Query 000827
Match_columns 1265
No_of_seqs 496 out of 2191
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 17:21:14 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000827.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_596-599//hhsearch_pdb/000827hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 354.5 69.9 730 448-1248 6-797 (852)
2 2bpt_A Importin beta-1 subunit 1.0 1 1 343.4 67.8 728 455-1246 4-823 (861)
3 1b3u_A Protein (protein phosph 1.0 1 1 329.0 50.6 564 455-1156 10-585 (588)
4 1u6g_C TIP120 protein, CAND1; 1.0 1 1 323.8 65.2 60 1186-1246 1080-1143(1230)
5 1u6g_C TIP120 protein, CAND1; 1.0 1 1 321.0 64.2 658 469-1161 347-1135(1230)
6 2bpt_A Importin beta-1 subunit 1.0 1 1 317.4 69.1 675 453-1202 93-859 (861)
7 1qgr_A Protein (importin beta 1.0 1 1 312.3 65.8 728 457-1244 3-837 (876)
8 1qgr_A Protein (importin beta 1.0 1 1 309.0 58.8 550 604-1200 218-871 (876)
9 4fdd_A Transportin-1; heat rep 1.0 1 1 298.7 69.6 553 463-1048 182-785 (852)
10 1b3u_A Protein (protein phosph 1.0 1 1 283.4 49.3 556 573-1198 15-585 (588)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=354.51 Aligned_cols=730 Identities=14% Similarity=0.127 Sum_probs=511.3
Q ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHCC-CCCCHHHHHHHHHHHHHHHHHCCH
Q ss_conf 96579999999998742589975799999999998853198324988867-8339-997889999999999999832121
Q 000827 448 SPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILP-LLMQ-PTLEDQERHLLVKVIDRVLYKLDE 525 (1265)
Q Consensus 448 ~~~~~~~~~i~~lll~lkng~~~vR~~A~r~L~~~A~~~G~~~~~~~lLp-~l~~-~~l~d~~R~~~v~ii~~i~~~l~~ 525 (1265)
..++..-..+..++...-+++..+|+.|-..|.+... .|-|..++- ++.+ ...+...|+.+...+.+...+.-.
T Consensus 6 ~~~~~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~----~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~ 81 (852)
T 4fdd_A 6 KPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ----YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ 81 (852)
T ss_dssp CCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT----SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG
T ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 9984239999999998739498999999999999870----998899999998566889867999999999998987447
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH---CHH
Q ss_conf 13566898999997320498878899999999999997445999972236888752999999989799999621---934
Q 000827 526 LVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASAL---GIP 602 (1265)
Q Consensus 526 ~v~p~~~~Ll~~i~~lL~ded~~vR~~a~~il~~L~k~~Gl~~~i~~L~~~l~~~d~~vR~~aa~~l~~lA~~l---g~~ 602 (1265)
. .+ ...+ ..+...+...+.+++..+|+.++.+++.+++.. .||
T Consensus 82 ---------------~-~~--~~~~----------------~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp 127 (852)
T 4fdd_A 82 ---------------N-FP--NGVT----------------DFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWP 127 (852)
T ss_dssp ---------------G-CC--HHHH----------------HHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCT
T ss_pred ---------------C-CC--HHHH----------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf ---------------7-99--9999----------------999999999874998999999999999999864813568
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 2799999987078426879899999999999907776-----20079899999840389873439999999999999947
Q 000827 603 ALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAV-----LPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAA 677 (1265)
Q Consensus 603 ~Llp~L~~~~~s~~s~~~R~aai~~l~~i~~~~g~~i-----~p~L~~ll~~i~~~l~De~~~VR~~A~~al~~La~~~~ 677 (1265)
++++.|.+.+.+++ +..|++++.+++.+|...+..+ ..++..+++.+.+++.|+++.||..|+.+++.++....
T Consensus 128 ~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 128 DLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp THHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999870999-89999999999999998578756343133299999999998567978999999999999986463
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 55602158869999973203553899999999966511116865443389999999997179999999999999999630
Q 000827 678 PYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVS 757 (1265)
Q Consensus 678 p~~~~~~~~iL~~L~~~l~~~~~kala~~l~a~~~liP~l~~~~~~~~~~~ii~~L~~~l~~~de~~r~~al~~l~~~~~ 757 (1265)
......++.+++.+++.+.+....+....+++++.+..... .+...|+..+++.+...+++.+++++..+++.+..+++
T Consensus 207 ~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~ 285 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM-DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAE 285 (852)
T ss_dssp HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf 87998899999999987179977899999999999998577-98998899999999987069968999999999999860
Q ss_pred CCCCCCHHHH---HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC----CCHHHHHHHHH
Q ss_conf 1577603453---2015999999999753343888999999999999840804469999987148----99558999999
Q 000827 758 TEGVEADYIR---SDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKD----ESEPYRRMVME 830 (1265)
Q Consensus 758 ~~g~~~~~i~---~~ilp~l~~~~~~~~~~~d~~~~~~li~~~~~ia~~~g~~~ii~~i~~~l~d----~~~~~R~~a~~ 830 (1265)
.... ..++. ..++|.++..+.. .+.+ . ... . ...+ ..-.+ ..+.+|+.++.
T Consensus 286 ~~~~-~~~~~~~~~~l~p~ll~~l~~--~e~d---~-~~~-------~-~d~~-------ed~~~dd~~~~~~vr~~a~~ 343 (852)
T 4fdd_A 286 QPIC-KDVLVRHLPKLIPVLVNGMKY--SDID---I-ILL-------K-GDVE-------GGSGGDDTISDWNLRKCSAA 343 (852)
T ss_dssp STTH-HHHHTTTHHHHHHHHHHHTSC--CHHH---H-HHH-------H-C-------------------CCCCHHHHHHH
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHCCC--CHHH---H-HHH-------C-CCCC-------CCCCCCCCCCCCHHHHHHHH
T ss_conf 3657-988788898899999987578--6767---9-986-------6-9844-------32224564011169999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 99999996187871167899989999998400466227989998999999830301301777899999971399999999
Q 000827 831 TIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQ 910 (1265)
Q Consensus 831 ~l~~ii~~lg~~~~~~~~~~~li~~ll~~l~e~~~ed~~~al~aLg~I~~~lg~~~~p~Lpqiip~Ll~~L~d~~~~VR~ 910 (1265)
++..++...+.. ....+++.+...+.+.....+..++.++|.++++++..+.+|++++++.|+.+++|+++.||.
T Consensus 344 ~L~~la~~~~~~-----~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~ 418 (852)
T 4fdd_A 344 ALDVLANVYRDE-----LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRS 418 (852)
T ss_dssp HHHHHHHHHGGG-----GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHCCHH-----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 999998746187-----899999999998559988999999999999986356889987999999999871799889999
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 99999999999982210588999999999975279998899999999999999807666786177479889998518987
Q 000827 911 QAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHE 990 (1265)
Q Consensus 911 ~A~~~lg~La~~l~~~~~~~ll~~L~~~L~e~L~d~~~~V~~~al~aL~~iv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~ 990 (1265)
+|++++|+++.++.......++..+++.|...+.|.++.|+..++++|..+++..+. .+.||++.+++.|+..+++.+.
T Consensus 419 ~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~-~l~~~l~~ll~~L~~~l~~~~~ 497 (852)
T 4fdd_A 419 ITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT-ELVPYLAYILDTLVFAFSKYQH 497 (852)
T ss_dssp HHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG-GGGGGHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCH
T ss_conf 999999999988611047899999999999998589888999999999999997367-6676799999999999988374
Q ss_pred HHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH---HHHHHCHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHH
Q ss_conf 9999999999999850-778769588999999999---9984221999999999999999960909------89999997
Q 000827 991 KVQENCIDLVGRIADR-GAEFVPAREWMRICFELL---EMLKAHKKGIRRATVNTFGYIAKAIGPQ------DVLATLLN 1060 (1265)
Q Consensus 991 ~Vre~ai~~ig~Ia~~-~~~~~~~~e~~~il~~LL---~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~------~vlp~Ll~ 1060 (1265)
+....++++++.|+.. +..+....-+..+++.++ +.+++..+.+| .+++|++.++.++|.. .+++.+++
T Consensus 498 ~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~ 576 (852)
T 4fdd_A 498 KNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVN 576 (852)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7999999999999997424313678999988999999873330469999-999999999999748679889999999999
Q ss_pred HHC-----------------CCCHHHHHHHHHHHHHHHHHCCCC--------CCHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 303-----------------542256979999999998640984--------5189988540799656999999999999
Q 000827 1061 NLK-----------------VQERQNRVCTTVAIAIVAETCSPF--------TVLPALMNEYRVPELNVQNGVLKSLSFL 1115 (1265)
Q Consensus 1061 ~L~-----------------~~e~~~R~~t~~ai~~i~e~~gp~--------~vlPaLl~~~~~~~~~v~~~vl~aL~~l 1115 (1265)
.++ .++...+.++..+++.+++..|.. .+++.++..+.++...++..+..+++.+
T Consensus 577 ~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l 656 (852)
T 4fdd_A 577 LVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDL 656 (852)
T ss_dssp HHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999987533886668876119999999997899987476998836771899999983899844999999999999
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC--CHHHHHHHHH
Q ss_conf 99960222534996999999986039946999999999999810148883258998877630100268--9489999999
Q 000827 1116 FEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFET--SPHVINAVME 1193 (1265)
Q Consensus 1116 ~~~ige~~~~yi~~i~plL~~~l~d~d~~~Rq~A~~~i~~lal~~~~~~~e~~~~~~ln~i~~~i~~~--s~~v~~~~~~ 1193 (1265)
..+.++....|+..++|.+...+.+.+..+|+.|+.++++++.... ....+....+++.+++.+-.+ ...++..++.
T Consensus 657 ~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~-~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~ 735 (852)
T 4fdd_A 657 TKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMG-IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAI 735 (852)
T ss_dssp HHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHG-GGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 9981688898799999999987694206899999999999999711-767878999999999985799887207788999
Q ss_pred HHHHHHHHHCHHHH-------HHHHHHHHCC-HHHHHHHHHHHHHHHHHCCCCCCCEECCCCC
Q ss_conf 99999997399999-------9999974125-0367779999886542035657320046788
Q 000827 1194 AIEGMRVALGAAVV-------LNYCLQGLFH-PARKVREVYWKIYNSLYIGAQDALVAAYPTL 1248 (1265)
Q Consensus 1194 a~~~~~~~~g~~~~-------~~y~~~gl~~-pa~~vr~~~~~~~~~~~~~~~d~~~~~~p~~ 1248 (1265)
+++.+... ++..+ +.-.+..|-+ .....|....+-++.+...+++.+++.++.+
T Consensus 736 ~igrl~~~-~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~ 797 (852)
T 4fdd_A 736 TIGRLGYV-CPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFF 797 (852)
T ss_dssp HHHHHHHH-CHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHH
T ss_pred HHHHHHHH-CHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 99999986-889767558999999999865366607999999999999986918688889999
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=343.41 Aligned_cols=728 Identities=12% Similarity=0.116 Sum_probs=509.8
Q ss_pred HHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 9999998742-589975799999999998853198324988867833999788999999999999983212113566898
Q 000827 455 RKIMKLLLKV-KNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHK 533 (1265)
Q Consensus 455 ~~i~~lll~l-kng~~~vR~~A~r~L~~~A~~~G~~~~~~~lLp~l~~~~l~d~~R~~~v~ii~~i~~~l~~~v~p~~~~ 533 (1265)
..+..+|... -++|..+|+.|...|.+.... .....+..++.++.+...+.+.|+.+..++.+....-...-......
T Consensus 4 ~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~-~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~ 82 (861)
T 2bpt_A 4 AEFAQLLENSILSPDQNIRLTSETQLKKLSND-NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ 82 (861)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 79999999742693979999999999999851-99999999999983789986799999999870225757487899997
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH----CHHHHHHHHH
Q ss_conf 999997320498878899999999999997445999972236888752999999989799999621----9342799999
Q 000827 534 ILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASAL----GIPALLPFLK 609 (1265)
Q Consensus 534 Ll~~i~~lL~ded~~vR~~a~~il~~L~k~~Gl~~~i~~L~~~l~~~d~~vR~~aa~~l~~lA~~l----g~~~Llp~L~ 609 (1265)
.++...++ ..+.. +...+...+.+++..+|+.++++++.++... .||+++|+|.
T Consensus 83 ----~~~~~l~~--~~~~~----------------ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~ 140 (861)
T 2bpt_A 83 ----RWITQVSP--EAKNQ----------------IKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMV 140 (861)
T ss_dssp ----HHHHHSCH--HHHHH----------------HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHH
T ss_pred ----HHHHHCCH--HHHHH----------------HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf ----67662999--99999----------------999999987799637999999999999984676455499999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHCCCCH-H-
Q ss_conf 98707842687989999999999990777---6200798999998403898--734399999999999999475560-2-
Q 000827 610 AVCQSKKSWQARHTGIKIVQQIAILIGCA---VLPHLRSLVEIIEHGLNDE--NQKVRTITALSLAALAEAAAPYGI-E- 682 (1265)
Q Consensus 610 ~~~~s~~s~~~R~aai~~l~~i~~~~g~~---i~p~L~~ll~~i~~~l~De--~~~VR~~A~~al~~La~~~~p~~~-~- 682 (1265)
+.+.+++++..|+.++.+++.++...+.. +.++++.+++.+..++.|+ +..||.+++.+++.+...+..... .
T Consensus 141 ~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 220 (861)
T 2bpt_A 141 DNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREG 220 (861)
T ss_dssp HHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 98726897899999999999999727843567898899999999984157999878999999999999999998706766
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 158869999973203553899999999966511116865443389-9999999971799999999999999996301577
Q 000827 683 SFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTK-EVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGV 761 (1265)
Q Consensus 683 ~~~~iL~~L~~~l~~~~~kala~~l~a~~~liP~l~~~~~~~~~~-~ii~~L~~~l~~~de~~r~~al~~l~~~~~~~g~ 761 (1265)
....+++.+++.+.+...+.....++++..+...... +...|+. .++..+...+.+.+++++..+++++..++.....
T Consensus 221 ~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 299 (861)
T 2bpt_A 221 ERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT-FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEID 299 (861)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG-GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999986599889999999999999999889-999988999999999987377278999999999999987886
Q ss_pred CCHHHHH-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC-------CCCHHHHHHHH
Q ss_conf 6034532-----01599999999975334388899999999999984080446999998714-------89955899999
Q 000827 762 EADYIRS-----DILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLK-------DESEPYRRMVM 829 (1265)
Q Consensus 762 ~~~~i~~-----~ilp~l~~~~~~~~~~~d~~~~~~li~~~~~ia~~~g~~~ii~~i~~~l~-------d~~~~~R~~a~ 829 (1265)
...+..+ ...+.++ ...+..+ ++.+...+. |+.+.+|..+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~i----------------l~~ll~~l~~~~~d~~d~~~~~r~~a~ 352 (861)
T 2bpt_A 300 IAYELAQFPQSPLQSYNFA-----------LSSIKDV----------------VPNLLNLLTRQNEDPEDDDWNVSMSAG 352 (861)
T ss_dssp HHHHHHHCTTCSCCCCCHH-----------HHHHHHH----------------HHHHHHHTTCCCCC-CCCCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHH-----------HHHHHHH----------------HHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 4333210357732569999-----------9999889----------------999999987066530124686899999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-HHHHCHHHHHHHHHHHHHCCCCHHH
Q ss_conf 999999996187871167899989999998400466227989998999999830-3013017778999999713999999
Q 000827 830 ETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLG-QRVKPYLPQICGTIKWRLNNKSAKV 908 (1265)
Q Consensus 830 ~~l~~ii~~lg~~~~~~~~~~~li~~ll~~l~e~~~ed~~~al~aLg~I~~~lg-~~~~p~Lpqiip~Ll~~L~d~~~~V 908 (1265)
.++..++..++.. ....+++.+...+++.....+..++.+++.++++++ ..+.+|++++++.|+..++|+++.|
T Consensus 353 ~~L~~l~~~~~~~-----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~v 427 (861)
T 2bpt_A 353 ACLQLFAQNCGNH-----ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQV 427 (861)
T ss_dssp HHHHHHHHHHGGG-----GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHCCHH-----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 9999999874086-----89999999998757997269999999999998599878889989999999998828995999
Q ss_pred HHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC---CCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999999982210-588999999999975279998899999999999999807---666786177479889998
Q 000827 909 RQQAADLISRIAVVMKQCH-EEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG---MTKMTPPIKDLLPRLTPI 984 (1265)
Q Consensus 909 R~~A~~~lg~La~~l~~~~-~~~ll~~L~~~L~e~L~d~~~~V~~~al~aL~~iv~~~g---~~~l~p~l~~Llp~Ll~~ 984 (1265)
|.++++++|+++.++.... ...++..+++.++..+++. +.|+..+|+++..+++.++ ...+.||++.+++.|+..
T Consensus 428 r~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~ 506 (861)
T 2bpt_A 428 KETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGA 506 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999873540487888999999999976447-2899999999999998623135424689999999999999
Q ss_pred HCC--CCHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHH---------------CHHHHHHHHHHHHHHHH
Q ss_conf 518--987999999999999985077-876958899999999999842---------------21999999999999999
Q 000827 985 LKN--RHEKVQENCIDLVGRIADRGA-EFVPAREWMRICFELLEMLKA---------------HKKGIRRATVNTFGYIA 1046 (1265)
Q Consensus 985 L~~--~~~~Vre~ai~~ig~Ia~~~~-~~~~~~e~~~il~~LL~~Lk~---------------~~~~iR~~a~~tlg~Ia 1046 (1265)
+++ .+..+|..++.+++.++...+ ++.++ ...+++.+++.+.. ....+|..++.+++.++
T Consensus 507 l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~ 584 (861)
T 2bpt_A 507 ANRIDNEFNARASAFSALTTMVEYATDTVAET--SASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVI 584 (861)
T ss_dssp HTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHH--HHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 85758615899999999999999762656999--9999999999999887532013885567779999999999999999
Q ss_pred HHHCCH------HHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHCCC----C--CCHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 960909------899999973035422-5697999999999864098----4--51899885407996569999999999
Q 000827 1047 KAIGPQ------DVLATLLNNLKVQER-QNRVCTTVAIAIVAETCSP----F--TVLPALMNEYRVPELNVQNGVLKSLS 1113 (1265)
Q Consensus 1047 ~~iGp~------~vlp~Ll~~L~~~e~-~~R~~t~~ai~~i~e~~gp----~--~vlPaLl~~~~~~~~~v~~~vl~aL~ 1113 (1265)
+.+|+. .+++.+++.++..+. .+|..+..+++.+++.++. | .++|.|++.+..++..++..++.+++
T Consensus 585 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~ 664 (861)
T 2bpt_A 585 RKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIA 664 (861)
T ss_dssp HHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 98556347899999999999974678875799999999999999766099999999999998865566789999999999
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC----CC---
Q ss_conf 99999602225349969999999860399--4699999999999981014888325899887763010026----89---
Q 000827 1114 FLFEYIGEMGKDYIYAVTPLLEDALMDRD--LVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFE----TS--- 1184 (1265)
Q Consensus 1114 ~l~~~ige~~~~yi~~i~plL~~~l~d~d--~~~Rq~A~~~i~~lal~~~~~~~e~~~~~~ln~i~~~i~~----~s--- 1184 (1265)
.+...+|+...+|+..++|.+...+.+.+ ..+|+.++.+++.++..++ +.|..+++.++|.++. ..
T Consensus 665 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~-----~~~~~~l~~~l~~l~~~~~~~~~~~ 739 (861)
T 2bpt_A 665 DISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG-----ADFIPYLNDIMALCVAAQNTKPENG 739 (861)
T ss_dssp HHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG-----GGGHHHHHHHHHHHHHHHTCCCSSS
T ss_pred HHHHHHCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99987454031119999999999727865567665999999999999840-----5089999999999999973678999
Q ss_pred --------HHHHHHHHHHHHHHHHHHC--HHHH-------HHHHHHHHCCH----HHHHHHHHHHHHHHHHCCC-CCCCE
Q ss_conf --------4899999999999999739--9999-------99999741250----3677799998865420356-57320
Q 000827 1185 --------PHVINAVMEAIEGMRVALG--AAVV-------LNYCLQGLFHP----ARKVREVYWKIYNSLYIGA-QDALV 1242 (1265)
Q Consensus 1185 --------~~v~~~~~~a~~~~~~~~g--~~~~-------~~y~~~gl~~p----a~~vr~~~~~~~~~~~~~~-~d~~~ 1242 (1265)
..||.++++++..+...+| +..+ +..+...+-++ ...||.....+++.+.... +..+.
T Consensus 740 d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~ 819 (861)
T 2bpt_A 740 TLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIK 819 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 75889999999999999999999998267788999999999999998748555786999999999999999882882488
Q ss_pred ECCC
Q ss_conf 0467
Q 000827 1243 AAYP 1246 (1265)
Q Consensus 1243 ~~~p 1246 (1265)
+|++
T Consensus 820 ~~~~ 823 (861)
T 2bpt_A 820 QFYG 823 (861)
T ss_dssp GGTT
T ss_pred HHHH
T ss_conf 9872
No 3
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=329.03 Aligned_cols=564 Identities=18% Similarity=0.241 Sum_probs=429.8
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 9999998742589975799999999998853198324988867833999-788999999999999983212113566898
Q 000827 455 RKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPT-LEDQERHLLVKVIDRVLYKLDELVRPYVHK 533 (1265)
Q Consensus 455 ~~i~~lll~lkng~~~vR~~A~r~L~~~A~~~G~~~~~~~lLp~l~~~~-l~d~~R~~~v~ii~~i~~~l~~~v~p~~~~ 533 (1265)
..+..++..++++++.+|..|++.|..++..+|+....+.++|.+.+.. .++..|..+...++.+....+. ..|.+.
T Consensus 10 ~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~--~~~~~~ 87 (588)
T 1b3u_A 10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGG--PEYVHC 87 (588)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTS--GGGGGG
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC--HHHHHH
T ss_conf 749999998506219999999971999999869798999899889875578589999999999778760585--989999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHC
Q ss_conf 99999732049887889999999999999744599997223688875299999998979999962193427999999870
Q 000827 534 ILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQ 613 (1265)
Q Consensus 534 Ll~~i~~lL~ded~~vR~~a~~il~~L~k~~Gl~~~i~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~~~~ 613 (1265)
++..+..++.|++..||..+.+++.+++...+- +.+ ++.++|++...+.
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~---------------~~~----------------~~~l~~~l~~l~~ 136 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSP---------------SDL----------------EAHFVPLVKRLAG 136 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH---------------HHH----------------HHTHHHHHHHHHT
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCH---------------HHH----------------HHHHHHHHHHHHC
T ss_conf 899999987476079999999999999997999---------------999----------------9999999999850
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 78426879899999999999907776200798999998403898734399999999999999475560215886999997
Q 000827 614 SKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWK 693 (1265)
Q Consensus 614 s~~s~~~R~aai~~l~~i~~~~g~~i~p~L~~ll~~i~~~l~De~~~VR~~A~~al~~La~~~~p~~~~~~~~iL~~L~~ 693 (1265)
++. |..|++++.+++.++...+ ..+.+.+++.+...+.|+++.||..++.+++.+++.+++. .
T Consensus 137 ~~~-~~~R~~a~~~l~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~---------- 199 (588)
T 1b3u_A 137 GDW-FTSRTSACGLFSVCYPRVS---SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---N---------- 199 (588)
T ss_dssp CSS-HHHHHHHGGGHHHHTTTSC---HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---H----------
T ss_pred CCC-CHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH---H----------
T ss_conf 777-1799999999999998569---9999999999999848997889999999899999981677---6----------
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHH
Q ss_conf 32035538999999999665111168654433899999999971799999999999999996301577603453201599
Q 000827 694 GIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPE 773 (1265)
Q Consensus 694 ~l~~~~~kala~~l~a~~~liP~l~~~~~~~~~~~ii~~L~~~l~~~de~~r~~al~~l~~~~~~~g~~~~~i~~~ilp~ 773 (1265)
+...+++.+...++++++.+|..+++++..++...+ .......
T Consensus 200 -------------------------------~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~---- 242 (588)
T 1b3u_A 200 -------------------------------VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP--QEDLEAL---- 242 (588)
T ss_dssp -------------------------------HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC--HHHHHHH----
T ss_pred -------------------------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC--HHHHHHH----
T ss_conf -------------------------------799999999988249928899989999999998579--8888878----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999997533438889999999999998408044699999871489955899999999999996187871167899989
Q 000827 774 FFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLI 853 (1265)
Q Consensus 774 l~~~~~~~~~~~d~~~~~~li~~~~~ia~~~g~~~ii~~i~~~l~d~~~~~R~~a~~~l~~ii~~lg~~~~~~~~~~~li 853 (1265)
+++.+...+.|.++.+|..++.++..++...+.. .....++
T Consensus 243 -----------------------------------~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~l~ 283 (588)
T 1b3u_A 243 -----------------------------------VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE----ITKTDLV 283 (588)
T ss_dssp -----------------------------------THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH----HHHHTHH
T ss_pred -----------------------------------HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC----CCHHHHH
T ss_conf -----------------------------------9999999806997789999999999999981952----1055899
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHH--CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 9999984004662279899989999998303013--01777899999971399999999999999999999822105889
Q 000827 854 DGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVK--PYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQL 931 (1265)
Q Consensus 854 ~~ll~~l~e~~~ed~~~al~aLg~I~~~lg~~~~--p~Lpqiip~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~l 931 (1265)
+.++..+.+...+.+..++.+|+.++..++.... ++++.++|.+...++|+++.||.+++++++.++..++. +..
T Consensus 284 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~ 360 (588)
T 1b3u_A 284 PAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNT 360 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH---HHH
T ss_conf 99999858995899999998799999972744436579999999999986199889999999999999888627---678
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-CCCC
Q ss_conf 999999999752799988999999999999998076667861774798899985189879999999999999850-7787
Q 000827 932 MGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR-GAEF 1010 (1265)
Q Consensus 932 l~~L~~~L~e~L~d~~~~V~~~al~aL~~iv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~-~~~~ 1010 (1265)
.+.+.+.+...+.|++++|+..++.+++.++..++... +.+.++|.+...+++.++++|..++.+++.++.. +.++
T Consensus 361 ~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 437 (588)
T 1b3u_A 361 IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF 437 (588)
T ss_dssp HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH---HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHH
T ss_conf 88899999998379836899999998999997549898---988889999998359981399999999999998809898
Q ss_pred CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 695889999999999984221999999999999999960909----8999999730354225697999999999864098
Q 000827 1011 VPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP 1086 (1265)
Q Consensus 1011 ~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~----~vlp~Ll~~L~~~e~~~R~~t~~ai~~i~e~~gp 1086 (1265)
... .+++.++..+++....+|..++.+++.++..+|+. .++|.|.+.++.++..+|.++..+++.+++.+++
T Consensus 438 ~~~----~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~ 513 (588)
T 1b3u_A 438 FDE----KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ 513 (588)
T ss_dssp CCH----HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCH
T ss_conf 999----9999999882598199999999999999999684457888999999983189879999999999999976698
Q ss_pred C----CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 4----518998854079965699999999999999960222534996999999986039946999999999999
Q 000827 1087 F----TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHM 1156 (1265)
Q Consensus 1087 ~----~vlPaLl~~~~~~~~~v~~~vl~aL~~l~~~ige~~~~yi~~i~plL~~~l~d~d~~~Rq~A~~~i~~l 1156 (1265)
. .++|.|++.+++++.+|+..++++++.++..+|... +...+.|.|...+.|.|..+|+.|+.++..+
T Consensus 514 ~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 514 DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST--LQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH--HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999866789986279999999999999865364--5999999999874799666999999999976
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=323.84 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEECCC
Q ss_conf 89999999999999973----99999999997412503677799998865420356573200467
Q 000827 1186 HVINAVMEAIEGMRVAL----GAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYP 1246 (1265)
Q Consensus 1186 ~v~~~~~~a~~~~~~~~----g~~~~~~y~~~gl~~pa~~vr~~~~~~~~~~~~~~~d~~~~~~p 1246 (1265)
++|..+.+|+..+.... ...-+++.++.||-+. .++|...+.++-.+...++.++.+.++
T Consensus 1080 ~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~gl~d~-~di~~~~~~~l~~l~~~~~~~~~~~~~ 1143 (1230)
T 1u6g_C 1080 DIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLCPSAVLQRLD 1143 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHSCCHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 9999999999999998887478999999998046766-889999999999998408798999999
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=321.04 Aligned_cols=658 Identities=13% Similarity=0.147 Sum_probs=305.8
Q ss_pred HHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHCC-------------------H
Q ss_conf 75799999999998853198--324988867833999--788999999999999983212-------------------1
Q 000827 469 PPQRKTALRQLTDKAREFGA--GPLFNRILPLLMQPT--LEDQERHLLVKVIDRVLYKLD-------------------E 525 (1265)
Q Consensus 469 ~~vR~~A~r~L~~~A~~~G~--~~~~~~lLp~l~~~~--l~d~~R~~~v~ii~~i~~~l~-------------------~ 525 (1265)
..+|..|+.+|..++..+|. .+.+..++|.+.... .++..|..++..+..++...+ .
T Consensus 347 ~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (1230)
T 1u6g_C 347 WKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLT 426 (1230)
T ss_dssp THHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHH
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
T ss_conf 79999999999999974666799999999899998717986579999999999999972424343467520135645599
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC------HHHHHHHHCCCCCCCH--HHHHHHHHHHHHHHHH
Q ss_conf 1356689899999732049887889999999999999744------5999972236888752--9999999897999996
Q 000827 526 LVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAG------LATMIAAMRPDIDNID--EYVRNTTARAFSVVAS 597 (1265)
Q Consensus 526 ~v~p~~~~Ll~~i~~lL~ded~~vR~~a~~il~~L~k~~G------l~~~i~~L~~~l~~~d--~~vR~~aa~~l~~lA~ 597 (1265)
.+.++++.+++.+...+.|+++.+|..+..+++.+++..+ +..++..+...+.+.. ..+|..++..++.+..
T Consensus 427 ~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~ 506 (1230)
T 1u6g_C 427 MLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILC 506 (1230)
T ss_dssp HHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99987469999999986137787999999999999997611057779999999999974878851689999999999998
Q ss_pred HHC-------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHHHC--CCCCHHH
Q ss_conf 219-------3427999999870784268798999999999999077-------76200798999998403--8987343
Q 000827 598 ALG-------IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGC-------AVLPHLRSLVEIIEHGL--NDENQKV 661 (1265)
Q Consensus 598 ~lg-------~~~Llp~L~~~~~s~~s~~~R~aai~~l~~i~~~~g~-------~i~p~L~~ll~~i~~~l--~De~~~V 661 (1265)
..+ ++.++|.|...+.+.. |..|..++.+++.++..+|. .+.||++.+++.+...+ .|++..|
T Consensus 507 ~~~~~~~~~~l~~llp~L~~~l~d~~-~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~v 585 (1230)
T 1u6g_C 507 NHSPQVFHPHVQALVPPVVACVGDPF-YKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEV 585 (1230)
T ss_dssp SSCGGGGHHHHTTTHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 38988788679999999999971424-68999999999999987167555653232789999999999987326998899
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999475560215886999997320355389999999996651111686544338999999999717999
Q 000827 662 RTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPD 741 (1265)
Q Consensus 662 R~~A~~al~~La~~~~p~~~~~~~~iL~~L~~~l~~~~~kala~~l~a~~~liP~l~~~~~~~~~~~ii~~L~~~l~~~d 741 (1265)
|..++.+++.++...+.....++..+++.|...+.+...+ ...+++++.+.....+.....+...+++.|...+.+.+
T Consensus 586 r~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r--~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~ 663 (1230)
T 1u6g_C 586 KERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITR--LTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQ 663 (1230)
T ss_dssp HHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHH--HHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999827032443889999999884453059--99999999998185644368889999999999998678
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHH
Q ss_conf 99999999999996301577603453201599999999975334388899999999999984080------446999998
Q 000827 742 EEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGV------ADIVGRIVE 815 (1265)
Q Consensus 742 e~~r~~al~~l~~~~~~~g~~~~~i~~~ilp~l~~~~~~~~~~~d~~~~~~li~~~~~ia~~~g~------~~ii~~i~~ 815 (1265)
..+|..++.++..++...+. . +....+.+++..++......|.......++++..+....+. +.++..+..
T Consensus 664 ~~~r~~a~~al~~l~~~~~~--~-~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~ 740 (1230)
T 1u6g_C 664 RALKLGTLSALDILIKNYSD--S-LTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIG 740 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHCCT--T-CCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCC--C-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 88999999999999960433--3-89899999999987635754187899999999999884912677767768999999
Q ss_pred HHCCCC----------------------------------------------HHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 714899----------------------------------------------5589999999999999618787116789
Q 000827 816 DLKDES----------------------------------------------EPYRRMVMETIEKVVANLGASDIDARLE 849 (1265)
Q Consensus 816 ~l~d~~----------------------------------------------~~~R~~a~~~l~~ii~~lg~~~~~~~~~ 849 (1265)
.+.... ...+..++.++..++...+....
T Consensus 741 ~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~----- 815 (1230)
T 1u6g_C 741 LVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP----- 815 (1230)
T ss_dssp HHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH-----
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH-----
T ss_conf 975862105789999999999983478878899999998500357887320001048999999999984656668-----
Q ss_pred HHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 998999999840046622--798999899999983030130177789999997139999999999999999999982210
Q 000827 850 ELLIDGILYAFQEQTSDD--ANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCH 927 (1265)
Q Consensus 850 ~~li~~ll~~l~e~~~ed--~~~al~aLg~I~~~lg~~~~p~Lpqiip~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~ 927 (1265)
.+++.++..+......+ +..++.+++.+... ..+.+ .+++.+.++.+++|.++.||.+|+.++|.++..- .
T Consensus 816 -~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~--~~~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~---~ 888 (1230)
T 1u6g_C 816 -AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHH--IDLSG-QLELKSVILEAFSSPSEEVKSAASYALGSISVGN---L 888 (1230)
T ss_dssp -HHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHH--SCCCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHT---H
T ss_pred -HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC--CCCCC-CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC---H
T ss_conf -999999998378876679999999999986156--78765-6418999999847997789999999968775269---9
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 58899999999997527999889999999999999980766678617747988999851898799999999999998507
Q 000827 928 EEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG 1007 (1265)
Q Consensus 928 ~~~ll~~L~~~L~e~L~d~~~~V~~~al~aL~~iv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~ 1007 (1265)
..+++ .+.+.+... ++++...+.+|++++...+...+.|++..|++.|+..+.+.++.+|..++.++|.++...
T Consensus 889 -~~~lp----~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~ 962 (1230)
T 1u6g_C 889 -PEYLP----FVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID 962 (1230)
T ss_dssp -HHHHH----HHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS
T ss_pred -HHHHH----HHHHHHHCC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf -98899----999987266-032498899999998238766677669999999998733830446899998875665067
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 787695889999999999984221999999999999999960909------89999997303542256979999999998
Q 000827 1008 AEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQ------DVLATLLNNLKVQERQNRVCTTVAIAIVA 1081 (1265)
Q Consensus 1008 ~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~------~vlp~Ll~~L~~~e~~~R~~t~~ai~~i~ 1081 (1265)
++ .+++.|.+.+++....+|..++.+++.+....++. .+++.|+..+++++..+|..++.+++.++
T Consensus 963 ~~--------~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~ 1034 (1230)
T 1u6g_C 963 PE--------TLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAA 1034 (1230)
T ss_dssp GG--------GTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHH
T ss_pred HH--------HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 68--------8889999985699788999999999999706823358989998999998648985879999999999998
Q ss_pred HHCCC----C--CCHHHHHHHCCCC------------------CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 64098----4--5189988540799------------------6569999999999999996022253499699999998
Q 000827 1082 ETCSP----F--TVLPALMNEYRVP------------------ELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDA 1137 (1265)
Q Consensus 1082 e~~gp----~--~vlPaLl~~~~~~------------------~~~v~~~vl~aL~~l~~~ige~~~~yi~~i~plL~~~ 1137 (1265)
...+. + .++|.|++..... ++.++..+..|+..+++...... + +..+++.+...
T Consensus 1035 ~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i-~-~~~~~~~~~~g 1112 (1230)
T 1u6g_C 1035 HNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL-D-IFEFLNHVEDG 1112 (1230)
T ss_dssp HHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSS-C-HHHHHHHHHHT
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-C-HHHHHHHHHCC
T ss_conf 428576897798898999988302687601330589602367748999999999999999888747-8-99999999804
Q ss_pred HCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 603994699999999999981014
Q 000827 1138 LMDRDLVHRQTAASAVKHMALGVA 1161 (1265)
Q Consensus 1138 l~d~d~~~Rq~A~~~i~~lal~~~ 1161 (1265)
+.|. ..+|-.+...+.+++-.++
T Consensus 1113 l~d~-~di~~~~~~~l~~l~~~~~ 1135 (1230)
T 1u6g_C 1113 LKDH-YDIKMLTFLMLVRLSTLCP 1135 (1230)
T ss_dssp TSSC-HHHHHHHHHHHHHHHHSCC
T ss_pred CCCH-HHHHHHHHHHHHHHHHCCH
T ss_conf 6766-8899999999999984087
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=317.38 Aligned_cols=675 Identities=11% Similarity=0.098 Sum_probs=479.5
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHCCHH---
Q ss_conf 999999998742589975799999999998853198324988867833---99978899999999999998321211---
Q 000827 453 KERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLM---QPTLEDQERHLLVKVIDRVLYKLDEL--- 526 (1265)
Q Consensus 453 ~~~~i~~lll~lkng~~~vR~~A~r~L~~~A~~~G~~~~~~~lLp~l~---~~~l~d~~R~~~v~ii~~i~~~l~~~--- 526 (1265)
++..--.++..+.+.++.+|+.+.++|+.+++..++......+++.++ ++..++..|+.++.++..++...+..
T Consensus 93 ~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 172 (861)
T 2bpt_A 93 KNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQA 172 (861)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSST
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99999999998779963799999999999998467645549999999998726897899999999999999727843567
Q ss_pred HHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 3566898999997320498--87889999999999999744599997223688875299999998979999962193427
Q 000827 527 VRPYVHKILVVIEPLLIDE--DYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPAL 604 (1265)
Q Consensus 527 v~p~~~~Ll~~i~~lL~de--d~~vR~~a~~il~~L~k~~Gl~~~i~~L~~~l~~~d~~vR~~aa~~l~~lA~~lg~~~L 604 (1265)
+.++...|+..+...+.|+ +..||..+.+++..++...+-. + .. . ..++.+
T Consensus 173 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~-----~----~~--~----------------~~~~~l 225 (861)
T 2bpt_A 173 LVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN-----M----ER--E----------------GERNYL 225 (861)
T ss_dssp TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH-----H----TS--H----------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-----C----CC--H----------------HHHHHH
T ss_conf 8988999999999841579998789999999999999999987-----0----67--6----------------689999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC-----
Q ss_conf 9999998707842687989999999999990777620079-8999998403898734399999999999999475-----
Q 000827 605 LPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLR-SLVEIIEHGLNDENQKVRTITALSLAALAEAAAP----- 678 (1265)
Q Consensus 605 lp~L~~~~~s~~s~~~R~aai~~l~~i~~~~g~~i~p~L~-~ll~~i~~~l~De~~~VR~~A~~al~~La~~~~p----- 678 (1265)
++.|...+.+++ |..|+.++.++..++...+..+.+|+. .+++.+...+.|.+..||..++..+..+++....
T Consensus 226 l~~l~~~~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 304 (861)
T 2bpt_A 226 MQVVCEATQAED-IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYEL 304 (861)
T ss_dssp HHHHHHHHTCSC-HHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999865998-8999999999999999988999998899999999998737727899999999999998788643332
Q ss_pred ------------CCHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf ------------56021588699999732035-------53899999999966511116865443389999999997179
Q 000827 679 ------------YGIESFDSVLKPLWKGIRSH-------RGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQS 739 (1265)
Q Consensus 679 ------------~~~~~~~~iL~~L~~~l~~~-------~~kala~~l~a~~~liP~l~~~~~~~~~~~ii~~L~~~l~~ 739 (1265)
.....+..+++.++..+.+. ......+...+++.+...+. ......+++.+...+++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~----~~~~~~l~~~l~~~l~~ 380 (861)
T 2bpt_A 305 AQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG----NHILEPVLEFVEQNITA 380 (861)
T ss_dssp HHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHTTC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHCCC
T ss_conf 10357732569999999988999999998706653012468689999999999998740----86899999999987579
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf 99999999999999963015776034532015999999999753343888999999999999840804469999987148
Q 000827 740 PDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKD 819 (1265)
Q Consensus 740 ~de~~r~~al~~l~~~~~~~g~~~~~i~~~ilp~l~~~~~~~~~~~d~~~~~~li~~~~~ia~~~g~~~ii~~i~~~l~d 819 (1265)
.+...|..++.+++.++...+ +..+ .+++ +.++..+...++|
T Consensus 381 ~~~~~r~~a~~~l~~i~~~~~--~~~~-----~~~l-------------------------------~~il~~l~~~l~d 422 (861)
T 2bpt_A 381 DNWRNREAAVMAFGSIMDGPD--KVQR-----TYYV-------------------------------HQALPSILNLMND 422 (861)
T ss_dssp SSHHHHHHHHHHHHHTSSSSC--HHHH-----HHHH-------------------------------HHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHHHHCCCC--HHHH-----HHHH-------------------------------HHHHHHHHHHCCC
T ss_conf 972699999999999985998--7888-----9989-------------------------------9999999988289
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC----HHHHCHHHHHHH
Q ss_conf 9955899999999999996187871167899989999998400466227989998999999830----301301777899
Q 000827 820 ESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLG----QRVKPYLPQICG 895 (1265)
Q Consensus 820 ~~~~~R~~a~~~l~~ii~~lg~~~~~~~~~~~li~~ll~~l~e~~~ed~~~al~aLg~I~~~lg----~~~~p~Lpqiip 895 (1265)
.++.+|..++.++.+++..++...........+++.++..+.+. ...+..++.+++.+++.++ ..+.||++.+++
T Consensus 423 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~ 501 (861)
T 2bpt_A 423 QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVD 501 (861)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 95999999999999999873540487888999999999976447-28999999999999986231354246899999999
Q ss_pred HHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHH
Q ss_conf 99997139--99999999999999999998221058899999999997527---------------99988999999999
Q 000827 896 TIKWRLNN--KSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLG---------------EEYPEVLGSILGAL 958 (1265)
Q Consensus 896 ~Ll~~L~d--~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~e~L~---------------d~~~~V~~~al~aL 958 (1265)
.|+..+++ .++.||..++.+++.++...+... ..++..+.+.+++.+. +...+++..++.+|
T Consensus 502 ~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 580 (861)
T 2bpt_A 502 GLIGAANRIDNEFNARASAFSALTTMVEYATDTV-AETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVL 580 (861)
T ss_dssp HHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGG-HHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999985758615899999999999999762656-999999999999999988753201388556777999999999999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 99999807666786177479889998518987-9999999999999850-778769588999999999998422199999
Q 000827 959 KAIVNVIGMTKMTPPIKDLLPRLTPILKNRHE-KVQENCIDLVGRIADR-GAEFVPAREWMRICFELLEMLKAHKKGIRR 1036 (1265)
Q Consensus 959 ~~iv~~~g~~~l~p~l~~Llp~Ll~~L~~~~~-~Vre~ai~~ig~Ia~~-~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~ 1036 (1265)
..++..+|. .+.||++.+++.++..+++.+. .+|+.++.+++.++.. +.++.++. ..+++.+++.+++....+|.
T Consensus 581 ~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~ 657 (861)
T 2bpt_A 581 AAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSI 657 (861)
T ss_dssp HHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCCHHHHH
T ss_conf 999998556-347899999999999974678875799999999999999766099999--99999999886556678999
Q ss_pred HHHHHHHHHHHHHCCH------HHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHCCC----C--CCHHHHHHHCCCCC-
Q ss_conf 9999999999960909------89999997303542--25697999999999864098----4--51899885407996-
Q 000827 1037 ATVNTFGYIAKAIGPQ------DVLATLLNNLKVQE--RQNRVCTTVAIAIVAETCSP----F--TVLPALMNEYRVPE- 1101 (1265)
Q Consensus 1037 ~a~~tlg~Ia~~iGp~------~vlp~Ll~~L~~~e--~~~R~~t~~ai~~i~e~~gp----~--~vlPaLl~~~~~~~- 1101 (1265)
.++.+++.+++.+|.. .+++.+++.++.++ ..+|..+..+++.++..+|+ | .++|.|+.......
T Consensus 658 ~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 737 (861)
T 2bpt_A 658 TAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPE 737 (861)
T ss_dssp HHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999998745403111999999999972786556766599999999999984050899999999999999736789
Q ss_pred ----------HHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf ----------5699999999999999960---222534996999999986039----94699999999999981014888
Q 000827 1102 ----------LNVQNGVLKSLSFLFEYIG---EMGKDYIYAVTPLLEDALMDR----DLVHRQTAASAVKHMALGVAGLG 1164 (1265)
Q Consensus 1102 ----------~~v~~~vl~aL~~l~~~ig---e~~~~yi~~i~plL~~~l~d~----d~~~Rq~A~~~i~~lal~~~~~~ 1164 (1265)
.+++.+++++++.++..++ .....|+..+++.|...+.|. +..+|+.|+.+++.++...+|..
T Consensus 738 ~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~ 817 (861)
T 2bpt_A 738 NGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGS 817 (861)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTST
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99758899999999999999999999982677889999999999999987485557869999999999999998828824
Q ss_pred CHHHHH-HHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 325899-88776301002---689489999999999999973
Q 000827 1165 CEDALV-HLLNYVWPNIF---ETSPHVINAVMEAIEGMRVAL 1202 (1265)
Q Consensus 1165 ~e~~~~-~~ln~i~~~i~---~~s~~v~~~~~~a~~~~~~~~ 1202 (1265)
....+. .++..++..+- +....++..+-.+++.+...+
T Consensus 818 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 818 IKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQL 859 (861)
T ss_dssp TGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 889872679999999885355788778999999999999873
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=312.31 Aligned_cols=728 Identities=15% Similarity=0.128 Sum_probs=454.7
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99998742589975799999999998853198324988867833999788999999999999983212113566898999
Q 000827 457 IMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILV 536 (1265)
Q Consensus 457 i~~lll~lkng~~~vR~~A~r~L~~~A~~~G~~~~~~~lLp~l~~~~l~d~~R~~~v~ii~~i~~~l~~~v~p~~~~Ll~ 536 (1265)
+..+|..+-+++..+|+.|...|.+..... ...++..++..+.+...+...|+.+...+.+........... ...
T Consensus 3 l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~-~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~----~~~ 77 (876)
T 1qgr_A 3 LITILEKTVSPDRLELEAAQKFLERAAVEN-LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA----QYQ 77 (876)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH----HHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHH----HHH
T ss_conf 899999762989899999999999987168-046999999998578998799999999998760554347678----998
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHH
Q ss_conf 997320498878899999999999997445999972236888752999999989799999621----9342799999987
Q 000827 537 VIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASAL----GIPALLPFLKAVC 612 (1265)
Q Consensus 537 ~i~~lL~ded~~vR~~a~~il~~L~k~~Gl~~~i~~L~~~l~~~d~~vR~~aa~~l~~lA~~l----g~~~Llp~L~~~~ 612 (1265)
.-++.+ +...+..- ...+...+.+.+..+ +.++++++.++... .|++++|+|.+.+
T Consensus 78 ~~w~~l---~~~~~~~i----------------k~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l 137 (876)
T 1qgr_A 78 QRWLAI---DANARREV----------------KNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANV 137 (876)
T ss_dssp HHHHTS---CHHHHHHH----------------HHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHH
T ss_pred HHHCCC---CHHHHHHH----------------HHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 644069---99999999----------------999999867994788-9999999999984676225688999999987
Q ss_pred CCC--CHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHCCCCHH-HH-H
Q ss_conf 078--426879899999999999907-776200798999998403898--7343999999999999994755602-15-8
Q 000827 613 QSK--KSWQARHTGIKIVQQIAILIG-CAVLPHLRSLVEIIEHGLNDE--NQKVRTITALSLAALAEAAAPYGIE-SF-D 685 (1265)
Q Consensus 613 ~s~--~s~~~R~aai~~l~~i~~~~g-~~i~p~L~~ll~~i~~~l~De--~~~VR~~A~~al~~La~~~~p~~~~-~~-~ 685 (1265)
.++ + +..|++++.+++.++...+ ..+.++++.+++.+..++.++ +..||..++.+++.++..+...... .+ .
T Consensus 138 ~~~~~~-~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 216 (876)
T 1qgr_A 138 TNPNST-EHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH 216 (876)
T ss_dssp HCTTCC-HHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHH
T ss_pred HCCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 088987-9999999999999987458766786799999999986167999889999999999999999999887178999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 869999973203553899999999966511116865443389-9999999971799999999999999996301577603
Q 000827 686 SVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTK-EVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEAD 764 (1265)
Q Consensus 686 ~iL~~L~~~l~~~~~kala~~l~a~~~liP~l~~~~~~~~~~-~ii~~L~~~l~~~de~~r~~al~~l~~~~~~~g~~~~ 764 (1265)
.+++.++..+.+...+.....++++..++..... ....|+. .+++.+...+.+.+++++..+++.+..++.... .
T Consensus 217 ~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~---~ 292 (876)
T 1qgr_A 217 FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ-YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM---D 292 (876)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG-GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---H
T ss_conf 9999999871799889999999999999998699-99988778999999999638734999999999999988787---6
Q ss_pred HHHHCCHHHHHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------CCCCHHHHHHHHHH
Q ss_conf 45320159999999997----53--3438889999999999998408044699999871-------48995589999999
Q 000827 765 YIRSDILPEFFRNFWVR----RM--ALDRRNYKQLVETTVEIANKVGVADIVGRIVEDL-------KDESEPYRRMVMET 831 (1265)
Q Consensus 765 ~i~~~ilp~l~~~~~~~----~~--~~d~~~~~~li~~~~~ia~~~g~~~ii~~i~~~l-------~d~~~~~R~~a~~~ 831 (1265)
.. .+..+ ... .. +. ...+.....+ +..+...+ .++++.+|+.++.+
T Consensus 293 ~~-~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l----------------l~~ll~~l~~~~~d~~~~~~~~r~~a~~~ 351 (876)
T 1qgr_A 293 LA-IEASE-AAE---QGRPPEHTSKFYAKGALQYL----------------VPILTQTLTKQDENDDDDDWNPCKAAGVC 351 (876)
T ss_dssp HH-HHHHH-HHH---HSSCCSSCCCCHHHHHHHHH----------------HHHHHHHTTCCCSSCCTTCCCHHHHHHHH
T ss_pred HH-HHHCC-CCC---CCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 76-65100-112---47775420189999989887----------------07999875313344454521799999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-HHHHCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 9999996187871167899989999998400466227989998999999830-301301777899999971399999999
Q 000827 832 IEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLG-QRVKPYLPQICGTIKWRLNNKSAKVRQ 910 (1265)
Q Consensus 832 l~~ii~~lg~~~~~~~~~~~li~~ll~~l~e~~~ed~~~al~aLg~I~~~lg-~~~~p~Lpqiip~Ll~~L~d~~~~VR~ 910 (1265)
+..++...+.. ....+++.+...+.+.....+..++.+|+.++++++ ..+.+|+++++|.++..++|+++.||.
T Consensus 352 l~~l~~~~~~~-----~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~ 426 (876)
T 1qgr_A 352 LMLLATCCEDD-----IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRD 426 (876)
T ss_dssp HHHHHHHHGGG-----GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHCCHH-----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999877586-----6999999999884699828999999999999748877789999999999999986799789999
Q ss_pred HHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC-------------CCCCCCCHHH
Q ss_conf 99999999999982210-588999999999975279998899999999999999807-------------6667861774
Q 000827 911 QAADLISRIAVVMKQCH-EEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG-------------MTKMTPPIKD 976 (1265)
Q Consensus 911 ~A~~~lg~La~~l~~~~-~~~ll~~L~~~L~e~L~d~~~~V~~~al~aL~~iv~~~g-------------~~~l~p~l~~ 976 (1265)
.|++++++++.++.... ....+..+++.++..+.+. +.|+..++++|..++..++ ...+.||++.
T Consensus 427 ~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (876)
T 1qgr_A 427 TAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFEL 505 (876)
T ss_dssp HHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHH
T ss_pred HHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999999999857201144777999999999987588-889999999999999985020123444455540321576999
Q ss_pred HHHHHHHHHCCC---CHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHH-----------CH----HHHHHH
Q ss_conf 798899985189---879999999999999850-77876958899999999999842-----------21----999999
Q 000827 977 LLPRLTPILKNR---HEKVQENCIDLVGRIADR-GAEFVPAREWMRICFELLEMLKA-----------HK----KGIRRA 1037 (1265)
Q Consensus 977 Llp~Ll~~L~~~---~~~Vre~ai~~ig~Ia~~-~~~~~~~~e~~~il~~LL~~Lk~-----------~~----~~iR~~ 1037 (1265)
+++.|+..+.+. +..+|..++++++.++.. +.++.++ ...++..+++.+.. .. ..+|..
T Consensus 506 il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~ 583 (876)
T 1qgr_A 506 IVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPA--VQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSL 583 (876)
T ss_dssp HHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHH--HHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999999727674204699999999999999774311899--9999999999999999887124886359999999999
Q ss_pred HHHHHHHHHHHHC-CH------HHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHCCC----C--CCHHHHHHHCCCC-C
Q ss_conf 9999999999609-09------89999997303542--25697999999999864098----4--5189988540799-6
Q 000827 1038 TVNTFGYIAKAIG-PQ------DVLATLLNNLKVQE--RQNRVCTTVAIAIVAETCSP----F--TVLPALMNEYRVP-E 1101 (1265)
Q Consensus 1038 a~~tlg~Ia~~iG-p~------~vlp~Ll~~L~~~e--~~~R~~t~~ai~~i~e~~gp----~--~vlPaLl~~~~~~-~ 1101 (1265)
++.+++.++..+| .. .++|.|++.++... ..+|..+..+++.++..++. | .++|.|+..+..+ +
T Consensus 584 ~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 663 (876)
T 1qgr_A 584 LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAE 663 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999998285420578999999999999853688885089999999999998760999999999999998758650
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 569999999999999996022253499699999998603--994699999999999981014888325899887763010
Q 000827 1102 LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMD--RDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPN 1179 (1265)
Q Consensus 1102 ~~v~~~vl~aL~~l~~~ige~~~~yi~~i~plL~~~l~d--~d~~~Rq~A~~~i~~lal~~~~~~~e~~~~~~ln~i~~~ 1179 (1265)
..++..++.+++.+...+|+....|+..+++.|...+.+ .+..+|..++.+++.++..+++ .+...+..++..+...
T Consensus 664 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~-~~~~~l~~~~~~l~~~ 742 (876)
T 1qgr_A 664 YQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG-EFKKYLEVVLNTLQQA 742 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG-GGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHH
T ss_conf 879999999999999988785464599999999997487123387639999999999997035-2799999999999999
Q ss_pred CCCCC-----------HHHHHHHHHHHHHHHHHHCH---------H-------HHHHHHHHHHCCH--HHHHHHHHHHHH
Q ss_conf 02689-----------48999999999999997399---------9-------9999999741250--367779999886
Q 000827 1180 IFETS-----------PHVINAVMEAIEGMRVALGA---------A-------VVLNYCLQGLFHP--ARKVREVYWKIY 1230 (1265)
Q Consensus 1180 i~~~s-----------~~v~~~~~~a~~~~~~~~g~---------~-------~~~~y~~~gl~~p--a~~vr~~~~~~~ 1230 (1265)
+-... ..++..+.+++..+...+|. . .++.++...+-++ ...||...-.++
T Consensus 743 ~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l 822 (876)
T 1qgr_A 743 SQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLI 822 (876)
T ss_dssp HTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 85558999758899999999999999999999974575555543889999999999999998658888889999999999
Q ss_pred HHHHCCCCC-CCEEC
Q ss_conf 542035657-32004
Q 000827 1231 NSLYIGAQD-ALVAA 1244 (1265)
Q Consensus 1231 ~~~~~~~~d-~~~~~ 1244 (1265)
+.+....+. .+.||
T Consensus 823 ~~l~~~~~~~~~~~~ 837 (876)
T 1qgr_A 823 GDLCTAFGKDVLKLV 837 (876)
T ss_dssp HHHHHHHCTHHHHHH
T ss_pred HHHHHHHCCHHHHHH
T ss_conf 999988284889999
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=309.02 Aligned_cols=550 Identities=11% Similarity=0.089 Sum_probs=268.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-----
Q ss_conf 79999998707842687989999999999990777620079-899999840389873439999999999999947-----
Q 000827 604 LLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLR-SLVEIIEHGLNDENQKVRTITALSLAALAEAAA----- 677 (1265)
Q Consensus 604 Llp~L~~~~~s~~s~~~R~aai~~l~~i~~~~g~~i~p~L~-~ll~~i~~~l~De~~~VR~~A~~al~~La~~~~----- 677 (1265)
+++.+...+.+.+ +..|..++.++..++...+..+.+|+. .+++.+...+.+.+..||..++..+..+++...
T Consensus 218 il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~ 296 (876)
T 1qgr_A 218 IMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 296 (876)
T ss_dssp HHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999998717998-899999999999999986999998877899999999963873499999999999998878767665
Q ss_pred -------------C---CCHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------------5---56021588699999732035-------538999999999665111168654433899999999
Q 000827 678 -------------P---YGIESFDSVLKPLWKGIRSH-------RGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILI 734 (1265)
Q Consensus 678 -------------p---~~~~~~~~iL~~L~~~l~~~-------~~kala~~l~a~~~liP~l~~~~~~~~~~~ii~~L~ 734 (1265)
+ +...++..+++.+++.+... ......+...+++.+...+. ......+++.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~----~~~~~~~l~~l~ 372 (876)
T 1qgr_A 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE----DDIVPHVLPFIK 372 (876)
T ss_dssp HHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG----GGGHHHHHHHHH
T ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHH
T ss_conf 1001124777542018999998988707999875313344454521799999999999998775----866999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 97179999999999999999630157760345320159999999997533438889999999999998408044699999
Q 000827 735 REFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIV 814 (1265)
Q Consensus 735 ~~l~~~de~~r~~al~~l~~~~~~~g~~~~~i~~~ilp~l~~~~~~~~~~~d~~~~~~li~~~~~ia~~~g~~~ii~~i~ 814 (1265)
..+.+++..+|..++.++..++...+ +..+ .+++ ..+++.+.
T Consensus 373 ~~l~~~~~~~r~~a~~~l~~i~~~~~--~~~~-----~~~~-------------------------------~~~l~~l~ 414 (876)
T 1qgr_A 373 EHIKNPDWRYRDAAVMAFGCILEGPE--PSQL-----KPLV-------------------------------IQAMPTLI 414 (876)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSC--HHHH-----HHHH-------------------------------HHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCC--HHHH-----HHHH-------------------------------HHHHHHHH
T ss_conf 88469982899999999999974887--7789-----9999-------------------------------99999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-----------
Q ss_conf 871489955899999999999996187871167899989999998400466227989998999999830-----------
Q 000827 815 EDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLG----------- 883 (1265)
Q Consensus 815 ~~l~d~~~~~R~~a~~~l~~ii~~lg~~~~~~~~~~~li~~ll~~l~e~~~ed~~~al~aLg~I~~~lg----------- 883 (1265)
..+.|.+..+|..++.++.+++...+...........+++.++..+.+. ...+..++.+++.++..++
T Consensus 415 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~ 493 (876)
T 1qgr_A 415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEE 493 (876)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCC
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9867997899999999999999857201144777999999999987588-889999999999999985020123444455
Q ss_pred ---HHHHCHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-----------CC
Q ss_conf ---301301777899999971399---9999999999999999998221058899999999997527-----------99
Q 000827 884 ---QRVKPYLPQICGTIKWRLNNK---SAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLG-----------EE 946 (1265)
Q Consensus 884 ---~~~~p~Lpqiip~Ll~~L~d~---~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~e~L~-----------d~ 946 (1265)
..+.||++++++.|+..+.+. +..+|..+..+++.++...+... ..++..+.+.+++.+. +.
T Consensus 494 ~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 572 (876)
T 1qgr_A 494 PATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDC-YPAVQKTTLVIMERLQQVLQMESHIQSTS 572 (876)
T ss_dssp CCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHHHHHTTTTSCCSTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 54032157699999999999727674204699999999999999774311-89999999999999999998871248863
Q ss_pred C----HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHH-CCCCCCHHHHHHH
Q ss_conf 9----889999999999999980766678617747988999851898--79999999999999850-7787695889999
Q 000827 947 Y----PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRH--EKVQENCIDLVGRIADR-GAEFVPAREWMRI 1019 (1265)
Q Consensus 947 ~----~~V~~~al~aL~~iv~~~g~~~l~p~l~~Llp~Ll~~L~~~~--~~Vre~ai~~ig~Ia~~-~~~~~~~~e~~~i 1019 (1265)
+ ++++..++.++..++..+|...+.||++.+++.++..+++.+ ..+++.++.+++.|+.. +..|.++. ..+
T Consensus 573 d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~ 650 (876)
T 1qgr_A 573 DRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM--EAF 650 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHH
T ss_conf 599999999999999999999828542057899999999999985368888508999999999999876099999--999
Q ss_pred HHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHCCCC---
Q ss_conf 99999998422-199999999999999996090------9899999973035--42256979999999998640984---
Q 000827 1020 CFELLEMLKAH-KKGIRRATVNTFGYIAKAIGP------QDVLATLLNNLKV--QERQNRVCTTVAIAIVAETCSPF--- 1087 (1265)
Q Consensus 1020 l~~LL~~Lk~~-~~~iR~~a~~tlg~Ia~~iGp------~~vlp~Ll~~L~~--~e~~~R~~t~~ai~~i~e~~gp~--- 1087 (1265)
++.++..+++. ...+|..++.++|.|++.+|+ ..+++.|++.+.. .+..+|.++..+++.++..+|+.
T Consensus 651 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~ 730 (876)
T 1qgr_A 651 KPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKK 730 (876)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 99999987586508799999999999999887854645999999999974871233876399999999999970352799
Q ss_pred ---CCHHHHHHHCCCCC-----------HHHHHHHHHHHHHHHHHHCH----------HHHHHHHHHHHHHHHHHCCC--
Q ss_conf ---51899885407996-----------56999999999999999602----------22534996999999986039--
Q 000827 1088 ---TVLPALMNEYRVPE-----------LNVQNGVLKSLSFLFEYIGE----------MGKDYIYAVTPLLEDALMDR-- 1141 (1265)
Q Consensus 1088 ---~vlPaLl~~~~~~~-----------~~v~~~vl~aL~~l~~~ige----------~~~~yi~~i~plL~~~l~d~-- 1141 (1265)
.++|.|++.+.... .+++.++++++..++..++. ....|++.+++.+.....+.
T Consensus 731 ~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 810 (876)
T 1qgr_A 731 YLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDH 810 (876)
T ss_dssp GHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999985558999758899999999999999999999974575555543889999999999999998658888
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHH-HHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 946999999999999810148883258-9988776301-0026894899999999999999
Q 000827 1142 DLVHRQTAASAVKHMALGVAGLGCEDA-LVHLLNYVWP-NIFETSPHVINAVMEAIEGMRV 1200 (1265)
Q Consensus 1142 d~~~Rq~A~~~i~~lal~~~~~~~e~~-~~~~ln~i~~-~i~~~s~~v~~~~~~a~~~~~~ 1200 (1265)
+..+|+.|+.+++.++...++....+. ..+++..++. .+-++++.+|.++..+++.+..
T Consensus 811 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 811 TDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 8899999999999999882848899997048999999987546887689999999999997
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=298.74 Aligned_cols=553 Identities=18% Similarity=0.223 Sum_probs=323.8
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 42589975799999999998853198--3249888678339--9978899999999999998321211356689899999
Q 000827 463 KVKNGTPPQRKTALRQLTDKAREFGA--GPLFNRILPLLMQ--PTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVI 538 (1265)
Q Consensus 463 ~lkng~~~vR~~A~r~L~~~A~~~G~--~~~~~~lLp~l~~--~~l~d~~R~~~v~ii~~i~~~l~~~v~p~~~~Ll~~i 538 (1265)
.+++.++.+|..|+++|.......+. ...+..+++.++. ..-++..|..++..+..++...+..+.+|+..++..+
T Consensus 182 ~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l 261 (852)
T 4fdd_A 182 FFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYM 261 (852)
T ss_dssp TTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 85679789999999999999864638799889999999998717997789999999999999857798998899999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHH--------CHHHHHHHHC--------------CCC--CC------CHHHHHHHH
Q ss_conf 73204988788999999999999974--------4599997223--------------688--87------529999999
Q 000827 539 EPLLIDEDYYARVEGREIISNLSKAA--------GLATMIAAMR--------------PDI--DN------IDEYVRNTT 588 (1265)
Q Consensus 539 ~~lL~ded~~vR~~a~~il~~L~k~~--------Gl~~~i~~L~--------------~~l--~~------~d~~vR~~a 588 (1265)
..++.|++..||..+.+.+..+++.. .+..++..+. .+. ++ .+..+|+.+
T Consensus 262 ~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a 341 (852)
T 4fdd_A 262 LQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCS 341 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 98706996899999999999986036579887888988999999875786767998669844322245640111699999
Q ss_pred HHHHHHHHHHHC---HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 897999996219---34279999998707842687989999999999990777620079899999840389873439999
Q 000827 589 ARAFSVVASALG---IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTIT 665 (1265)
Q Consensus 589 a~~l~~lA~~lg---~~~Llp~L~~~~~s~~s~~~R~aai~~l~~i~~~~g~~i~p~L~~ll~~i~~~l~De~~~VR~~A 665 (1265)
+.+++.++..+| ++.++|++.+.+.+++ |..|++++.+++.|+...+..+.++++.+++.+...+.|+++.||.++
T Consensus 342 ~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~-~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a 420 (852)
T 4fdd_A 342 AAALDVLANVYRDELLPHILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSIT 420 (852)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 9999999874618789999999999855998-899999999999998635688998799999999987179988999999
Q ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 99999999994755-60215886999997320355389999999996651111686544338999999999717999999
Q 000827 666 ALSLAALAEAAAPY-GIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEM 744 (1265)
Q Consensus 666 ~~al~~La~~~~p~-~~~~~~~iL~~L~~~l~~~~~kala~~l~a~~~liP~l~~~~~~~~~~~ii~~L~~~l~~~de~~ 744 (1265)
+++++.+++.+.+. ...++..+++.+++.+.+...++....+.+++.++..+... ...|.+.+++.|...+++.+...
T Consensus 421 ~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~-l~~~l~~ll~~L~~~l~~~~~~~ 499 (852)
T 4fdd_A 421 CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKN 499 (852)
T ss_dssp HHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCHHH
T ss_conf 99999999886110478999999999999985898889999999999999973676-67679999999999998837479
Q ss_pred HHHHHHHHHHHHHCCCC---CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 99999999996301577---603453201599999999975334388899999999999984080446999998714899
Q 000827 745 KKIVLKVVKQCVSTEGV---EADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDES 821 (1265)
Q Consensus 745 r~~al~~l~~~~~~~g~---~~~~i~~~ilp~l~~~~~~~~~~~d~~~~~~li~~~~~ia~~~g~~~ii~~i~~~l~d~~ 821 (1265)
...+++++..++...+. .+.|+ +.++|.+++.+ ......+ +..+.+++++..++..+|. .+
T Consensus 500 ~~~~~~ai~~l~~~~~~~~~~~~~~-~~l~p~l~~~~-~~l~d~~-~~~~~~~~~l~~i~~~~g~-------------~~ 563 (852)
T 4fdd_A 500 LLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQKW-NMLKDED-KDLFPLLECLSSVATALQS-------------GF 563 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGGCCHHHH-HHHHHHHHHHH-HHSCTTC-TTHHHHHHHHHHHHHHHGG-------------GG
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHH-HHCCCCC-HHHHHHHHHHHHHHHHHHH-------------HH
T ss_conf 9999999999999742431367899-99889999998-7333046-9999999999999999748-------------67
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-----HHHCCCCHHHHHHHHHHHHHHHHCHHHHCHH--HHHH
Q ss_conf 55899999999999996187871167899989999998-----4004662279899989999998303013017--7789
Q 000827 822 EPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYA-----FQEQTSDDANVMLNGFGAVVNSLGQRVKPYL--PQIC 894 (1265)
Q Consensus 822 ~~~R~~a~~~l~~ii~~lg~~~~~~~~~~~li~~ll~~-----l~e~~~ed~~~al~aLg~I~~~lg~~~~p~L--pqii 894 (1265)
.++....+..+..++... +....... +.+...+.+..++.+++.++..+|.++.+|+ ++++
T Consensus 564 ~~~~~~i~~~~~~~l~~~------------l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~ 631 (852)
T 4fdd_A 564 LPYCEPVYQRCVNLVQKT------------LAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNIL 631 (852)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 988999999999999999------------99998753388666887611999999999789998747699883677189
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 99999713999999999999999999998221058899999999997527999889999999999999980766678617
Q 000827 895 GTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPI 974 (1265)
Q Consensus 895 p~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~e~L~d~~~~V~~~al~aL~~iv~~~g~~~l~p~l 974 (1265)
+.++.+++|+++.||+.++.+++.++..++..+ ..+++.+++.+...+++++++|+.+++++++.++..+|. .+.||+
T Consensus 632 ~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~-~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~-~~~p~~ 709 (852)
T 4fdd_A 632 TLMYQCMQDKMPEVRQSSFALLGDLTKACFQHV-KPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI-EMQPYI 709 (852)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGT-GGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG-GGGGGT
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_conf 999998389984499999999999999816888-987999999999876942068999999999999997117-678789
Q ss_pred HHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHH
Q ss_conf 74798899985189--87999999999999985077876958899999999999842-2199999999999999996
Q 000827 975 KDLLPRLTPILKNR--HEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKA-HKKGIRRATVNTFGYIAKA 1048 (1265)
Q Consensus 975 ~~Llp~Ll~~L~~~--~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~-~~~~iR~~a~~tlg~Ia~~ 1048 (1265)
..+++.|+++|+++ +..++++++.++|.++..+++++.++ +.+++..++..|.. .....|..++++|+.+...
T Consensus 710 ~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~-l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~ 785 (852)
T 4fdd_A 710 PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPM-LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISV 785 (852)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGG-HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCC-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999857998872077889999999998688976755-8999999999865366607999999999999986
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=283.35 Aligned_cols=556 Identities=15% Similarity=0.155 Sum_probs=339.2
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 2368887529999999897999996219----342799999987078426879899999999999907776200798999
Q 000827 573 MRPDIDNIDEYVRNTTARAFSVVASALG----IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVE 648 (1265)
Q Consensus 573 L~~~l~~~d~~vR~~aa~~l~~lA~~lg----~~~Llp~L~~~~~s~~s~~~R~aai~~l~~i~~~~g~~i~p~L~~ll~ 648 (1265)
+...+.+++..+|..+++.++.++..+| +++++|+|...+ +++ +..|..+..+++.++...+. ..+...+++
T Consensus 15 l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~-~~vr~~~~~~L~~~~~~~~~--~~~~~~ll~ 90 (588)
T 1b3u_A 15 LIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDE-DEVLLALAEQLGTFTTLVGG--PEYVHCLLP 90 (588)
T ss_dssp HHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCC-HHHHHHHHHHHTTCSGGGTS--GGGGGGGHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHC-CCC-HHHHHHHHHHHHHHHHCCCC--HHHHHHHHH
T ss_conf 99985062199999999719999998697989998998898755-785-89999999999778760585--989999899
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9984038987343999999999999994755602158-869999973203553899999999966511116865443389
Q 000827 649 IIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFD-SVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTK 727 (1265)
Q Consensus 649 ~i~~~l~De~~~VR~~A~~al~~La~~~~p~~~~~~~-~iL~~L~~~l~~~~~kala~~l~a~~~liP~l~~~~~~~~~~ 727 (1265)
.+...+.|++..||..++.+++.++....+. .+. .+++.+.+...+............++.+.+.+.. ...+
T Consensus 91 ~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~----~~~~ 163 (588)
T 1b3u_A 91 PLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS----AVKA 163 (588)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH----HHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCH----HHHH
T ss_conf 9999874760799999999999999979999---99999999999985077717999999999999985699----9999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 99999999717999999999999999963015776034532015999999999753343888999999999999840804
Q 000827 728 EVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVA 807 (1265)
Q Consensus 728 ~ii~~L~~~l~~~de~~r~~al~~l~~~~~~~g~~~~~i~~~ilp~l~~~~~~~~~~~d~~~~~~li~~~~~ia~~~g~~ 807 (1265)
.+++.+...+++++..+|..+++++..++...+ .+.....
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~--~~~~~~~-------------------------------------- 203 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE--LDNVKSE-------------------------------------- 203 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC--HHHHHHT--------------------------------------
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC--HHHHHHH--------------------------------------
T ss_conf 999999998489978899999998999999816--7767999--------------------------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 46999998714899558999999999999961878711678999899999984004662279899989999998303013
Q 000827 808 DIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVK 887 (1265)
Q Consensus 808 ~ii~~i~~~l~d~~~~~R~~a~~~l~~ii~~lg~~~~~~~~~~~li~~ll~~l~e~~~ed~~~al~aLg~I~~~lg~~~~ 887 (1265)
+++.+...+.|+++.+|..++.++..++...+.. .....+++.+...+.+.....+..++.+|+.++..++...
T Consensus 204 -l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~- 277 (588)
T 1b3u_A 204 -IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE----DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI- 277 (588)
T ss_dssp -HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH----HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH-
T ss_pred -HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC-
T ss_conf -9999998824992889998999999999857988----8887899999998069977899999999999999819521-
Q ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 01777899999971399999999999999999999822105-88999999999975279998899999999999999807
Q 000827 888 PYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHE-EQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 966 (1265)
Q Consensus 888 p~Lpqiip~Ll~~L~d~~~~VR~~A~~~lg~La~~l~~~~~-~~ll~~L~~~L~e~L~d~~~~V~~~al~aL~~iv~~~g 966 (1265)
+.+++++.++..++|.++.||..|+.+++.++..++.... ..+++.+.+.+...+.|.++.|+..++.+|+.++..+|
T Consensus 278 -~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~ 356 (588)
T 1b3u_A 278 -TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG 356 (588)
T ss_dssp -HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC
T ss_pred -CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf -0558999999985899589999999879999997274443657999999999998619988999999999999988862
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 6667861774798899985189879999999999999850-778769588999999999998422199999999999999
Q 000827 967 MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR-GAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYI 1045 (1265)
Q Consensus 967 ~~~l~p~l~~Llp~Ll~~L~~~~~~Vre~ai~~ig~Ia~~-~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~I 1045 (1265)
... ..+.++|.+...+++.+..||.+++.+++.+... +.+.. ...+++.+...+++....+|..++.+++.+
T Consensus 357 ~~~---~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l 429 (588)
T 1b3u_A 357 KDN---TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL----SQSLLPAIVELAEDAKWRVRLAIIEYMPLL 429 (588)
T ss_dssp HHH---HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHH----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 767---8888999999983798368999999989999975498989----888899999983599813999999999999
Q ss_pred HHHHCCH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC----CCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9960909----89999997303542256979999999998640984----518998854079965699999999999999
Q 000827 1046 AKAIGPQ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF----TVLPALMNEYRVPELNVQNGVLKSLSFLFE 1117 (1265)
Q Consensus 1046 a~~iGp~----~vlp~Ll~~L~~~e~~~R~~t~~ai~~i~e~~gp~----~vlPaLl~~~~~~~~~v~~~vl~aL~~l~~ 1117 (1265)
+..+|+. .++|.++..+++.+..+|..++.+++.+++.+|+. .++|.|......++..++..++.+++.+.+
T Consensus 430 ~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~ 509 (588)
T 1b3u_A 430 AGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE 509 (588)
T ss_dssp HHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 98809898999999999988259819999999999999999968445788899999998318987999999999999997
Q ss_pred HHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 96022253499699999998603994699999999999981014888325899887763010026894899999999999
Q 000827 1118 YIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEG 1197 (1265)
Q Consensus 1118 ~ige~~~~yi~~i~plL~~~l~d~d~~~Rq~A~~~i~~lal~~~~~~~e~~~~~~ln~i~~~i~~~s~~v~~~~~~a~~~ 1197 (1265)
.++.. .|...++|.|...+.|.+..+|..++.+++.++.... .+.....++..+..-+-+++++||..+.++++.
T Consensus 510 ~~~~~--~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~---~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 510 VCGQD--ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD---NSTLQSEVKPILEKLTQDQDVDVKYFAQEALTV 584 (588)
T ss_dssp HHHHH--HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC---HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HCCHH--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 66989--9999999999866789986279999999999999865---364599999999987479966699999999997
Q ss_pred H
Q ss_conf 9
Q 000827 1198 M 1198 (1265)
Q Consensus 1198 ~ 1198 (1265)
+
T Consensus 585 l 585 (588)
T 1b3u_A 585 L 585 (588)
T ss_dssp T
T ss_pred H
T ss_conf 6
Done!