Consensus 540 ~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg--~~~Llp-----~L~~~l 612 (1265)
.+|. ++..|- ..-+|..-.+|..||..++.+.+.++ ...|-| .|++.+
T Consensus 284 Tcli-----------------akklg~--------~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafL 338 (450)
T COG5095 284 TCLI-----------------AKKLGN--------VPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFL 338 (450)
T ss_pred HHHH-----------------HHHhcC--------CCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHH
Confidence 6543 222221 00112223466667766666666554 222222 344555
Q ss_pred cCCchhHHHHHHHHHHHHHHHH-hCCCcchhHHHHHHHHHh
Q 000827 613 QSKKSWQARHTGIKIVQQIAIL-IGCAVLPHLRSLVEIIEH 652 (1265)
Q Consensus 613 ~s~~s~~~R~aal~~L~~i~~~-~g~~l~p~L~~ll~~l~~ 652 (1265)
...+.....++|++++..+... +...+.|.++.-...+.+
T Consensus 339 D~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~k 379 (450)
T COG5095 339 DREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNK 379 (450)
T ss_pred hcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHH
Confidence 5555455566777776644322 112344555544444433
No 183
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.9 Score=54.07 Aligned_cols=267 Identities=18% Similarity=0.147 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCC-C---HHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHH
Q 000827 951 LGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-H---EKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEM 1026 (1265)
Q Consensus 951 ~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~-~---~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~ 1026 (1265)
-+.++.||+-|-..+|.+. ..| |.+-+.+. + ..++--++--||.+...+.+. .++..+-+.
T Consensus 390 eGGalyalGLI~Agfgr~~-TeY-------L~e~~~~teDe~~~~l~yG~~LGiGL~~MgSan~-------eiye~lKe~ 454 (926)
T COG5116 390 EGGALYALGLIKAGFGRED-TEY-------LLEYFLDTEDELTPELAYGVCLGIGLINMGSANR-------EIYEKLKEL 454 (926)
T ss_pred cCceeeeehhhccCcCccc-HHH-------HHHHhCcccccccHHHHHHHHhhhcchhcccccH-------HHHHHHHHH
Confidence 4567888888877766432 223 33333332 2 245555555566555443322 333333334
Q ss_pred HhhchHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhcccchh-hHHHHHHHHHHHHhhcCCcccHHHHHhhcC-CCchhH
Q 000827 1027 LKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQ-NRVCTTVAIAIVAETCSPFTVLPALMNEYR-VPELNV 1104 (1265)
Q Consensus 1027 Lk~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~L~~~e~~-~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~-~~~~~v 1104 (1265)
++....-.-.++.-.+|.+.-..+....+.-+...- +|.| -|+.-..+||+---..|.....-.+++++. +-+.-.
T Consensus 455 l~nD~a~~geAa~~gMGl~mLgt~s~eai~dm~tya--~ETqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~ds~l 532 (926)
T COG5116 455 LKNDRALLGEAAVYGMGLLMLGTWSVEAIEDMRTYA--GETQHERIKRGLGIGFALILYGRQEMADDYINELLYDKDSIL 532 (926)
T ss_pred HhcchhhhhhhhhhccceeeecCCCHHHHHHHHHHh--cchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCchHHh
Confidence 444433333445555565543333334444333321 1111 122223333332222333222223334322 111122
Q ss_pred H-HHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhcccC
Q 000827 1105 Q-NGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFET 1183 (1265)
Q Consensus 1105 q-~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~~~ 1183 (1265)
+ +|++ +.-..|+|..-...+..++++ +.+|.+.+||+.|..+++ ......-+.++..+..+-.+ -
T Consensus 533 Ry~G~f---s~alAy~GTgn~~vv~~lLh~---avsD~nDDVrRAAViAlG-----fvc~~D~~~lv~tvelLs~s---h 598 (926)
T COG5116 533 RYNGVF---SLALAYVGTGNLGVVSTLLHY---AVSDGNDDVRRAAVIALG-----FVCCDDRDLLVGTVELLSES---H 598 (926)
T ss_pred hhccHH---HHHHHHhcCCcchhHhhhhee---ecccCchHHHHHHHHhee-----eeEecCcchhhHHHHHhhhc---c
Confidence 2 2332 222223343222334444443 577888888988865543 33222224555555444333 5
Q ss_pred ChHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcchhhHHHHHHHHHhhhhhccccCcceeccCCC
Q 000827 1184 SPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPTL 1248 (1265)
Q Consensus 1184 s~~v~~~~~~a~~~~~~~~g~~~~~~~~~~gl~~~a~~vr~~~~~~~~~~~~~~~~~~~~~~p~~ 1248 (1265)
.+|||-++.-+++-+....|...-.+.+-.-..+|..=|||...=-.+.+.++|-+.|.|-|-++
T Consensus 599 N~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I 663 (926)
T COG5116 599 NFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRI 663 (926)
T ss_pred chhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHH
Confidence 68999988888887777777777777777777888999999988888899999999999987554
No 184
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.10 E-value=22 Score=41.56 Aligned_cols=184 Identities=13% Similarity=0.270 Sum_probs=110.9
Q ss_pred chHHHHHHHHHHHHHH-hchhh---hchH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHH-
Q 000827 866 DDANVMLNGFGAVVNS-LGQRV---KPYL----PQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCH-EEQLMGHL- 935 (1265)
Q Consensus 866 ed~~~al~aL~~I~~~-lg~~~---~p~L----p~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~-~~~ll~~L- 935 (1265)
|.+..+...++.+... .+.+. ..|| |.++..|+.+-++++ .+-..|.+. +.|. ++.+...+
T Consensus 91 EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~d------ial~~g~ml---Rec~k~e~l~~~iL 161 (335)
T PF08569_consen 91 ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPD------IALNCGDML---RECIKHESLAKIIL 161 (335)
T ss_dssp HHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTT------THHHHHHHH---HHHTTSHHHHHHHH
T ss_pred cccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcc------ccchHHHHH---HHHHhhHHHHHHHh
Confidence 3345555555555543 33332 2344 677888888777665 223333333 3332 12222211
Q ss_pred ----HHHHHHhhCCCCHHHHHHHHHHHHHHHHH---hCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCC
Q 000827 936 ----GVVLYEYLGEEYPEVLGSILGALKAIVNV---IGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGA 1008 (1265)
Q Consensus 936 ----~~~L~~~L~d~~~~V~~~al~aL~~lv~~---~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~ 1008 (1265)
+--++++.....-+|.+.+...+.++... +..+.+....+.++.....+|.+.|+-+|..++.++|.|...-.
T Consensus 162 ~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~ 241 (335)
T PF08569_consen 162 YSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRS 241 (335)
T ss_dssp TSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGG
T ss_pred CcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchh
Confidence 11245666777889999999999987643 22334556667788888889999999999999999999886422
Q ss_pred C------CcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhh-CcHHHHHHHHHh
Q 000827 1009 E------FVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAI-GPQDVLATLLNN 1061 (1265)
Q Consensus 1009 ~------~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~i-Gp~~vlp~Ll~~ 1061 (1265)
. ++... .-|..++..|++..+++|..|...|-..+..- .|..|...|..|
T Consensus 242 n~~vm~~yi~~~---~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~N 298 (335)
T PF08569_consen 242 NFNVMTRYISSP---ENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKN 298 (335)
T ss_dssp GHHHHHHHTT-H---HHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHT
T ss_pred HHHHHHHHHCCH---HHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 1 22222 44555677789999999999999998876543 345666666543
No 185
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.08 E-value=1.3 Score=48.75 Aligned_cols=95 Identities=20% Similarity=0.242 Sum_probs=57.4
Q ss_pred ChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccch---H---HHHHHHHHHHHHHhchhhhchHHHHH
Q 000827 821 SEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDD---A---NVMLNGFGAVVNSLGQRVKPYLPQIC 894 (1265)
Q Consensus 821 ~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed---~---~~al~aL~~I~~~lg~~~~p~Lp~il 894 (1265)
..+.|+.+++++- . +.-..++++.++..|.++-..+ . ...++...++...-..-+.||+.|++
T Consensus 211 ~~~~r~aAl~sLr-------~----dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlm 279 (450)
T COG5095 211 DEQTRDAALESLR-------N----DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLM 279 (450)
T ss_pred HHHHHHHHHHHhc-------c----CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHH
Confidence 4567777776542 1 1223467777777775532211 1 12223333333333334689999999
Q ss_pred HHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHhhc
Q 000827 895 GTIKWRLN----------NKSAKVRQQAADLISRIAVVMKQC 926 (1265)
Q Consensus 895 p~Ll~~L~----------d~~~~VR~~A~~~lg~La~~l~~~ 926 (1265)
|.|+.||- +.+..+|..|+++++-.+..+...
T Consensus 280 PSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~ 321 (450)
T COG5095 280 PSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS 321 (450)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh
Confidence 99988862 235679999999999887766543
No 186
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=93.07 E-value=23 Score=41.66 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHH-----hchhhhchH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcc---hHHHHHHHHH
Q 000827 869 NVMLNGFGAVVNS-----LGQRVKPYL---PQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCH---EEQLMGHLGV 937 (1265)
Q Consensus 869 ~~al~aL~~I~~~-----lg~~~~p~L---p~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~---~~~ll~~L~~ 937 (1265)
.-++.-|..+++. +|.....|| |+++..+...+...+....-.+.-+||.+++.-..|. +.+++++|+.
T Consensus 284 ~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~ 363 (604)
T KOG4500|consen 284 TDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLIS 363 (604)
T ss_pred HHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Confidence 3444555555552 344333343 5677777888887777888888999999998554443 3568888888
Q ss_pred HHHHhh-CCCCHHHHHHHHHHHHHHHHHhC-cccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000827 938 VLYEYL-GEEYPEVLGSILGALKAIVNVIG-MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRI 1003 (1265)
Q Consensus 938 ~L~~~L-~d~~~~V~~~al~aL~~lv~~~g-~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~I 1003 (1265)
.|...- -|.+-+++-++|.||++++--+. ...|.| ..+...++..++...+.|.-.-+.++..+
T Consensus 364 ~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~--aGvteaIL~~lk~~~ppv~fkllgTlrM~ 429 (604)
T KOG4500|consen 364 CLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAP--AGVTEAILLQLKLASPPVTFKLLGTLRMI 429 (604)
T ss_pred HHHHhcCCCccchhHHHHHHHHHhccccCCchhhccc--cchHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 877533 35566788899999999864221 112222 34566777777777766655444444433
No 187
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.78 E-value=4.8 Score=41.98 Aligned_cols=117 Identities=20% Similarity=0.222 Sum_probs=86.4
Q ss_pred hchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-hhcch---HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 000827 887 KPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVM-KQCHE---EQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIV 962 (1265)
Q Consensus 887 ~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l-~~~~~---~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv 962 (1265)
+..+..++..+..+|+++++.-|-.++.+++.++..- ..++. ..++..|..+|-. .+.+.++..+|.+|..|.
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~---~~~~~~~~~ai~~L~~l~ 96 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK---PDPPSVLEAAIITLTRLF 96 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHH
Confidence 4466778888889999999999999999998888754 22221 2344444444421 344678999999999999
Q ss_pred HHhCc------ccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCC
Q 000827 963 NVIGM------TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGA 1008 (1265)
Q Consensus 963 ~~~g~------~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~ 1008 (1265)
..++. +...|.+..+++.++.++++ ..+.+.++.++..+...-+
T Consensus 97 ~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 97 DLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred HHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 87653 23578999999999998886 5577888999998888733
No 188
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.44 E-value=2.8 Score=53.10 Aligned_cols=177 Identities=15% Similarity=0.141 Sum_probs=91.2
Q ss_pred HHHHHhhcCChhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHH
Q 000827 479 LTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIIS 558 (1265)
Q Consensus 479 L~~~A~~~G~~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~ 558 (1265)
+-+....-|-.+.+..+...+.+..+++.+...+ +..++.....--..++..++.++..--.-.+..+|..+...++
T Consensus 346 ~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~---~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~ 422 (574)
T smart00638 346 FLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQL---LAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYG 422 (574)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHH---HHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHH
Confidence 3444444566677888888888777776443322 2222222111112344444444432222346678888888888
Q ss_pred HHHHHhc----------hHHHHH----hhccCCCCchHHHHHHHHHHHHHHHhhhChhhHHHHHHHHHc--CCchhHHHH
Q 000827 559 NLSKAAG----------LATMIA----AMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQ--SKKSWQARH 622 (1265)
Q Consensus 559 ~La~~~G----------l~~~~~----~L~~~l~~~d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~~l~--s~~s~~~R~ 622 (1265)
.++.... +..++. .|....+..+...+....++|+-+ |.+..++.|...+. ...+...|-
T Consensus 423 ~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~----g~~~~i~~l~~~l~~~~~~~~~iR~ 498 (574)
T smart00638 423 SLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA----GHPSSIKVLEPYLEGAEPLSTFIRL 498 (574)
T ss_pred HHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc----CChhHHHHHHHhcCCCCCCCHHHHH
Confidence 8876421 112222 222222223333444444444433 34444444444433 222357899
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCC--CChhhHHHHHHHH
Q 000827 623 TGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLND--ENQKVRTITALSL 669 (1265)
Q Consensus 623 aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~D--e~~~VR~~A~~aL 669 (1265)
+|+++|..++..... .+-+.+...+.| ++..||.+|+..|
T Consensus 499 ~Av~Alr~~a~~~p~-------~v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 499 AAILALRNLAKRDPR-------KVQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHHHHHHHHhCch-------HHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 999999977664432 222333333333 6788999987764
No 189
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.36 E-value=14 Score=47.46 Aligned_cols=264 Identities=16% Similarity=0.195 Sum_probs=113.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHhCcccC
Q 000827 893 ICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEE--YPEVLGSILGALKAIVNVIGMTKM 970 (1265)
Q Consensus 893 ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~--~~~V~~~al~aL~~lv~~~g~~~l 970 (1265)
++..+-..+.++...+...+...+.+|...++....+++. .+..- +... ....+.-.+.||... |.
T Consensus 326 l~~~l~~~~~~~~~~~~~~~~~~f~~Lv~~lr~l~~~~L~-~l~~~----~~~~~~~~~~r~~~lDal~~a----GT--- 393 (618)
T PF01347_consen 326 LLKELADLLEEPEDPVSKETLSKFSRLVRLLRTLSYEDLE-ELYKQ----LKSKSKKEQARKIFLDALPQA----GT--- 393 (618)
T ss_dssp HHHHHHHHHHH-SSS--TTHHHHHHHHHHHHTTS-HHHHH-HHHHH----HTTS---HHHHHHHHHHHHHH-----S---
T ss_pred HHHHHHHHhhCcccccchhHHHHHHHHHHHHhcCCHHHHH-HHHHH----HHhhccHHHHHHHHHHHHHHc----CC---
Confidence 3333334443333345555556677777777665433221 11111 1111 233444444444443 32
Q ss_pred CccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHhh
Q 000827 971 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKA-HKKGIRRATVNTFGYIAKAI 1049 (1265)
Q Consensus 971 ~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~-~~~~iR~~a~~tlg~Ia~~i 1049 (1265)
..-+..+.+.+.+..-. -..+..+|..+..... -|..+++..+..|++.-.. ..+.+|..++-++|.++...
T Consensus 394 ----~~av~~i~~~I~~~~~~-~~ea~~~l~~l~~~~~--~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~ 466 (618)
T PF01347_consen 394 ----NPAVKFIKDLIKSKKLT-DDEAAQLLASLPFHVR--RPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKY 466 (618)
T ss_dssp ----HHHHHHHHHHHHTT-S--HHHHHHHHHHHHHT-------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCce
Confidence 22333455555553321 1224455655555421 1222233333344322111 25679999999999998543
Q ss_pred -CcH---------------HHHHHHHHhhc----ccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCC---chhHHH
Q 000827 1050 -GPQ---------------DVLATLLNNLK----VQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVP---ELNVQN 1106 (1265)
Q Consensus 1050 -Gp~---------------~vlp~Ll~~L~----~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~---~~~vq~ 1106 (1265)
... .+++.|.+.|+ ..+...+...+.|||-++- ..++|.|+.-+... ...+|-
T Consensus 467 c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----~~~i~~l~~~i~~~~~~~~~~R~ 542 (618)
T PF01347_consen 467 CVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----PESIPVLLPYIEGKEEVPHFIRV 542 (618)
T ss_dssp HTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----GGGHHHHHTTSTTSS-S-HHHHH
T ss_pred eecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----chhhHHHHhHhhhccccchHHHH
Confidence 221 24444444443 2233445556666665532 24566665544332 234555
Q ss_pred HHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccC--ChhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhcccCC
Q 000827 1107 GVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDR--DLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETS 1184 (1265)
Q Consensus 1107 ~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~--d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~~~s 1184 (1265)
.++.+|.. ....+-..+.+.|...+.|. +..+|-.|..++- .|. -....+.++.+.++ .|++
T Consensus 543 ~Ai~Alr~-------~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm----~~~--P~~~~l~~i~~~l~---~E~~ 606 (618)
T PF01347_consen 543 AAIQALRR-------LAKHCPEKVREILLPIFMNTTEDPEVRIAAYLILM----RCN--PSPSVLQRIAQSLW---NEPS 606 (618)
T ss_dssp HHHHTTTT-------GGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHH----HT-----HHHHHHHHHHHT---T-S-
T ss_pred HHHHHHHH-------HhhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHH----hcC--CCHHHHHHHHHHHh---hCch
Confidence 55555532 12222234455555555554 4566766654431 220 01123333333332 4677
Q ss_pred hHHHHHHHHHH
Q 000827 1185 PHVINAVMEAI 1195 (1265)
Q Consensus 1185 ~~v~~~~~~a~ 1195 (1265)
++|.+.++..|
T Consensus 607 ~QV~sfv~S~L 617 (618)
T PF01347_consen 607 NQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88887777765
No 190
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.15 E-value=60 Score=44.31 Aligned_cols=147 Identities=20% Similarity=0.214 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC
Q 000827 726 TKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVG 805 (1265)
Q Consensus 726 ~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g 805 (1265)
+..|++.|...+.+.++++|..|.+.++.+....+ ..+. +--+.+
T Consensus 257 l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~---~~l~-~~~~~~------------------------------- 301 (1266)
T KOG1525|consen 257 LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD---SQLS-ETYDDL------------------------------- 301 (1266)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch---hhhc-ccchHH-------------------------------
Confidence 44577888888999999999999998887765431 0000 001112
Q ss_pred hhhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcc-c-chHHHHHHHHHHHHHHhc
Q 000827 806 VADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQT-S-DDANVMLNGFGAVVNSLG 883 (1265)
Q Consensus 806 ~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~-~-ed~~~al~aL~~I~~~lg 883 (1265)
+...+.++.|.+.++|-.+++...+++.+...-.. ... +.-++.+.. + +++.. -..+-.++....
T Consensus 302 ----~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~------~~~--~~~~l~~~~~D~~~rir-~~v~i~~~~v~~ 368 (1266)
T KOG1525|consen 302 ----WSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK------AST--ILLALRERDLDEDVRVR-TQVVIVACDVMK 368 (1266)
T ss_pred ----HHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh------HHH--HHHHHHhhcCChhhhhe-eeEEEEEeehhH
Confidence 22234456688889998888877777655322110 100 111222111 1 11100 000000111111
Q ss_pred hhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000827 884 QRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAV 921 (1265)
Q Consensus 884 ~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~ 921 (1265)
.. ..+.+.++..+..++.|+.++||..|+.-+.++..
T Consensus 369 ~~-l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 369 FK-LVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hh-hhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 11 24556688888899999999999999999888887
No 191
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.90 E-value=5.7 Score=41.43 Aligned_cols=129 Identities=14% Similarity=0.081 Sum_probs=88.7
Q ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhc-hhhhchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHhhcch--H
Q 000827 854 DGILYAFQEQTSDDANVMLNGFGAVVNSLG-QRVKPYLPQICGTIKWRLNNK-SAKVRQQAADLISRIAVVMKQCHE--E 929 (1265)
Q Consensus 854 ~~ll~~l~e~~~ed~~~al~aL~~I~~~lg-~~~~p~Lp~ilp~Ll~~L~d~-~~~VR~~A~~~lg~La~~l~~~~~--~ 929 (1265)
..+...++....+.|-.++.-++.+++.++ +.|..+-.+.+..++..|+.+ ...+.+.++.++.+|...++...+ .
T Consensus 28 ~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~R 107 (165)
T PF08167_consen 28 TRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTR 107 (165)
T ss_pred HHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 334444444334456678888888888885 455455566666666777764 567899999999999987765321 1
Q ss_pred H----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHh
Q 000827 930 Q----LMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPIL 985 (1265)
Q Consensus 930 ~----ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L 985 (1265)
+ .++.+++.++..+++ ..+...++.+|..++... +..+.||...|-..+++.+
T Consensus 108 ei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~-ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 108 EIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH-PTTFRPFANKIESALLSLL 164 (165)
T ss_pred HHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC-CccccchHHHHHHHHHHHh
Confidence 2 355566666655554 567788999999999876 6678888888777766554
No 192
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.35 E-value=56 Score=42.40 Aligned_cols=265 Identities=15% Similarity=0.127 Sum_probs=137.4
Q ss_pred HHHHHHHHhcChh---h---hHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhh--cccc
Q 000827 795 ETTVEIANKVGVA---D---IVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQE--QTSD 866 (1265)
Q Consensus 795 ~~~~~la~~~g~~---~---il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e--~~~e 866 (1265)
+.++.++...|.. . .+-.++..+.+.++-+++.+..++..|+.+++-... +.+...-.|.++..+.- .++.
T Consensus 570 d~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~-~~lI~en~DYlv~sla~~L~~~~ 648 (1014)
T KOG4524|consen 570 DSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSP-PHLIRENVDYLVNSLALRLNTSG 648 (1014)
T ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCCh-HHHHHhhhHHHHHHHHHHhccCC
Confidence 4445555555542 1 222345566788888888888888899988865432 22333334445444421 2222
Q ss_pred hHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHH----
Q 000827 867 DANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHE-EQLMGHLGVVLYE---- 941 (1265)
Q Consensus 867 d~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~-~~ll~~L~~~L~~---- 941 (1265)
+...+-..+..++..-+...-|++.+++.+++..+...|-.--..-...+-.+...+++.+. ..++.++...+..
T Consensus 649 ~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~~~~~k 728 (1014)
T KOG4524|consen 649 MSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQHISQSTK 728 (1014)
T ss_pred CCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHH
Confidence 22234445555666666677899999999999988876643211111111122222221111 0111111111100
Q ss_pred ----------hhCCCCHHHHHHHHHHHHH--HHHHh-----------------C--cc--cCCcc-------HHhHHHHH
Q 000827 942 ----------YLGEEYPEVLGSILGALKA--IVNVI-----------------G--MT--KMTPP-------IKDLLPRL 981 (1265)
Q Consensus 942 ----------~L~d~~~~V~~~al~aL~~--lv~~~-----------------g--~~--~l~p~-------l~~Llp~L 981 (1265)
.+.+...+........+.+ +.+.. + .+ .-.|. +.+|+.+.
T Consensus 729 ~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~edens~~~d~ep~~~~qv~iv~kIl~r~ 808 (1014)
T KOG4524|consen 729 VLNELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDENSEYTDTEPILPDQVKIVLKILGRG 808 (1014)
T ss_pred HhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCccccccCCCCCCCCCChHHHHHHHHHHHH
Confidence 0000000111111111111 11000 0 00 01222 34556666
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhh----CCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcH-----
Q 000827 982 TPILKNRHEKVQENCIDLVGRIADR----GAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQ----- 1052 (1265)
Q Consensus 982 l~~L~~~~~~Vre~ai~~ig~Ia~~----~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~----- 1052 (1265)
..+|.+.+..+|..+++++...... ...++|. ....++.++..++..++-+-..|+.|+-.+++..|.+
T Consensus 809 ~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPl--vhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~ 886 (1014)
T KOG4524|consen 809 IHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPL--VHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRF 886 (1014)
T ss_pred HHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHH--HHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 6677788888999999888754332 2233333 3455667777888888888888999999999888874
Q ss_pred --HHHHHHHHhh
Q 000827 1053 --DVLATLLNNL 1062 (1265)
Q Consensus 1053 --~vlp~Ll~~L 1062 (1265)
+|+|.|-..+
T Consensus 887 l~dvlP~l~~~~ 898 (1014)
T KOG4524|consen 887 LEDVLPWLKHLC 898 (1014)
T ss_pred HHHHHHHHHHHH
Confidence 6777765443
No 193
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=91.01 E-value=0.94 Score=53.17 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=62.3
Q ss_pred hChhhHHHHHHHHHcCCc------hhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhc----------CCCChhhH
Q 000827 599 LGIPALLPFLKAVCQSKK------SWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGL----------NDENQKVR 662 (1265)
Q Consensus 599 lg~~~Llp~L~~~l~s~~------s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L----------~De~~~VR 662 (1265)
-|+..|+|++...+.+.- ++..=...+..+..+...-...+.+|+.+|+|.+..++ .++++.+|
T Consensus 206 ~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LR 285 (343)
T cd08050 206 PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALR 285 (343)
T ss_pred CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHH
Confidence 346677777776654321 12222223333333333333477899999999999876 35678999
Q ss_pred HHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhcc
Q 000827 663 TITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSH 698 (1265)
Q Consensus 663 ~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~ 698 (1265)
..|+..++.++..+......--..|+..+.+.+.+.
T Consensus 286 d~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~ 321 (343)
T cd08050 286 DYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDP 321 (343)
T ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCC
Confidence 999999999998887543322234555555555544
No 194
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.91 E-value=86 Score=43.74 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=99.9
Q ss_pred CHHHHHHHHH------HHHHHHhhCC-CCcChHHHHHHHHHH-HHHHhhchHHHHHHHHHHHHHHHHhhCcHHHHH----
Q 000827 989 HEKVQENCID------LVGRIADRGA-EFVPAREWMRICFEL-LEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLA---- 1056 (1265)
Q Consensus 989 ~~~Vre~ai~------~ig~Ia~~~~-~~~~~~e~~~il~~L-L~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~vlp---- 1056 (1265)
.+.|+.++.. +++.++...+ ..+-+.++-.+-..+ ++.|...++.+|..+.++++.++..+|...++.
T Consensus 839 ~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq 918 (2067)
T KOG1822|consen 839 QQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQ 918 (2067)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 4567766655 3444554422 234343343443333 345566788899999999999999998765444
Q ss_pred HHHHhhcc-cchhhHHHHHHHHHHHHhhcCC---c----c---cHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhh
Q 000827 1057 TLLNNLKV-QERQNRVCTTVAIAIVAETCSP---F----T---VLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKD 1125 (1265)
Q Consensus 1057 ~Ll~~L~~-~e~~~R~~~~~ai~~l~e~~gp---~----~---vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~ 1125 (1265)
.++..+++ ++...|.+...|+|.+.++.|. + + ++=+|...-..| +||...|++++.+....+.+...
T Consensus 919 ~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p--~VqtwSL~al~~i~~s~~p~~~~ 996 (2067)
T KOG1822|consen 919 NSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSP--VVQTWSLHALALILDSSGPMFRV 996 (2067)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCc--hhhhhHHHHHHHHHcCCCceehh
Confidence 44455543 4567789999999999999875 2 2 333444433333 79999999999999888888877
Q ss_pred hHHhHHHHHHHHhcc
Q 000827 1126 YIYAVTPLLEDALMD 1140 (1265)
Q Consensus 1126 yi~~i~PlL~~~l~d 1140 (1265)
|+...+-++..++-.
T Consensus 997 ~ve~tlsl~~~lLls 1011 (2067)
T KOG1822|consen 997 LVEPTLSLCLKLLLS 1011 (2067)
T ss_pred hHHHHHHHHHHHcCC
Confidence 887777766665433
No 195
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.89 E-value=7.5 Score=52.29 Aligned_cols=163 Identities=17% Similarity=0.120 Sum_probs=102.6
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCH------------HHHHHHHH--HHHHHHHHhch----HHHH-----
Q 000827 514 KVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDY------------YARVEGRE--IISNLSKAAGL----ATMI----- 570 (1265)
Q Consensus 514 ~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~------------~VR~~a~~--il~~La~~~Gl----~~~~----- 570 (1265)
.+...+...+..++.||...++....-+|..-+. ..|..+.. .+-++++.+++ ..+.
T Consensus 1417 ~f~~~l~esl~si~~pYf~~~l~~~~~~L~k~n~s~~~~~~~~~~~~~r~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~~r~ 1496 (1621)
T KOG1837|consen 1417 HFADYLQESLKSIVTPYFGYLLEPRVILLKKINASKHRWFWLLPVNQSRKPLLLGTLVLNCLKDLFLFDTIESFVTKSRF 1496 (1621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhhhhcccccchhHHHHHHHHHHHHHHHhhhhhHHHHhhhhh
Confidence 5677778888889999999988877666552111 12322221 22233332221 1111
Q ss_pred --------Hhhcc--CCCCchHHHHHHHHHHHHHHHhhhC--hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCC
Q 000827 571 --------AAMRP--DIDNIDEYVRNTTARAFSVVASALG--IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCA 638 (1265)
Q Consensus 571 --------~~L~~--~l~~~d~~vR~~aa~~l~~lA~~lg--~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~ 638 (1265)
..+.. .-.+...+|-...+-+++.++.+.+ |+.+..-++....+.. ...|..|+.++.++...+|..
T Consensus 1497 ~~~~~p~v~ql~n~~~e~~~~~~v~~~li~~i~~~~~a~~~d~~pl~~k~l~~trss~-~~~r~~ai~~~~~l~~~lge~ 1575 (1621)
T KOG1837|consen 1497 ELLSYPLVSQLVNVLLEFYASDIVSKLLIAEIASDSVADKDDLKPLNQKILKKTRSSS-RKARYLAIIQVKLLYTKLGEN 1575 (1621)
T ss_pred hhhhhhhHHHHHHhhccchhhhHHHHHHHHHHHhhccCChhhhHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhcch
Confidence 11111 0112233355555555555555544 6666655444444433 679999999999999999999
Q ss_pred cchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhC
Q 000827 639 VLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAA 677 (1265)
Q Consensus 639 l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~ 677 (1265)
..+++++++|.|-..+.|++..|-..+...+-++=+.++
T Consensus 1576 ~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lG 1614 (1621)
T KOG1837|consen 1576 VIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLG 1614 (1621)
T ss_pred hHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998887776665554443
No 196
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=90.70 E-value=52 Score=40.89 Aligned_cols=120 Identities=12% Similarity=0.188 Sum_probs=75.8
Q ss_pred hhhHHHHHHHhcCC--ChhHHHHHHHHH---HHHHHhhCCCCchhHHHHHHHHHHHHHhhh-----ccc---chHHHHHH
Q 000827 807 ADIVGRIVEDLKDE--SEPYRRMVMETI---EKVVANLGASDIDARLEELLIDGILYAFQE-----QTS---DDANVMLN 873 (1265)
Q Consensus 807 ~~il~~i~~~l~d~--~~~vR~~a~~~l---~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e-----~~~---ed~~~al~ 873 (1265)
+.++..+...+... +..+|..+++.+ ..++...+.... ..+.+-++.++...++. ... +.|..+..
T Consensus 318 ~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe 396 (501)
T PF13001_consen 318 PNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYE 396 (501)
T ss_pred ccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCcccHHHHHHHHH
Confidence 45666666666665 567777777777 555444432111 12233333344444421 111 22677889
Q ss_pred HHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcch
Q 000827 874 GFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHE 928 (1265)
Q Consensus 874 aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~ 928 (1265)
++|.++.....-+..- -.++..++..|.+..++||.+.-++|+.++..+.....
T Consensus 397 ~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~ 450 (501)
T PF13001_consen 397 TLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPD 450 (501)
T ss_pred HHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 9998888766543111 24677788888999999999999999999998876543
No 197
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.69 E-value=2.1 Score=39.87 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcHHHHHH
Q 000827 978 LPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLAT 1057 (1265)
Q Consensus 978 lp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~ 1057 (1265)
+...+.-|.++...||..++..+..+..... .+...+..++..++..|++++.-+--+|++++..++... |..+++.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~-p~~vl~~ 81 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH-PDEVLPI 81 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC-hHHHHHH
Confidence 3445556677778899999999999988755 222234577777888889988888889999999998765 6678888
Q ss_pred HHHhhcc
Q 000827 1058 LLNNLKV 1064 (1265)
Q Consensus 1058 Ll~~L~~ 1064 (1265)
|+..+..
T Consensus 82 L~~~y~~ 88 (92)
T PF10363_consen 82 LLDEYAD 88 (92)
T ss_pred HHHHHhC
Confidence 8887654
No 198
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=90.55 E-value=3 Score=40.05 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 000827 866 DDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLY 940 (1265)
Q Consensus 866 ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~ 940 (1265)
.++..++.+++.+.+.++..+.+++|||+-.|...++.+ .+|..|+.+...+...+....-..+++.+...++
T Consensus 30 ~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~ 102 (107)
T PF08064_consen 30 PEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILL 102 (107)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 346789999999999888899999999999998888876 8999999999999988765322234444444443
No 199
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.51 E-value=26 Score=44.41 Aligned_cols=158 Identities=14% Similarity=0.119 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhhc----hHHHHHHHHHHHHHHHHh-hC-c--------HHHHHHHHHhhcc----cchhhHHHHHHHHHH
Q 000827 1018 RICFELLEMLKAH----KKGIRRATVNTFGYIAKA-IG-P--------QDVLATLLNNLKV----QERQNRVCTTVAIAI 1079 (1265)
Q Consensus 1018 ~il~~LL~~Lk~~----~~~iR~~a~~tlg~Ia~~-iG-p--------~~vlp~Ll~~L~~----~e~~~R~~~~~ai~~ 1079 (1265)
.++..++++++.+ .+.+|..++-++|.++.. |. . ..+++.|.+.|.. .+...+...+.|||-
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 3444444444432 567888888888888863 21 1 2455555544322 223334445555553
Q ss_pred HHhhcCCcccHHHHHhhcC---CCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccC--ChhHHHHHHHHHH
Q 000827 1080 VAETCSPFTVLPALMNEYR---VPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDR--DLVHRQTAASAVK 1154 (1265)
Q Consensus 1080 l~e~~gp~~vlPaL~~~~~---~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~--d~~~Rq~A~~~l~ 1154 (1265)
++-. .+++.|..-+. .....+|-.++.+|..+..... ..+.+.|...+.|. +..+|-.|..++
T Consensus 473 ~g~~----~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p-------~~v~~~l~~i~~n~~e~~EvRiaA~~~l- 540 (574)
T smart00638 473 AGHP----SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP-------RKVQEVLLPIYLNRAEPPEVRMAAVLVL- 540 (574)
T ss_pred cCCh----hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc-------hHHHHHHHHHHcCCCCChHHHHHHHHHH-
Confidence 3221 22222222211 1223466666677664432221 23344444445553 566777776443
Q ss_pred HHHhcccCCCchhHHHHHHHhhhhhcccCChHHHHHHHHHH
Q 000827 1155 HMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAI 1195 (1265)
Q Consensus 1155 ~lal~~~g~~~e~~~~~~ln~l~~~i~~~s~~v~~~~~~a~ 1195 (1265)
+.|. -....+.++.+.++- |++.+|++.++..|
T Consensus 541 ---m~t~--P~~~~l~~ia~~l~~---E~~~QV~sfv~S~l 573 (574)
T smart00638 541 ---METK--PSVALLQRIAELLNK---EPNLQVASFVYSHI 573 (574)
T ss_pred ---HhcC--CCHHHHHHHHHHHhh---cCcHHHHHHhHHhh
Confidence 2221 011233344444432 57788887777654
No 200
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=90.18 E-value=59 Score=40.61 Aligned_cols=142 Identities=16% Similarity=0.187 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhch---HHHHH------------hhccCCC--CchHHHHHHHHHH
Q 000827 529 PYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGL---ATMIA------------AMRPDID--NIDEYVRNTTARA 591 (1265)
Q Consensus 529 p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~Gl---~~~~~------------~L~~~l~--~~d~~vR~~aa~~ 591 (1265)
-|+.-++..+..-+.+-+..+|.+++..++.+++..|. +++++ .|..-.| ...+.+-..+..-
T Consensus 242 ~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~ 321 (993)
T COG5234 242 IYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILF 321 (993)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHH
Confidence 35555666666666777889999998888877777542 22222 2211111 1233344444444
Q ss_pred HHHHHhhhChh--h--HHHHHHHHHcCCch-------hHHHHHHHHHHHHHHHHhCCCcchhHHH-HHHHHHh-hcCCCC
Q 000827 592 FSVVASALGIP--A--LLPFLKAVCQSKKS-------WQARHTGIKIVQQIAILIGCAVLPHLRS-LVEIIEH-GLNDEN 658 (1265)
Q Consensus 592 l~~lA~~lg~~--~--Llp~L~~~l~s~~s-------~~~R~aal~~L~~i~~~~g~~l~p~L~~-ll~~l~~-~L~De~ 658 (1265)
++ +|+.++|. . +.|.+...|.=.++ -..|.++...+-.+-..-...+.+.|.. +.-++.+ .+=|++
T Consensus 322 ~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpe 400 (993)
T COG5234 322 FA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPE 400 (993)
T ss_pred HH-HhhccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCch
Confidence 44 66666532 3 45554443322111 1234443333321111101123344433 3333343 788999
Q ss_pred hhhHHHHHHHHHH
Q 000827 659 QKVRTITALSLAA 671 (1265)
Q Consensus 659 ~~VR~~A~~aL~~ 671 (1265)
..||.+|.-++-.
T Consensus 401 l~vRr~a~Aal~E 413 (993)
T COG5234 401 LNVRRAATAALFE 413 (993)
T ss_pred hhhhhHHHHHHHH
Confidence 9999998766543
No 201
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=67 Score=40.51 Aligned_cols=112 Identities=14% Similarity=0.063 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHhCcccCC
Q 000827 893 ICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYP-EVLGSILGALKAIVNVIGMTKMT 971 (1265)
Q Consensus 893 ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~-~V~~~al~aL~~lv~~~g~~~l~ 971 (1265)
+.|.+--.|++....+-+.|++.+-...-..+.- ..++..+...+.+.+.++.. .-.+.+.-+|.+++--=+.+.+.
T Consensus 642 lypvi~Filkn~i~dfy~Ea~dildg~tf~skeI--~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~ 719 (970)
T COG5656 642 LYPVISFILKNEISDFYQEALDILDGYTFMSKEI--EPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMD 719 (970)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHh--hhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcccccc
Confidence 5566667788888888888888877655433321 24555555666666666553 44666777888887643333322
Q ss_pred --ccHHhHHHHHHHHhcCCCH--HHHHHHHHHHHHHHhh
Q 000827 972 --PPIKDLLPRLTPILKNRHE--KVQENCIDLVGRIADR 1006 (1265)
Q Consensus 972 --p~l~~Llp~Ll~~L~~~~~--~Vre~ai~~ig~Ia~~ 1006 (1265)
-|..-++..+-..+.+.+. .-++.++..+..++-+
T Consensus 720 ~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln 758 (970)
T COG5656 720 AGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILN 758 (970)
T ss_pred ccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHH
Confidence 2334444444455555554 3456677777777766
No 202
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.61 E-value=5.6 Score=50.93 Aligned_cols=199 Identities=14% Similarity=0.204 Sum_probs=90.5
Q ss_pred HHHHHHHhccCC--CHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhhhhhHHH
Q 000827 456 KIMKLLLKVKNG--TPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHK 533 (1265)
Q Consensus 456 ~i~~lll~lkn~--~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~ 533 (1265)
.|..+.-+++++ ....|+.-+.+| ..-|-.+.+..+...+.+..+++.+- ..++..++.....--..++..
T Consensus 363 ~L~~l~~~~~~~~~~~~~r~~~lDal----~~aGT~~av~~i~~~I~~~~~~~~ea---~~~l~~l~~~~~~Pt~e~l~~ 435 (618)
T PF01347_consen 363 DLEELYKQLKSKSKKEQARKIFLDAL----PQAGTNPAVKFIKDLIKSKKLTDDEA---AQLLASLPFHVRRPTEELLKE 435 (618)
T ss_dssp HHHHHHHHHTTS---HHHHHHHHHHH----HHH-SHHHHHHHHHHHHTT-S-HHHH---HHHHHHHHHT-----HHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHhhcCCCCHHHHHH
Confidence 345555555555 333444433333 33455677777888877766665532 233332222111111133333
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHh-chHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhChhhHHHHHHHHH
Q 000827 534 ILVVIEPLLIDEDYYARVEGREIISNLSKAA-GLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVC 612 (1265)
Q Consensus 534 Ll~~i~~lL~ded~~VR~~a~~il~~La~~~-Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~~l 612 (1265)
+..++..-....+..++..+..+++.|+..+ .-..-.....+... .....++++|...+
T Consensus 436 l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~--------------------~~~~~~~~~l~~~l 495 (618)
T PF01347_consen 436 LFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSR--------------------CIIEKYVPYLEQEL 495 (618)
T ss_dssp HHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------S--------------------S--GGGTHHHHHHH
T ss_pred HHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccch--------------------hhHHHHHHHHHHHH
Confidence 3333322122345667777777777776553 11000000000000 00234444444433
Q ss_pred c----CCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCC---ChhhHHHHHHHHHHHHHHhCccchhhhH
Q 000827 613 Q----SKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDE---NQKVRTITALSLAALAEAAAPYGIESFD 685 (1265)
Q Consensus 613 ~----s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De---~~~VR~~A~~aL~~lae~~~p~~~~~~~ 685 (1265)
. ..+ -..+..++++||.+.. +..++.+...+.+. ...+|.+|++|+..++.... +...
T Consensus 496 ~~~~~~~~-~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~----~~v~ 560 (618)
T PF01347_consen 496 KEAVSRGD-EEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP----EKVR 560 (618)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H----HHHH
T ss_pred HHHhhccC-HHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc----HHHH
Confidence 3 222 3567778888885531 24555556666554 67888888888887754432 2334
Q ss_pred HhHHHHHHhhh
Q 000827 686 SVLKPLWKGIR 696 (1265)
Q Consensus 686 ~iL~~L~~~l~ 696 (1265)
.++-+++..-.
T Consensus 561 ~~l~~I~~n~~ 571 (618)
T PF01347_consen 561 EILLPIFMNTT 571 (618)
T ss_dssp HHHHHHHH-TT
T ss_pred HHHHHHhcCCC
Confidence 55555555444
No 203
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=89.59 E-value=36 Score=41.16 Aligned_cols=138 Identities=13% Similarity=0.160 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhch-hhhchHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCC
Q 000827 869 NVMLNGFGAVVNSLGQ-RVKPYLP-QICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEE 946 (1265)
Q Consensus 869 ~~al~aL~~I~~~lg~-~~~p~Lp-~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~ 946 (1265)
..+...|-.++..... ..+.|++ .++-.|+.+++.++++-|+.....+-++......+. .-+...+..+++++..+.
T Consensus 108 ~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r-~~Ir~~i~~~~~~fi~e~ 186 (409)
T PF01603_consen 108 QLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLR-SFIRKSINNIFYRFIYET 186 (409)
T ss_dssp HHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTH-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcCc
Confidence 3444445444443221 1344676 478888999999999999999999888776543332 335566666776666533
Q ss_pred -CHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhhC
Q 000827 947 -YPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHE-KVQENCIDLVGRIADRG 1007 (1265)
Q Consensus 947 -~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~-~Vre~ai~~ig~Ia~~~ 1007 (1265)
.+--.+.++.-++.+++.+....=..+..-+...|+++.+.++. .....-..++..+....
T Consensus 187 ~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd 249 (409)
T PF01603_consen 187 ERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD 249 (409)
T ss_dssp S--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-
T ss_pred ccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Confidence 33445667777777777553211112233344566666666552 22344455555555543
No 204
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=89.49 E-value=2.2 Score=40.91 Aligned_cols=72 Identities=10% Similarity=0.255 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCc---hhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCc
Q 000827 605 LPFLKAVCQSKK---SWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAP 678 (1265)
Q Consensus 605 lp~L~~~l~s~~---s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p 678 (1265)
+.++...+.+.+ +...|..++.+++.+...+|..+..++++|+-++..++.. +..|..|+.|-..+...+.+
T Consensus 13 l~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 13 LAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKE 87 (107)
T ss_pred HHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCH
Confidence 334444444432 4667889999999999988888888999999999999975 45999999999999988864
No 205
>PF05536 Neurochondrin: Neurochondrin
Probab=89.19 E-value=71 Score=40.13 Aligned_cols=159 Identities=14% Similarity=0.193 Sum_probs=102.7
Q ss_pred hchHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHhhcchHH-----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 000827 887 KPYLPQICGTIKWRLNNKSA-KVRQQAADLISRIAVVMKQCHEEQ-----LMGHLGVVLYEYLGEEYPEVLGSILGALKA 960 (1265)
Q Consensus 887 ~p~Lp~ilp~Ll~~L~d~~~-~VR~~A~~~lg~La~~l~~~~~~~-----ll~~L~~~L~~~L~d~~~~V~~~al~aL~~ 960 (1265)
.|-+-..+|.|+.++..... .+-.-|..+|..|+.. +..... -++.|..++.. .+...+.++..+..
T Consensus 93 ~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~--~~G~~aLl~~g~v~~L~ei~~~-----~~~~~E~Al~lL~~ 165 (543)
T PF05536_consen 93 SPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS--PEGAKALLESGAVPALCEIIPN-----QSFQMEIALNLLLN 165 (543)
T ss_pred CHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC--cHhHHHHHhcCCHHHHHHHHHh-----CcchHHHHHHHHHH
Confidence 35556677888888887766 7777777777777731 111111 23444444432 45567778888888
Q ss_pred HHHHhCcccCC---ccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCC---CC-cChHHHHHHHH-HHHHHHhhc-h
Q 000827 961 IVNVIGMTKMT---PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGA---EF-VPAREWMRICF-ELLEMLKAH-K 1031 (1265)
Q Consensus 961 lv~~~g~~~l~---p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~---~~-~~~~e~~~il~-~LL~~Lk~~-~ 1031 (1265)
++...+.+.+. ..+..+++.|...+...+...+-..+..++.+-...+ .. .....|..-+. .+-+.|++. .
T Consensus 166 Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~ 245 (543)
T PF05536_consen 166 LLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLT 245 (543)
T ss_pred HHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCC
Confidence 87776643332 3456777888777777777777778888888876642 11 22225654444 344555554 6
Q ss_pred HHHHHHHHHHHHHHHHhhCcH
Q 000827 1032 KGIRRATVNTFGYIAKAIGPQ 1052 (1265)
Q Consensus 1032 ~~iR~~a~~tlg~Ia~~iGp~ 1052 (1265)
+.-|..+.+..+.+.+..|++
T Consensus 246 ~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 246 PSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHHHHHHHHHHHHhChH
Confidence 788999999999999999875
No 206
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=89.11 E-value=2.5 Score=40.58 Aligned_cols=72 Identities=11% Similarity=0.182 Sum_probs=57.3
Q ss_pred HHHHHHHHcC---CchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCc
Q 000827 605 LPFLKAVCQS---KKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAP 678 (1265)
Q Consensus 605 lp~L~~~l~s---~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p 678 (1265)
+.++...+.+ +++-..|..++.+++.+....|..+..++++++-++..++..+ .+|..|+.|-..+...+.+
T Consensus 13 l~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~ 87 (107)
T PF08064_consen 13 LTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDE 87 (107)
T ss_pred HHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCH
Confidence 3344444444 4456788899999999999777788889999999999888775 8999999999999988865
No 207
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=88.78 E-value=59 Score=38.74 Aligned_cols=228 Identities=15% Similarity=0.162 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHHHHHHHHH--hhcchHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHH
Q 000827 905 SAKVRQQAADLISRIAVVM--KQCHEEQLMGHLGVVLYEYLGEE--YPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPR 980 (1265)
Q Consensus 905 ~~~VR~~A~~~lg~La~~l--~~~~~~~ll~~L~~~L~~~L~d~--~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~ 980 (1265)
+.++-.+|..++|-+...- ..+...+....++....+.+.++ .+.+....++.|.. +.++...+. .....+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~---~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMT---SDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccc---hhhHHH
Confidence 5677788888888776421 11211222222333334444332 34555555555554 233333333 333344
Q ss_pred HHHHhcC-----CCHHHHHHHHHHHHHHHhhCCCC-cChH-HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcHH
Q 000827 981 LTPILKN-----RHEKVQENCIDLVGRIADRGAEF-VPAR-EWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQD 1053 (1265)
Q Consensus 981 Ll~~L~~-----~~~~Vre~ai~~ig~Ia~~~~~~-~~~~-e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~ 1053 (1265)
++..+.+ ....+-...+.++-.+....+.. +... .|.+ .++..+-+..+.+|..|....-.+...+|++.
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~---~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~ 210 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFP---ILFPDLLSSAKDIRTKAISLLLEAKKCLGPNK 210 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhcchHHHHHHHHHHHHHHHHhChhH
Confidence 4443332 22445555566666666553332 1111 2544 34444445677889888877777778888864
Q ss_pred HHH-HHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHhch---hhhhhH
Q 000827 1054 VLA-TLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE--LNVQNGVLKSLSFLFEYIGE---MGKDYI 1127 (1265)
Q Consensus 1054 vlp-~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~--~~vq~~vl~al~~l~~~ig~---~~~~yi 1127 (1265)
.+. .+.+.++..-.+.+.+..+ ...|.......+ ..+-+ +=..+..++ |. ....++
T Consensus 211 ~~s~~~~~~~~~~~~~~~~~~~~--------------~~~L~~mi~~~~~~~~a~~-iW~~~i~LL---~~~~~~~w~~~ 272 (372)
T PF12231_consen 211 ELSKSVLEDLQRSLENGKLIQLY--------------CERLKEMIKSKDEYKLAMQ-IWSVVILLL---GSSRLDSWEHL 272 (372)
T ss_pred HHHHHHHHHhccccccccHHHHH--------------HHHHHHHHhCcCCcchHHH-HHHHHHHHh---CCchhhccHhH
Confidence 333 2222222211111111111 111111111111 01111 111111221 32 234577
Q ss_pred HhHHHHHHHHhccCChhHHHHHHHHHHHHHh
Q 000827 1128 YAVTPLLEDALMDRDLVHRQTAASAVKHMAL 1158 (1265)
Q Consensus 1128 ~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal 1158 (1265)
...+...+.++++.|+.+|..|..+-+.+.-
T Consensus 273 n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 273 NEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999998887754
No 208
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=88.28 E-value=2.5 Score=40.48 Aligned_cols=73 Identities=16% Similarity=0.281 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 000827 866 DDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLY 940 (1265)
Q Consensus 866 ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~ 940 (1265)
.++..++.+++.+++.+|..+..++|||+-.|...|+. ++.|..|+.++..+...+....-..++...+.+++
T Consensus 30 ~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~ 102 (107)
T smart00802 30 NEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEEELGPLLDQIFAAIL 102 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999998875 46999999999988887765322234444444433
No 209
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=88.07 E-value=2.3 Score=42.96 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhhh---ChhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCC----C------------cchh
Q 000827 582 EYVRNTTARAFSVVASAL---GIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGC----A------------VLPH 642 (1265)
Q Consensus 582 ~~vR~~aa~~l~~lA~~l---g~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~----~------------l~p~ 642 (1265)
++||+..+.+++.++... +||++++.+.+.+++. ......++.++..+.+.... . +..+
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~--~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSS--PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 468899999999999885 4999999999998883 46778899999888887653 1 2234
Q ss_pred HHHHHHHHHhhcCCCC----hhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhccc
Q 000827 643 LRSLVEIIEHGLNDEN----QKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHR 699 (1265)
Q Consensus 643 L~~ll~~l~~~L~De~----~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~ 699 (1265)
.+.++..+.+.+.... ..+...+..++......+.....-. ..+++.+++.+.+..
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~~ 139 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSPE 139 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCHH
Confidence 5667777777665532 7778888888888777655432222 247777777775443
No 210
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.76 E-value=9.4 Score=44.62 Aligned_cols=110 Identities=15% Similarity=0.226 Sum_probs=86.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHH
Q 000827 899 WRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLL 978 (1265)
Q Consensus 899 ~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Ll 978 (1265)
..+++.+.+||+.|..-|-++... ....-...+..+.+-+.+...|++..||......+..++...+...+.|++.-++
T Consensus 65 ~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~ 143 (393)
T KOG2149|consen 65 SQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLM 143 (393)
T ss_pred hhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHH
Confidence 778999999999999888877765 1111011233344444455578889999999999999988888888999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCCC
Q 000827 979 PRLTPILKNRHEKVQENCIDLVGRIADRGAE 1009 (1265)
Q Consensus 979 p~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~ 1009 (1265)
+.+..++.+--..+|+-+...+..++..-++
T Consensus 144 ~yi~~AMThit~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 144 PYISSAMTHITPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence 9999998888899999999999999987443
No 211
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.69 E-value=28 Score=40.29 Aligned_cols=168 Identities=12% Similarity=0.124 Sum_probs=92.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh-----------chHHHH
Q 000827 502 PTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAA-----------GLATMI 570 (1265)
Q Consensus 502 ~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~-----------Gl~~~~ 570 (1265)
+..+-++++.++.-+..++..++..-.=+-...+..+...+.+.+..+|..|+.+|+.++... |+.+++
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 344566777777766666655554321111222233333778899999999999999887642 445554
Q ss_pred HhhccCCCCchHHHHHHHHHHHHHHHhhh-----------ChhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCC--
Q 000827 571 AAMRPDIDNIDEYVRNTTARAFSVVASAL-----------GIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGC-- 637 (1265)
Q Consensus 571 ~~L~~~l~~~d~~vR~~aa~~l~~lA~~l-----------g~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~-- 637 (1265)
..+- .+.+..+|..|--+|+.+.+.. |+..|.+.|...- . +.+.+..++..++.+......
T Consensus 173 ~~ls---~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~--~-~~~lkrK~~~Ll~~Ll~~~~s~~ 246 (342)
T KOG2160|consen 173 KILS---SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNN--T-SVKLKRKALFLLSLLLQEDKSDE 246 (342)
T ss_pred HHHc---cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCC--c-chHHHHHHHHHHHHHHHhhhhhh
Confidence 4443 3444568888888888877763 2444444443221 2 244555566666655544321
Q ss_pred Cc-chhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhC
Q 000827 638 AV-LPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAA 677 (1265)
Q Consensus 638 ~l-~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~ 677 (1265)
.+ .++ .+...+.......+..++..+..++..+.....
T Consensus 247 d~~~~~--~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 247 DIASSL--GFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hHHHHh--hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 11 111 011112223333456788888877776665543
No 212
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=87.50 E-value=11 Score=42.93 Aligned_cols=158 Identities=11% Similarity=0.148 Sum_probs=87.6
Q ss_pred HhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCc----ChHHHHHHHH-HHHHHHh--------hc
Q 000827 964 VIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFV----PAREWMRICF-ELLEMLK--------AH 1030 (1265)
Q Consensus 964 ~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~----~~~e~~~il~-~LL~~Lk--------~~ 1030 (1265)
.++...+..+..-++|.++.++.+....+|...+.++..+....+... ....+..++. .+..++- ++
T Consensus 107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~ 186 (282)
T PF10521_consen 107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE 186 (282)
T ss_pred cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh
Confidence 555667778889999999999999999999999999999988632211 1001112222 1222222 22
Q ss_pred hHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCchhHHHHHHH
Q 000827 1031 KKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLK 1110 (1265)
Q Consensus 1031 ~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~vl~ 1110 (1265)
...+-..++-|+-.+++... .-..+.+....+-. +.+. |+..+....+.+...+....++
T Consensus 187 s~~Ll~~ay~~L~~L~~~~~----------~~~~~~r~~~l~~~-----l~e~-----IL~~~~~~~~~~~~~l~~~ll~ 246 (282)
T PF10521_consen 187 SLELLQAAYPALLSLLKTQE----------NDDSNPRSTWLDKI-----LREG-----ILSSMEHESSFSYPRLRTVLLQ 246 (282)
T ss_pred hHHHHHHHHHHHHHHHHhhc----------cCCcccchHHHHHH-----HHHH-----HhhhceeccccCchhHHHHHHH
Confidence 33344444444444433211 00011111112211 1110 1111111112122346667778
Q ss_pred HHHHHHHHhchhhhhhHHhHHHHHHHHhccC
Q 000827 1111 SLSFLFEYIGEMGKDYIYAVTPLLEDALMDR 1141 (1265)
Q Consensus 1111 al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~ 1141 (1265)
.+..++..+|-.+..|+..++|.|...+.+.
T Consensus 247 ~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 247 QLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 8888888888888888999999888776664
No 213
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=87.18 E-value=53 Score=36.37 Aligned_cols=139 Identities=18% Similarity=0.178 Sum_probs=88.4
Q ss_pred HHHHHHhhhcccc-hHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHH
Q 000827 854 DGILYAFQEQTSD-DANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLM 932 (1265)
Q Consensus 854 ~~ll~~l~e~~~e-d~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll 932 (1265)
+.+++.+.+..+. .....+.+|..+ +.... ...+.++.+|..+.+..+...+..+..++.++-..-.. ..
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l---~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r-----~f 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSL---ACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR-----HF 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHH---hccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch-----HH
Confidence 3455555442222 223344444443 33333 67788888888889988888877777776666543222 22
Q ss_pred HHHHHHHHH---------hhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHh-cCCCHHHHHHHHHHHHH
Q 000827 933 GHLGVVLYE---------YLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGR 1002 (1265)
Q Consensus 933 ~~L~~~L~~---------~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L-~~~~~~Vre~ai~~ig~ 1002 (1265)
+.|..++.. .-++...++.-++..++..++..... +-.++++.|...| ++.+..++..+++++..
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~ 148 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAP 148 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 333333333 11233456666767788888876533 5678899999999 67788899999999999
Q ss_pred HHhh
Q 000827 1003 IADR 1006 (1265)
Q Consensus 1003 Ia~~ 1006 (1265)
++..
T Consensus 149 Lc~~ 152 (234)
T PF12530_consen 149 LCEA 152 (234)
T ss_pred HHHH
Confidence 9965
No 214
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.92 E-value=48 Score=40.52 Aligned_cols=111 Identities=18% Similarity=0.258 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHHHHHcC-CchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCC--CChh
Q 000827 584 VRNTTARAFSVVASALGIPALLPFLKAVCQS-KKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLND--ENQK 660 (1265)
Q Consensus 584 vR~~aa~~l~~lA~~lg~~~Llp~L~~~l~s-~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~D--e~~~ 660 (1265)
-|...+.++.-++..+|-.+.+..+...+.. ..+|..-++++.++..++.... |+=+.++|.+.+++.. ++..
T Consensus 368 fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~----~~e~~i~pevl~~i~nlp~Q~~ 443 (559)
T KOG2081|consen 368 FRLKVGDVLKDVAFIIGSDECLKQMYIRLKENNASWEEVEAALFILRAVAKNVS----PEENTIMPEVLKLICNLPEQAP 443 (559)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCC----ccccchHHHHHHHHhCCccchh
Confidence 5666777777777777755555544444433 4469999999999997776544 4444455555544433 5566
Q ss_pred hHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhccc
Q 000827 661 VRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHR 699 (1265)
Q Consensus 661 VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~ 699 (1265)
+|.+++.-+|.+.+++..+ .+..+.++..++.++..++
T Consensus 444 ~~~ts~ll~g~~~ew~~~~-p~~le~v~~~~~~~~~~~~ 481 (559)
T KOG2081|consen 444 LRYTSILLLGEYSEWVEQH-PELLEPVLRYIRQGLQLKR 481 (559)
T ss_pred HHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHhhhcc
Confidence 9999999999999998643 2445566777777776655
No 215
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=86.79 E-value=7.1 Score=40.65 Aligned_cols=116 Identities=11% Similarity=0.134 Sum_probs=77.4
Q ss_pred hhchHHHHHHHHHHHhcCCC------------------HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCC
Q 000827 886 VKPYLPQICGTIKWRLNNKS------------------AKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEY 947 (1265)
Q Consensus 886 ~~p~Lp~ilp~Ll~~L~d~~------------------~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~ 947 (1265)
+.|+|++++|.|..-+.=.. -.+|.+|.+++-.+-.. |...--+..+...+...|+| .
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~---~~~~~~~~~~~~~v~~GL~D-~ 78 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDT---CLSRIDISEFLDRVEAGLKD-E 78 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHS---TCSSS-HHHHHHHHHHTTSS--
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHhhcCC-c
Confidence 45788889988886554211 37999999999887763 33211244556667778888 8
Q ss_pred HHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcC----CC--------HHHHHHHHHHHHHHHhh
Q 000827 948 PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKN----RH--------EKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 948 ~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~----~~--------~~Vre~ai~~ig~Ia~~ 1006 (1265)
.+|+--++..|..++... +..+.+.++.+++.+-..|+. .. .....+++.++..|...
T Consensus 79 ~DIk~L~~~~l~kl~~~~-p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~ 148 (169)
T PF08623_consen 79 HDIKMLCHLMLSKLAQLA-PEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSK 148 (169)
T ss_dssp HHHHHHHHHHHHHHHHS--HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HS
T ss_pred HHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 899998888999987654 445555677777777776642 21 34567888888888555
No 216
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=86.74 E-value=1.2 Score=34.57 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000827 893 ICGTIKWRLNNKSAKVRQQAADLISRIA 920 (1265)
Q Consensus 893 ilp~Ll~~L~d~~~~VR~~A~~~lg~La 920 (1265)
.+|.|+.+|++.+..||..|+|+|+.|+
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6788889999999999999999999886
No 217
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=86.66 E-value=95 Score=39.54 Aligned_cols=105 Identities=18% Similarity=0.240 Sum_probs=59.6
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCc--ccCC-cc
Q 000827 899 WRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHL--GVVLYEYLGEEYPEVLGSILGALKAIVNVIGM--TKMT-PP 973 (1265)
Q Consensus 899 ~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L--~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~--~~l~-p~ 973 (1265)
..|....+.|+..|+-.+..++.--.+. ..-...| ++.|...|.....+|+..+|+||.+++-.-.. ..+. ++
T Consensus 240 ~mL~~q~~~~qsnaaaylQHlcfgd~~i--k~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~ 317 (717)
T KOG1048|consen 240 SMLMSQDPSVQSNAAAYLQHLCFGDNKI--KSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKE 317 (717)
T ss_pred HHHhccChhhhHHHHHHHHHHHhhhHHH--HHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhh
Confidence 5556667777777777766665311000 0011111 12234456778899999999999999843222 2222 12
Q ss_pred HHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhh
Q 000827 974 IKDLLPRLTPILKN-RHEKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 974 l~~Llp~Ll~~L~~-~~~~Vre~ai~~ig~Ia~~ 1006 (1265)
. .=+|.++..|+. .+..||+.+..++-.|.++
T Consensus 318 ~-~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 318 L-NGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred c-CChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 2 235667777775 5567777766555555443
No 218
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=86.60 E-value=14 Score=39.81 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=48.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcHHHHHHH
Q 000827 983 PILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATL 1058 (1265)
Q Consensus 983 ~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~L 1058 (1265)
..|+-+-...-..++..++.+....+....+. +.+++..+-++-.++....|..+-.|+|...+++||+.|+..|
T Consensus 7 ~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~-l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~l 81 (198)
T PF08161_consen 7 SLLSYRYQHAWPEVLNVLSALFEKLGERSSPL-LKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSIL 81 (198)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHhhhccHH-HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHC
Confidence 33433334455666677776666633222222 4556655555545556788999999999999999999887654
No 219
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.19 E-value=9.3 Score=47.02 Aligned_cols=109 Identities=20% Similarity=0.259 Sum_probs=85.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccC
Q 000827 896 TIKWRLNNKSAKVRQQAADLISRIAVVMKQCHE-----EQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKM 970 (1265)
Q Consensus 896 ~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~-----~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l 970 (1265)
.+..+|++.+.-.|-..+++++.++.......+ .+-++.|+.++.+.+.|.+|-+|..++..+..|.+-- ..+
T Consensus 303 ~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~--sk~ 380 (1128)
T COG5098 303 HFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN--SKT 380 (1128)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc--ccc
Confidence 345889999999999999999999886654321 3457778888999999999999999999998887632 122
Q ss_pred CccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000827 971 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 971 ~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~ 1006 (1265)
..--.++.......|+++...||.+|+.++..+...
T Consensus 381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 223356777788889999999999999999987654
No 220
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=85.81 E-value=1.1e+02 Score=38.71 Aligned_cols=235 Identities=15% Similarity=0.170 Sum_probs=118.4
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHH
Q 000827 812 RIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLP 891 (1265)
Q Consensus 812 ~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp 891 (1265)
.....+++..-+++-.++.++.-++......+.-+.+.+..+..++..-.+.. ....-+.+..+++.....+.||-+
T Consensus 503 ~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~fe---iD~LS~vMe~fVe~fseELspfa~ 579 (970)
T COG5656 503 NTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFE---IDPLSMVMESFVEYFSEELSPFAP 579 (970)
T ss_pred HHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccccc---chHHHHHHHHHHHHhHHhhchhHH
Confidence 34445566666777777777766665542221112223333333332221111 123345566777777788888888
Q ss_pred HHHHHHHH--------HhcCC---CHHHHHHHHHHHHH---HHHHH-hhcchHHHHHHHHHHHHHh----hCCCCHHHHH
Q 000827 892 QICGTIKW--------RLNNK---SAKVRQQAADLISR---IAVVM-KQCHEEQLMGHLGVVLYEY----LGEEYPEVLG 952 (1265)
Q Consensus 892 ~ilp~Ll~--------~L~d~---~~~VR~~A~~~lg~---La~~l-~~~~~~~ll~~L~~~L~~~----L~d~~~~V~~ 952 (1265)
+++..|.. .+.++ ...|-..-+.++|- +...+ .-.....+|..+...+++. |..+-.++-.
T Consensus 580 eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~ 659 (970)
T COG5656 580 ELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQ 659 (970)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 87766654 23333 22232222333333 32221 1111133555555544432 2333334444
Q ss_pred HHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhhCC-CCcChHHHHHHHHHHH-HHHhh
Q 000827 953 SILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHE-KVQENCIDLVGRIADRGA-EFVPAREWMRICFELL-EMLKA 1029 (1265)
Q Consensus 953 ~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~-~Vre~ai~~ig~Ia~~~~-~~~~~~e~~~il~~LL-~~Lk~ 1029 (1265)
-+|.-+..+.-. ...+.|.+-.|...+.+++++... ..-+.+..++..+...|+ +|...-.+..+|..+. .++.+
T Consensus 660 Ea~dildg~tf~--skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~s 737 (970)
T COG5656 660 EALDILDGYTFM--SKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCS 737 (970)
T ss_pred HHHHHHhhhhHH--HHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcc
Confidence 444444433321 223456666667777777666553 345677788888887754 4433333556776655 34444
Q ss_pred chH--HHHHHHHHHHHHHHHhhCc
Q 000827 1030 HKK--GIRRATVNTFGYIAKAIGP 1051 (1265)
Q Consensus 1030 ~~~--~iR~~a~~tlg~Ia~~iGp 1051 (1265)
+.. .-+..+++.+..++-+++.
T Consensus 738 E~n~l~D~~~vc~i~e~l~Ln~rd 761 (970)
T COG5656 738 EENFLEDFIGVCRIIESLILNIRD 761 (970)
T ss_pred hhhhHHHHHHHHHHHHHHHHHccc
Confidence 432 4566667777777766654
No 221
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=85.72 E-value=6.6 Score=45.71 Aligned_cols=117 Identities=18% Similarity=0.255 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc-hhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHHH
Q 000827 846 ARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLG-QRVKPYLPQICGTIKWRLNNKSAKVRQQAADLIS--RIAVV 922 (1265)
Q Consensus 846 ~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg-~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg--~La~~ 922 (1265)
.++.+.++.+++..+--..+.-.-..++-++.|.+.+. ..|+.....+...|-.|++.+|..|-+.|+..+. .|...
T Consensus 294 ~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~L 373 (457)
T KOG2085|consen 294 PKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSL 373 (457)
T ss_pred ccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHH
Confidence 45677888888877743222111256677777777776 3565555666666679999999999998876654 22222
Q ss_pred HhhcchHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHH
Q 000827 923 MKQCHEEQLMGHLGVVLYEYLGE-EYPEVLGSILGALKAIVN 963 (1265)
Q Consensus 923 l~~~~~~~ll~~L~~~L~~~L~d-~~~~V~~~al~aL~~lv~ 963 (1265)
+.. ..+.+++.+.+.|+..-.. -+..|.+-++.+++.+.+
T Consensus 374 i~~-n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~e 414 (457)
T KOG2085|consen 374 ISQ-NAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFME 414 (457)
T ss_pred HHh-ccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2244677777777654332 245666667777776665
No 222
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.67 E-value=1.8e+02 Score=40.95 Aligned_cols=176 Identities=17% Similarity=0.214 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHhch-hhhch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCC
Q 000827 869 NVMLNGFGAVVNSLGQ-RVKPY--LPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGE 945 (1265)
Q Consensus 869 ~~al~aL~~I~~~lg~-~~~p~--Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d 945 (1265)
.+...+++.+++..+. .+.|. -.--.-.+...|.++++..|-.+..+++|++...+. ..++..+.+.++..+.+
T Consensus 850 ~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~---~~f~a~~aq~~fdklas 926 (2067)
T KOG1822|consen 850 QALLSALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGS---APFVASLAQNSFDKLAS 926 (2067)
T ss_pred HHHHHHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHh
Confidence 4555666666665442 11111 111223455778889999999999999999998764 33566677777777765
Q ss_pred CC-HHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHH
Q 000827 946 EY-PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHE-KVQENCIDLVGRIADRGAEFVPAREWMRICFEL 1023 (1265)
Q Consensus 946 ~~-~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~-~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~L 1023 (1265)
.. +--|..-.-|++.+-..+|.-.=..++..-+..|+..-+|.+. .||.-++.++..|+..++... |+-+++.+
T Consensus 927 ~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~----~~~ve~tl 1002 (2067)
T KOG1822|consen 927 ARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMF----RVLVEPTL 1002 (2067)
T ss_pred cCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCcee----hhhHHHHH
Confidence 43 3345555666666666655432234556656667777777775 899999999999998844322 22333322
Q ss_pred ---HHHHhh---chHHHHHHHHHHHH------HHHHhhCc
Q 000827 1024 ---LEMLKA---HKKGIRRATVNTFG------YIAKAIGP 1051 (1265)
Q Consensus 1024 ---L~~Lk~---~~~~iR~~a~~tlg------~Ia~~iGp 1051 (1265)
+.+|-. ...+++.+-.+|+. .+..++||
T Consensus 1003 sl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgp 1042 (2067)
T KOG1822|consen 1003 SLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGP 1042 (2067)
T ss_pred HHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhccc
Confidence 233222 14555655555555 55555554
No 223
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=85.36 E-value=95 Score=37.54 Aligned_cols=144 Identities=17% Similarity=0.143 Sum_probs=75.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHHhCcccCCccH--
Q 000827 898 KWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGE-EYPEVLGSILGALKAIVNVIGMTKMTPPI-- 974 (1265)
Q Consensus 898 l~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d-~~~~V~~~al~aL~~lv~~~g~~~l~p~l-- 974 (1265)
+.+|+..+.-|...|+..++.++.+-........+..+...+...+.. ...+.+..++.+|..+...= .++..+
T Consensus 107 l~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~---~~R~~f~~ 183 (429)
T cd00256 107 FNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD---EYRFAFVL 183 (429)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc---hHHHHHHH
Confidence 346677888999999999998876422211122333344444444432 22445555667777765421 111100
Q ss_pred HhHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhh--CCCCcChHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHH
Q 000827 975 KDLLPRLTPILKNRH--EKVQENCIDLVGRIADR--GAEFVPAREWMRICFELLEMLKAH-KKGIRRATVNTFGYIAK 1047 (1265)
Q Consensus 975 ~~Llp~Ll~~L~~~~--~~Vre~ai~~ig~Ia~~--~~~~~~~~e~~~il~~LL~~Lk~~-~~~iR~~a~~tlg~Ia~ 1047 (1265)
...++.|.++|+... -..+-.++-|+-.+.-. +.+..... .+++.+++.++.. +..+=|.++.+|-.+..
T Consensus 184 ~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~---~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 184 ADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRL---SLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred ccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 224566666666533 35566777777766544 22222222 5566666666654 22333344555555443
No 224
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=85.07 E-value=59 Score=38.16 Aligned_cols=96 Identities=13% Similarity=0.102 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhhcccch-HHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH----HH
Q 000827 849 EELLIDGILYAFQEQTSDD-ANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAV----VM 923 (1265)
Q Consensus 849 ~~~ll~~ll~~l~e~~~ed-~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~----~l 923 (1265)
...++.++...++.+.+|. ....+.+|+.-+..++. ..-+.++..+.+.++|+.+-||..-+..+|.+.. .-
T Consensus 20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~---~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~ 96 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSS---ELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD 96 (339)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCc---CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch
Confidence 3455666666665555554 34455555554444422 2335688888899999999999998888888765 11
Q ss_pred hhcchHHHHHHHHHHHHHhhCCCC
Q 000827 924 KQCHEEQLMGHLGVVLYEYLGEEY 947 (1265)
Q Consensus 924 ~~~~~~~ll~~L~~~L~~~L~d~~ 947 (1265)
...+-..+++.|...+-+....+.
T Consensus 97 ~~~~~~~~~~~L~~~~~~~~~~p~ 120 (339)
T PF12074_consen 97 SLKFAEPFLPKLLQSLKEASANPL 120 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 111223456666666555444443
No 225
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=84.78 E-value=6.7 Score=36.54 Aligned_cols=85 Identities=15% Similarity=0.113 Sum_probs=65.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccH
Q 000827 895 GTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPI 974 (1265)
Q Consensus 895 p~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l 974 (1265)
...+..++|+.+-||..+...|.++...-. ....-.+.+..+++..+.|+++-|=-+++.+|..++....
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-------- 75 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-------- 75 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh--------
Confidence 445578899999999999999888886433 1123457788888889999999999999999999998752
Q ss_pred HhHHHHHHHHhcCCC
Q 000827 975 KDLLPRLTPILKNRH 989 (1265)
Q Consensus 975 ~~Llp~Ll~~L~~~~ 989 (1265)
+.+++.|++...+.+
T Consensus 76 ~~vl~~L~~~y~~~~ 90 (92)
T PF10363_consen 76 DEVLPILLDEYADPS 90 (92)
T ss_pred HHHHHHHHHHHhCcc
Confidence 457888887766543
No 226
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=84.43 E-value=15 Score=38.05 Aligned_cols=93 Identities=13% Similarity=0.173 Sum_probs=56.7
Q ss_pred hChhhHHHHHHHHHcCCchhHHHHHHHHHHHHHH-HHhCCCcchhHHHHHHHHHhhcCCCC-hhh--HHHHHHH-HHHHH
Q 000827 599 LGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIA-ILIGCAVLPHLRSLVEIIEHGLNDEN-QKV--RTITALS-LAALA 673 (1265)
Q Consensus 599 lg~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~-~~~g~~l~p~L~~ll~~l~~~L~De~-~~V--R~~A~~a-L~~la 673 (1265)
.+|++|..++.....+.. ..|+.++..+. ...|..+.|++..+++.+.+.|.++. ..| ...|+.+ ++...
T Consensus 42 ~~W~eL~d~Ils~~~~e~-----~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~I 116 (174)
T PF04510_consen 42 GGWDELSDCILSLSENEP-----VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAI 116 (174)
T ss_pred CCchhHHHHHHHhhccch-----HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHH
Confidence 359999999887653321 45888888777 44566788999999999999998863 333 3344432 23233
Q ss_pred HHhCccc-hhhhHHhHHHHHHhhh
Q 000827 674 EAAAPYG-IESFDSVLKPLWKGIR 696 (1265)
Q Consensus 674 e~~~p~~-~~~~~~iL~~L~~~l~ 696 (1265)
..+.... .+.+..+++.+++.++
T Consensus 117 ql~e~~~~~~~vk~L~~~mv~Sv~ 140 (174)
T PF04510_consen 117 QLLESSMRVDLVKELLPKMVKSVK 140 (174)
T ss_pred HHhccccHHHHHHHHHHHHHHHHH
Confidence 3322211 2344555555555444
No 227
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=83.92 E-value=1.2e+02 Score=37.55 Aligned_cols=140 Identities=15% Similarity=0.177 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHhhcchHHHH----HHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHH
Q 000827 909 RQQAADLISRIAVVMKQCHEEQLM----GHLGVVLYEYLGEEYPE-VLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTP 983 (1265)
Q Consensus 909 R~~A~~~lg~La~~l~~~~~~~ll----~~L~~~L~~~L~d~~~~-V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~ 983 (1265)
-..-||+||.|+..|....+..++ ..|+..+.-.-+..+.. |.+++...++..-.-+..+| .+++.++.+|.+
T Consensus 500 lNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw--~FLkTVv~KLFE 577 (1053)
T COG5101 500 LNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHW--SFLKTVVKKLFE 577 (1053)
T ss_pred HhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHHH--HHHHHHHHHHHH
Confidence 345677777777766654433333 33333222222333333 33334333333221111111 467888899999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhCC-CCcChH--HHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHhhC
Q 000827 984 ILKNRHEKVQENCIDLVGRIADRGA-EFVPAR--EWMRICFELLEMLKA----HKKGIRRATVNTFGYIAKAIG 1050 (1265)
Q Consensus 984 ~L~~~~~~Vre~ai~~ig~Ia~~~~-~~~~~~--e~~~il~~LL~~Lk~----~~~~iR~~a~~tlg~Ia~~iG 1050 (1265)
-....|+.|+.-||++|-.|+...+ +|+... +-.+.+..++..|.. -.+.-....+++.|.+.....
T Consensus 578 FMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p 651 (1053)
T COG5101 578 FMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVP 651 (1053)
T ss_pred HHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHHHhccc
Confidence 9999999999999999999987633 443222 122344444444432 245556667888888876654
No 228
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.91 E-value=8.4 Score=40.91 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=53.0
Q ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000827 856 ILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVV 922 (1265)
Q Consensus 856 ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~ 922 (1265)
+...+.+...+-+-.+-+++..+....|..+-|.|||++..|...|...+-+|-..+..+|.+|+..
T Consensus 119 F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~ 185 (262)
T KOG3961|consen 119 FFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVS 185 (262)
T ss_pred HhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 3333444344445677788888888889999999999999999999999999999888888887753
No 229
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=83.78 E-value=18 Score=44.91 Aligned_cols=115 Identities=12% Similarity=0.178 Sum_probs=77.4
Q ss_pred HHHHHHHHhhCCC--CHHHHHHHHHHH---HHHHHHhCcccCCccHHhHHHHHHHHhc--------CCCHHHHHHHHHHH
Q 000827 934 HLGVVLYEYLGEE--YPEVLGSILGAL---KAIVNVIGMTKMTPPIKDLLPRLTPILK--------NRHEKVQENCIDLV 1000 (1265)
Q Consensus 934 ~L~~~L~~~L~d~--~~~V~~~al~aL---~~lv~~~g~~~l~p~l~~Llp~Ll~~L~--------~~~~~Vre~ai~~i 1000 (1265)
....++...+... +..++..++.-+ ......++...+...-+.|+..+.+.+. +.....|..++++|
T Consensus 319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~l 398 (501)
T PF13001_consen 319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETL 398 (501)
T ss_pred cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHH
Confidence 3344444444444 556666666666 5666555544444334445555555563 12467899999999
Q ss_pred HHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhC
Q 000827 1001 GRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIG 1050 (1265)
Q Consensus 1001 g~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iG 1050 (1265)
|.|++..+..+... +.++..|++.|..+..++|.+.-+|++.++.++.
T Consensus 399 G~L~~~~p~l~~~d--~~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 399 GLLAKRAPSLFSKD--LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred HHHHccCccccccc--HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 99999976655332 3677778888888899999999999999988764
No 230
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=81.74 E-value=80 Score=37.05 Aligned_cols=85 Identities=20% Similarity=0.211 Sum_probs=59.0
Q ss_pred HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----h-
Q 000827 975 KDLLPRLTPILK-NRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAK----A- 1048 (1265)
Q Consensus 975 ~~Llp~Ll~~L~-~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~----~- 1048 (1265)
..++..+.+.+. ..|+......+.+|+.=....+..++. .++..+.+-+++.+..+|+.-+.++|.+.. .
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~----~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~ 96 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPK----KVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD 96 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCH----HHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch
Confidence 556666666654 467888888899988766654333443 466667777888888899999999999875 1
Q ss_pred hC--cHHHHHHHHHhhc
Q 000827 1049 IG--PQDVLATLLNNLK 1063 (1265)
Q Consensus 1049 iG--p~~vlp~Ll~~L~ 1063 (1265)
.. ...++|.|++.++
T Consensus 97 ~~~~~~~~~~~L~~~~~ 113 (339)
T PF12074_consen 97 SLKFAEPFLPKLLQSLK 113 (339)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 11 1357888877654
No 231
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=81.59 E-value=14 Score=37.27 Aligned_cols=78 Identities=13% Similarity=0.131 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchH-----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 000827 890 LPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEE-----QLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNV 964 (1265)
Q Consensus 890 Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~-----~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~ 964 (1265)
-...+..|...|++.++.|...|+.++..++...+..|+. .++..|..++...-......|+..++..+......
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 3567788889999999999999999999988877766653 35666666554322222122999999999999988
Q ss_pred hCc
Q 000827 965 IGM 967 (1265)
Q Consensus 965 ~g~ 967 (1265)
++.
T Consensus 120 f~~ 122 (140)
T PF00790_consen 120 FKS 122 (140)
T ss_dssp TTT
T ss_pred HCC
Confidence 854
No 232
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=80.98 E-value=1.4e+02 Score=36.37 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHh
Q 000827 907 KVRQQAADLISRIAVVMKQCHEEQLMGHLG-VVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPIL 985 (1265)
Q Consensus 907 ~VR~~A~~~lg~La~~l~~~~~~~ll~~L~-~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L 985 (1265)
+-|-.|+.+||.++..+.... +..+. ++|..+|...+.--|-.++-.+.+.+.......-.+....+.+.|..+|
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~----~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESS----LQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 568889999999998764321 22222 2455666766665566666667777766544333333567788888888
Q ss_pred cCCC-----------HHHHHHHHHHHHHHHhhCC
Q 000827 986 KNRH-----------EKVQENCIDLVGRIADRGA 1008 (1265)
Q Consensus 986 ~~~~-----------~~Vre~ai~~ig~Ia~~~~ 1008 (1265)
.+.. .++|..|-.++..+...|-
T Consensus 178 ~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~ 211 (441)
T PF12054_consen 178 ENPEPPYYDELVPSLKRLRTECQQLLATFRDVGK 211 (441)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8432 3578888888888777644
No 233
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=80.84 E-value=27 Score=35.58 Aligned_cols=74 Identities=18% Similarity=0.164 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchH-----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHh
Q 000827 891 PQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEE-----QLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI 965 (1265)
Q Consensus 891 p~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~-----~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~ 965 (1265)
...+..|...|+++++.|...|..++..+++..+..|+. .+++.|..++... ..+.|+..++.-+......+
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~---~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR---VHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHHh
Confidence 457778889999999999999999999998887766653 3555555554322 57889999999999998888
Q ss_pred Cc
Q 000827 966 GM 967 (1265)
Q Consensus 966 g~ 967 (1265)
..
T Consensus 113 ~~ 114 (144)
T cd03568 113 KN 114 (144)
T ss_pred CC
Confidence 53
No 234
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=80.58 E-value=2.7e+02 Score=39.26 Aligned_cols=100 Identities=21% Similarity=0.257 Sum_probs=57.5
Q ss_pred HHHHHHHHHhccCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhhhhhHHH
Q 000827 454 ERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHK 533 (1265)
Q Consensus 454 ~~~i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~ 533 (1265)
.+.|...|++|-..+ ....+++.|...-..- ..+...+|..|.+-.++.+. .-++-+.++..+...-...++.
T Consensus 209 q~eiI~~LPeIl~ds--~h~~v~~~L~~ll~~~--~~L~~~iLd~Ls~L~Ls~~~---l~~vr~~vl~~L~s~~~e~LP~ 281 (1426)
T PF14631_consen 209 QKEIISSLPEILDDS--QHDEVVEELLELLQEN--PELTVPILDALSNLNLSPEL---LEEVREKVLEKLSSVDLEDLPV 281 (1426)
T ss_dssp HHHHHHTHHHHS-GG--GHHHHHHHHHHHHHH---STTHHHHHHHHHHS---HHH---HHHHHHHHHHSTTSS-TTHHHH
T ss_pred HHHHHHHHHHHhcch--hHHHHHHHHHHHHhcC--CchhhhHHHHHhcCCCCHHH---HHHHHHHHHHHHhcCChhhhHH
Confidence 345888888876554 3356667776665442 24677888888887788764 3345555556666554566777
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHhch
Q 000827 534 ILVVIEPLLIDEDYYARVEGREIISNLSKAAGL 566 (1265)
Q Consensus 534 Ll~~i~~lL~ded~~VR~~a~~il~~La~~~Gl 566 (1265)
|+..|..-.+..+ +.++|+.|-+...+
T Consensus 282 lirFLL~s~t~~d------a~evI~~LR~~L~~ 308 (1426)
T PF14631_consen 282 LIRFLLQSITPSD------AVEVISELRENLDF 308 (1426)
T ss_dssp HHHHHHHS-SSTT------HHHHHHHHHHHHH-
T ss_pred HHHHHHHhCCccc------HHHHHHHHHHHccc
Confidence 7777766555444 35566666555443
No 235
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.20 E-value=2.5e+02 Score=38.74 Aligned_cols=103 Identities=11% Similarity=0.163 Sum_probs=68.6
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHh----hhcccchHHHHHHHHHHHHHHhchhh
Q 000827 811 GRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAF----QEQTSDDANVMLNGFGAVVNSLGQRV 886 (1265)
Q Consensus 811 ~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l----~e~~~ed~~~al~aL~~I~~~lg~~~ 886 (1265)
..+...+.-+++..+..++..+..++.....+. ...+++.....+ -+....+|......+..+...++..+
T Consensus 44 ~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~-----~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 44 DIIVKKLLKRDETTKIKALQELSELIDTSDTEE-----LKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred HHHHHHHhccChHHHHHHHHhHHHhcccccchH-----HhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555567777777777776665443221 111222222222 22334457778888999999999999
Q ss_pred hchHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000827 887 KPYLPQICGTIKWRLNNKSAKVRQQAADLISR 918 (1265)
Q Consensus 887 ~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~ 918 (1265)
.|||..++|..+-...|....|-.+|...+-.
T Consensus 119 sp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~ 150 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQFDLDYPVSEAAKASFKD 150 (1312)
T ss_pred hHHHHhhhhhhhheecccchHHHHHHHHHHHh
Confidence 99999999999988899988888887766543
No 236
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=80.18 E-value=1.4e+02 Score=35.64 Aligned_cols=213 Identities=17% Similarity=0.224 Sum_probs=117.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH-----HHHHhhC-CC-CHHHHHHHHHHHHHHHHHh
Q 000827 893 ICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGV-----VLYEYLG-EE-YPEVLGSILGALKAIVNVI 965 (1265)
Q Consensus 893 ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~-----~L~~~L~-d~-~~~V~~~al~aL~~lv~~~ 965 (1265)
+.+.+...+-+.+..||.++..++--+... ...+..+.. .+..+|. +. +..=|+.|++-+..+++.-
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d------~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~ 99 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISD------EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK 99 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcC------HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc
Confidence 333333333344499999988876554431 111111111 2223333 22 2234778888888888763
Q ss_pred C-cccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 000827 966 G-MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGY 1044 (1265)
Q Consensus 966 g-~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~ 1044 (1265)
+ ... .-..++..++.+..+.+.+.|..|+.++..|+-..++.+..- .-+..+++.+-+...++-.+.+.+|-.
T Consensus 100 ~~~~~---~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~---gG~~~L~~~l~d~~~~~~~~l~~~lL~ 173 (371)
T PF14664_consen 100 KGPKE---IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAEC---GGIRVLLRALIDGSFSISESLLDTLLY 173 (371)
T ss_pred CCccc---CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHc---CCHHHHHHHHHhccHhHHHHHHHHHHH
Confidence 2 222 236789999999999999999999999999886644321110 111223333333322233333444444
Q ss_pred HHHhh------CcH----HHHHHHHHhh---cccchh--hHHHHHHHHHHHHhhc-C------C-cccHHHHHhhcCCCc
Q 000827 1045 IAKAI------GPQ----DVLATLLNNL---KVQERQ--NRVCTTVAIAIVAETC-S------P-FTVLPALMNEYRVPE 1101 (1265)
Q Consensus 1045 Ia~~i------Gp~----~vlp~Ll~~L---~~~e~~--~R~~~~~ai~~l~e~~-g------p-~~vlPaL~~~~~~~~ 1101 (1265)
+...- .+. .++..+.+.- ...+.+ .-.++..+|..+.+.- | + +.-+-.|++.++.|.
T Consensus 174 lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~ 253 (371)
T PF14664_consen 174 LLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN 253 (371)
T ss_pred HhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC
Confidence 33221 111 1222222220 111221 2245677777777643 2 2 466778999999998
Q ss_pred hhHHHHHHHHHHHHHH
Q 000827 1102 LNVQNGVLKSLSFLFE 1117 (1265)
Q Consensus 1102 ~~vq~~vl~al~~l~~ 1117 (1265)
..+++.++..|-.+|.
T Consensus 254 ~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 254 PEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHHHHHHHHHHHHC
Confidence 8899999988877763
No 237
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=79.27 E-value=23 Score=38.31 Aligned_cols=148 Identities=14% Similarity=0.197 Sum_probs=86.2
Q ss_pred cCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhcCCCCCHHHH-HHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhcc
Q 000827 465 KNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQER-HLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLI 543 (1265)
Q Consensus 465 kn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~~~led~~R-~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ 543 (1265)
.++....|..|+-.+......+.. ..+..+-..+ ...-+|..- ..+.++++. .+..+ +.+.+.+..-+.
T Consensus 61 ~~~~~E~~~la~~il~~~~~~~~~-~~~~~~~~~~-~~~~~W~~~D~~~~~~~~~-------~~~~~-~~~~~~~~~W~~ 130 (213)
T PF08713_consen 61 ESGYREERYLALLILDKRRKKLTE-EDLELLEKWL-PDIDNWATCDSLCSKLLGP-------LLKKH-PEALELLEKWAK 130 (213)
T ss_dssp CSSCHHHHHHHHHHHHHCGGG--H-HHHHHHHHCC-CCCCCHHHHHHHTHHHHHH-------HHHHH-GGHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhHHHhhhhhH-HHHHHHHHHh-ccCCcchhhhHHHHHHHHH-------HHHhh-HHHHHHHHHHHh
Confidence 666666777777666554333221 2222222222 233355421 111223322 22222 446667777778
Q ss_pred CCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhChhhHHHHHHHHHcCCchhHHHHH
Q 000827 544 DEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHT 623 (1265)
Q Consensus 544 ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~~l~s~~s~~~R~a 623 (1265)
+++..+|..|..++....+...++.+...+...+.+++.+||++.+-+|..++... .+.+.+||.+....-+.|..|++
T Consensus 131 s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~-~~~v~~~l~~~~~~~~~~~~r~A 209 (213)
T PF08713_consen 131 SDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD-PDEVLEFLQKNSDRLSRWTLRYA 209 (213)
T ss_dssp CSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT--HHHHHHHHHHS-----HHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC-HHHHHHHHHHCcccCchhHHHHH
Confidence 89999998876666555555455667777888889999999999999999887663 67788898875433333555553
No 238
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=79.16 E-value=2.9e+02 Score=38.88 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=71.1
Q ss_pred HhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 000827 881 SLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKA 960 (1265)
Q Consensus 881 ~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~ 960 (1265)
.-+.-++.|++.++...-.+|..+++.|++-+..+...+-..+..-...+++..|+..+.. ....+| .+++..|..
T Consensus 424 ~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~s---g~~~ev-~~aL~vL~~ 499 (1426)
T PF14631_consen 424 GHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGS---GNSQEV-DAALDVLCE 499 (1426)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH-----HHHH-HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcC---CcHHHH-HHHHHHHHH
Confidence 3345578899999999999999999999999888776665543211113456666555422 222344 678888888
Q ss_pred HHHHhCcccCCccHHhHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhh
Q 000827 961 IVNVIGMTKMTPPIKDLLPRLTPILKNRH-EKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 961 lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~-~~Vre~ai~~ig~Ia~~ 1006 (1265)
++..- ...+.||.. ++..+++.+.+=+ ..+|. ....++.++-.
T Consensus 500 L~~~~-~~~l~~fa~-~l~giLD~l~~Ls~~qiR~-lf~il~~La~~ 543 (1426)
T PF14631_consen 500 LAEKN-PSELQPFAT-FLKGILDYLDNLSLQQIRK-LFDILCTLAFS 543 (1426)
T ss_dssp HHHH--HHHHHHTHH-HHHGGGGGGGG--HHHHHH-HHHHHHHHHHH
T ss_pred HHhcc-HHHHHHHHH-HHHHHHHHHhcCCHHHHHH-HHHHHHHHhcC
Confidence 88754 334555533 3333444454433 33443 46777777754
No 239
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.04 E-value=4e+02 Score=40.30 Aligned_cols=199 Identities=16% Similarity=0.170 Sum_probs=109.6
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHHh----hCCCCchhHHHHHHHHHHHHHhhh-cccch---HHHHHHHHHHHHH
Q 000827 809 IVGRIVEDLKDESEPYRRMVMETIEKVVAN----LGASDIDARLEELLIDGILYAFQE-QTSDD---ANVMLNGFGAVVN 880 (1265)
Q Consensus 809 il~~i~~~l~d~~~~vR~~a~~~l~~ii~~----lg~~~~~~~~~~~ll~~ll~~l~e-~~~ed---~~~al~aL~~I~~ 880 (1265)
+++.+...+..++..++.....++..+... +|..+. ....++...++..+-. -..+. +...+.+++.+++
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~--~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPER--AFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcch--hhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 466677777777788888777766655443 343221 1222344444443322 12222 2356667777776
Q ss_pred Hhch-hhhchHHHHHHHHHHHhcCCCHHHHHH----HHHHHHHHHHHHhh----cch-HHHHHHHHHHHHHhhCCCCHHH
Q 000827 881 SLGQ-RVKPYLPQICGTIKWRLNNKSAKVRQQ----AADLISRIAVVMKQ----CHE-EQLMGHLGVVLYEYLGEEYPEV 950 (1265)
Q Consensus 881 ~lg~-~~~p~Lp~ilp~Ll~~L~d~~~~VR~~----A~~~lg~La~~l~~----~~~-~~ll~~L~~~L~~~L~d~~~~V 950 (1265)
.+.. -+..+.-.++..++..|+|...++-.. +-..+-.+-..... ..+ ......+...+.-.|-+++..|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 6663 234555667777778888765554442 22222222222111 011 1245555555555667888899
Q ss_pred HHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCC---------CHHHHHHHHHHHHHHHhhCCCCcChH
Q 000827 951 LGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNR---------HEKVQENCIDLVGRIADRGAEFVPAR 1014 (1265)
Q Consensus 951 ~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~---------~~~Vre~ai~~ig~Ia~~~~~~~~~~ 1014 (1265)
|..+...|..+.+..|.+ +.+++..+-+.|-.. ...++.--++++...+..+++.+.+.
T Consensus 1143 R~~~~~~L~~i~~~s~~~-----v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~ 1210 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKS-----VVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFT 1210 (3550)
T ss_pred HHHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCch
Confidence 999999999999987543 344444444444211 23344445555555555577766655
No 240
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=78.87 E-value=3.6 Score=31.79 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=27.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000827 976 DLLPRLTPILKNRHEKVQENCIDLVGRIAD 1005 (1265)
Q Consensus 976 ~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~ 1005 (1265)
..+|.|+.+|++.+..+++.|+.+++.|+.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 478999999999999999999999999873
No 241
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.42 E-value=2.5e+02 Score=37.60 Aligned_cols=142 Identities=11% Similarity=0.138 Sum_probs=82.7
Q ss_pred hhchHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 000827 886 VKPYLPQICG-TIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLM-GHLGVVLYEYLGEEYPEVLGSILGALKAIVN 963 (1265)
Q Consensus 886 ~~p~Lp~ilp-~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll-~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~ 963 (1265)
+..++..++. .++.+-+|-.+.||..++.-|| .||..-. +-++ ...+..+-+.|.|...+||-.++.+|..+.+
T Consensus 280 i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLg---iWi~~yP-~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e 355 (1048)
T KOG2011|consen 280 IESMINDIFDSVFVHRYRDVDPDIRAICIQELG---IWIKSYP-EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYE 355 (1048)
T ss_pred HHHHHHHHhhheeeeecccCchHHHHHHHHHHH---HHHHhcc-HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHh
Confidence 3344444443 2335567889999977655554 6665422 1222 3455566677889999999999999999987
Q ss_pred HhCcccCCccHHhH----HHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHH
Q 000827 964 VIGMTKMTPPIKDL----LPRLTPIL-KNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRAT 1038 (1265)
Q Consensus 964 ~~g~~~l~p~l~~L----lp~Ll~~L-~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a 1038 (1265)
. +.+.+.+... =.+++++. ++.+..||...+.+ .+......+++..++. .+..++-+..+.++++|
T Consensus 356 ~---~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~--~~~~~~~g~L~d~di~----~Vy~Li~d~~r~~~~aa 426 (1048)
T KOG2011|consen 356 K---DEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVL--CLLLSSSGLLSDKDIL----IVYSLIYDSNRRVAVAA 426 (1048)
T ss_pred c---cccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH--HHHHhcccccChhHHH----HHHHHHhccCcchHHHH
Confidence 5 3444444444 34567776 34445555443333 3333344455554332 33344456666777766
Q ss_pred HH
Q 000827 1039 VN 1040 (1265)
Q Consensus 1039 ~~ 1040 (1265)
..
T Consensus 427 ~~ 428 (1048)
T KOG2011|consen 427 GE 428 (1048)
T ss_pred HH
Confidence 54
No 242
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.39 E-value=2.3e+02 Score=37.21 Aligned_cols=55 Identities=22% Similarity=0.337 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh
Q 000827 870 VMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMK 924 (1265)
Q Consensus 870 ~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~ 924 (1265)
.++.++|.++...|..|.+.|-..+=+++.-+.++++.|++.|-.++.+|+..+.
T Consensus 567 i~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~ 621 (1014)
T KOG4524|consen 567 IVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALN 621 (1014)
T ss_pred hhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcC
Confidence 4778999999999999998888877777788889999999999999999998654
No 243
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=78.36 E-value=1.8e+02 Score=35.89 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=10.8
Q ss_pred CCCHHHHHHHHHHHHH
Q 000827 987 NRHEKVQENCIDLVGR 1002 (1265)
Q Consensus 987 ~~~~~Vre~ai~~ig~ 1002 (1265)
+....+|..|+++|-.
T Consensus 448 ~~~~~vRi~aL~~l~e 463 (464)
T PF11864_consen 448 DRRSEVRIKALDVLEE 463 (464)
T ss_pred CCCchHHHHHHHHHhh
Confidence 3446788888877653
No 244
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=78.29 E-value=41 Score=36.20 Aligned_cols=67 Identities=22% Similarity=0.374 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCC
Q 000827 512 LVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDID 578 (1265)
Q Consensus 512 ~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~ 578 (1265)
.+.++..+..+++....|++.+++..+..+-.+++...|.++-.+++...+++|.+.+++.+-=.++
T Consensus 20 vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~ 86 (198)
T PF08161_consen 20 VLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLD 86 (198)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCcc
Confidence 4466777777777777789999999999988888888999999999999999999998887654444
No 245
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.97 E-value=10 Score=40.27 Aligned_cols=80 Identities=18% Similarity=0.222 Sum_probs=56.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh----CCC
Q 000827 934 HLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR----GAE 1009 (1265)
Q Consensus 934 ~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~----~~~ 1009 (1265)
.+++.+.+.|.+-+-.-+--+-.++..++...| +.+-|-+++|+.-|-..|..++.+|...++.+|..|... |..
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~a 192 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAA 192 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchh
Confidence 344555555554433333444556666766655 678888999998899999999999999999999998765 345
Q ss_pred CcChH
Q 000827 1010 FVPAR 1014 (1265)
Q Consensus 1010 ~~~~~ 1014 (1265)
.+|++
T Consensus 193 LVPfY 197 (262)
T KOG3961|consen 193 LVPFY 197 (262)
T ss_pred hhhHH
Confidence 56665
No 246
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=77.51 E-value=1.3e+02 Score=33.92 Aligned_cols=144 Identities=19% Similarity=0.278 Sum_probs=84.1
Q ss_pred hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCC--------CcchhHHHHHHHHHhhcCCCC-----hhhHHHHHH
Q 000827 601 IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGC--------AVLPHLRSLVEIIEHGLNDEN-----QKVRTITAL 667 (1265)
Q Consensus 601 ~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~--------~l~p~L~~ll~~l~~~L~De~-----~~VR~~A~~ 667 (1265)
++.+-+.+...+.|...+ +.++..+..+.....+ .+.-.+-..+|.+.+.+.++. +.++ .++.
T Consensus 62 f~Glq~Ll~KGL~Ss~t~---e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~-~~A~ 137 (262)
T PF14225_consen 62 FEGLQPLLLKGLRSSSTY---ELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECI-EIAE 137 (262)
T ss_pred chhHHHHHhCccCCCCcH---HHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHH-HHHH
Confidence 566777777777775533 5566677666554322 122245567888888887766 3444 4457
Q ss_pred HHHHHHHHhCccchhhhHHhHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCHHHHHH
Q 000827 668 SLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKI 747 (1265)
Q Consensus 668 aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de~~r~~ 747 (1265)
+|+.+++. .+...+..++..+-++--.. ...|++ .++.++...|...+..+++..|...+.+.-.-+|..
T Consensus 138 ~La~~a~~---~~~~~La~il~~ya~~~fr~----~~dfl~---~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~ 207 (262)
T PF14225_consen 138 ALAQVAEA---QGLPNLARILSSYAKGRFRD----KDDFLS---QVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRK 207 (262)
T ss_pred HHHHHHHh---CCCccHHHHHHHHHhcCCCC----HHHHHH---HHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHH
Confidence 77777754 33344445555544432211 122332 233444444444444556667777787777888999
Q ss_pred HHHHHHHhhhc
Q 000827 748 VLKVVKQCVST 758 (1265)
Q Consensus 748 al~~l~~~~~~ 758 (1265)
+++++..++..
T Consensus 208 ~L~iL~~ll~~ 218 (262)
T PF14225_consen 208 TLQILKVLLPH 218 (262)
T ss_pred HHHHHHHHhcc
Confidence 99988877654
No 247
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=76.97 E-value=13 Score=40.29 Aligned_cols=131 Identities=18% Similarity=0.230 Sum_probs=77.6
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHH--HHHHHHHHHHHHHhhhChhhHHHHHHHHH
Q 000827 535 LVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEY--VRNTTARAFSVVASALGIPALLPFLKAVC 612 (1265)
Q Consensus 535 l~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~--vR~~aa~~l~~lA~~lg~~~Llp~L~~~l 612 (1265)
...+..++.+.....|..|..++....+..... .+..+...+.+.+.| +=..+..+++.+.... +.+.+++...+
T Consensus 53 ~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~-~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W~ 129 (213)
T PF08713_consen 53 YELADELWESGYREERYLALLILDKRRKKLTEE-DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALELLEKWA 129 (213)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH-HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH-HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHHHHHHH
Confidence 334445555666777777776665433332211 222233333333333 2233344444443222 68899999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHH
Q 000827 613 QSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEA 675 (1265)
Q Consensus 613 ~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~ 675 (1265)
.|++.| .|++|+.++... ....+++.++..+...+.|++..||.+..++|..++..
T Consensus 130 ~s~~~w-~rR~~~v~~~~~------~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 130 KSDNEW-VRRAAIVMLLRY------IRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp HCSSHH-HHHHHHHCTTTH------GGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred hCCcHH-HHHHHHHHHHHH------HHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 998877 555554443211 11267889999999999999999999999998877543
No 248
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.40 E-value=3.2e+02 Score=37.88 Aligned_cols=113 Identities=15% Similarity=0.132 Sum_probs=73.1
Q ss_pred hhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhccc-ch-HHHHHHHHHHHHHHhch
Q 000827 807 ADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTS-DD-ANVMLNGFGAVVNSLGQ 884 (1265)
Q Consensus 807 ~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~-ed-~~~al~aL~~I~~~lg~ 884 (1265)
.++...+...+.|....+|++++.++..++..-.....+ ...+.....++..+- +. ...+..+||+++-++.-
T Consensus 1568 ~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~-----~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy 1642 (1710)
T KOG1851|consen 1568 DDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFVS-----DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPY 1642 (1710)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccch-----HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccc
Confidence 455556667778887889999999988776543211111 001111111211111 11 24788999999999887
Q ss_pred hhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhh
Q 000827 885 RVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQ 925 (1265)
Q Consensus 885 ~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~ 925 (1265)
.+--++|+.+..+-.-.+++ ..+++++-.++..+-..+..
T Consensus 1643 ~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1643 VVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHAD 1682 (1710)
T ss_pred cchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhhh
Confidence 77667888777666666666 78999999999988876654
No 249
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=76.36 E-value=2.6e+02 Score=36.70 Aligned_cols=418 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhhhH-HhH
Q 000827 610 AVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFD-SVL 688 (1265)
Q Consensus 610 ~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~~~-~iL 688 (1265)
+++.+++ ..+..+..+.......+....+ +.++|.+..++-|+++.+|.=|...+..+...-.....+.|+ .++
T Consensus 90 ~lLr~~~---~l~~~F~~~f~~~~~~~~~~~~--~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~ 164 (727)
T PF12726_consen 90 ALLRDDE---ELRELFDAIFSSLQSKKPLKLP--KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVL 164 (727)
T ss_pred HHHcCcH---HHHHHHHHHHHHHhccCCcccc--ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHH
Q ss_pred HHHHHhhhccchH-----HHHHHHHHHhhhhhhhhHhhhhhhHHH-----HHHHHHHHhCCCCHHHHHHHHHHHHHhhhc
Q 000827 689 KPLWKGIRSHRGK-----VLAAFLKAIGFIIPLMDALYASYYTKE-----VMFILIREFQSPDEEMKKIVLKVVKQCVST 758 (1265)
Q Consensus 689 ~~L~~~l~~~~~~-----~la~~l~a~~~lip~~~~~~~~~~~~~-----im~~L~~~l~~~de~~r~~al~~l~~~~~~ 758 (1265)
+.+-..+..-... ....|-..+..++..|+.+....++.. |+..+++.+.+..++.-..+++++..++..
T Consensus 165 ~~l~~~l~~i~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k 244 (727)
T PF12726_consen 165 DELSSHLYRISPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEK 244 (727)
T ss_pred HHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHh
Q ss_pred cCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHHHHHhcCCChhHHH---HHHHHHHHH
Q 000827 759 EGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRR---MVMETIEKV 835 (1265)
Q Consensus 759 ~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i~~~l~d~~~~vR~---~a~~~l~~i 835 (1265)
.+ ..||..........+-..+ .+.+..-..+.....+.....-. ..+.-+...
T Consensus 245 ~~---------------~~FW~~~~~~~p~~ild~I---------f~np~f~~~L~~~~~~~~~~~~~~~~~~~sWi~pf 300 (727)
T PF12726_consen 245 LG---------------SDFWDAMGPISPQVILDQI---------FDNPAFKKLLLQSQEDEISESDDDLPDLLSWISPF 300 (727)
T ss_pred CH---------------HHHhcccCCCCHHHHHHHH---------hCChHHHHHHHhhccCCccccchhhHHHHHHHHHH
Q ss_pred HHhhCCCCchhHHHHHHHHHHHHHhhhcccch---HHHHHHHHHHHHHHhch-------hhhchHHHHHHHHHHHhcCC-
Q 000827 836 VANLGASDIDARLEELLIDGILYAFQEQTSDD---ANVMLNGFGAVVNSLGQ-------RVKPYLPQICGTIKWRLNNK- 904 (1265)
Q Consensus 836 i~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed---~~~al~aL~~I~~~lg~-------~~~p~Lp~ilp~Ll~~L~d~- 904 (1265)
+..+.... .......++..++..++.....+ ......++..+...+-. .....+..+..+.-...+..
T Consensus 301 ~~SL~~~~-~~~~~~~l~~~Ll~~~q~~~~~~~~r~~c~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (727)
T PF12726_consen 301 LRSLSPSQ-RSQACRKLLHFLLERLQHDRFPDEARAACLRAGLDALLSTLRSFNDNERSDFSTALITINDTRNLVSNYII 379 (727)
T ss_pred HHHhcccc-hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcccccccccchhHhhHHHHHHHHHhhhh
Q ss_pred ----------------CHHHHHHHHHHHHHHHHHHhhcchHHH----------------HHHHHHHHHHhhCCCCHHHHH
Q 000827 905 ----------------SAKVRQQAADLISRIAVVMKQCHEEQL----------------MGHLGVVLYEYLGEEYPEVLG 952 (1265)
Q Consensus 905 ----------------~~~VR~~A~~~lg~La~~l~~~~~~~l----------------l~~L~~~L~~~L~d~~~~V~~ 952 (1265)
...+...|..++......=-....... .+.|=..++..+....+....
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~a~~vi~~~l~~D~~~l~~~~~~l~~~~~~~~~~~~~~~~lW~~l~~~~~~~~~~la~ 459 (727)
T PF12726_consen 380 RDAIIPAAKFKIEGWSNSSVSNSAMKVIRNALALDILSLCEESQALLRGKPLQPAVSRISPNLWKALLKSLDSDNPDLAK 459 (727)
T ss_pred hhhccChhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhhhHHHHHHHHHhhcCCChHHHH
Q ss_pred HHHHHHHHHHHHhCcccCCccH-HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHH--HHHHHHHHHHhh
Q 000827 953 SILGALKAIVNVIGMTKMTPPI-KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWM--RICFELLEMLKA 1029 (1265)
Q Consensus 953 ~al~aL~~lv~~~g~~~l~p~l-~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~--~il~~LL~~Lk~ 1029 (1265)
.++.++..++. -+.+.|-- ++-++.-....++.-..++.....++++++...++.+... +. .....++.++=+
T Consensus 460 ~lL~~~~~l~~---l~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l-~~d~~~~~~i~s~lfs 535 (727)
T PF12726_consen 460 ALLKSLSPLIG---LEKFPPKKEKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKEL-LSDPDAAQAIWSLLFS 535 (727)
T ss_pred HHHHHHHHhcc---ccccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-HcCcchhhHHHhheeC
Q ss_pred chHHHHHHHHHHHHHHHHhhCcHHHHHHHHHh
Q 000827 1030 HKKGIRRATVNTFGYIAKAIGPQDVLATLLNN 1061 (1265)
Q Consensus 1030 ~~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~ 1061 (1265)
+..+++.+|.+-+..+-..-|..+.+..|++.
T Consensus 536 p~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~ 567 (727)
T PF12726_consen 536 PDDDLYQAAQDLLKQAFDVDGRLEAIQALLQS 567 (727)
T ss_pred CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
No 250
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.94 E-value=1.6e+02 Score=33.63 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=48.1
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000827 939 LYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 939 L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~ 1006 (1265)
+.+.+.+..|.|+..++..+-.+... |...+..|-...++.+.+++++... -+.|+.++..++..
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 45567788999999999888888766 5666777778889999999888665 34455666666554
No 251
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=74.67 E-value=2.1e+02 Score=34.77 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHh--CcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000827 930 QLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI--GMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD 1005 (1265)
Q Consensus 930 ~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~--g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~ 1005 (1265)
+++..|+.+|. ...++.+++-||.=+++++... |...+.. + ..=.++.+++.+.+..||..|+.|++.|.-
T Consensus 353 ~llk~L~~iL~---~s~d~~~laVAc~Dige~vr~~P~gr~i~~~-l-g~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 353 ELLKILIHLLE---TSVDPIILAVACHDIGEYVRHYPRGKDVVEQ-L-GGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHHh---cCCCcceeehhhhhHHHHHHHCccHHHHHHH-c-CcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 35666666653 2356788899999999999875 2111110 0 012235566778899999999999998753
No 252
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=74.21 E-value=6.7 Score=40.80 Aligned_cols=76 Identities=20% Similarity=0.357 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhh
Q 000827 618 WQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIR 696 (1265)
Q Consensus 618 ~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~ 696 (1265)
-..|.+|+.++..+-......+ .+..++..+..|+.| +..||..+...+..++...+......++.++++|-..+.
T Consensus 41 LelRK~ayE~lytlLd~~~~~~--~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRI--DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 4578999998886655333233 367789999999999 999999999999999876654444455566665555443
No 253
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=73.69 E-value=2.5e+02 Score=35.31 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=44.6
Q ss_pred HhhCcHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCchhHHHHHHHHHH
Q 000827 1047 KAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLS 1113 (1265)
Q Consensus 1047 ~~iGp~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~vl~al~ 1113 (1265)
+.+|.+-++-.+-..++..+..+|..+=.|+|++.-....-.|+.+|-.-.++.+.+|-...+-+++
T Consensus 634 eeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq~~vlDtLsk~shd~D~eva~naIfamG 700 (878)
T KOG2005|consen 634 EEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDGDLEVAMNAIFAMG 700 (878)
T ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCcchHHHHHHHHHhc
Confidence 4567776777776677788888999888888887543333467777766666677666544443443
No 254
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=73.50 E-value=2.1e+02 Score=39.36 Aligned_cols=95 Identities=11% Similarity=0.228 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHhhcc-hHHHH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccH--HhHHHHHH
Q 000827 908 VRQQAADLISRIAVVMKQCH-EEQLM--GHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPI--KDLLPRLT 982 (1265)
Q Consensus 908 VR~~A~~~lg~La~~l~~~~-~~~ll--~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l--~~Llp~Ll 982 (1265)
|-+.|--.|-.++..+..|. +.+++ .+++..|+..|+...-.|..++|++|-+|....- ..+.++ ..-++.|.
T Consensus 501 IIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p--~DQq~LwD~gAv~mLr 578 (2195)
T KOG2122|consen 501 IIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSP--EDQQMLWDDGAVPMLR 578 (2195)
T ss_pred hhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCH--HHHHHHHhcccHHHHH
Confidence 33444444444444454454 23444 3467777788888777889999999999875431 122333 23467777
Q ss_pred HHhcCCCHHHHHHHHHHHHHHH
Q 000827 983 PILKNRHEKVQENCIDLVGRIA 1004 (1265)
Q Consensus 983 ~~L~~~~~~Vre~ai~~ig~Ia 1004 (1265)
.++.+.|.-+-+.+..++-.+.
T Consensus 579 nLIhSKhkMIa~GSaaALrNLl 600 (2195)
T KOG2122|consen 579 NLIHSKHKMIAMGSAAALRNLL 600 (2195)
T ss_pred HHHhhhhhhhhhhHHHHHHHHh
Confidence 7888888776666555555443
No 255
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=73.50 E-value=18 Score=41.91 Aligned_cols=109 Identities=12% Similarity=0.069 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchH---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccC
Q 000827 894 CGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEE---QLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKM 970 (1265)
Q Consensus 894 lp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~---~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l 970 (1265)
...++..++.+++-++..|+..++.++..-...... ++++.++..+-..+...+.++...++.+|..+... ..+
T Consensus 107 ~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~---~~~ 183 (312)
T PF03224_consen 107 YSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS---KEY 183 (312)
T ss_dssp HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS---HHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc---chh
Confidence 344456888899999999999999988654433222 45555655555444334456677788888888642 112
Q ss_pred CccH--HhHHHHHHHHh-----cCCC--HHHHHHHHHHHHHHHh
Q 000827 971 TPPI--KDLLPRLTPIL-----KNRH--EKVQENCIDLVGRIAD 1005 (1265)
Q Consensus 971 ~p~l--~~Llp~Ll~~L-----~~~~--~~Vre~ai~~ig~Ia~ 1005 (1265)
+..+ ...++.+.++| .+.. -.++-.++-|+-.+.-
T Consensus 184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF 227 (312)
T PF03224_consen 184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF 227 (312)
T ss_dssp HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc
Confidence 2111 55667777777 2222 3455666777666543
No 256
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=71.78 E-value=60 Score=39.26 Aligned_cols=93 Identities=22% Similarity=0.265 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhhcch---HHHHHHHHHHHHHh-hCCCCHHH-HHHHHHHHHHHHHHhC-----------cccCCccHHh
Q 000827 913 ADLISRIAVVMKQCHE---EQLMGHLGVVLYEY-LGEEYPEV-LGSILGALKAIVNVIG-----------MTKMTPPIKD 976 (1265)
Q Consensus 913 ~~~lg~La~~l~~~~~---~~ll~~L~~~L~~~-L~d~~~~V-~~~al~aL~~lv~~~g-----------~~~l~p~l~~ 976 (1265)
+-++|.++.-+..|.| +++-++|.+.-+.. |.+..|.. +-+++.+|-.++-.=| ...+..-+++
T Consensus 18 alalg~~vhgls~cghgkaedl~~~ll~~w~ki~laeg~ptm~~laa~~GlvaLvgse~~~iQlkse~~~ss~~q~~lne 97 (589)
T PF11229_consen 18 ALALGNIVHGLSVCGHGKAEDLGNRLLPAWIKIVLAEGCPTMQRLAALNGLVALVGSEGDLIQLKSEAIQSSQFQSRLNE 97 (589)
T ss_pred HHHHHHHHhhhhhcCCcchhhhhhhHHHHHHHHHHhcCCcHHHHHHHhhchhheeccccceeeehhhcccCHHHHHHHHH
Confidence 4678888887777765 44555555554332 35656654 3444555554432111 1224445788
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHh
Q 000827 977 LLPRLTPILKNRH-EKVQENCIDLVGRIAD 1005 (1265)
Q Consensus 977 Llp~Ll~~L~~~~-~~Vre~ai~~ig~Ia~ 1005 (1265)
++..+++++.... -.+|.+++.++|.+--
T Consensus 98 vir~ltqvis~sg~iglQsn~~wlLGhLhl 127 (589)
T PF11229_consen 98 VIRTLTQVISFSGVIGLQSNAAWLLGHLHL 127 (589)
T ss_pred HHHHHHHHHcCccccccccchHHHHHHHHH
Confidence 8999998887654 6789999999998753
No 257
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=71.18 E-value=63 Score=32.33 Aligned_cols=77 Identities=13% Similarity=0.083 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchH-----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHh
Q 000827 891 PQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEE-----QLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI 965 (1265)
Q Consensus 891 p~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~-----~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~ 965 (1265)
...+..|...|+++++.|+..|..++..++...+..|+. +++..|..++... ....+.|+..++..+......+
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS-PKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 346677789999999999999999999988877665543 3455555554322 2346789999999999999988
Q ss_pred Ccc
Q 000827 966 GMT 968 (1265)
Q Consensus 966 g~~ 968 (1265)
+.+
T Consensus 115 ~~~ 117 (133)
T cd03561 115 GGH 117 (133)
T ss_pred cCC
Confidence 654
No 258
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=70.99 E-value=3e+02 Score=35.14 Aligned_cols=115 Identities=13% Similarity=0.091 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhch-h-------hh--chHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Q 000827 869 NVMLNGFGAVVNSLGQ-R-------VK--PYLPQICGTIKW--RLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLG 936 (1265)
Q Consensus 869 ~~al~aL~~I~~~lg~-~-------~~--p~Lp~ilp~Ll~--~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~ 936 (1265)
+.++.-+-.+.+++.. . .. .-+-++++.++. .+.++|+.|.-.-.+.+-|....+... .+..+.++
T Consensus 458 E~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e--sq~ip~vL 535 (980)
T KOG2021|consen 458 ELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE--SQKIPLVL 535 (980)
T ss_pred HHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc--hhhhHHHH
Confidence 5677667777776542 1 11 234455555543 467889999988888888877766532 34555555
Q ss_pred HHHHHh--hCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhc
Q 000827 937 VVLYEY--LGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILK 986 (1265)
Q Consensus 937 ~~L~~~--L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~ 986 (1265)
.+++.. +......||..+-+-+..++..+ ...+.||+++++..+-+.|.
T Consensus 536 ~aFld~rglhn~ne~Vr~RawYLF~RfVKlL-kkqlvpfie~iln~iqdlL~ 586 (980)
T KOG2021|consen 536 NAFLDSRGLHNKNENVRLRAWYLFTRFVKLL-KKQLVPFIEEILNKIQDLLH 586 (980)
T ss_pred HHHccchhccccccccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 555442 33456689999999999999887 44688999999999999983
No 259
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=70.44 E-value=1.8e+02 Score=32.22 Aligned_cols=198 Identities=16% Similarity=0.095 Sum_probs=97.1
Q ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCc-HHHH
Q 000827 978 LPRLTP-ILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGP-QDVL 1055 (1265)
Q Consensus 978 lp~Ll~-~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp-~~vl 1055 (1265)
+|.|+- .-+..+.+++...+.+++.++.+..... ..++..+..+.+......+..+..-+..+-+.-.- +..+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L 76 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFL 76 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHH
Confidence 344444 3345678899999999999998853211 23444444444444444544555555555433211 1233
Q ss_pred HHHHHh--hc------cc--chhhHHHHHHHHHHHHhh---cCCcccHHHHHhhc-CCCchhHHHHHHHHHHHHHHHhch
Q 000827 1056 ATLLNN--LK------VQ--ERQNRVCTTVAIAIVAET---CSPFTVLPALMNEY-RVPELNVQNGVLKSLSFLFEYIGE 1121 (1265)
Q Consensus 1056 p~Ll~~--L~------~~--e~~~R~~~~~ai~~l~e~---~gp~~vlPaL~~~~-~~~~~~vq~~vl~al~~l~~~ig~ 1121 (1265)
..++.. ++ .. ......+.+.++..+.+. +|+ .+++.|...+ +..+..++.-.++++..++++-.-
T Consensus 77 ~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vv 155 (234)
T PF12530_consen 77 QPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-DLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVV 155 (234)
T ss_pred HHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhc
Confidence 322322 11 11 122233333333333322 222 3566666666 444445666777888888754322
Q ss_pred hhhhhHHhHHHHHHHHhccCChhHHHHHHHHHHHHHhcccCC-CchhHHHHHHHhhhhhcccCC
Q 000827 1122 MGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGL-GCEDALVHLLNYVWPNIFETS 1184 (1265)
Q Consensus 1122 ~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~g~-~~e~~~~~~ln~l~~~i~~~s 1184 (1265)
.+...+..+.|-| =.+.++.+-+.-++.+.-+..|.... .++....+++..+|..+.+..
T Consensus 156 d~~s~w~vl~~~l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 156 DFYSAWKVLQKKL---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred cHHHHHHHHHHhc---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 2222334444433 22334555444444444333333221 133455577788888876655
No 260
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=70.05 E-value=7.5 Score=30.45 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000827 891 PQICGTIKWRLNNKSAKVRQQAADLI 916 (1265)
Q Consensus 891 p~ilp~Ll~~L~d~~~~VR~~A~~~l 916 (1265)
+.+...|...+.|+++.||++|.++|
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 46778888999999999999998864
No 261
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=69.41 E-value=16 Score=34.04 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=41.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHH
Q 000827 902 NNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEY--PEVLGSILGALKAIVN 963 (1265)
Q Consensus 902 ~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~--~~V~~~al~aL~~lv~ 963 (1265)
.+.||.+|+.|+.+++.|+...+... ..+-+.+...+...+.|+. ....-.++.+|.++..
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~-~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSY-PTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 35699999999999999998877544 3455556666666555543 3455566666666643
No 262
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=68.40 E-value=52 Score=33.37 Aligned_cols=75 Identities=19% Similarity=0.137 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchH-----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHh
Q 000827 891 PQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEE-----QLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI 965 (1265)
Q Consensus 891 p~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~-----~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~ 965 (1265)
...+..|...|+++++.|...|..++..++...+..|+. .+++.|..++.. ...+.|+..++..+.+-...+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~---~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT---TKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc---cCCHHHHHHHHHHHHHHHHHh
Confidence 356777889999999999999999999888877665543 356666655432 456789999999999999888
Q ss_pred Ccc
Q 000827 966 GMT 968 (1265)
Q Consensus 966 g~~ 968 (1265)
+.+
T Consensus 117 ~~~ 119 (142)
T cd03569 117 RNK 119 (142)
T ss_pred CCC
Confidence 643
No 263
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.26 E-value=42 Score=39.46 Aligned_cols=107 Identities=12% Similarity=0.096 Sum_probs=74.3
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhh------ChhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCC-CcchhHHHHHH
Q 000827 576 DIDNIDEYVRNTTARAFSVVASAL------GIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGC-AVLPHLRSLVE 648 (1265)
Q Consensus 576 ~l~~~d~~vR~~aa~~l~~lA~~l------g~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~-~l~p~L~~ll~ 648 (1265)
.+.|-...||+.|-+.|-.+..+- ....+++-+.+++.+.+ -..|.+.++.+..+...++. .+.|+..-+++
T Consensus 66 qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~-~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~ 144 (393)
T KOG2149|consen 66 QLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDD-SLVRDALYQLLDSLILPACKEDQSPMVSLLMP 144 (393)
T ss_pred hhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCcc-ccHHHHHHHHHHHHHhhcchhhhcchHHHHHH
Confidence 344444455555554444333220 13356666666666654 56888888888765554443 46899999999
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhh
Q 000827 649 IIEHGLNDENQKVRTITALSLAALAEAAAPYGIES 683 (1265)
Q Consensus 649 ~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~ 683 (1265)
.+..++..-.+.||..+..-+..+++.+.|+...+
T Consensus 145 yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~ 179 (393)
T KOG2149|consen 145 YISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRY 179 (393)
T ss_pred HHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHH
Confidence 99999999999999999999999999988866544
No 264
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.30 E-value=4.4e+02 Score=35.57 Aligned_cols=135 Identities=18% Similarity=0.095 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhhc----hHHHHHHHHHHHHHHHHhhCc---HHHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhcCC--c
Q 000827 1018 RICFELLEMLKAH----KKGIRRATVNTFGYIAKAIGP---QDVLATLLNNLK-VQERQNRVCTTVAIAIVAETCSP--F 1087 (1265)
Q Consensus 1018 ~il~~LL~~Lk~~----~~~iR~~a~~tlg~Ia~~iGp---~~vlp~Ll~~L~-~~e~~~R~~~~~ai~~l~e~~gp--~ 1087 (1265)
++++.+++..+.+ ++.++.+|.-|+|.+.- +.. +.-+|.|++.+. .+..-+|.+..+|+|-++=-... .
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie 997 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-ISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIE 997 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccc
Confidence 4444445544433 68899999999998752 222 245788888765 67778898888887765432211 1
Q ss_pred ccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 000827 1088 TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMA 1157 (1265)
Q Consensus 1088 ~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~~la 1157 (1265)
...+.|..++++++..||..++..+++++-+---..+.|+..+. .++.|.+..++..|-...+.++
T Consensus 998 ~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA----~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 998 PWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMA----LCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHH----HHhcCCcHHHHHHHHHHHHHhh
Confidence 23568889999999999999999999987542223555666544 4588999999999997776665
No 265
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=67.24 E-value=3.4e+02 Score=34.20 Aligned_cols=101 Identities=10% Similarity=0.016 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHH
Q 000827 946 EYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLE 1025 (1265)
Q Consensus 946 ~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~ 1025 (1265)
.+.++++++|-++..+...+..-.-.+--.+++..|+++|.++.-.|+.++..+|..+.-.-++.-+.+---..+..+.+
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 45678999999999887655321111334667777889998888899998888888777552222111111134566777
Q ss_pred HHhhchHHHHHHHHHHHHHHH
Q 000827 1026 MLKAHKKGIRRATVNTFGYIA 1046 (1265)
Q Consensus 1026 ~Lk~~~~~iR~~a~~tlg~Ia 1046 (1265)
++++...++|..+.+.+-.+.
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~ 489 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLM 489 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHH
Confidence 888888889988888877664
No 266
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=66.09 E-value=83 Score=39.31 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=81.3
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHHHhCccc-CCc----cHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChH
Q 000827 940 YEYLGEEYPEVLGSILGALKAIVNVIGMTK-MTP----PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAR 1014 (1265)
Q Consensus 940 ~~~L~d~~~~V~~~al~aL~~lv~~~g~~~-l~p----~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~ 1014 (1265)
.+.|+.+....|-+++.++++++..+..+. |.. -+..++..+.+.|.+..+-+|-.|+..+..|......+...+
T Consensus 305 ~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r 384 (1128)
T COG5098 305 DELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRR 384 (1128)
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchH
Confidence 344567777889999999999998875432 433 467788888888999999999999999999998766555444
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 000827 1015 EWMRICFELLEMLKAHKKGIRRATVNTFGYIAK 1047 (1265)
Q Consensus 1015 e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~ 1047 (1265)
..+.......+.+...-+|+.|++-+..+..
T Consensus 385 --~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 385 --HEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred --HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 3455556677888888899999998887753
No 267
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=65.42 E-value=44 Score=43.22 Aligned_cols=7 Identities=43% Similarity=1.075 Sum_probs=3.1
Q ss_pred CcCcccc
Q 000827 287 SRWDETP 293 (1265)
Q Consensus 287 s~~d~tp 293 (1265)
|.|-.||
T Consensus 854 ~~~~g~~ 860 (1024)
T KOG1999|consen 854 PAWPGTP 860 (1024)
T ss_pred cCCCCCC
Confidence 4444444
No 268
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=65.38 E-value=2.6e+02 Score=32.29 Aligned_cols=69 Identities=10% Similarity=0.105 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHH
Q 000827 977 LLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKA----HKKGIRRATVNTFGYIA 1046 (1265)
Q Consensus 977 Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~----~~~~iR~~a~~tlg~Ia 1046 (1265)
....++..+.+.+.-++..++..++.|+..++..-... ...++..+++.+++ +..+....++.+++.+.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL 178 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL 178 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence 34456667788899999999999999998855443221 13455566665554 34455566677777665
No 269
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=64.46 E-value=8.6 Score=34.13 Aligned_cols=59 Identities=14% Similarity=0.287 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhh--CCCCcChHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHhhCcHHH
Q 000827 993 QENCIDLVGRIADR--GAEFVPAREWMRICFELLEMLK-AHKKGIRRATVNTFGYIAKAIGPQDV 1054 (1265)
Q Consensus 993 re~ai~~ig~Ia~~--~~~~~~~~e~~~il~~LL~~Lk-~~~~~iR~~a~~tlg~Ia~~iGp~~v 1054 (1265)
..+++.++|.|+.. |-.++... .++..+++... .+..++|..+..++|.|+.+..-.++
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~---~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~ 65 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDES---DIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEI 65 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhc---CHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHH
Confidence 46789999999987 44555432 56666776655 45889999999999999976543333
No 270
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=64.41 E-value=3.1e+02 Score=32.72 Aligned_cols=154 Identities=18% Similarity=0.123 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHH----------HHHHHHHHHhhh-ccc-chHHHHHHHHHH
Q 000827 810 VGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEE----------LLIDGILYAFQE-QTS-DDANVMLNGFGA 877 (1265)
Q Consensus 810 l~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~----------~ll~~ll~~l~e-~~~-ed~~~al~aL~~ 877 (1265)
++.+...+-+....+|.++...+..+...++....-.+... .+++.+...+++ ..+ ++...+.+.++.
T Consensus 177 ~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~ 256 (372)
T PF12231_consen 177 FPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSV 256 (372)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHH
Confidence 44455555566667888877766666555543211000000 112222222222 111 233467788888
Q ss_pred HHHHhchh-h--hchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHhhCCC-CH---
Q 000827 878 VVNSLGQR-V--KPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCH--EEQLMGHLGVVLYEYLGEE-YP--- 948 (1265)
Q Consensus 878 I~~~lg~~-~--~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~--~~~ll~~L~~~L~~~L~d~-~~--- 948 (1265)
+...+|.. + -+|+...+...-.|+++.++.+|.+|..+..++...+.... ....+.-|..-+.-.+..+ ..
T Consensus 257 ~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~ 336 (372)
T PF12231_consen 257 VILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTK 336 (372)
T ss_pred HHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCcccccccc
Confidence 88888853 3 58899999999999999999999999999999998654422 1334544444443333322 22
Q ss_pred -HHHHHHHHHHHHHHH
Q 000827 949 -EVLGSILGALKAIVN 963 (1265)
Q Consensus 949 -~V~~~al~aL~~lv~ 963 (1265)
+++..++..+..+.-
T Consensus 337 ~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 337 EEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHHHHHHHHhchHH
Confidence 677777777777763
No 271
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=64.01 E-value=9.6 Score=28.88 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000827 893 ICGTIKWRLNNKSAKVRQQAADLISRIA 920 (1265)
Q Consensus 893 ilp~Ll~~L~d~~~~VR~~A~~~lg~La 920 (1265)
.++.|+.+++..++.++..|+++|..|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677778888889999999999999876
No 272
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=63.80 E-value=1.2e+02 Score=30.99 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhchhhhchHH--HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhh
Q 000827 869 NVMLNGFGAVVNSLGQRVKPYLP--QICGTIKWRLNN-KSAKVRQQAADLISRIAVVMKQ 925 (1265)
Q Consensus 869 ~~al~aL~~I~~~lg~~~~p~Lp--~ilp~Ll~~L~d-~~~~VR~~A~~~lg~La~~l~~ 925 (1265)
-.++..|.+++.+||..|...+. .++..|..++++ .+..|++-+..+|...+..++.
T Consensus 55 l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 55 LRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 35788889999999987754443 366666678887 7999999999999888876653
No 273
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=63.52 E-value=3.2e+02 Score=32.59 Aligned_cols=95 Identities=17% Similarity=0.273 Sum_probs=62.6
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHhCcccCCc----cHHhHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhh--CCCCcChH
Q 000827 943 LGEEYPEVLGSILGALKAIVNVIGMTKMTP----PIKDLLPRLTPILK--NRHEKVQENCIDLVGRIADR--GAEFVPAR 1014 (1265)
Q Consensus 943 L~d~~~~V~~~al~aL~~lv~~~g~~~l~p----~l~~Llp~Ll~~L~--~~~~~Vre~ai~~ig~Ia~~--~~~~~~~~ 1014 (1265)
|.+. ++||+++...+.-++.... .+.- .++.+ ++.-|. +.+..-|+.|+..+-.+... +...+|.
T Consensus 35 L~~~-~~vraa~yRilRy~i~d~~--~l~~~~~l~id~~---ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~- 107 (371)
T PF14664_consen 35 LSDS-KEVRAAGYRILRYLISDEE--SLQILLKLHIDIF---IIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPR- 107 (371)
T ss_pred CCCc-HHHHHHHHHHHHHHHcCHH--HHHHHHHcCCchh---hHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCH-
Confidence 4555 9999999999988875321 1110 11111 122222 23455689999999999887 5556654
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 000827 1015 EWMRICFELLEMLKAHKKGIRRATVNTFGYIAK 1047 (1265)
Q Consensus 1015 e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~ 1047 (1265)
.++..++.....+....|..++.|+..++-
T Consensus 108 ---~vvralvaiae~~~D~lr~~cletL~El~l 137 (371)
T PF14664_consen 108 ---GVVRALVAIAEHEDDRLRRICLETLCELAL 137 (371)
T ss_pred ---HHHHHHHHHHhCCchHHHHHHHHHHHHHHh
Confidence 455566666666788899999999999873
No 274
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=63.19 E-value=56 Score=34.78 Aligned_cols=86 Identities=13% Similarity=0.151 Sum_probs=64.3
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHH-hchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhChhhHHHHHHHHHcC
Q 000827 536 VVIEPLLIDEDYYARVEGREIISNLSKA-AGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQS 614 (1265)
Q Consensus 536 ~~i~~lL~ded~~VR~~a~~il~~La~~-~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~~l~s 614 (1265)
..+..-+.+++..+|..|..++...... ..+..++..+...+.+++.+|+++.+.+|..++... -..++.|+.....+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~-~~~v~~~l~~~~~~ 186 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKD-PERVIAFLEKNGLS 186 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHh
Confidence 5666677788888888887777766665 456677777777888899999999999999998873 56788888876554
Q ss_pred CchhHHHH
Q 000827 615 KKSWQARH 622 (1265)
Q Consensus 615 ~~s~~~R~ 622 (1265)
.+.+..|+
T Consensus 187 ~~~~t~r~ 194 (197)
T cd06561 187 MPRLTLRY 194 (197)
T ss_pred CChHHHHH
Confidence 33244444
No 275
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=62.18 E-value=2.6e+02 Score=31.09 Aligned_cols=121 Identities=24% Similarity=0.284 Sum_probs=80.7
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHH----Hhhc-chHH---HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCccc--
Q 000827 900 RLNNKSAKVRQQAADLISRIAVV----MKQC-HEEQ---LMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTK-- 969 (1265)
Q Consensus 900 ~L~d~~~~VR~~A~~~lg~La~~----l~~~-~~~~---ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~-- 969 (1265)
+|+|.++.|...++.+.+.+-.. +... ..++ .+..+...++..+...++.|+-++++-+..++-......
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 47889999999999988887763 3111 1122 355566667777888899999999999999986552110
Q ss_pred ----------C--------Ccc---------HHhHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhhCCCCcChHHHHHHH
Q 000827 970 ----------M--------TPP---------IKDLLPRLTPILKNRH--EKVQENCIDLVGRIADRGAEFVPAREWMRIC 1020 (1265)
Q Consensus 970 ----------l--------~p~---------l~~Llp~Ll~~L~~~~--~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il 1020 (1265)
+ -|+ -..++..|+..|.+.+ ..+-.+++.+++.|++.-+.| ..+|+
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~-----~~~Il 155 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQF-----MSRIL 155 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGG-----HHHHH
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHH-----HHHHH
Confidence 0 011 2447788888888776 566788889999999886666 34566
Q ss_pred HHHHH
Q 000827 1021 FELLE 1025 (1265)
Q Consensus 1021 ~~LL~ 1025 (1265)
..|++
T Consensus 156 ~~ll~ 160 (239)
T PF11935_consen 156 PALLS 160 (239)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66553
No 276
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=61.78 E-value=1.5e+02 Score=29.56 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHhCc
Q 000827 891 PQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMG-HLGVVLYEYLGEEY--PEVLGSILGALKAIVNVIGM 967 (1265)
Q Consensus 891 p~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~-~L~~~L~~~L~d~~--~~V~~~al~aL~~lv~~~g~ 967 (1265)
...+..|...|+++++.|...|..++..++...+..|+.++.. .+...|...+.+.+ +.|+..++..+..-...+..
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 3467778899999999999999999999988777666533311 13333333333332 34999999999999888854
No 277
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=61.54 E-value=4e+02 Score=33.59 Aligned_cols=110 Identities=15% Similarity=0.268 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCc----c----cCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000827 930 QLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM----T----KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVG 1001 (1265)
Q Consensus 930 ~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~----~----~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig 1001 (1265)
++|..+.+.+.+.= ...+|+.+.|+.|.+|..=+.. + .....+..|.+++.++.... +--..+.-++.
T Consensus 129 ~Fm~~l~~~f~~~h--~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~--khw~~afPL~t 204 (552)
T PF14222_consen 129 EFMQSLAKFFLEAH--KKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKP--KHWNVAFPLVT 204 (552)
T ss_pred HHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCc--chhhhHHHHHH
Confidence 36666666654321 3456888888888887643321 1 12345677777777777652 22233455555
Q ss_pred HHHhhC-CCCcChHHHH-HHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 000827 1002 RIADRG-AEFVPAREWM-RICFELLEMLKAHKKGIRRATVNTFGYIA 1046 (1265)
Q Consensus 1002 ~Ia~~~-~~~~~~~e~~-~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia 1046 (1265)
.+-..+ .+++.. .|. .++..+...+|+. ..|..+..|+..+.
T Consensus 205 ~lLCvS~~e~F~~-~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLl 248 (552)
T PF14222_consen 205 TLLCVSPKEFFLS-NWLPSLIESLISKLKDK--ETRPVALECLSRLL 248 (552)
T ss_pred HHHhcCcHHHHHH-HHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHH
Confidence 544443 344333 388 5887777777764 78888888888775
No 278
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.35 E-value=3.6e+02 Score=32.54 Aligned_cols=70 Identities=16% Similarity=0.299 Sum_probs=40.1
Q ss_pred CcccHHHHHhhcCCCchhHHHHHHHHHHHHHHHh--chhhhhhH---HhHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 000827 1086 PFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYI--GEMGKDYI---YAVTPLLEDALMDRDLVHRQTAASAVKHMA 1157 (1265)
Q Consensus 1086 p~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~i--g~~~~~yi---~~i~PlL~~~l~d~d~~~Rq~A~~~l~~la 1157 (1265)
|..++|+|+..++... .-+.+.--+-|+|..+ .+....|+ .+.--+|.+.+.|.+.++|..+-.++.-+|
T Consensus 588 ~a~~i~tlieLL~a~Q--eDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIia 662 (791)
T KOG1222|consen 588 PAKLIDTLIELLQACQ--EDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIA 662 (791)
T ss_pred ccccHHHHHHHHHhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 4467888777665431 1112222233444332 24444554 244567888889999999998877765554
No 279
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.49 E-value=4.8e+02 Score=33.68 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=22.7
Q ss_pred HHHHHHHhccCCC-HhHHHHHHHHHHHHHhhc
Q 000827 456 KIMKLLLKVKNGT-PPQRKTALRQLTDKAREF 486 (1265)
Q Consensus 456 ~i~~lll~lkn~~-~~vR~~A~r~L~~~A~~~ 486 (1265)
.|-+|...+.+.+ ..-|+.|+|.|...++.+
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srkY 54 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRKY 54 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Confidence 4555666666664 558999999998888865
No 280
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=60.12 E-value=1e+02 Score=36.01 Aligned_cols=111 Identities=21% Similarity=0.219 Sum_probs=65.9
Q ss_pred ccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHH-----HHHHHHHH
Q 000827 864 TSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQ-----LMGHLGVV 938 (1265)
Q Consensus 864 ~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~-----ll~~L~~~ 938 (1265)
+.++|..++ .+|..++... .-=...+..|.++|++.++.|-..|+.+++.++..++..|+.+ |...|..+
T Consensus 22 T~enW~~Il----DvCD~v~~~~-~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al 96 (462)
T KOG2199|consen 22 TSENWSLIL----DVCDKVGSDP-DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRAL 96 (462)
T ss_pred ccccHHHHH----HHHHhhcCCC-cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHH
Confidence 456675544 3344444333 2223467777799999999999999999999998777655432 23333322
Q ss_pred HHHhhC-CCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcC
Q 000827 939 LYEYLG-EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKN 987 (1265)
Q Consensus 939 L~~~L~-d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~ 987 (1265)
+ . ...+.|+..+-..+.+.++.+..+ |. =.+|+.|.+.|+.
T Consensus 97 ~----~~~~h~kV~~k~~~lv~eWsee~K~D---p~-lsLi~~l~~klk~ 138 (462)
T KOG2199|consen 97 I----ESKAHPKVCEKMRDLVKEWSEEFKKD---PS-LSLISALYKKLKE 138 (462)
T ss_pred H----hhcccHHHHHHHHHHHHHHHHHhccC---cc-hhHHHHHHHHHHH
Confidence 2 2 334667666666666666655332 11 1355555555543
No 281
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.57 E-value=5.2e+02 Score=33.43 Aligned_cols=244 Identities=13% Similarity=0.073 Sum_probs=124.5
Q ss_pred chHHHHHHHHHHHHHHhchhhhch---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---hh--cchHHHHHHHHH
Q 000827 866 DDANVMLNGFGAVVNSLGQRVKPY---LPQICGTIKWRLNNKSAKVRQQAADLISRIAVVM---KQ--CHEEQLMGHLGV 937 (1265)
Q Consensus 866 ed~~~al~aL~~I~~~lg~~~~p~---Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l---~~--~~~~~ll~~L~~ 937 (1265)
.+|..++.-|.++...-|..++.. .|.-++.|+..|.|.++-||..++.+|..++..- .+ .| +..+..|+.
T Consensus 137 ~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAF-ENaFerLfs 215 (970)
T KOG0946|consen 137 HVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAF-ENAFERLFS 215 (970)
T ss_pred hhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHH-HHHHHHHHH
Confidence 347789999999999888766544 4778899999999999999999999998887632 11 12 334444555
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHHHhCc--ccCCccHHhHHHHHHHHhc-----CC---CHHH-HHHHHHHHHHHHhh
Q 000827 938 VLYEYLGEEYPEVLGSILGALKAIVNVIGM--TKMTPPIKDLLPRLTPILK-----NR---HEKV-QENCIDLVGRIADR 1006 (1265)
Q Consensus 938 ~L~~~L~d~~~~V~~~al~aL~~lv~~~g~--~~l~p~l~~Llp~Ll~~L~-----~~---~~~V-re~ai~~ig~Ia~~ 1006 (1265)
++-+-=+-+-.-|..-++.-|.++...-.. ..|.. ..-+|+|..+|. +. .|.- |...+.+.=.|.+.
T Consensus 216 IIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE--~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~ 293 (970)
T KOG0946|consen 216 IIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE--GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRS 293 (970)
T ss_pred HHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc--cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHH
Confidence 442211111123556666666666543211 11110 234556654443 31 1222 22223332233332
Q ss_pred --CCC-CcChH-HH------HHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHhhC----------------cHHHHHHH
Q 000827 1007 --GAE-FVPAR-EW------MRICFELLEMLKAH--KKGIRRATVNTFGYIAKAIG----------------PQDVLATL 1058 (1265)
Q Consensus 1007 --~~~-~~~~~-e~------~~il~~LL~~Lk~~--~~~iR~~a~~tlg~Ia~~iG----------------p~~vlp~L 1058 (1265)
.+. ..... .. .+++..|...+-.+ ...|+..++.++..+.+..- |-..+..|
T Consensus 294 lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvl 373 (970)
T KOG0946|consen 294 LVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVL 373 (970)
T ss_pred hcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHH
Confidence 111 10000 00 12222233222222 46788888888877765431 11222222
Q ss_pred -HHh-hcccchhhHHHHHHHH-HHHHhhc-CCcccHHHHHhhcCCCch-hHHHHHHHHH
Q 000827 1059 -LNN-LKVQERQNRVCTTVAI-AIVAETC-SPFTVLPALMNEYRVPEL-NVQNGVLKSL 1112 (1265)
Q Consensus 1059 -l~~-L~~~e~~~R~~~~~ai-~~l~e~~-gp~~vlPaL~~~~~~~~~-~vq~~vl~al 1112 (1265)
|.. ...+...+|.++++++ +++.+.- |.-.++-.|+..+..... ++..|.|.+.
T Consensus 374 lmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~tllp~~~nst~Nsl~ag~l~~~ 432 (970)
T KOG0946|consen 374 LMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKTLLPSSTNSTSNSLSAGQLLLV 432 (970)
T ss_pred HHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHHHhhhhccccccchhhhhHHHH
Confidence 222 2344556787777764 4554432 333445555554443322 4555655544
No 282
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=58.53 E-value=19 Score=33.44 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHH
Q 000827 619 QARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEA 675 (1265)
Q Consensus 619 ~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~ 675 (1265)
..||+++..|+.+.......+-++++.++..|....+| ...|+..+-.+|+.+=..
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHh
Confidence 47899999999877777778889999999999999987 667888777777666544
No 283
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=56.79 E-value=38 Score=36.58 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=56.2
Q ss_pred HHHHHHhhhC----hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHH
Q 000827 591 AFSVVASALG----IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITA 666 (1265)
Q Consensus 591 ~l~~lA~~lg----~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~ 666 (1265)
+++.++.++. |+.+++.+.+-.++..-|..|-+.+..+.. +.=.+++..+++++...+.|.+..||.+--
T Consensus 102 vvD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~------~k~~~~~~~if~i~E~~l~d~e~fV~KAig 175 (222)
T COG4912 102 VVDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVY------KKKTLDLLEIFEIIELLLGDKEFFVQKAIG 175 (222)
T ss_pred HHHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHH------hcCccchhHHHHHHHHHccChHHHHHHHHH
Confidence 4555555532 899999997666665557544443333331 111345668999999999999999999999
Q ss_pred HHHHHHHHH
Q 000827 667 LSLAALAEA 675 (1265)
Q Consensus 667 ~aL~~lae~ 675 (1265)
++|.+++..
T Consensus 176 WaLrq~~k~ 184 (222)
T COG4912 176 WALRQIGKH 184 (222)
T ss_pred HHHHHHHhh
Confidence 999999874
No 284
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=55.82 E-value=3e+02 Score=29.84 Aligned_cols=138 Identities=10% Similarity=0.047 Sum_probs=81.9
Q ss_pred cCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhcCCCCCHHH-HHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhcc
Q 000827 465 KNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQE-RHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLI 543 (1265)
Q Consensus 465 kn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~~~led~~-R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ 543 (1265)
.++.-..|..|+..|...-+.+.. ..+..+..++-. .-+|.. ...+..+++.+. .+-+.+...+.....
T Consensus 56 ~~~~~E~r~~al~~l~~~~~~~~~-~~~~~~~~~l~~-~~~Wd~vD~~~~~i~g~~~--------~~~~~~~~~l~~W~~ 125 (208)
T cd07064 56 QQPEREYQYVAIDLLRKYKKFLTP-EDLPLLEELITT-KSWWDTVDSLAKVVGGILL--------ADYPEFEPVMDEWST 125 (208)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHcC-CchHHHHHHHHHHHhHHHH--------hCChhHHHHHHHHHc
Confidence 454455777777766664333322 233334443333 335542 222223333322 122233456666667
Q ss_pred CCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhChhhHHHHHHHHHc
Q 000827 544 DEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQ 613 (1265)
Q Consensus 544 ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~~l~ 613 (1265)
+++.-+|..|..+.-...+..-.+.+...+...+.+++.+|+++++-+|-.++.. ....++.||.....
T Consensus 126 s~~~W~rR~ai~~~l~~~~~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~-d~~~V~~fl~~~~~ 194 (208)
T cd07064 126 DENFWLRRTAILHQLKYKEKTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKT-NPDWVRDFVAAHKL 194 (208)
T ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHhhh
Confidence 8888888877544333334434455556677778889999999999999998877 46789999987643
No 285
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.27 E-value=3.9e+02 Score=30.99 Aligned_cols=51 Identities=22% Similarity=0.195 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhchh-h--hchHH-HHHHHHHHHhcCC-C-HHHHHHHHHHHHHHH
Q 000827 869 NVMLNGFGAVVNSLGQR-V--KPYLP-QICGTIKWRLNNK-S-AKVRQQAADLISRIA 920 (1265)
Q Consensus 869 ~~al~aL~~I~~~lg~~-~--~p~Lp-~ilp~Ll~~L~d~-~-~~VR~~A~~~lg~La 920 (1265)
...+.+|..+...|-.+ + +-++. .+++.|+..|+.. + ..||+ ++|++.-+.
T Consensus 162 dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRe-l~~a~r~l~ 218 (461)
T KOG4199|consen 162 EVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRE-LYDAIRALL 218 (461)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHH-HHHHHHHhc
Confidence 35555666555554321 1 22333 2667777666643 3 34554 667766554
No 286
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.59 E-value=8.1e+02 Score=34.16 Aligned_cols=92 Identities=13% Similarity=0.061 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhc-hhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCC
Q 000827 869 NVMLNGFGAVVNSLG-QRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEY 947 (1265)
Q Consensus 869 ~~al~aL~~I~~~lg-~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~ 947 (1265)
.-+++-|+.+++... ...++++|......-++..|.+..||.++...+..+...+++.. .++++.+++..+-+-.|.+
T Consensus 59 ~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l-sp~LK~li~~wl~~~~d~~ 137 (1312)
T KOG0803|consen 59 IKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL-SPFLKSLIPPWLGGQFDLD 137 (1312)
T ss_pred HHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhhhhhhheecccc
Confidence 345555555555443 23445566666666788999999999999999999988877643 3566666666554445666
Q ss_pred HHHHHHHHHHHHHH
Q 000827 948 PEVLGSILGALKAI 961 (1265)
Q Consensus 948 ~~V~~~al~aL~~l 961 (1265)
..|...|...+...
T Consensus 138 ~~vs~aa~~sf~~~ 151 (1312)
T KOG0803|consen 138 YPVSEAAKASFKDG 151 (1312)
T ss_pred hHHHHHHHHHHHhh
Confidence 66766666555554
No 287
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=53.57 E-value=69 Score=31.34 Aligned_cols=71 Identities=24% Similarity=0.305 Sum_probs=50.0
Q ss_pred hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHH
Q 000827 601 IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVL-PHLRSLVEIIEHGLNDENQKVRTITALSLAALAEA 675 (1265)
Q Consensus 601 ~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~-p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~ 675 (1265)
++.++|++...+...+..+.|-++++++++++.... +. .-++.++..+......... ...+..++..+...
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSDEVLNALMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 457899999999843446899999999999987654 33 3466677777766665544 45566777776643
No 288
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=52.16 E-value=1e+02 Score=30.73 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhc--c----h---------HHHHHHHHHHHHHhhCC---C-CHHHHH
Q 000827 892 QICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQC--H----E---------EQLMGHLGVVLYEYLGE---E-YPEVLG 952 (1265)
Q Consensus 892 ~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~--~----~---------~~ll~~L~~~L~~~L~d---~-~~~V~~ 952 (1265)
.+++.++..++. ++........++..+.+-+... . + ...++.++.++...+.. . ..++..
T Consensus 26 ~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~ 104 (148)
T PF08389_consen 26 DFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVK 104 (148)
T ss_dssp THHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHH
T ss_pred hHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 344444455554 3555555566666665544320 0 0 01133344444444432 2 277888
Q ss_pred HHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000827 953 SILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLV 1000 (1265)
Q Consensus 953 ~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~i 1000 (1265)
.++.++...+..+....+.. ..+++.++..|.+++ .++.|++|+
T Consensus 105 ~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 105 AALKCLKSWISWIPIELIIN--SNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 89999999887443322221 348888888886554 588888875
No 289
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=51.85 E-value=67 Score=33.17 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=57.1
Q ss_pred CCChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhh-HHHHHHHHH
Q 000827 656 DENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYY-TKEVMFILI 734 (1265)
Q Consensus 656 De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~-~~~im~~L~ 734 (1265)
.....+|..+..++.++.+.....+.+.+..++..++..-... .+..++.++..+.|.....-...+ .+.+++.+.
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d---~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~ 92 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMD---SLIIAFSALTALFPGPPDVGSELFLSEGFLESLL 92 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC---HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccch---hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHH
Confidence 3457899999999999975554444444444444444322211 233344455555554433222222 234566666
Q ss_pred HHhC--CCCHHHHHHHHHHHHHhhhc
Q 000827 735 REFQ--SPDEEMKKIVLKVVKQCVST 758 (1265)
Q Consensus 735 ~~l~--~~de~~r~~al~~l~~~~~~ 758 (1265)
.... ..+..+...+++++...|..
T Consensus 93 ~~~~~~~~~~~~~~~~lell~aAc~d 118 (157)
T PF11701_consen 93 PLASRKSKDRKVQKAALELLSAACID 118 (157)
T ss_dssp HHHH-CTS-HHHHHHHHHHHHHHTTS
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHcc
Confidence 6665 67888888899988876643
No 290
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=51.45 E-value=70 Score=29.80 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=45.1
Q ss_pred chhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCC--ChhhHHHHHHHHHHHH
Q 000827 616 KSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDE--NQKVRTITALSLAALA 673 (1265)
Q Consensus 616 ~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De--~~~VR~~A~~aL~~la 673 (1265)
+.|..|+-|..+++.||...+.....--+.|+..+.+.+.|+ ....+.-|+.+|..|.
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 359999999999999999887644444457888888888886 4567788888887774
No 291
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=50.36 E-value=16 Score=28.61 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.0
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHH
Q 000827 644 RSLVEIIEHGLNDENQKVRTITALS 668 (1265)
Q Consensus 644 ~~ll~~l~~~L~De~~~VR~~A~~a 668 (1265)
+.+...|...+.|+++.||.+|+..
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4788889999999999999998764
No 292
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=49.44 E-value=1.6e+02 Score=29.78 Aligned_cols=77 Identities=9% Similarity=0.116 Sum_probs=54.7
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCC-CCcChHHHHHHHHHHHHHHhh------chHHHHHHHHHHHHHHHH
Q 000827 975 KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGA-EFVPAREWMRICFELLEMLKA------HKKGIRRATVNTFGYIAK 1047 (1265)
Q Consensus 975 ~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~-~~~~~~e~~~il~~LL~~Lk~------~~~~iR~~a~~tlg~Ia~ 1047 (1265)
.+.+..|...|++++..++..|+.++-.+.++.| .|-...---+++.++++.+.. ....+|......+..-+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5677788888899999999999999999999844 442111112455566666642 357788888888888887
Q ss_pred hhCc
Q 000827 1048 AIGP 1051 (1265)
Q Consensus 1048 ~iGp 1051 (1265)
++..
T Consensus 117 ~f~~ 120 (139)
T cd03567 117 ELPH 120 (139)
T ss_pred Hhcc
Confidence 7653
No 293
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=49.38 E-value=32 Score=32.77 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=47.6
Q ss_pred CcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCcc-chhhhHHhHHHHHHhhh
Q 000827 638 AVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPY-GIESFDSVLKPLWKGIR 696 (1265)
Q Consensus 638 ~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~-~~~~~~~iL~~L~~~l~ 696 (1265)
.+.||.+.++..+..++.+=.+.||.-+..-|.-+.+.++.. ...++..+++.++..+.
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLG 63 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHC
Confidence 367899999999999999999999999999999999998766 34455566666555543
No 294
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=49.35 E-value=6.4e+02 Score=31.71 Aligned_cols=153 Identities=12% Similarity=0.202 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHhchhh-hchHHHHHHHH-----HHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh
Q 000827 869 NVMLNGFGAVVNSLGQRV-KPYLPQICGTI-----KWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEY 942 (1265)
Q Consensus 869 ~~al~aL~~I~~~lg~~~-~p~Lp~ilp~L-----l~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~ 942 (1265)
...+=|+|+|...+.+.. +.|+-.++.-| .+.-+|....|-......+|+.-+.++. +-.+|..++.-|++.
T Consensus 501 NtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLka--hw~FLkTVv~KLFEF 578 (1053)
T COG5101 501 NTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKA--HWSFLKTVVKKLFEF 578 (1053)
T ss_pred hHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHH--HHHHHHHHHHHHHHH
Confidence 345566666666655422 33333333333 3445666777777777777777666653 235788888888898
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHhCccc-------CCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHH
Q 000827 943 LGEEYPEVLGSILGALKAIVNVIGMTK-------MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPARE 1015 (1265)
Q Consensus 943 L~d~~~~V~~~al~aL~~lv~~~g~~~-------l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e 1015 (1265)
+.+....|+..+|..+-.|++.+.-+. -.|++..|+.-|-..-.+-...-.....++.|.+.+..+..-.
T Consensus 579 MhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~~~~--- 655 (1053)
T COG5101 579 MHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKTRD--- 655 (1053)
T ss_pred HhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHHHhccchhhH---
Confidence 888888999999999999999875332 2577777776665554444444455667777877765433222
Q ss_pred HHHHHHHHHHH
Q 000827 1016 WMRICFELLEM 1026 (1265)
Q Consensus 1016 ~~~il~~LL~~ 1026 (1265)
..+++..+++.
T Consensus 656 ~~rlv~dlm~L 666 (1053)
T COG5101 656 YKRLVLDLMDL 666 (1053)
T ss_pred HHHHHHHHHHh
Confidence 23555555543
No 295
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=49.11 E-value=3e+02 Score=27.85 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchH-----HHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHHHHH
Q 000827 892 QICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEE-----QLMGHLGVVLYEY-LG-EEYPEVLGSILGALKAIVNV 964 (1265)
Q Consensus 892 ~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~-----~ll~~L~~~L~~~-L~-d~~~~V~~~al~aL~~lv~~ 964 (1265)
..+..|...|+++++.|...|..++-.+++..+..|+. .+++.|..++-.. .+ ...+.|+..++.-+..-...
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46677889999999999999999999888877766653 3566666655321 12 34678999999999999888
Q ss_pred hC
Q 000827 965 IG 966 (1265)
Q Consensus 965 ~g 966 (1265)
+.
T Consensus 118 f~ 119 (139)
T cd03567 118 LP 119 (139)
T ss_pred hc
Confidence 75
No 296
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=48.79 E-value=3.5e+02 Score=29.34 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHH
Q 000827 601 IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEA 675 (1265)
Q Consensus 601 ~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~ 675 (1265)
-+.+.+.+...+.|++-| .|++|+.+.- ...-. .....+..++...+.|++.-|+.+..++|..++..
T Consensus 113 ~~~~~~~l~~W~~s~~~W-~rR~ai~~~l--~~~~~----~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 113 YPEFEPVMDEWSTDENFW-LRRTAILHQL--KYKEK----TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred ChhHHHHHHHHHcCCcHH-HHHHHHHHHH--HHHHc----cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 345667888888898878 5555554322 21111 23466777888899999999999999999887754
No 297
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.59 E-value=9.3e+02 Score=33.39 Aligned_cols=241 Identities=17% Similarity=0.202 Sum_probs=117.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCcccCC--ccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHH
Q 000827 945 EEYPEVLGSILGALKAIVNVIGMTKMT--PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFE 1022 (1265)
Q Consensus 945 d~~~~V~~~al~aL~~lv~~~g~~~l~--p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~ 1022 (1265)
.+..+|+.+-+.++-.+.+..|...+. +++-+++..+++.-...+.++-..+..++-.|..-+-.-+|. ..+..
T Consensus 853 ~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~----sci~~ 928 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPT----SCILD 928 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCCh----HHHHH
Confidence 445678888899999999999865443 445555554443333334555566666666665532222332 23333
Q ss_pred HHHHHhhc-----hHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHH------
Q 000827 1023 LLEMLKAH-----KKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP------ 1091 (1265)
Q Consensus 1023 LL~~Lk~~-----~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlP------ 1091 (1265)
+++.+... +.++-..|+.-|=.+...+ ..=+. ...| ..|....+-.+-.......++|
T Consensus 929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl------~~km~--S~se---d~~~~~~~e~~~ss~~~~~~l~e~lwi~ 997 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFL------KNKMF--STSE---DSCAYNSVEDLYSSMKSKEILPEVLWIM 997 (1610)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHHH------Hhhhh--ccch---hhhhhcchhhhcccccchhhhhhHHHHH
Confidence 33333222 2223223332222222111 10000 0000 0111111111100000011222
Q ss_pred ---HHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhh------hHHhHHHHHHH-------HhccC-C-hhHHHHHHHHH
Q 000827 1092 ---ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKD------YIYAVTPLLED-------ALMDR-D-LVHRQTAASAV 1153 (1265)
Q Consensus 1092 ---aL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~------yi~~i~PlL~~-------~l~d~-d-~~~Rq~A~~~l 1153 (1265)
.|.+.-.+....|+|+++++|-.+|...|..... ++.-++|+|.. -.+.+ . ..+-++.+-++
T Consensus 998 ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~lti 1077 (1610)
T KOG1848|consen 998 LLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTI 1077 (1610)
T ss_pred HHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhH
Confidence 2333344555679999999887777655543222 34667788772 11111 1 23344555555
Q ss_pred HHHHhccc--------CCCchhHHHHHHHhhhhhcccCChHHHHHHHHHHHHHHH
Q 000827 1154 KHMALGVA--------GLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRV 1200 (1265)
Q Consensus 1154 ~~lal~~~--------g~~~e~~~~~~ln~l~~~i~~~s~~v~~~~~~a~~~~~~ 1200 (1265)
..++.-.. -.+|-+....++.++--.++..++++--+++.+|..+..
T Consensus 1078 sgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1078 SGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 55442111 123445555666666666788999999898888877665
No 298
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=48.52 E-value=47 Score=32.74 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=17.2
Q ss_pred HHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHh
Q 000827 453 KERKIMKLLLK-VKNGTPPQRKTALRQLTDKAR 484 (1265)
Q Consensus 453 ~~~~i~~lll~-lkn~~~~vR~~A~r~L~~~A~ 484 (1265)
.-..|+.+|.+ |++.++.|+..++|.|..++.
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~ 67 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCE 67 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHh
Confidence 33455555543 566565565555555555444
No 299
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=47.84 E-value=8e+02 Score=32.42 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=6.1
Q ss_pred hchHHHHHHHHH
Q 000827 887 KPYLPQICGTIK 898 (1265)
Q Consensus 887 ~p~Lp~ilp~Ll 898 (1265)
+|-||.++..|.
T Consensus 349 ~psLp~iL~lL~ 360 (802)
T PF13764_consen 349 RPSLPYILRLLR 360 (802)
T ss_pred CCcHHHHHHHHH
Confidence 455555554443
No 300
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=47.58 E-value=43 Score=32.77 Aligned_cols=69 Identities=10% Similarity=0.157 Sum_probs=44.7
Q ss_pred HhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCCC---CcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 000827 975 KDLLPRLTPILKN-RHEKVQENCIDLVGRIADRGAE---FVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIA 1046 (1265)
Q Consensus 975 ~~Llp~Ll~~L~~-~~~~Vre~ai~~ig~Ia~~~~~---~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia 1046 (1265)
-+++..|+.+|.. .+..+...|+.=||.+++.-+. ++... ..=..+++++..++..+|..|..|++.+.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~l---g~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKL---GAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHH---SHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhc---ChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4688888888844 4566777788889999887332 11111 11123455667788999999999988764
No 301
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=47.44 E-value=23 Score=26.72 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=22.4
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 000827 646 LVEIIEHGLNDENQKVRTITALSLAALA 673 (1265)
Q Consensus 646 ll~~l~~~L~De~~~VR~~A~~aL~~la 673 (1265)
.++.+.+.+..+++.++..|+++|.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3555666666788999999999999886
No 302
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=47.30 E-value=9.4e+02 Score=33.09 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=45.2
Q ss_pred HHhhhhhcccCChHHHHHHHHHHHHHHHHh-----CHHHHHHHHHHhhcchhhHHHHHHHHHhhhh
Q 000827 1173 LNYVWPNIFETSPHVINAVMEAIEGMRVAL-----GAAVVLNYCLQGLFHPARKVREVYWKIYNSL 1233 (1265)
Q Consensus 1173 ln~l~~~i~~~s~~v~~~~~~a~~~~~~~~-----g~~~~~~~~~~gl~~~a~~vr~~~~~~~~~~ 1233 (1265)
+..++.-.+..++.|-..++.++..+.... ....+++.++-++-|+.++||+..-+++..+
T Consensus 505 l~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~L 570 (1120)
T PF14228_consen 505 LDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRAL 570 (1120)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHH
Confidence 333334445567888888888887777533 3356799999999999999999998876654
No 303
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=47.26 E-value=3.9e+02 Score=36.54 Aligned_cols=54 Identities=24% Similarity=0.226 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Q 000827 510 HLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKA 563 (1265)
Q Consensus 510 ~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~ 563 (1265)
+.++-++..++..-...++.|++.||.++.-++-...+.|++.|++.|.+|+..
T Consensus 934 qlalifL~dl~~~~~~~~~~~lP~LLH~~~~~lDH~~~~V~e~a~~lL~~Li~~ 987 (1120)
T PF14228_consen 934 QLALIFLVDLAVEPDEDLREHLPLLLHVIFVLLDHYTPLVQEQARELLVNLIHS 987 (1120)
T ss_pred HHHHHHHHHHHcCCcchHhhhhHHHHHHHHHcccCCChHHHHHHHHHHHHHHHH
Confidence 356666777776667778899999999999998888999999999999998765
No 304
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=47.26 E-value=85 Score=30.76 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhhcchHHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 000827 892 QICGTIKWRLNN-KSAKVRQQAADLISRIAVVMKQCHEEQLMGHL--GVVLYEYLGEEYPEVLGSILGALKAIVN 963 (1265)
Q Consensus 892 ~ilp~Ll~~L~d-~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L--~~~L~~~L~d~~~~V~~~al~aL~~lv~ 963 (1265)
+++..|+.+|.. .++.+-..||.=||.++...... ..++..+ ...+++.+..++++|+-.|+.|+..++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g--r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG--RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG--HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH--HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 455566677733 36677777888888888876431 3355443 3356777889999999999999998864
No 305
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=46.43 E-value=3.9e+02 Score=28.39 Aligned_cols=68 Identities=12% Similarity=0.208 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhh
Q 000827 977 LLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAI 1049 (1265)
Q Consensus 977 Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~i 1049 (1265)
.++.++++.-+.+..+|..|+..++.+.+.| ++++. ..++.++.+..+++..+|..|...+..+.+..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qG--LvnP~---~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQG--LVNPK---QCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC--CCChH---HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 3455556666889999999999999998864 45554 56777777778889999999999999987654
No 306
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.07 E-value=8.2e+02 Score=32.04 Aligned_cols=129 Identities=12% Similarity=0.046 Sum_probs=75.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcHH----HHH
Q 000827 981 LTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQD----VLA 1056 (1265)
Q Consensus 981 Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~----vlp 1056 (1265)
|=..|+.....-+-.++..+.++-..++.- -+ ....+..|-+.+.+...-+|.+....++.-.+.+.+-. ++.
T Consensus 29 ldkGlr~~~t~eqpeavvr~~RLFek~Pfp--if-iNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE~lr 105 (970)
T KOG1988|consen 29 LDKGLRSGKTSEQPEAVVRFPRLFEKYPFP--IF-INSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAEFLR 105 (970)
T ss_pred HhhcccccccccchHHHHHHHHHHhhCCch--hh-hhHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhhhhhhhhh
Confidence 444455555445555555666655543311 11 22456666777777788899999999887555554432 222
Q ss_pred HHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhh-c-CCCchhHHHHHHHHH
Q 000827 1057 TLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNE-Y-RVPELNVQNGVLKSL 1112 (1265)
Q Consensus 1057 ~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~-~-~~~~~~vq~~vl~al 1112 (1265)
.........++.-|...+.-+|.+...+.++...+.++.. + ...++.++.++..+-
T Consensus 106 ri~~V~hsnDp~aRAllL~ilg~~s~lipEfn~~hhlIr~sl~S~helE~eaa~~Aaa 163 (970)
T KOG1988|consen 106 RIFYVDHSNDPVARALLLRILGQLSALIPEFNQVHHLIRISLDSHHELEVEAAEFAAA 163 (970)
T ss_pred eeEEeecCCCHHHHHHHHHHHHHhhhhcccccchhHHHHHHhcCccchhhHHHHHHHh
Confidence 2223344566666666666677777777777777877765 3 233666777655443
No 307
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=45.83 E-value=3.4e+02 Score=27.53 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhchhhhchHH--HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHhh
Q 000827 869 NVMLNGFGAVVNSLGQRVKPYLP--QICGTIKWRLN-NKSAKVRQQAADLISRIAVVMKQ 925 (1265)
Q Consensus 869 ~~al~aL~~I~~~lg~~~~p~Lp--~ilp~Ll~~L~-d~~~~VR~~A~~~lg~La~~l~~ 925 (1265)
-.++..|.+++..||..|...+. .++..|..++. ..++.|++.++.+|..-+..++.
T Consensus 59 l~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 59 LYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 35778889999999987643332 24444555555 57899999999998888877654
No 308
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=45.38 E-value=94 Score=31.36 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=54.7
Q ss_pred cHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCC-CC---cChHHHHHHHHHHHHHHhhc--hHH--HHHHHHHHHHH
Q 000827 973 PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGA-EF---VPAREWMRICFELLEMLKAH--KKG--IRRATVNTFGY 1044 (1265)
Q Consensus 973 ~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~-~~---~~~~e~~~il~~LL~~Lk~~--~~~--iR~~a~~tlg~ 1044 (1265)
...+.+..|...|++.+..++..|+.++..+.+++| .| +..+ +++..|.+.++.. ... +|..+...+..
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~---~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASK---EFLDELVKLIKSKKTDPETPVKEKILELLQE 115 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH---HHHHHHHHHHHHTTTHHHSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHH---HHHHHHHHHHccCCCCchhHHHHHHHHHHHH
Confidence 457788889999999999999999999999999954 33 2222 3344444444443 222 88888888888
Q ss_pred HHHhhCc
Q 000827 1045 IAKAIGP 1051 (1265)
Q Consensus 1045 Ia~~iGp 1051 (1265)
.+..++.
T Consensus 116 W~~~f~~ 122 (140)
T PF00790_consen 116 WAEAFKS 122 (140)
T ss_dssp HHHHTTT
T ss_pred HHHHHCC
Confidence 8888743
No 309
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=44.68 E-value=2.7e+02 Score=27.78 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=56.8
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCC-CcChHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHhh
Q 000827 974 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAE-FVPAREWMRICFELLEMLKA---HKKGIRRATVNTFGYIAKAI 1049 (1265)
Q Consensus 974 l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~-~~~~~e~~~il~~LL~~Lk~---~~~~iR~~a~~tlg~Ia~~i 1049 (1265)
-.+.+..|...|+..+..++..|+.++..+.++++. |....---..+..+++.+.. ....+|..+...+...+..+
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 467788888889999999999999999999999654 42211011444555555554 36778888888888888877
Q ss_pred Cc
Q 000827 1050 GP 1051 (1265)
Q Consensus 1050 Gp 1051 (1265)
+.
T Consensus 115 ~~ 116 (133)
T cd03561 115 GG 116 (133)
T ss_pred cC
Confidence 64
No 310
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=44.48 E-value=2.7e+02 Score=35.08 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=52.3
Q ss_pred CchHHHHHHHHHHHHHHHhhh--ChhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCC
Q 000827 579 NIDEYVRNTTARAFSVVASAL--GIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLND 656 (1265)
Q Consensus 579 ~~d~~vR~~aa~~l~~lA~~l--g~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~D 656 (1265)
..++++...+--+++...+.. ..+..+..|...+++.+ -..|-+++.-|| ....|. .-.+++..+...+.|
T Consensus 426 s~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~-s~~ri~aIlGLg--layaGs----q~e~V~~lL~Pi~~d 498 (878)
T KOG2005|consen 426 SDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSS-SIHRIGAILGLG--LAYAGS----QREEVLELLSPIMFD 498 (878)
T ss_pred cCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCC-ceeehHHhhhhH--HhhcCC----chHHHHHHHhHHhcC
Confidence 344455544444444333322 15677888888888876 568888888888 444553 233444455666666
Q ss_pred CC--hhhHHHHHHHHHHHH
Q 000827 657 EN--QKVRTITALSLAALA 673 (1265)
Q Consensus 657 e~--~~VR~~A~~aL~~la 673 (1265)
.+ +.|...|..+||.+.
T Consensus 499 ~~~~~ev~~~aslsLG~If 517 (878)
T KOG2005|consen 499 TKSPMEVVAFASLSLGMIF 517 (878)
T ss_pred CCCchhHHHHHHhhcceeE
Confidence 54 457666666666653
No 311
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.26 E-value=5.7e+02 Score=29.72 Aligned_cols=149 Identities=13% Similarity=0.100 Sum_probs=85.2
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHhhcc------hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000827 894 CGTIKWRLNNK-SAKVRQQAADLISRIAVVMKQCH------EEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 966 (1265)
Q Consensus 894 lp~Ll~~L~d~-~~~VR~~A~~~lg~La~~l~~~~------~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g 966 (1265)
+.+++.++.|. ...+|..+-.+++-|...-+... +..-+++++..+...++ +|-|.+.+|.++.-++-..
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~--~p~Vi~~~~a~i~~l~LR~- 361 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSD--DPLVIQEVMAIISILCLRS- 361 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCC--ChHHHHHHHHHHHHHHhcC-
Confidence 45667888884 45677555444444443333211 12235556655554443 5778888888887776332
Q ss_pred cccCCccH-HhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 000827 967 MTKMTPPI-KDLLPRLTPILKNR--HEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFG 1043 (1265)
Q Consensus 967 ~~~l~p~l-~~Llp~Ll~~L~~~--~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg 1043 (1265)
++.-..++ ...-...++.++.+ +..||.+++..|-.|+..+.++-... +.-=...|+.+.+...+.++..+-.++-
T Consensus 362 pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~-l~~GiE~Li~~A~~~h~tce~~akaALR 440 (461)
T KOG4199|consen 362 PDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTIL-LANGIEKLIRTAKANHETCEAAAKAALR 440 (461)
T ss_pred cchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchH-HhccHHHHHHHHHhcCccHHHHHHHHHH
Confidence 11101111 11222345556654 36799999999999999877764432 1112345666667777777777777766
Q ss_pred HHH
Q 000827 1044 YIA 1046 (1265)
Q Consensus 1044 ~Ia 1046 (1265)
.++
T Consensus 441 DLG 443 (461)
T KOG4199|consen 441 DLG 443 (461)
T ss_pred hcC
Confidence 553
No 312
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=43.84 E-value=54 Score=33.86 Aligned_cols=97 Identities=19% Similarity=0.262 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH---HHhCcccCCccHHhHHHH
Q 000827 904 KSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIV---NVIGMTKMTPPIKDLLPR 980 (1265)
Q Consensus 904 ~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv---~~~g~~~l~p~l~~Llp~ 980 (1265)
..+.||..+.-++.++-+.-+..+ -..+...+...+.+...+-...++.++..+. -.+|..-|. -+.+++.
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~----~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~--~eg~~~~ 90 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEF----KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFL--SEGFLES 90 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCC--TTTHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHh--hhhHHHH
Confidence 466799999999988854333322 2223333333333222222222333333321 111111111 2467777
Q ss_pred HHHHhc--CCCHHHHHHHHHHHHHHHhh
Q 000827 981 LTPILK--NRHEKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 981 Ll~~L~--~~~~~Vre~ai~~ig~Ia~~ 1006 (1265)
+++... ..+..++..++++|..-+..
T Consensus 91 l~~~~~~~~~~~~~~~~~lell~aAc~d 118 (157)
T PF11701_consen 91 LLPLASRKSKDRKVQKAALELLSAACID 118 (157)
T ss_dssp HHHHHH-CTS-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHcc
Confidence 777777 66788999999999865543
No 313
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=43.74 E-value=55 Score=30.43 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh
Q 000827 507 QERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAA 564 (1265)
Q Consensus 507 ~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~ 564 (1265)
-.||.+|.-+..++.-.+--+.++++++|..|.....| ...++..+.++++..-+..
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH 60 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTH 60 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhC
Confidence 36899999999888888878889999999999999887 5668999999998877664
No 314
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=43.50 E-value=2.1e+02 Score=27.84 Aligned_cols=74 Identities=15% Similarity=0.138 Sum_probs=52.0
Q ss_pred chHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHh
Q 000827 888 PYLPQICGTIKWRLN-NKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI 965 (1265)
Q Consensus 888 p~Lp~ilp~Ll~~L~-d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~ 965 (1265)
.+++.++|++...|+ ...++.|-++.-.++.|+....- .++++..+...+......... ...++.+|..+++.-
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L--~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL--SDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 478999999999999 77899999999999999975432 245666666665544443332 345666666666543
No 315
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=43.30 E-value=68 Score=34.14 Aligned_cols=64 Identities=23% Similarity=0.362 Sum_probs=49.1
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHH
Q 000827 606 PFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEA 675 (1265)
Q Consensus 606 p~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~ 675 (1265)
+.+.....|++.| .|++|+.++...... ..++..++..+...+.|++..||.+..++|..++..
T Consensus 108 ~~~~~w~~s~~~~-~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEW-VRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHH-HHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 7778888888867 555555544432222 357889999999999999999999999999988765
No 316
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.15 E-value=5.7e+02 Score=29.42 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=58.5
Q ss_pred cccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh
Q 000827 863 QTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEY 942 (1265)
Q Consensus 863 ~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~ 942 (1265)
.++.++..++..+-.+...-+..+..|=...++.+++++++..+ -+.|+.++..++..-+ .+..+++.++..++..
T Consensus 15 ~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~--l~~~ll~~~~k~l~~~ 90 (353)
T KOG2973|consen 15 LSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE--LRKKLLQDLLKVLMDM 90 (353)
T ss_pred CChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHH
Confidence 34556666665544433332234555556678888899999887 4456666666665321 1234666677777777
Q ss_pred hCCCCHHHHHHHHHHHHHHHH
Q 000827 943 LGEEYPEVLGSILGALKAIVN 963 (1265)
Q Consensus 943 L~d~~~~V~~~al~aL~~lv~ 963 (1265)
+-++......-+|..|.++..
T Consensus 91 ~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 91 LTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred hcCcccchHHHHHHHHHHhcc
Confidence 766655555556666666654
No 317
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=42.11 E-value=6.6e+02 Score=29.87 Aligned_cols=216 Identities=13% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhh--CCCCcCh-H-----HHHHHHHHHHHHHhhc----hHHHHHHHHHHHHHHHHhhCc--------H
Q 000827 993 QENCIDLVGRIADR--GAEFVPA-R-----EWMRICFELLEMLKAH----KKGIRRATVNTFGYIAKAIGP--------Q 1052 (1265)
Q Consensus 993 re~ai~~ig~Ia~~--~~~~~~~-~-----e~~~il~~LL~~Lk~~----~~~iR~~a~~tlg~Ia~~iGp--------~ 1052 (1265)
++..+..|+.+.+. +-+..+. + .+...+..+++.++.+ ........+.++|.+.+.|++ +
T Consensus 32 ~~~l~~Ff~avG~~~~~lq~~s~~k~~m~~k~~~Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~llytksk~~ 111 (373)
T PF14911_consen 32 KEPLCQFFKAVGKRYQQLQTLSEGKSQMVTKLLEYFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQ 111 (373)
T ss_pred ccHHHHHHHHHHHHhhHhHhhHHHHHHHHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcchhheecCccc
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhc------------
Q 000827 1053 DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIG------------ 1120 (1265)
Q Consensus 1053 ~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig------------ 1120 (1265)
.+++.+++.+ +||+.+..-+.....+...+-|.+.-+++.+|
T Consensus 112 cll~~~vd~l--------------------------lLp~~l~~~k~l~~~l~~ai~k~lpl~lqGl~~~~~~~dayL~~ 165 (373)
T PF14911_consen 112 CLLFRIVDCL--------------------------LLPTVLQQDKPLPPALLQAIRKSLPLFLQGLGRLSQRQDAYLNQ 165 (373)
T ss_pred cHHHHHHHHh--------------------------cccccccCCCCCChHHHHHHHHHHHHHHHHHHhcccccChHHHH
Q ss_pred ---hhhhhhHHhHHHHHHHHhccC-----------ChhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhcccCChH
Q 000827 1121 ---EMGKDYIYAVTPLLEDALMDR-----------DLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPH 1186 (1265)
Q Consensus 1121 ---~~~~~yi~~i~PlL~~~l~d~-----------d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~~~s~~ 1186 (1265)
.+..+|+..+.|.--....-+ +...|+.+...+..-=+...|.-..+.+...+..+..-+-+..
T Consensus 166 ~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~~~~~l~~~il~~i~~~fl~~~~~~p~p~l~~vL~fl~~Ll~~~~-- 243 (373)
T PF14911_consen 166 QLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTPRNEELRKFILQVIRSNFLEFKGSAPPPRLASVLAFLQQLLKRLQ-- 243 (373)
T ss_pred HHHHHHHHHHhHhccCCCccccccccccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHhcC--
Q ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHh-hcchhhHHHHHHHHHhhhhhcccc
Q 000827 1187 VINAVMEAIEGMRVALGAAVVLNYCLQG-LFHPARKVREVYWKIYNSLYIGAQ 1238 (1265)
Q Consensus 1187 v~~~~~~a~~~~~~~~g~~~~~~~~~~g-l~~~a~~vr~~~~~~~~~~~~~~~ 1238 (1265)
.---.-+..+...+.++.+=-+++-. ..+-.+-+.+.+..+.++++.++.
T Consensus 244 --~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~ 294 (373)
T PF14911_consen 244 --RQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSS 294 (373)
T ss_pred --cccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCc
No 318
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.04 E-value=1.2e+03 Score=32.84 Aligned_cols=150 Identities=14% Similarity=0.193 Sum_probs=83.7
Q ss_pred HHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCccc
Q 000827 891 PQICGTIKW-RLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTK 969 (1265)
Q Consensus 891 p~ilp~Ll~-~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~ 969 (1265)
+.++..+.. ...+..|+||.++...+....-...--+.+.-...+...+...+.|...+|+..+..+|.-++..-.. .
T Consensus 1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~-~ 1603 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKF-Q 1603 (1710)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccc-c
Confidence 445555553 44567999999987776654432110011223445666666777888889999999999999875321 1
Q ss_pred CCccHHhHHHHHHHHhcCCC-HHH-HHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 000827 970 MTPPIKDLLPRLTPILKNRH-EKV-QENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIA 1046 (1265)
Q Consensus 970 l~p~l~~Llp~Ll~~L~~~~-~~V-re~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia 1046 (1265)
+.+ .........+.... ..+ .-.+.-.+|.++-+.+..+|. |++-....+.+...+...++.++.+|+..--
T Consensus 1604 ~~~---~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~--wip~~L~~Ls~fa~e~~~i~~tvkktvseFr 1677 (1710)
T KOG1851|consen 1604 FVS---DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPL--WIPKPLMNLSSFARESAAIKQTVKKTVSEFR 1677 (1710)
T ss_pred cch---HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchh--hhHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Confidence 221 22222222222221 223 356677888888887766665 2222222222333345667777777766543
No 319
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=41.07 E-value=5.7e+02 Score=28.84 Aligned_cols=144 Identities=15% Similarity=0.185 Sum_probs=78.9
Q ss_pred cHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-CCCcCh---H---HHHHHHHHHHHHHhhch-----HHHHHHHHH
Q 000827 973 PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG-AEFVPA---R---EWMRICFELLEMLKAHK-----KGIRRATVN 1040 (1265)
Q Consensus 973 ~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~-~~~~~~---~---e~~~il~~LL~~Lk~~~-----~~iR~~a~~ 1040 (1265)
..+.|.+.+++.|+... .-+.++..+..++... ...+.. . .+...++.++..+.++. ..++ .++.
T Consensus 61 ~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~-~~A~ 137 (262)
T PF14225_consen 61 NFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECI-EIAE 137 (262)
T ss_pred CchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHH-HHHH
Confidence 34667777887776654 4567778888877651 111100 1 23344555666665555 3343 4457
Q ss_pred HHHHHHHhhCcHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHhhcCCc---ccHHHHHhhcCCCchhHHHHHHHHHHHHH
Q 000827 1041 TFGYIAKAIGPQDVLATLLNNLKVQE-RQNRVCTTVAIAIVAETCSPF---TVLPALMNEYRVPELNVQNGVLKSLSFLF 1116 (1265)
Q Consensus 1041 tlg~Ia~~iGp~~vlp~Ll~~L~~~e-~~~R~~~~~ai~~l~e~~gp~---~vlPaL~~~~~~~~~~vq~~vl~al~~l~ 1116 (1265)
.++.+++.-|-..+-..+ ..+.... +....-....+..+.+++.|. .++-.|+.-+...-..+|..+++.+..++
T Consensus 138 ~La~~a~~~~~~~La~il-~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll 216 (262)
T PF14225_consen 138 ALAQVAEAQGLPNLARIL-SSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLL 216 (262)
T ss_pred HHHHHHHhCCCccHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHh
Confidence 788888765544333222 2221111 111112233345566777652 34445555554444468888999999998
Q ss_pred HHhc
Q 000827 1117 EYIG 1120 (1265)
Q Consensus 1117 ~~ig 1120 (1265)
+++.
T Consensus 217 ~~~d 220 (262)
T PF14225_consen 217 PHVD 220 (262)
T ss_pred cccc
Confidence 8874
No 320
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=40.45 E-value=9.3e+02 Score=31.11 Aligned_cols=197 Identities=20% Similarity=0.194 Sum_probs=96.7
Q ss_pred cchHHHHHHHHHHHHHHhc--hhhhchHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHhhc---chHHHHHHHHH
Q 000827 865 SDDANVMLNGFGAVVNSLG--QRVKPYLPQICGTIK--WRLNNKSAKVRQQAADLISRIAVVMKQC---HEEQLMGHLGV 937 (1265)
Q Consensus 865 ~ed~~~al~aL~~I~~~lg--~~~~p~Lp~ilp~Ll--~~L~d~~~~VR~~A~~~lg~La~~l~~~---~~~~ll~~L~~ 937 (1265)
++++...+.-+..|+..-. ..-..|+|-++..++ ..+.|.++.||..|..+..|+.+.+++. +-+++++.+.+
T Consensus 504 h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqd 583 (980)
T KOG2021|consen 504 HDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQD 583 (980)
T ss_pred CCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556655666655321 011235555555444 3567889999999999999999988764 23556777666
Q ss_pred HHHHh---hC---CC--CHHHHHHHHHHHHHHHHH----------hCcccCCccHHh-HHHHHHHHhcC-CCHHHH----
Q 000827 938 VLYEY---LG---EE--YPEVLGSILGALKAIVNV----------IGMTKMTPPIKD-LLPRLTPILKN-RHEKVQ---- 993 (1265)
Q Consensus 938 ~L~~~---L~---d~--~~~V~~~al~aL~~lv~~----------~g~~~l~p~l~~-Llp~Ll~~L~~-~~~~Vr---- 993 (1265)
.|-.. +. +. ..+=...+..+++-|+.. .-..-+.|-+.+ ++..+...|.. ....+.
T Consensus 584 lL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c 663 (980)
T KOG2021|consen 584 LLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAEC 663 (980)
T ss_pred HHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 65111 10 00 001111122222221100 001113333322 22222223332 222221
Q ss_pred HHHHHHHHHHHhhCCC-CcChH--HH----HHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHhhCcHH--HHHHHHHh
Q 000827 994 ENCIDLVGRIADRGAE-FVPAR--EW----MRICFELLEMLKA--HKKGIRRATVNTFGYIAKAIGPQD--VLATLLNN 1061 (1265)
Q Consensus 994 e~ai~~ig~Ia~~~~~-~~~~~--e~----~~il~~LL~~Lk~--~~~~iR~~a~~tlg~Ia~~iGp~~--vlp~Ll~~ 1061 (1265)
-.++-+||.+++.... -++.. .| ..++..++-.|.- ....+|.+..-+++.+...+|+.. .+|.++..
T Consensus 664 ~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~ 742 (980)
T KOG2021|consen 664 HHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIEL 742 (980)
T ss_pred HHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHH
Confidence 3445667777765111 11111 12 2333333333322 256789999999999999999863 45665554
No 321
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=40.15 E-value=3.5e+02 Score=26.98 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=52.5
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCC-CCcChHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHhhC
Q 000827 974 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGA-EFVPAREWMRICFELLEMLKAH--KKGIRRATVNTFGYIAKAIG 1050 (1265)
Q Consensus 974 l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~-~~~~~~e~~~il~~LL~~Lk~~--~~~iR~~a~~tlg~Ia~~iG 1050 (1265)
-.+.+..|...|++.+..++..|+.++..+.+++| .|-...---.++..|...++.. .+.+|..+...+...+.++.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 46778888889999999999999999999999844 3421110113334444444443 23388888888888877764
No 322
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=39.14 E-value=4.5e+02 Score=31.08 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhchhhhchH--HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHhh
Q 000827 869 NVMLNGFGAVVNSLGQRVKPYL--PQICGTIKWRLN-NKSAKVRQQAADLISRIAVVMKQ 925 (1265)
Q Consensus 869 ~~al~aL~~I~~~lg~~~~p~L--p~ilp~Ll~~L~-d~~~~VR~~A~~~lg~La~~l~~ 925 (1265)
--+|..++++++.||.+|.--+ .++...|..++. ..|++|++....++-..++.++.
T Consensus 63 L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 63 LQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred HHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 3466778899999998774322 346666677777 45999999988888887776654
No 323
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=39.12 E-value=5.7e+02 Score=28.38 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCcc-cCCcc-------HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000827 944 GEEYPEVLGSILGALKAIVNVIGMT-KMTPP-------IKDLLPRLTPILKNRHEKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 944 ~d~~~~V~~~al~aL~~lv~~~g~~-~l~p~-------l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~ 1006 (1265)
.|+++.|...++.|...+...+-.. ...+. +..+=..++..+.+.++.||..|+..+..+.-.
T Consensus 3 ~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~ 73 (239)
T PF11935_consen 3 NDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILV 73 (239)
T ss_dssp T-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 4556666666666655554332100 01111 233444566677888899999999999987654
No 324
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=38.84 E-value=8.1e+02 Score=29.95 Aligned_cols=204 Identities=17% Similarity=0.240 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHhhcCC---hhhHHH-HhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhh-hhhHHHHHHHHHhhccC
Q 000827 470 PQRKTALRQLTDKAREFGA---GPLFNR-ILPLLMQPTLEDQERHLLVKVIDRVLYKLDELV-RPYVHKILVVIEPLLID 544 (1265)
Q Consensus 470 ~vR~~A~r~L~~~A~~~G~---~~~~~~-iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v-~p~~~~Ll~~i~~lL~d 544 (1265)
..|..|+++|+.++..+.. ..+|.. +++.|.+. +--.|+.+--++.+.+......- .+....+...+...|.+
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~--sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~ 179 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSP--SATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILEN 179 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcC
Confidence 4788999999999988754 245664 55666544 44558877778887665433211 11023333344444442
Q ss_pred CCH-----------HHHHHHHHHHHHHHHHhch--HHHHHhhccCCC-----Cch----HHHHHHHHHHHHHHHhhhChh
Q 000827 545 EDY-----------YARVEGREIISNLSKAAGL--ATMIAAMRPDID-----NID----EYVRNTTARAFSVVASALGIP 602 (1265)
Q Consensus 545 ed~-----------~VR~~a~~il~~La~~~Gl--~~~~~~L~~~l~-----~~d----~~vR~~aa~~l~~lA~~lg~~ 602 (1265)
+.+ .+|.++...+..+... |. ..-+..|-...+ +++ +.+.+.+...+..+...++-.
T Consensus 180 ~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~-g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~~ 258 (441)
T PF12054_consen 180 PEPPYYDELVPSLKRLRTECQQLLATFRDV-GKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSPS 258 (441)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 211 2445544444444332 32 111111110001 111 123444444555555555411
Q ss_pred -hH--HHHHHH-------HHc-CCchhHHHHHHHHHHHHH-HHHhCCCcchhHHHHHHHHHhhcCC-CChhhHHHHHHHH
Q 000827 603 -AL--LPFLKA-------VCQ-SKKSWQARHTGIKIVQQI-AILIGCAVLPHLRSLVEIIEHGLND-ENQKVRTITALSL 669 (1265)
Q Consensus 603 -~L--lp~L~~-------~l~-s~~s~~~R~aal~~L~~i-~~~~g~~l~p~L~~ll~~l~~~L~D-e~~~VR~~A~~aL 669 (1265)
.+ +.-|.+ .+. -+..+..++..+.+...- ...++ .+-+-|+.|+..|...++- ++..++..++.+|
T Consensus 259 ~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~-~lP~KLnPiIrpLMdSIK~Een~~LQ~rsA~sl 337 (441)
T PF12054_consen 259 QKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALG-GLPKKLNPIIRPLMDSIKREENELLQQRSAESL 337 (441)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCccHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 11 122111 010 011133444433333221 22233 2333455566666666654 5789999999999
Q ss_pred HHHHHHhC
Q 000827 670 AALAEAAA 677 (1265)
Q Consensus 670 ~~lae~~~ 677 (1265)
+.|.+.+.
T Consensus 338 A~Li~~~~ 345 (441)
T PF12054_consen 338 ARLIQLCV 345 (441)
T ss_pred HHHHHHHh
Confidence 99998876
No 325
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.31 E-value=7.9e+02 Score=29.68 Aligned_cols=86 Identities=21% Similarity=0.361 Sum_probs=50.5
Q ss_pred ChhHHHHHHHHHHHHHhcccCCC-chhHHH--HHHHhhhhhccc---------CC-----hHHHHHHHHHHHHHHHHhCH
Q 000827 1142 DLVHRQTAASAVKHMALGVAGLG-CEDALV--HLLNYVWPNIFE---------TS-----PHVINAVMEAIEGMRVALGA 1204 (1265)
Q Consensus 1142 d~~~Rq~A~~~l~~lal~~~g~~-~e~~~~--~~ln~l~~~i~~---------~s-----~~v~~~~~~a~~~~~~~~g~ 1204 (1265)
.-+-|+.|..++.|...|..|.. |. -|. -.+.+++|.... .+ .||..-+|+-+..+ ....-
T Consensus 330 Kk~sr~SalkvLd~am~g~~gt~~C~-kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~-~~~~r 407 (536)
T KOG2734|consen 330 KKVSRGSALKVLDHAMFGPEGTPNCN-KFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL-DGVHR 407 (536)
T ss_pred HHHhhhhHHHHHHHHHhCCCchHHHH-HHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc-cccHH
Confidence 45678899999999988887653 33 222 235677777662 22 35666666655544 12222
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHH
Q 000827 1205 AVVLNYCLQGLFHPARKVREVYWKI 1229 (1265)
Q Consensus 1205 ~~~~~~~~~gl~~~a~~vr~~~~~~ 1229 (1265)
..++.-.....|.-..+.-+.|.|.
T Consensus 408 ~R~l~KF~End~EKvdRl~el~lky 432 (536)
T KOG2734|consen 408 QRLLRKFVENDFEKVDRLMELYLKY 432 (536)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHH
Confidence 3455555555555566666667665
No 326
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=37.50 E-value=1.3e+03 Score=32.03 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhh
Q 000827 641 PHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGI 695 (1265)
Q Consensus 641 p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l 695 (1265)
.+|++|+--+...+...+..+|.++-.+++++...++| +++..|++.+-..+
T Consensus 560 ~~L~~illkic~~l~~~s~e~rd~srktl~~i~k~Lg~---~yl~~Vi~el~~Tl 611 (1364)
T KOG1823|consen 560 RNLPSILLDICYLLRSRSAELRDASRKTLAKIIKILGP---KYLYFVIKELQTTL 611 (1364)
T ss_pred hcCcHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999977 44445555554443
No 327
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=35.89 E-value=1.1e+02 Score=27.98 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=43.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHhccCChhHHHHHHHHHH
Q 000827 1098 RVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVK 1154 (1265)
Q Consensus 1098 ~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l~d~d~~~Rq~A~~~l~ 1154 (1265)
+.++..+|+-+++|+..+.+..|.....=+..++..|..+..|.+..+-..|-..++
T Consensus 28 ~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 28 NNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 345667999999999999998887766667788888888888777766666665543
No 328
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=35.51 E-value=4.8e+02 Score=26.36 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHhhcchH-----HHHHH-HHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 000827 891 PQICGTIKWRLN-NKSAKVRQQAADLISRIAVVMKQCHEE-----QLMGH-LGVVLYEYLGEEYPEVLGSILGALKAIVN 963 (1265)
Q Consensus 891 p~ilp~Ll~~L~-d~~~~VR~~A~~~lg~La~~l~~~~~~-----~ll~~-L~~~L~~~L~d~~~~V~~~al~aL~~lv~ 963 (1265)
...+..|...|+ ++++.|...|..++..+++..+..|+. .+++. |..++... .+....|+..++.-+.+...
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~-~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPK-NNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHccc-CCCcHHHHHHHHHHHHHHHH
Confidence 457777888887 478999999999999888887776653 34554 44443211 12335899999999999998
Q ss_pred HhCcc
Q 000827 964 VIGMT 968 (1265)
Q Consensus 964 ~~g~~ 968 (1265)
.+..+
T Consensus 116 ~f~~~ 120 (141)
T cd03565 116 AFRGS 120 (141)
T ss_pred HhCCC
Confidence 88543
No 329
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=34.95 E-value=79 Score=30.06 Aligned_cols=62 Identities=11% Similarity=0.320 Sum_probs=50.0
Q ss_pred ccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCC-cChHHHHHHHHHHHHHHhhc
Q 000827 968 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEF-VPAREWMRICFELLEMLKAH 1030 (1265)
Q Consensus 968 ~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~-~~~~e~~~il~~LL~~Lk~~ 1030 (1265)
+.+.|+++.++..+...+.+-...||.-++..+..+.+..++. ++. .|.+++..+++++...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~-~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSG-GWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhh-hHHHHHHHHHHHHCCC
Confidence 3467889999999998888888999999999999999986655 333 3788888888777654
No 330
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=34.77 E-value=5e+02 Score=30.96 Aligned_cols=221 Identities=18% Similarity=0.224 Sum_probs=104.1
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcc--cchHHHHHHHHHHHHHHhchhhh
Q 000827 810 VGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQT--SDDANVMLNGFGAVVNSLGQRVK 887 (1265)
Q Consensus 810 l~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~--~ed~~~al~aL~~I~~~lg~~~~ 887 (1265)
+-.+++.+..++++-|...-..+-+|....-..- .....-+..+.+.|-..+ ..--.-.+..||+|.++...-++
T Consensus 179 vlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r---~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlK 255 (457)
T KOG2085|consen 179 VLKLLDLFDSEDPREREFLKTILHRIYGKFLVHR---PFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLK 255 (457)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhH---HHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcch
Confidence 3445666667777777766666666655332211 011111223333332211 11124567778888776553221
Q ss_pred -chHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHH
Q 000827 888 -PYLPQICGTIKWRLNNKSA-KVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGE--EYPEVLGSILGALKAIVN 963 (1265)
Q Consensus 888 -p~Lp~ilp~Ll~~L~d~~~-~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d--~~~~V~~~al~aL~~lv~ 963 (1265)
.|---++..|+++=+-+.- .-.++-+.++-++.+ .+..+...++..|+.++-- ...+| ..++-|.++.+
T Consensus 256 EEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfve-----Kd~kl~~~VIrglLK~WP~tnS~KEV--mFL~ElEEILe 328 (457)
T KOG2085|consen 256 EEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVE-----KDPKLTETVIRGLLKYWPKTNSSKEV--MFLNELEEILE 328 (457)
T ss_pred hHHHHHHHHhhhccccCCCccccccccceeeeeeec-----cCccccHHHHHHHHHhcCCCCCccee--eeHhhHHHHHH
Confidence 1111122223332221100 000111111111111 0112334444444443321 11222 34566777777
Q ss_pred HhCcccCCccHHhHHHHHHHHhcCCCHHHHHHHHHHHH------HHHhhCCCCcChHHHHHHHH-HHHHHHhhc-hHHHH
Q 000827 964 VIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVG------RIADRGAEFVPAREWMRICF-ELLEMLKAH-KKGIR 1035 (1265)
Q Consensus 964 ~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig------~Ia~~~~~~~~~~e~~~il~-~LL~~Lk~~-~~~iR 1035 (1265)
++.+..|...+..|...+-..+.+.|-.|-|.|+.... .|+.+..-++ +|++ .|-+..+.+ +..+-
T Consensus 329 ~iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~il------PiiFpaLyr~sk~hWN~~i~ 402 (457)
T KOG2085|consen 329 VIEPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVIL------PIVFPALYRNSKSHWNQAIH 402 (457)
T ss_pred hcCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceee------ehhhHHHHHHHHHHHHHHHH
Confidence 77777777777778888888888999888888876654 2333333332 3443 444444444 55555
Q ss_pred HHHHHHHHHHH
Q 000827 1036 RATVNTFGYIA 1046 (1265)
Q Consensus 1036 ~~a~~tlg~Ia 1046 (1265)
..+.+.+..+.
T Consensus 403 ~l~~nvlk~f~ 413 (457)
T KOG2085|consen 403 NLILNVLKTFM 413 (457)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 331
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=32.60 E-value=4.1e+02 Score=28.35 Aligned_cols=134 Identities=12% Similarity=0.118 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHHHHHhchhhhchHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh
Q 000827 866 DDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAK--VRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYL 943 (1265)
Q Consensus 866 ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll~~L~d~~~~--VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L 943 (1265)
.+|..|..+|..+. ..+..-.|++|. .+.|...+...+.. .-..+.++..++...+.. +.+...++.-+.-+.
T Consensus 22 rvR~~A~~~l~~ll-~~~~~~~~~ip~-~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~---~~y~~~ll~Glv~S~ 96 (193)
T PF12612_consen 22 RVREVAGKCLQRLL-HSQDPTIPHIPH-REELQDIFPSESEASLNWSSSSEYFPRLVKLLDL---PEYRYSLLSGLVVSA 96 (193)
T ss_pred HHHHHHHHHHHHHh-cCCCccccCCCc-HHHHHHHcccccccccccCCHHHHHHHHHHHhcc---HHHHHHHHhHHHhcC
Confidence 34667777777666 222222234442 23333444433321 112244455555554432 234444444444455
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhh
Q 000827 944 GEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRH--EKVQENCIDLVGRIADR 1006 (1265)
Q Consensus 944 ~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~--~~Vre~ai~~ig~Ia~~ 1006 (1265)
|.-...+...+..||-+.+.... .-...+..++..|+.+++++. .+|-.-++.++..|-..
T Consensus 97 G~~tesl~~~s~~AL~~~~~~~~--~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 97 GGLTESLVRASSAALLSYLRELS--DSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred CCCchhHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhC
Confidence 66556677777777777776431 112235666777777776532 34444555555555544
No 332
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=32.31 E-value=2.4e+02 Score=28.63 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=16.3
Q ss_pred ccCCCHhHHHHHHHHHHHH
Q 000827 464 VKNGTPPQRKTALRQLTDK 482 (1265)
Q Consensus 464 lkn~~~~vR~~A~r~L~~~ 482 (1265)
+.++++.+++.|++||-..
T Consensus 26 L~~~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 26 LSSRDPEVQKLALDCLLTW 44 (141)
T ss_pred HcCCCHHHHHHHHHHHHHh
Confidence 5889999999999999654
No 333
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=31.34 E-value=5.6e+02 Score=33.15 Aligned_cols=107 Identities=13% Similarity=0.120 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhhhCh--hhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCc-----chhHHHHHHHHHhhcC
Q 000827 583 YVRNTTARAFSVVASALGI--PALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAV-----LPHLRSLVEIIEHGLN 655 (1265)
Q Consensus 583 ~vR~~aa~~l~~lA~~lg~--~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l-----~p~L~~ll~~l~~~L~ 655 (1265)
|......+++.++...-.- ..++..|.+++..+ ..|..++..|+.+...-+..+ .|.+..|+.++ ..
T Consensus 48 ~~~t~s~~~~~il~~~~~P~~K~~~~~l~~~~~~~---~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L---~~ 121 (668)
T PF04388_consen 48 YLSTNSQRALEILVGVQEPHDKHLFDKLNDYFVKP---SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCL---QF 121 (668)
T ss_pred HhhcCcHHHHHHHHhcCCccHHHHHHHHHHHHcCc---hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHH---hh
Confidence 3444445566666543222 57888888877764 488888888887766544322 13334444443 45
Q ss_pred CCChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhh
Q 000827 656 DENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGI 695 (1265)
Q Consensus 656 De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l 695 (1265)
|.+..|-..|+.+|..|.-.+......++..++..+...+
T Consensus 122 D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 122 DTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred cccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Confidence 7888999999999998887776544444444444444433
No 334
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=31.18 E-value=1.8e+02 Score=28.75 Aligned_cols=72 Identities=19% Similarity=0.171 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHh-----hcCC------CChhhHHHHHHHH
Q 000827 601 IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEH-----GLND------ENQKVRTITALSL 669 (1265)
Q Consensus 601 ~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~-----~L~D------e~~~VR~~A~~aL 669 (1265)
..+++.+|...++++. ..++.-++.+|-++|..-...|...+..-...|.. +..| ....||..|-.++
T Consensus 36 ~~ei~d~L~kRL~~~~-~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 36 CQELLEYLLKRLKRSS-PHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHhcCCC-CcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 5688899998888754 67777888899888876443443333322222222 1123 3578999988877
Q ss_pred HHHH
Q 000827 670 AALA 673 (1265)
Q Consensus 670 ~~la 673 (1265)
..+.
T Consensus 115 ~~if 118 (122)
T cd03572 115 KAIF 118 (122)
T ss_pred HHHh
Confidence 6653
No 335
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=31.03 E-value=6.5e+02 Score=32.57 Aligned_cols=157 Identities=13% Similarity=0.165 Sum_probs=84.9
Q ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Q 000827 456 KIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKIL 535 (1265)
Q Consensus 456 ~i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll 535 (1265)
-|..++..+.+.+..+...+-..|.+.-..--..-+++.++.+-++. -+-+..+.++ . +=.||-+.++
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t-~s~~~~~il~--------~---~~~P~~K~~~ 72 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLST-NSQRALEILV--------G---VQEPHDKHLF 72 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhc-CcHHHHHHHH--------h---cCCccHHHHH
Confidence 35566666777776666655555544332211114667777776654 2443322221 1 1237777888
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhChhhHHHHHHHHHcCC
Q 000827 536 VVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSK 615 (1265)
Q Consensus 536 ~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~~l~s~ 615 (1265)
..|...+... .-|..+...|+.++..-. .|+-+ |+ -..|++-|..++.-+
T Consensus 73 ~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp----------------~~l~~--------i~----~t~Lf~~LLk~L~~D 122 (668)
T PF04388_consen 73 DKLNDYFVKP--SYRLQALTLLGHFVRSQP----------------PWLYK--------IL----QTPLFKSLLKCLQFD 122 (668)
T ss_pred HHHHHHHcCc--hhHHHHHHHHHHHHhcCC----------------chHHH--------Hh----cChhHHHHHHHHhhc
Confidence 8887777654 356666666666554311 00000 00 114555555555444
Q ss_pred chhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhc
Q 000827 616 KSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGL 654 (1265)
Q Consensus 616 ~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L 654 (1265)
.+.-.-.+|+.+|..+.=.+...+.+||+.|+.++..++
T Consensus 123 ~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 123 TSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred ccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Confidence 434445566666654433344467788988888887766
No 336
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.20 E-value=1.1e+03 Score=28.79 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=22.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000827 895 GTIKWRLNNKSAKVRQQAADLISRIAV 921 (1265)
Q Consensus 895 p~Ll~~L~d~~~~VR~~A~~~lg~La~ 921 (1265)
..++.++.|++..||..+-.++--+++
T Consensus 637 AylIDLMHDkN~eiRkVCDn~LdIiae 663 (791)
T KOG1222|consen 637 AYLIDLMHDKNAEIRKVCDNALDIIAE 663 (791)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 345688899999999998888887775
No 337
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=30.11 E-value=5.4e+02 Score=26.41 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhCC------C--CHHHHHHHHHHHHHHHHHhCcccCCccHHhHHHHHHHHhcCCC----------HHH
Q 000827 931 LMGHLGVVLYEYLGE------E--YPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRH----------EKV 992 (1265)
Q Consensus 931 ll~~L~~~L~~~L~d------~--~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Llp~Ll~~L~~~~----------~~V 992 (1265)
.+..|..-+++|-.. . ...=+.+.+.-+..+.+.+ ...+.||...++.....+|+..+ ..+
T Consensus 56 ~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~L-Kslf~~Y~~~ll~~~~~~L~~~~~~~~~~~~~~~~L 134 (153)
T PF08146_consen 56 TFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKL-KSLFTPYFSYLLDNAVDLLKQFNSSKTESKSKSWEL 134 (153)
T ss_pred hhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 344555555666532 1 1222334445555555555 23578899999998888887654 344
Q ss_pred HHHHHHHHHHHHh
Q 000827 993 QENCIDLVGRIAD 1005 (1265)
Q Consensus 993 re~ai~~ig~Ia~ 1005 (1265)
+..++.++.....
T Consensus 135 ~~~vL~~L~~~F~ 147 (153)
T PF08146_consen 135 WRLVLSTLQKCFL 147 (153)
T ss_pred HHHHHHHHHHHHh
Confidence 4555555544433
No 338
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=28.82 E-value=5.3e+02 Score=24.74 Aligned_cols=73 Identities=18% Similarity=0.103 Sum_probs=47.0
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHH-----HHHHHHHHHHh-hC-CCCHHHHHHHHHHHHH
Q 000827 888 PYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQL-----MGHLGVVLYEY-LG-EEYPEVLGSILGALKA 960 (1265)
Q Consensus 888 p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~l-----l~~L~~~L~~~-L~-d~~~~V~~~al~aL~~ 960 (1265)
.....++..|...|++++|.|..-|..+|-.++...+..|+..+ +..++...+.. .+ +....|+..+...+..
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 34567888889999999999999999999988887666554332 22222211111 11 3355677776665544
No 339
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=28.26 E-value=3.4e+02 Score=26.04 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=32.8
Q ss_pred cHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCC
Q 000827 973 PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAE 1009 (1265)
Q Consensus 973 ~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~ 1009 (1265)
....++..|...|++.++.++..|+.++-.+.+++++
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~ 70 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGE 70 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH
Confidence 4678888999999999999999999999999999654
No 340
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=27.07 E-value=3.4e+02 Score=26.37 Aligned_cols=84 Identities=14% Similarity=0.166 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHHHhhCCC---CcChHHHHHHHHHHHHHHhhc-----hHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Q 000827 989 HEKVQENCIDLVGRIADRGAE---FVPAREWMRICFELLEMLKAH-----KKGIRRATVNTFGYIAKAIGPQDVLATLLN 1060 (1265)
Q Consensus 989 ~~~Vre~ai~~ig~Ia~~~~~---~~~~~e~~~il~~LL~~Lk~~-----~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~ 1060 (1265)
+....+.++.....|...... .+... ...++..|+ .|.+. -...|..|..++... -|..+.|.|.+
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~-a~eL~~~Ll-~L~~~f~~~~Fe~~R~~alval~v~----~P~~~~~~L~~ 91 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEY-AEELLKALL-HLQNKFDIENFEELRQNALVALVVA----APEKVAPYLTE 91 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHH-HHHHHHHHH-H---TT--TTTTHHHHHHHHHHHHH----SGGGHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHh-hccccCCccCHHHHHHHHHHHHHHH----hhHHHHHHHHH
Confidence 355668888888888877444 22222 234444444 22221 235666666555442 35566666666
Q ss_pred hhcccch--hhHHHHHHHHH
Q 000827 1061 NLKVQER--QNRVCTTVAIA 1078 (1265)
Q Consensus 1061 ~L~~~e~--~~R~~~~~ai~ 1078 (1265)
.+-..+. +.|...+.+++
T Consensus 92 ~f~~~~~Sl~qR~~iL~~l~ 111 (114)
T PF10193_consen 92 EFFSGDYSLQQRMSILSALS 111 (114)
T ss_dssp HHTTS---THHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHH
Confidence 5544333 34555555444
No 341
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=26.88 E-value=1.1e+03 Score=27.72 Aligned_cols=190 Identities=10% Similarity=0.127 Sum_probs=95.0
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-CCCCc-ChH-----HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 000827 975 KDLLPRLTPILKNRHEKVQENCIDLVGRIADR-GAEFV-PAR-----EWMRICFELLEMLKAHKKGIRRATVNTFGYIAK 1047 (1265)
Q Consensus 975 ~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~-~~~~~-~~~-----e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~ 1047 (1265)
.+++..|+..|..-....|..+...++.+... .+... |.. .+..++..|+.....++ . +-..|.|.+
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~d-----i-al~~g~mlR 148 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPD-----I-ALNCGDMLR 148 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTT-----T-HHHHHHHHH
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcc-----c-cchHHHHHH
Confidence 56777788878777788899999999888876 22211 111 11233333333322221 1 112222222
Q ss_pred hhC-cHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhh
Q 000827 1048 AIG-PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDY 1126 (1265)
Q Consensus 1048 ~iG-p~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~y 1126 (1265)
.|- -+.+...++. ++ .+-.+++-...+...+-..++.++..++..-......|
T Consensus 149 ec~k~e~l~~~iL~---~~-----------------------~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~f 202 (335)
T PF08569_consen 149 ECIKHESLAKIILY---SE-----------------------CFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEF 202 (335)
T ss_dssp HHTTSHHHHHHHHT---SG-----------------------GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHhhHHHHHHHhC---cH-----------------------HHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHH
Confidence 221 1222222221 00 11122333344555565556666665554333333333
Q ss_pred H----HhHHHHHHHHhccCChhHHHHHHHHHHHHHhcccCCCchhHHH------HHHHhhhhhcccCChHHHHHHHHHHH
Q 000827 1127 I----YAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALV------HLLNYVWPNIFETSPHVINAVMEAIE 1196 (1265)
Q Consensus 1127 i----~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~g~~~e~~~~------~~ln~l~~~i~~~s~~v~~~~~~a~~ 1196 (1265)
+ ..+......++...+-+.|+.+..+++.+-+..... .++. ..|+.++.-+-+.|+.++--+++.+.
T Consensus 203 l~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~---~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFK 279 (335)
T PF08569_consen 203 LSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNF---NVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFK 279 (335)
T ss_dssp HHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGH---HHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHH---HHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHH
Confidence 3 345556777777888889999999998887655421 1122 23445555556678887776666665
Q ss_pred HHH
Q 000827 1197 GMR 1199 (1265)
Q Consensus 1197 ~~~ 1199 (1265)
-++
T Consensus 280 vFV 282 (335)
T PF08569_consen 280 VFV 282 (335)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 342
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.50 E-value=5.7e+02 Score=31.39 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=46.5
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHHHhcccCCCchhHHH------HHHHhhhhhc-cc-CChHHHHHHHHHHHHHHH
Q 000827 1129 AVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALV------HLLNYVWPNI-FE-TSPHVINAVMEAIEGMRV 1200 (1265)
Q Consensus 1129 ~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~g~~~e~~~~------~~ln~l~~~i-~~-~s~~v~~~~~~a~~~~~~ 1200 (1265)
.+.-+|.+-+.++...+...|.+++.-++.+|+ +.|. +||+-++-.+ .. ...+||..++..|+.+..
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG-----~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~ 112 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCG-----YSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQ 112 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHH
Confidence 444456666777777777777777776777665 3332 3444332221 12 567899999999999999
Q ss_pred HhCH
Q 000827 1201 ALGA 1204 (1265)
Q Consensus 1201 ~~g~ 1204 (1265)
+++.
T Consensus 113 af~~ 116 (470)
T KOG1087|consen 113 AFCG 116 (470)
T ss_pred HccC
Confidence 8864
No 343
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=26.29 E-value=2.1e+02 Score=26.28 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 000827 604 LLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLA 670 (1265)
Q Consensus 604 Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~ 670 (1265)
|-||..-+..+ .+.+.|+..+.|+.+|...-|..+..=-+.++.++.....|.+..+-..|..++.
T Consensus 19 L~Pf~~i~~~~-~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 19 LKPFEYIMSNN-PSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHhcc-CcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 33444333333 3468999999999999988876666666778888888888877777777666553
No 344
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=26.06 E-value=7e+02 Score=25.22 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhchhhhchHH--HHHHH-HHHHhcC---CCHHHHHHHHHHHHHHHHHHhh
Q 000827 870 VMLNGFGAVVNSLGQRVKPYLP--QICGT-IKWRLNN---KSAKVRQQAADLISRIAVVMKQ 925 (1265)
Q Consensus 870 ~al~aL~~I~~~lg~~~~p~Lp--~ilp~-Ll~~L~d---~~~~VR~~A~~~lg~La~~l~~ 925 (1265)
.++..|.++++.||.+|...+. .++.. |..++++ .+..|+.....+|...+..++.
T Consensus 58 ~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (141)
T cd03565 58 LTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRG 119 (141)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 4788889999999988754332 24443 4566653 4679999999998888877654
No 345
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=25.83 E-value=8.2e+02 Score=30.87 Aligned_cols=136 Identities=17% Similarity=0.123 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhhC------hhh
Q 000827 530 YVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALG------IPA 603 (1265)
Q Consensus 530 ~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg------~~~ 603 (1265)
.+.-++.+.......-|..-.....++++++-.. ++.......+++.....-.+..++...+ +.+
T Consensus 409 ~LsalL~~c~~~~~~~d~~~~~~i~~ii~~lw~~---------~~~~~v~~~~~l~~~~~~lL~l~~~~~~~l~~~~i~q 479 (559)
T PF14868_consen 409 ALSALLQVCNSSGSTIDMKDQTFIVEIISQLWSF---------LSSKQVSSQPYLQQTLSLLLSLLSFFIQLLDPQLIEQ 479 (559)
T ss_pred HHHHHHHHhcccccccCHHHHHHHHHHHHHHHHH---------hchhhhccchHHHHHHHHHHHHHHHHHHhcChHHHHH
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHH
Q 000827 604 LLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGC--AVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAE 674 (1265)
Q Consensus 604 Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~--~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae 674 (1265)
++-.+...+.+..+...|-+...-++.+....-. .=.+-++.+..++-..|.|.++-|+..|+.|.+++|+
T Consensus 480 v~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe 552 (559)
T PF14868_consen 480 VLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAE 552 (559)
T ss_pred HHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc
No 346
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=25.17 E-value=1.8e+03 Score=29.63 Aligned_cols=91 Identities=16% Similarity=0.361 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHH-Hh-hchHHHHHHHHHHHHHHHHh---hCcHHHHHHHH-Hhh----cccchhhHHHHHHHHHHHHhhc
Q 000827 1015 EWMRICFELLEM-LK-AHKKGIRRATVNTFGYIAKA---IGPQDVLATLL-NNL----KVQERQNRVCTTVAIAIVAETC 1084 (1265)
Q Consensus 1015 e~~~il~~LL~~-Lk-~~~~~iR~~a~~tlg~Ia~~---iGp~~vlp~Ll-~~L----~~~e~~~R~~~~~ai~~l~e~~ 1084 (1265)
.|.+.+..|+.. .+ ....++|..+...|..+... +-.++++.... ..+ -..+-++|...+.++.-++++|
T Consensus 425 gwiq~l~~lm~r~~r~~s~~~Vrik~~~~l~~~~l~nr~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C 504 (1697)
T KOG3687|consen 425 GWIQNLQALMERFFRSESRGAVRIKVLDVLSFVLLINRQFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGC 504 (1697)
T ss_pred hHHHHHHHHHHHHHHhcccceEEEeeHHHHHHHHhhhhhhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhc
Confidence 588888887743 33 23556777777777666432 22234443221 111 1234578889999999999999
Q ss_pred CCc------ccHHHHHhhcCCCchhHH
Q 000827 1085 SPF------TVLPALMNEYRVPELNVQ 1105 (1265)
Q Consensus 1085 gp~------~vlPaL~~~~~~~~~~vq 1105 (1265)
..+ .++-++|++-..++....
T Consensus 505 ~t~~~~~lldi~EA~~~rs~s~~~~l~ 531 (1697)
T KOG3687|consen 505 HTHHFNSLLDIIEAVMARSLSPPPELE 531 (1697)
T ss_pred chhcchhHHHHHHHHHhcccCCCcchh
Confidence 763 567788888555544333
No 347
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=24.41 E-value=1.7e+03 Score=29.05 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=38.0
Q ss_pred HHHHHHHhchhh------hchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCC
Q 000827 875 FGAVVNSLGQRV------KPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGE 945 (1265)
Q Consensus 875 L~~I~~~lg~~~------~p~Lp~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d 945 (1265)
|+++..+....| ...+..-+++|+.++...+..+--+|.-+|-++...- .-+-......||+.|-|
T Consensus 474 lSAlLTGvNRAfPfaq~~ddk~~~~~~tLFkl~HssNFNTsVQaLmLlfQvs~~~-----~~vSDRyY~aLY~kLLd 545 (988)
T KOG2038|consen 474 LSALLTGVNRAFPFAQTADDKLEEQMKTLFKLTHSSNFNTSVQALMLLFQVSKKN-----DYVSDRYYRALYRKLLD 545 (988)
T ss_pred HHHHHhcccccCCcccCchHHHHHHhHHHHHHHhhcccchhHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHhcC
Confidence 455555544333 1234446688889888888888777777777665421 11233444555555544
No 348
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=23.97 E-value=4.5e+02 Score=27.55 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=39.2
Q ss_pred hHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcc----hhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHH-hC
Q 000827 603 ALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVL----PHLRSLVEIIEHGLNDENQKVRTITALSLAALAEA-AA 677 (1265)
Q Consensus 603 ~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~----p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~-~~ 677 (1265)
++=|.|..+++.+. .++..++.|+++....-..+. .--..+..+|...... ++ +| |+.-...|... .+
T Consensus 3 eikplLIsCL~~q~---~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~-e~-~k--A~~IF~~L~~~l~~ 75 (174)
T PF04510_consen 3 EIKPLLISCLTMQE---TKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSEN-EP-VK--AFHIFICLPMPLYG 75 (174)
T ss_pred chHHHHHHHHHhhc---ccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhcc-ch-HH--HHHHHHhCCchhhh
Confidence 44566666665543 345566677666554433221 1123455555553321 22 22 22222233211 11
Q ss_pred ccchhhhHHhHHHHHHhhhcc
Q 000827 678 PYGIESFDSVLKPLWKGIRSH 698 (1265)
Q Consensus 678 p~~~~~~~~iL~~L~~~l~~~ 698 (1265)
....+.++.+++.+.+.+.++
T Consensus 76 efl~~~~~~L~~~~~~~L~~p 96 (174)
T PF04510_consen 76 EFLIPFMENLLPEISKVLLPP 96 (174)
T ss_pred hHHHHHHHHHHHHHHHHcCCc
Confidence 112334455566666666555
No 349
>COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=23.92 E-value=5.2e+02 Score=34.45 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=38.6
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCC
Q 000827 495 ILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDED 546 (1265)
Q Consensus 495 iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded 546 (1265)
++|+.... +-..||-.+.++++-.--+|..+|+|...++.-+.|.+.+|.
T Consensus 110 l~pf~~~~--si~v~s~~i~li~~yiv~Lg~~vr~~~~~i~isLLpg~e~es 159 (1618)
T COG5221 110 LFPFSAHC--SILVVSSFIDLIERYIVPLGKDVRSYCTSILISLLPGMEFES 159 (1618)
T ss_pred hhhhhhhh--hhHhHHHHHHHHHhheeecCccHHHHHHHHHHHhCCCccccc
Confidence 45554433 345688888899887777888899999999999999888763
No 350
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=23.44 E-value=1.7e+03 Score=30.16 Aligned_cols=84 Identities=18% Similarity=0.073 Sum_probs=46.6
Q ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCC--------------HHHHHHHHHHH
Q 000827 895 GTIKWRLNNK--SAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEY--------------PEVLGSILGAL 958 (1265)
Q Consensus 895 p~Ll~~L~d~--~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~--------------~~V~~~al~aL 958 (1265)
..|+..|.|. .++||.+||.+|++.+.-+..-. =.++|++++.+.....+ .-|+..+-.|+
T Consensus 677 ~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwt---G~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~a~ 753 (1180)
T KOG1932|consen 677 SALTRTLEDERYFYRIRIAAAFALAKTANGESDWT---GPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAIPVAF 753 (1180)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHhhccccccc---ChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhhHHHH
Confidence 5566777776 68999999999999885431100 13444544444332211 01444444555
Q ss_pred HHHHHHhCcccCCccHHhHHHHHHHHhc
Q 000827 959 KAIVNVIGMTKMTPPIKDLLPRLTPILK 986 (1265)
Q Consensus 959 ~~lv~~~g~~~l~p~l~~Llp~Ll~~L~ 986 (1265)
..+-..-|. . -+.+.+.|+++|+
T Consensus 754 a~lR~~~g~---c--p~~V~~FlLdLlk 776 (1180)
T KOG1932|consen 754 ASLRGREGK---C--PKEVKAFLLDLLK 776 (1180)
T ss_pred HHhccccCC---C--hHHHHHHHHHHhh
Confidence 554433222 1 2566777777776
No 351
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=23.20 E-value=1.3e+03 Score=27.46 Aligned_cols=310 Identities=11% Similarity=0.156 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhh
Q 000827 617 SWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIR 696 (1265)
Q Consensus 617 s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~ 696 (1265)
+.+.++-|.+.|...-.... ..-..-+..=..++.|.+..||..|+.-|-.++.. +......++|..|+....
T Consensus 37 ~~k~k~lasq~ip~~fk~fp----~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~l~qLLnk~s 109 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFP----SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDVLVQLLNKAS 109 (460)
T ss_pred chHHHHHHHHHHHHHHhhCc----hhhhHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHHHHHHHHHHH
Q ss_pred ccchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHH
Q 000827 697 SHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFR 776 (1265)
Q Consensus 697 ~~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~~~de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~ 776 (1265)
+..|.....-.|+.+|..++..+..=+-+.+ ++++..++...+.+
T Consensus 110 ---------------------------------l~~Lf~~~~~~D~~irek~l~fi~tKl~~l~--~e~L~kevE~~iv~ 154 (460)
T KOG2213|consen 110 ---------------------------------LTGLFGQIEVGDEQIREKVLKFIRTKLITLK--GEVLTKEVERHIVD 154 (460)
T ss_pred ---------------------------------HHHHHhhhhhhhHHHHHHHHHHHHHHhhccc--HHHhhhHHHHHHHH
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHH
Q 000827 777 NFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGI 856 (1265)
Q Consensus 777 ~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i~~~l~d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~l 856 (1265)
-+...-..-+.+.....++. +..+...-.-..+.--+..++-.........-...|..+..+++
T Consensus 155 eikkal~dVtgeef~lfm~~-------------L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfi--- 218 (460)
T KOG2213|consen 155 EIKKALEDVTGEEFTLFMDI-------------LASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFI--- 218 (460)
T ss_pred HHHHHHHhccHHHHHHHHHH-------------HHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHH---
Q ss_pred HHHhhhcccchHHHHHHHHHHHHHHhc-hhhhchHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 000827 857 LYAFQEQTSDDANVMLNGFGAVVNSLG-QRVKPYLPQ-ICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGH 934 (1265)
Q Consensus 857 l~~l~e~~~ed~~~al~aL~~I~~~lg-~~~~p~Lp~-ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~ 934 (1265)
....+|+-.++.+.. .+|-.|+.. ++|. ...-.....+-.-..++..++..-.-....++++.
T Consensus 219 ------------sCl~~AvPfFargapSskf~~y~n~~~ip~---~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~Lps 283 (460)
T KOG2213|consen 219 ------------SCLLMAVPFFARGAPSSKFVEYLNKHIIPH---HFDKLTEERKLDLLKALAEMSSYTTAQAARQMLPS 283 (460)
T ss_pred ------------HHHHHhhhhhhcCCchhHHHHHHHhhhccc---ccccchHHHHHHHHHHHHHhCccchHHHHHHHHHH
Q ss_pred HHHHHHHhhC--CCCHHHHHHHHHHHHHHHHHhC--------------------cccCCccHHhHHHHHHHHhcCCCHHH
Q 000827 935 LGVVLYEYLG--EEYPEVLGSILGALKAIVNVIG--------------------MTKMTPPIKDLLPRLTPILKNRHEKV 992 (1265)
Q Consensus 935 L~~~L~~~L~--d~~~~V~~~al~aL~~lv~~~g--------------------~~~l~p~l~~Llp~Ll~~L~~~~~~V 992 (1265)
++..|.++.- +..++..-+-..|+..+...+| .+.+..+.+..+....+.|+.....+
T Consensus 284 i~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg~k~pn~t~ak~d~K~L~~~~ad~l~r~fq~y~K~t~E~L~t~edqi 363 (460)
T KOG2213|consen 284 IVELLKEYMPAPKTGEEMQFSYVECLLYALHHLGHKKPNFTNAKCDAKKLKDFRADYLARGFQEYIKKTGEALKTEEDQI 363 (460)
T ss_pred HHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHhhcCcchhhhhcchhhhccchHHHHhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 000827 993 QENCIDL 999 (1265)
Q Consensus 993 re~ai~~ 999 (1265)
+..+.+.
T Consensus 364 Kat~~kl 370 (460)
T KOG2213|consen 364 KATALKL 370 (460)
T ss_pred HHhhhhh
No 352
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=23.16 E-value=1.2e+03 Score=27.07 Aligned_cols=32 Identities=9% Similarity=0.049 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhC
Q 000827 1018 RICFELLEMLKAHKKGIRRATVNTFGYIAKAIG 1050 (1265)
Q Consensus 1018 ~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iG 1050 (1265)
++|..|.+.+.... ..|...+..+-.+|..++
T Consensus 107 ~vLsnLfn~~d~~~-~aR~~Vy~~lv~la~~~~ 138 (378)
T KOG2753|consen 107 QVLSNLFNGVDKPT-PARYQVYMSLVTLAASCK 138 (378)
T ss_pred HHHHHHHhccCCCc-hHHHHHHHHHHHHHhhcc
Confidence 45555554433332 266666666555555443
No 353
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=22.60 E-value=3.6e+02 Score=27.28 Aligned_cols=63 Identities=19% Similarity=0.297 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhc
Q 000827 1019 ICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETC 1084 (1265)
Q Consensus 1019 il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~L~~~e~~~R~~~~~ai~~l~e~~ 1084 (1265)
-+..+|..|..+..++.++|.-++-. ..+ .+++.+.+++.|+..+.+.|.+..+.|-.+.+.+
T Consensus 9 ~F~~~L~~L~aS~qSi~kaa~fAlk~--~~~-~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~ 71 (139)
T PF12243_consen 9 QFTQLLRRLNASQQSIQKAAQFALKN--RDM-EEDLWSCILEQLEKENLNTRINIFYFIDSLCESS 71 (139)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHHc--ccc-HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 34466667777777777777666655 111 2468888888888887777888777766665543
No 354
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=22.54 E-value=1.6e+03 Score=28.27 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=44.4
Q ss_pred HHHHHHHHHhchhhhhh--HHhHHHHHHHHhccCChhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhh
Q 000827 1110 KSLSFLFEYIGEMGKDY--IYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWP 1178 (1265)
Q Consensus 1110 ~al~~l~~~ig~~~~~y--i~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~ 1178 (1265)
..|...++.+.-...+- ...++.+|-......|+.+++.|+.+++.++.... .....+.-+.++++.
T Consensus 450 ~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p--~~~~vi~~Fa~Fif~ 518 (552)
T PF14222_consen 450 DLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP--NRQQVITGFARFIFR 518 (552)
T ss_pred HHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHee
Confidence 44555555543221111 25677787777788899999999999999998764 344555566666655
No 355
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.52 E-value=8.9e+02 Score=29.80 Aligned_cols=75 Identities=16% Similarity=0.099 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchH-----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHh
Q 000827 891 PQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEE-----QLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI 965 (1265)
Q Consensus 891 p~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~-----~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~ 965 (1265)
+..+..|.+.+++++++|..-|..+|--+++.++..||. .+|+.++... .+ ...+..|+..++..|..=.+.+
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~-k~-~~~~~~Vr~kiL~LI~~W~~af 114 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRP-KN-KPRDLKVREKILELIDTWQQAF 114 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc-cc-CCcchhHHHHHHHHHHHHHHHc
Confidence 378888899999999999988888888777777766653 3444422221 11 1256689999999999999988
Q ss_pred Cc
Q 000827 966 GM 967 (1265)
Q Consensus 966 g~ 967 (1265)
+.
T Consensus 115 ~~ 116 (470)
T KOG1087|consen 115 CG 116 (470)
T ss_pred cC
Confidence 76
No 356
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=22.09 E-value=1.5e+03 Score=27.75 Aligned_cols=146 Identities=18% Similarity=0.259 Sum_probs=82.5
Q ss_pred ccHHhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhC
Q 000827 972 PPIKDLLPRLTPILKNR-HEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIG 1050 (1265)
Q Consensus 972 p~l~~Llp~Ll~~L~~~-~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iG 1050 (1265)
..+..++..++.+.+.. +...-++|+..|..|...|. +|..-+..++..|-.... ..++...+-+++..|+++--
T Consensus 172 ~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~--iP~~sl~~~i~vLCsi~~--~~~l~~~~w~~m~nL~~S~~ 247 (464)
T PF11864_consen 172 DEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGD--IPSESLSPCIEVLCSIVN--SVSLCKPSWRTMRNLLKSHL 247 (464)
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCc--CChHHHHHHHHHHhhHhc--ccccchhHHHHHHHHHcCcc
Confidence 44566777777775443 34555889999998887642 343322233322222111 22566667778888876544
Q ss_pred cHHHHHHHHHhhcccchh------hHHHHHHHHHHHHhhcC----------CcccHHHHHhhcCCCchhHHHHHHHHHHH
Q 000827 1051 PQDVLATLLNNLKVQERQ------NRVCTTVAIAIVAETCS----------PFTVLPALMNEYRVPELNVQNGVLKSLSF 1114 (1265)
Q Consensus 1051 p~~vlp~Ll~~L~~~e~~------~R~~~~~ai~~l~e~~g----------p~~vlPaL~~~~~~~~~~vq~~vl~al~~ 1114 (1265)
.+..+-.|...|+.++.+ +-.|+...+..+.-..| +..++|.|.+.++.....|-..|+.++..
T Consensus 248 g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ 327 (464)
T PF11864_consen 248 GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINR 327 (464)
T ss_pred HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHH
Confidence 455666777777433221 11233333333222221 12488888888876666666788888888
Q ss_pred HH-HHhch
Q 000827 1115 LF-EYIGE 1121 (1265)
Q Consensus 1115 l~-~~ig~ 1121 (1265)
++ ..++.
T Consensus 328 ll~~~~~~ 335 (464)
T PF11864_consen 328 LLDGKYGR 335 (464)
T ss_pred HHhHhhhh
Confidence 88 44443
No 357
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=22.01 E-value=6.2e+02 Score=26.18 Aligned_cols=39 Identities=26% Similarity=0.159 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHhhc
Q 000827 888 PYLPQICGTIKWRL-NNKSAKVRQQAADLISRIAVVMKQC 926 (1265)
Q Consensus 888 p~Lp~ilp~Ll~~L-~d~~~~VR~~A~~~lg~La~~l~~~ 926 (1265)
.++..+-..+...| .|..|.|.-+++.+++-+++-.+..
T Consensus 72 ~nI~~IK~~iie~L~~D~rPSVKLA~iSLlSiIiek~~~k 111 (180)
T PHA02855 72 ENINDIKSQIIESLNNDNRPSVKLAIISLISMIAEKKGYK 111 (180)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccc
Confidence 34555556666666 8999999999999999999876653
No 358
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=20.76 E-value=1.3e+03 Score=28.71 Aligned_cols=78 Identities=10% Similarity=0.238 Sum_probs=47.8
Q ss_pred CCcccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhH-HhHHHHHHHHhccCChhHHHHHHHHHHHHHhcccC
Q 000827 1085 SPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAG 1162 (1265)
Q Consensus 1085 gp~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi-~~i~PlL~~~l~d~d~~~Rq~A~~~l~~lal~~~g 1162 (1265)
..+.|.-.|++.+..|+.-+..-..-+++...--+......++ ..++..|+..++..|...|....++++|+.-||-.
T Consensus 428 ~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~ 506 (743)
T COG5369 428 LDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQK 506 (743)
T ss_pred cccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcc
Confidence 3456666777777777755543222222222111122233344 46777788888877888888889999999988863
No 359
>PHA02836 putative transmembrane protein; Provisional
Probab=20.45 E-value=1.3e+02 Score=29.47 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhch-hhhchHHHHHHHHHHHhcCC
Q 000827 869 NVMLNGFGAVVNSLGQ-RVKPYLPQICGTIKWRLNNK 904 (1265)
Q Consensus 869 ~~al~aL~~I~~~lg~-~~~p~Lp~ilp~Ll~~L~d~ 904 (1265)
-..+.-||.+++.+|. ....|++.++|.++..|+|.
T Consensus 105 LtLiG~~gyise~wGk~k~~kYI~~im~l~fnfl~dn 141 (153)
T PHA02836 105 LTLIGIIGYISECCGKYGLEKYIQDLLLLLFNFLDDN 141 (153)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHcccc
Confidence 4677889999999995 67889999999999999874
No 360
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=20.37 E-value=1.6e+02 Score=20.70 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhCcHHHHHHHHHhhcc
Q 000827 1033 GIRRATVNTFGYIAKAIGPQDVLATLLNNLKV 1064 (1265)
Q Consensus 1033 ~iR~~a~~tlg~Ia~~iGp~~vlp~Ll~~L~~ 1064 (1265)
.+|..++.+||.+ |....++.|++.+++
T Consensus 2 ~vR~~aa~aLg~~----~~~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQL----GDEEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHc----CCHhHHHHHHHHhcC
Confidence 4788999999976 556677777776643
No 361
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=20.35 E-value=2.1e+03 Score=28.73 Aligned_cols=148 Identities=18% Similarity=0.173 Sum_probs=87.7
Q ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHHhcCCCCCHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Q 000827 456 KIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKIL 535 (1265)
Q Consensus 456 ~i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll 535 (1265)
++.+.+....+.++..++.|-+.|.+.-+..| ++-.++.+..+...+-+.|..++-.+.+ .+..|-.+
T Consensus 5 ~vv~~~~~aqs~~p~s~k~AE~~Lrqwe~q~g---F~~kL~~I~~~~~~~m~lR~~a~i~fkn-------~I~~~W~~-- 72 (947)
T COG5657 5 PVVKQLDLAQSPDPPSVKCAEERLRQWEKQHG---FALKLLSINLSAFNSMSLRWAALIQFKN-------YIDKHWRE-- 72 (947)
T ss_pred HHHHHHHhhcCCCCchHhhHHHHHHhhhcccc---HHHHHHHHHhccccchhHHHHHHHHHHh-------hHHHHhhh--
Confidence 45666777789999999999888877644433 4555566555555666777765443332 12122110
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCCCchHHHHHHHHHHHHHHHhhh-C--hhhHHHHHHHHH
Q 000827 536 VVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASAL-G--IPALLPFLKAVC 612 (1265)
Q Consensus 536 ~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~~~d~~vR~~aa~~l~~lA~~l-g--~~~Llp~L~~~l 612 (1265)
......+.|+...+|.+....+ ...+...--..|.|++.+|... + ||+|+|-|...+
T Consensus 73 ~~~~~i~p~e~v~IR~~l~~li--------------------i~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~L 132 (947)
T COG5657 73 ENGNSILPDENVLIRDELFSLI--------------------ISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLL 132 (947)
T ss_pred hcccCCCCccchHHHHHHHHHH--------------------HcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhh
Confidence 1122234456556666532211 1112222224578888888873 3 999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhC
Q 000827 613 QSKKSWQARHTGIKIVQQIAILIG 636 (1265)
Q Consensus 613 ~s~~s~~~R~aal~~L~~i~~~~g 636 (1265)
++++ +..-+..+.++-+|...++
T Consensus 133 s~~D-~~tn~~~L~~~h~Ifk~~r 155 (947)
T COG5657 133 SEKD-MVTNENSLRVLHHIFKRLR 155 (947)
T ss_pred cccc-hHHHHHHHHHHHHHHHHHh
Confidence 8865 5555556666666655554
No 362
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=20.21 E-value=2.2e+02 Score=34.94 Aligned_cols=113 Identities=12% Similarity=0.022 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCc-cc
Q 000827 892 QICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLM-GHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM-TK 969 (1265)
Q Consensus 892 ~ilp~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll-~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~-~~ 969 (1265)
.|...|+.+|.||.-.|...+...+..+.--+.+- .+.++ ..++.++...+...+...+.+..|.+..++-.+.. ..
T Consensus 431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL-~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNL-GAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred chHHHHHHHhcCccceeeccchhhhhheeeeccch-HHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 46677789999977666655443333322111111 12222 33444554444445567888889999988765533 24
Q ss_pred CCccHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000827 970 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD 1005 (1265)
Q Consensus 970 l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~ 1005 (1265)
|++--+-=+..++...+++.++|++.+...+-.+..
T Consensus 510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 554444457788888899999999999999987754
No 363
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=20.09 E-value=1.3e+02 Score=26.89 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHhhcC-CCChhhHHHHHHHHHHHHHH
Q 000827 620 ARHTGIKIVQQIAILI-GCAVLPHLRSLVEIIEHGLN-DENQKVRTITALSLAALAEA 675 (1265)
Q Consensus 620 ~R~aal~~L~~i~~~~-g~~l~p~L~~ll~~l~~~L~-De~~~VR~~A~~aL~~lae~ 675 (1265)
..++++.+++.|+... |..+.+. ..+++.|.+... .+...||-.|..+|+.++..
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~-~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDE-SDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhh-cCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 3577889999887652 3222221 147777777655 57899999999999998754
Done!