AmiGO: BLAST Results


BLAST match view associations BLAST with rpc1 rpc1 rpc1 RNA polymerase III, largest subunit	gene from Dictyostelium discoideum	0.
BLAST match view associations BLAST with POLR3A POLR3A POLR3A DNA-directed RNA polymerase III subunit RPC1	protein from Homo sapiens	8.3e-316
BLAST match view associations BLAST with POLR3A POLR3A POLR3A DNA-directed RNA polymerase	protein from Sus scrofa	5.8e-315
BLAST match view associations BLAST with POLR3A POLR3A POLR3A DNA-directed RNA polymerase	protein from Gallus gallus	1.9e-314
BLAST match view associations BLAST with POLR3A POLR3A POLR3A DNA-directed RNA polymerase III subunit RPC1	protein from Gallus gallus	3.9e-314
BLAST match view associations BLAST with POLR3A POLR3A POLR3A DNA-directed RNA polymerase III subunit RPC1	protein from Bos taurus	4.1e-314
BLAST match view associations BLAST with POLR3A POLR3A POLR3A DNA-directed RNA polymerase	protein from Canis lupus familiaris	5.2e-314
BLAST match view associations BLAST with polr3a polr3a polr3a polymerase (RNA) III (DNA directed) polypeptide A	gene_product from Danio rerio	1.5e-312
BLAST match view associations BLAST with RPO31 RPO31 RPO31 RNA polymerase III largest subunit C160	gene from Saccharomyces cerevisiae	3.6e-306
BLAST match view associations BLAST with POLR3A POLR3A POLR3A DNA-directed RNA polymerase	protein from Canis lupus familiaris	1.6e-301
BLAST match view associations BLAST with orf19.3103 orf19.3103 orf19.3103	gene_product from Candida albicans	1.4e-300
BLAST match view associations BLAST with rpc-1 rpc-1 rpc-1	gene from Caenorhabditis elegans	5.3e-278
BLAST match view associations BLAST with PF13_0150 PF13_0150 PF13_0150 DNA-directed RNA polymerase 3 largest subunit	gene from Plasmodium falciparum	8.9e-266
BLAST match view associations BLAST with PF13_0150 PF13_0150 PF13_0150 DNA-directed RNA polymerase	protein from Plasmodium falciparum 3D7	8.9e-266
BLAST match view associations BLAST with CG17209 CG17209 CG17209	protein from Drosophila melanogaster	8.8e-237
BLAST match view associations BLAST with POLR2A POLR2A POLR2A DNA-directed RNA polymerase	protein from Canis lupus familiaris	1.2e-180
BLAST match view associations BLAST with POLR2A POLR2A POLR2A DNA-directed RNA polymerase	protein from Bos taurus	3.7e-178
BLAST match view associations BLAST with POLR2A POLR2A POLR2A DNA-directed RNA polymerase	protein from Canis lupus familiaris	7.5e-178
BLAST match view associations BLAST with Polr2a Polr2a Polr2a polymerase (RNA) II (DNA directed) polypeptide A	gene from Rattus norvegicus	7.6e-178
BLAST match view associations BLAST with POLR2A POLR2A POLR2A DNA-directed RNA polymerase II subunit RPB1	protein from Homo sapiens	9.8e-178
BLAST match view associations BLAST with Polr2a Polr2a Polr2a polymerase (RNA) II (DNA directed) polypeptide A	protein from Mus musculus	9.8e-178
BLAST match view associations BLAST with polr2a polr2a polr2a polymerase (RNA) II (DNA directed) polypeptide A	gene_product from Danio rerio	2.5e-177
BLAST match view associations BLAST with RpII215 RpII215 RpII215 RNA polymerase II 215kD subunit	protein from Drosophila melanogaster	2.2e-175
BLAST match view associations BLAST with RPO21 RPO21 RPO21	gene_product from Candida albicans	2.2e-174
BLAST match view associations BLAST with RPO21 RPO21 RPO21 DNA-directed RNA polymerase	protein from Candida albicans SC5314	2.2e-174
BLAST match view associations BLAST with ama-1 ama-1 ama-1	gene from Caenorhabditis elegans	7.9e-174
BLAST match view associations BLAST with ama-1 ama-1 ama-1 DNA-directed RNA polymerase II subunit RPB1	protein from Caenorhabditis elegans	7.9e-174
BLAST match view associations BLAST with MGG_04652 MGG_04652 MGG_04652 DNA-directed RNA polymerase	protein from Magnaporthe oryzae 70-15	3.8e-168
BLAST match view associations BLAST with RPO21 RPO21 RPO21 RNA polymerase II largest subunit B220	gene from Saccharomyces cerevisiae	7.4e-168
BLAST match view associations BLAST with POLR2A POLR2A POLR2A DNA-directed RNA polymerase	protein from Sus scrofa	1.1e-133
BLAST match view associations BLAST with rpb1 rpb1 rpb1 RNA polymerase II core subunit	gene from Dictyostelium discoideum	1.0e-121
BLAST match view associations BLAST with POLR1A POLR1A POLR1A DNA-directed RNA polymerase	protein from Homo sapiens	2.9e-114
BLAST match view associations BLAST with RPA190 RPA190 RPA190	gene_product from Candida albicans	3.6e-114
BLAST match view associations BLAST with POLR1A POLR1A POLR1A DNA-directed RNA polymerase I subunit RPA1	protein from Homo sapiens	3.8e-114
BLAST match view associations BLAST with POLR1A POLR1A POLR1A DNA-directed RNA polymerase	protein from Sus scrofa	4.4e-114
BLAST match view associations BLAST with Polr1a Polr1a Polr1a polymerase (RNA) I polypeptide A	gene from Rattus norvegicus	7.3e-114
BLAST match view associations BLAST with Polr1a Polr1a Polr1a polymerase (RNA) I polypeptide A	protein from Mus musculus	3.3e-113
BLAST match view associations BLAST with POLR1A POLR1A POLR1A DNA-directed RNA polymerase	protein from Canis lupus familiaris	6.8e-113
BLAST match view associations BLAST with POLR1A POLR1A POLR1A DNA-directed RNA polymerase	protein from Canis lupus familiaris	7.7e-113
BLAST match view associations BLAST with POLR1A POLR1A POLR1A DNA-directed RNA polymerase	protein from Bos taurus	2.4e-112
BLAST match view associations BLAST with RPA190 RPA190 RPA190 RNA polymerase I largest subunit A190	gene from Saccharomyces cerevisiae	5.0e-111
BLAST match view associations BLAST with Polr3a Polr3a Polr3a polymerase (RNA) III (DNA directed) polypeptide A	gene from Rattus norvegicus	7.2e-107
BLAST match view associations BLAST with NRPA1 NRPA1 NRPA1 AT3G57660	protein from Arabidopsis thaliana	2.7e-105
BLAST match view associations BLAST with RpI1 RpI1 RpI1 RNA polymerase I subunit	protein from Drosophila melanogaster	7.1e-104
BLAST match view associations BLAST with polr1a polr1a polr1a polymerase (RNA) I polypeptide A	gene_product from Danio rerio	3.6e-97
BLAST match view associations BLAST with rpa1 rpa1 rpa1 RNA polymerase I, largest subunit	gene from Dictyostelium discoideum	4.1e-93
BLAST match view associations BLAST with rpoa-1 rpoa-1 rpoa-1	gene from Caenorhabditis elegans	2.4e-91
BLAST match view associations BLAST with MGG_01158 MGG_01158 MGG_01158 DNA-directed RNA polymerase	protein from Magnaporthe oryzae 70-15	7.7e-82
BLAST match view associations BLAST with POLR2A POLR2A POLR2A DNA-directed RNA polymerase	protein from Homo sapiens	2.2e-72
BLAST match view associations BLAST with BA_0103 BA_0103 BA_0103 DNA-directed RNA polymerase, beta' subunit	protein from Bacillus anthracis str. Ames	1.2e-63
BLAST match view associations BLAST with CHY_2317 CHY_2317 CHY_2317 DNA-directed RNA polymerase, beta' subunit	protein from Carboxydothermus hydrogenoformans Z-2901	2.0e-62
BLAST match view associations BLAST with rpoC rpoC rpoC DNA-directed RNA polymerase subunit beta'	protein from Bacillus subtilis subsp. subtilis str. 168	3.3e-62
BLAST match view associations BLAST with SO_0225 SO_0225 SO_0225 DNA-directed RNA polymerase, beta subunit	protein from Shewanella oneidensis MR-1	4.3e-55
BLAST match view associations BLAST with SPO_3507 SPO_3507 SPO_3507 DNA-directed RNA polymerase, beta' subunit	protein from Ruegeria pomeroyi DSS-3	8.3e-54
BLAST match view associations BLAST with rpoC rpoC rpoC RNA polymerase, beta' subunit	protein from Escherichia coli K-12	4.0e-53
BLAST match view associations BLAST with rpoC rpoC rpoC DNA-directed RNA polymerase subunit beta'	protein from Mycobacterium tuberculosis	6.0e-53
BLAST match view associations BLAST with POLR1A POLR1A POLR1A DNA-directed RNA polymerase	protein from Gallus gallus	6.5e-53
BLAST match view associations BLAST with CJE_0529 CJE_0529 CJE_0529 DNA-directed RNA polymerase, beta' subunit	protein from Campylobacter jejuni RM1221	1.1e-52
BLAST match view associations BLAST with CPS_4768 CPS_4768 CPS_4768 DNA-directed RNA polymerase, beta' subunit	protein from Colwellia psychrerythraea 34H	1.5e-52
BLAST match view associations BLAST with rpoC rpoC rpoC DNA-directed RNA polymerase subunit beta'	protein from Vibrio cholerae O1 biovar El Tor str. N16961	2.7e-51
BLAST match view associations BLAST with VC_0329 VC_0329 VC_0329 DNA-directed RNA polymerase, beta' subunit	protein from Vibrio cholerae O1 biovar El Tor	2.7e-51
BLAST match view associations BLAST with CBU_0232 CBU_0232 CBU_0232 DNA-directed RNA polymerase beta' subunit	protein from Coxiella burnetii RSA 493	1.9e-50
BLAST match view associations BLAST with H9L2Z3 H9L2Z3 H9L2Z3 DNA-directed RNA polymerase	protein from Gallus gallus	7.9e-50
BLAST match view associations BLAST with H9L2Z2 H9L2Z2 H9L2Z2 DNA-directed RNA polymerase	protein from Gallus gallus	2.3e-47
BLAST match view associations BLAST with H9L2Z0 H9L2Z0 H9L2Z0 DNA-directed RNA polymerase	protein from Gallus gallus	2.4e-47
BLAST match view associations BLAST with NSE_0677 NSE_0677 NSE_0677 DNA-directed RNA polymerase, beta' subunit	protein from Neorickettsia sennetsu str. Miyayama	1.4e-46
BLAST match view associations BLAST with H9L2Z1 H9L2Z1 H9L2Z1 DNA-directed RNA polymerase	protein from Gallus gallus	4.4e-46
BLAST match view associations BLAST with ECH_0951 ECH_0951 ECH_0951 DNA-directed RNA polymerase, beta' subunit	protein from Ehrlichia chaffeensis str. Arkansas	3.9e-45
BLAST match view associations BLAST with APH_1023 APH_1023 APH_1023 DNA-directed RNA polymerase, beta' subunit	protein from Anaplasma phagocytophilum HZ	1.0e-44
BLAST match view associations BLAST with DET_0604 DET_0604 DET_0604 DNA-directed RNA polymerase, beta' subunit	protein from Dehalococcoides ethenogenes 195	3.3e-43
BLAST match view associations BLAST with POLR1A POLR1A POLR1A Uncharacterized protein	protein from Gallus gallus	1.3e-37
BLAST match view associations BLAST with NRPD1A NRPD1A NRPD1A AT1G63020	protein from Arabidopsis thaliana	3.5e-36
BLAST match view associations BLAST with NRPD1B NRPD1B NRPD1B AT2G40030	protein from Arabidopsis thaliana	3.1e-30
BLAST match view associations BLAST with rpoC1 rpoC1 rpoC1 DNA-directed RNA polymerase subunit beta'	protein from Oryza sativa	5.6e-25
BLAST match view associations BLAST with rpoC1 rpoC1 rpoC1 DNA-directed RNA polymerase subunit beta'	protein from Oryza sativa Indica Group	5.6e-25
BLAST match view associations BLAST with rpoC1 rpoC1 rpoC1 DNA-directed RNA polymerase subunit beta'	protein from Oryza sativa Japonica Group	5.6e-25
BLAST match view associations BLAST with rpoC1 rpoC1 rpoC1 DNA-directed RNA polymerase subunit beta'	protein from Oryza nivara	5.6e-25
BLAST match view associations BLAST with rpoC2 rpoC2 rpoC2 DNA-directed RNA polymerase subunit beta''	protein from Oryza sativa	6.0e-16
BLAST match view associations BLAST with rpoC2 rpoC2 rpoC2 DNA-directed RNA polymerase subunit beta''	protein from Oryza sativa Indica Group	6.0e-16
BLAST match view associations BLAST with rpoC2 rpoC2 rpoC2 DNA-directed RNA polymerase subunit beta''	protein from Oryza sativa Japonica Group	6.0e-16
BLAST match view associations BLAST with rpoC2 rpoC2 rpoC2 DNA-directed RNA polymerase subunit beta''	protein from Oryza nivara	6.0e-16
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  000829
        (1265 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

DICTYBASE|DDB_G0277199 - symbol:rpc1 "RNA polymerase III,...  2302  0.        2
UNIPROTKB|O14802 - symbol:POLR3A "DNA-directed RNA polyme...  3016  8.3e-316  2
UNIPROTKB|F1S2E6 - symbol:POLR3A "DNA-directed RNA polyme...  3008  5.8e-315  2
UNIPROTKB|F1NIK7 - symbol:POLR3A "DNA-directed RNA polyme...  3016  1.9e-314  1
UNIPROTKB|Q5ZL98 - symbol:POLR3A "DNA-directed RNA polyme...  3013  3.9e-314  1
UNIPROTKB|A4IF62 - symbol:POLR3A "DNA-directed RNA polyme...  3000  4.1e-314  2
UNIPROTKB|J9P629 - symbol:POLR3A "DNA-directed RNA polyme...  2999  5.2e-314  2
ZFIN|ZDB-GENE-050208-103 - symbol:polr3a "polymerase (RNA...  2998  1.5e-312  1
SGD|S000005642 - symbol:RPO31 "RNA polymerase III largest...  1988  3.6e-306  4
UNIPROTKB|E9PTB6 - symbol:Polr3a "DNA-directed RNA polyme...  2920  1.2e-305  2
UNIPROTKB|E2QXD8 - symbol:POLR3A "DNA-directed RNA polyme...  2166  1.6e-301  3
CGD|CAL0002215 - symbol:orf19.3103 species:5476 "Candida ...  2049  1.4e-300  2
POMBASE|SPBC651.08c - symbol:rpc1 "DNA-directed RNA polym...  2863  3.0e-298  1
WB|WBGene00004411 - symbol:rpc-1 species:6239 "Caenorhabd...  2672  5.3e-278  1
GENEDB_PFALCIPARUM|PF13_0150 - symbol:PF13_0150 "DNA-dire...  1439  8.9e-266  5
UNIPROTKB|Q8IE49 - symbol:PF13_0150 "DNA-directed RNA pol...  1439  8.9e-266  5
FB|FBgn0030687 - symbol:CG17209 species:7227 "Drosophila ...  2283  8.8e-237  1
ASPGD|ASPL0000047704 - symbol:AN10316 species:162425 "Eme...  2024  2.4e-209  1
UNIPROTKB|J9NW09 - symbol:POLR2A "DNA-directed RNA polyme...  1287  1.2e-180  4
UNIPROTKB|G3MZY8 - symbol:POLR2A "DNA-directed RNA polyme...  1286  3.7e-178  4
UNIPROTKB|F1PGS0 - symbol:POLR2A "DNA-directed RNA polyme...  1287  7.5e-178  4
RGD|1587326 - symbol:Polr2a "polymerase (RNA) II (DNA dir...  1287  7.6e-178  4
UNIPROTKB|P24928 - symbol:POLR2A "DNA-directed RNA polyme...  1286  9.8e-178  4
MGI|MGI:98086 - symbol:Polr2a "polymerase (RNA) II (DNA d...  1286  9.8e-178  4
ZFIN|ZDB-GENE-041008-78 - symbol:polr2a "polymerase (RNA)...  1285  2.5e-177  4
POMBASE|SPBC28F2.12 - symbol:rpb1 "RNA polymerase II larg...   787  1.9e-175  4
FB|FBgn0003277 - symbol:RpII215 "RNA polymerase II 215kD ...  1251  2.2e-175  4
CGD|CAL0000919 - symbol:RPO21 species:5476 "Candida albic...   783  2.2e-174  4
UNIPROTKB|Q5ACI7 - symbol:RPO21 "DNA-directed RNA polymer...   783  2.2e-174  4
WB|WBGene00000123 - symbol:ama-1 species:6239 "Caenorhabd...  1276  7.9e-174  3
UNIPROTKB|P16356 - symbol:ama-1 "DNA-directed RNA polymer...  1276  7.9e-174  3
ASPGD|ASPL0000054301 - symbol:AN0809 species:162425 "Emer...   779  1.4e-172  4
UNIPROTKB|G4MT89 - symbol:MGG_04652 "DNA-directed RNA pol...   785  3.8e-168  4
SGD|S000002299 - symbol:RPO21 "RNA polymerase II largest ...   770  7.4e-168  4
UNIPROTKB|I3LJR4 - symbol:POLR2A "DNA-directed RNA polyme...  1286  1.1e-133  2
DICTYBASE|DDB_G0279193 - symbol:rpb1 "RNA polymerase II c...   821  1.0e-121  4
POMBASE|SPBC4C3.05c - symbol:nuc1 "DNA-directed RNA polym...   833  2.2e-116  3
UNIPROTKB|B9ZVN9 - symbol:POLR1A "DNA-directed RNA polyme...   586  2.9e-114  4
CGD|CAL0001661 - symbol:RPA190 species:5476 "Candida albi...   577  3.6e-114  3
UNIPROTKB|O95602 - symbol:POLR1A "DNA-directed RNA polyme...   586  3.8e-114  4
UNIPROTKB|F1SVC3 - symbol:POLR1A "DNA-directed RNA polyme...   579  4.4e-114  4
RGD|620824 - symbol:Polr1a "polymerase (RNA) I polypeptid...   578  7.3e-114  5
UNIPROTKB|G3V7B7 - symbol:Polr1a "DNA-directed RNA polyme...   578  7.3e-114  5
MGI|MGI:1096397 - symbol:Polr1a "polymerase (RNA) I polyp...   575  3.3e-113  5
UNIPROTKB|J9P5G4 - symbol:POLR1A "DNA-directed RNA polyme...   572  6.8e-113  4
UNIPROTKB|E2R0G4 - symbol:POLR1A "DNA-directed RNA polyme...   572  7.7e-113  4
UNIPROTKB|E1BIX2 - symbol:POLR1A "DNA-directed RNA polyme...   568  2.4e-112  4
SGD|S000005868 - symbol:RPA190 "RNA polymerase I largest ...   542  5.0e-111  3
RGD|1305574 - symbol:Polr3a "polymerase (RNA) III (DNA di...  1057  7.2e-107  1
TAIR|locus:2076661 - symbol:NRPA1 "nuclear RNA polymerase...   342  2.7e-105  5
FB|FBgn0019938 - symbol:RpI1 "RNA polymerase I subunit" s...   565  7.1e-104  6
ZFIN|ZDB-GENE-030131-5286 - symbol:polr1a "polymerase (RN...   717  3.6e-97   4
DICTYBASE|DDB_G0275759 - symbol:rpa1 "RNA polymerase I, l...   818  4.1e-93   2
WB|WBGene00012999 - symbol:rpoa-1 species:6239 "Caenorhab...   581  2.4e-91   4
UNIPROTKB|G4NBX7 - symbol:MGG_01158 "DNA-directed RNA pol...   767  7.7e-82   2
UNIPROTKB|Q6NX41 - symbol:POLR2A "DNA-directed RNA polyme...   722  2.2e-72   2
TIGR_CMR|BA_0103 - symbol:BA_0103 "DNA-directed RNA polym...   255  1.2e-63   6
TIGR_CMR|CHY_2317 - symbol:CHY_2317 "DNA-directed RNA pol...   225  2.0e-62   6
UNIPROTKB|P37871 - symbol:rpoC "DNA-directed RNA polymera...   255  3.3e-62   5
UNIPROTKB|F1LQN7 - symbol:Polr1a "DNA-directed RNA polyme...   578  1.2e-59   3
TIGR_CMR|SO_0225 - symbol:SO_0225 "DNA-directed RNA polym...   207  4.3e-55   7
TIGR_CMR|SPO_3507 - symbol:SPO_3507 "DNA-directed RNA pol...   226  8.3e-54   8
UNIPROTKB|P0A8T7 - symbol:rpoC "RNA polymerase, beta' sub...   209  4.0e-53   5
UNIPROTKB|P0A674 - symbol:rpoC "DNA-directed RNA polymera...   201  6.0e-53   5
UNIPROTKB|F1NJE0 - symbol:POLR1A "DNA-directed RNA polyme...   330  6.5e-53   4
TIGR_CMR|CJE_0529 - symbol:CJE_0529 "DNA-directed RNA pol...   213  1.1e-52   9
TIGR_CMR|CPS_4768 - symbol:CPS_4768 "DNA-directed RNA pol...   210  1.5e-52   6
UNIPROTKB|Q9KV29 - symbol:rpoC "DNA-directed RNA polymera...   211  2.7e-51   5
TIGR_CMR|VC_0329 - symbol:VC_0329 "DNA-directed RNA polym...   211  2.7e-51   5
TIGR_CMR|CBU_0232 - symbol:CBU_0232 "DNA-directed RNA pol...   206  1.9e-50   6
UNIPROTKB|H9L2Z3 - symbol:H9L2Z3 "DNA-directed RNA polyme...   504  7.9e-50   2
UNIPROTKB|H9L2Z2 - symbol:H9L2Z2 "DNA-directed RNA polyme...   481  2.3e-47   2
UNIPROTKB|H9L2Z0 - symbol:H9L2Z0 "DNA-directed RNA polyme...   475  2.4e-47   2
TIGR_CMR|NSE_0677 - symbol:NSE_0677 "DNA-directed RNA pol...   182  1.4e-46   7
UNIPROTKB|H9L2Z1 - symbol:H9L2Z1 "DNA-directed RNA polyme...   469  4.4e-46   2
TIGR_CMR|ECH_0951 - symbol:ECH_0951 "DNA-directed RNA pol...   197  3.9e-45   6
TIGR_CMR|APH_1023 - symbol:APH_1023 "DNA-directed RNA pol...   194  1.0e-44   5
TIGR_CMR|DET_0604 - symbol:DET_0604 "DNA-directed RNA pol...   213  3.3e-43   5
UNIPROTKB|E1C4T2 - symbol:POLR1A "Uncharacterized protein...   183  1.3e-37   3
TAIR|locus:2015163 - symbol:NRPD1A "nuclear RNA polymeras...   408  3.5e-36   3
TAIR|locus:2061151 - symbol:NRPD1B "nuclear RNA polymeras...   275  3.1e-30   4
UNIPROTKB|P0C504 - symbol:rpoC1 "DNA-directed RNA polymer...   198  5.6e-25   2
UNIPROTKB|P0C505 - symbol:rpoC1 "DNA-directed RNA polymer...   198  5.6e-25   2
UNIPROTKB|P0C506 - symbol:rpoC1 "DNA-directed RNA polymer...   198  5.6e-25   2
UNIPROTKB|Q6ENI3 - symbol:rpoC1 "DNA-directed RNA polymer...   198  5.6e-25   2
UNIPROTKB|P0C507 - symbol:rpoC2 "DNA-directed RNA polymer...   124  6.0e-16   4
UNIPROTKB|P0C508 - symbol:rpoC2 "DNA-directed RNA polymer...   124  6.0e-16   4
UNIPROTKB|P0C509 - symbol:rpoC2 "DNA-directed RNA polymer...   124  6.0e-16   4
UNIPROTKB|Q6ENI2 - symbol:rpoC2 "DNA-directed RNA polymer...   124  6.0e-16   4


>DICTYBASE|DDB_G0277199 [details] [associations]
            symbol:rpc1 "RNA polymerase III, largest subunit"
            species:44689 "Dictyostelium discoideum" [GO:0032549
            "ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA;ISS]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
            from RNA polymerase III promoter" evidence=ISS] [GO:0005666
            "DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0016779
            "nucleotidyltransferase activity" evidence=IEA] [GO:0016740
            "transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
            evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
            dictyBase:DDB_G0277199 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
            GenomeReviews:CM000151_GR Gene3D:2.40.40.20 InterPro:IPR009010
            EMBL:AAFI02000019 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
            KO:K03018 eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 OMA:PRRPLIF
            PANTHER:PTHR19376:SF15 RefSeq:XP_642724.1 ProteinModelPortal:Q86AQ5
            STRING:Q86AQ5 EnsemblProtists:DDB0216293 GeneID:8620917
            KEGG:ddi:DDB_G0277199 ProtClustDB:CLSZ2729139 Uniprot:Q86AQ5
        Length = 1450

 Score = 2302 (815.4 bits), Expect = 0., Sum P(2) = 0.
 Identities = 454/859 (52%), Positives = 601/859 (69%)

Query:     1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK-VT 59
             MRN KM+ L++  L+K I  +C     K  +C +CG  NGM+KK+ A   IIH++ K  T
Sbjct:   127 MRNKKMDNLQRKSLLKKIFLECR----KTKECLKCGSTNGMIKKSGA-FKIIHEKYKGKT 181

Query:    60 ESLQEFAS----AITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RP 112
             ESLQ++ +    AI +  E K+ +  A   LNP+  L LFK+++  D E++ +     RP
Sbjct:   182 ESLQDYYALYDDAIKYNPEMKSHIKKAQDDLNPLVALNLFKKISYQDIEIMNMDPVIGRP 241

Query:   113 EKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFKSL 171
             E+LI+T + VPP++IRPSV MDG S +NE+D+T +L  I+  N  ++  +  A  +   +
Sbjct:   242 ERLILTYMLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEILHINEHIRSNVDRAEMS-AIM 300

Query:   172 AGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRT 231
               W+ LQ   A YINSDV G+P  M+  + + G  QRLKGK GRFRGNLSGKRV+++GRT
Sbjct:   301 EDWDYLQASCAIYINSDVPGLPLQMKPTKAVRGLSQRLKGKTGRFRGNLSGKRVDFSGRT 360

Query:   232 VISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGT 291
             VISPDPNL I EVA+P  +A  +TYPERV+D+NIE+L++ + NGPD++PGA  I Y DG 
Sbjct:   361 VISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPGANYIIYADGV 420

Query:   292 ARVL-YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 350
              + L +G  R + A ELK G IV+RH+ DGD++LFNRQPSLH++SIM H+AR+MPWRTLR
Sbjct:   421 KKWLKFGN-REKFAAELKIGDIVERHIIDGDIMLFNRQPSLHKLSIMSHKARVMPWRTLR 479

Query:   351 FNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLT 410
             FNE VC PYNADFDGDEMN+H+PQTEEAR EA +LMGV NNL TP+NGE LVA+TQDFLT
Sbjct:   480 FNECVCTPYNADFDGDEMNIHLPQTEEARAEATILMGVTNNLITPRNGEPLVAATQDFLT 539

Query:   411 SSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHAN 470
             +S+LI+R+D FY+R  F+LMC +  D  + +DLP PAILKPVELWTGKQ+F VL+RP   
Sbjct:   540 ASYLISRRDAFYERYRFALMCTHFADANEHIDLPPPAILKPVELWTGKQIFEVLLRPSVK 599

Query:   471 MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGN 530
               V  N   + +TYS  L             MCP DG+VYFRNSEL+ G + K+ +G GN
Sbjct:   600 SHVLCNFETRSRTYSKNLY------------MCPKDGYVYFRNSELMCGSIDKSIIGGGN 647

Query:   531 KDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISE 590
             K+ L+ +L+RD+     + CM RLAKL AR++G+ GFSIGI D++P ++L  KK ++I  
Sbjct:   648 KNSLFHILMRDFSPTIAANCMTRLAKLCARFLGDQGFSIGIPDIKPAEDLDRKKREIIET 707

Query:   591 NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLI 650
              Y+ C V +K+Y  G LQL  GC   QT EA +   L++IR+D GK C+  LP  NSPLI
Sbjct:   708 AYKKCAVFLKDYESGSLQLSSGCSMEQTFEAKMNQTLSQIRDDCGKLCVNDLPNYNSPLI 767

Query:   651 MSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFY 710
             M  CGSKGS INI+QM+ CVGQQ V G R PNGF +R+ PHF   AK P +KGFV+NSFY
Sbjct:   768 MGLCGSKGSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPHFKHFAKNPKSKGFVSNSFY 827

Query:   711 SGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQ 770
             +G+  TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+KALEDLS  YD +VR++ G IVQ
Sbjct:   828 TGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRDSIGGIVQ 887

Query:   771 FLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGK 830
             F+YGDDG+DPA ME K   P++F R +M VK+T     +  + P ++ ++VE  + +   
Sbjct:   888 FIYGDDGLDPAGMEAKD-RPVDFLRAMMSVKSTRQCRNEPEMKPFEIRKLVESIIDSSKF 946

Query:   831 ESCSEAFLNSLRKFFEGQQ 849
             E+C++ F N +R FF G +
Sbjct:   947 EACTDLFKNEIRVFFNGNE 965

 Score = 941 (336.3 bits), Expect = 0., Sum P(2) = 0.
 Identities = 205/379 (54%), Positives = 253/379 (66%)

Query:   872 EEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 931
             E V ++   IT+ Q+E+F+  C  +Y   R+E GTA+GAIGAQSIGEPGTQMTLKTFHFA
Sbjct:  1067 EHVVNQIHRITKTQIELFLDICLDKYSRARIEPGTAVGAIGAQSIGEPGTQMTLKTFHFA 1126

Query:   932 GVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKS 991
             GVASMN+T GVPRIKEIIN AK ISTPIITA L C+ +  +AR+V GRIEKT LG VA  
Sbjct:  1127 GVASMNVTLGVPRIKEIINAAKNISTPIITASLNCDYDIRSARIVAGRIEKTTLGHVATH 1186

Query:   992 IKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEI 1051
             IK V+      + I +D   +    L IN+  + +SI  T  +KLK + I      KL I
Sbjct:  1187 IKEVVKRAGCYLSIKIDKNFVDSLQLEINSKTISQSIASTKGLKLKPEQITTNGDYKLRI 1246

Query:  1052 FPPVD--KSKIHFELYSLKNVLPMVIVKGIKTXXXXXXXXXXXXXXXXXXXXXXXXYRLL 1109
              PP +  +  +++ L  LKN LP VIVKGI T                        Y+LL
Sbjct:  1247 VPPANIREGSLYY-LQFLKNNLPAVIVKGIPTVNRVVISKVDEKQER---------YQLL 1296

Query:  1110 VEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRH 1169
             VEG  L+AVM   GI G  T SNHI E + TLGIE AR  I+ EI+  M +HGMSID RH
Sbjct:  1297 VEGYDLRAVMATPGIKGTHTTSNHIMECENTLGIETARNTIMSEIDMIMTSHGMSIDIRH 1356

Query:  1170 MMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSEC 1229
             +MLLADLM+F+GE+LGITRFGI KM +SVLMLASFEKT DHLF+A+V+ R D I GVSEC
Sbjct:  1357 VMLLADLMSFKGEILGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHHRQDDIVGVSEC 1416

Query:  1230 IIMGIPMPLGTGILKIRQR 1248
             IIMG+ +PLGTG+ K+ ++
Sbjct:  1417 IIMGVVIPLGTGLFKLLRK 1435

 Score = 47 (21.6 bits), Expect = 2.6e-241, Sum P(2) = 2.6e-241
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query:   950 NGAKRISTPIITAELECNDN--ENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIAL 1007
             N A +I+   IT ++E N++  E   ++ K RIEK    + +K +K+ +  R A+  +  
Sbjct:  1018 NNAVKITN--ITTDIEMNESNKEENDKIEKERIEKE---KESKRLKL-LGERFANEHVVN 1071

Query:  1008 DMETIQDAHLCINADI 1023
              +  I    + +  DI
Sbjct:  1072 QIHRITKTQIELFLDI 1087

 Score = 43 (20.2 bits), Expect = 1.3e-95, Sum P(2) = 1.3e-95
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query:   118 TNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
             TN AV    I   + M+ S   END  E+ +RI +   S + +L+
Sbjct:  1017 TNNAVKITNITTDIEMNESNKEENDKIEK-ERIEKEKESKRLKLL 1060

 Score = 42 (19.8 bits), Expect = 8.6e-241, Sum P(2) = 8.6e-241
 Identities = 22/79 (27%), Positives = 38/79 (48%)

Query:  1158 MKAHGMSID-KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASV 1216
             M+A    +D  R MM +      R E   +  F I+K+ +S++  + FE   D LF   +
Sbjct:   900 MEAKDRPVDFLRAMMSVKSTRQCRNEP-EMKPFEIRKLVESIIDSSKFEACTD-LFKNEI 957

Query:  1217 ----NGRDDRIEG-VSECI 1230
                 NG +++ +G + E I
Sbjct:   958 RVFFNG-NEKTKGYIQELI 975


>UNIPROTKB|O14802 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase III subunit
            RPC1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0051607
            "defense response to virus" evidence=IEA] [GO:0003682 "chromatin
            binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
            evidence=NAS] [GO:0005666 "DNA-directed RNA polymerase III complex"
            evidence=NAS] [GO:0045087 "innate immune response" evidence=IMP]
            [GO:0032728 "positive regulation of interferon-beta production"
            evidence=IMP] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
            "transcription from RNA polymerase III promoter" evidence=TAS]
            [GO:0006385 "transcription elongation from RNA polymerase III
            promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
            III transcription" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
            EMBL:CH471083 GO:GO:0045087 GO:GO:0051607 Gene3D:2.40.40.20
            InterPro:IPR009010 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
            GO:GO:0032728 KO:K03018 GO:GO:0006386 GO:GO:0006385 eggNOG:COG0086
            GO:GO:0032549 HOVERGEN:HBG004339 CTD:11128 HOGENOM:HOG000222974
            OMA:PRRPLIF OrthoDB:EOG4QVCB4 PANTHER:PTHR19376:SF15 EMBL:AF021351
            EMBL:AL512628 EMBL:BC041089 EMBL:AY091459 IPI:IPI00024163
            RefSeq:NP_008986.2 UniGene:Hs.436896 ProteinModelPortal:O14802
            SMR:O14802 IntAct:O14802 STRING:O14802 PhosphoSite:O14802
            PaxDb:O14802 PRIDE:O14802 Ensembl:ENST00000372371 GeneID:11128
            KEGG:hsa:11128 UCSC:uc001jzn.3 GeneCards:GC10M079729
            HGNC:HGNC:30074 HPA:HPA037926 MIM:607694 MIM:614258
            neXtProt:NX_O14802 Orphanet:88637 Orphanet:77295
            PharmGKB:PA134900426 InParanoid:O14802 PhylomeDB:O14802
            ChiTaRS:POLR3A GenomeRNAi:11128 NextBio:42292 ArrayExpress:O14802
            Bgee:O14802 CleanEx:HS_POLR3A Genevestigator:O14802
            GermOnline:ENSG00000148606 Uniprot:O14802
        Length = 1390

 Score = 3016 (1066.7 bits), Expect = 8.3e-316, Sum P(2) = 8.3e-316
 Identities = 644/1275 (50%), Positives = 858/1275 (67%)

Query:     1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
             ++ P +  L+K  L K I  KC     K + C  CG  NG VKK   +L IIH++ K   
Sbjct:   129 LKRPGLTYLQKRGLKKKISDKCR---KKNI-CHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query:    58 ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                   V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct:   184 KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query:   111 --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct:   244 AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query:   168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct:   304 QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query:   228 TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
             +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ +QNGP+ +PGA  I  
Sbjct:   364 SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQ 423

Query:   286 RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
             R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct:   424 RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query:   346 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
              RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct:   483 HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query:   406 QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
             QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct:   543 QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query:   463 VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
             V++RP  +  V  NL  K K Y  K     G++      +C ND +V  +NSEL+SG + 
Sbjct:   603 VILRPSDDNPVRANLRTKGKQYCGK-----GED------LCANDSYVTIQNSELMSGSMD 651

Query:   523 KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
             K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct:   652 KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query:   583 KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
              K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct:   712 AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query:   643 PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
                NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct:   772 DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query:   703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
             GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct:   832 GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query:   763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
             ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct:   892 SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCPSEPALSKNELILTTE 950

Query:   823 KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
               +       C ++FL  ++KF +G  +K+ KK +  +  G +D       V ++   IT
Sbjct:   951 SIMKKSEFLCCQDSFLQEIKKFIKGVSEKI-KKTR--DKYGINDNGTTEPRVLYQLDRIT 1007

Query:   883 EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
               Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct:  1008 PTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query:   943 PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
             PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct:  1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query:  1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
             I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS ++
Sbjct:  1128 ILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query:  1062 FELYSLKNVLPMVIVKGIKTXXXXXXXXXXXXXXXXXXXXXXXXYRLLVEGTGLQAVMGA 1121
             + L  LK  LP V+V+GI                          Y+LLVEG  L+AVM  
Sbjct:  1187 YVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEK--------YKLLVEGDNLRAVMAT 1238

Query:  1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
              G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct:  1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query:  1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct:  1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query:  1242 ILKI---RQRDAVPP 1253
             + K+     RD  PP
Sbjct:  1359 LFKLLHKADRDPNPP 1373

 Score = 37 (18.1 bits), Expect = 8.3e-316, Sum P(2) = 8.3e-316
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query:     7 EALRKTDLMKSIVKKCSTMAS 27
             E  R+TD+ K I   C  M S
Sbjct:     4 EQFRETDVAKKISHICFGMKS 24


>UNIPROTKB|F1S2E6 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase" species:9823
            "Sus scrofa" [GO:0045087 "innate immune response" evidence=IEA]
            [GO:0032728 "positive regulation of interferon-beta production"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
            "chromatin binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
            GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 GO:GO:0032728 KO:K03018 GO:GO:0032549
            GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
            EMBL:CU407090 RefSeq:XP_001929395.1 Ensembl:ENSSSCT00000011305
            GeneID:100156229 KEGG:ssc:100156229 Uniprot:F1S2E6
        Length = 1390

 Score = 3008 (1063.9 bits), Expect = 5.8e-315, Sum P(2) = 5.8e-315
 Identities = 643/1275 (50%), Positives = 856/1275 (67%)

Query:     1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
             ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct:   129 LKRPGLTYLQKRGLKKKISDKCR----KKNTCHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query:    58 ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                   V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct:   184 KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPE 243

Query:   111 --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct:   244 AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query:   168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct:   304 QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query:   228 TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
             +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGP+ +PGA  I  
Sbjct:   364 SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANITFLRKLVRNGPEVHPGANFIQQ 423

Query:   286 RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
             R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct:   424 RHTQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query:   346 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
              RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct:   483 HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query:   406 QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
             QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct:   543 QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQVFS 602

Query:   463 VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
             V++RP  +  V  NL  K K Y  K     G++      +C ND +V  +NSEL+SG + 
Sbjct:   603 VILRPSYDNPVRANLRTKGKQYCGK-----GED------LCVNDSYVTIQNSELMSGSMD 651

Query:   523 KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
             K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct:   652 KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query:   583 KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
              K +L++  Y  C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct:   712 AKYELLNAGYRKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query:   643 PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
                NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct:   772 DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query:   703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
             GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct:   832 GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query:   763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
             ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct:   892 SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCQSEPALSKNELLLTTE 950

Query:   823 KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
               +       C ++FL  ++KF +G  +K+ KK +  +  G +D       V ++   IT
Sbjct:   951 SIMKKNEFLCCQDSFLQEIKKFIKGVSEKI-KKTR--DKYGINDNGTTEPRVLYQLDRIT 1007

Query:   883 EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
               Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct:  1008 PTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query:   943 PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
             PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct:  1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query:  1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
             I+I L +E I+   L +NA+ V+ SI  + K+++K   + V     + + P  + KS ++
Sbjct:  1128 ILIKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query:  1062 FELYSLKNVLPMVIVKGIKTXXXXXXXXXXXXXXXXXXXXXXXXYRLLVEGTGLQAVMGA 1121
             + L  LK  LP V+V+GI                          Y+LLVEG  L+AVM  
Sbjct:  1187 YVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEK--------YKLLVEGDNLRAVMAT 1238

Query:  1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
              G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct:  1239 HGVKGTQTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query:  1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct:  1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query:  1242 ILKI---RQRDAVPP 1253
             + K+     RD  PP
Sbjct:  1359 LFKLLHKANRDPSPP 1373

 Score = 37 (18.1 bits), Expect = 5.8e-315, Sum P(2) = 5.8e-315
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query:     7 EALRKTDLMKSIVKKCSTMAS 27
             E  R+TD+ K I   C  M S
Sbjct:     4 EQFRETDVAKKISHICFGMKS 24


>UNIPROTKB|F1NIK7 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0032728 "positive
            regulation of interferon-beta production" evidence=IEA] [GO:0045087
            "innate immune response" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
            GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 GO:GO:0032728 GO:GO:0032549
            GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
            IPI:IPI00580235 EMBL:AADN02027942 EMBL:AADN02027940
            EMBL:AADN02027941 Ensembl:ENSGALT00000007929 Uniprot:F1NIK7
        Length = 1390

 Score = 3016 (1066.7 bits), Expect = 1.9e-314, P = 1.9e-314
 Identities = 642/1275 (50%), Positives = 861/1275 (67%)

Query:     1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
             ++ P +  L+K  L K + +KC     K   CP CG  NG VKK   +L IIH++ K   
Sbjct:   129 LKRPGLTYLQKRGLKKKVSEKCR----KKNTCPYCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query:    58 ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                   V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct:   184 KVVDPIVSTFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPE 243

Query:   111 --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct:   244 AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query:   168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct:   304 QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query:   228 TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
             +GRTVISPDPNL+I EVA+PI +A+ILT+PE+V+  NI  +R+ ++NGPD +PGA  I  
Sbjct:   364 SGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQQ 423

Query:   286 RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
             R+      + YG  R ++A ELK G IV+RHL DGD+VLFNRQPSLH++SIM H AR+ P
Sbjct:   424 RHTQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKP 482

Query:   346 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
              RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct:   483 HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query:   406 QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
             QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP PAILKPV LWTGKQ+FS
Sbjct:   543 QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFS 602

Query:   463 VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
             ++++P  +  V  NL  K K Y  K     G++      +C ND +V  +NSEL+SG + 
Sbjct:   603 LILKPSDDCPVKANLRTKGKQYCGK-----GED------LCYNDSYVTIQNSELMSGSMD 651

Query:   523 KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
             K TLG+G+K+ ++ +LLRD+G    +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct:   652 KGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query:   583 KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
              K +L+   Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct:   712 AKYELLHAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query:   643 PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
                NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct:   772 DKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query:   703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
             GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct:   832 GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query:   763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
             ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  ++A  P   +  LS  ++    E
Sbjct:   892 SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVYPCRSEPALSKNELVLTSE 950

Query:   823 KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
               +       C ++FL  ++KF +G  +K+ KK +  +  G +D       V ++   IT
Sbjct:   951 SIMKKNEFLCCRDSFLQEIKKFIKGVSEKI-KKTR--DKYGINDNGTTEPRVLYQLDRIT 1007

Query:   883 EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
               QLE F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct:  1008 PTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query:   943 PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
             PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct:  1068 PRIKEIINASKAISTPIITAQLDKDDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query:  1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
             I++ L +E I+   L +NA+ V+ SI  + K+++K   + V     + + P  + KS ++
Sbjct:  1128 ILVKLSLERIRLLRLEVNAETVRYSICIS-KLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query:  1062 FELYSLKNVLPMVIVKGIKTXXXXXXXXXXXXXXXXXXXXXXXXYRLLVEGTGLQAVMGA 1121
             + L SLK  LP V+V+GI                          Y+LLVEG  L+AVM  
Sbjct:  1187 YVLQSLKEELPKVVVQGIPEVSRAVIHIDEQSGKEK--------YKLLVEGDNLRAVMAT 1238

Query:  1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
              G+ G KT SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct:  1239 HGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query:  1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct:  1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query:  1242 ILKI---RQRDAVPP 1253
             + K+     +++ PP
Sbjct:  1359 LFKLLHKADKESTPP 1373


>UNIPROTKB|Q5ZL98 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase III subunit
            RPC1" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
            eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 HOVERGEN:HBG004339
            CTD:11128 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
            PANTHER:PTHR19376:SF15 EMBL:AJ719836 IPI:IPI00580235
            RefSeq:NP_001006500.1 UniGene:Gga.11367 ProteinModelPortal:Q5ZL98
            STRING:Q5ZL98 PRIDE:Q5ZL98 GeneID:423727 KEGG:gga:423727
            InParanoid:Q5ZL98 NextBio:20826153 Uniprot:Q5ZL98
        Length = 1390

 Score = 3013 (1065.7 bits), Expect = 3.9e-314, P = 3.9e-314
 Identities = 642/1275 (50%), Positives = 860/1275 (67%)

Query:     1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
             ++ P +  L+K  L K + +KC     K   CP CG  NG VKK   +L IIH++ K   
Sbjct:   129 LKRPGLTYLQKRGLKKKVSEKCR----KKNTCPYCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query:    58 ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                   V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct:   184 KVVDPIVSTFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPE 243

Query:   111 --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct:   244 AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query:   168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct:   304 QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query:   228 TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
             +GRTVISPDPNL+I EVA+PI +A+ILT+PE+V+  NI  +R+ ++NGPD +PGA  I  
Sbjct:   364 SGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQQ 423

Query:   286 RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
             R+      + YG  R ++A ELK G IV+RHL DGD+VLFNRQPSLH++SIM H AR+ P
Sbjct:   424 RHTQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKP 482

Query:   346 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
              RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct:   483 HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query:   406 QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
             QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP PAILKPV LWTGKQ+FS
Sbjct:   543 QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFS 602

Query:   463 VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
              +++P  +  V  NL  K K Y  K     G++      +C ND +V  +NSEL+SG + 
Sbjct:   603 SILKPSDDCPVKANLRTKGKQYCGK-----GED------LCYNDSYVTIQNSELMSGSMD 651

Query:   523 KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
             K TLG+G+K+ ++ +LLRD+G    +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct:   652 KGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query:   583 KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
              K +L+   Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct:   712 AKYELLHAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query:   643 PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
                NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct:   772 DKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query:   703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
             GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct:   832 GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query:   763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
             ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  ++A  P   +  LS  ++    E
Sbjct:   892 SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVYPCRSEPALSKNELVLTSE 950

Query:   823 KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
               +       C ++FL  ++KF +G  +K+ KK +  +  G +D       V ++   IT
Sbjct:   951 SIMKKNEFLCCRDSFLQEIKKFIKGVSEKI-KKTR--DKYGINDNGTTEPRVLYQLDRIT 1007

Query:   883 EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
               QLE F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct:  1008 PTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query:   943 PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
             PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct:  1068 PRIKEIINASKAISTPIITAQLDKDDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query:  1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
             I++ L +E I+   L +NA+ V+ SI  + K+++K   + V     + + P  + KS ++
Sbjct:  1128 ILVKLSLERIRLLRLEVNAETVRYSICIS-KLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query:  1062 FELYSLKNVLPMVIVKGIKTXXXXXXXXXXXXXXXXXXXXXXXXYRLLVEGTGLQAVMGA 1121
             + L SLK  LP V+V+GI                          Y+LLVEG  L+AVM  
Sbjct:  1187 YVLQSLKEELPKVVVQGIPEVSRAVIHIDEQSGKEK--------YKLLVEGDNLRAVMAT 1238

Query:  1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
              G+ G KT SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct:  1239 HGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query:  1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct:  1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query:  1242 ILKI---RQRDAVPP 1253
             + K+     +++ PP
Sbjct:  1359 LFKLLHKADKESTPP 1373


>UNIPROTKB|A4IF62 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase III subunit
            RPC1" species:9913 "Bos taurus" [GO:0045087 "innate immune
            response" evidence=ISS] [GO:0032728 "positive regulation of
            interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0051607 "defense response to virus" evidence=IEA] [GO:0032549
            "ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
            GO:GO:0051607 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            GO:GO:0032728 KO:K03018 eggNOG:COG0086 GO:GO:0032549
            GeneTree:ENSGT00700000104490 HOVERGEN:HBG004339 EMBL:BC134422
            IPI:IPI00701819 RefSeq:NP_001077219.1 UniGene:Bt.58772
            ProteinModelPortal:A4IF62 STRING:A4IF62 PRIDE:A4IF62
            Ensembl:ENSBTAT00000017638 GeneID:540308 KEGG:bta:540308 CTD:11128
            HOGENOM:HOG000222974 InParanoid:A4IF62 OMA:PRRPLIF
            OrthoDB:EOG4QVCB4 NextBio:20878554 ArrayExpress:A4IF62
            PANTHER:PTHR19376:SF15 Uniprot:A4IF62
        Length = 1390

 Score = 3000 (1061.1 bits), Expect = 4.1e-314, Sum P(2) = 4.1e-314
 Identities = 640/1275 (50%), Positives = 856/1275 (67%)

Query:     1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
             ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct:   129 LKRPGLTYLQKRGLKKKISDKCR----KKNTCHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query:    58 ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                   V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct:   184 KVVDPIVSSFLQSFETAIEHNKEVEPLLGKAQENLNPLVVLNLFKRIPAEDIPLLLMNPE 243

Query:   111 --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct:   244 AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query:   168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct:   304 QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query:   228 TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
             +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGP+ +PGA  I  
Sbjct:   364 SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQ 423

Query:   286 RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
             R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct:   424 RHTQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query:   346 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
              RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct:   483 HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query:   406 QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
             QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct:   543 QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query:   463 VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
             V++RP  +  V  NL  K K Y  +     G++      +C ND +V  +NSEL+SG + 
Sbjct:   603 VILRPSDDNPVRANLRTKGKQYCGR-----GED------LCVNDSYVTIQNSELMSGSMD 651

Query:   523 KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
             K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct:   652 KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query:   583 KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
              K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct:   712 AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query:   643 PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
                NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct:   772 DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query:   703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
             GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct:   832 GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query:   763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
             ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct:   892 SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCRSEPALSKNELLLSAE 950

Query:   823 KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
               +       C ++FL  ++KF +   +K+ KK +  +  G +D       V ++   IT
Sbjct:   951 SIMKKNEFLCCQDSFLQEIKKFIKEVSEKI-KKTR--DKYGINDNGTTEPRVLYQLDRIT 1007

Query:   883 EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
               Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct:  1008 PTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query:   943 PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
             PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct:  1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query:  1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
             I++ L +E I+   L +NA+ V+ SI  + K+++K   + V     + + P  + KS ++
Sbjct:  1128 ILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query:  1062 FELYSLKNVLPMVIVKGIKTXXXXXXXXXXXXXXXXXXXXXXXXYRLLVEGTGLQAVMGA 1121
             + L  LK  LP V+V+GI                          Y+LLVEG  L+AVM  
Sbjct:  1187 YVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEK--------YKLLVEGDNLRAVMAT 1238

Query:  1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
              G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct:  1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query:  1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct:  1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query:  1242 ILKI---RQRDAVPP 1253
             + K+     RD  PP
Sbjct:  1359 LFKLLHKANRDPSPP 1373

 Score = 37 (18.1 bits), Expect = 4.1e-314, Sum P(2) = 4.1e-314
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query:     7 EALRKTDLMKSIVKKCSTMAS 27
             E  R+TD+ K I   C  M S
Sbjct:     4 EQFRETDVAKKISHICFGMKS 24


>UNIPROTKB|J9P629 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase" species:9615
            "Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 KO:K03018 GO:GO:0032549
            GeneTree:ENSGT00700000104490 CTD:11128 OMA:PRRPLIF
            PANTHER:PTHR19376:SF15 EMBL:AAEX03002853 RefSeq:XP_536399.2
            Ensembl:ENSCAFT00000047369 GeneID:479256 KEGG:cfa:479256
            Uniprot:J9P629
        Length = 1390

 Score = 2999 (1060.8 bits), Expect = 5.2e-314, Sum P(2) = 5.2e-314
 Identities = 640/1275 (50%), Positives = 857/1275 (67%)

Query:     1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
             ++ P +  L+K  L K I  KC     K + C  CG  NG VKK   +L IIH++ K   
Sbjct:   129 LKRPGLTYLQKRGLKKKISDKCR---KKNI-CHYCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query:    58 ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                   V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct:   184 KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query:   111 --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct:   244 AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query:   168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct:   304 QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query:   228 TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
             +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGP+ +PGA  I  
Sbjct:   364 SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQ 423

Query:   286 RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
             R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H A++ P
Sbjct:   424 RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKP 482

Query:   346 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
              RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct:   483 HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query:   406 QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
             QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct:   543 QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVHLPPPTILKPVTLWTGKQIFS 602

Query:   463 VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
             V++RP  +  V  NL  K K Y  K     G++      +C ND +V  +NSEL+SG + 
Sbjct:   603 VILRPSDDNPVRANLRTKGKQYCGK-----GED------LCVNDSYVTIQNSELMSGSMD 651

Query:   523 KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
             K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct:   652 KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query:   583 KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
              K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct:   712 AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query:   643 PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
                NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct:   772 DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query:   703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
             GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct:   832 GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query:   763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
             ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct:   892 SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCQSEPALSKNELVLTTE 950

Query:   823 KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
               +       C ++FL  ++ F +G  +K+ KK +  +  G +D       V ++   IT
Sbjct:   951 SIMKKTEFLCCQDSFLQEIKNFVKGISEKI-KKTR--DKYGINDNGTTEPRVLYQLDRIT 1007

Query:   883 EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
               Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct:  1008 PTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query:   943 PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
             PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct:  1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query:  1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
             I++ L +E I+   L +NA+ V+ SI  + K+++K   + V     + + P  + KS ++
Sbjct:  1128 ILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query:  1062 FELYSLKNVLPMVIVKGIKTXXXXXXXXXXXXXXXXXXXXXXXXYRLLVEGTGLQAVMGA 1121
             + L  LK  LP V+V+GI                          Y+LLVEG  L+AVM  
Sbjct:  1187 YVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEK--------YKLLVEGDNLRAVMAT 1238

Query:  1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
              G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct:  1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query:  1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct:  1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query:  1242 ILKI---RQRDAVPP 1253
             + K+     RD  PP
Sbjct:  1359 LFKLLHKADRDPSPP 1373

 Score = 37 (18.1 bits), Expect = 5.2e-314, Sum P(2) = 5.2e-314
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query:     7 EALRKTDLMKSIVKKCSTMAS 27
             E  R+TD+ K I   C  M S
Sbjct:     4 EQFRETDVAKKISHICFGMKS 24


>ZFIN|ZDB-GENE-050208-103 [details] [associations]
            symbol:polr3a "polymerase (RNA) III (DNA directed)
            polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0032549 "ribonucleoside
            binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
            activity" evidence=IEA] [GO:0016740 "transferase activity"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
            ZFIN:ZDB-GENE-050208-103 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            KO:K03018 GO:GO:0032549 GeneTree:ENSGT00700000104490
            PANTHER:PTHR19376:SF15 EMBL:CABZ01084340 EMBL:CABZ01084341
            EMBL:CABZ01084342 EMBL:CABZ01084343 EMBL:CABZ01084344
            EMBL:CABZ01084345 EMBL:CABZ01084346 IPI:IPI00960980
            RefSeq:XP_003199716.1 UniGene:Dr.109694 Ensembl:ENSDART00000105273
            GeneID:572258 KEGG:dre:572258 NextBio:20890901 Bgee:E7F5P2
            Uniprot:E7F5P2
        Length = 1390

 Score = 2998 (1060.4 bits), Expect = 1.5e-312, P = 1.5e-312
 Identities = 636/1285 (49%), Positives = 861/1285 (67%)

Query:     1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
             +R P +  L+K  L K I  KC     K   C  C   NG VKK   +L IIH++ K   
Sbjct:   129 LRRPGLAYLQKRGLKKKISDKCR----KKTVCLNCNAFNGSVKKC-GLLKIIHEKYKSTK 183

Query:    58 ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL--- 108
                   V++ LQ F  AI H KE ++ +  A   LNP+ VL LF+R+ D D  +L +   
Sbjct:   184 KVVDPAVSDFLQSFDVAIEHNKEVESLLTRAQENLNPLVVLNLFRRIPDKDVPLLLMNPE 243

Query:   109 SERPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
             S +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct:   244 SGKPADLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKT 303

Query:   168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct:   304 QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query:   228 TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
             +GRTVISPDPNL+I EVA+P+ +A+ILTYPE+V+  NIE +R+ ++NGP+ +PGA  I  
Sbjct:   364 SGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPGANFIQQ 423

Query:   286 RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
             R+      + YG  R ++A ELK G +V+RH+ DGD+VLFNRQPSLH++SIM H AR+ P
Sbjct:   424 RHMQMKRFLKYGN-REKMAQELKFGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIARVKP 482

Query:   346 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
              RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct:   483 HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query:   406 QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
             QDFLT ++L+T KDTF+DR     +   +  G D   ++ LP PAILKP+ LWTGKQ+FS
Sbjct:   543 QDFLTGAYLLTLKDTFFDRTKACQIVASILVGKDEKIKISLPHPAILKPIRLWTGKQIFS 602

Query:   463 VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
             ++++P  +  V  NL  K K Y  K     G++      +C ND FV   NSEL+ G + 
Sbjct:   603 LILKPSKSCPVMANLRTKGKQYCGK-----GED------LCANDSFVVIHNSELMCGSMD 651

Query:   523 KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
             K TLG+G+K+ ++ +LLRD+G    +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct:   652 KGTLGSGSKNNIFYILLRDWGQQEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query:   583 KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
              K +L+   YE C+  I     G+LQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct:   712 AKQELLDAGYEKCDEYIDALKTGRLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query:   643 PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
                NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct:   772 DKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFQKHSKLPAAK 831

Query:   703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
             GFVA+SFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct:   832 GFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query:   763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
             ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  ++A     G+  LS  ++    +
Sbjct:   892 SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVYSCTGEPALSRNELLLTSD 950

Query:   823 KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
               +       C + FL  +RKF +   +K+ KK +  +  G +D      +V ++   IT
Sbjct:   951 SIMKRKDFLCCKDTFLEEIRKFIKTVSEKV-KKTR--DKYGINDNGTTEPKVLYQLDRIT 1007

Query:   883 EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
               QLE F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct:  1008 PTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query:   943 PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
             PRIKEIIN +K ISTPII+A L+ ND+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct:  1068 PRIKEIINASKNISTPIISANLDTNDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDDTF 1127

Query:  1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
             I++ L ++ I+   L +NA+ V+ SI  T K+++K   ++V     + + P  + KS ++
Sbjct:  1128 ILVKLSLDRIRLLRLEVNAETVRYSIC-TSKLRVKPGDVQVHGEAVVCVSPRENSKSSMY 1186

Query:  1062 FELYSLKNVLPMVIVKGIKTXXXXXXXXXXXXXXXXXXXXXXXXYRLLVEGTGLQAVMGA 1121
             + L SLK  LP V+V+GI                          ++LLVEG  +++VM  
Sbjct:  1187 YVLQSLKQDLPKVVVQGIPEVSRAVIHIDEQSGKQK--------FKLLVEGDNMRSVMAT 1238

Query:  1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
              G++G KT SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLLADLM+++G
Sbjct:  1239 HGVNGSKTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKG 1298

Query:  1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             E+LGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct:  1299 EILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query:  1242 ILKI---RQRDAVPPM--LKYGAPD 1261
             + K+     R+A PP   L + +PD
Sbjct:  1359 LFKLLHRSNREADPPRRPLLFDSPD 1383


>SGD|S000005642 [details] [associations]
            symbol:RPO31 "RNA polymerase III largest subunit C160"
            species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;IDA] [GO:0005666 "DNA-directed RNA polymerase III
            complex" evidence=IDA] [GO:0042797 "tRNA transcription from RNA
            polymerase III promoter" evidence=IDA] [GO:0046872 "metal ion
            binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
            activity" evidence=IEA] [GO:0016740 "transferase activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 SGD:S000005642
            EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:X90518
            EMBL:X94335 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005666
            GO:GO:0003899 Reactome:REACT_83470 KO:K03018 OrthoDB:EOG4X3M8C
            eggNOG:COG0086 GO:GO:0032549 Reactome:REACT_87991 GO:GO:0042797
            GeneTree:ENSGT00700000104490 HOGENOM:HOG000222974
            PANTHER:PTHR19376:SF15 EMBL:X03129 EMBL:Z75024 PIR:A00694
            RefSeq:NP_014759.1 ProteinModelPortal:P04051 SMR:P04051
            DIP:DIP-612N IntAct:P04051 MINT:MINT-557787 STRING:P04051
            PaxDb:P04051 PeptideAtlas:P04051 EnsemblFungi:YOR116C GeneID:854283
            KEGG:sce:YOR116C CYGD:YOR116c OMA:CINELDN NextBio:976257
            Genevestigator:P04051 GermOnline:YOR116C Uniprot:P04051
        Length = 1460

 Score = 1988 (704.9 bits), Expect = 3.6e-306, Sum P(4) = 3.6e-306
 Identities = 401/772 (51%), Positives = 529/772 (68%)

Query:    47 AVLGIIHD------RSKVTES---LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKR 97
             A L IIHD      +    E    + E+   + H  E +  V      LNP+  L LFK+
Sbjct:   174 AALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDDLNPLKTLNLFKQ 233

Query:    98 MTDTDCEVLYL-----SERPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRII 151
             +   DCE+L +     S RPE  I   +  PP+ IRPSV+M D   SNE+D+T +L  I+
Sbjct:   234 IKSADCELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIV 293

Query:   152 QTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRG---VPFSMQ---VARPLSGF 205
              T++ ++  L +  S    +  W+ LQ+ VA YINSD      +P S       +P+ GF
Sbjct:   294 WTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGF 353

Query:   206 VQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNI 265
              QRLKGKQGRFRGNLSGKRV+++GRTVISPDPNL I EVA+P R+A++LTYPE+V+ +N 
Sbjct:   354 CQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNR 413

Query:   266 EKLRQCIQNGPDKYPGARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVV 323
              KL++ I NGP+ +PGA  +  R  D    + YG  R +LA  L+ G +V+RHLEDGDVV
Sbjct:   414 HKLQELIVNGPNVHPGANYLLKRNEDARRNLRYGD-RMKLAKNLQIGDVVERHLEDGDVV 472

Query:   324 LFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAL 383
             LFNRQPSLHR+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+
Sbjct:   473 LFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAI 532

Query:   384 LLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDL 443
              LMGV+NNL TPK+GE ++A+TQDF+T S+LI+ KD+FYDRA  + +   M DG++  D+
Sbjct:   533 NLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGIEHFDI 592

Query:   444 PTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMC 503
             P PAI+KP  LWTGKQ+FS+LI+P+ N  V +NL  K K +     ++  +E      M 
Sbjct:   593 PPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNE------MS 646

Query:   504 PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIG 563
              NDGFV  R S+++SG + K+ LG+G K  ++  +LRDYG    +  MNR+AKL AR++G
Sbjct:   647 QNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLG 706

Query:   564 NHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
             N GFSIGI+DV P  +L  KK +L+   Y  C+  I  +N+G+L+ +PGC+  QTLEA I
Sbjct:   707 NRGFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKI 766

Query:   624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
               +L+++RE+ G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+G
Sbjct:   767 GGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDG 826

Query:   684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
             F DRSLPHFP+ +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKTA+TGYMS
Sbjct:   827 FQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMS 886

Query:   744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR 795
             RRL+K+LEDLS QYDN+VR +   IVQF YG DG+DP  MEG + +P+NF+R
Sbjct:   887 RRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGLDPLEMEGNA-QPVNFNR 937

 Score = 827 (296.2 bits), Expect = 3.6e-306, Sum P(4) = 3.6e-306
 Identities = 201/440 (45%), Positives = 262/440 (59%)

Query:   838 LNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSG---ITEKQLEVFIQTCF 894
             L +LRK   G    L+   K ++ I  D    + + V    S    I+EK +  F++   
Sbjct:  1019 LANLRKS-RGMLGLLEPPAKELQGI--DPDETVPDNVKTSVSQLYRISEKSVRKFLEIAL 1075

Query:   895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
              +YR  R+E GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K 
Sbjct:  1076 FKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKV 1135

Query:   955 ISTPIITAELECNDN-ENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
             ISTPII A L  NDN E AARVVKGR+EKTLL  VA  ++ V    L+ I + +D+ TI 
Sbjct:  1136 ISTPIINAVL-VNDNDERAARVVKGRVEKTLLSDVAFYVQDVYKDNLSFIQVRIDLGTID 1194

Query:  1014 DAHLCINADIVKESIVQTPKIKLKQQHIKVL--DFRKLEIFPPVDKSK------------ 1059
                L +  + +  +I +  K+K++   + ++  D   + +FP   K+K            
Sbjct:  1195 KLQLELTIEDIAVAITRASKLKIQASDVNIIGKDRIAINVFPEGYKAKSISTSAKEPSEN 1254

Query:  1060 -IHFELYSLKNVLPMVIVKGIKTXXXXXXXXXXXXXXXXXXXXXXXXYRLLVEGTGLQAV 1118
              + + +  L+  LP V+VKG+                            LLVEG GL+ V
Sbjct:  1255 DVFYRMQQLRRALPDVVVKGLPDISRAVINIRDDGKR-----------ELLVEGYGLRDV 1303

Query:  1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
             M  +G+ G +T +NH+ EV   LGIEAAR  II EIN TM  HGMS+D RH+ LL D+MT
Sbjct:  1304 MCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMT 1363

Query:  1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
             ++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSECII+G  M +
Sbjct:  1364 YKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSI 1423

Query:  1239 GTGILK------IRQRDAVP 1252
             GTG  K      I ++D VP
Sbjct:  1424 GTGSFKVVKGTNISEKDLVP 1443

 Score = 138 (53.6 bits), Expect = 3.6e-306, Sum P(4) = 3.6e-306
 Identities = 39/120 (32%), Positives = 59/120 (49%)

Query:     1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLG-----IIHD- 54
             +R P ++ LR+  ++K I+ +C     K  +C  CG +NG+VKKA A  G     IIHD 
Sbjct:   127 LRRPGVDNLRRMGILKKILDQCK----KQRRCLHCGALNGVVKKAAAGAGSAALKIIHDT 182

Query:    55 -----RSKVTES---LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
                  +    E    + E+   + H  E +  V      LNP+  L LFK++   DCE+L
Sbjct:   183 FRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELL 242

 Score = 47 (21.6 bits), Expect = 6.3e-221, Sum P(3) = 6.3e-221
 Identities = 21/82 (25%), Positives = 37/82 (45%)

Query:  1150 IIDEINETMKAHGMSIDKRHMMLLADLM-----TFRGEVLGITRF-----GIQKMD-KSV 1198
             ++D   +T +   MS  +R M  L DL      T R    GI +F     G+  ++ +  
Sbjct:   872 LVDTAVKTAETGYMS--RRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGLDPLEMEGN 929

Query:  1199 LMLASFEKTADHLFNASVNGRD 1220
                 +F ++ DH +N + N +D
Sbjct:   930 AQPVNFNRSWDHAYNITFNNQD 951

 Score = 41 (19.5 bits), Expect = 3.6e-306, Sum P(4) = 3.6e-306
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query:   743 SRRLIKALEDLSIQYDNSVRNAGGCIVQ 770
             +  ++  LE+  ++YDNS     GC+V+
Sbjct:   963 ANEILGPLEERLVRYDNS-----GCLVK 985

 Score = 40 (19.1 bits), Expect = 1.8e-78, Sum P(3) = 1.8e-78
 Identities = 12/61 (19%), Positives = 25/61 (40%)

Query:     1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             +RN     L   + +   +     +   AVK    GY++  + K++  L   +D +  T 
Sbjct:   848 VRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTS 907

Query:    61 S 61
             +
Sbjct:   908 A 908

 Score = 38 (18.4 bits), Expect = 1.9e-88, Sum P(3) = 1.9e-88
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query:   291 TARVLYGKFRNQLAVELKSGCIVDR 315
             TA  + G    +L     SGC+V R
Sbjct:   962 TANEILGPLEERLVRYDNSGCLVKR 986


>UNIPROTKB|E9PTB6 [details] [associations]
            symbol:Polr3a "DNA-directed RNA polymerase" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0032728
            "positive regulation of interferon-beta production" evidence=IEA]
            [GO:0045087 "innate immune response" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:1305574 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032728
            GO:GO:0032549 GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
            IPI:IPI00766228 PRIDE:E9PTB6 Ensembl:ENSRNOT00000013501
            Uniprot:E9PTB6
        Length = 1342

 Score = 2920 (1033.0 bits), Expect = 1.2e-305, Sum P(2) = 1.2e-305
 Identities = 622/1244 (50%), Positives = 835/1244 (67%)

Query:     1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
             ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct:   129 LKRPGLTYLQKRGLKKKISDKCR----KKSTCHYCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query:    58 ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                   V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct:   184 KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query:   111 --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct:   244 AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query:   168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct:   304 QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query:   228 TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
             +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGPD +PGA  I  
Sbjct:   364 SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQ 423

Query:   286 RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
             R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H A++ P
Sbjct:   424 RHMQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKP 482

Query:   346 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
              RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct:   483 HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query:   406 QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
             QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct:   543 QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query:   463 VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
             V++RP  +  V  NL  K K Y  K     G++      +C ND +V  +NSEL+ G + 
Sbjct:   603 VILRPSDDNPVRANLRTKGKQYCGK-----GED------LCTNDSYVTIQNSELMCGSMD 651

Query:   523 KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
             K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct:   652 KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query:   583 KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
              K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct:   712 AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query:   643 PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
                NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct:   772 DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query:   703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
             GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct:   832 GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query:   763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
             ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +R LS  +++   E
Sbjct:   892 SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVYPCQSERALSKNELTLTTE 950

Query:   823 KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
               +       C ++FL  ++ F +G  +K+ KK +  +  G +D       V ++   IT
Sbjct:   951 AIMKKNEFLCCQDSFLQEIKTFIKGVSEKI-KKTR--DKYGINDNGTTEPRVLYQLDRIT 1007

Query:   883 EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
               Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct:  1008 RTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query:   943 PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
             PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct:  1068 PRIKEIINASKAISTPIITAQLDMDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query:  1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
             I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS ++
Sbjct:  1128 ILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query:  1062 FELYSLKNVLPMVIVKGIKTXXXXXXXXXXXXXXXXXXXXXXXXYRLLVEGTGLQAVMGA 1121
             + L  LK  LP V+V+GI                          ++LLVEG  L+AVM  
Sbjct:  1187 YVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEK--------FKLLVEGDNLRAVMAT 1238

Query:  1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
              G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct:  1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query:  1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
             EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + G
Sbjct:  1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCG 1342

 Score = 37 (18.1 bits), Expect = 1.2e-305, Sum P(2) = 1.2e-305
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query:     7 EALRKTDLMKSIVKKCSTMAS 27
             E  R+TD+ K I   C  M S
Sbjct:     4 EQFRETDVAKKISHICFGMKS 24


>UNIPROTKB|E2QXD8 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase" species:9615
            "Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
            GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
            EMBL:AAEX03002853 Ensembl:ENSCAFT00000024699 Uniprot:E2QXD8
        Length = 1376

 Score = 2166 (767.5 bits), Expect = 1.6e-301, Sum P(3) = 1.6e-301
 Identities = 458/937 (48%), Positives = 622/937 (66%)

Query:     1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
             ++ P +  L+K  L K I  KC     K + C  CG  NG VKK   +L IIH++ K   
Sbjct:   129 LKRPGLTYLQKRGLKKKISDKCR---KKNI-CHYCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query:    58 ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                   V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct:   184 KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query:   111 --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct:   244 AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query:   168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct:   304 QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query:   228 TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
             +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGP+ +PGA  I  
Sbjct:   364 SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQ 423

Query:   286 RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
             R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H A++ P
Sbjct:   424 RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKP 482

Query:   346 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
              RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct:   483 HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query:   406 QDFLTS---SFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQ 459
             QDFLT+   ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ
Sbjct:   543 QDFLTAFVGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVHLPPPTILKPVTLWTGKQ 602

Query:   460 LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
             +FSV++RP  +  V  NL  K K Y  K     G++      +C ND +V  +NSEL+SG
Sbjct:   603 IFSVILRPSDDNPVRANLRTKGKQYCGK-----GED------LCVNDSYVTIQNSELMSG 651

Query:   520 QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
              + K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + 
Sbjct:   652 SMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQG 711

Query:   580 LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
             L   K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+
Sbjct:   712 LLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACL 771

Query:   640 GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
               L   NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K P
Sbjct:   772 RELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLP 831

Query:   700 AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AAKGFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD 
Sbjct:   832 AAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDL 891

Query:   760 SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
             +VR++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++  
Sbjct:   892 TVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCQSEPALSKNELVL 950

Query:   820 IVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTS 879
               E  +       C ++FL  ++ F +G  +K+ KK +  +  G +D       V ++  
Sbjct:   951 TTESIMKKTEFLCCQDSFLQEIKNFVKGISEKI-KKTR--DKYGINDNGTTEPRVLYQLD 1007

Query:   880 GITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSI 916
              IT  Q+E F++TC  +Y   ++E G+A+GA+ AQS+
Sbjct:  1008 RITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSV 1044

 Score = 733 (263.1 bits), Expect = 1.6e-301, Sum P(3) = 1.6e-301
 Identities = 168/340 (49%), Positives = 225/340 (66%)

Query:   918 EPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVK 977
             EPG+   +       VASMNIT GVPRIKEIIN +K ISTPIITA+L+ +D+ + AR+VK
Sbjct:  1031 EPGS--AVGALCAQSVASMNITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVK 1088

Query:   978 GRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLK 1037
             GRIEKTLLG++++ I+ V       I++ L +E I+   L +NA+ V+ SI  + K+++K
Sbjct:  1089 GRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVK 1147

Query:  1038 QQHIKVLDFRKLEIFPPVD-KSKIHFELYSLKNVLPMVIVKGIKTXXXXXXXXXXXXXXX 1096
                + V     + + P  + KS +++ L  LK  LP V+V+GI                 
Sbjct:  1148 PGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKE 1207

Query:  1097 XXXXXXXXXYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINE 1156
                      Y+LLVEG  L+AVM   G+ G +T SN+ +EV++TLGIEAAR  II+EI  
Sbjct:  1208 K--------YKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQY 1259

Query:  1157 TMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASV 1216
             TM  HGMSID+RH+MLL+DLMT++GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+ 
Sbjct:  1260 TMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAY 1319

Query:  1217 NGRDDRIEGVSECIIMGIPMPLGTGILKI---RQRDAVPP 1253
              G+ D + GVSECIIMGIPM +GTG+ K+     RD  PP
Sbjct:  1320 FGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADRDPSPP 1359

 Score = 37 (18.1 bits), Expect = 1.6e-301, Sum P(3) = 1.6e-301
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query:     7 EALRKTDLMKSIVKKCSTMAS 27
             E  R+TD+ K I   C  M S
Sbjct:     4 EQFRETDVAKKISHICFGMKS 24


>CGD|CAL0002215 [details] [associations]
            symbol:orf19.3103 species:5476 "Candida albicans" [GO:0005666
            "DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
            polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 CGD:CAL0002215 GO:GO:0005634 GO:GO:0003677
            GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 EMBL:AACQ01000086 KO:K03018 eggNOG:COG0086
            GO:GO:0032549 PANTHER:PTHR19376:SF15 RefSeq:XP_715412.1
            ProteinModelPortal:Q5A0Z3 STRING:Q5A0Z3 GeneID:3642908
            KEGG:cal:CaO19.3103 Uniprot:Q5A0Z3
        Length = 1448

 Score = 2049 (726.3 bits), Expect = 1.4e-300, Sum P(2) = 1.4e-300
 Identities = 422/851 (49%), Positives = 567/851 (66%)

Query:     1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHDR 55
             +R P ++ LR+  ++K I+++C     K  +C +C +ING+VKKA      A L I+HD 
Sbjct:   127 LRKPHIDNLRRMKIIKKIIEQCK----KQRRCLKCNHINGVVKKAASGAGPAALKIVHDT 182

Query:    56 SK---VTESLQ------EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
              +     E+L+      E         E +         LNP+  L LFK++T  DCE+ 
Sbjct:   183 FRWIGKKETLEKTIWDEELDQVFIRNPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELF 242

Query:   107 YLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
              L      RPE  I   +  PP+ IRPSV+MD SQSNE+D+T +L  I+ T++ ++  +V
Sbjct:   243 GLDPAKGGRPEMYIWRYLPAPPVCIRPSVMMD-SQSNEDDLTVKLTEIVWTSSMIRAGIV 301

Query:   163 EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM-----QVARPLSGFVQRLKGKQGRFR 217
             +  S    +  W+ LQ+ VA YINSD      S      + ++P+  F QRLKGKQGRFR
Sbjct:   302 KGISINNLMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFR 361

Query:   218 GNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPD 277
             GNLSGKRV+++GRTVISPDPNLKI EVA+P R+A++LTYPE+ + +N +KL++ + NGPD
Sbjct:   362 GNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPD 421

Query:   278 KYPGARMIRYPD--GTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMS 335
              +PGA  +   +  G   + +G  R +LA  L+ G +V+RH+EDGDVVLFNRQPSLHR+S
Sbjct:   422 IHPGANYVMKQNEPGKRNLRFGD-RVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRLS 480

Query:   336 IMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTP 395
             I+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TP
Sbjct:   481 ILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTP 540

Query:   396 KNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELW 455
             K+GE ++A+TQDF+T S+LI+ KD+F+DRA    +   M D   + D+P P I KPV LW
Sbjct:   541 KSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTIFKPVMLW 600

Query:   456 TGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSE 515
             TGKQ+FS+LI+P+    V +NL  K KT+       +G   +  E M PNDGFV  R S+
Sbjct:   601 TGKQVFSLLIKPNKKSNVVINLDAKNKTFHPP---KKG---LPNE-MSPNDGFVVIRGSK 653

Query:   516 LISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQ 575
             ++SG + K+TLG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI+DV 
Sbjct:   654 ILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGINDVT 713

Query:   576 PKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAG 635
             P  EL  KK  ++ + Y  C+  I  YN GKL+ +PGC+  QTLEA I  +L+++RE+ G
Sbjct:   714 PADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVG 773

Query:   636 KACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRK 695
               C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF + 
Sbjct:   774 DVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKN 833

Query:   696 AKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI 755
             +K P +KGFV NSF+SGL+  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS 
Sbjct:   834 SKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSS 893

Query:   756 QYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQ 815
             QYDN+VRN+   IVQF YG DG+DP +MEG + +P+NF+R                L P 
Sbjct:   894 QYDNTVRNSSNGIVQFTYGGDGLDPYDMEGDA-KPVNFNRQWDHAYNLTYNVDDASLLPY 952

Query:   816 QVSEIVEKQLA 826
             Q+ E+V+  LA
Sbjct:   953 QIEELVDSVLA 963

 Score = 860 (307.8 bits), Expect = 1.4e-300, Sum P(2) = 1.4e-300
 Identities = 193/393 (49%), Positives = 247/393 (62%)

Query:   866 DKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTL 925
             D+  +  +   + S I+ K ++ F++ C  +Y   RVE GTA+GAIGAQSIGEPGTQMTL
Sbjct:  1039 DEDAVKVKAIDQLSKISSKAVKTFLEQCLYKYSRARVEPGTAVGAIGAQSIGEPGTQMTL 1098

Query:   926 KTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLL 985
             KTFHFAGVASMN+T GVPRIKEIIN +K ISTPII A L  +D+E AARV KGRIEKTLL
Sbjct:  1099 KTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVNDDDEIAARVAKGRIEKTLL 1158

Query:   986 GQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLD 1045
               VA  I+ V    LA + I +D+ETI    L +N + +  +I   PK+K+ Q  + V  
Sbjct:  1159 EDVAFYIEDVYKDNLAYLSIKIDLETIDKLQLELNLENIAVAIANAPKLKIAQSDVSVTG 1218

Query:  1046 FRKLEIFPPVDKSK-------------IHFELYSLKNVLPMVIVKGIKTXXXXXXXXXXX 1092
               ++ +   + ++K             + F +  LK  LP V +KG+             
Sbjct:  1219 KDRINVLVNIKETKTESLRNTVDPKNALFFRMQYLKRALPGVCIKGLPNIFRAVINIKDD 1278

Query:  1093 XXXXXXXXXXXXXYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIID 1152
                            LLVEG GL+ VM  EGI G KT +NH+ EV Q LGIEAAR  II 
Sbjct:  1279 GKK-----------ELLVEGYGLKDVMNTEGIVGTKTTTNHVLEVNQILGIEAARGSIIK 1327

Query:  1153 EINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLF 1212
             EI+ TM  HGMS+D RH+ LL D+MT++GEVLGITRFG+ KM  SVL LASFEKT DHLF
Sbjct:  1328 EIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLF 1387

Query:  1213 NASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             +A+   ++D+IEGVSECII+G  M +GTG  K+
Sbjct:  1388 DAAFFMKNDKIEGVSECIILGQTMSIGTGSFKL 1420


>POMBASE|SPBC651.08c [details] [associations]
            symbol:rpc1 "DNA-directed RNA polymerase III complex
            large subunit Rpc1 (predicted)" species:4896 "Schizosaccharomyces
            pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=ISO] [GO:0005666
            "DNA-directed RNA polymerase III complex" evidence=ISO] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006383 "transcription from RNA
            polymerase III promoter" evidence=ISO] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
            PomBase:SPBC651.08c GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
            EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 GO:GO:0005666
            GO:GO:0003899 KO:K03018 OrthoDB:EOG4X3M8C eggNOG:COG0086
            GO:GO:0032549 HOGENOM:HOG000222974 OMA:PRRPLIF
            PANTHER:PTHR19376:SF15 EMBL:DQ156227 PIR:T40607 RefSeq:NP_595506.1
            ProteinModelPortal:O94666 STRING:O94666 EnsemblFungi:SPBC651.08c.1
            GeneID:2541094 KEGG:spo:SPBC651.08c NextBio:20802207 Uniprot:O94666
        Length = 1405

 Score = 2863 (1012.9 bits), Expect = 3.0e-298, P = 3.0e-298
 Identities = 607/1281 (47%), Positives = 829/1281 (64%)

Query:     1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             +R P ++ LR++ + K I   C  M     +C +C  + G+VKKA   L IIH+R +   
Sbjct:   126 LRRPGIDNLRRSQICKRINDHCKKMR----RCSKCDAMQGVVKKA-GPLKIIHERFRYVR 180

Query:    61 SLQE--------FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
               Q+        F  A+    E K  ++ A   LNP+ VL LFK++T  DCE+L +    
Sbjct:   181 KSQDDEENFRHSFDEALKTIPELKMHLSKAHDDLNPLKVLNLFKQITPVDCELLGMDPEH 240

Query:   111 -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
              RPE L+   +  PP+ IRPSV  +G+ + E+D+T ++  II T++ ++  L +      
Sbjct:   241 GRPENLLWRYVPAPPVCIRPSVAQEGA-TTEDDLTVKITEIIWTSSLIRAALSKGTPISN 299

Query:   170 SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
              +  WE +Q+ +A YINS++ G+  S   ++P+ GF QRLKGKQGRFRGNLSGKRV+++G
Sbjct:   300 LMEQWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 359

Query:   230 RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYP 288
             RTVISPDPNL+I +VA+P R+A+ILT+PERV+  N + L+ CI+NGPD +PGA  +I   
Sbjct:   360 RTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVIDRE 419

Query:   289 DGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
              G  R L +G  RN++A +LK G IV+RHL D DVVLFNRQPSLH++SIM H  ++ PWR
Sbjct:   420 SGFKRFLRFGN-RNRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHLVKVRPWR 478

Query:   348 TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQD 407
             TLRFNE VC PYNADFDGDEMN+HVPQTEEA+TEAL LMG++NNL +P+NGE ++A+TQD
Sbjct:   479 TLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGEPIIAATQD 538

Query:   408 FLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRP 467
             F+T+++L++ KDTF DR + S +CCYM D    +DLP PAI+KP  LWTGKQ+F+VL++P
Sbjct:   539 FITAAYLLSLKDTFLDRKSISNICCYMMDASTHIDLPPPAIIKPRCLWTGKQVFTVLMKP 598

Query:   468 HANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLG 527
             +   +V VNL  K +++S   I+++  E      MCP DG++  RNSE+I+G + K+ +G
Sbjct:   599 NRFSKVLVNLDAKTRSFSR--IKSKTPE------MCPKDGYLMIRNSEIIAGVVDKSVVG 650

Query:   528 NGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKL 587
             +G KD L+ V+LRDYGA   +  + RL+K+ AR++GN GFSIGI+DVQP K LS +K  L
Sbjct:   651 DGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIEDVQPGKSLSSQKEIL 710

Query:   588 ISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNS 647
             +++ Y   +  I +Y +G L+ +PG D   TLEA I+  L+++R+D G+ CM  L   NS
Sbjct:   711 VNKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISSTLSKVRDDVGEICMDELGPANS 770

Query:   648 PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVAN 707
             PLIM+ CGSKGS IN+SQMVACVGQQ + G+R P+GF DRSLPHF + +K P AKGFV+N
Sbjct:   771 PLIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHFHKNSKHPLAKGFVSN 830

Query:   708 SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
             SFYSGL+ TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS  YD +VR++   
Sbjct:   831 SFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAYDGTVRSSNSD 890

Query:   768 IVQFLYGDDGMDPANMEGKSGEPLNFDRL-LMKVKATCPPAGQRYLSPQQVSEIVEKQLA 826
             +VQF+YGDDG+DP  MEG  G+ + F R  +  V           L P ++ + V + L 
Sbjct:   891 VVQFVYGDDGLDPTYMEG-DGQAVEFKRTWIHSVNLNYDRHDSAML-PYEIIDYVNRALD 948

Query:   827 -AYGKESCSEAFLNSLR--------KFFEGQQDKLDKKIKFVEDIGWDDKSQI----LEE 873
                   +C+  F+ ++R        K+    +++ D     +E+   DD   +       
Sbjct:   949 DPKFLTNCNRDFIETIRTFVIENIAKYLASVRERRDLA-PMLEEPDMDDLDDMEGDEFAP 1007

Query:   874 VTHKTS-----GITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTF 928
             V  + S      +TEKQL  F+  C+ +Y   +VE GTA+GAIGAQSIGEPGTQMTLKTF
Sbjct:  1008 VAKRKSVENIIRVTEKQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTF 1067

Query:   929 HFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQV 988
             HFAGVA+   T GVPRIKEIIN AK ISTPIIT +L  + +E +ARVVKGRIEKT L  V
Sbjct:  1068 HFAGVAAQT-TLGVPRIKEIINAAKTISTPIITGQLINDRDERSARVVKGRIEKTYLKDV 1126

Query:   989 AKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLD-FR 1047
                I+ V       + I ++ +TI    L I    +  +I  TPK+K+  Q + V +  +
Sbjct:  1127 TSYIEEVYGPVTTYLSIQVNFDTISKLQLDITLADIAAAIWNTPKLKIPSQQVTVNNTLQ 1186

Query:  1048 KLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTXXXXXXXXXXXXXXXXXXXXXXXXYR 1107
             ++ +    D      E+Y        V+   +                            
Sbjct:  1187 QIHVHTSSDGKSSETEVYYRLQTYKRVLPDVV--------VAGIPTINRSVINQESGKIE 1238

Query:  1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
             L +EGTGLQAVM  EGI G KT +NH+ E++  LGIEAAR  II EI  TM  HG+++D 
Sbjct:  1239 LFMEGTGLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVDP 1298

Query:  1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
             RH+MLL D+MT +GEVLGITRFG+ KM  SVL LASFEKT DHLFNA+     D IEG+S
Sbjct:  1299 RHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLALASFEKTTDHLFNAAARFAKDSIEGIS 1358

Query:  1228 ECIIMGIPMPLGTGILKIRQR 1248
             ECI++G   P+GT + ++ +R
Sbjct:  1359 ECIVLGKLAPIGTNVFQLIRR 1379


>WB|WBGene00004411 [details] [associations]
            symbol:rpc-1 species:6239 "Caenorhabditis elegans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032549
            "ribonucleoside binding" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
            GO:GO:0008270 GO:GO:0006351 GO:GO:0040035 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 KO:K03018 eggNOG:COG0086
            HSSP:P04050 GO:GO:0032549 GeneTree:ENSGT00700000104490
            HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
            EMBL:FO080771 PIR:T34157 RefSeq:NP_501127.2
            ProteinModelPortal:Q18566 SMR:Q18566 STRING:Q18566 PaxDb:Q18566
            EnsemblMetazoa:C42D4.8 GeneID:177491 KEGG:cel:CELE_C42D4.8
            UCSC:C42D4.8 CTD:177491 WormBase:C42D4.8 InParanoid:Q18566
            NextBio:897062 Uniprot:Q18566
        Length = 1400

 Score = 2672 (945.6 bits), Expect = 5.3e-278, P = 5.3e-278
 Identities = 596/1291 (46%), Positives = 809/1291 (62%)

Query:     3 NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-AVLGIIHDRSKVTES 61
             NP ++ L +  L K IV  C     K   C  CG  NG VKKAV AVL I        + 
Sbjct:   132 NPNLDYLHRKALHKRIVAACK----KGSTCSHCGLKNGTVKKAVGAVLKIAFASPVSVDE 187

Query:    62 LQEFASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYL----SERPEKLI 116
             L +FA+  +  +E    V    + +LNP+ V  LF  + + D  VL +     + P  L+
Sbjct:   188 LGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLL 247

Query:   117 ITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWE 175
             +T + VPP+ IRPSV+ +  + + E+D+T +L  I+ TN  L++   +   +      WE
Sbjct:   248 LTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWE 307

Query:   176 TLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISP 235
              LQ++ A YINS++ G+P  MQ  R +  F QRLKGKQGRFRGNL GKRV+++GRTVISP
Sbjct:   308 HLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISP 367

Query:   236 DPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARV 294
             DPNL+I +V +PI +A  LT+PE V+  NIEK+RQ + NG D +PGA  ++    G  ++
Sbjct:   368 DPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKL 427

Query:   295 L-YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNE 353
             L YGK R++LA  L+ G  ++RHL+D DVVLFNRQPSLH++SIM HRA++MP RT RFNE
Sbjct:   428 LKYGK-RDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNE 486

Query:   354 SVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSF 413
               C PYNADFDGDEMN+H+PQT EA+ EA  LM V+NNL TP++GE LVA+ QDF+T  +
Sbjct:   487 CACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGY 546

Query:   414 LITRKDTFYDRAAFSLMCCYMGDG----MDRVDLPTPAILKPVELWTGKQLFSVLIRPHA 469
             L+T KDTF  RA        + D       ++ +P PAI +PVELWTGKQL  ++IRP  
Sbjct:   547 LLTHKDTFLPRAEVYRFAAALIDASAKKQTKIRIPPPAIRRPVELWTGKQLIELIIRPDK 606

Query:   470 NMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNG 529
                V +NLT K K+Y+  L             +C  D +V  RNS L++G L K+ LG+ 
Sbjct:   607 GSDVSLNLTAKNKSYTGNL------------ELCSKDSYVIIRNSVLLAGCLDKSLLGSS 654

Query:   530 NKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLIS 589
             +K  ++ +L+RDYG  A    M RLA+++  ++ N GFSIGI DV+P ++L  +KG+L+ 
Sbjct:   655 SKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVD 714

Query:   590 ENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPL 649
               Y  C+  IKE  EGKL+ +PGC   +TLE++I   L+ IR+ AG+ C+ +L   N+PL
Sbjct:   715 NGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPL 774

Query:   650 IMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSF 709
              M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF RK K P AKGFVANSF
Sbjct:   775 TMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSF 834

Query:   710 YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIV 769
             YSGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K LEDL   YD +VR++ G ++
Sbjct:   835 YSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVI 894

Query:   770 QFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAY- 828
             +F++G+DG+DPA ME K G  ++F  +L   K       ++ +   ++ E+++ ++    
Sbjct:   895 EFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAK-NIQTTKEQPIPVDKLDEVLKAEIQKKF 953

Query:   829 -GK-----ESCSEAFLNS-LRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEV-THKTS- 879
              GK     +  SE    + ++K  + Q  K         D+   +  +I + +  +KTS 
Sbjct:   954 KGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSL 1013

Query:   880 ----GITEKQLEVFIQTCFSRYRVKRV--EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGV 933
                  +T+ QL  FI+ C+  Y+V R   E GTA+GAI A SIGEP TQMTLKTFHFAGV
Sbjct:  1014 LANSCLTKTQLCSFIELCY--YKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGV 1071

Query:   934 ASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIK 993
             ASMNITQGVPRIKEIIN  K ISTPIITA L    +E+ AR VK RIEKT LG++   I+
Sbjct:  1072 ASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIE 1131

Query:   994 IVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRK--LEI 1051
              V       +++ L+ + I+   L +  + +  +I  T K+  + +  K++   K  + I
Sbjct:  1132 EVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAIA-TSKVCPQMRGCKIVAHGKTMMAI 1190

Query:  1052 FPPVDKSKIH--FELYSLKNVLPMVIVKGIKTXXXXXXXXXXXXXXXXXXXXXXXXYRLL 1109
              PP   SK+     +  LK  L  V+VKGI +                        Y LL
Sbjct:  1191 RPP-STSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDF---------YSLL 1240

Query:  1110 VEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRH 1169
             VEGT  ++V+ + G+D  KT  N+   V   LGIEAAR CII+EI  TM AHG+ +D+RH
Sbjct:  1241 VEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRH 1300

Query:  1170 MMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSEC 1229
             +MLLAD+MT+RGEVLGITR G+ KM  SVL+LASFEKT DHLF A+   + D I GVSEC
Sbjct:  1301 VMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSEC 1360

Query:  1230 IIMGIPMPLGTGILKIRQRDAVPPMLKYGAP 1260
             IIMG PM +GTG  K+ Q+     +LK  +P
Sbjct:  1361 IIMGTPMTVGTGTFKLMQKYDKKAVLKQNSP 1391


>GENEDB_PFALCIPARUM|PF13_0150 [details] [associations]
            symbol:PF13_0150 "DNA-directed RNA polymerase 3
            largest subunit" species:5833 "Plasmodium falciparum" [GO:0005666
            "DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
            "transcription from RNA polymerase III promoter" evidence=ISS]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
            GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
            HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
            ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
            GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
            Uniprot:Q8IE49
        Length = 2356

 Score = 1439 (511.6 bits), Expect = 8.9e-266, Sum P(5) = 8.9e-266
 Identities = 278/497 (55%), Positives = 361/497 (72%)

Query:   300 RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
             +N +   L  G +V+RH+ DGD+VLFNRQPSLHRMSIMCH+A+IM ++T RFNE VC+PY
Sbjct:   549 KNHVIQNLNIGDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIMDFKTFRFNECVCSPY 608

Query:   360 NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
             NADFDGDEMN+HVPQTEEAR EAL LM V++NL TPKNGE+++A TQDFL++S++IT KD
Sbjct:   609 NADFDGDEMNLHVPQTEEARAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKD 668

Query:   420 TFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTV 479
             TF DR  F L+C Y  D    ++LP PAILKP ELWTGKQL SVLI+P+      +N  +
Sbjct:   669 TFLDRDTFCLLCSYFSDASLYIELPIPAILKPKELWTGKQLISVLIKPNKKENTIINFEI 728

Query:   480 KEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLL 539
             +E+ YSNK     GD    ++ +C ND +V F  SELI G LGK  LG+ +K GL+  L+
Sbjct:   729 QEREYSNKF----GD----LKHLCLNDSYVCFYKSELICGSLGKKVLGS-SKYGLFYYLI 779

Query:   540 RDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKI 599
                 +H     MNRL+KL++R+  N G +IGIDDV+P + L++KK  L+ + YE  N +I
Sbjct:   780 HHNSSHIALKIMNRLSKLTSRYFSNKGMTIGIDDVRPSQTLTEKKKDLLLKGYEKVNNEI 839

Query:   600 KEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGS 659
               YNE K+Q++PGC   +TLE  +  IL+ +R DAGK C   L + N PLIM   G+KG+
Sbjct:   840 ILYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCNQYLHYLNKPLIMFNSGAKGA 899

Query:   660 PINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFF 719
              INI+QM+ACVGQQ+V G+R  NGFI+R+LPHF    K+  ++GFV NSFY+GLS TEFF
Sbjct:   900 LINIAQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFF 959

Query:   720 FHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
             FHTM GREGLVDTAVKTA+TGYM RRL+KALEDLSI YD SVR+    IVQF+YGDD ++
Sbjct:   960 FHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSCDKQIVQFIYGDDALN 1019

Query:   780 PANMEGKSGEPLNFDRL 796
             P+ ++  +     FD++
Sbjct:  1020 PSYIDNNNTYLDQFDKV 1036

 Score = 446 (162.1 bits), Expect = 8.9e-266, Sum P(5) = 8.9e-266
 Identities = 113/284 (39%), Positives = 159/284 (55%)

Query:     7 EALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFA 66
             ++  K  L K I+  C     K  KC  CG   G++KK +              SL +F 
Sbjct:   154 DSFYKKHLFKRILNNCK----KVNKCYICGNPQGVIKKIIK------------PSLDQFM 197

Query:    67 SA--ITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPP 124
                 I   KE+   + +    LN + VL LFK +     ++L + E PEKLIIT + VPP
Sbjct:   198 KLKHILKVKENGKMI-IKEEDLNSLYVLKLFKNINPYHVKLLNI-ENPEKLIITALLVPP 255

Query:   125 IAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQY 184
               IRPSVI+D   + E+D+T  L  I Q N ++  +        + L   E LQ+++ ++
Sbjct:   256 NTIRPSVIIDEHGTAEDDLTCILSEITQLNNTIYNQCTNGYQTNQFLGNVEFLQLQITRF 315

Query:   185 INSDVRGVP---FSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKI 241
             INSD   V     +  +++P  G  QRLKGK+GRFR NLSGKRV+++ RTVISPDPN+ I
Sbjct:   316 INSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRTVISPDPNISI 375

Query:   242 TEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI 285
              EV IP  +A  LTYPE V+ +NI+KL+  I+NG +K+PGA  I
Sbjct:   376 DEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPGANYI 419

 Score = 389 (142.0 bits), Expect = 8.9e-266, Sum P(5) = 8.9e-266
 Identities = 98/212 (46%), Positives = 131/212 (61%)

Query:   874 VTHKTSGITEKQLEVFIQTCFSRYRV-KRVEA-GTAIGAIGAQSIGEPGTQMTLKTFHFA 931
             + H  S I  KQL +FI   F+ Y+  K +   G A+G+I AQSIGEPGTQMTLKTFHFA
Sbjct:  1760 IIHDYSFINLKQLYLFI--FFNIYKYFKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFA 1817

Query:   932 GVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKS 991
             GVASMN+T GVPRIKEIIN +  I TPI+   LE NDN N A ++K ++EKT +  +   
Sbjct:  1818 GVASMNVTLGVPRIKEIINASNSIQTPILNIPLEVNDNYNFALMMKSKLEKTTIRDICMY 1877

Query:   992 IKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTP---KIKLKQQHIKVLDFRK 1048
             IK   TSR   + +  + E IQ   L INA  +K+ I++     KIK+ + HI V++  K
Sbjct:  1878 IKEDYTSRGVFLSVKFNEELIQKLFLNINAYNIKDIILKQSHINKIKINKIHINVINKYK 1937

Query:  1049 LEIFPPVDKSKIHFELYSLKNVLPMVIVKGIK 1080
             L I    D+  I F++ SLK  L  +++ G K
Sbjct:  1938 LHISLKNDEF-IFFQMESLKKGLLDLLIYGDK 1968

 Score = 361 (132.1 bits), Expect = 8.9e-266, Sum P(5) = 8.9e-266
 Identities = 74/140 (52%), Positives = 98/140 (70%)

Query:  1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
             Y +LVEG  L  V+G EG+D     SNH+  V Q LGIEAARI II+EI + ++A+ + I
Sbjct:  2190 YSILVEGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSIDI 2249

Query:  1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
             D RH+MLLAD+M F G++LGI RFGIQK  +S LMLASFE+T +HLF +S     D I  
Sbjct:  2250 DIRHIMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEINN 2309

Query:  1226 VSECIIMGIPMPLGTGILKI 1245
             +SE II+G  +P+GTG  ++
Sbjct:  2310 ISESIIVGKNIPIGTGAFQL 2329

 Score = 43 (20.2 bits), Expect = 2.4e-229, Sum P(5) = 2.4e-229
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query:   963 ELECN---DNENAARVVKGRIEKTL 984
             E +CN   +N+NA RV K  I+  L
Sbjct:  2007 ERKCNSKEENKNAIRVKKEEIDDNL 2031

 Score = 43 (20.2 bits), Expect = 1.5e-60, Sum P(4) = 1.5e-60
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query:    25 MASKAVKCPRCGYINGMVKKAVAVLGIIHDRS 56
             +   AVK    GY+   + KA+  L I +D S
Sbjct:   969 LVDTAVKTAETGYMQRRLMKALEDLSIHYDYS 1000

 Score = 41 (19.5 bits), Expect = 4.7e-67, Sum P(4) = 4.7e-67
 Identities = 16/68 (23%), Positives = 31/68 (45%)

Query:   470 NMRVY-VNLTVKEKTYSNKL----IRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKA 524
             N+  Y +   + ++++ NK+    I      + ++     ND F++F+   L  G L   
Sbjct:  1904 NINAYNIKDIILKQSHINKIKINKIHINVINKYKLHISLKNDEFIFFQMESLKKGLLD-- 1961

Query:   525 TLGNGNKD 532
              L  G+KD
Sbjct:  1962 LLIYGDKD 1969

 Score = 38 (18.4 bits), Expect = 8.9e-266, Sum P(5) = 8.9e-266
 Identities = 26/124 (20%), Positives = 48/124 (38%)

Query:   750 LEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQ 809
             +E  + QYDN   N   C        + +   N+E    + +N D   +K     PP   
Sbjct:  1366 IEYNNTQYDNIQYNNISC--------NYIKSQNLENTHHQ-VNNDLSFIKNNVILPPKEY 1416

Query:   810 RYLSP--QQVSEIVE-KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDD 866
               +         +VE K L    K   + +  N ++  +      L KKI+ + +I  ++
Sbjct:  1417 HSIFHFVNDYRNVVEIKNLMDKKKIFLNNSEKNVVQSKYNRMSKNLKKKIEIINNIYRNE 1476

Query:   867 KSQI 870
             K ++
Sbjct:  1477 KKKL 1480

 Score = 38 (18.4 bits), Expect = 6.6e-103, Sum P(4) = 6.6e-103
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query:   743 SRRLIKALEDLSIQYDNSVRNAG--GC 767
             S++ I    D+S  Y+N+  N    GC
Sbjct:   423 SKKGIDPYSDISTSYNNNSNNISSIGC 449

 Score = 37 (18.1 bits), Expect = 4.0e-66, Sum P(4) = 4.0e-66
 Identities = 11/54 (20%), Positives = 25/54 (46%)

Query:   969 NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINAD 1022
             N +  +  + R E   L  V  ++   +T +   ++IAL  + +  +++  N D
Sbjct:   618 NLHVPQTEEARAEALYLMNVKHNL---ITPKNGEVIIALTQDFLSASYIITNKD 668

 Score = 37 (18.1 bits), Expect = 2.6e-61, Sum P(3) = 2.6e-61
 Identities = 13/65 (20%), Positives = 25/65 (38%)

Query:   729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPAN-----M 783
             L +T       GY + + +  +E L +Q    + +    + Q L   +   P       +
Sbjct:   284 LNNTIYNQCTNGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQNISKPGRGICQRL 343

Query:   784 EGKSG 788
             +GK G
Sbjct:   344 KGKEG 348


>UNIPROTKB|Q8IE49 [details] [associations]
            symbol:PF13_0150 "DNA-directed RNA polymerase"
            species:36329 "Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed
            RNA polymerase III complex" evidence=ISS] [GO:0006383
            "transcription from RNA polymerase III promoter" evidence=ISS]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
            GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
            HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
            ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
            GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
            Uniprot:Q8IE49
        Length = 2356

 Score = 1439 (511.6 bits), Expect = 8.9e-266, Sum P(5) = 8.9e-266
 Identities = 278/497 (55%), Positives = 361/497 (72%)

Query:   300 RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
             +N +   L  G +V+RH+ DGD+VLFNRQPSLHRMSIMCH+A+IM ++T RFNE VC+PY
Sbjct:   549 KNHVIQNLNIGDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIMDFKTFRFNECVCSPY 608

Query:   360 NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
             NADFDGDEMN+HVPQTEEAR EAL LM V++NL TPKNGE+++A TQDFL++S++IT KD
Sbjct:   609 NADFDGDEMNLHVPQTEEARAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKD 668

Query:   420 TFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTV 479
             TF DR  F L+C Y  D    ++LP PAILKP ELWTGKQL SVLI+P+      +N  +
Sbjct:   669 TFLDRDTFCLLCSYFSDASLYIELPIPAILKPKELWTGKQLISVLIKPNKKENTIINFEI 728

Query:   480 KEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLL 539
             +E+ YSNK     GD    ++ +C ND +V F  SELI G LGK  LG+ +K GL+  L+
Sbjct:   729 QEREYSNKF----GD----LKHLCLNDSYVCFYKSELICGSLGKKVLGS-SKYGLFYYLI 779

Query:   540 RDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKI 599
                 +H     MNRL+KL++R+  N G +IGIDDV+P + L++KK  L+ + YE  N +I
Sbjct:   780 HHNSSHIALKIMNRLSKLTSRYFSNKGMTIGIDDVRPSQTLTEKKKDLLLKGYEKVNNEI 839

Query:   600 KEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGS 659
               YNE K+Q++PGC   +TLE  +  IL+ +R DAGK C   L + N PLIM   G+KG+
Sbjct:   840 ILYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCNQYLHYLNKPLIMFNSGAKGA 899

Query:   660 PINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFF 719
              INI+QM+ACVGQQ+V G+R  NGFI+R+LPHF    K+  ++GFV NSFY+GLS TEFF
Sbjct:   900 LINIAQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFF 959

Query:   720 FHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
             FHTM GREGLVDTAVKTA+TGYM RRL+KALEDLSI YD SVR+    IVQF+YGDD ++
Sbjct:   960 FHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSCDKQIVQFIYGDDALN 1019

Query:   780 PANMEGKSGEPLNFDRL 796
             P+ ++  +     FD++
Sbjct:  1020 PSYIDNNNTYLDQFDKV 1036

 Score = 446 (162.1 bits), Expect = 8.9e-266, Sum P(5) = 8.9e-266
 Identities = 113/284 (39%), Positives = 159/284 (55%)

Query:     7 EALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFA 66
             ++  K  L K I+  C     K  KC  CG   G++KK +              SL +F 
Sbjct:   154 DSFYKKHLFKRILNNCK----KVNKCYICGNPQGVIKKIIK------------PSLDQFM 197

Query:    67 SA--ITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPP 124
                 I   KE+   + +    LN + VL LFK +     ++L + E PEKLIIT + VPP
Sbjct:   198 KLKHILKVKENGKMI-IKEEDLNSLYVLKLFKNINPYHVKLLNI-ENPEKLIITALLVPP 255

Query:   125 IAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQY 184
               IRPSVI+D   + E+D+T  L  I Q N ++  +        + L   E LQ+++ ++
Sbjct:   256 NTIRPSVIIDEHGTAEDDLTCILSEITQLNNTIYNQCTNGYQTNQFLGNVEFLQLQITRF 315

Query:   185 INSDVRGVP---FSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKI 241
             INSD   V     +  +++P  G  QRLKGK+GRFR NLSGKRV+++ RTVISPDPN+ I
Sbjct:   316 INSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRTVISPDPNISI 375

Query:   242 TEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI 285
              EV IP  +A  LTYPE V+ +NI+KL+  I+NG +K+PGA  I
Sbjct:   376 DEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPGANYI 419

 Score = 389 (142.0 bits), Expect = 8.9e-266, Sum P(5) = 8.9e-266
 Identities = 98/212 (46%), Positives = 131/212 (61%)

Query:   874 VTHKTSGITEKQLEVFIQTCFSRYRV-KRVEA-GTAIGAIGAQSIGEPGTQMTLKTFHFA 931
             + H  S I  KQL +FI   F+ Y+  K +   G A+G+I AQSIGEPGTQMTLKTFHFA
Sbjct:  1760 IIHDYSFINLKQLYLFI--FFNIYKYFKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFA 1817

Query:   932 GVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKS 991
             GVASMN+T GVPRIKEIIN +  I TPI+   LE NDN N A ++K ++EKT +  +   
Sbjct:  1818 GVASMNVTLGVPRIKEIINASNSIQTPILNIPLEVNDNYNFALMMKSKLEKTTIRDICMY 1877

Query:   992 IKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTP---KIKLKQQHIKVLDFRK 1048
             IK   TSR   + +  + E IQ   L INA  +K+ I++     KIK+ + HI V++  K
Sbjct:  1878 IKEDYTSRGVFLSVKFNEELIQKLFLNINAYNIKDIILKQSHINKIKINKIHINVINKYK 1937

Query:  1049 LEIFPPVDKSKIHFELYSLKNVLPMVIVKGIK 1080
             L I    D+  I F++ SLK  L  +++ G K
Sbjct:  1938 LHISLKNDEF-IFFQMESLKKGLLDLLIYGDK 1968

 Score = 361 (132.1 bits), Expect = 8.9e-266, Sum P(5) = 8.9e-266
 Identities = 74/140 (52%), Positives = 98/140 (70%)

Query:  1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
             Y +LVEG  L  V+G EG+D     SNH+  V Q LGIEAARI II+EI + ++A+ + I
Sbjct:  2190 YSILVEGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSIDI 2249

Query:  1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
             D RH+MLLAD+M F G++LGI RFGIQK  +S LMLASFE+T +HLF +S     D I  
Sbjct:  2250 DIRHIMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEINN 2309

Query:  1226 VSECIIMGIPMPLGTGILKI 1245
             +SE II+G  +P+GTG  ++
Sbjct:  2310 ISESIIVGKNIPIGTGAFQL 2329

 Score = 43 (20.2 bits), Expect = 2.4e-229, Sum P(5) = 2.4e-229
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query:   963 ELECN---DNENAARVVKGRIEKTL 984
             E +CN   +N+NA RV K  I+  L
Sbjct:  2007 ERKCNSKEENKNAIRVKKEEIDDNL 2031

 Score = 43 (20.2 bits), Expect = 1.5e-60, Sum P(4) = 1.5e-60
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query:    25 MASKAVKCPRCGYINGMVKKAVAVLGIIHDRS 56
             +   AVK    GY+   + KA+  L I +D S
Sbjct:   969 LVDTAVKTAETGYMQRRLMKALEDLSIHYDYS 1000

 Score = 41 (19.5 bits), Expect = 4.7e-67, Sum P(4) = 4.7e-67
 Identities = 16/68 (23%), Positives = 31/68 (45%)

Query:   470 NMRVY-VNLTVKEKTYSNKL----IRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKA 524
             N+  Y +   + ++++ NK+    I      + ++     ND F++F+   L  G L   
Sbjct:  1904 NINAYNIKDIILKQSHINKIKINKIHINVINKYKLHISLKNDEFIFFQMESLKKGLLD-- 1961

Query:   525 TLGNGNKD 532
              L  G+KD
Sbjct:  1962 LLIYGDKD 1969

 Score = 38 (18.4 bits), Expect = 8.9e-266, Sum P(5) = 8.9e-266
 Identities = 26/124 (20%), Positives = 48/124 (38%)

Query:   750 LEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQ 809
             +E  + QYDN   N   C        + +   N+E    + +N D   +K     PP   
Sbjct:  1366 IEYNNTQYDNIQYNNISC--------NYIKSQNLENTHHQ-VNNDLSFIKNNVILPPKEY 1416

Query:   810 RYLSP--QQVSEIVE-KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDD 866
               +         +VE K L    K   + +  N ++  +      L KKI+ + +I  ++
Sbjct:  1417 HSIFHFVNDYRNVVEIKNLMDKKKIFLNNSEKNVVQSKYNRMSKNLKKKIEIINNIYRNE 1476

Query:   867 KSQI 870
             K ++
Sbjct:  1477 KKKL 1480

 Score = 38 (18.4 bits), Expect = 6.6e-103, Sum P(4) = 6.6e-103
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query:   743 SRRLIKALEDLSIQYDNSVRNAG--GC 767
             S++ I    D+S  Y+N+  N    GC
Sbjct:   423 SKKGIDPYSDISTSYNNNSNNISSIGC 449

 Score = 37 (18.1 bits), Expect = 4.0e-66, Sum P(4) = 4.0e-66
 Identities = 11/54 (20%), Positives = 25/54 (46%)

Query:   969 NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINAD 1022
             N +  +  + R E   L  V  ++   +T +   ++IAL  + +  +++  N D
Sbjct:   618 NLHVPQTEEARAEALYLMNVKHNL---ITPKNGEVIIALTQDFLSASYIITNKD 668

 Score = 37 (18.1 bits), Expect = 2.6e-61, Sum P(3) = 2.6e-61
 Identities = 13/65 (20%), Positives = 25/65 (38%)

Query:   729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPAN-----M 783
             L +T       GY + + +  +E L +Q    + +    + Q L   +   P       +
Sbjct:   284 LNNTIYNQCTNGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQNISKPGRGICQRL 343

Query:   784 EGKSG 788
             +GK G
Sbjct:   344 KGKEG 348


>FB|FBgn0030687 [details] [associations]
            symbol:CG17209 species:7227 "Drosophila melanogaster"
            [GO:0006383 "transcription from RNA polymerase III promoter"
            evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
            evidence=ISS] [GO:0032549 "ribonucleoside binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
            GO:GO:0032549 GeneTree:ENSGT00700000104490 OMA:PRRPLIF
            PANTHER:PTHR19376:SF15 RefSeq:NP_001096987.2 UniGene:Dm.14839
            ProteinModelPortal:A8JUY3 SMR:A8JUY3 STRING:A8JUY3
            EnsemblMetazoa:FBtr0300811 GeneID:32524 KEGG:dme:Dmel_CG17209
            FlyBase:FBgn0030687 OrthoDB:EOG4BNZSM PhylomeDB:A8JUY3
            GenomeRNAi:32524 NextBio:778916 Bgee:A8JUY3 Uniprot:A8JUY3
        Length = 1383

 Score = 2283 (808.7 bits), Expect = 8.8e-237, P = 8.8e-237
 Identities = 497/1102 (45%), Positives = 697/1102 (63%)

Query:     1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
             + NP    L K  L   ++ K    A K  KCP CG  NG VKK   +L I+HD  K   
Sbjct:   127 LHNPNFSYLGKKALHVQMLAK----AKKVTKCPHCGSPNGGVKKGPGLLKILHDPYKGRK 182

Query:    58 ----VTESLQEFASAITHTKESKAAV-NVATYI-LNPVNVLFLFKRMTDTDCEVLYLSER 111
                  T ++ E   +    ++  + + N +T   L P+ VL LF+++   D  +L +   
Sbjct:   183 MDSLFTSNMNEMLRSTQTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSH 242

Query:   112 ---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
                P+ LI+T + VPP  IRPSV+ +  + + E+D+T +   I+  N  +Q+ +      
Sbjct:   243 DAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKI 302

Query:   168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                   W+ LQ+ VA Y +S++ G+P +M   +   G VQRLKGKQGRFR NLSGKRV++
Sbjct:   303 ELIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDF 362

Query:   228 TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY 287
             +GRTVISPDPNL I +V +P+R+A+ILTYPERV+  NI  +R+ ++NGP  +PGA  ++ 
Sbjct:   363 SGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQ 422

Query:   288 PDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
                + +  + YG  R ++A ELK G +V+RHL DGD+VLFNRQPSLH+MSIMCHRA++ P
Sbjct:   423 RGSSFKKYLAYGN-REKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQP 481

Query:   346 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
              RT RFNE  C PYNADFDGDEMN+H+PQTEEAR EAL+LMG Q+NL TPKNGEIL+A+T
Sbjct:   482 QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAAT 541

Query:   406 QDFLTSSFLITRKDTFYDRA-AFSLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS 462
             QDF+T  +L+T+K+ F  +  A  L  C++   D    + LP PA+LKP  LWTGKQ+FS
Sbjct:   542 QDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIKLPPPALLKPRRLWTGKQMFS 601

Query:   463 VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
             +L+RP+ + +V +N+  K + Y+            R + +C ND +++ RNSEL+ G + 
Sbjct:   602 LLMRPNDDSQVRLNMVNKGRNYT------------RNKDLCSNDSWIHIRNSELMCGVMD 649

Query:   523 KATLGNGNKDGLYSVLLRDYG-AHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELS 581
             KAT+G+G K  ++ +LLRD+G +HAT   M RLA++++ ++ N GFS GI DV P K+L 
Sbjct:   650 KATMGSGTKQCIFYLLLRDFGESHATKA-MWRLARIASYFLQNRGFSFGISDVTPSKKLL 708

Query:   582 DKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGS 641
               K  L++  Y  CN  I+    G LQ +PGC   +TLE+V+   L+ IRE A K C   
Sbjct:   709 QHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCFAE 768

Query:   642 LPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAA 701
             L   NS LIM+  GSKGS INISQM+ACVGQQ++ G+R PNGF +R+LPHF R +  PAA
Sbjct:   769 LHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIPAA 828

Query:   702 KGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSV 761
             +GFV NSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+K LEDL + YD +V
Sbjct:   829 RGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTV 888

Query:   762 RNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIV 821
             RNA   +V  +YG DG+DP +ME ++ +P++       ++A  P    R L+ +++SE +
Sbjct:   889 RNAVNEMVDTIYGGDGLDPVSMETRN-KPVDLVHQYDNLRAQHPQGKDRPLNAEEMSEAL 947

Query:   822 EKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGI 881
             E  L         + F   +R       + + K+I  ++      + +   ++ H+   +
Sbjct:   948 ETLLRTPEFAEARDDFKLDVRNHI----NTVSKRIGQLQK-----RYEKCIDLCHQIECL 998

Query:   882 TEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQG 941
             T +QL  F++    RY     E GTA+GAI AQSIGEPGTQMTLKTFHFAGVASMNITQG
Sbjct:   999 TTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQG 1058

Query:   942 VPRIKEIINGAKRISTPIITAELE-CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRL 1000
             VPRI EIIN  K ISTPIITAELE C+  E  AR VK RIEKT L +++  +++V     
Sbjct:  1059 VPRIVEIINATKTISTPIITAELENCHSME-FARQVKARIEKTTLAELSSYVEVVCGPYS 1117

Query:  1001 ASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK- 1059
               + I +DM  I+   L I+ D +  SI+++ ++++K   ++V+  +   I   V+ ++ 
Sbjct:  1118 CYLAIGVDMARIKLLGLHIDLDTIVFSILKS-RMRVKPTQVEVVASQS-RIVVRVEATRT 1175

Query:  1060 --IHFELYSLKNVLPMVIVKGI 1079
               I+ EL  L   L  V+V G+
Sbjct:  1176 STINAELARLALSLQNVVVAGL 1197

 Score = 790 (283.2 bits), Expect = 2.5e-74, Sum P(2) = 2.5e-74
 Identities = 202/438 (46%), Positives = 267/438 (60%)

Query:   831 ESCSEAFLNSLR--KFFEGQQD-KLDKK--IKFVED-IGWDDKS-QILEEVTHKTSGITE 883
             E  SEA    LR  +F E + D KLD +  I  V   IG   K  +   ++ H+   +T 
Sbjct:   941 EEMSEALETLLRTPEFAEARDDFKLDVRNHINTVSKRIGQLQKRYEKCIDLCHQIECLTT 1000

Query:   884 KQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVP 943
             +QL  F++    RY     E GTA+GAI AQSIGEPGTQMTLKTFHFAGVASMNITQGVP
Sbjct:  1001 EQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGVP 1060

Query:   944 RIKEIINGAKRISTPIITAELE-CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
             RI EIIN  K ISTPIITAELE C+  E  AR VK RIEKT L +++  +++V       
Sbjct:  1061 RIVEIINATKTISTPIITAELENCHSME-FARQVKARIEKTTLAELSSYVEVVCGPYSCY 1119

Query:  1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK--- 1059
             + I +DM  I+   L I+ D +  SI+++ ++++K   ++V+  +   I   V+ ++   
Sbjct:  1120 LAIGVDMARIKLLGLHIDLDTIVFSILKS-RMRVKPTQVEVVASQS-RIVVRVEATRTST 1177

Query:  1060 IHFELYSLKNVLPMVIVKGIKTXXXXXXXXXXXXXXXXXXXXXXXXYRLLVEGTGLQAVM 1119
             I+ EL  L   L  V+V G+                          Y+L +EG GL+ V+
Sbjct:  1178 INAELARLALSLQNVVVAGLPNINRAVIAVDDARQPPT--------YKLCIEGYGLRDVI 1229

Query:  1120 GAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTF 1179
                G+ G +T+SN+I E+ QTLGIEAAR  I+ EI E M+ HGMS+D RH+MLLA  MT 
Sbjct:  1230 ATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTA 1289

Query:  1180 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLG 1239
             RGEVLGITR G+ KM +SV  LASFEKTADHLF+A+  G+ D I GVSE II+G+P  +G
Sbjct:  1290 RGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIG 1349

Query:  1240 TGILKIRQRDA---VPPM 1254
             TGI K+ Q+     VPP+
Sbjct:  1350 TGIFKLLQQHEDKQVPPI 1367

 Score = 39 (18.8 bits), Expect = 2.5e-74, Sum P(2) = 2.5e-74
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query:   638 CMGSLPWRNSPLIMSQCGSKGSPINISQMVACV 670
             C+G   + +  L +   G   S INI QM+  V
Sbjct:    77 CIGHFGYLDLALPVFHIGHFRSTINILQMICKV 109


>ASPGD|ASPL0000047704 [details] [associations]
            symbol:AN10316 species:162425 "Emericella nidulans"
            [GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
            HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
            EnsemblFungi:CADANIAT00009238 Uniprot:C8VPJ2
        Length = 1445

 Score = 2024 (717.5 bits), Expect = 2.4e-209, P = 2.4e-209
 Identities = 466/1103 (42%), Positives = 663/1103 (60%)

Query:     1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKV- 58
             MR P+++ LR+  + K +  +C     K   C  CG +NG+VKK   + L I HD+ +  
Sbjct:   138 MRRPRLDNLRRMQIAKRVNDRCR----KTRTCENCGAVNGVVKKTGTSSLKITHDKFRAF 193

Query:    59 --TESLQE--------FASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCE 104
               + S ++        F  ++   + S   V      A   LN + VL LFKR++D+DCE
Sbjct:   194 NASTSAKKIPPPSKIVFDRSLEEARSSNPEVEKHHKKAQDDLNALRVLNLFKRISDSDCE 253

Query:   105 VLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
             +L L     RPE  +   I  PP+ IRPSV  D S S E+D+T +L  I+Q+N +L+  L
Sbjct:   254 LLGLDPKEARPEMFLWQFIPAPPVCIRPSVGQDAS-STEDDLTAKLGDIVQSNINLKNAL 312

Query:   162 VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
             ++       +  W+ +Q+++A YINSDV G+     + +P+ GFVQRLKGKQGRFRGNLS
Sbjct:   313 LKGAPVQTIMECWDYMQLQIAVYINSDVPGLN-KADLGKPIRGFVQRLKGKQGRFRGNLS 371

Query:   222 GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
             GKRV+++GRTVISPDPNL++ EVA+P  +A+ +TYPE V+ +N EKL+QC++NG  K+PG
Sbjct:   372 GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVNRYNKEKLQQCVRNGQKKWPG 431

Query:   282 ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
             A  I       + +  YG  +  +A +L+ G IV+RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct:   432 ANYIIKKGNPLKTMLKYGNLKF-IADQLQEGDIVERHIEDGDIVLFNRQPSLHKLSILSH 490

Query:   340 RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
              A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct:   491 FAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query:   400 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
              ++ + QDF+++++L++ KD F+DR +F+ +C YM     R DLP PA+ KP  LWTGKQ
Sbjct:   551 PIIGAIQDFISAAYLLSSKDNFFDRRSFTQICLYMLGPQTRFDLPPPAVFKPQMLWTGKQ 610

Query:   460 LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
             +F++L+RP+ +  V VNL    K +       +G++   ++   PND ++  RNSE++ G
Sbjct:   611 VFNILMRPNKDDPVLVNLDAACKQFKPP----KGNQPRDLD---PNDSWLVVRNSEVMCG 663

Query:   520 QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
              + K+T+G+G KD ++ ++LRD+G  A +  MNRL+KLSARW  N GFSIGI DV P   
Sbjct:   664 VMDKSTVGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFSNMGFSIGITDVYPSDR 723

Query:   580 LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
             L   K  L+   Y  C+  I +Y  G L+  PGCD  QT+E  ++ IL+++R+ AG  C+
Sbjct:   724 LVQSKNDLVEAAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQQAGDECI 783

Query:   640 GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
               L   NSPLIM+  GSKGS IN+SQMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P
Sbjct:   784 AQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQP 843

Query:   700 AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
              +KGFV NSF+SGL   EF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS  YD+
Sbjct:   844 PSKGFVRNSFFSGLLPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTGYDD 903

Query:   760 SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
             +VRN+   IVQF YGDD +DP +MEGK+ +P++FDR  +  + T     +R LSP ++ E
Sbjct:   904 TVRNSSQGIVQFQYGDDKLDPVDMEGKA-KPVHFDRTFIHAETTTYKNEERSLSPAEIME 962

Query:   820 IVEKQL----AAYGKESCSEAFLNSLRKF------FEGQQDKLDKKIKFVED-----IGW 864
             + E+ L    A   +     A L+ + +       FE  +D LD   ++V+      I  
Sbjct:   963 VCEEMLSKERAKLARYDLMGAELDYMDRSDHGVDQFESARDFLDSIQQYVQTKADKLISR 1022

Query:   865 DDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIG-AIGAQSIGEPGTQM 923
                S   +E T K    T K  E  ++T  +   +K  +A    G A+GA      G   
Sbjct:  1023 GGDSDPSDERTIKGLNHTGKLTERTLRTFIAECLMKYKKAQVEPGHAVGAVGAQSIGEPG 1082

Query:   924 TLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKT 983
             T  T      A      GV  +  I  G  RI   II A  E +    +  +V+ R    
Sbjct:  1083 TQMTLKTFHFA------GVAGMS-ITQGVPRIKE-IINASKEISTPVISCELVEKR--NI 1132

Query:   984 LLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLC--INADIVKESIVQTPKIKLKQQHI 1041
             +  ++AK  +I  T     I    +  T ++A+L   IN D +    +     K++Q   
Sbjct:  1133 VAARMAKG-RIEKTFLRDIIHYVRETWTGKEAYLTVKINWDTISALELDLTVGKIRQAIE 1191

Query:  1042 KVLDFRKLEIFPPVDKSKIHFEL 1064
                 F+  ++     +S IH  +
Sbjct:  1192 NHRRFKSEDLKLRSTRSHIHIHI 1214

 Score = 799 (286.3 bits), Expect = 2.7e-76, P = 2.7e-76
 Identities = 189/421 (44%), Positives = 254/421 (60%)

Query:   831 ESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFI 890
             ES  + FL+S++++    Q K DK I    D    D+  I + + H T  +TE+ L  FI
Sbjct:   999 ESARD-FLDSIQQYV---QTKADKLISRGGDSDPSDERTI-KGLNH-TGKLTERTLRTFI 1052

Query:   891 QTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN 950
               C  +Y+  +VE G A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN
Sbjct:  1053 AECLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN 1112

Query:   951 GAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDME 1010
              +K ISTP+I+ EL    N  AAR+ KGRIEKT L  +   ++   T + A + + ++ +
Sbjct:  1113 ASKEISTPVISCELVEKRNIVAARMAKGRIEKTFLRDIIHYVRETWTGKEAYLTVKINWD 1172

Query:  1011 TIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRK---LEI-FPPVDKSKIHFELYS 1066
             TI    L +    ++++I +  + + K + +K+   R    + I   P  K K+     +
Sbjct:  1173 TISALELDLTVGKIRQAI-ENHR-RFKSEDLKLRSTRSHIHIHIDLDPASKEKLSKTEIA 1230

Query:  1067 LKNVLPMVIVKGIKTXXXXXXXXXX--XXXXXXXXXXXXXXYRLLVEGTGLQAVMGAEGI 1124
               +  P + +K +K                             LLVEG GL+  M   GI
Sbjct:  1231 ATSSDPFLRLKALKRLLPDIQVLGHPQANRAIIRTDDKSDTNTLLVEGYGLRQCMNTVGI 1290

Query:  1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
             DG +T+SN++ E ++ LGIEAAR  II EI+E MK   M ID RHM LLAD+MT++GEVL
Sbjct:  1291 DGLRTRSNNVMETREVLGIEAARSTIIQEISEVMK--DMDIDPRHMQLLADVMTYKGEVL 1348

Query:  1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
             GITRFG+ KM  SVL LASFEKTADHLF+A   GR D IEGVSECIIMG  + LGTG ++
Sbjct:  1349 GITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTGAME 1408

Query:  1245 I 1245
             +
Sbjct:  1409 V 1409


>UNIPROTKB|J9NW09 [details] [associations]
            symbol:POLR2A "DNA-directed RNA polymerase" species:9615
            "Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
            GeneTree:ENSGT00700000104490 EMBL:AAEX03003616 EMBL:AAEX03003617
            Ensembl:ENSCAFT00000050029 Uniprot:J9NW09
        Length = 1789

 Score = 1287 (458.1 bits), Expect = 1.2e-180, Sum P(4) = 1.2e-180
 Identities = 300/779 (38%), Positives = 453/779 (58%)

Query:    85 ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
             +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct:   215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query:   142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
             D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct:   275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query:   201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
             PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct:   335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query:   261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
             +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct:   395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query:   320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
             GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct:   453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query:   380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
              E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct:   513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query:   440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
             +V  P PAILKP  LWTGKQ+FS++I  H N           +T+S      + ++    
Sbjct:   573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCI---------RTHST---HPDDEDSGPY 618

Query:   500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
             + + P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  +  
Sbjct:   619 KHISPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDVTRLFYSNIQTVIN 677

Query:   560 RWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    QT
Sbjct:   678 NWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNN-ELEPTPGNTLRQT 736

Query:   619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
              E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G+
Sbjct:   737 FENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGK 796

Query:   679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
             R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA+
Sbjct:   797 RIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAE 856

Query:   739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
             TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+      G+S E  N   L  
Sbjct:   857 TGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL-----AGESVEFQNLATLKP 911

Query:   799 KVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFL-NSLRKFFEGQQDKLDKKI 856
               KA        Y + + +   +++ L    K+  S A + N L + FE  ++  D+++
Sbjct:   912 SNKAFEKKFRFDYTNERALRRTLQEDLV---KDVLSNAHIQNELEREFERMRE--DREV 965

 Score = 252 (93.8 bits), Expect = 1.2e-180, Sum P(4) = 1.2e-180
 Identities = 59/155 (38%), Positives = 83/155 (53%)

Query:  1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
             L  +G  L  V+  + +D  +T SN I E+   LGIEA R  +  E+   +   G  ++ 
Sbjct:  1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query:  1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
             RH+ LL D MT RG ++ ITR G+ + D   LM  SFE+T D L  A+ +G  D ++GVS
Sbjct:  1396 RHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVS 1455

Query:  1228 ECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDP 1262
             E I++G   P GTG   +   DA     KYG   P
Sbjct:  1456 ENIMLGQLAPAGTGCFDLLL-DA--EKCKYGMEIP 1487

 Score = 224 (83.9 bits), Expect = 1.2e-180, Sum P(4) = 1.2e-180
 Identities = 54/150 (36%), Positives = 85/150 (56%)

Query:   895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
             S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct:  1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query:   955 ISTPIITAEL---ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
               TP +T  L      D E A  ++  R+E T L +V  +  I       S V+A D E 
Sbjct:  1134 PKTPSLTVFLLGQSARDAERAKDILC-RLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEW 1192

Query:  1012 IQDAHLCINADIVKESIVQTPKIKLKQQHI 1041
             +   +   + D+ + S     +++L ++H+
Sbjct:  1193 VNVYYEMPDFDVARIS-PWLLRVELDRKHM 1221

 Score = 45 (20.9 bits), Expect = 1.2e-180, Sum P(4) = 1.2e-180
 Identities = 18/70 (25%), Positives = 31/70 (44%)

Query:     4 PKMEALRKTDLMKSIVKK---CSTMASKAVKCP-RCGYINGMVKKAVAVLGIIHDRSKVT 59
             PK+  L   D  + ++++   C T A    +CP   G+I   + K V  +G +    KV 
Sbjct:    52 PKLGGLM--DPRQGVIERTGRCQTCAGNMTECPGHFGHIE--LAKPVFHVGFLVKTMKVL 107

Query:    60 ESLQEFASAI 69
               +  F S +
Sbjct:   108 RCVCFFCSKL 117


>UNIPROTKB|G3MZY8 [details] [associations]
            symbol:POLR2A "DNA-directed RNA polymerase" species:9913
            "Bos taurus" [GO:0031625 "ubiquitin protein ligase binding"
            evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=IEA] [GO:0004672 "protein kinase activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IEA]
            InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
            SMART:SM00663 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
            GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:DAAA02048777
            EMBL:DAAA02048778 EMBL:DAAA02048779 EMBL:DAAA02048780
            EMBL:DAAA02048781 Ensembl:ENSBTAT00000064788 Uniprot:G3MZY8
        Length = 1970

 Score = 1286 (457.8 bits), Expect = 3.7e-178, Sum P(4) = 3.7e-178
 Identities = 300/779 (38%), Positives = 453/779 (58%)

Query:    85 ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
             +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct:   215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query:   142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
             D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct:   275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query:   201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
             PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct:   335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query:   261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
             +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct:   395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query:   320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
             GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct:   453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query:   380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
              E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct:   513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query:   440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
             +V  P PAILKP  LWTGKQ+FS++I  H N           +T+S      + ++    
Sbjct:   573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCI---------RTHST---HPDDEDSGPY 618

Query:   500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
             + + P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  +  
Sbjct:   619 KHISPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVIN 677

Query:   560 RWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    QT
Sbjct:   678 NWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNN-ELEPTPGNTLRQT 736

Query:   619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
              E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G+
Sbjct:   737 FENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGK 796

Query:   679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
             R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA+
Sbjct:   797 RIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAE 856

Query:   739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
             TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+      G+S E  N   L  
Sbjct:   857 TGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL-----AGESVEFQNLATLKP 911

Query:   799 KVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFL-NSLRKFFEGQQDKLDKKI 856
               KA        Y + + +   +++ L    K+  S A + N L + FE  ++  D+++
Sbjct:   912 SNKAFEKKFRFDYTNERALRRTLQEDLV---KDVLSNAHIQNELEREFERMRE--DREV 965

 Score = 256 (95.2 bits), Expect = 3.7e-178, Sum P(4) = 3.7e-178
 Identities = 59/157 (37%), Positives = 85/157 (54%)

Query:  1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
             ++L  +G  L  V+  + +D  +T SN I E+   LGIEA R  +  E+   +   G  +
Sbjct:  1335 FQLETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYV 1394

Query:  1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
             + RH+ LL D MT RG ++ ITR G+ + D   LM  SFE+T D L  A+ +G  D ++G
Sbjct:  1395 NYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKG 1454

Query:  1226 VSECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDP 1262
             VSE I++G   P GTG   +   DA     KYG   P
Sbjct:  1455 VSENIMLGQLAPAGTGCFDLLL-DA--EKCKYGMEIP 1488

 Score = 224 (83.9 bits), Expect = 3.7e-178, Sum P(4) = 3.7e-178
 Identities = 54/150 (36%), Positives = 85/150 (56%)

Query:   895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
             S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct:  1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query:   955 ISTPIITAEL---ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
               TP +T  L      D E A  ++  R+E T L +V  +  I       S V+A D E 
Sbjct:  1134 PKTPSLTVFLLGQSARDAERAKDILC-RLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEW 1192

Query:  1012 IQDAHLCINADIVKESIVQTPKIKLKQQHI 1041
             +   +   + D+ + S     +++L ++H+
Sbjct:  1193 VNVYYEMPDFDVARIS-PWLLRVELDRKHM 1221

 Score = 45 (20.9 bits), Expect = 3.7e-178, Sum P(4) = 3.7e-178
 Identities = 18/70 (25%), Positives = 31/70 (44%)

Query:     4 PKMEALRKTDLMKSIVKK---CSTMASKAVKCP-RCGYINGMVKKAVAVLGIIHDRSKVT 59
             PK+  L   D  + ++++   C T A    +CP   G+I   + K V  +G +    KV 
Sbjct:    52 PKLGGLM--DPRQGVIERTGRCQTCAGNMTECPGHFGHIE--LAKPVFHVGFLVKTMKVL 107

Query:    60 ESLQEFASAI 69
               +  F S +
Sbjct:   108 RCVCFFCSKL 117


>UNIPROTKB|F1PGS0 [details] [associations]
            symbol:POLR2A "DNA-directed RNA polymerase" species:9615
            "Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
            GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:AAEX03003616
            EMBL:AAEX03003617 Ensembl:ENSCAFT00000026237 Uniprot:F1PGS0
        Length = 1969

 Score = 1287 (458.1 bits), Expect = 7.5e-178, Sum P(4) = 7.5e-178
 Identities = 300/779 (38%), Positives = 453/779 (58%)

Query:    85 ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
             +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct:   215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query:   142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
             D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct:   275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query:   201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
             PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct:   335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query:   261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
             +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct:   395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query:   320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
             GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct:   453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query:   380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
              E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct:   513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query:   440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
             +V  P PAILKP  LWTGKQ+FS++I  H N           +T+S      + ++    
Sbjct:   573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCI---------RTHST---HPDDEDSGPY 618

Query:   500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
             + + P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  +  
Sbjct:   619 KHISPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDVTRLFYSNIQTVIN 677

Query:   560 RWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    QT
Sbjct:   678 NWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNN-ELEPTPGNTLRQT 736

Query:   619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
              E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G+
Sbjct:   737 FENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGK 796

Query:   679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
             R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA+
Sbjct:   797 RIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAE 856

Query:   739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
             TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+      G+S E  N   L  
Sbjct:   857 TGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL-----AGESVEFQNLATLKP 911

Query:   799 KVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFL-NSLRKFFEGQQDKLDKKI 856
               KA        Y + + +   +++ L    K+  S A + N L + FE  ++  D+++
Sbjct:   912 SNKAFEKKFRFDYTNERALRRTLQEDLV---KDVLSNAHIQNELEREFERMRE--DREV 965

 Score = 252 (93.8 bits), Expect = 7.5e-178, Sum P(4) = 7.5e-178
 Identities = 59/155 (38%), Positives = 83/155 (53%)

Query:  1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
             L  +G  L  V+  + +D  +T SN I E+   LGIEA R  +  E+   +   G  ++ 
Sbjct:  1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query:  1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
             RH+ LL D MT RG ++ ITR G+ + D   LM  SFE+T D L  A+ +G  D ++GVS
Sbjct:  1396 RHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVS 1455

Query:  1228 ECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDP 1262
             E I++G   P GTG   +   DA     KYG   P
Sbjct:  1456 ENIMLGQLAPAGTGCFDLLL-DA--EKCKYGMEIP 1487

 Score = 224 (83.9 bits), Expect = 7.5e-178, Sum P(4) = 7.5e-178
 Identities = 54/150 (36%), Positives = 85/150 (56%)

Query:   895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
             S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct:  1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query:   955 ISTPIITAEL---ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
               TP +T  L      D E A  ++  R+E T L +V  +  I       S V+A D E 
Sbjct:  1134 PKTPSLTVFLLGQSARDAERAKDILC-RLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEW 1192

Query:  1012 IQDAHLCINADIVKESIVQTPKIKLKQQHI 1041
             +   +   + D+ + S     +++L ++H+
Sbjct:  1193 VNVYYEMPDFDVARIS-PWLLRVELDRKHM 1221

 Score = 45 (20.9 bits), Expect = 7.5e-178, Sum P(4) = 7.5e-178
 Identities = 18/70 (25%), Positives = 31/70 (44%)

Query:     4 PKMEALRKTDLMKSIVKK---CSTMASKAVKCP-RCGYINGMVKKAVAVLGIIHDRSKVT 59
             PK+  L   D  + ++++   C T A    +CP   G+I   + K V  +G +    KV 
Sbjct:    52 PKLGGLM--DPRQGVIERTGRCQTCAGNMTECPGHFGHIE--LAKPVFHVGFLVKTMKVL 107

Query:    60 ESLQEFASAI 69
               +  F S +
Sbjct:   108 RCVCFFCSKL 117


>RGD|1587326 [details] [associations]
            symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide A"
            species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0004672 "protein kinase activity" evidence=IEA;ISO] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=IEA;ISO] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IEA;ISO] [GO:0006468 "protein
            phosphorylation" evidence=ISO] [GO:0008150 "biological_process"
            evidence=ND] [GO:0031625 "ubiquitin protein ligase binding"
            evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
            SMART:SM00663 RGD:1587326 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
            GeneTree:ENSGT00700000104490 KO:K03006 CTD:5430 OrthoDB:EOG4JWVCM
            IPI:IPI00952328 RefSeq:XP_001079162.1 RefSeq:XP_343923.3
            UniGene:Rn.163136 Ensembl:ENSRNOT00000068013 GeneID:363633
            KEGG:rno:363633 UCSC:RGD:1587326 NextBio:683839 ArrayExpress:D4A5A6
            Uniprot:D4A5A6
        Length = 1970

 Score = 1287 (458.1 bits), Expect = 7.6e-178, Sum P(4) = 7.6e-178
 Identities = 300/779 (38%), Positives = 453/779 (58%)

Query:    85 ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
             +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct:   215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query:   142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
             D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct:   275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query:   201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
             PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct:   335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query:   261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
             +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct:   395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query:   320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
             GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct:   453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query:   380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
              E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct:   513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query:   440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
             +V  P PAILKP  LWTGKQ+FS++I  H N           +T+S      + ++    
Sbjct:   573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCI---------RTHST---HPDDEDSGPY 618

Query:   500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
             + + P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  +  
Sbjct:   619 KHISPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDVTRLFYSNIQTVIN 677

Query:   560 RWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    QT
Sbjct:   678 NWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNN-ELEPTPGNTLRQT 736

Query:   619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
              E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G+
Sbjct:   737 FENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGK 796

Query:   679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
             R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA+
Sbjct:   797 RIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAE 856

Query:   739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
             TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+      G+S E  N   L  
Sbjct:   857 TGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL-----AGESVEFQNLATLKP 911

Query:   799 KVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFL-NSLRKFFEGQQDKLDKKI 856
               KA        Y + + +   +++ L    K+  S A + N L + FE  ++  D+++
Sbjct:   912 SNKAFEKKFRFDYTNERALRRTLQEDLV---KDVLSNAHIQNELEREFERMRE--DREV 965

 Score = 252 (93.8 bits), Expect = 7.6e-178, Sum P(4) = 7.6e-178
 Identities = 59/155 (38%), Positives = 83/155 (53%)

Query:  1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
             L  +G  L  V+  + +D  +T SN I E+   LGIEA R  +  E+   +   G  ++ 
Sbjct:  1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query:  1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
             RH+ LL D MT RG ++ ITR G+ + D   LM  SFE+T D L  A+ +G  D ++GVS
Sbjct:  1396 RHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVS 1455

Query:  1228 ECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDP 1262
             E I++G   P GTG   +   DA     KYG   P
Sbjct:  1456 ENIMLGQLAPAGTGCFDLLL-DA--EKCKYGMEIP 1487

 Score = 224 (83.9 bits), Expect = 7.6e-178, Sum P(4) = 7.6e-178
 Identities = 54/150 (36%), Positives = 85/150 (56%)

Query:   895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
             S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct:  1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query:   955 ISTPIITAEL---ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
               TP +T  L      D E A  ++  R+E T L +V  +  I       S V+A D E 
Sbjct:  1134 PKTPSLTVFLLGQSARDAERAKDILC-RLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEW 1192

Query:  1012 IQDAHLCINADIVKESIVQTPKIKLKQQHI 1041
             +   +   + D+ + S     +++L ++H+
Sbjct:  1193 VNVYYEMPDFDVARIS-PWLLRVELDRKHM 1221

 Score = 45 (20.9 bits), Expect = 7.6e-178, Sum P(4) = 7.6e-178
 Identities = 18/70 (25%), Positives = 31/70 (44%)

Query:     4 PKMEALRKTDLMKSIVKK---CSTMASKAVKCP-RCGYINGMVKKAVAVLGIIHDRSKVT 59
             PK+  L   D  + ++++   C T A    +CP   G+I   + K V  +G +    KV 
Sbjct:    52 PKLGGLM--DPRQGVIERTGRCQTCAGNMTECPGHFGHIE--LAKPVFHVGFLVKTMKVL 107

Query:    60 ESLQEFASAI 69
               +  F S +
Sbjct:   108 RCVCFFCSKL 117


>UNIPROTKB|P24928 [details] [associations]
            symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
            species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0003677 "DNA binding" evidence=NAS] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=NAS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=NAS] [GO:0006366
            "transcription from RNA polymerase II promoter"
            evidence=IDA;NAS;TAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
            "transcription-coupled nucleotide-excision repair" evidence=TAS]
            [GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
            "transcription initiation from RNA polymerase II promoter"
            evidence=TAS] [GO:0006368 "transcription elongation from RNA
            polymerase II promoter" evidence=TAS] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
            splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
            "positive regulation of viral transcription" evidence=TAS]
            [GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
            [GO:0006468 "protein phosphorylation" evidence=IDA]
            Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 Reactome:REACT_116125
            EMBL:CH471108 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
            GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006367 GO:GO:0000398
            Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
            Reactome:REACT_1892 EMBL:AC113189 GO:GO:0003899 PDB:2GHQ PDB:2GHT
            PDBsum:2GHQ PDBsum:2GHT eggNOG:COG0086 GO:GO:0003968 GO:GO:0005665
            HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X63564 EMBL:X74874
            EMBL:X74873 EMBL:X74872 EMBL:X74871 EMBL:X74870 EMBL:BC137231
            IPI:IPI00031627 PIR:I38186 PIR:S21054 RefSeq:NP_000928.1
            UniGene:Hs.270017 PDB:2LTO PDBsum:2LTO ProteinModelPortal:P24928
            SMR:P24928 DIP:DIP-29011N IntAct:P24928 MINT:MINT-156582
            STRING:P24928 PhosphoSite:P24928 DMDM:281185484 PaxDb:P24928
            PRIDE:P24928 Ensembl:ENST00000322644 GeneID:5430 KEGG:hsa:5430
            UCSC:uc002ghf.4 CTD:5430 GeneCards:GC17P007387 H-InvDB:HIX0173727
            HGNC:HGNC:9187 HPA:CAB012226 HPA:CAB016388 HPA:CAB022311
            HPA:HPA021563 MIM:180660 neXtProt:NX_P24928 PharmGKB:PA33507
            HOVERGEN:HBG004339 InParanoid:P24928 OrthoDB:EOG4JWVCM
            BindingDB:P24928 ChEMBL:CHEMBL1641353 ChiTaRS:POLR2A
            EvolutionaryTrace:P24928 GenomeRNAi:5430 NextBio:21009
            ArrayExpress:P24928 Bgee:P24928 CleanEx:HS_POLR2A
            Genevestigator:P24928 GermOnline:ENSG00000181222 Uniprot:P24928
        Length = 1970

 Score = 1286 (457.8 bits), Expect = 9.8e-178, Sum P(4) = 9.8e-178
 Identities = 300/779 (38%), Positives = 453/779 (58%)

Query:    85 ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
             +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct:   215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query:   142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
             D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct:   275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query:   201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
             PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct:   335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query:   261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
             +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct:   395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query:   320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
             GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct:   453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query:   380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
              E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct:   513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query:   440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
             +V  P PAILKP  LWTGKQ+FS++I  H N           +T+S      + ++    
Sbjct:   573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCI---------RTHST---HPDDEDSGPY 618

Query:   500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
             + + P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  +  
Sbjct:   619 KHISPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVIN 677

Query:   560 RWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    QT
Sbjct:   678 NWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNN-ELEPTPGNTLRQT 736

Query:   619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
              E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G+
Sbjct:   737 FENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGK 796

Query:   679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
             R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA+
Sbjct:   797 RIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAE 856

Query:   739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
             TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+      G+S E  N   L  
Sbjct:   857 TGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL-----AGESVEFQNLATLKP 911

Query:   799 KVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFL-NSLRKFFEGQQDKLDKKI 856
               KA        Y + + +   +++ L    K+  S A + N L + FE  ++  D+++
Sbjct:   912 SNKAFEKKFRFDYTNERALRRTLQEDLV---KDVLSNAHIQNELEREFERMRE--DREV 965

 Score = 252 (93.8 bits), Expect = 9.8e-178, Sum P(4) = 9.8e-178
 Identities = 59/155 (38%), Positives = 83/155 (53%)

Query:  1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
             L  +G  L  V+  + +D  +T SN I E+   LGIEA R  +  E+   +   G  ++ 
Sbjct:  1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query:  1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
             RH+ LL D MT RG ++ ITR G+ + D   LM  SFE+T D L  A+ +G  D ++GVS
Sbjct:  1396 RHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVS 1455

Query:  1228 ECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDP 1262
             E I++G   P GTG   +   DA     KYG   P
Sbjct:  1456 ENIMLGQLAPAGTGCFDLLL-DA--EKCKYGMEIP 1487

 Score = 224 (83.9 bits), Expect = 9.8e-178, Sum P(4) = 9.8e-178
 Identities = 54/150 (36%), Positives = 85/150 (56%)

Query:   895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
             S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct:  1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query:   955 ISTPIITAEL---ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
               TP +T  L      D E A  ++  R+E T L +V  +  I       S V+A D E 
Sbjct:  1134 PKTPSLTVFLLGQSARDAERAKDILC-RLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEW 1192

Query:  1012 IQDAHLCINADIVKESIVQTPKIKLKQQHI 1041
             +   +   + D+ + S     +++L ++H+
Sbjct:  1193 VNVYYEMPDFDVARIS-PWLLRVELDRKHM 1221

 Score = 45 (20.9 bits), Expect = 9.8e-178, Sum P(4) = 9.8e-178
 Identities = 18/70 (25%), Positives = 31/70 (44%)

Query:     4 PKMEALRKTDLMKSIVKK---CSTMASKAVKCP-RCGYINGMVKKAVAVLGIIHDRSKVT 59
             PK+  L   D  + ++++   C T A    +CP   G+I   + K V  +G +    KV 
Sbjct:    52 PKLGGLM--DPRQGVIERTGRCQTCAGNMTECPGHFGHIE--LAKPVFHVGFLVKTMKVL 107

Query:    60 ESLQEFASAI 69
               +  F S +
Sbjct:   108 RCVCFFCSKL 117


>MGI|MGI:98086 [details] [associations]
            symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide
            A" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=ISO] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
            evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
            [GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
            [GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
            [GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 MGI:MGI:98086
            GO:GO:0046872 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
            EMBL:AL603707 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            eggNOG:COG0086 GO:GO:0005665 GeneTree:ENSGT00700000104490
            HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 CTD:5430
            HOVERGEN:HBG004339 OrthoDB:EOG4JWVCM ChiTaRS:POLR2A EMBL:M12130
            EMBL:M14101 IPI:IPI00136207 PIR:A28490 RefSeq:NP_033115.1
            UniGene:Mm.16533 DisProt:DP00181 ProteinModelPortal:P08775
            SMR:P08775 DIP:DIP-46369N IntAct:P08775 STRING:P08775
            PhosphoSite:P08775 PaxDb:P08775 PRIDE:P08775
            Ensembl:ENSMUST00000058470 Ensembl:ENSMUST00000071213 GeneID:20020
            KEGG:mmu:20020 UCSC:uc007jrj.1 InParanoid:Q5F298 NextBio:297535
            Bgee:P08775 CleanEx:MM_POLR2A Genevestigator:P08775
            GermOnline:ENSMUSG00000005198 Uniprot:P08775
        Length = 1970

 Score = 1286 (457.8 bits), Expect = 9.8e-178, Sum P(4) = 9.8e-178
 Identities = 300/779 (38%), Positives = 453/779 (58%)

Query:    85 ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
             +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct:   215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query:   142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
             D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct:   275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query:   201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
             PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct:   335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query:   261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
             +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct:   395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query:   320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
             GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct:   453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query:   380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
              E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct:   513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query:   440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
             +V  P PAILKP  LWTGKQ+FS++I  H N           +T+S      + ++    
Sbjct:   573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCI---------RTHST---HPDDEDSGPY 618

Query:   500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
             + + P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  +  
Sbjct:   619 KHISPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVIN 677

Query:   560 RWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    QT
Sbjct:   678 NWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNN-ELEPTPGNTLRQT 736

Query:   619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
              E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G+
Sbjct:   737 FENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGK 796

Query:   679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
             R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA+
Sbjct:   797 RIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAE 856

Query:   739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
             TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+      G+S E  N   L  
Sbjct:   857 TGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL-----AGESVEFQNLATLKP 911

Query:   799 KVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFL-NSLRKFFEGQQDKLDKKI 856
               KA        Y + + +   +++ L    K+  S A + N L + FE  ++  D+++
Sbjct:   912 SNKAFEKKFRFDYTNERALRRTLQEDLV---KDVLSNAHIQNELEREFERMRE--DREV 965

 Score = 252 (93.8 bits), Expect = 9.8e-178, Sum P(4) = 9.8e-178
 Identities = 59/155 (38%), Positives = 83/155 (53%)

Query:  1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
             L  +G  L  V+  + +D  +T SN I E+   LGIEA R  +  E+   +   G  ++ 
Sbjct:  1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query:  1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
             RH+ LL D MT RG ++ ITR G+ + D   LM  SFE+T D L  A+ +G  D ++GVS
Sbjct:  1396 RHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVS 1455

Query:  1228 ECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDP 1262
             E I++G   P GTG   +   DA     KYG   P
Sbjct:  1456 ENIMLGQLAPAGTGCFDLLL-DA--EKCKYGMEIP 1487

 Score = 224 (83.9 bits), Expect = 9.8e-178, Sum P(4) = 9.8e-178
 Identities = 54/150 (36%), Positives = 85/150 (56%)

Query:   895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
             S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct:  1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query:   955 ISTPIITAEL---ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
               TP +T  L      D E A  ++  R+E T L +V  +  I       S V+A D E 
Sbjct:  1134 PKTPSLTVFLLGQSARDAERAKDILC-RLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEW 1192

Query:  1012 IQDAHLCINADIVKESIVQTPKIKLKQQHI 1041
             +   +   + D+ + S     +++L ++H+
Sbjct:  1193 VNVYYEMPDFDVARIS-PWLLRVELDRKHM 1221

 Score = 45 (20.9 bits), Expect = 9.8e-178, Sum P(4) = 9.8e-178
 Identities = 18/70 (25%), Positives = 31/70 (44%)

Query:     4 PKMEALRKTDLMKSIVKK---CSTMASKAVKCP-RCGYINGMVKKAVAVLGIIHDRSKVT 59
             PK+  L   D  + ++++   C T A    +CP   G+I   + K V  +G +    KV 
Sbjct:    52 PKLGGLM--DPRQGVIERTGRCQTCAGNMTECPGHFGHIE--LAKPVFHVGFLVKTMKVL 107

Query:    60 ESLQEFASAI 69
               +  F S +
Sbjct:   108 RCVCFFCSKL 117


>ZFIN|ZDB-GENE-041008-78 [details] [associations]
            symbol:polr2a "polymerase (RNA) II (DNA directed)
            polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=IEA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0016740 "transferase
            activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
            activity" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 ZFIN:ZDB-GENE-041008-78 GO:GO:0003677
            GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            GO:GO:0005665 GeneTree:ENSGT00700000104490 EMBL:AL929346
            IPI:IPI00608319 Ensembl:ENSDART00000077495 Bgee:F1Q9K4
            Uniprot:F1Q9K4
        Length = 1965

 Score = 1285 (457.4 bits), Expect = 2.5e-177, Sum P(4) = 2.5e-177
 Identities = 298/767 (38%), Positives = 443/767 (57%)

Query:    85 ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
             +L+P  V  +FKR+ D +  +L +     RPE +I+T + VPP+A+RP+V+M GS  N++
Sbjct:   212 LLSPERVHEIFKRIADEEDIILGMDPKYARPEWMIVTVLPVPPLAVRPAVVMQGSARNQD 271

Query:   142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
             D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct:   272 DLTHKLADIVKINNQLKRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 331

Query:   201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
             PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A  +T+PE V
Sbjct:   332 PLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIV 391

Query:   261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
             +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ D
Sbjct:   392 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQIGYKVERHMCD 449

Query:   320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
             GD+++FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct:   450 GDIIVFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 509

Query:   380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
              E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct:   510 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 569

Query:   440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR- 498
             +V  P PAILKP  LWTGKQ+FS++I  H N           +T+S     T  DEE   
Sbjct:   570 KV--PQPAILKPRPLWTGKQIFSLIIPGHINAI---------RTHS-----THPDEEDSG 613

Query:   499 -IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
               + + P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  +
Sbjct:   614 PYKNISPGDTKVIVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTV 672

Query:   558 SARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
                W+   G SIGI D +  K    D +  +     +V  V  K +N  +L+  PG    
Sbjct:   673 VNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHNN-ELEPTPGNTLR 731

Query:   617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
             QT E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++A VGQQ+V 
Sbjct:   732 QTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVE 791

Query:   677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
             G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKT
Sbjct:   792 GKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKT 851

Query:   737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
             A+TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+    +E ++   L     
Sbjct:   852 AETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNMATLKPSHK 911

Query:   797 LMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRK 843
               + K     A +R L      ++V+  +     +S  E     +R+
Sbjct:   912 AFEKKFKFDYANERALRRTLQEDVVKDVMTNAHVQSSLEREFEKMRE 958

 Score = 254 (94.5 bits), Expect = 2.5e-177, Sum P(4) = 2.5e-177
 Identities = 61/155 (39%), Positives = 83/155 (53%)

Query:  1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
             L  +G  L  V+  + +D  +T SN I E+   LGIEA R  +  E+   +   G  ++ 
Sbjct:  1333 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1392

Query:  1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
             RH+ LL D MT RG ++ ITR GI + D   LM  SFE+T D L  AS +G  D ++GVS
Sbjct:  1393 RHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSHGESDPMKGVS 1452

Query:  1228 ECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDP 1262
             E I++G   P GTG   +   DA     KYG   P
Sbjct:  1453 ENIMLGQLAPAGTGCFDLLL-DA--EKCKYGMEIP 1484

 Score = 218 (81.8 bits), Expect = 2.5e-177, Sum P(4) = 2.5e-177
 Identities = 53/140 (37%), Positives = 81/140 (57%)

Query:   905 GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL 964
             G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +KR  TP +T  L
Sbjct:  1081 GEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFL 1140

Query:   965 ---ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINA 1021
                   D E A  ++  R+E T L +V  +  I       + V+  D E +   +   + 
Sbjct:  1141 LGQAARDAERAKDILC-RLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDF 1199

Query:  1022 DIVKESIVQTPKIKLKQQHI 1041
             D+ + S     +I+L ++H+
Sbjct:  1200 DVTRIS-PWLLRIELDRKHM 1218

 Score = 46 (21.3 bits), Expect = 2.5e-177, Sum P(4) = 2.5e-177
 Identities = 19/70 (27%), Positives = 31/70 (44%)

Query:     4 PKMEALRKTDLMKSIVKK---CSTMASKAVKCP-RCGYINGMVKKAVAVLGIIHDRSKVT 59
             PK+  L   D  + ++++   C T A    +CP   G+I   + K V  +G I    KV 
Sbjct:    50 PKLGGLM--DPRQGVIERSGRCQTCAGNMTECPGHFGHIE--LAKPVFHVGFITKIMKVL 105

Query:    60 ESLQEFASAI 69
               +  F S +
Sbjct:   106 RCVCFFCSKL 115

 Score = 41 (19.5 bits), Expect = 3.2e-32, Sum P(4) = 3.2e-32
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query:   815 QQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKL 852
             Q V E++EK   A+  E       N+LR+ FE Q +++
Sbjct:   708 QDVIEVIEK---AHNNE-LEPTPGNTLRQTFENQVNRI 741

 Score = 41 (19.5 bits), Expect = 3.2e-32, Sum P(4) = 3.2e-32
 Identities = 9/44 (20%), Positives = 21/44 (47%)

Query:   454 LWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
             +W  +++F +  R   ++     +    K  S KL+   GD+++
Sbjct:   984 IWNAQKIFRINPRAPTDLNP-ARVVDGVKELSKKLVIVNGDDQL 1026

 Score = 39 (18.8 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query:    51 IIHDRSKVTESLQEFASAITHTKESKAAVNVATYI-LNPVNVL 92
             ++   ++  E  ++    + HT   K   N A Y   NP N +
Sbjct:  1140 LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTV 1182


>POMBASE|SPBC28F2.12 [details] [associations]
            symbol:rpb1 "RNA polymerase II large subunit Rpb1"
            species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IC] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IC] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 PomBase:SPBC28F2.12 GO:GO:0005829
            GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
            GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            eggNOG:COG0086 GO:GO:0005665 PDB:3H0G PDBsum:3H0G
            HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X56564 PIR:S26849
            RefSeq:NP_595673.1 ProteinModelPortal:P36594 IntAct:P36594
            MINT:MINT-1214221 STRING:P36594 EnsemblFungi:SPBC28F2.12.1
            GeneID:2540292 KEGG:spo:SPBC28F2.12 OrthoDB:EOG4J14H5
            EvolutionaryTrace:P36594 NextBio:20801422 Uniprot:P36594
        Length = 1752

 Score = 787 (282.1 bits), Expect = 1.9e-175, Sum P(4) = 1.9e-175
 Identities = 166/391 (42%), Positives = 249/391 (63%)

Query:    85 ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
             +L+P+ V  +F  ++  D   L L+E   RP+ +IIT + VPP ++RPS+ +DG+   E+
Sbjct:   207 LLSPLEVHTIFTHISSEDLAHLGLNEQYARPDWMIITVLPVPPPSVRPSISVDGTSRGED 266

Query:   142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
             D+T +L  II+ NA++++   E   A       + LQ  VA Y+++++ G P ++Q + R
Sbjct:   267 DLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQLLQFHVATYMDNEIAGQPQALQKSGR 326

Query:   201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
             PL     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + E+ +P  +A+ LTYPE V
Sbjct:   327 PLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETV 386

Query:   261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
             + +NI +L++ ++NGPD++PGA+ I    G  R+     +    + L+ G  V+RH+ DG
Sbjct:   387 TPYNIYQLQELVRNGPDEHPGAKYIIRDTGE-RIDLRYHKRAGDIPLRYGWRVERHIRDG 445

Query:   321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
             DVV+FNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMNMHVPQ+EE R 
Sbjct:   446 DVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRA 505

Query:   381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
             E   +  V   + +P++ + ++   QD L      + +D F  R A   +  ++ D  D 
Sbjct:   506 EIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLWVPD-WDG 564

Query:   441 VDLPTPAILKPVELWTGKQLFSVLIRPHANM 471
             + LP P ILKP  LWTGKQ+ S++I    N+
Sbjct:   565 I-LPPPVILKPKVLWTGKQILSLIIPKGINL 594

 Score = 583 (210.3 bits), Expect = 1.9e-175, Sum P(4) = 1.9e-175
 Identities = 119/281 (42%), Positives = 174/281 (61%)

Query:   504 PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIG 563
             P D  +   N E+I G + K T+G  ++ GL   + ++ G     G  N + ++   W+ 
Sbjct:   606 PTDSGMLIENGEIIYGVVDKKTVG-ASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYWLL 664

Query:   564 NHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
             ++GFSIGI D     +   +  + + E        I++    +L+ +PG    ++ EA +
Sbjct:   665 HNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKV 724

Query:   624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
             + ILN+ R++AG++   SL   N+   M   GSKGS INISQM ACVGQQ V G+R P G
Sbjct:   725 SRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFG 784

Query:   684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
             F  R+LPHFP+    P ++GF+ NS+  GL+  EFFFH M GREGL+DTAVKTA+TGY+ 
Sbjct:   785 FKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQ 844

Query:   744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
             RRL+KA+ED+ ++YD +VRNA G I+QF YG+DG+D   +E
Sbjct:   845 RRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVE 885

 Score = 267 (99.0 bits), Expect = 1.9e-175, Sum P(4) = 1.9e-175
 Identities = 54/138 (39%), Positives = 81/138 (58%)

Query:  1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
             L  +G  L   M  EG+D  +T SN   E+ Q LGIEA R  ++ E+   ++  G  ++ 
Sbjct:  1312 LETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNY 1371

Query:  1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
             RH+ LL D+MT RG ++ ITR GI + +   LM  SFE+T + L +A+ +G  D  +G+S
Sbjct:  1372 RHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGIS 1431

Query:  1228 ECIIMGIPMPLGTGILKI 1245
             E I++G   P+GTG   I
Sbjct:  1432 ENIMLGQLAPMGTGAFDI 1449

 Score = 251 (93.4 bits), Expect = 1.9e-175, Sum P(4) = 1.9e-175
 Identities = 67/173 (38%), Positives = 98/173 (56%)

Query:   895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
             +R++   V  G  +G + AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEI+N AK 
Sbjct:  1054 ARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKN 1113

Query:   955 ISTPIITAELE--CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
             I TP +T  L      N + A+ V+ +IE T L  V  + +I         VI  D + +
Sbjct:  1114 IKTPSLTIYLMPWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFV 1173

Query:  1013 QDAHLCINADIVKESIV-QTP-KIKLKQQHIKVLDFRKLEIFPPVDKSKIHFE 1063
             + A   I  + V+E++  Q+P  ++L+    K+LD +KL +     K    FE
Sbjct:  1174 E-AFFAIPDEEVEENLYKQSPWLLRLELDRAKMLD-KKLSMSDVAGKIAESFE 1224

 Score = 46 (21.3 bits), Expect = 2.0e-95, Sum P(4) = 2.0e-95
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query:   437 GMDRVDLPTPAILKPVELWT 456
             G D  DLP   +L P+E+ T
Sbjct:   196 GKDESDLPEKRLLSPLEVHT 215

 Score = 46 (21.3 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
 Identities = 37/147 (25%), Positives = 57/147 (38%)

Query:   121 AVPPIAIRPSVIMDGSQSNENDIT-----ERLKRIIQTNASLQ-QELVEANSAFKSLAGW 174
             A  P  + PS I++G       +T     +R+ R +Q NA+L  Q L+ +  A K +   
Sbjct:   978 AKKPTDLLPSDIINGLNELIAKLTIFRGSDRITRDVQNNATLLFQILLRSKFAVKRVIME 1037

Query:   175 ETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQ-GRFRGNLSGKRVEYTG---R 230
               L     ++I  +V    F   V  P    V  L  +  G     ++     Y G   +
Sbjct:  1038 YRLNKVAFEWIMGEVEA-RFQQAVVSP-GEMVGTLAAQSIGEPATQMTLNTFHYAGVSSK 1095

Query:   231 TVISPDPNLK-ITEVAIPIRMARILTY 256
              V    P LK I  VA  I+   +  Y
Sbjct:  1096 NVTLGVPRLKEILNVAKNIKTPSLTIY 1122

 Score = 41 (19.5 bits), Expect = 1.0e-96, Sum P(3) = 1.0e-96
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query:  1053 PPVD-KSKIHFELYSLKNVLPMVIVKGI 1079
             PPV  K K+   L++ K +L ++I KGI
Sbjct:   568 PPVILKPKV---LWTGKQILSLIIPKGI 592


>FB|FBgn0003277 [details] [associations]
            symbol:RpII215 "RNA polymerase II 215kD subunit" species:7227
            "Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
            II, core complex" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
            chromosome puff" evidence=IDA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=ISS;NAS] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007095
            "mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0005700
            "polytene chromosome" evidence=IDA] InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            PROSITE:PS00115 SMART:SM00663 GO:GO:0007095 GO:GO:0046872
            GO:GO:0003677 EMBL:AE014298 GO:GO:0006366 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0005703 GO:GO:0003899 eggNOG:COG0086
            GO:GO:0005665 GeneTree:ENSGT00700000104490 OMA:KVLPWST KO:K03006
            EMBL:M27431 EMBL:M14203 EMBL:M11798 EMBL:M19537 PIR:S04457
            RefSeq:NP_511124.1 UniGene:Dm.2925 ProteinModelPortal:P04052
            SMR:P04052 DIP:DIP-22282N IntAct:P04052 MINT:MINT-970158
            STRING:P04052 PaxDb:P04052 EnsemblMetazoa:FBtr0073542 GeneID:32100
            KEGG:dme:Dmel_CG1554 CTD:32100 FlyBase:FBgn0003277
            InParanoid:P04052 OrthoDB:EOG4QRFJV PhylomeDB:P04052
            GenomeRNAi:32100 NextBio:776837 Bgee:P04052 GermOnline:CG1554
            Uniprot:P04052
        Length = 1887

 Score = 1251 (445.4 bits), Expect = 2.2e-175, Sum P(4) = 2.2e-175
 Identities = 275/700 (39%), Positives = 419/700 (59%)

Query:    85 ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
             +++   V  + K +TD +C +L +     RP+ +I+T + VPP+A+RP+V+M G+  N++
Sbjct:   207 VVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQD 266

Query:   142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
             D+T +L  II+ N  L++      +A       + LQ  VA  +++D+ G+P +MQ + +
Sbjct:   267 DLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGK 326

Query:   201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
             PL     RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ LT+PE V
Sbjct:   327 PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELV 386

Query:   261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
             +  NI+++++ ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RHL D
Sbjct:   387 TPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL--RFHPKSSDLHLQCGYKVERHLRD 444

Query:   320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
              D+V+FNRQP+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R
Sbjct:   445 DDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETR 504

Query:   380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
              E   +      + TP+  + ++   QD LT+   +T++D F  R     +  ++    D
Sbjct:   505 AEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPT-WD 563

Query:   440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
                +P P ILKP  LWTGKQ+FS++I  + NM          +T+S      + ++E   
Sbjct:   564 -AKMPQPCILKPRPLWTGKQIFSLIIPGNVNMI---------RTHST---HPDEEDEGPY 610

Query:   500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
             + + P D  V   + ELI G L K +LG  +   L  +   + G          +  +  
Sbjct:   611 KWISPGDTKVMVEHGELIMGILCKKSLGT-SAGSLLHICFLELGHDIAGRFYGNIQTVIN 669

Query:   560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISE-NYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+   G SIGI D     +  ++  + I +   +V NV  K +N  +L+  PG    QT
Sbjct:   670 NWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNM-ELEPTPGNTLRQT 728

Query:   619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
              E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+
Sbjct:   729 FENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGK 788

Query:   679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
             R P GF  R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKTA+
Sbjct:   789 RIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAE 848

Query:   739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
             TGY+ RRLIKA+E + + YD +VRN+ G ++Q  YG+DG+
Sbjct:   849 TGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGL 888

 Score = 267 (99.0 bits), Expect = 2.2e-175, Sum P(4) = 2.2e-175
 Identities = 55/134 (41%), Positives = 81/134 (60%)

Query:  1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
             L  +GT +  V+    +D  +T SN I E+ Q LGIEA R  +  E+N  ++ +G+ ++ 
Sbjct:  1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387

Query:  1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
             RH+ LL D+MT +G ++ ITR GI + D   LM  SFE+T D L +A+ +   D + GVS
Sbjct:  1388 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVS 1447

Query:  1228 ECIIMGIPMPLGTG 1241
             E IIMG    +GTG
Sbjct:  1448 ENIIMGQLPKMGTG 1461

 Score = 221 (82.9 bits), Expect = 2.2e-175, Sum P(4) = 2.2e-175
 Identities = 52/121 (42%), Positives = 71/121 (58%)

Query:   895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
             +R++  +   G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T GVPR+KEIIN +K+
Sbjct:  1066 TRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKK 1125

Query:   955 ISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
                P +T  L      D E A  V+  R+E T L +V  +  I         VI+ D E 
Sbjct:  1126 PKAPSLTVFLTGGAARDAEKAKNVLC-RLEHTTLRKVTANTAIYYDPDPQRTVISEDQEF 1184

Query:  1012 I 1012
             +
Sbjct:  1185 V 1185

 Score = 43 (20.2 bits), Expect = 2.2e-175, Sum P(4) = 2.2e-175
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query:    21 KCSTMASKAVKCP-RCGYINGMVKKAVAVLGIIHDRSKV 58
             +C T A    +CP   G+I+  + K V  +G I    K+
Sbjct:    66 RCQTCAGNMTECPGHFGHID--LAKPVFHIGFITKTIKI 102

 Score = 37 (18.1 bits), Expect = 6.0e-34, Sum P(3) = 6.0e-34
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query:    29 AVKCPRCGYINGMVKKAVAVLGIIHD---RSKVTESLQ 63
             AVK    GYI   + KA+  + + +D   R+ V + +Q
Sbjct:   843 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQ 880


>CGD|CAL0000919 [details] [associations]
            symbol:RPO21 species:5476 "Candida albicans" [GO:0005665
            "DNA-directed RNA polymerase II, core complex" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0009267 "cellular response to starvation"
            evidence=IMP] [GO:0036170 "filamentous growth of a population of
            unicellular organisms in response to starvation" evidence=IMP]
            [GO:0036180 "filamentous growth of a population of unicellular
            organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
            "cellular response to biotic stimulus" evidence=IMP] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
            polymerase activity" evidence=IEA] InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 CGD:CAL0000919
            GO:GO:0071216 GO:GO:0036180 GO:GO:0003677 GO:GO:0006366
            GO:GO:0009267 Gene3D:2.40.40.20 InterPro:IPR009010
            EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899 eggNOG:COG0086
            GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1 STRING:Q5ACI7
            GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
        Length = 1728

 Score = 783 (280.7 bits), Expect = 2.2e-174, Sum P(4) = 2.2e-174
 Identities = 168/389 (43%), Positives = 247/389 (63%)

Query:    85 ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
             +L P  +L +FK ++  DC  +  +E   RPE ++IT + VPP  +RPS+  + +   E+
Sbjct:   201 LLTPSEILNVFKHISPEDCYKMGFNEDYARPEWMLITVLPVPPPPVRPSIAFNETARGED 260

Query:   142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQ-VA 199
             D+T +L  II+ N ++Q+ L    S    ++ +E L Q  VA Y+++D+ G P ++Q   
Sbjct:   261 DLTFKLADIIKANINVQR-LETDGSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTG 319

Query:   200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
             RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +A+ LTYPE 
Sbjct:   320 RPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEI 379

Query:   260 VSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
             V+ +NI KL + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+RHL 
Sbjct:   380 VTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVERHLM 437

Query:   319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
             D D VLFNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+ E 
Sbjct:   438 DDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPET 497

Query:   379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYMGD 436
             R+E   +  V   + +P++ + ++   QD L     +T +D F  YD+    +  CY   
Sbjct:   498 RSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQV---MNMCYWIP 554

Query:   437 GMDRVDLPTPAILKPVELWTGKQLFSVLI 465
               D V +P PA++KP +LWTGKQL S+ I
Sbjct:   555 NWDGV-IPPPAVVKPKQLWTGKQLLSLAI 582

 Score = 572 (206.4 bits), Expect = 2.2e-174, Sum P(4) = 2.2e-174
 Identities = 132/364 (36%), Positives = 202/364 (55%)

Query:   500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
             + + P D  +   + E++ G + K T+G     GL   ++R+ G    +   + + K+  
Sbjct:   596 DLLSPKDTGMLIVDGEIMFGVVDKKTVG-ATGGGLIHTVMREKGPKVCAELFSSIQKVVN 654

Query:   560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
              W+ ++GFSIGI D     +      K I E  +     I +    KL+ +PG    ++ 
Sbjct:   655 YWLLHNGFSIGIGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMTLRESF 714

Query:   620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
             E  ++ +LN+ R+ AG++   SL   N+   M   GSKGS INISQM ACVGQQ V G+R
Sbjct:   715 EHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKR 774

Query:   680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
              P GF DRSLPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DTAVKTA+T
Sbjct:   775 IPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET 834

Query:   740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 799
             GY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D   +E +S +          
Sbjct:   835 GYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDT--------- 885

Query:   800 VKATCPPAGQRY-LSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKF 858
             +  +     +RY +       ++ + L   GKE   +     L+K  + + ++L K  K+
Sbjct:   886 IPGSDESFERRYKIDVLDTENVISESLLESGKEIRGDV---QLQKILDEEYNQLLKDRKY 942

Query:   859 VEDI 862
             + ++
Sbjct:   943 LREV 946

 Score = 270 (100.1 bits), Expect = 2.2e-174, Sum P(4) = 2.2e-174
 Identities = 69/173 (39%), Positives = 103/173 (59%)

Query:   895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
             ++++   V  G  +G + AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEI+N AK 
Sbjct:  1052 TQFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKN 1111

Query:   955 ISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
             I TP +T  L+    +D E A ++V+  IE T L  V  S +I       + VI  D +T
Sbjct:  1112 IKTPAMTVFLDPEVASDIEKA-KIVQSAIEHTTLKNVTSSTEIYYDPDPRTTVIEDDYDT 1170

Query:  1012 IQDAHLCINADIVKESI-VQTP-KIKLKQQHIKVLDFRKLEIFPPVDKSKIHF 1062
             ++ A+  I    V+ESI  Q+P  ++L+    K+LD ++L +    +K   +F
Sbjct:  1171 VE-AYFAIPDQKVEESIDKQSPWLLRLELDRAKMLD-KQLTMAQVAEKISQNF 1221

 Score = 253 (94.1 bits), Expect = 2.2e-174, Sum P(4) = 2.2e-174
 Identities = 55/134 (41%), Positives = 75/134 (55%)

Query:  1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
             L  +G  L  VM   G+D  +T SN   EV   LGIEA R  +  EI   +   G  ++ 
Sbjct:  1308 LETDGVNLADVMAVPGVDSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNY 1367

Query:  1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
             RHM LL D+MT RG ++ ITR GI + D   LM  SFE+T + L +A+     D  +G+S
Sbjct:  1368 RHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAELDDCKGIS 1427

Query:  1228 ECIIMGIPMPLGTG 1241
             E +++G   PLGTG
Sbjct:  1428 ENVMLGQMAPLGTG 1441

 Score = 40 (19.1 bits), Expect = 5.4e-73, Sum P(2) = 5.4e-73
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query:  1112 GTGLQAVMGAEGIDGCKTKSNHI 1134
             G  +Q + G +GIDG + +   +
Sbjct:   861 GDIIQFIYGEDGIDGTQVEKQSV 883


>UNIPROTKB|Q5ACI7 [details] [associations]
            symbol:RPO21 "DNA-directed RNA polymerase" species:237561
            "Candida albicans SC5314" [GO:0009267 "cellular response to
            starvation" evidence=IMP] [GO:0030447 "filamentous growth"
            evidence=IMP] [GO:0036170 "filamentous growth of a population of
            unicellular organisms in response to starvation" evidence=IMP]
            [GO:0036180 "filamentous growth of a population of unicellular
            organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
            "cellular response to biotic stimulus" evidence=IMP]
            InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
            SMART:SM00663 CGD:CAL0000919 GO:GO:0071216 GO:GO:0036180
            GO:GO:0003677 GO:GO:0006366 GO:GO:0009267 Gene3D:2.40.40.20
            InterPro:IPR009010 EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899
            eggNOG:COG0086 GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1
            STRING:Q5ACI7 GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
        Length = 1728

 Score = 783 (280.7 bits), Expect = 2.2e-174, Sum P(4) = 2.2e-174
 Identities = 168/389 (43%), Positives = 247/389 (63%)

Query:    85 ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
             +L P  +L +FK ++  DC  +  +E   RPE ++IT + VPP  +RPS+  + +   E+
Sbjct:   201 LLTPSEILNVFKHISPEDCYKMGFNEDYARPEWMLITVLPVPPPPVRPSIAFNETARGED 260

Query:   142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQ-VA 199
             D+T +L  II+ N ++Q+ L    S    ++ +E L Q  VA Y+++D+ G P ++Q   
Sbjct:   261 DLTFKLADIIKANINVQR-LETDGSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTG 319

Query:   200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
             RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +A+ LTYPE 
Sbjct:   320 RPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEI 379

Query:   260 VSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
             V+ +NI KL + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+RHL 
Sbjct:   380 VTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVERHLM 437

Query:   319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
             D D VLFNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+ E 
Sbjct:   438 DDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPET 497

Query:   379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYMGD 436
             R+E   +  V   + +P++ + ++   QD L     +T +D F  YD+    +  CY   
Sbjct:   498 RSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQV---MNMCYWIP 554

Query:   437 GMDRVDLPTPAILKPVELWTGKQLFSVLI 465
               D V +P PA++KP +LWTGKQL S+ I
Sbjct:   555 NWDGV-IPPPAVVKPKQLWTGKQLLSLAI 582

 Score = 572 (206.4 bits), Expect = 2.2e-174, Sum P(4) = 2.2e-174
 Identities = 132/364 (36%), Positives = 202/364 (55%)

Query:   500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
             + + P D  +   + E++ G + K T+G     GL   ++R+ G    +   + + K+  
Sbjct:   596 DLLSPKDTGMLIVDGEIMFGVVDKKTVG-ATGGGLIHTVMREKGPKVCAELFSSIQKVVN 654

Query:   560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
              W+ ++GFSIGI D     +      K I E  +     I +    KL+ +PG    ++ 
Sbjct:   655 YWLLHNGFSIGIGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMTLRESF 714

Query:   620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
             E  ++ +LN+ R+ AG++   SL   N+   M   GSKGS INISQM ACVGQQ V G+R
Sbjct:   715 EHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKR 774

Query:   680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
              P GF DRSLPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DTAVKTA+T
Sbjct:   775 IPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET 834

Query:   740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 799
             GY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D   +E +S +          
Sbjct:   835 GYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDT--------- 885

Query:   800 VKATCPPAGQRY-LSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKF 858
             +  +     +RY +       ++ + L   GKE   +     L+K  + + ++L K  K+
Sbjct:   886 IPGSDESFERRYKIDVLDTENVISESLLESGKEIRGDV---QLQKILDEEYNQLLKDRKY 942

Query:   859 VEDI 862
             + ++
Sbjct:   943 LREV 946

 Score = 270 (100.1 bits), Expect = 2.2e-174, Sum P(4) = 2.2e-174
 Identities = 69/173 (39%), Positives = 103/173 (59%)

Query:   895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
             ++++   V  G  +G + AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEI+N AK 
Sbjct:  1052 TQFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKN 1111

Query:   955 ISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
             I TP +T  L+    +D E A ++V+  IE T L  V  S +I       + VI  D +T
Sbjct:  1112 IKTPAMTVFLDPEVASDIEKA-KIVQSAIEHTTLKNVTSSTEIYYDPDPRTTVIEDDYDT 1170

Query:  1012 IQDAHLCINADIVKESI-VQTP-KIKLKQQHIKVLDFRKLEIFPPVDKSKIHF 1062
             ++ A+  I    V+ESI  Q+P  ++L+    K+LD ++L +    +K   +F
Sbjct:  1171 VE-AYFAIPDQKVEESIDKQSPWLLRLELDRAKMLD-KQLTMAQVAEKISQNF 1221

 Score = 253 (94.1 bits), Expect = 2.2e-174, Sum P(4) = 2.2e-174
 Identities = 55/134 (41%), Positives = 75/134 (55%)

Query:  1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
             L  +G  L  VM   G+D  +T SN   EV   LGIEA R  +  EI   +   G  ++ 
Sbjct:  1308 LETDGVNLADVMAVPGVDSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNY 1367

Query:  1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
             RHM LL D+MT RG ++ ITR GI + D   LM  SFE+T + L +A+     D  +G+S
Sbjct:  1368 RHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAELDDCKGIS 1427

Query:  1228 ECIIMGIPMPLGTG 1241
             E +++G   PLGTG
Sbjct:  1428 ENVMLGQMAPLGTG 1441

 Score = 40 (19.1 bits), Expect = 5.4e-73, Sum P(2) = 5.4e-73
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query:  1112 GTGLQAVMGAEGIDGCKTKSNHI 1134
             G  +Q + G +GIDG + +   +
Sbjct:   861 GDIIQFIYGEDGIDGTQVEKQSV 883


>WB|WBGene00000123 [details] [associations]
            symbol:ama-1 species:6239 "Caenorhabditis elegans"
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA;IMP] [GO:0009792 "embryo development ending in birth
            or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0007052 "mitotic spindle organization"
            evidence=IMP] [GO:0010458 "exit from mitosis" evidence=IMP]
            [GO:0008356 "asymmetric cell division" evidence=IMP] [GO:0032502
            "developmental process" evidence=IMP] [GO:0006479 "protein
            methylation" evidence=IMP] [GO:0007369 "gastrulation" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0001055 "RNA polymerase II
            activity" evidence=IMP] [GO:0042789 "mRNA transcription from RNA
            polymerase II promoter" evidence=IMP] InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 GO:GO:0005634
            GO:GO:0009792 GO:GO:0040010 GO:GO:0007052 GO:GO:0010458
            GO:GO:0046872 GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0006479 GO:GO:0008356 GO:GO:0007369
            GO:GO:0042789 EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665
            EMBL:M29235 PIR:A34092 PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356
            STRING:P16356 PaxDb:P16356 EnsemblMetazoa:F36A4.7.1
            EnsemblMetazoa:F36A4.7.2 GeneID:177190 KEGG:cel:CELE_F36A4.7
            UCSC:F36A4.7 CTD:247749 WormBase:F36A4.7
            GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975 InParanoid:P16356
            OMA:KVLPWST NextBio:895720 GO:GO:0001055 Uniprot:P16356
        Length = 1856

 Score = 1276 (454.2 bits), Expect = 7.9e-174, Sum P(3) = 7.9e-174
 Identities = 289/710 (40%), Positives = 426/710 (60%)

Query:    85 ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
             +L    VL +F+++TD D  V+ +     RPE +I T + VPP+A+RP+V+  GS  N++
Sbjct:   209 MLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQD 268

Query:   142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQVA 199
             D+T +L  II+TN  LQ+   EAN A   +   +   LQ  VA  +++ + G+P + Q  
Sbjct:   269 DLTHKLSDIIKTNQQLQRN--EANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKG 326

Query:   200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
              RPL    QRLKGK+GR RGNL GKRV+++ RTVI+ DPNL I  V +P  +A+ LT+PE
Sbjct:   327 GRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPE 386

Query:   259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
              V+  N++KL++ +  G  +YPGA+ I   +G ARV          + L+ G  V+RH++
Sbjct:   387 IVTPFNVDKLQELVNRGDTQYPGAKYIIRENG-ARVDLRYHPRAADLHLQPGYRVERHMK 445

Query:   319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
             DGD+++FNRQP+LH+MS+M HR +I+PW T R N SV +PYNADFDGDEMN+H+PQ+ E 
Sbjct:   446 DGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLET 505

Query:   379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
             R E   +  V   L TP+  + ++   QD L +  ++T++D F D      +  Y+    
Sbjct:   506 RAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWD 565

Query:   439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
              +V  P PAILKP  LWTGKQ+FS++I P  N+ V        +T+S      + ++   
Sbjct:   566 GKV--PQPAILKPKPLWTGKQVFSLII-P-GNVNVL-------RTHST---HPDSEDSGP 611

Query:   499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
              + + P D  V   + EL+SG +   T+G    + L+ V L + G    +   + +  + 
Sbjct:   612 YKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTL-ELGYEIAANFYSHIQTVI 670

Query:   559 ARWIGNHGFSIGIDD-VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
               W+   G +IGI D +  +    D +  +     +V +V  K +N+  L+  PG    Q
Sbjct:   671 NAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDD-LEPTPGNTLRQ 729

Query:   618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
             T E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G
Sbjct:   730 TFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEG 789

Query:   678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
             +R P GF  R+LPHF +    P +KGFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA
Sbjct:   790 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 849

Query:   738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
             +TGY+ RRLIKA+E + + YD +VRN+   +VQ  YG+DG+D   +E ++
Sbjct:   850 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQN 899

 Score = 247 (92.0 bits), Expect = 7.9e-174, Sum P(3) = 7.9e-174
 Identities = 54/134 (40%), Positives = 79/134 (58%)

Query:  1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
             L  +GT L  V+    ID  +T SN I E+ + LGIEA R  I  E++  +   G  ++ 
Sbjct:  1328 LETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNY 1387

Query:  1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
             RH+ LL D+MT +G ++ ITR GI + +   LM  SFE+T D L  A+V+  +D ++GVS
Sbjct:  1388 RHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVS 1447

Query:  1228 ECIIMGIPMPLGTG 1241
             E I++G     GTG
Sbjct:  1448 ENIMLGQLARCGTG 1461

 Score = 220 (82.5 bits), Expect = 7.9e-174, Sum P(3) = 7.9e-174
 Identities = 52/121 (42%), Positives = 73/121 (60%)

Query:   895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
             SR++    + G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN +K 
Sbjct:  1068 SRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKT 1127

Query:   955 ISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
             + TP +T  L      D E A  V+  ++E T L +V  +  I       + VIA D E 
Sbjct:  1128 LKTPSLTVFLTGAAAKDPEKAKDVLC-KLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEW 1186

Query:  1012 I 1012
             +
Sbjct:  1187 V 1187

 Score = 56 (24.8 bits), Expect = 2.1e-32, Sum P(4) = 2.1e-32
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query:   454 LWTGKQLFSVLIRPHANMR-VYVNLTVKEKTYSNKLIRTEGDEEI 497
             +W  +++F V +R   N+  ++V   V+E   S KLI   G++EI
Sbjct:   981 IWNAQKIFKVDLRKPVNLSPLHVISGVRE--LSKKLIIVSGNDEI 1023

 Score = 40 (19.1 bits), Expect = 9.2e-31, Sum P(4) = 9.2e-31
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query:   440 RVDLPTPAILKPVELWTG-KQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRT 491
             +VDL  P  L P+ + +G ++L   LI    N  +            N L+R+
Sbjct:   989 KVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRS 1041

 Score = 38 (18.4 bits), Expect = 9.6e-131, Sum P(2) = 9.6e-131
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query:   976 VKGRIEKTLLGQVAK 990
             VKG  E  +LGQ+A+
Sbjct:  1443 VKGVSENIMLGQLAR 1457

 Score = 38 (18.4 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query:   868 SQILEEVTHKTSGITEKQLEVFIQ---TCFSRYRVKRVEAGTAIGAIGAQSI 916
             +QIL +   +T    +K L  F        S  +  ++     I  +G Q++
Sbjct:   736 NQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNV 787

 Score = 37 (18.1 bits), Expect = 2.1e-32, Sum P(4) = 2.1e-32
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query:    29 AVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQE 64
             AVK    GYI   + KA+  + + +D + V  SL +
Sbjct:   845 AVKTAETGYIQRRLIKAMESVMVNYDGT-VRNSLAQ 879


>UNIPROTKB|P16356 [details] [associations]
            symbol:ama-1 "DNA-directed RNA polymerase II subunit RPB1"
            species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
            GO:GO:0040010 GO:GO:0007052 GO:GO:0010458 GO:GO:0046872
            GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0006479 GO:GO:0008356 GO:GO:0007369 GO:GO:0042789
            EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665 EMBL:M29235 PIR:A34092
            PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356 STRING:P16356
            PaxDb:P16356 EnsemblMetazoa:F36A4.7.1 EnsemblMetazoa:F36A4.7.2
            GeneID:177190 KEGG:cel:CELE_F36A4.7 UCSC:F36A4.7 CTD:247749
            WormBase:F36A4.7 GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975
            InParanoid:P16356 OMA:KVLPWST NextBio:895720 GO:GO:0001055
            Uniprot:P16356
        Length = 1856

 Score = 1276 (454.2 bits), Expect = 7.9e-174, Sum P(3) = 7.9e-174
 Identities = 289/710 (40%), Positives = 426/710 (60%)

Query:    85 ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
             +L    VL +F+++TD D  V+ +     RPE +I T + VPP+A+RP+V+  GS  N++
Sbjct:   209 MLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQD 268

Query:   142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQVA 199
             D+T +L  II+TN  LQ+   EAN A   +   +   LQ  VA  +++ + G+P + Q  
Sbjct:   269 DLTHKLSDIIKTNQQLQRN--EANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKG 326

Query:   200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
              RPL    QRLKGK+GR RGNL GKRV+++ RTVI+ DPNL I  V +P  +A+ LT+PE
Sbjct:   327 GRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPE 386

Query:   259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
              V+  N++KL++ +  G  +YPGA+ I   +G ARV          + L+ G  V+RH++
Sbjct:   387 IVTPFNVDKLQELVNRGDTQYPGAKYIIRENG-ARVDLRYHPRAADLHLQPGYRVERHMK 445

Query:   319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
             DGD+++FNRQP+LH+MS+M HR +I+PW T R N SV +PYNADFDGDEMN+H+PQ+ E 
Sbjct:   446 DGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLET 505

Query:   379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
             R E   +  V   L TP+  + ++   QD L +  ++T++D F D      +  Y+    
Sbjct:   506 RAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWD 565

Query:   439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
              +V  P PAILKP  LWTGKQ+FS++I P  N+ V        +T+S      + ++   
Sbjct:   566 GKV--PQPAILKPKPLWTGKQVFSLII-P-GNVNVL-------RTHST---HPDSEDSGP 611

Query:   499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
              + + P D  V   + EL+SG +   T+G    + L+ V L + G    +   + +  + 
Sbjct:   612 YKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTL-ELGYEIAANFYSHIQTVI 670

Query:   559 ARWIGNHGFSIGIDD-VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
               W+   G +IGI D +  +    D +  +     +V +V  K +N+  L+  PG    Q
Sbjct:   671 NAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDD-LEPTPGNTLRQ 729

Query:   618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
             T E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G
Sbjct:   730 TFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEG 789

Query:   678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
             +R P GF  R+LPHF +    P +KGFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA
Sbjct:   790 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 849

Query:   738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
             +TGY+ RRLIKA+E + + YD +VRN+   +VQ  YG+DG+D   +E ++
Sbjct:   850 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQN 899

 Score = 247 (92.0 bits), Expect = 7.9e-174, Sum P(3) = 7.9e-174
 Identities = 54/134 (40%), Positives = 79/134 (58%)

Query:  1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
             L  +GT L  V+    ID  +T SN I E+ + LGIEA R  I  E++  +   G  ++ 
Sbjct:  1328 LETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNY 1387

Query:  1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
             RH+ LL D+MT +G ++ ITR GI + +   LM  SFE+T D L  A+V+  +D ++GVS
Sbjct:  1388 RHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVS 1447

Query:  1228 ECIIMGIPMPLGTG 1241
             E I++G     GTG
Sbjct:  1448 ENIMLGQLARCGTG 1461

 Score = 220 (82.5 bits), Expect = 7.9e-174, Sum P(3) = 7.9e-174
 Identities = 52/121 (42%), Positives = 73/121 (60%)

Query:   895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
             SR++    + G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN +K 
Sbjct:  1068 SRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKT 1127

Query:   955 ISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
             + TP +T  L      D E A  V+  ++E T L +V  +  I       + VIA D E 
Sbjct:  1128 LKTPSLTVFLTGAAAKDPEKAKDVLC-KLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEW 1186

Query:  1012 I 1012
             +
Sbjct:  1187 V 1187

 Score = 56 (24.8 bits), Expect = 2.1e-32, Sum P(4) = 2.1e-32
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query:   454 LWTGKQLFSVLIRPHANMR-VYVNLTVKEKTYSNKLIRTEGDEEI 497
             +W  +++F V +R   N+  ++V   V+E   S KLI   G++EI
Sbjct:   981 IWNAQKIFKVDLRKPVNLSPLHVISGVRE--LSKKLIIVSGNDEI 1023

 Score = 40 (19.1 bits), Expect = 9.2e-31, Sum P(4) = 9.2e-31
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query:   440 RVDLPTPAILKPVELWTG-KQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRT 491
             +VDL  P  L P+ + +G ++L   LI    N  +            N L+R+
Sbjct:   989 KVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRS 1041

 Score = 38 (18.4 bits), Expect = 9.6e-131, Sum P(2) = 9.6e-131
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query:   976 VKGRIEKTLLGQVAK 990
             VKG  E  +LGQ+A+
Sbjct:  1443 VKGVSENIMLGQLAR 1457

 Score = 38 (18.4 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query:   868 SQILEEVTHKTSGITEKQLEVFIQ---TCFSRYRVKRVEAGTAIGAIGAQSI 916
             +QIL +   +T    +K L  F        S  +  ++     I  +G Q++
Sbjct:   736 NQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNV 787

 Score = 37 (18.1 bits), Expect = 2.1e-32, Sum P(4) = 2.1e-32
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query:    29 AVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQE 64
             AVK    GYI   + KA+  + + +D + V  SL +
Sbjct:   845 AVKTAETGYIQRRLIKAMESVMVNYDGT-VRNSLAQ 879


>ASPGD|ASPL0000054301 [details] [associations]
            symbol:AN0809 species:162425 "Emericella nidulans"
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 EMBL:BN001308 GO:GO:0003677
            GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
            EMBL:AACD01000013 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
            HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
            RefSeq:XP_658413.1 STRING:Q5BF71 EnsemblFungi:CADANIAT00001852
            GeneID:2876587 KEGG:ani:AN0809.2 Uniprot:Q5BF71
        Length = 1745

 Score = 779 (279.3 bits), Expect = 1.4e-172, Sum P(4) = 1.4e-172
 Identities = 171/396 (43%), Positives = 248/396 (62%)

Query:    85 ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QS 138
             I+ P   L +F+ ++  D  ++ LS    RPE +I+T + VPP  +RPSV++ GS   Q 
Sbjct:   212 IITPQMALNIFRNISHEDVRIMGLSNDYARPEWMILTVLPVPPPPVRPSVVVGGSTSGQR 271

Query:   139 NENDITERLKRIIQTNASLQQELVEANSAFKSLAG-WETL-QVEVAQYINSDVRGVPFSM 196
              E+D+T +L  I++ N ++Q+   E   A + +   +E+L Q  +A Y+++D+ G P +M
Sbjct:   272 GEDDLTYKLAEIVRANQNVQR--CEQEGAPEHVVREFESLLQYHIATYMDNDIAGQPKAM 329

Query:   197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
             Q + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +P  +AR LT
Sbjct:   330 QKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIARTLT 389

Query:   256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
             YPE V+ +NIEKL+Q + NGP+++PGAR I   +G  R+     +     +L  G  V+R
Sbjct:   390 YPEVVTPYNIEKLQQLVMNGPNEHPGARYIVRDNGE-RIDLRHAKRAGGQQLLYGWKVER 448

Query:   316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
             HL DGDV+LFNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+
Sbjct:   449 HLMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 508

Query:   376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
             EE+R E   L  V  N+ +P+    L+   QD L   + I R+D F  +     +  ++ 
Sbjct:   509 EESRAELQQLALVPQNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIMMWVP 568

Query:   436 DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANM 471
             D  D V +P PAI KP   WTGKQ+ S++     N+
Sbjct:   569 D-WDGV-IPPPAIFKPRPRWTGKQMISMVFPSGLNL 602

 Score = 597 (215.2 bits), Expect = 1.4e-172, Sum P(4) = 1.4e-172
 Identities = 140/348 (40%), Positives = 201/348 (57%)

Query:   443 LPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI-RIET 501
             +P PAI KP   WTGKQ+ S++     N                 L+RT+        E 
Sbjct:   574 IPPPAIFKPRPRWTGKQMISMVFPSGLN-----------------LMRTDSKGAAPSSEK 616

Query:   502 MCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
               P  DG V     +L+ G L K  +G  +  G+  ++  +YGA A     N    +   
Sbjct:   617 YSPLQDGNVLIHEGQLMYGMLNKKIVG-ASGGGVIHIIFNEYGADAAVAFFNGAQAIVNY 675

Query:   561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYN----EGKLQLKPGCDAA 616
             W+ ++GFSIGI D  P    +D+  + I E      ++++E      + KL+  PG +  
Sbjct:   676 WLLHNGFSIGIGDTIP----NDQTIQAIEECVRKRKLEVEEITATATQNKLEPLPGMNVR 731

Query:   617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
             +T E+ ++  LN  R++AG A   SL   N+ + MS+ GSKGS INISQM A VGQQ V 
Sbjct:   732 ETFESKVSVALNTARDEAGTATEKSLKDLNNAVQMSRSGSKGSIINISQMTAVVGQQMVE 791

Query:   677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
             G+R   GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAVKT
Sbjct:   792 GKRIAFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 851

Query:   737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
             A+TGY+ R+L+KALE++ ++YD +VRN+ G I+QF+YG+DG+D A++E
Sbjct:   852 AETGYIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAHIE 899

 Score = 249 (92.7 bits), Expect = 1.4e-172, Sum P(4) = 1.4e-172
 Identities = 53/134 (39%), Positives = 73/134 (54%)

Query:  1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
             L   G+ L  V+   G+D  +T SN   EV +  GIEAAR  ++ E    +   G  ++ 
Sbjct:  1332 LETSGSSLAEVLAIPGVDATRTYSNQFIEVFEVFGIEAARAAVLREFTVVLSFDGSYVNH 1391

Query:  1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
             RH+ LL D+MT RG +  +TR GI + D   LM  SFE+T + L  A+  G  D   GVS
Sbjct:  1392 RHLALLVDVMTMRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVS 1451

Query:  1228 ECIIMGIPMPLGTG 1241
             E +I+G   P GTG
Sbjct:  1452 ENLILGQMAPAGTG 1465

 Score = 237 (88.5 bits), Expect = 1.4e-172, Sum P(4) = 1.4e-172
 Identities = 56/154 (36%), Positives = 88/154 (57%)

Query:   895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
             SR+       G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A  
Sbjct:  1071 SRFAKAAAAPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATN 1130

Query:   955 ISTPIITA--ELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
             I TP +T   E E   ++  A+ ++  +E T L  + ++ +I     + + VI  D + +
Sbjct:  1131 IKTPSMTVYQEPERAHDKEGAKQLRSAVEYTNLRSITEATEIYYDPDIQTTVIENDRDMV 1190

Query:  1013 QDAHLCINADIVKESIVQTP-KIKLKQQHIKVLD 1045
             + ++  I  D+  +S  Q+   +++     K+LD
Sbjct:  1191 E-SYFIIPEDVNDDSSRQSKWLLRIILSRAKLLD 1223

 Score = 41 (19.5 bits), Expect = 3.2e-34, Sum P(3) = 3.2e-34
 Identities = 16/69 (23%), Positives = 28/69 (40%)

Query:     1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             + N  +  L  T+     +     +   AVK    GYI   + KA+  + + +D + V  
Sbjct:   820 VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGT-VRN 878

Query:    61 SLQEFASAI 69
             SL +    I
Sbjct:   879 SLGDIIQFI 887


>UNIPROTKB|G4MT89 [details] [associations]
            symbol:MGG_04652 "DNA-directed RNA polymerase"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 PROSITE:PS00115
            SMART:SM00663 GO:GO:0003677 GO:GO:0006366 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0043581 EMBL:CM001232 GO:GO:0003899
            GO:GO:0005665 KO:K03006 RefSeq:XP_003713642.1
            EnsemblFungi:MGG_04652T0 GeneID:2678092 KEGG:mgr:MGG_04652
            Uniprot:G4MT89
        Length = 1757

 Score = 785 (281.4 bits), Expect = 3.8e-168, Sum P(4) = 3.8e-168
 Identities = 170/413 (41%), Positives = 255/413 (61%)

Query:    60 ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLI 116
             ++LQ +A  +   +E      V   ++ P     + K + + D   + L++   RPE LI
Sbjct:   188 KALQLYAK-VEEAREEGMKKEVKDKLITPEQAHHILKHIPEDDLWKMGLNKDYARPEWLI 246

Query:   117 ITNIAVPPIAIRPSVIMDG-SQS--NENDITERLKRIIQTNASLQQELVEANSAFKSLAG 173
             +T + VPP  +RPS+ +DG SQ   +E+D+T +L  II+ N +++Q   E          
Sbjct:   247 VTVLPVPPPPVRPSISVDGTSQGMRSEDDLTYKLGDIIRANGNVKQAHAEGAPNHICTEF 306

Query:   174 WETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTV 232
              E LQ  VA Y+++D+  +P S+Q + RP+     RLKGK+GR RGNL GKRV+++ RTV
Sbjct:   307 EELLQYHVATYMDNDIASIPRSLQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTV 366

Query:   233 ISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA 292
             I+ D N+ + EV +P  +AR LTYPE V+ HNI++L Q + NGP+++PGA+ I   DGT 
Sbjct:   367 ITGDANISLHEVGVPRSIARTLTYPETVTPHNIDRLHQYVVNGPNEHPGAKYIVRTDGT- 425

Query:   293 RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 352
             R+     +N+ + +L+ G  V+RHL  GD ++FNRQPSLH+ S+M H+ R+MP+ T R N
Sbjct:   426 RIDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNRQPSLHKESMMGHQVRVMPYSTFRLN 485

Query:   353 ESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSS 412
              SV +PYNADFDGDEMN+HVPQTEE R E   L  V  N+ +P+    L+   QD L  +
Sbjct:   486 LSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNSPLMGIVQDTLAGT 545

Query:   413 FLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLI 465
             + + R+D F  + A   +  ++ D  D + +P PAIL+P   WTGKQ+ S++I
Sbjct:   546 YKLCRRDVFLTKEAVMDIMLWVPD-WDGI-IPQPAILRPRPRWTGKQIISMVI 596

 Score = 549 (198.3 bits), Expect = 3.8e-168, Sum P(4) = 3.8e-168
 Identities = 122/289 (42%), Positives = 173/289 (59%)

Query:   505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
             ND  +  ++ EL+ G L K  +G  +  G+  +   + G       +N   ++   W+ +
Sbjct:   612 NDDALLIQSGELMFGLLTKKNVGAAS-GGIIHICYNEQGPARAMAFLNGCQRVVNYWLLH 670

Query:   565 HGFSIGIDDVQPKKELSDKKGKLISENY-EVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
             +G SIGI D  P     +K    I+E   EV  +        +L+  PG +  +T E+ +
Sbjct:   671 NGHSIGIGDTIPDPVTIEKIQAHINEQKAEVAELTDLA-TTNRLEALPGMNIRETFESKV 729

Query:   624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
             +  LN  RE AG     SL   N+ + MS+ GSKGS INISQM A VGQQ V G+R P G
Sbjct:   730 SKALNTAREKAGTTTEKSLKDINNAVTMSRSGSKGSSINISQMTALVGQQIVEGKRIPFG 789

Query:   684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
             F  R+LPHF +    P A+GFV NS+  GL+ +EFFFH M GREGL+DTAVKTA+TGY+ 
Sbjct:   790 FKYRTLPHFTKDDFSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQ 849

Query:   744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLN 792
             RRL+KALED++ +YD +VRN+ G I+QF+YG+DG+D   +E +  + LN
Sbjct:   850 RRLVKALEDVAAKYDGTVRNSLGDIIQFIYGEDGLDGMAIEKQKMDHLN 898

 Score = 271 (100.5 bits), Expect = 3.8e-168, Sum P(4) = 3.8e-168
 Identities = 49/135 (36%), Positives = 83/135 (61%)

Query:  1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
             +GT L+ V+  +G+D  +T +N ++++   LGIEAAR  ++ E+ + +   G  ++ RH+
Sbjct:  1331 QGTSLRQVLCVDGVDSVRTLTNDLYQIVDLLGIEAARTALLGELTQVLAFDGSYVNHRHL 1390

Query:  1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
              LL D+MT+RG +  +TR GI + D   LM  SFE+T + L  A+  G  D   G+SE +
Sbjct:  1391 ALLVDVMTYRGSIAAVTRHGINRADTGALMRCSFEETVEILLEAAAIGELDDCRGISENV 1450

Query:  1231 IMGIPMPLGTGILKI 1245
             ++G   P+GTG  ++
Sbjct:  1451 MLGQLAPMGTGAFEV 1465

 Score = 214 (80.4 bits), Expect = 3.8e-168, Sum P(4) = 3.8e-168
 Identities = 67/212 (31%), Positives = 105/212 (49%)

Query:   850 DKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEV-F---IQTCFSRYRVKRVEAG 905
             D + K+  +   I +  K+Q+   +  K   + E+   + F   I    SR++   V  G
Sbjct:  1017 DPISKEANYNSSILF--KAQLRSRLAFKRLAVRERLNRIAFDHVIGEMESRWQRSFVSPG 1074

Query:   906 TAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELE 965
               +G + AQSIGEP TQMTL TFHF G++S N+T GVPR+KEI+N +  I TP +   L+
Sbjct:  1075 EMVGVLAAQSIGEPATQMTLNTFHFTGISSKNVTLGVPRLKEILNVSAEIKTPGMVVRLD 1134

Query:   966 CN---D--NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCIN 1020
                  D   ENA + ++  +E T L  V    +I     + +  I  D + ++  H  I 
Sbjct:  1135 PKMYPDFKQENA-KTLRSLVEHTNLRSVTAMTEIYYDPEIQTTTIDEDADMLE-GHYLIP 1192

Query:  1021 ADIVKESIVQTP-KIKLKQQHIKVLDFRKLEI 1051
              +   E   Q+   ++L     K+LD + L I
Sbjct:  1193 EEHQDEPSNQSRWLLRLTLDRQKMLD-KNLHI 1223

 Score = 41 (19.5 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
 Identities = 12/50 (24%), Positives = 24/50 (48%)

Query:   236 DPNLKITEVAIPIRMAR----ILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
             D NL I +VA  I+ A     ++ + +  +D  + ++R  I+   +   G
Sbjct:  1218 DKNLHIEDVAASIKGAYASDLVVVHSDNNADEQVIRMRHVIKGDEEDKDG 1267

 Score = 40 (19.1 bits), Expect = 4.9e-126, Sum P(3) = 4.9e-126
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query:  1112 GTGLQAVMGAEGIDGC---KTKSNHI 1134
             G  +Q + G +G+DG    K K +H+
Sbjct:   872 GDIIQFIYGEDGLDGMAIEKQKMDHL 897


>SGD|S000002299 [details] [associations]
            symbol:RPO21 "RNA polymerase II largest subunit B220"
            species:4932 "Saccharomyces cerevisiae" [GO:0016740 "transferase
            activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
            activity" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA;IMP] [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005665
            "DNA-directed RNA polymerase II, core complex" evidence=IEA;IDA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed
            RNA polymerase activity" evidence=IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 SGD:S000002299 GO:GO:0005739
            GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0006366
            Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:X96876 EMBL:U27182
            GO:GO:0003899 PDB:4GWQ PDBsum:4GWQ PDB:2LO6 PDBsum:2LO6
            eggNOG:COG0086 GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
            PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
            PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
            PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
            PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
            PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
            PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
            PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
            PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
            PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
            PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
            PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
            PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
            PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50
            PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV
            PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA
            PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM
            PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
            PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5
            PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT
            PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92
            PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI
            PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM
            PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU
            PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ
            PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y
            PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD
            PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16 PDBsum:3S17
            PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D
            PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E
            PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K
            PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS
            HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
            EMBL:X03128 EMBL:Z74188 PIR:S67686 RefSeq:NP_010141.1 PDB:2L0I
            PDBsum:2L0I ProteinModelPortal:P04050 SMR:P04050 DIP:DIP-611N
            IntAct:P04050 MINT:MINT-432838 STRING:P04050 PaxDb:P04050
            PeptideAtlas:P04050 EnsemblFungi:YDL140C GeneID:851415
            KEGG:sce:YDL140C CYGD:YDL140c GeneTree:ENSGT00700000105212
            EvolutionaryTrace:P04050 NextBio:968606 ArrayExpress:P04050
            Genevestigator:P04050 GermOnline:YDL140C Uniprot:P04050
        Length = 1733

 Score = 770 (276.1 bits), Expect = 7.4e-168, Sum P(4) = 7.4e-168
 Identities = 168/388 (43%), Positives = 249/388 (64%)

Query:    85 ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
             +L+   +L +FK ++  D   L  +E   RPE +I+T + VPP  +RPS+  + SQ  E+
Sbjct:   201 VLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGED 260

Query:   142 DITERLKRIIQTNASLQQELVEANSA-FKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA 199
             D+T +L  I++ N SL  E +E N A   ++   E+L Q  VA Y+++D+ G P ++Q +
Sbjct:   261 DLTFKLADILKANISL--ETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKS 318

Query:   200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
              RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +A+ LTYPE
Sbjct:   319 GRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPE 378

Query:   259 RVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHL 317
              V+ +NI++L Q ++NGP+++PGA+ +IR       + Y K      ++L+ G  V+RH+
Sbjct:   379 VVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGD--IQLQYGWKVERHI 436

Query:   318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
              D D VLFNRQPSLH+MS+M HR +++P+ T R N SV +PYNADFDGDEMN+HVPQ+EE
Sbjct:   437 MDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEE 496

Query:   378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
              R E   L  V   + +P++ +  +   QD L     +T +DTF +      M  ++ D 
Sbjct:   497 TRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPD- 555

Query:   438 MDRVDLPTPAILKPVELWTGKQLFSVLI 465
              D V +PTPAI+KP  LW+GKQ+ SV I
Sbjct:   556 WDGV-IPTPAIIKPKPLWSGKQILSVAI 582

 Score = 568 (205.0 bits), Expect = 7.4e-168, Sum P(4) = 7.4e-168
 Identities = 123/287 (42%), Positives = 174/287 (60%)

Query:   502 MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARW 561
             + P D  +   + ++I G + K T+G+ N  GL  V+ R+ G    +     + K+   W
Sbjct:   598 LSPKDNGMLIIDGQIIFGVVEKKTVGSSN-GGLIHVVTREKGPQVCAKLFGNIQKVVNFW 656

Query:   562 IGNHGFSIGIDDVQPKKELSDKKGKLISE-NYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
             + ++GFS GI D         +  + I+E   +V +V  KE     L  K G    ++ E
Sbjct:   657 LLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVT-KEAQANLLTAKHGMTLRESFE 715

Query:   621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
               +   LN  R+ AG+    +L   N+   M   GSKGS INI+QM ACVGQQSV G+R 
Sbjct:   716 DNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRI 775

Query:   681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
               GF+DR+LPHF +    P +KGFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+TG
Sbjct:   776 AFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETG 835

Query:   741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
             Y+ RRL+KALED+ + YDN+ RN+ G ++QF+YG+DGMD A++E +S
Sbjct:   836 YIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQS 882

 Score = 242 (90.2 bits), Expect = 7.4e-168, Sum P(4) = 7.4e-168
 Identities = 58/152 (38%), Positives = 85/152 (55%)

Query:   881 ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
             +T++  +  +    +++    V  G  +G + AQSIGEP TQMTL TFHFAGVAS  +T 
Sbjct:  1037 LTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTS 1096

Query:   941 GVPRIKEIINGAKRISTPIITAELECND--NENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
             GVPR+KEI+N AK + TP +T  LE     ++  A++++  IE T L  V  + +I    
Sbjct:  1097 GVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDP 1156

Query:   999 RLASIVIALDMETIQDAHLCINADIVKESIVQ 1030
                S VI  D E IQ  H  +  +  ++S  Q
Sbjct:  1157 DPRSTVIPEDEEIIQ-LHFSLLDEEAEQSFDQ 1187

 Score = 238 (88.8 bits), Expect = 7.4e-168, Sum P(4) = 7.4e-168
 Identities = 49/138 (35%), Positives = 74/138 (53%)

Query:  1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
             L  +G  L  VM   GID  +  +N   ++ + LGIEA R  +  E+   + + G  ++ 
Sbjct:  1306 LETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNY 1365

Query:  1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
             RHM LL D+MT +G +  +TR G  + +   LM  SFE+T + LF A  +   D   GVS
Sbjct:  1366 RHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVS 1425

Query:  1228 ECIIMGIPMPLGTGILKI 1245
             E +I+G   P+GTG   +
Sbjct:  1426 ENVILGQMAPIGTGAFDV 1443

 Score = 45 (20.9 bits), Expect = 5.2e-34, Sum P(3) = 5.2e-34
 Identities = 18/57 (31%), Positives = 25/57 (43%)

Query:   364 DGDEMNMHVPQTEEARTEAL-LLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
             DG  M        EA+ + L +    Q NL T K+G  L  S +D +   FL   +D
Sbjct:   672 DGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVR-FLNEARD 727

 Score = 42 (19.8 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
 Identities = 14/63 (22%), Positives = 32/63 (50%)

Query:    96 KRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNA 155
             K+    D  V++  +  EKLII    V    +RP  +   +++ E+ + ++++  +  N 
Sbjct:  1217 KQTFKNDLFVIWSEDNDEKLII-RCRV----VRPKSLDAETEAEEDHMLKKIENTMLENI 1271

Query:   156 SLQ 158
             +L+
Sbjct:  1272 TLR 1274

 Score = 40 (19.1 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
 Identities = 16/75 (21%), Positives = 30/75 (40%)

Query:   603 NEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPIN 662
             N  ++   PG D  +       DI+  +  +AG+A +    ++    + +   S GS +N
Sbjct:  1312 NLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAAL----YKE---VYNVIASDGSYVN 1364

Query:   663 ISQMVACVGQQSVGG 677
                M   V   +  G
Sbjct:  1365 YRHMALLVDVMTTQG 1379

 Score = 37 (18.1 bits), Expect = 3.5e-33, Sum P(3) = 3.5e-33
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query:    29 AVKCPRCGYINGMVKKAVAVLGIIHDRS 56
             AVK    GYI   + KA+  + + +D +
Sbjct:   828 AVKTAETGYIQRRLVKALEDIMVHYDNT 855


>UNIPROTKB|I3LJR4 [details] [associations]
            symbol:POLR2A "DNA-directed RNA polymerase" species:9823
            "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04992
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            GeneTree:ENSGT00700000104490 EMBL:FP565284
            Ensembl:ENSSSCT00000029425 Uniprot:I3LJR4
        Length = 1010

 Score = 1286 (457.8 bits), Expect = 1.1e-133, Sum P(2) = 1.1e-133
 Identities = 300/779 (38%), Positives = 453/779 (58%)

Query:    85 ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
             +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct:   215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query:   142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
             D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct:   275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query:   201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
             PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct:   335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query:   261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
             +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct:   395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query:   320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
             GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct:   453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query:   380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
              E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct:   513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query:   440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
             +V  P PAILKP  LWTGKQ+FS++I  H N           +T+S      + ++    
Sbjct:   573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCI---------RTHST---HPDDEDSGPY 618

Query:   500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
             + + P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  +  
Sbjct:   619 KHISPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVIN 677

Query:   560 RWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    QT
Sbjct:   678 NWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNN-ELEPTPGNTLRQT 736

Query:   619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
              E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G+
Sbjct:   737 FENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGK 796

Query:   679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
             R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA+
Sbjct:   797 RIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAE 856

Query:   739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
             TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+      G+S E  N   L  
Sbjct:   857 TGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL-----AGESVEFQNLATLKP 911

Query:   799 KVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFL-NSLRKFFEGQQDKLDKKI 856
               KA        Y + + +   +++ L    K+  S A + N L + FE  ++  D+++
Sbjct:   912 SNKAFEKKFRFDYTNERALRRTLQEDLV---KDVLSNAHIQNELEREFERMRE--DREV 965

 Score = 45 (20.9 bits), Expect = 1.1e-133, Sum P(2) = 1.1e-133
 Identities = 18/70 (25%), Positives = 31/70 (44%)

Query:     4 PKMEALRKTDLMKSIVKK---CSTMASKAVKCP-RCGYINGMVKKAVAVLGIIHDRSKVT 59
             PK+  L   D  + ++++   C T A    +CP   G+I   + K V  +G +    KV 
Sbjct:    52 PKLGGLM--DPRQGVIERTGRCQTCAGNMTECPGHFGHIE--LAKPVFHVGFLVKTMKVL 107

Query:    60 ESLQEFASAI 69
               +  F S +
Sbjct:   108 RCVCFFCSKL 117


>DICTYBASE|DDB_G0279193 [details] [associations]
            symbol:rpb1 "RNA polymerase II core subunit"
            species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
            [GO:0016740 "transferase activity" evidence=IEA] [GO:0044351
            "macropinocytosis" evidence=RCA] InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 dictyBase:DDB_G0279193
            GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
            GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
            EMBL:AAFI02000030 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
            OMA:KVLPWST EMBL:S52651 PIR:A56823 RefSeq:XP_641735.1 STRING:P35084
            PRIDE:P35084 EnsemblProtists:DDB0215406 GeneID:8621932
            KEGG:ddi:DDB_G0279193 KO:K03006 ProtClustDB:CLSZ2428993
            Uniprot:P35084
        Length = 1727

 Score = 821 (294.1 bits), Expect = 1.0e-121, Sum P(4) = 1.0e-121
 Identities = 181/423 (42%), Positives = 267/423 (63%)

Query:    85 ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
             +L+   VL + KR+ D D   + ++    R + +I T + VPP  +RPS++MD S   E+
Sbjct:   206 VLSAERVLNILKRIKDEDSRAMGINPDWARADWMIATVLPVPPPPVRPSIMMDTSTRGED 265

Query:   142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQVA 199
             D+T +L  I++ N  LQ++  E N A   +    T  LQ  VA Y+++++ G+P + Q +
Sbjct:   266 DLTHKLADIVKANRELQRQ--EKNGAPAHIIAEATQFLQFHVATYVDNEIPGLPQAQQRS 323

Query:   200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
              RPL    QRLKGK+GR RGNL GKRV+++ RTVI+ DPNL I +V +P  +A  LTYPE
Sbjct:   324 GRPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPE 383

Query:   259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHL 317
              V+  NI+K+R+ I+NGP ++PGA+ I   DGT   L  +F  +++   L+ G  V+RH+
Sbjct:   384 TVTPFNIDKMRELIRNGPSEHPGAKYIIREDGTRFDL--RFVKKVSDTHLECGYKVERHI 441

Query:   318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
              DGDVV+FNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQT E
Sbjct:   442 NDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLE 501

Query:   378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
              R E + +M V   + +P++   ++   QD L  S L T++D F ++     +  ++   
Sbjct:   502 TRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNILMWLPSW 561

Query:   438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
               +V  P PAILKP +LWTGKQLFS++I P  N+  + + T  +K   N+   + GD  +
Sbjct:   562 DGKV--PPPAILKPKQLWTGKQLFSLII-PDINLIRFTS-THNDKE-PNEC--SAGDTRV 614

Query:   498 RIE 500
              IE
Sbjct:   615 IIE 617

 Score = 569 (205.4 bits), Expect = 5.3e-93, Sum P(3) = 5.3e-93
 Identities = 143/411 (34%), Positives = 217/411 (52%)

Query:   418 KDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHA--NMRVYV 475
             +DT      F+   C+M       DL    IL  +  W GK     +++P      +   
Sbjct:   530 QDTLLGSRLFTKRDCFM-----EKDL-VMNILMWLPSWDGKVPPPAILKPKQLWTGKQLF 583

Query:   476 NLTVKEKTYSNKLIRTEGDEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGL 534
             +L + +     +   T  D+E      C   D  V     EL++G L K +LG  N   +
Sbjct:   584 SLIIPDINLI-RFTSTHNDKE---PNECSAGDTRVIIERGELLAGILCKRSLGAAN-GSI 638

Query:   535 YSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISE-NYE 593
               V++ ++G       +++   +   W+ N GF++GI D         K    IS    +
Sbjct:   639 IHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQ 698

Query:   594 VCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQ 653
             V  + IK  N+ + + +PG    +T E  +  +LN+ R+ AG +   SL   N+   M  
Sbjct:   699 VKELIIKAQNK-QFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVT 757

Query:   654 CGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGL 713
              GSKGS INISQM+ACVGQQ+V G+R P GF  R+LPHF +    P ++GFV NS+  GL
Sbjct:   758 AGSKGSFINISQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGL 817

Query:   714 SATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLY 773
             +  EFFFH MGGREGL+DTAVKT++TGY+ RRL+KA+ED+SI+YD +VRN+ G ++QF Y
Sbjct:   818 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAY 877

Query:   774 GDDGMDPANMEGKSGEPLNFDRL----LMKVKATCPPAGQRYLSPQQVSEI 820
             G+DG+D   +E +S + L  D      + + +   P  G  ++ P  +  +
Sbjct:   878 GEDGIDGCFVENQSIDSLRKDNTELERMYRHQVDKPDYGDGWMDPLVIEHV 928

 Score = 266 (98.7 bits), Expect = 1.0e-121, Sum P(4) = 1.0e-121
 Identities = 56/153 (36%), Positives = 89/153 (58%)

Query:  1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
             +G  L  VM    +D  +T SN I E+ Q LGIEA R  ++ E+   +   G  ++ RH+
Sbjct:  1327 DGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHL 1386

Query:  1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
              +LAD+MT+RG ++ ITR GI +++   LM  SFE+T + L +A++    D ++GV+E I
Sbjct:  1387 AILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEILMDAAMFSETDDVKGVTENI 1446

Query:  1231 IMGIPMPLGTGILKI-RQRDAVPPMLKYGAPDP 1262
             I+G   PLGTG  ++   +D +        P+P
Sbjct:  1447 ILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEP 1479

 Score = 241 (89.9 bits), Expect = 1.0e-121, Sum P(4) = 1.0e-121
 Identities = 56/137 (40%), Positives = 83/137 (60%)

Query:   881 ITEKQLEVFIQTCF---SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN 937
             +TEK    F+  C    S++       G  +GA+ AQSIGEP TQMTL TFH+AGV+S N
Sbjct:  1056 LTEK---AFLWVCGEIESKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKN 1112

Query:   938 ITQGVPRIKEIINGAKRISTPIITAELECN--DNENAARVVKGRIEKTLLGQVAKSIKIV 995
             +T GVPR+KEIIN AK++ TP +T  L+ +   + + A++VK ++E T L  V  + +I 
Sbjct:  1113 VTLGVPRLKEIINIAKQVKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIY 1172

Query:   996 MTSRLASIVIALDMETI 1012
                   + +I+ D E +
Sbjct:  1173 YDPDPQNTIISEDAEFV 1189

 Score = 46 (21.3 bits), Expect = 5.4e-78, Sum P(2) = 5.4e-78
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query:  1112 GTGLQAVMGAEGIDGCKTKSNHI 1134
             G  +Q   G +GIDGC  ++  I
Sbjct:   870 GDVIQFAYGEDGIDGCFVENQSI 892

 Score = 42 (19.8 bits), Expect = 1.0e-121, Sum P(4) = 1.0e-121
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query:   773 YGDDGMDPANMEGKSGEPLNFDRL 796
             YGD  MDP  +E    + L  D L
Sbjct:   915 YGDGWMDPLVIEHVRNDSLTRDTL 938

 Score = 41 (19.5 bits), Expect = 1.0e-35, Sum P(4) = 1.0e-35
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query:    29 AVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESL 62
             AVK    GYI   + KA+  + I +D + V  SL
Sbjct:   837 AVKTSETGYIQRRLVKAMEDVSIKYDAT-VRNSL 869

 Score = 37 (18.1 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query:   303 LAVELKSGCIVDRHLEDGDV 322
             L +EL  G + D+ L   D+
Sbjct:  1210 LRIELDRGMVTDKKLTMADI 1229


>POMBASE|SPBC4C3.05c [details] [associations]
            symbol:nuc1 "DNA-directed RNA polymerase I complex large
            subunit Nuc1" species:4896 "Schizosaccharomyces pombe" [GO:0003677
            "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IGI] [GO:0005736 "DNA-directed RNA
            polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
            promoter" evidence=ISO] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0007000 "nucleolus organization" evidence=IMP]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0034503 "protein
            localization to nucleolar rDNA repeats" evidence=IMP]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 PomBase:SPBC4C3.05c
            GO:GO:0005829 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
            GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006406
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0034503 GO:GO:0006360
            GO:GO:0007000 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999
            OMA:CLLNETT PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 EMBL:X14783
            EMBL:M37411 PIR:JS0080 RefSeq:NP_596300.1 ProteinModelPortal:P15398
            STRING:P15398 EnsemblFungi:SPBC4C3.05c.1 GeneID:2540873
            KEGG:spo:SPBC4C3.05c OrthoDB:EOG432464 NextBio:20801989
            Uniprot:P15398
        Length = 1689

 Score = 833 (298.3 bits), Expect = 2.2e-116, Sum P(3) = 2.2e-116
 Identities = 229/717 (31%), Positives = 363/717 (50%)

Query:   313 VDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMNMH 371
             V RH+ +GD+++ NRQP+LH+ S+M H+ARI+P  +T+R + + CN YNADFDGDEMNMH
Sbjct:   593 VYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNMH 652

Query:   372 VPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--L 429
              PQ+  AR+EA  +    +    P +G+ L    QD +     +T KDTFY R  +   L
Sbjct:   653 FPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLL 712

Query:   430 MCCYMGD--GM-DRVDLPTPAILKPVELWTGKQLFS-VLIRPHANMRVYVNLTVKEKTYS 485
                   D  GM  R+    PAI +P   WTGKQ+ S VL+    + R  +NL  K K   
Sbjct:   713 FQALKPDETGMYGRIKTLPPAIQRPGIYWTGKQIISSVLLNLKPSDRPGLNLKSKAKV-P 771

Query:   486 NKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAH 545
              K    + +E           G V F + EL+ G L K++ G  +  GL   +   YG  
Sbjct:   772 GKYWSPDSEE-----------GSVLFDDGELLCGILDKSSFG-ASAFGLVHSVHELYGPD 819

Query:   546 ATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLI----------SENY--- 592
                  ++ L++L   +    GF+  +DD++  ++  + + +L+          +  Y   
Sbjct:   820 IAGRLLSVLSRLFTAYAQMRGFTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGL 879

Query:   593 ------EVCNVKIKE-YNEG-KLQLKPGCDAAQT--LEAVITDILNRIREDAGKACMGSL 642
                    + N  ++E Y +  KLQ   G DAA    +  + + I+N+   D     +   
Sbjct:   880 STDSPIALLNANLEEVYRDDEKLQ---GLDAAMKGKMNGLTSSIINKCIPDG---LLTKF 933

Query:   643 PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
             P+ N    M+  G+KGS +N+SQ+   +GQQ + GRR P     +SLP F        + 
Sbjct:   934 PY-NHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSG 992

Query:   703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
             GF+A+ F +G++  E++FH M GREGL+DTAVKT+ +GY+ R L+K LE L +QYD++VR
Sbjct:   993 GFIASRFLTGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVR 1052

Query:   763 NAGGCIVQFLYGDDGMDPANMEGKSG---EPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
             ++ G IVQF YG+D +D    +  +       N+  L+ K K     +    +  +  S 
Sbjct:  1053 DSDGSIVQFHYGEDSLDVTKQKHLTQFEFSAKNYKSLIQKYKVKSVLSA---VDSETASS 1109

Query:   820 IVEKQLAA-YGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKT 878
               +K L   Y  +   + +  S  ++     +K  + +        D      +E     
Sbjct:  1110 YAKKALKKPYKYDPVLDKYPPS--RYLGSVSEKFQRAVDEYTQKNPDKLIASKKESKLDD 1167

Query:   879 SGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNI 938
             S + E + +  +Q    RY+   V+ G ++G + +QSIGEP TQMTL TFHFAG  + N+
Sbjct:  1168 SLLNESKFKALMQL---RYQQSLVDPGESVGVLASQSIGEPSTQMTLNTFHFAGFGAKNV 1224

Query:   939 TQGVPRIKEIINGAK-RISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKI 994
             T G+PR++EII  A   I TP +T  L    ++  A      + K +L +V + +++
Sbjct:  1225 TLGIPRLREIIMTASANIQTPTMTLRLNDGVSDKRASAFCKEVNKLVLSEVVRQVRV 1281

 Score = 271 (100.5 bits), Expect = 2.2e-116, Sum P(3) = 2.2e-116
 Identities = 77/196 (39%), Positives = 110/196 (56%)

Query:   113 EKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTN---ASLQQE-LVEANS-- 166
             +   + NIAVPP   RP+  M G + +EN   E L RI+Q++   ASL ++  VE N   
Sbjct:   358 DMFFLQNIAVPPTRFRPASKM-GDEVHENIQNELLTRILQSSIQIASLSKDSTVEVNPDE 416

Query:   167 ---------AFKSLAG-WETLQVEVAQYINSDVRGVPFSMQVARPLS-GFVQRLKGKQGR 215
                      AF+ L   +  LQ +V   I+S+ R  P S   +R +  G  Q L+ K+G 
Sbjct:   417 KEGLERRSRAFELLINAFVQLQHDVNSLIDSN-RN-PSSGGQSRTVPPGIKQILEKKEGL 474

Query:   216 FRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNG 275
             FR ++ GKRV Y  R+VISPDPN++  E+ +P   A  LTYPE V+ +N  ++R  + NG
Sbjct:   475 FRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVING 534

Query:   276 PDKYPGARMIRYPDGT 291
             P K+PGA  I+  DGT
Sbjct:   535 PHKWPGASHIQNEDGT 550

 Score = 170 (64.9 bits), Expect = 2.2e-116, Sum P(3) = 2.2e-116
 Identities = 43/140 (30%), Positives = 69/140 (49%)

Query:  1107 RLLVEGTGLQAVMGAEG-IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
             +++ EG  L+A+      I      +N I  + +  G+EAAR  I+ E++     +G+++
Sbjct:  1541 KVITEGVNLKAIWEFYNEISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAV 1600

Query:  1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
             D RH+ L+AD MTF G      R GI+  + S     SFE T   L  A++ G  D +  
Sbjct:  1601 DPRHLSLIADYMTFEGGYKAFNRMGIE-YNTSPFAKMSFETTCHFLTEAALRGDVDDLSN 1659

Query:  1226 VSECIIMGIPMPLGTGILKI 1245
              S  +++G     GTG   I
Sbjct:  1660 PSSRLVVGRVGNFGTGSFDI 1679

 Score = 37 (18.1 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query:    29 AVKCPRCGYINGMVKKAVAVLGIIHDRS 56
             AVK  R GY+   + K +  L + +D +
Sbjct:  1023 AVKTSRSGYLQRCLMKHLEGLCVQYDHT 1050


>UNIPROTKB|B9ZVN9 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0003677
            GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 EMBL:AC009309 PANTHER:PTHR19376:SF11 HGNC:HGNC:17264
            HOGENOM:HOG000205401 ChiTaRS:POLR1A EMBL:AC012511 IPI:IPI00916060
            ProteinModelPortal:B9ZVN9 STRING:B9ZVN9 Ensembl:ENST00000409681
            ArrayExpress:B9ZVN9 Bgee:B9ZVN9 Uniprot:B9ZVN9
        Length = 1659

 Score = 586 (211.3 bits), Expect = 2.9e-114, Sum P(4) = 2.9e-114
 Identities = 146/406 (35%), Positives = 218/406 (53%)

Query:   204 GFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDH 263
             G  Q L+ K+G FR ++ GKRV+Y  R+VI PD  +   E+ IP+  A  LTYP+ V+  
Sbjct:   416 GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPW 475

Query:   264 NIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYG---KFRNQLAVEL---KSGC------ 311
             N+++LRQ + NGP+ +PGA M+   DG+   L       R  +A +L    +G       
Sbjct:   476 NVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQGT 535

Query:   312 -IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMN 369
              IV RH+++GD++L NRQP+LHR SI  HRARI+P  + LR + + C  YNADFDGDEMN
Sbjct:   536 KIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMN 595

Query:   370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
              H PQ+E  R EA +L         PK+G+ L    QD + S   +T +  F+ R  + +
Sbjct:   596 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHY-M 654

Query:   430 MCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS-VLIRPHANMRVYVNLTVKEKTYSN 486
                Y G  D + RV L +P+ILKP  LWTGKQ+ S +LI       + +NL+ K K    
Sbjct:   655 ELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGK 714

Query:   487 KLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHA 546
               ++               +  V  R  EL+ G L KA  G+ +  GL       YG   
Sbjct:   715 AWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGS-SAYGLVHCCYEIYGGET 773

Query:   547 TSGCMNRLAKLSARWIGNH-GFSIGIDDVQPKKELSDKKGKLISEN 591
             +   +  LA+L   ++  + GF++G++D+  K +   K+ ++I E+
Sbjct:   774 SGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEES 819

 Score = 338 (124.0 bits), Expect = 2.9e-114, Sum P(4) = 2.9e-114
 Identities = 75/158 (47%), Positives = 97/158 (61%)

Query:   627 LNRIREDAGKACM--G---SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
             +N    +  KACM  G     P  NS  +M Q G+KGS +N  Q+   +GQ  + GRR P
Sbjct:   869 VNHYSNEINKACMPFGLHRQFP-ENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPP 927

Query:   682 NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
                  +SLP F      P A GFV   F +G+   EFFFH M GREGLVDTAVKT+ +GY
Sbjct:   928 LMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGY 987

Query:   742 MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
             + R +IK LE L +QYD +VR++ G +VQFLYG+DG+D
Sbjct:   988 LQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1025

 Score = 208 (78.3 bits), Expect = 2.9e-114, Sum P(4) = 2.9e-114
 Identities = 59/183 (32%), Positives = 98/183 (53%)

Query:   819 EIVEKQLAAYGKES--CSEAFLNSLRK--FFEGQQDKLDKKIKFVEDIGWDDKSQILEEV 874
             E+ E+    Y K++  C +  L+  R   +F    +  + K   V+D   +  +Q   E 
Sbjct:  1126 ELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETK---VDDYSQEWAAQT--EK 1180

Query:   875 THKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 934
             +++ S ++  +L   +Q  + R      E G A+G + AQSIGEP TQMTL TFHFAG  
Sbjct:  1181 SYEKSELSLDRLRTLLQLKWQR---SLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRG 1237

Query:   935 SMNITQGVPRIKEIINGAK-RISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKS 991
              MN+T G+PR++EI+  A   I TP+++  +  N  +   RV  +K ++ +  LG+V + 
Sbjct:  1238 EMNVTLGIPRLREILMVASANIKTPMMSVPV-LNTKKALKRVKSLKKQLTRVCLGEVLQK 1296

Query:   992 IKI 994
             I +
Sbjct:  1297 IDV 1299

 Score = 193 (73.0 bits), Expect = 2.9e-114, Sum P(4) = 2.9e-114
 Identities = 48/141 (34%), Positives = 75/141 (53%)

Query:  1108 LLVEGTGLQAVMG-AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  EG  L  +   AE +D  +  SN I  +  T GIEAA   I  EI +    +G+++D
Sbjct:  1517 LNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVD 1576

Query:  1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
              RH+ L+AD M F G    + RFGI+  + S L   +FE +   L  A++ G  D +   
Sbjct:  1577 PRHLSLVADYMCFEGVYKPLNRFGIRS-NSSPLQQMTFETSFQFLKQATMLGSHDELRSP 1635

Query:  1227 SECIIMGIPMPLGTGILKIRQ 1247
             S C+++G  +  GTG+ +++Q
Sbjct:  1636 SACLVVGKVVRGGTGLFELKQ 1656

 Score = 51 (23.0 bits), Expect = 7.7e-57, Sum P(4) = 7.7e-57
 Identities = 39/173 (22%), Positives = 66/173 (38%)

Query:   230 RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-RYP 288
             R+ +S  P   + +    I + R+ ++   V D  ++KL        DKYPG R I    
Sbjct:   372 RSFLSTLPGQSLIDKLYNIWI-RLQSHVNIVFDSEMDKLMM------DKYPGIRQILEKK 424

Query:   289 DGTARV-LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
             +G  R  + GK R   A   +S    D ++   ++ +    P +    +  +   + PW 
Sbjct:   425 EGLFRKHMMGK-RVDYAA--RSVICPDMYINTNEIGI----PMVFATKLT-YPQPVTPWN 476

Query:   348 TLRFNESVCNPYNADFDGDEM--NMHVPQTEEARTEALLLMGVQNNLCTPKNG 398
                  ++V N  N    G  M  N    +T  +  +      V   L TP  G
Sbjct:   477 VQELRQAVINGPNVH-PGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATG 528

 Score = 47 (21.6 bits), Expect = 2.0e-56, Sum P(4) = 2.0e-56
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query:   216 FRGNLSGKRVEY--TGRTVISPDPNLKITEVAIPIRMAR 252
             ++ +++ KR  +  TGR+V+  + N K+T +  P  + R
Sbjct:   196 WKAHMNAKRCPHCKTGRSVVRKEHNSKLT-ITFPAMVHR 233

 Score = 40 (19.1 bits), Expect = 2.8e-25, Sum P(3) = 2.8e-25
 Identities = 35/179 (19%), Positives = 74/179 (41%)

Query:   525 TLGNGNKDGLYSVLLRDYGA-HATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK 583
             +LGN + +GLY + L    +    S C+   +  S   +G+    + +    P   L DK
Sbjct:    41 SLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGH-LGH--IELPLTVYNPL--LFDK 95

Query:   584 -----KGKLISENYEVCNVKIKEYNEGKLQ-LKPGC-DAAQTLEAVITDILNRIREDAGK 636
                  +G  ++ +   C   +      +L+ L+ G   A   LE ++   L    + +  
Sbjct:    96 LYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSAS 155

Query:   637 ACMGSLPWRNSPLIMSQC-GSKGSPI-NI----SQMVACVGQQSVGGRRAPNGFIDRSL 689
                  L    + ++ +   GS+G+ + N+    S+++A   +  +  +R P+    RS+
Sbjct:   156 EIREELEQYTTEIVQNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSV 214

 Score = 39 (18.8 bits), Expect = 3.6e-25, Sum P(3) = 3.6e-25
 Identities = 12/55 (21%), Positives = 23/55 (41%)

Query:   750 LEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATC 804
             L DL++   +S      C+  F      +    +      PL FD+L + ++ +C
Sbjct:    50 LYDLALGPADSKEVCSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSC 104

 Score = 39 (18.8 bits), Expect = 6.4e-07, Sum P(4) = 6.4e-07
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query:   224 RVEYTGRTVISPDPNLKITEVAIPIRMARIL-TYPERVSDHNIE 266
             R +Y  +    PDP+L +      I  A +  T+  +V D++ E
Sbjct:  1132 RRKYQKKAAACPDPSLSVWRP--DIYFASVSETFETKVDDYSQE 1173

 Score = 38 (18.4 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query:   297 GKFRN-QLAVELKSGCIVDRHLEDGD 321
             G+ R  Q   E + G IVD   E+GD
Sbjct:  1384 GRSRGEQEGDEEEEGHIVDAEAEEGD 1409

 Score = 37 (18.1 bits), Expect = 9.4e-83, Sum P(4) = 9.4e-83
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query:   567 FSIGIDDVQ-PKKE-LSDKKGKLISENYEV 594
             F  G D +  PK + L  K+   ++ NYEV
Sbjct:  1017 FLYGEDGLDIPKTQFLQPKQFPFLASNYEV 1046

 Score = 37 (18.1 bits), Expect = 8.8e-24, Sum P(4) = 8.8e-24
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query:    25 MASKAVKCPRCGYINGMVKKAVAVLGIIHD 54
             +   AVK  R GY+   + K +  L + +D
Sbjct:   975 LVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004

 Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
 Identities = 19/76 (25%), Positives = 28/76 (36%)

Query:   338 CHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA---------RTEALLLMGV 388
             C    +  WR   +  SV   +    D D       QTE++         R   LL +  
Sbjct:  1142 CPDPSLSVWRPDIYFASVSETFETKVD-DYSQEWAAQTEKSYEKSELSLDRLRTLLQLKW 1200

Query:   389 QNNLCTPKNGEILVAS 404
             Q +LC P     L+A+
Sbjct:  1201 QRSLCEPGEAVGLLAA 1216


>CGD|CAL0001661 [details] [associations]
            symbol:RPA190 species:5476 "Candida albicans" [GO:0005829
            "cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
            complex" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
            evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
            [GO:0042790 "transcription of nuclear large rRNA transcript from
            RNA polymerase I promoter" evidence=IEA] [GO:0034503 "protein
            localization to nucleolar rDNA repeats" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 CGD:CAL0001661
            GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AACQ01000244
            EMBL:AACQ01000240 GO:GO:0003899 eggNOG:COG0086 KO:K02999
            PANTHER:PTHR19376:SF11 RefSeq:XP_710723.1 RefSeq:XP_710761.1
            ProteinModelPortal:Q59LW3 STRING:Q59LW3 GeneID:3647643
            GeneID:3647677 KEGG:cal:CaO19.1839 KEGG:cal:CaO19.9397
            Uniprot:Q59LW3
        Length = 1665

 Score = 577 (208.2 bits), Expect = 3.6e-114, Sum P(3) = 3.6e-114
 Identities = 160/513 (31%), Positives = 257/513 (50%)

Query:   119 NIAVPPIAIR-PSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS-LAGWE- 175
             ++ VPP   R PS +  G + +EN   E L  II+T+  ++       + +K  ++G + 
Sbjct:   343 SVLVPPTRFRLPSKL--GDEIHENAQNELLSNIIKTSVLIRDLNERITNMYKEKISGEDK 400

Query:   176 ------------TLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGK 223
                         TLQ +V  +I+S       + ++  P  G  Q L+ K+G FR ++ GK
Sbjct:   401 KIIFNRLMNAFVTLQNDVNAFIDSTKNQNAPAGKIPNP--GIKQALEKKEGLFRKHMMGK 458

Query:   224 RVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR 283
             RV Y  R+VISPDPNL+  E+ +P   A+ LTYPE V+ +N  +LRQ + NGPD +PGA 
Sbjct:   459 RVNYAARSVISPDPNLETNEIGVPPVFAKKLTYPEPVTSYNASELRQAVINGPDTWPGAI 518

Query:   284 MIRYPDGTARVLYGK-------FRNQLAVELKSGCIVD----RHLEDGDVVLFNRQPSLH 332
              ++  DG+   L G          NQL        +V     RH+++ DVV+ NRQP+LH
Sbjct:   519 QVQNEDGSLISLIGMTLEQRKAIANQLLTPNGGNSVVGKKVYRHIKNNDVVIMNRQPTLH 578

Query:   333 RMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNN 391
             + S+M H+ R++P  +TLR + +    YNADFDGDEMNMH PQ E AR EAL L    N 
Sbjct:   579 KASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDNQ 638

Query:   392 LCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLM---CCYMGDGMDRVDLPTPAI 448
               TP +G  L    QD +++   +T KDTF++R  +  +   C    DG    +     +
Sbjct:   639 YLTPTSGSPLRGLIQDHISAGVWLTNKDTFFNRETYQQLIYGCIRPEDGHTSKNR---IV 695

Query:   449 LKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGF 508
               P  ++  + L++          V +N+        N + + +   +   E+   N+  
Sbjct:   696 TVPPAIYKPEMLWT---GKQVITTVLLNIKPDNVPGVNLISKNKIKSDYWSESSTENE-- 750

Query:   509 VYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFS 568
             V F+N EL+SG L K+  G  ++ G+   L   YG       ++ L +L   +I    F+
Sbjct:   751 VIFKNGELLSGILDKSQYG-ASQFGIVHSLHEVYGPTVAGKALSVLGRLFTNYIMMTAFT 809

Query:   569 IGIDDVQPKKELSDKKGKLISENYEVCNVKIKE 601
              G+DD++   E +  +  ++ ++ ++  V   E
Sbjct:   810 CGMDDLRLTDEGNTWRKDILKQSVDIGRVAATE 842

 Score = 511 (184.9 bits), Expect = 3.6e-114, Sum P(3) = 3.6e-114
 Identities = 134/397 (33%), Positives = 206/397 (51%)

Query:   619 LEAVITDILNRIREDAGKACM--GSL---PWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
             L+A+    +N I       C+  G++   P+ NS   M+  G+KGS +N+SQ++  +GQQ
Sbjct:   874 LDALTQSKVNAITSQVVSKCVPDGTMKRFPY-NSMQAMALSGAKGSNVNVSQIMCLLGQQ 932

Query:   674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
             ++ GRR P     ++LP F     +  A G++   FYSG+   E++FH M GREGL+DTA
Sbjct:   933 ALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKQRFYSGIRPQEYYFHCMAGREGLIDTA 992

Query:   734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL-- 791
             VKT+ +GY+ R L K LE + + YDNSVR+A G ++QFLYG D +D       +      
Sbjct:   993 VKTSRSGYLQRCLTKQLEGVHVSYDNSVRDADGTLIQFLYGGDAVDTTKQSHMNQFKFCV 1052

Query:   792 -NFDRLLMKVKA---TCPPAGQRYLS-PQQVSEIVEKQ--LAAYGKESCSEAFLNSLR-- 842
              N+D LL K      T        LS  ++V + ++KQ  +  Y +    +  LN     
Sbjct:  1053 DNYDALLTKYNPGDMTENIDTDLALSYSKKVRKSLKKQKDVPHYDQVIKYDPVLNVYNPA 1112

Query:   843 KFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRV 902
             K+     +K  +K+           +Q  EE    T  ITEK+    +Q    +Y    +
Sbjct:  1113 KYLGSVSEKFQEKLDTYVSKNPTIFAQSKEEAK-STGKITEKKFRALMQL---KYMRSLI 1168

Query:   903 EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR-ISTPIIT 961
               G A+G I +QSIGEP TQMTL TFHFAG  + N+T G+PR++EII  A   I TP +T
Sbjct:  1169 NPGEAVGIIASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASASIKTPQMT 1228

Query:   962 AELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
               +  + N+  A      + + ++ +    + +  T+
Sbjct:  1229 LPILADVNDEQADAFCKSVARVVMSEFVDKVVVTETT 1265

 Score = 188 (71.2 bits), Expect = 3.6e-114, Sum P(3) = 3.6e-114
 Identities = 47/135 (34%), Positives = 70/135 (51%)

Query:  1108 LLVEGTGLQAVMGAEG-IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  EG   +A+   +  I+     SN ++ V +T G+EAAR  I++EI      +G+S+ 
Sbjct:  1521 LTTEGVNFRAMWDQDDFINVNGITSNDVYAVLKTYGVEAARNTIVNEIYRVFDTYGISVS 1580

Query:  1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
              RH+ L+AD+MT  G  L   R GI     S  M  S+E T   L  A ++G  + +E  
Sbjct:  1581 SRHLDLIADMMTREGTYLAFNRQGIDS-STSAFMKMSYETTCQFLTKAVLDGDREELESP 1639

Query:  1227 SECIIMGIPMPLGTG 1241
             S  I+MG    +GTG
Sbjct:  1640 SAKIVMGKLSNVGTG 1654

 Score = 43 (20.2 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
 Identities = 27/105 (25%), Positives = 46/105 (43%)

Query:    29 AVKCPRCGYINGMVKKAVAVLGIIHDRS--KVTESLQEF---ASAITHTKES-----KAA 78
             AVK  R GY+   + K +  + + +D S      +L +F     A+  TK+S     K  
Sbjct:   992 AVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDADGTLIQFLYGGDAVDTTKQSHMNQFKFC 1051

Query:    79 VNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVP 123
             V+    +L   N   + + + DTD  + Y S++  K +     VP
Sbjct:  1052 VDNYDALLTKYNPGDMTENI-DTDLALSY-SKKVRKSLKKQKDVP 1094

 Score = 42 (19.8 bits), Expect = 1.2e-57, Sum P(3) = 1.2e-57
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query:   299 FRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
             F NQL + L+S C+     +   + + N +  LH
Sbjct:    90 FFNQLYIFLRSACLYCHKFKLNQLEVHNFECKLH 123

 Score = 39 (18.8 bits), Expect = 3.8e-50, Sum P(2) = 3.8e-50
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query:  1111 EGTGLQAVMGAEGIDGCKTKSNHI 1134
             +GT +Q + G + +D   TK +H+
Sbjct:  1024 DGTLIQFLYGGDAVD--TTKQSHM 1045

 Score = 39 (18.8 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query:   956 STPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRL 1000
             S+ +I  + E ND+E     V  + +K L+ +    +K  + S L
Sbjct:   146 SSSVIDVDGEDNDDEEGGGSVDEKSKKDLMKRRELFVKNAIESAL 190


>UNIPROTKB|O95602 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase I subunit RPA1"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005736
            "DNA-directed RNA polymerase I complex" evidence=NAS] [GO:0005654
            "nucleoplasm" evidence=TAS] [GO:0006360 "transcription from RNA
            polymerase I promoter" evidence=TAS] [GO:0006361 "transcription
            initiation from RNA polymerase I promoter" evidence=TAS]
            [GO:0006362 "transcription elongation from RNA polymerase I
            promoter" evidence=TAS] [GO:0006363 "termination of RNA polymerase
            I transcription" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            Reactome:REACT_71 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CH471053
            GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0009303
            Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
            GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999 OMA:CLLNETT
            PANTHER:PTHR19376:SF11 EMBL:U33460 EMBL:AH007280 EMBL:AK302458
            EMBL:BC117173 EMBL:BC126303 EMBL:AL117467 IPI:IPI00031960
            PIR:T17252 RefSeq:NP_056240.2 UniGene:Hs.531818
            ProteinModelPortal:O95602 SMR:O95602 DIP:DIP-27537N IntAct:O95602
            MINT:MINT-111492 STRING:O95602 PhosphoSite:O95602
            SWISS-2DPAGE:O95602 PaxDb:O95602 PRIDE:O95602
            Ensembl:ENST00000263857 GeneID:25885 KEGG:hsa:25885 UCSC:uc002sqs.3
            CTD:25885 GeneCards:GC02M086253 H-InvDB:HIX0002233 HGNC:HGNC:17264
            HPA:CAB010145 neXtProt:NX_O95602 PharmGKB:PA134891380
            HOGENOM:HOG000205401 HOVERGEN:HBG017741 InParanoid:O95602
            OrthoDB:EOG41VK23 ChiTaRS:POLR1A GenomeRNAi:25885 NextBio:47304
            PMAP-CutDB:O95602 ArrayExpress:O95602 Bgee:O95602 CleanEx:HS_POLR1A
            Genevestigator:O95602 GermOnline:ENSG00000068654 Uniprot:O95602
        Length = 1720

 Score = 586 (211.3 bits), Expect = 3.8e-114, Sum P(4) = 3.8e-114
 Identities = 146/406 (35%), Positives = 218/406 (53%)

Query:   204 GFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDH 263
             G  Q L+ K+G FR ++ GKRV+Y  R+VI PD  +   E+ IP+  A  LTYP+ V+  
Sbjct:   416 GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPW 475

Query:   264 NIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYG---KFRNQLAVEL---KSGC------ 311
             N+++LRQ + NGP+ +PGA M+   DG+   L       R  +A +L    +G       
Sbjct:   476 NVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQGT 535

Query:   312 -IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMN 369
              IV RH+++GD++L NRQP+LHR SI  HRARI+P  + LR + + C  YNADFDGDEMN
Sbjct:   536 KIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMN 595

Query:   370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
              H PQ+E  R EA +L         PK+G+ L    QD + S   +T +  F+ R  + +
Sbjct:   596 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHY-M 654

Query:   430 MCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS-VLIRPHANMRVYVNLTVKEKTYSN 486
                Y G  D + RV L +P+ILKP  LWTGKQ+ S +LI       + +NL+ K K    
Sbjct:   655 ELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGK 714

Query:   487 KLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHA 546
               ++               +  V  R  EL+ G L KA  G+ +  GL       YG   
Sbjct:   715 AWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGS-SAYGLVHCCYEIYGGET 773

Query:   547 TSGCMNRLAKLSARWIGNH-GFSIGIDDVQPKKELSDKKGKLISEN 591
             +   +  LA+L   ++  + GF++G++D+  K +   K+ ++I E+
Sbjct:   774 SGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEES 819

 Score = 338 (124.0 bits), Expect = 3.8e-114, Sum P(4) = 3.8e-114
 Identities = 75/158 (47%), Positives = 97/158 (61%)

Query:   627 LNRIREDAGKACM--G---SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
             +N    +  KACM  G     P  NS  +M Q G+KGS +N  Q+   +GQ  + GRR P
Sbjct:   869 VNHYSNEINKACMPFGLHRQFP-ENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPP 927

Query:   682 NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
                  +SLP F      P A GFV   F +G+   EFFFH M GREGLVDTAVKT+ +GY
Sbjct:   928 LMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGY 987

Query:   742 MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
             + R +IK LE L +QYD +VR++ G +VQFLYG+DG+D
Sbjct:   988 LQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1025

 Score = 208 (78.3 bits), Expect = 3.8e-114, Sum P(4) = 3.8e-114
 Identities = 59/183 (32%), Positives = 98/183 (53%)

Query:   819 EIVEKQLAAYGKES--CSEAFLNSLRK--FFEGQQDKLDKKIKFVEDIGWDDKSQILEEV 874
             E+ E+    Y K++  C +  L+  R   +F    +  + K   V+D   +  +Q   E 
Sbjct:  1126 ELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETK---VDDYSQEWAAQT--EK 1180

Query:   875 THKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 934
             +++ S ++  +L   +Q  + R      E G A+G + AQSIGEP TQMTL TFHFAG  
Sbjct:  1181 SYEKSELSLDRLRTLLQLKWQR---SLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRG 1237

Query:   935 SMNITQGVPRIKEIINGAK-RISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKS 991
              MN+T G+PR++EI+  A   I TP+++  +  N  +   RV  +K ++ +  LG+V + 
Sbjct:  1238 EMNVTLGIPRLREILMVASANIKTPMMSVPV-LNTKKALKRVKSLKKQLTRVCLGEVLQK 1296

Query:   992 IKI 994
             I +
Sbjct:  1297 IDV 1299

 Score = 193 (73.0 bits), Expect = 3.8e-114, Sum P(4) = 3.8e-114
 Identities = 48/141 (34%), Positives = 75/141 (53%)

Query:  1108 LLVEGTGLQAVMG-AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  EG  L  +   AE +D  +  SN I  +  T GIEAA   I  EI +    +G+++D
Sbjct:  1578 LNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVD 1637

Query:  1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
              RH+ L+AD M F G    + RFGI+  + S L   +FE +   L  A++ G  D +   
Sbjct:  1638 PRHLSLVADYMCFEGVYKPLNRFGIRS-NSSPLQQMTFETSFQFLKQATMLGSHDELRSP 1696

Query:  1227 SECIIMGIPMPLGTGILKIRQ 1247
             S C+++G  +  GTG+ +++Q
Sbjct:  1697 SACLVVGKVVRGGTGLFELKQ 1717

 Score = 51 (23.0 bits), Expect = 9.3e-57, Sum P(4) = 9.3e-57
 Identities = 39/173 (22%), Positives = 66/173 (38%)

Query:   230 RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-RYP 288
             R+ +S  P   + +    I + R+ ++   V D  ++KL        DKYPG R I    
Sbjct:   372 RSFLSTLPGQSLIDKLYNIWI-RLQSHVNIVFDSEMDKLMM------DKYPGIRQILEKK 424

Query:   289 DGTARV-LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
             +G  R  + GK R   A   +S    D ++   ++ +    P +    +  +   + PW 
Sbjct:   425 EGLFRKHMMGK-RVDYAA--RSVICPDMYINTNEIGI----PMVFATKLT-YPQPVTPWN 476

Query:   348 TLRFNESVCNPYNADFDGDEM--NMHVPQTEEARTEALLLMGVQNNLCTPKNG 398
                  ++V N  N    G  M  N    +T  +  +      V   L TP  G
Sbjct:   477 VQELRQAVINGPNVH-PGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATG 528

 Score = 47 (21.6 bits), Expect = 2.4e-56, Sum P(4) = 2.4e-56
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query:   216 FRGNLSGKRVEY--TGRTVISPDPNLKITEVAIPIRMAR 252
             ++ +++ KR  +  TGR+V+  + N K+T +  P  + R
Sbjct:   196 WKAHMNAKRCPHCKTGRSVVRKEHNSKLT-ITFPAMVHR 233

 Score = 40 (19.1 bits), Expect = 3.2e-25, Sum P(3) = 3.2e-25
 Identities = 35/179 (19%), Positives = 74/179 (41%)

Query:   525 TLGNGNKDGLYSVLLRDYGA-HATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK 583
             +LGN + +GLY + L    +    S C+   +  S   +G+    + +    P   L DK
Sbjct:    41 SLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGH-LGH--IELPLTVYNPL--LFDK 95

Query:   584 -----KGKLISENYEVCNVKIKEYNEGKLQ-LKPGC-DAAQTLEAVITDILNRIREDAGK 636
                  +G  ++ +   C   +      +L+ L+ G   A   LE ++   L    + +  
Sbjct:    96 LYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSAS 155

Query:   637 ACMGSLPWRNSPLIMSQC-GSKGSPI-NI----SQMVACVGQQSVGGRRAPNGFIDRSL 689
                  L    + ++ +   GS+G+ + N+    S+++A   +  +  +R P+    RS+
Sbjct:   156 EIREELEQYTTEIVQNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSV 214

 Score = 39 (18.8 bits), Expect = 4.1e-25, Sum P(3) = 4.1e-25
 Identities = 12/55 (21%), Positives = 23/55 (41%)

Query:   750 LEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATC 804
             L DL++   +S      C+  F      +    +      PL FD+L + ++ +C
Sbjct:    50 LYDLALGPADSKEVCSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSC 104

 Score = 39 (18.8 bits), Expect = 7.5e-07, Sum P(4) = 7.5e-07
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query:   224 RVEYTGRTVISPDPNLKITEVAIPIRMARIL-TYPERVSDHNIE 266
             R +Y  +    PDP+L +      I  A +  T+  +V D++ E
Sbjct:  1132 RRKYQKKAAACPDPSLSVWRP--DIYFASVSETFETKVDDYSQE 1173

 Score = 38 (18.4 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query:   297 GKFRN-QLAVELKSGCIVDRHLEDGD 321
             G+ R  Q   E + G IVD   E+GD
Sbjct:  1384 GRSRGEQEGDEEEEGHIVDAEAEEGD 1409

 Score = 37 (18.1 bits), Expect = 1.2e-82, Sum P(4) = 1.2e-82
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query:   567 FSIGIDDVQ-PKKE-LSDKKGKLISENYEV 594
             F  G D +  PK + L  K+   ++ NYEV
Sbjct:  1017 FLYGEDGLDIPKTQFLQPKQFPFLASNYEV 1046

 Score = 37 (18.1 bits), Expect = 1.0e-23, Sum P(4) = 1.0e-23
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query:    25 MASKAVKCPRCGYINGMVKKAVAVLGIIHD 54
             +   AVK  R GY+   + K +  L + +D
Sbjct:   975 LVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004

 Score = 37 (18.1 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
 Identities = 19/76 (25%), Positives = 28/76 (36%)

Query:   338 CHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA---------RTEALLLMGV 388
             C    +  WR   +  SV   +    D D       QTE++         R   LL +  
Sbjct:  1142 CPDPSLSVWRPDIYFASVSETFETKVD-DYSQEWAAQTEKSYEKSELSLDRLRTLLQLKW 1200

Query:   389 QNNLCTPKNGEILVAS 404
             Q +LC P     L+A+
Sbjct:  1201 QRSLCEPGEAVGLLAA 1216


>UNIPROTKB|F1SVC3 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase" species:9823
            "Sus scrofa" [GO:0005736 "DNA-directed RNA polymerase I complex"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
            OMA:CLLNETT PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
            EMBL:CU570839 Ensembl:ENSSSCT00000009008 Uniprot:F1SVC3
        Length = 1723

 Score = 579 (208.9 bits), Expect = 4.4e-114, Sum P(4) = 4.4e-114
 Identities = 149/409 (36%), Positives = 219/409 (53%)

Query:   204 GFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDH 263
             G  Q L+ K G FR ++ GKRV+Y  R+VI PD  +   E+ IP+  A  LTYP+ V+  
Sbjct:   420 GIRQILEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPW 479

Query:   264 NIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF---RNQLAVEL---KSGC------ 311
             N+++LRQ + NGP  +PGA M+   DG+   L       R  +A +L    +G       
Sbjct:   480 NVQELRQAVINGPTVHPGASMVINEDGSRTALSASDLTQREAVAKQLLTPATGAPKPQGT 539

Query:   312 -IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMN 369
              IV RH+++GD++L NRQP+LHR SI  HRARI+P  + LR + + C  YNADFDGDEMN
Sbjct:   540 KIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMN 599

Query:   370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
              H PQ+E  R EA +L         PK+G+ L    QD + S   +T +  F+ R  + +
Sbjct:   600 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQY-M 658

Query:   430 MCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS-VLIRPHANMRVYVNLTVKEKTYSN 486
                Y G  D + RV L  PAILKP  LWTGKQ+ S +LI      ++ +NL  K K    
Sbjct:   659 ELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDQIPLNLLGKAKIGGK 718

Query:   487 KLIRTEGDEEIRIETMCPN---DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYG 543
               ++ E    +      PN   +  V  R+ EL+ G L KA  G+ +  GL       YG
Sbjct:   719 AWVK-EAPRPV--PGFNPNLMCESQVVIRDGELLCGVLDKAHYGS-SAYGLVHCCYEIYG 774

Query:   544 AHATSGCMNRLAKLSARWIGNH-GFSIGIDDVQPKKELSDKKGKLISEN 591
                +   +  LA+L   ++  + GF++G++D+  K     ++ ++I E+
Sbjct:   775 GETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPRADVRRHRIIEES 823

 Score = 332 (121.9 bits), Expect = 4.4e-114, Sum P(4) = 4.4e-114
 Identities = 74/158 (46%), Positives = 97/158 (61%)

Query:   627 LNRIREDAGKACM--G---SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
             +N    +  KACM  G     P  N+  +M Q G+KGS +N  Q+   +GQ  + GRR P
Sbjct:   873 VNHHSNEINKACMPLGLHRQFP-ENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPP 931

Query:   682 NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
                  +SLP F      P A GFV   F +G+   EFFFH M GREGLVDTAVKT+ +GY
Sbjct:   932 LMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGY 991

Query:   742 MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
             + R +IK LE L +QYD +VR++ G +VQFLYG+DG+D
Sbjct:   992 LQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1029

 Score = 222 (83.2 bits), Expect = 4.4e-114, Sum P(4) = 4.4e-114
 Identities = 71/224 (31%), Positives = 117/224 (52%)

Query:   786 KSGEPLNFDRLLMK-VKA-TCPPAGQRYLSPQ--QV----SEIVEKQLAAYGKES--CSE 835
             + G  LN+ + +   VKA     A Q   SP+  QV    SE+ E+    Y K++  C +
Sbjct:  1089 REGAFLNYSQKIQAAVKALNLEGANQNGRSPETHQVLRMWSELDEQSRRKYQKKAAPCPD 1148

Query:   836 AFLNSLRK--FFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTC 893
               L+  R   +F    +  +KK+   +D   +  +Q   E +H+ S ++ ++L   +Q  
Sbjct:  1149 PSLSVWRPDIYFASVSETFEKKM---DDYSLEWAAQA--EKSHEKSELSLERLRTLLQLK 1203

Query:   894 FSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
             + R      + G A+G + AQSIGEP TQMTL TFHFAG   MN+T G+PR++EI+  A 
Sbjct:  1204 WQR---SLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVAS 1260

Query:   954 -RISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKI 994
               I TP+++  +  N      +V  +K ++ +  LG+V + I +
Sbjct:  1261 ANIKTPMMSVPV-FNTRRALKKVKSLKKQLTRVCLGEVLEKIDV 1303

 Score = 192 (72.6 bits), Expect = 4.4e-114, Sum P(4) = 4.4e-114
 Identities = 48/141 (34%), Positives = 75/141 (53%)

Query:  1108 LLVEGTGLQAVMG-AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  EG  L  +   AE +D  +  SN I  +  T GIEAA   I  EI +    +G+++D
Sbjct:  1581 LNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVD 1640

Query:  1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
              RH+ L+AD M F G    + RFGI+  + S L   +FE +   L  A++ G  D +   
Sbjct:  1641 PRHLSLVADYMCFEGVYKPLNRFGIRS-NSSPLQQMTFETSFQFLKQATMMGSHDELRSP 1699

Query:  1227 SECIIMGIPMPLGTGILKIRQ 1247
             S C+++G  +  GTG+ +++Q
Sbjct:  1700 SACLVVGKVVRGGTGLFELKQ 1720

 Score = 49 (22.3 bits), Expect = 3.0e-57, Sum P(4) = 3.0e-57
 Identities = 39/173 (22%), Positives = 68/173 (39%)

Query:   230 RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-RYP 288
             R+ +S  P   +T+    I + R+ ++   V D  ++KL        +KYPG R I    
Sbjct:   376 RSFLSLLPGQSLTDRLYNIWI-RLQSHVNIVFDSEMDKLTM------EKYPGIRQILEKK 428

Query:   289 DGTARV-LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
             DG  R  + GK R   A   +S    D ++   ++ +    P +    +  +   + PW 
Sbjct:   429 DGLFRKHMMGK-RVDYAA--RSVICPDMYINTNEIGI----PMVFATKLT-YPQPVTPWN 480

Query:   348 TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM--GVQNNLCTPKNG 398
                  ++V N       G  M ++   +  A + + L     V   L TP  G
Sbjct:   481 VQELRQAVINGPTVH-PGASMVINEDGSRTALSASDLTQREAVAKQLLTPATG 532

 Score = 46 (21.3 bits), Expect = 6.2e-57, Sum P(4) = 6.2e-57
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query:   216 FRGNLSGKRVEY--TGRTVISPDPNLKITEVAIPIRMAR 252
             ++ +++ KR  +  TGR+V+  + N K+T +  P  + R
Sbjct:   196 WKAHMTAKRCPHCRTGRSVVRKEHNSKLT-ITYPAMVHR 233

 Score = 42 (19.8 bits), Expect = 1.6e-26, Sum P(4) = 1.6e-26
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query:   735 KTADTGYMSRRLIKALEDLSIQ 756
             K  DTG+    L   LED+ ++
Sbjct:   272 KNEDTGFFLNYLFLGLEDVGLE 293

 Score = 41 (19.5 bits), Expect = 1.3e-83, Sum P(4) = 1.3e-83
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query:   567 FSIGIDDVQ-PKKE-LSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
             F  G D +  PK + L  K+   ++ NYEV  +K K   E   + +P
Sbjct:  1021 FLYGEDGLDIPKTQFLQPKQFPFLASNYEVI-MKSKHLREVLSKAEP 1066

 Score = 40 (19.1 bits), Expect = 3.2e-55, Sum P(5) = 3.2e-55
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query:   538 LLRDYGAHATSGCMNRLAKLSARW 561
             LL  +G+H  + C +R   +++ W
Sbjct:   173 LLGSHGSHVKNVCESRSKLIASFW 196

 Score = 38 (18.4 bits), Expect = 3.4e-25, Sum P(4) = 3.4e-25
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query:   790 PLNFDRLLMKVKATC 804
             PL FD+L + ++ +C
Sbjct:    90 PLLFDKLYLLLRGSC 104

 Score = 37 (18.1 bits), Expect = 3.2e-55, Sum P(5) = 3.2e-55
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query:   525 TLGNGNKDGLYSVLL 539
             +LGN + +GLY + L
Sbjct:    41 SLGNPSANGLYDLAL 55

 Score = 37 (18.1 bits), Expect = 1.7e-25, Sum P(4) = 1.7e-25
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query:    25 MASKAVKCPRCGYINGMVKKAVAVLGIIHD 54
             +   AVK  R GY+   + K +  L + +D
Sbjct:   979 LVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1008


>RGD|620824 [details] [associations]
            symbol:Polr1a "polymerase (RNA) I polypeptide A" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005736
            "DNA-directed RNA polymerase I complex" evidence=ISO;IDA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009303 "rRNA
            transcription" evidence=IDA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:620824
            GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899
            eggNOG:COG0086 KO:K02999 PANTHER:PTHR19376:SF11 CTD:25885
            HOGENOM:HOG000205401 HOVERGEN:HBG017741 OrthoDB:EOG41VK23
            EMBL:AF025425 IPI:IPI00199160 PIR:T14103 RefSeq:NP_113960.1
            UniGene:Rn.24877 ProteinModelPortal:O54889 STRING:O54889
            PhosphoSite:O54889 PRIDE:O54889 GeneID:83581 KEGG:rno:83581
            UCSC:RGD:620824 InParanoid:O54889 NextBio:616111
            ArrayExpress:O54889 Genevestigator:O54889 Uniprot:O54889
        Length = 1716

 Score = 578 (208.5 bits), Expect = 7.3e-114, Sum P(5) = 7.3e-114
 Identities = 154/436 (35%), Positives = 227/436 (52%)

Query:   174 WETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVI 233
             W  LQ  V    +SD+  +   M    P  G  Q L+ K+G FR ++ GKRV+Y  R+VI
Sbjct:   398 WIRLQSHVNIVFDSDMDKL---MLEKYP--GIRQILEKKEGLFRKHMMGKRVDYAARSVI 452

Query:   234 SPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTAR 293
              PD  +   E+ IP+  A  LTYP+ V+  N+++LRQ + NGP+ +PGA M+   DG+  
Sbjct:   453 CPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRT 512

Query:   294 VLYG---KFRNQLAVEL---KSGC-------IVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
              L       R  +A +L    +G        +V RH+++GD++L NRQP+LHR SI  HR
Sbjct:   513 ALSAVDATQREAVAKQLLTPSTGIPKPQGAKVVCRHVKNGDILLLNRQPTLHRPSIQAHR 572

Query:   341 ARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A I+P  + LR + + C  YNADFDGDEMN H PQ+E  R EA +L         PK+G+
Sbjct:   573 AHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQ 632

Query:   400 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG--DGMDRVDLPTPAILKPVELWTG 457
              L    QD + S   +T +  F+ R  + +   Y G  D + RV L  PAILKP  LWTG
Sbjct:   633 PLAGLIQDHMVSGANMTIRGCFFTREQY-MELVYRGLTDKVGRVKLFPPAILKPFPLWTG 691

Query:   458 KQLFS-VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSEL 516
             KQ+ S +LI         +NLT K K  S   ++ +       +     +  V  R  EL
Sbjct:   692 KQVVSTLLINIIPEDYTPLNLTGKAKIGSKAWVKEKPRPVPDFDPDSMCESQVIIREGEL 751

Query:   517 ISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH-GFSIGIDDVQ 575
             + G L KA  G+ +  GL       YG   +   +  LA+L   ++  + GF++G++D+ 
Sbjct:   752 LCGVLDKAHYGS-SAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDIL 810

Query:   576 PKKELSDKKGKLISEN 591
              K      + ++I E+
Sbjct:   811 VKPNADVMRQRIIEES 826

 Score = 335 (123.0 bits), Expect = 7.3e-114, Sum P(5) = 7.3e-114
 Identities = 75/158 (47%), Positives = 97/158 (61%)

Query:   627 LNRIREDAGKACM--G---SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
             +N    +  KACM  G     P  N+  +M Q G+KGS +N  Q+   +GQ  + GRR P
Sbjct:   876 VNHYSNEINKACMPFGLHRQFP-ENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPP 934

Query:   682 NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
                  +SLP F      P A GFV   F +G+   EFFFH M GREGLVDTAVKT+ +GY
Sbjct:   935 LMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGY 994

Query:   742 MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
             + R +IK LE L IQYD +VR++ G +VQFLYG+DG+D
Sbjct:   995 LQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLD 1032

 Score = 213 (80.0 bits), Expect = 7.3e-114, Sum P(5) = 7.3e-114
 Identities = 64/196 (32%), Positives = 101/196 (51%)

Query:   806 PAGQRYLSPQQVSEIVEKQLAAYGKES--CSEAFLNSLRK--FFEGQQDKLDKKIKFVED 861
             P  Q+ L  Q   E+ E+    Y K +  C +  L+  R    F    +  +KKI   +D
Sbjct:  1122 PETQQML--QMWHELDEQSRRKYQKRAAPCPDPSLSVWRPDIHFASVSETFEKKI---DD 1176

Query:   862 IGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGT 921
                +  +Q   E +H  S ++  +L   +Q  + R      + G A+G + AQSIGEP T
Sbjct:  1177 YSQEWAAQA--EKSHNRSELSLDRLRTLLQLKWQR---SLCDPGEAVGLLAAQSIGEPST 1231

Query:   922 QMTLKTFHFAGVASMNITQGVPRIKEIINGAK-RISTPIITAELECNDNENAARV--VKG 978
             QMTL TFHFAG   MN+T G+PR++EI+  A   I TP+++  +  N  +   RV  +K 
Sbjct:  1232 QMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPV-FNTKKALRRVKSLKK 1290

Query:   979 RIEKTLLGQVAKSIKI 994
             ++ +  LG+V + + I
Sbjct:  1291 QLTRVCLGEVLQKVDI 1306

 Score = 197 (74.4 bits), Expect = 7.3e-114, Sum P(5) = 7.3e-114
 Identities = 49/141 (34%), Positives = 75/141 (53%)

Query:  1108 LLVEGTGLQAVMG-AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  EG  L  +   +E +D  +  SN I  V  T GIEAA   I  EI +    +G+++D
Sbjct:  1574 LNTEGINLPELFKYSEVLDLRRLYSNDIHAVANTYGIEAALRVIEKEIKDVFAVYGIAVD 1633

Query:  1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
              RH+ L+AD M F G    + RFGIQ    S L   +FE +   L  A++ G  D ++  
Sbjct:  1634 PRHLSLVADYMCFEGVYKPLNRFGIQS-SSSPLQQMTFETSFQFLKQATMMGSHDELKSP 1692

Query:  1227 SECIIMGIPMPLGTGILKIRQ 1247
             S C+++G  +  GTG+ +++Q
Sbjct:  1693 SACLVVGKVVKGGTGLFELKQ 1713

 Score = 46 (21.3 bits), Expect = 7.3e-114, Sum P(5) = 7.3e-114
 Identities = 19/70 (27%), Positives = 32/70 (45%)

Query:    93 FLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQ 152
             +LF  + D   E  +    P    +  I VPP   RP +   G Q   N  T  L+ +++
Sbjct:   285 YLFSGLDDIGPESSF---NPSMFFLDFIVVPPSRYRP-INRLGDQMFTNGQTVNLQAVMK 340

Query:   153 TNASLQQELV 162
              +A L ++L+
Sbjct:   341 -DAVLIRKLL 349

 Score = 45 (20.9 bits), Expect = 9.5e-57, Sum P(4) = 9.5e-57
 Identities = 16/68 (23%), Positives = 33/68 (48%)

Query:   177 LQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY--TGRTVIS 234
             +Q E+ +Y +  ++      Q A   +    R K     ++ +++ KR  +  TGR+V+ 
Sbjct:   157 IQEELEEYTSKILQNNLLGSQGAHVKNVCESRSKLVAHFWKTHMAAKRCPHCKTGRSVVR 216

Query:   235 PDPNLKIT 242
              + N K+T
Sbjct:   217 KEHNSKLT 224

 Score = 44 (20.5 bits), Expect = 2.2e-80, Sum P(4) = 2.2e-80
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query:   908 IGAIGAQSIGEPGTQMTLKT-FHFAGVASM 936
             +   G QS   P  QMT +T F F   A+M
Sbjct:  1653 LNRFGIQSSSSPLQQMTFETSFQFLKQATM 1682

 Score = 43 (20.2 bits), Expect = 2.0e-08, Sum P(4) = 2.0e-08
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query:   224 RVEYTGRTVISPDPNLKITEVAIPIRMARIL-TYPERVSDHNIE 266
             R +Y  R    PDP+L +      I  A +  T+ +++ D++ E
Sbjct:  1139 RRKYQKRAAPCPDPSLSVWRP--DIHFASVSETFEKKIDDYSQE 1180

 Score = 42 (19.8 bits), Expect = 2.0e-56, Sum P(4) = 2.0e-56
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query:   525 TLGNGNKDGLYSVLL 539
             +LGN + DGLY + L
Sbjct:    41 SLGNPSADGLYDLAL 55

 Score = 41 (19.5 bits), Expect = 3.2e-83, Sum P(5) = 3.2e-83
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query:   567 FSIGIDDVQ-PKKE-LSDKKGKLISENYEVCNVKIKEYNE 604
             F  G D +  PK + L  K+   ++ NYEV  +K K  +E
Sbjct:  1024 FLYGEDGLDIPKTQFLQPKQFPFLASNYEVI-MKSKHLHE 1062

 Score = 41 (19.5 bits), Expect = 2.5e-56, Sum P(4) = 2.5e-56
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query:   534 LYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
             L + LL   GAH  + C +R +KL A +   H
Sbjct:   169 LQNNLLGSQGAHVKNVCESR-SKLVAHFWKTH 199

 Score = 39 (18.8 bits), Expect = 4.6e-26, Sum P(3) = 4.6e-26
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query:   750 LEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATC 804
             L DL++   +S      C+  F      +   ++      PL FD+L + ++ +C
Sbjct:    50 LYDLALGPADSKEVCSTCVQDFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSC 104

 Score = 38 (18.4 bits), Expect = 3.7e-25, Sum P(4) = 3.7e-25
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query:    25 MASKAVKCPRCGYINGMVKKAVAVLGIIHD 54
             +   AVK  R GY+   + K +  L I +D
Sbjct:   982 LVDTAVKTSRSGYLQRCIIKHLEGLVIQYD 1011

 Score = 37 (18.1 bits), Expect = 2.0e-08, Sum P(4) = 2.0e-08
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query:   306 ELKSGCIVDRHLEDGD 321
             E + G IVD   E+GD
Sbjct:  1401 EEEEGNIVDAEAEEGD 1416


>UNIPROTKB|G3V7B7 [details] [associations]
            symbol:Polr1a "DNA-directed RNA polymerase" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CH473957
            GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
            GeneTree:ENSGT00550000074861 UniGene:Rn.24877
            Ensembl:ENSRNOT00000013587 Uniprot:G3V7B7
        Length = 1716

 Score = 578 (208.5 bits), Expect = 7.3e-114, Sum P(5) = 7.3e-114
 Identities = 154/436 (35%), Positives = 227/436 (52%)

Query:   174 WETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVI 233
             W  LQ  V    +SD+  +   M    P  G  Q L+ K+G FR ++ GKRV+Y  R+VI
Sbjct:   398 WIRLQSHVNIVFDSDMDKL---MLEKYP--GIRQILEKKEGLFRKHMMGKRVDYAARSVI 452

Query:   234 SPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTAR 293
              PD  +   E+ IP+  A  LTYP+ V+  N+++LRQ + NGP+ +PGA M+   DG+  
Sbjct:   453 CPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRT 512

Query:   294 VLYG---KFRNQLAVEL---KSGC-------IVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
              L       R  +A +L    +G        +V RH+++GD++L NRQP+LHR SI  HR
Sbjct:   513 ALSAVDATQREAVAKQLLTPSTGIPKPQGAKVVCRHVKNGDILLLNRQPTLHRPSIQAHR 572

Query:   341 ARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A I+P  + LR + + C  YNADFDGDEMN H PQ+E  R EA +L         PK+G+
Sbjct:   573 AHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQ 632

Query:   400 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG--DGMDRVDLPTPAILKPVELWTG 457
              L    QD + S   +T +  F+ R  + +   Y G  D + RV L  PAILKP  LWTG
Sbjct:   633 PLAGLIQDHMVSGANMTIRGCFFTREQY-MELVYRGLTDKVGRVKLFPPAILKPFPLWTG 691

Query:   458 KQLFS-VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSEL 516
             KQ+ S +LI         +NLT K K  S   ++ +       +     +  V  R  EL
Sbjct:   692 KQVVSTLLINIIPEDYTPLNLTGKAKIGSKAWVKEKPRPVPDFDPDSMCESQVIIREGEL 751

Query:   517 ISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH-GFSIGIDDVQ 575
             + G L KA  G+ +  GL       YG   +   +  LA+L   ++  + GF++G++D+ 
Sbjct:   752 LCGVLDKAHYGS-SAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDIL 810

Query:   576 PKKELSDKKGKLISEN 591
              K      + ++I E+
Sbjct:   811 VKPNADVMRQRIIEES 826

 Score = 335 (123.0 bits), Expect = 7.3e-114, Sum P(5) = 7.3e-114
 Identities = 75/158 (47%), Positives = 97/158 (61%)

Query:   627 LNRIREDAGKACM--G---SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
             +N    +  KACM  G     P  N+  +M Q G+KGS +N  Q+   +GQ  + GRR P
Sbjct:   876 VNHYSNEINKACMPFGLHRQFP-ENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPP 934

Query:   682 NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
                  +SLP F      P A GFV   F +G+   EFFFH M GREGLVDTAVKT+ +GY
Sbjct:   935 LMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGY 994

Query:   742 MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
             + R +IK LE L IQYD +VR++ G +VQFLYG+DG+D
Sbjct:   995 LQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLD 1032

 Score = 213 (80.0 bits), Expect = 7.3e-114, Sum P(5) = 7.3e-114
 Identities = 64/196 (32%), Positives = 101/196 (51%)

Query:   806 PAGQRYLSPQQVSEIVEKQLAAYGKES--CSEAFLNSLRK--FFEGQQDKLDKKIKFVED 861
             P  Q+ L  Q   E+ E+    Y K +  C +  L+  R    F    +  +KKI   +D
Sbjct:  1122 PETQQML--QMWHELDEQSRRKYQKRAAPCPDPSLSVWRPDIHFASVSETFEKKI---DD 1176

Query:   862 IGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGT 921
                +  +Q   E +H  S ++  +L   +Q  + R      + G A+G + AQSIGEP T
Sbjct:  1177 YSQEWAAQA--EKSHNRSELSLDRLRTLLQLKWQR---SLCDPGEAVGLLAAQSIGEPST 1231

Query:   922 QMTLKTFHFAGVASMNITQGVPRIKEIINGAK-RISTPIITAELECNDNENAARV--VKG 978
             QMTL TFHFAG   MN+T G+PR++EI+  A   I TP+++  +  N  +   RV  +K 
Sbjct:  1232 QMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPV-FNTKKALRRVKSLKK 1290

Query:   979 RIEKTLLGQVAKSIKI 994
             ++ +  LG+V + + I
Sbjct:  1291 QLTRVCLGEVLQKVDI 1306

 Score = 197 (74.4 bits), Expect = 7.3e-114, Sum P(5) = 7.3e-114
 Identities = 49/141 (34%), Positives = 75/141 (53%)

Query:  1108 LLVEGTGLQAVMG-AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  EG  L  +   +E +D  +  SN I  V  T GIEAA   I  EI +    +G+++D
Sbjct:  1574 LNTEGINLPELFKYSEVLDLRRLYSNDIHAVANTYGIEAALRVIEKEIKDVFAVYGIAVD 1633

Query:  1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
              RH+ L+AD M F G    + RFGIQ    S L   +FE +   L  A++ G  D ++  
Sbjct:  1634 PRHLSLVADYMCFEGVYKPLNRFGIQS-SSSPLQQMTFETSFQFLKQATMMGSHDELKSP 1692

Query:  1227 SECIIMGIPMPLGTGILKIRQ 1247
             S C+++G  +  GTG+ +++Q
Sbjct:  1693 SACLVVGKVVKGGTGLFELKQ 1713

 Score = 46 (21.3 bits), Expect = 7.3e-114, Sum P(5) = 7.3e-114
 Identities = 19/70 (27%), Positives = 32/70 (45%)

Query:    93 FLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQ 152
             +LF  + D   E  +    P    +  I VPP   RP +   G Q   N  T  L+ +++
Sbjct:   285 YLFSGLDDIGPESSF---NPSMFFLDFIVVPPSRYRP-INRLGDQMFTNGQTVNLQAVMK 340

Query:   153 TNASLQQELV 162
              +A L ++L+
Sbjct:   341 -DAVLIRKLL 349

 Score = 45 (20.9 bits), Expect = 9.5e-57, Sum P(4) = 9.5e-57
 Identities = 16/68 (23%), Positives = 33/68 (48%)

Query:   177 LQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY--TGRTVIS 234
             +Q E+ +Y +  ++      Q A   +    R K     ++ +++ KR  +  TGR+V+ 
Sbjct:   157 IQEELEEYTSKILQNNLLGSQGAHVKNVCESRSKLVAHFWKTHMAAKRCPHCKTGRSVVR 216

Query:   235 PDPNLKIT 242
              + N K+T
Sbjct:   217 KEHNSKLT 224

 Score = 44 (20.5 bits), Expect = 2.2e-80, Sum P(4) = 2.2e-80
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query:   908 IGAIGAQSIGEPGTQMTLKT-FHFAGVASM 936
             +   G QS   P  QMT +T F F   A+M
Sbjct:  1653 LNRFGIQSSSSPLQQMTFETSFQFLKQATM 1682

 Score = 43 (20.2 bits), Expect = 2.0e-08, Sum P(4) = 2.0e-08
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query:   224 RVEYTGRTVISPDPNLKITEVAIPIRMARIL-TYPERVSDHNIE 266
             R +Y  R    PDP+L +      I  A +  T+ +++ D++ E
Sbjct:  1139 RRKYQKRAAPCPDPSLSVWRP--DIHFASVSETFEKKIDDYSQE 1180

 Score = 42 (19.8 bits), Expect = 2.0e-56, Sum P(4) = 2.0e-56
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query:   525 TLGNGNKDGLYSVLL 539
             +LGN + DGLY + L
Sbjct:    41 SLGNPSADGLYDLAL 55

 Score = 41 (19.5 bits), Expect = 3.2e-83, Sum P(5) = 3.2e-83
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query:   567 FSIGIDDVQ-PKKE-LSDKKGKLISENYEVCNVKIKEYNE 604
             F  G D +  PK + L  K+   ++ NYEV  +K K  +E
Sbjct:  1024 FLYGEDGLDIPKTQFLQPKQFPFLASNYEVI-MKSKHLHE 1062

 Score = 41 (19.5 bits), Expect = 2.5e-56, Sum P(4) = 2.5e-56
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query:   534 LYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
             L + LL   GAH  + C +R +KL A +   H
Sbjct:   169 LQNNLLGSQGAHVKNVCESR-SKLVAHFWKTH 199

 Score = 39 (18.8 bits), Expect = 4.6e-26, Sum P(3) = 4.6e-26
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query:   750 LEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATC 804
             L DL++   +S      C+  F      +   ++      PL FD+L + ++ +C
Sbjct:    50 LYDLALGPADSKEVCSTCVQDFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSC 104

 Score = 38 (18.4 bits), Expect = 3.7e-25, Sum P(4) = 3.7e-25
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query:    25 MASKAVKCPRCGYINGMVKKAVAVLGIIHD 54
             +   AVK  R GY+   + K +  L I +D
Sbjct:   982 LVDTAVKTSRSGYLQRCIIKHLEGLVIQYD 1011

 Score = 37 (18.1 bits), Expect = 2.0e-08, Sum P(4) = 2.0e-08
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query:   306 ELKSGCIVDRHLEDGD 321
             E + G IVD   E+GD
Sbjct:  1401 EEEEGNIVDAEAEEGD 1416


>MGI|MGI:1096397 [details] [associations]
            symbol:Polr1a "polymerase (RNA) I polypeptide A"
            species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005736 "DNA-directed RNA
            polymerase I complex" evidence=ISO;IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0009303 "rRNA transcription" evidence=ISO]
            [GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
            "nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
            ion binding" evidence=IEA] Reactome:REACT_78136 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 MGI:MGI:1096397 GO:GO:0005654 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086
            CleanEx:MM_RPA1 Reactome:REACT_86751 KO:K02999 OMA:CLLNETT
            PANTHER:PTHR19376:SF11 CTD:25885 HOGENOM:HOG000205401
            HOVERGEN:HBG017741 OrthoDB:EOG41VK23 ChiTaRS:POLR1A EMBL:AF000938
            EMBL:BC053744 IPI:IPI00313726 PIR:T13961 RefSeq:NP_033114.3
            UniGene:Mm.135581 ProteinModelPortal:O35134 SMR:O35134
            STRING:O35134 PhosphoSite:O35134 PaxDb:O35134 PRIDE:O35134
            Ensembl:ENSMUST00000055296 GeneID:20019 KEGG:mmu:20019
            UCSC:uc009chv.2 GeneTree:ENSGT00550000074861 InParanoid:O35134
            NextBio:297531 Bgee:O35134 Genevestigator:O35134
            GermOnline:ENSMUSG00000049553 Uniprot:O35134
        Length = 1717

 Score = 575 (207.5 bits), Expect = 3.3e-113, Sum P(5) = 3.3e-113
 Identities = 146/406 (35%), Positives = 217/406 (53%)

Query:   204 GFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDH 263
             G  Q L+ K+G FR ++ GKRV+Y  R+VI PD  +   E+ IP+  A  LTYP+ V+  
Sbjct:   423 GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPW 482

Query:   264 NIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYG---KFRNQLAVEL---KSGC------ 311
             N+++LRQ + NGP+ +PGA M+   DG+   L       R  +A +L    +G       
Sbjct:   483 NVQELRQAVINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTPATGAPKPQGT 542

Query:   312 -IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMN 369
              +V RH+++GD++L NRQP+LHR SI  HRARI+P  + LR + + C  YNADFDGDEMN
Sbjct:   543 KVVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMN 602

Query:   370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
              H PQ+E  R EA +L         PK+G+ L    QD + S   +T +  F+ R  + +
Sbjct:   603 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQY-M 661

Query:   430 MCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS-VLIRPHANMRVYVNLTVKEKTYSN 486
                Y G  D + RV L  PAILKP  LWTGKQ+ S +LI         +NL+ K K  S 
Sbjct:   662 ELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLNLSGKAKIGSK 721

Query:   487 KLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHA 546
               ++ +       +     +  V  R  EL+ G L KA  G+ +  GL       YG   
Sbjct:   722 AWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGS-SAYGLVHCCYEIYGGET 780

Query:   547 TSGCMNRLAKLSARWIGNH-GFSIGIDDVQPKKELSDKKGKLISEN 591
             +   +  LA+L   ++  + GF++G++D+  K      + ++I E+
Sbjct:   781 SGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEES 826

 Score = 335 (123.0 bits), Expect = 3.3e-113, Sum P(5) = 3.3e-113
 Identities = 75/158 (47%), Positives = 97/158 (61%)

Query:   627 LNRIREDAGKACM--G---SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
             +N    +  KACM  G     P  N+  +M Q G+KGS +N  Q+   +GQ  + GRR P
Sbjct:   876 VNHYSNEINKACMPLGLHRQFP-ENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPP 934

Query:   682 NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
                  +SLP F      P A GFV   F +G+   EFFFH M GREGLVDTAVKT+ +GY
Sbjct:   935 LMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGY 994

Query:   742 MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
             + R +IK LE L IQYD +VR++ G +VQFLYG+DG+D
Sbjct:   995 LQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLD 1032

 Score = 213 (80.0 bits), Expect = 3.3e-113, Sum P(5) = 3.3e-113
 Identities = 64/197 (32%), Positives = 103/197 (52%)

Query:   806 PAGQRYLSPQQVSEIVEKQLAAYGKES--CSEAFLNSLRK--FFEGQQDKLDKKIKFVED 861
             P  Q+ L  Q   ++ E+    Y K +  C +  L+  R   +F    +  +KKI   +D
Sbjct:  1122 PETQQML--QMWYDLDEESRWKYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKI---DD 1176

Query:   862 IGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGT 921
                +  +Q   E ++K S ++  +L   +Q  + R      + G A+G + AQSIGEP T
Sbjct:  1177 FSQEWAAQA--ERSYKKSELSLDRLRTLLQLKWQR---SLCDPGEAVGLLAAQSIGEPST 1231

Query:   922 QMTLKTFHFAGVASMNITQGVPRIKEIINGAK-RISTPIITAELECNDNENAARVVKG-- 978
             QMTL TFHFAG   MN+T G+PR++EI+  A   I TP+++  +   D + A + VK   
Sbjct:  1232 QMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF--DTKKALKKVKSLK 1289

Query:   979 -RIEKTLLGQVAKSIKI 994
              R+ +  LG+V + + I
Sbjct:  1290 KRLTRVCLGEVLQKVDI 1306

 Score = 193 (73.0 bits), Expect = 3.3e-113, Sum P(5) = 3.3e-113
 Identities = 48/141 (34%), Positives = 75/141 (53%)

Query:  1108 LLVEGTGLQAVMG-AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  EG  L  +   +E +D  +  SN I  +  T GIEAA   I  EI +    +G+++D
Sbjct:  1575 LNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVD 1634

Query:  1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
              RH+ L+AD M F G    + RFGIQ    S L   +FE +   L  A++ G  D ++  
Sbjct:  1635 PRHLSLVADYMCFEGVYKPLNRFGIQS-SSSPLQQMTFETSFQFLKQATMMGSHDELKSP 1693

Query:  1227 SECIIMGIPMPLGTGILKIRQ 1247
             S C+++G  +  GTG+ +++Q
Sbjct:  1694 SACLVVGKVVKGGTGLFELKQ 1714

 Score = 50 (22.7 bits), Expect = 8.4e-57, Sum P(5) = 8.4e-57
 Identities = 40/168 (23%), Positives = 66/168 (39%)

Query:   235 PDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-RYPDGTAR 293
             P P+L  T+    I + R+ ++   V D  ++KL        +KYPG R I    +G  R
Sbjct:   386 PGPSL--TDKLYNIWI-RLQSHVNIVFDSEMDKLML------EKYPGIRQILEKKEGLFR 436

Query:   294 V-LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 352
               + GK R   A   +S    D ++   ++ +    P +    +  +   + PW      
Sbjct:   437 KHMMGK-RVDYAA--RSVICPDMYINTNEIGI----PMVFATKLT-YPQPVTPWNVQELR 488

Query:   353 ESVCNPYNADFDGDEM--NMHVPQTEEARTEALLLMGVQNNLCTPKNG 398
             ++V N  N    G  M  N    +T  +  +A     V   L TP  G
Sbjct:   489 QAVINGPNVH-PGASMVINEDGSRTALSSVDAAQREAVAKQLLTPATG 535

 Score = 47 (21.6 bits), Expect = 3.3e-113, Sum P(5) = 3.3e-113
 Identities = 20/70 (28%), Positives = 32/70 (45%)

Query:    93 FLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQ 152
             +LF  + D   E  +    P    +  I VPP   RP V   G Q   N  T  L+ +++
Sbjct:   285 YLFSGLDDIGPESSF---NPSMFFLDFIVVPPSRYRP-VNRLGDQMFTNGQTVNLQAVMK 340

Query:   153 TNASLQQELV 162
              +A L ++L+
Sbjct:   341 -DAVLIRKLL 349

 Score = 44 (20.5 bits), Expect = 3.7e-80, Sum P(4) = 3.7e-80
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query:   908 IGAIGAQSIGEPGTQMTLKT-FHFAGVASM 936
             +   G QS   P  QMT +T F F   A+M
Sbjct:  1654 LNRFGIQSSSSPLQQMTFETSFQFLKQATM 1683

 Score = 42 (19.8 bits), Expect = 6.3e-08, Sum P(3) = 6.3e-08
 Identities = 28/147 (19%), Positives = 57/147 (38%)

Query:   741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
             Y+       L DL++   +S      C+  F      +   ++      P  FD+L + +
Sbjct:    41 YLGNPSANGLYDLALGPADSKEVCATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLL 100

Query:   801 KATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKI-KFV 859
             + +C         P+    ++  QL            + +L+  +E     L++ + +F+
Sbjct:   101 RGSCLSC-HMLTCPRAAIYLLISQLRVLE--------VGALQAVYE-----LERILSRFL 146

Query:   860 EDIGWDDKSQILEEVTHKTSGITEKQL 886
             E+ G     +I EE+   TS I +  L
Sbjct:   147 EETGDPSAFEIQEELEEYTSKILQNNL 173

 Score = 38 (18.4 bits), Expect = 1.3e-55, Sum P(4) = 1.3e-55
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query:   534 LYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
             L + LL   G H  + C +R +KL A++   H
Sbjct:   169 LQNNLLGSQGTHVKNVCESR-SKLVAQFWKTH 199

 Score = 38 (18.4 bits), Expect = 1.5e-25, Sum P(3) = 1.5e-25
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query:    25 MASKAVKCPRCGYINGMVKKAVAVLGIIHD 54
             +   AVK  R GY+   + K +  L I +D
Sbjct:   982 LVDTAVKTSRSGYLQRCIIKHLEGLVIQYD 1011

 Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query:   224 RVEYTGRTVISPDPNLKITEVAIPIRMARIL-TYPERVSDHNIE 266
             R +Y  R    PDP+L +      I  A +  T+ +++ D + E
Sbjct:  1139 RWKYQKRAAPCPDPSLSVWRP--DIYFASVSETFEKKIDDFSQE 1180

 Score = 37 (18.1 bits), Expect = 1.3e-64, Sum P(4) = 1.3e-64
 Identities = 6/19 (31%), Positives = 14/19 (73%)

Query:  1012 IQDAHLCINADIVKESIVQ 1030
             ++D  +  NAD+V++ I++
Sbjct:   806 VEDILVKPNADVVRQRIIE 824

 Score = 37 (18.1 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query:   306 ELKSGCIVDRHLEDGD 321
             E + G IVD   E+GD
Sbjct:  1401 EEEEGNIVDAEAEEGD 1416


>UNIPROTKB|J9P5G4 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase" species:9615
            "Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 KO:K02999 PANTHER:PTHR19376:SF11
            CTD:25885 GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
            RefSeq:XP_532976.3 Ensembl:ENSCAFT00000047500 GeneID:475766
            KEGG:cfa:475766 Uniprot:J9P5G4
        Length = 1717

 Score = 572 (206.4 bits), Expect = 6.8e-113, Sum P(4) = 6.8e-113
 Identities = 150/411 (36%), Positives = 218/411 (53%)

Query:   204 GFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDH 263
             G  Q L+ K G FR ++ GKRV+Y  R+VI PD  +   E+ IP+  A  LTYP+ V+  
Sbjct:   416 GIRQILEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPW 475

Query:   264 NIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYG---KFRNQLAVEL---KSGC------ 311
             N+++LRQ + NGP+ +PGA M+   DG+   L       R  +A +L    +G       
Sbjct:   476 NVQELRQAVINGPNVHPGASMVINEDGSRTALSAIDLTQREAVAKQLLTPATGAPKPQGT 535

Query:   312 -IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMN 369
              IV RH+++GD++L NRQP+LHR SI  H ARI+P  + LR + + C  YNADFDGDEMN
Sbjct:   536 KIVCRHVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMN 595

Query:   370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
              H PQ+E  R EA +L         PK+G+ L    QD + S   +T +  F+ R  + +
Sbjct:   596 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQY-M 654

Query:   430 MCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS-VLIRPHANMRVYVNLTVKEKTYSN 486
                Y G  D + RV L  PAILKP  LWTGKQ+ S +LI       + ++L+ K K  S 
Sbjct:   655 ELLYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLSLSGKAKI-SG 713

Query:   487 KLIRTEGDEEIR-IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAH 545
             K    E    +         +  V  R  EL+ G L KA  G+ +  GL       YG  
Sbjct:   714 KAWVQESPRPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGS-SAYGLVHCCYEIYGGE 772

Query:   546 ATSGCMNRLAKLSARWIGNH-GFSIGIDDVQPKKELSDKKGKLISENYEVC 595
              +   +  LA+L   ++  + GF++G++D+  K++ +D K  L+ E    C
Sbjct:   773 TSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKRK-ADMKRHLVIEESTHC 822

 Score = 333 (122.3 bits), Expect = 6.8e-113, Sum P(4) = 6.8e-113
 Identities = 73/157 (46%), Positives = 95/157 (60%)

Query:   627 LNRIREDAGKACMGSLPWRNSP----LIMSQCGSKGSPINISQMVACVGQQSVGGRRAPN 682
             +N    +  KACM     R  P     +M Q G+KGS +N  Q+   +GQ  + GRR P 
Sbjct:   869 VNHYSNEINKACMPFGLHRQFPDNNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPL 928

Query:   683 GFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYM 742
                 +SLP F      P A GFV   F +G+   EFFFH M GREGLVDTAVKT+ +GY+
Sbjct:   929 MASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYL 988

Query:   743 SRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
              R +IK LE L +QYD +VR++ G +VQFLYG+DG+D
Sbjct:   989 QRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1025

 Score = 214 (80.4 bits), Expect = 6.8e-113, Sum P(4) = 6.8e-113
 Identities = 71/229 (31%), Positives = 115/229 (50%)

Query:   781 ANMEGKSGEPLNFDRLLMK-VKATCPPAGQ---RYLSPQQV----SEIVEKQLAAYGKES 832
             +N   + G  LN+ + +   VKA     G    R L   Q+     E+ E+    Y K++
Sbjct:  1080 SNALQRKGAFLNYSQKIQAAVKALNLEDGNQNGRSLGTHQILKMWGELDEQSRRKYQKKA 1139

Query:   833 --CSEAFLNSLRK--FFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEV 888
               C +  L   R   +F    +  +KK   V+D   +  +Q   E ++K S ++  +L  
Sbjct:  1140 APCPDPSLAVWRPDIYFASVSETFEKK---VDDYSLEWAAQA--EKSYKKSELSLDRLRT 1194

Query:   889 FIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEI 948
              +Q  + R      + G A+G + AQSIGEP TQMTL TFHFAG   MN+T G+PR++EI
Sbjct:  1195 LLQLKWQR---SLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREI 1251

Query:   949 INGAK-RISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKI 994
             +  A   I TP+++  +  N  +   RV  +K ++ +  LG+V + I +
Sbjct:  1252 LMVASANIKTPMMSVPV-FNTKKALKRVKSLKKQLTRVCLGEVLEKIDV 1299

 Score = 195 (73.7 bits), Expect = 6.8e-113, Sum P(4) = 6.8e-113
 Identities = 48/141 (34%), Positives = 75/141 (53%)

Query:  1108 LLVEGTGLQAVMG-AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  EG  L  +   AE +D  +  SN I  +  T GIEAA   I  EI +    +G+++D
Sbjct:  1575 LNTEGINLPELFKYAEVLDLSRLYSNDIHAMASTYGIEAALRVIEKEIRDVFAVYGIAVD 1634

Query:  1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
              RH+ L+AD M F G    + RFGI+  + S L   +FE +   L  A++ G  D +   
Sbjct:  1635 PRHLSLVADYMCFEGVYKPLNRFGIRS-NSSPLQQMTFETSFQFLKQATMMGSHDELRSP 1693

Query:  1227 SECIIMGIPMPLGTGILKIRQ 1247
             S C+++G  +  GTG+ +++Q
Sbjct:  1694 SACLVVGKVVKGGTGLFELKQ 1714

 Score = 55 (24.4 bits), Expect = 3.4e-57, Sum P(5) = 3.4e-57
 Identities = 40/173 (23%), Positives = 68/173 (39%)

Query:   230 RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-RYP 288
             R+ +S  P   +T+    I + R+ ++   V D  ++KL        +KYPG R I    
Sbjct:   372 RSFLSMLPGQSLTDKLYNIWI-RLQSHVNIVFDSEMDKLMM------EKYPGIRQILEKK 424

Query:   289 DGTARV-LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
             DG  R  + GK R   A   +S    D ++   ++ +    P +    +  +   + PW 
Sbjct:   425 DGLFRKHMMGK-RVDYAA--RSVICPDMYINTNEIGI----PMVFATKLT-YPQPVTPWN 476

Query:   348 TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM--GVQNNLCTPKNG 398
                  ++V N  N    G  M ++   +  A +   L     V   L TP  G
Sbjct:   477 VQELRQAVINGPNVH-PGASMVINEDGSRTALSAIDLTQREAVAKQLLTPATG 528

 Score = 45 (20.9 bits), Expect = 3.4e-57, Sum P(5) = 3.4e-57
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query:   216 FRGNLSGKRVEY--TGRTVISPDPNLKITEVAIP 247
             ++ +++ KR  +  TGR+V+  + N K+T V  P
Sbjct:   196 WKAHMTAKRCPHCKTGRSVVRKEHNSKLT-VTYP 228

 Score = 38 (18.4 bits), Expect = 1.3e-54, Sum P(5) = 1.3e-54
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query:   538 LLRDYGAHATSGCMNRLAKLSARW 561
             LL  +GAH  + C +R   ++  W
Sbjct:   173 LLGPHGAHVKNVCDSRSKLIAYFW 196

 Score = 38 (18.4 bits), Expect = 9.8e-08, Sum P(3) = 9.8e-08
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query:   790 PLNFDRLLMKVKATC 804
             PL FD+L + ++ +C
Sbjct:    90 PLLFDKLYLLLRGSC 104

 Score = 37 (18.1 bits), Expect = 1.3e-54, Sum P(5) = 1.3e-54
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query:   525 TLGNGNKDGLYSVLL 539
             +LGN + +GLY + L
Sbjct:    41 SLGNPSANGLYDLAL 55

 Score = 37 (18.1 bits), Expect = 9.3e-26, Sum P(3) = 9.3e-26
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query:    25 MASKAVKCPRCGYINGMVKKAVAVLGIIHD 54
             +   AVK  R GY+   + K +  L + +D
Sbjct:   975 LVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004

 Score = 37 (18.1 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query:   306 ELKSGCIVDRHLEDGD 321
             E + G IVD   E+GD
Sbjct:  1394 EEEEGPIVDAEAEEGD 1409


>UNIPROTKB|E2R0G4 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase" species:9615
            "Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
            GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
            Ensembl:ENSCAFT00000012228 Uniprot:E2R0G4
        Length = 1746

 Score = 572 (206.4 bits), Expect = 7.7e-113, Sum P(4) = 7.7e-113
 Identities = 150/411 (36%), Positives = 218/411 (53%)

Query:   204 GFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDH 263
             G  Q L+ K G FR ++ GKRV+Y  R+VI PD  +   E+ IP+  A  LTYP+ V+  
Sbjct:   428 GIRQILEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPW 487

Query:   264 NIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYG---KFRNQLAVEL---KSGC------ 311
             N+++LRQ + NGP+ +PGA M+   DG+   L       R  +A +L    +G       
Sbjct:   488 NVQELRQAVINGPNVHPGASMVINEDGSRTALSAIDLTQREAVAKQLLTPATGAPKPQGT 547

Query:   312 -IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMN 369
              IV RH+++GD++L NRQP+LHR SI  H ARI+P  + LR + + C  YNADFDGDEMN
Sbjct:   548 KIVCRHVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMN 607

Query:   370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
              H PQ+E  R EA +L         PK+G+ L    QD + S   +T +  F+ R  + +
Sbjct:   608 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQY-M 666

Query:   430 MCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS-VLIRPHANMRVYVNLTVKEKTYSN 486
                Y G  D + RV L  PAILKP  LWTGKQ+ S +LI       + ++L+ K K  S 
Sbjct:   667 ELLYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLSLSGKAKI-SG 725

Query:   487 KLIRTEGDEEIR-IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAH 545
             K    E    +         +  V  R  EL+ G L KA  G+ +  GL       YG  
Sbjct:   726 KAWVQESPRPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGS-SAYGLVHCCYEIYGGE 784

Query:   546 ATSGCMNRLAKLSARWIGNH-GFSIGIDDVQPKKELSDKKGKLISENYEVC 595
              +   +  LA+L   ++  + GF++G++D+  K++ +D K  L+ E    C
Sbjct:   785 TSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKRK-ADMKRHLVIEESTHC 834

 Score = 333 (122.3 bits), Expect = 7.7e-113, Sum P(4) = 7.7e-113
 Identities = 73/157 (46%), Positives = 95/157 (60%)

Query:   627 LNRIREDAGKACMGSLPWRNSP----LIMSQCGSKGSPINISQMVACVGQQSVGGRRAPN 682
             +N    +  KACM     R  P     +M Q G+KGS +N  Q+   +GQ  + GRR P 
Sbjct:   881 VNHYSNEINKACMPFGLHRQFPDNNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPL 940

Query:   683 GFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYM 742
                 +SLP F      P A GFV   F +G+   EFFFH M GREGLVDTAVKT+ +GY+
Sbjct:   941 MASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYL 1000

Query:   743 SRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
              R +IK LE L +QYD +VR++ G +VQFLYG+DG+D
Sbjct:  1001 QRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1037

 Score = 214 (80.4 bits), Expect = 7.7e-113, Sum P(4) = 7.7e-113
 Identities = 71/229 (31%), Positives = 115/229 (50%)

Query:   781 ANMEGKSGEPLNFDRLLMK-VKATCPPAGQ---RYLSPQQV----SEIVEKQLAAYGKES 832
             +N   + G  LN+ + +   VKA     G    R L   Q+     E+ E+    Y K++
Sbjct:  1092 SNALQRKGAFLNYSQKIQAAVKALNLEDGNQNGRSLGTHQILKMWGELDEQSRRKYQKKA 1151

Query:   833 --CSEAFLNSLRK--FFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEV 888
               C +  L   R   +F    +  +KK   V+D   +  +Q   E ++K S ++  +L  
Sbjct:  1152 APCPDPSLAVWRPDIYFASVSETFEKK---VDDYSLEWAAQA--EKSYKKSELSLDRLRT 1206

Query:   889 FIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEI 948
              +Q  + R      + G A+G + AQSIGEP TQMTL TFHFAG   MN+T G+PR++EI
Sbjct:  1207 LLQLKWQR---SLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREI 1263

Query:   949 INGAK-RISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKI 994
             +  A   I TP+++  +  N  +   RV  +K ++ +  LG+V + I +
Sbjct:  1264 LMVASANIKTPMMSVPV-FNTKKALKRVKSLKKQLTRVCLGEVLEKIDV 1311

 Score = 195 (73.7 bits), Expect = 7.7e-113, Sum P(4) = 7.7e-113
 Identities = 48/141 (34%), Positives = 75/141 (53%)

Query:  1108 LLVEGTGLQAVMG-AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  EG  L  +   AE +D  +  SN I  +  T GIEAA   I  EI +    +G+++D
Sbjct:  1604 LNTEGINLPELFKYAEVLDLSRLYSNDIHAMASTYGIEAALRVIEKEIRDVFAVYGIAVD 1663

Query:  1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
              RH+ L+AD M F G    + RFGI+  + S L   +FE +   L  A++ G  D +   
Sbjct:  1664 PRHLSLVADYMCFEGVYKPLNRFGIRS-NSSPLQQMTFETSFQFLKQATMMGSHDELRSP 1722

Query:  1227 SECIIMGIPMPLGTGILKIRQ 1247
             S C+++G  +  GTG+ +++Q
Sbjct:  1723 SACLVVGKVVKGGTGLFELKQ 1743

 Score = 55 (24.4 bits), Expect = 3.8e-57, Sum P(5) = 3.8e-57
 Identities = 40/173 (23%), Positives = 68/173 (39%)

Query:   230 RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-RYP 288
             R+ +S  P   +T+    I + R+ ++   V D  ++KL        +KYPG R I    
Sbjct:   384 RSFLSMLPGQSLTDKLYNIWI-RLQSHVNIVFDSEMDKLMM------EKYPGIRQILEKK 436

Query:   289 DGTARV-LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
             DG  R  + GK R   A   +S    D ++   ++ +    P +    +  +   + PW 
Sbjct:   437 DGLFRKHMMGK-RVDYAA--RSVICPDMYINTNEIGI----PMVFATKLT-YPQPVTPWN 488

Query:   348 TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM--GVQNNLCTPKNG 398
                  ++V N  N    G  M ++   +  A +   L     V   L TP  G
Sbjct:   489 VQELRQAVINGPNVH-PGASMVINEDGSRTALSAIDLTQREAVAKQLLTPATG 540

 Score = 45 (20.9 bits), Expect = 3.8e-57, Sum P(5) = 3.8e-57
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query:   216 FRGNLSGKRVEY--TGRTVISPDPNLKITEVAIP 247
             ++ +++ KR  +  TGR+V+  + N K+T V  P
Sbjct:   198 WKAHMTAKRCPHCKTGRSVVRKEHNSKLT-VTYP 230

 Score = 45 (20.9 bits), Expect = 3.7e-26, Sum P(4) = 3.7e-26
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query:   726 REGLVDTAV-KTADTGYMSRRLIKALEDLSIQ 756
             RE L  TA+ K  DTG+    L   LED+ ++
Sbjct:   272 REHL--TALWKNEDTGFFLNYLFSGLEDVDME 301

 Score = 38 (18.4 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query:   283 RMIRYPDGTARVLYGKFRN-QLAVELKSGCIVDRHLEDGD 321
             R+ +  + T  + + K +  Q   E + G IVD   E+GD
Sbjct:  1399 RLSQARENTGSLAFLKSQGEQEGNEEEEGPIVDAEAEEGD 1438

 Score = 38 (18.4 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query:   790 PLNFDRLLMKVKATC 804
             PL FD+L + ++ +C
Sbjct:    90 PLLFDKLYLLLRGSC 104

 Score = 37 (18.1 bits), Expect = 1.5e-55, Sum P(4) = 1.5e-55
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query:   525 TLGNGNKDGLYSVLL 539
             +LGN + +GLY + L
Sbjct:    41 SLGNPSANGLYDLAL 55

 Score = 37 (18.1 bits), Expect = 9.9e-26, Sum P(3) = 9.9e-26
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query:    25 MASKAVKCPRCGYINGMVKKAVAVLGIIHD 54
             +   AVK  R GY+   + K +  L + +D
Sbjct:   987 LVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1016


>UNIPROTKB|E1BIX2 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase" species:9913
            "Bos taurus" [GO:0005736 "DNA-directed RNA polymerase I complex"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
            KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11 CTD:25885
            GeneTree:ENSGT00550000074861 EMBL:DAAA02031123 IPI:IPI00714586
            RefSeq:NP_001179805.1 UniGene:Bt.52712 PRIDE:E1BIX2
            Ensembl:ENSBTAT00000008496 GeneID:536316 KEGG:bta:536316
            NextBio:20876927 Uniprot:E1BIX2
        Length = 1717

 Score = 568 (205.0 bits), Expect = 2.4e-112, Sum P(4) = 2.4e-112
 Identities = 143/405 (35%), Positives = 216/405 (53%)

Query:   204 GFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDH 263
             G  Q L+ K G FR ++ GKRV+Y  R+VI PD  +   E+ IP+  A  LTYP+ V+  
Sbjct:   416 GIRQILEKKDGLFRKHMMGKRVDYAARSVICPDMYISTNEIGIPMVFATKLTYPQPVTPW 475

Query:   264 NIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF---RNQLAVEL---KSGC------ 311
             N+++LRQ + NGP+ +PGA M+   DG+   L       R  +A +L    +G       
Sbjct:   476 NVQELRQAVINGPNMHPGASMVINEDGSRTALSASDLTQREAVAKQLLTPATGAPKPQGT 535

Query:   312 -IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMN 369
              IV RH+++GD++L NRQP+LHR SI  HRAR++P  + LR + + C  YNADFDGDEMN
Sbjct:   536 KIVCRHVKNGDILLLNRQPTLHRPSIQAHRARVLPEEKVLRLHYANCKAYNADFDGDEMN 595

Query:   370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF-S 428
              H PQ+E  R EA +L         PK+G+ L    QD + S   +T +  F++R  +  
Sbjct:   596 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFNREQYME 655

Query:   429 LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFS-VLIRPHANMRVYVNLTVKEKTYSNK 487
             L+   + D + RV L  PAILKP  LWTGKQ+ S +LI       + +NL+ K K     
Sbjct:   656 LVFRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKIGGKA 715

Query:   488 LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
              ++               +  V  R  EL+ G L KA  G+ +  GL       YG   +
Sbjct:   716 WVKESPRLVPGFNPDSMCESQVIIRAGELLCGVLDKAHYGS-SAYGLVHCCYEIYGGETS 774

Query:   548 SGCMNRLAKLSARWIGNH-GFSIGIDDVQPKKELSDKKGKLISEN 591
                +  LA+L   ++  + GF++G++D+  K +   ++  +I ++
Sbjct:   775 GRVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVRRHGIIEDS 819

 Score = 335 (123.0 bits), Expect = 2.4e-112, Sum P(4) = 2.4e-112
 Identities = 74/158 (46%), Positives = 97/158 (61%)

Query:   627 LNRIREDAGKACM--G---SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
             +N    +  KACM  G     P  N+  +M Q G+KGS +N  Q+   +GQ  + GRR P
Sbjct:   869 VNHYSNEINKACMPFGLHRQFP-ENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPP 927

Query:   682 NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
                  +SLP F      P A GFV   F +G+   EFFFH M GREGLVDTAVKT+ +GY
Sbjct:   928 LMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGY 987

Query:   742 MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
             + R +IK LE L +QYD +VR++ G +VQFLYG+DG+D
Sbjct:   988 LQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1025

 Score = 213 (80.0 bits), Expect = 2.4e-112, Sum P(4) = 2.4e-112
 Identities = 59/190 (31%), Positives = 103/190 (54%)

Query:   818 SEIVEKQLAAYGKES--CSEAFLNSLRK--FFEGQQDKLDKKIKFVEDIGWDDKSQILEE 873
             +E+ E+    Y K++  C +  L+  R   +F    +  +KK+   +D   +  +Q   E
Sbjct:  1125 AELDEQSRRKYQKKAAPCPDPSLSVWRPDIYFASVSETFEKKM---DDYSCEWAAQA--E 1179

Query:   874 VTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGV 933
              +++ SG++   L   +Q  + R      + G A+G + AQSIGEP TQMTL TFHFAG 
Sbjct:  1180 RSYEKSGLSLDSLRTLLQLKWQR---SLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGR 1236

Query:   934 ASMNITQGVPRIKEIINGAK-RISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAK 990
               MN+T G+PR++EI+  A   I TP+++  +  N  +   +V  +K ++ +  LG+V +
Sbjct:  1237 GEMNVTLGIPRLREILMVASSNIKTPMMSVPV-FNTKKALKKVKSLKKQLTRVCLGEVLE 1295

Query:   991 SIKIVMTSRL 1000
              I +  + R+
Sbjct:  1296 KIDVQESFRI 1305

 Score = 193 (73.0 bits), Expect = 2.4e-112, Sum P(4) = 2.4e-112
 Identities = 48/141 (34%), Positives = 75/141 (53%)

Query:  1108 LLVEGTGLQAVMG-AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  EG  L  +   AE +D  +  SN I  +  T GIEAA   I  EI +    +G+++D
Sbjct:  1575 LNTEGINLPELFKYAEVLDLRRLYSNDIHAMASTYGIEAALRVIEKEIKDVFAVYGIAVD 1634

Query:  1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
              RH+ L+AD M F G    + RFGI+  + S L   +FE +   L  A++ G  D +   
Sbjct:  1635 PRHLSLVADYMCFEGVYKPLNRFGIRS-NSSPLQQMTFETSFQFLKQATLMGSHDELRSP 1693

Query:  1227 SECIIMGIPMPLGTGILKIRQ 1247
             S C+++G  +  GTG+ +++Q
Sbjct:  1694 SACLVVGKVVKGGTGLFELKQ 1714

 Score = 56 (24.8 bits), Expect = 1.8e-57, Sum P(4) = 1.8e-57
 Identities = 40/173 (23%), Positives = 69/173 (39%)

Query:   230 RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-RYP 288
             R+ +S  P   +T+    I + R+ ++   V D  ++KL        +KYPG R I    
Sbjct:   372 RSFLSQLPGQSLTDRLYNIWI-RLQSHVNIVFDSEMDKLMM------EKYPGIRQILEKK 424

Query:   289 DGTARV-LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
             DG  R  + GK R   A   +S    D ++   ++ +    P +    +  +   + PW 
Sbjct:   425 DGLFRKHMMGK-RVDYAA--RSVICPDMYISTNEIGI----PMVFATKLT-YPQPVTPWN 476

Query:   348 TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM--GVQNNLCTPKNG 398
                  ++V N  N    G  M ++   +  A + + L     V   L TP  G
Sbjct:   477 VQELRQAVINGPNMH-PGASMVINEDGSRTALSASDLTQREAVAKQLLTPATG 528

 Score = 44 (20.5 bits), Expect = 3.6e-26, Sum P(3) = 3.6e-26
 Identities = 12/58 (20%), Positives = 25/58 (43%)

Query:   747 IKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATC 804
             +  L DL++   +S      C+  F      +   ++      PL FD+L + ++ +C
Sbjct:    47 VNGLYDLALGPADSKEVCSTCVQDFTNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSC 104

 Score = 43 (20.2 bits), Expect = 4.0e-56, Sum P(4) = 4.0e-56
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query:   219 NLSGKRVEY--TGRTVISPDPNLKITEVAIPIRMAR 252
             +++ KR  +  TGR+V+  + N K+T +  P  + R
Sbjct:   199 HMTAKRCPHCKTGRSVVRKEHNSKLT-ITYPAMVHR 233

 Score = 41 (19.5 bits), Expect = 1.5e-81, Sum P(4) = 1.5e-81
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query:   567 FSIGIDDVQ-PKKE-LSDKKGKLISENYEVCNVKIKEYNE 604
             F  G D +  PK + L  K+   ++ NYEV  +K K  +E
Sbjct:  1017 FLYGEDGLDIPKTQFLQPKQFPFLTSNYEVI-MKSKHLHE 1055

 Score = 37 (18.1 bits), Expect = 1.2e-24, Sum P(4) = 1.2e-24
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query:    25 MASKAVKCPRCGYINGMVKKAVAVLGIIHD 54
             +   AVK  R GY+   + K +  L + +D
Sbjct:   975 LVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004

 Score = 37 (18.1 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query:   306 ELKSGCIVDRHLEDGD 321
             E + G IVD   E+GD
Sbjct:  1394 EEEEGHIVDAEAEEGD 1409


>SGD|S000005868 [details] [associations]
            symbol:RPA190 "RNA polymerase I largest subunit A190"
            species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
            evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
            [GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA;IDA] [GO:0005736 "DNA-directed RNA
            polymerase I complex" evidence=IDA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;IMP;IDA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0042790 "transcription of nuclear large rRNA transcript from
            RNA polymerase I promoter" evidence=IGI;IMP] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 SGD:S000005868 EMBL:BK006948 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
            EMBL:X95720 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790
            eggNOG:COG0086 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
            HOGENOM:HOG000205401 GeneTree:ENSGT00550000074861 OrthoDB:EOG432464
            EMBL:J03530 EMBL:Z75249 PIR:S67250 RefSeq:NP_014986.3
            RefSeq:NP_620389.3 ProteinModelPortal:P10964 SMR:P10964
            DIP:DIP-999N IntAct:P10964 MINT:MINT-613626 STRING:P10964
            PaxDb:P10964 PeptideAtlas:P10964 EnsemblFungi:YOR341W GeneID:854519
            GeneID:854523 KEGG:sce:YOR341W KEGG:sce:YOR343W-B CYGD:YOR341w
            NextBio:976888 Genevestigator:P10964 GermOnline:YOR341W
            Uniprot:P10964
        Length = 1664

 Score = 542 (195.9 bits), Expect = 5.0e-111, Sum P(3) = 5.0e-111
 Identities = 158/487 (32%), Positives = 249/487 (51%)

Query:   120 IAVPPIAIR-PSVIMDGSQSNENDITERLKRIIQTN----------ASLQQELVEANSA- 167
             + VPP   R PS +  G + +EN   + L +++ T+          + LQ++ V      
Sbjct:   360 LVVPPTRFRLPSKL--GEEVHENSQNQLLSKVLTTSLLIRDLNDDLSKLQKDKVSLEDRR 417

Query:   168 --FKSLAG-WETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKR 224
               F  L   + T+Q +V  +I+S       S +V  P+ G  Q L+ K+G FR ++ GKR
Sbjct:   418 VIFSRLMNAFVTIQNDVNAFIDSTKAQGRTSGKV--PIPGVKQALEKKEGLFRKHMMGKR 475

Query:   225 VEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARM 284
             V Y  R+VISPDPN++  E+ +P   A  LTYPE V+ +NI +LRQ + NGPDK+PGA  
Sbjct:   476 VNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQ 535

Query:   285 IRYPDGTARVLYG---KFRNQLAVEL--KSGCI--------VDRHLEDGDVVLFNRQPSL 331
             I+  DG+   L G   + R  LA +L   S  +        V RH+++ DVVL NRQP+L
Sbjct:   536 IQNEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKVYRHIKNRDVVLMNRQPTL 595

Query:   332 HRMSIMCHRARIMP-WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQN 390
             H+ S+M H+ R++P  +TLR + +    YNADFDGDEMNMH PQ E AR EAL L    +
Sbjct:   596 HKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDS 655

Query:   391 NLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLPTPAI 448
                TP +G  +    QD +++   +T KD+F+ R  +   +  C   +  D     +  +
Sbjct:   656 QYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPE--DGHTTRSKIV 713

Query:   449 LKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGF 508
               P  ++    L++          V +N+T  +    N + + +   E   +    N+  
Sbjct:   714 TLPPTIFKPYPLWT---GKQIITTVLLNVTPPDMPGINLISKNKIKNEYWGKGSLENE-- 768

Query:   509 VYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFS 568
             V F++  L+ G L K+  G  +K G+   L   YG    +  ++ L +L   +I    F+
Sbjct:   769 VLFKDGALLCGILDKSQYG-ASKYGIVHSLHEVYGPEVAAKVLSVLGRLFTNYITATAFT 827

Query:   569 IGIDDVQ 575
              G+DD++
Sbjct:   828 CGMDDLR 834

 Score = 522 (188.8 bits), Expect = 5.0e-111, Sum P(3) = 5.0e-111
 Identities = 134/394 (34%), Positives = 207/394 (52%)

Query:   619 LEAVITDILNRIREDAGKACM--GSL---PWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
             L+AV +  +N I       C+  G++   P  NS   M+  G+KGS +N+SQ++  +GQQ
Sbjct:   892 LDAVTSSKVNAITSQVVSKCVPDGTMKKFPC-NSMQAMALSGAKGSNVNVSQIMCLLGQQ 950

Query:   674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
             ++ GRR P     ++LP F     +  A G+V   FYSG+   E++FH M GREGL+DTA
Sbjct:   951 ALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQEYYFHCMAGREGLIDTA 1010

Query:   734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
             VKT+ +GY+ R L K LE + + YDNS+R+A G +VQF+YG D +D       +      
Sbjct:  1011 VKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGGDAIDITKESHMTQFEFCL 1070

Query:   794 DRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLD 853
             D     +K   P A   +L  +   +  +K L    K S    +  S++  ++    K +
Sbjct:  1071 DNYYALLKKYNPSALIEHLDVESALKYSKKTLKYRKKHSKEPHYKQSVK--YDPVLAKYN 1128

Query:   854 KKIKFVEDIG--WDDKSQILEEVTHK----TSGITEKQLEVFIQTCFSRYRVKRVEAGTA 907
                K++  +   + DK +   +   K    + G+ EK+    +Q    +Y    +  G A
Sbjct:  1129 PA-KYLGSVSENFQDKLESFLDKNSKLFKSSDGVNEKKFRALMQL---KYMRSLINPGEA 1184

Query:   908 IGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR-ISTPIITAELEC 966
             +G I +QS+GEP TQMTL TFHFAG  + N+T G+PR++EI+  A   I TP +T  +  
Sbjct:  1185 VGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTLPI-W 1243

Query:   967 ND--NENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
             ND  +E A    K  I K LL +V   + +  T+
Sbjct:  1244 NDVSDEQADTFCKS-ISKVLLSEVIDKVIVTETT 1276

 Score = 184 (69.8 bits), Expect = 5.0e-111, Sum P(3) = 5.0e-111
 Identities = 45/135 (33%), Positives = 73/135 (54%)

Query:  1108 LLVEGTGLQAVMGAEG-IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L+ EG   QA+   E  ID     SN +  V +T G+EAAR  I++EIN     + +S+ 
Sbjct:  1519 LVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVS 1578

Query:  1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
              RH+ L+AD+MT +G  L   R G++    S + + S+E T   L  A ++   ++++  
Sbjct:  1579 FRHLDLIADMMTRQGTYLAFNRQGMETSTSSFMKM-SYETTCQFLTKAVLDNEREQLDSP 1637

Query:  1227 SECIIMGIPMPLGTG 1241
             S  I++G    +GTG
Sbjct:  1638 SARIVVGKLNNVGTG 1652

 Score = 46 (21.3 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query:    29 AVKCPRCGYINGMVKKAVAVLGIIHDRS--KVTESLQEF---ASAITHTKES 75
             AVK  R GY+   + K +  + + +D S      +L +F     AI  TKES
Sbjct:  1010 AVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGGDAIDITKES 1061

 Score = 42 (19.8 bits), Expect = 1.2e-60, Sum P(3) = 1.2e-60
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query:   839 NSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFI 890
             N++ K    +Q  +    +F+    +DD+S    E   + +  TEK L V I
Sbjct:  1437 NNMNKVQRDRQSAIISHHRFITKYNFDDESGKWCEFKLELAADTEKLLMVNI 1488

 Score = 39 (18.8 bits), Expect = 4.0e-58, Sum P(3) = 4.0e-58
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query:   299 FRNQLAVELKSGCIVDRH 316
             F NQL + L++ C+   H
Sbjct:    90 FFNQLYIYLRASCLFCHH 107

 Score = 37 (18.1 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
 Identities = 29/103 (28%), Positives = 45/103 (43%)

Query:   790 PLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEK-QLAAYG--KES--CSEAFLNSLR-- 842
             PL F++L + ++A+C       L   +V     K +L  YG   ES    E  L SL   
Sbjct:    88 PLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGLIDESYKLDEITLGSLNSS 147

Query:   843 -----KFFEGQQDKLDKK-IKFVEDIGWDDKSQILEEVTHKTS 879
                  +  E  +D++D +  K  +DI     S +L E+  K S
Sbjct:   148 MYTDDEAIEDNEDEMDGEGSKQSKDIS----STLLNELKSKRS 186


>RGD|1305574 [details] [associations]
            symbol:Polr3a "polymerase (RNA) III (DNA directed) polypeptide
            A" species:10116 "Rattus norvegicus" [GO:0003682 "chromatin
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0032728 "positive regulation of interferon-beta production"
            evidence=ISO] [GO:0045087 "innate immune response" evidence=ISO]
            [GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR007081
            InterPro:IPR015700 Pfam:PF04998 RGD:1305574 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
            eggNOG:COG0086 GO:GO:0032549 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
            PANTHER:PTHR19376:SF15 IPI:IPI00766228 EMBL:BC086344
            UniGene:Rn.41904 ProteinModelPortal:Q5RK26 STRING:Q5RK26
            UCSC:RGD:1305574 Genevestigator:Q5RK26 Uniprot:Q5RK26
        Length = 491

 Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
 Identities = 234/487 (48%), Positives = 319/487 (65%)

Query:   771 FLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGK 830
             F+YG DG+DPA MEGK  EPL F R+L  +KA  P   +R LS  +++   E  +     
Sbjct:     1 FIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVYPCQSERALSKNELTLTTEAIMKKNEF 59

Query:   831 ESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFI 890
               C ++FL  ++ F +G  +K+ KK +  +  G +D       V ++   IT  Q+E F+
Sbjct:    60 LCCQDSFLQEIKTFIKGVSEKI-KKTR--DKYGINDNGTTEPRVLYQLDRITRTQIEKFL 116

Query:   891 QTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN 950
             +TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GVPRIKEIIN
Sbjct:   117 ETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN 176

Query:   951 GAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDME 1010
              +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       I++ L +E
Sbjct:   177 ASKAISTPIITAQLDMDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLE 236

Query:  1011 TIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIHFELYSLKN 1069
              I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS +++ L  LK 
Sbjct:   237 RIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKE 295

Query:  1070 VLPMVIVKGIKTXXXXXXXXXXXXXXXXXXXXXXXXYRLLVEGTGLQAVMGAEGIDGCKT 1129
              LP V+V+GI                          ++LLVEG  L+AVM   G+ G +T
Sbjct:   296 DLPKVVVQGIPEVSRAVIHIDEQSGKEK--------FKLLVEGDNLRAVMATHGVKGTRT 347

Query:  1130 KSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRF 1189
              SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++GEVLGITRF
Sbjct:   348 TSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRF 407

Query:  1190 GIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI---R 1246
             G+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG+ K+    
Sbjct:   408 GLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKA 467

Query:  1247 QRDAVPP 1253
              RD  PP
Sbjct:   468 NRDPKPP 474


>TAIR|locus:2076661 [details] [associations]
            symbol:NRPA1 "nuclear RNA polymerase A1" species:3702
            "Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005829 "cytosol"
            evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0006354
            "DNA-dependent transcription, elongation" evidence=RCA] [GO:0006406
            "mRNA export from nucleus" evidence=RCA] [GO:0006606 "protein
            import into nucleus" evidence=RCA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0009506 GO:GO:0005634 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            EMBL:AL049660 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            eggNOG:COG0086 HSSP:P04050 KO:K02999 OMA:CLLNETT
            PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 IPI:IPI00546513
            PIR:T06754 RefSeq:NP_191325.1 UniGene:At.50286
            ProteinModelPortal:Q9SVY0 SMR:Q9SVY0 IntAct:Q9SVY0 STRING:Q9SVY0
            PaxDb:Q9SVY0 PRIDE:Q9SVY0 EnsemblPlants:AT3G57660.1 GeneID:824935
            KEGG:ath:AT3G57660 TAIR:At3g57660 InParanoid:Q9SVY0
            PhylomeDB:Q9SVY0 ProtClustDB:CLSN2684581 Genevestigator:Q9SVY0
            Uniprot:Q9SVY0
        Length = 1670

 Score = 342 (125.4 bits), Expect = 2.7e-105, Sum P(5) = 2.7e-105
 Identities = 81/216 (37%), Positives = 119/216 (55%)

Query:   614 DAAQTLEAVITDILNRIREDAGKACMGSL--------PWRNSPLIMSQCGSKGSPINISQ 665
             D    L ++   I+N + + + K  M  L        P RN   +M+  G+KGS +N  Q
Sbjct:   896 DGESALASLDRSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQQ 955

Query:   666 MVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGG 725
             + + +GQQ + G+R P     ++LP F      P A GF+++ F SGL   E++FH M G
Sbjct:   956 ISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAG 1015

Query:   726 REGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDP--ANM 783
             REGLVDTAVKT+ +GY+ R L+K LE L + YD +VR+A G I+QF YG+DG+D   ++ 
Sbjct:  1016 REGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRSSF 1075

Query:   784 EGKSGE-PLNFDRLLMKVKATCPPAGQRYLSPQQVS 818
               K  E  +N D +L K           Y+S   +S
Sbjct:  1076 IEKFKELTINQDMVLQKCSEDMLSGASSYISDLPIS 1111

 Score = 311 (114.5 bits), Expect = 2.7e-105, Sum P(5) = 2.7e-105
 Identities = 59/120 (49%), Positives = 81/120 (67%)

Query:   310 GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEM 368
             G  V RH+ DGD+VL NRQP+LH+ S+M H+ R++   +TLR + + C+ YNADFDGDEM
Sbjct:   549 GKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEM 608

Query:   369 NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 428
             N+H PQ E +R EA  ++   N    P NGE L A  QD + SS L+T++DTF D+  F+
Sbjct:   609 NVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFN 668

 Score = 259 (96.2 bits), Expect = 2.7e-105, Sum P(5) = 2.7e-105
 Identities = 63/166 (37%), Positives = 86/166 (51%)

Query:   117 ITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWET 176
             + ++ VPP   RP     G    E+  T  L ++I++N  L           K +  W  
Sbjct:   343 LESVLVPPTKFRPPTT-GGDSVMEHPQTVGLNKVIESNNILGNACTNKLDQSKVIFRWRN 401

Query:   177 LQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPD 236
             LQ  V    +S    V    Q  R  SG  Q L+ K+G FR  + GKRV +  R+VISPD
Sbjct:   402 LQESVNVLFDSKTATV----QSQRDSSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPD 457

Query:   237 PNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
             P + + ++ IP   A  LTYPERV+  N+EKLR+ I NGPD +PGA
Sbjct:   458 PYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGA 503

 Score = 208 (78.3 bits), Expect = 2.7e-105, Sum P(5) = 2.7e-105
 Identities = 66/229 (28%), Positives = 110/229 (48%)

Query:   831 ESCSEAFLNSLRKFFEGQQDKLDKKI-KFVEDIGWDDKSQILEEVTHKTSGITEKQLEVF 889
             + CSE  L+    +       L K   KFVE +  +      E +  K   + +++L   
Sbjct:  1091 QKCSEDMLSGASSYISDLPISLKKGAEKFVEAMPMN------ERIASKF--VRQEELLKL 1142

Query:   890 IQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII 949
             ++   S++     + G  +G + AQS+GEP TQMTL TFH AG   MN+T G+PR++EI+
Sbjct:  1143 VK---SKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1199

Query:   950 -NGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKI------VMTSRLAS 1002
                A  I TPI+T  L     +  A  +  R+ K  +  + KS+++      V  + + S
Sbjct:  1200 MTAAANIKTPIMTCPLLKGKTKEDANDITDRLRKITVADIIKSMELSVVPYTVYENEVCS 1259

Query:  1003 IVIALDMETIQDAHLCINADIVKESIVQTPKI----KLK---QQHIKVL 1044
             I   L +   +  H   + DI +E   +T +     KL+   + H+K+L
Sbjct:  1260 IH-KLKINLYKPEHYPKHTDITEEDWEETMRAVFLRKLEDAIETHMKML 1307

 Score = 183 (69.5 bits), Expect = 2.7e-105, Sum P(5) = 2.7e-105
 Identities = 43/118 (36%), Positives = 61/118 (51%)

Query:  1131 SNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFG 1190
             SN I ++    G+EAAR  II EIN   K++G+S+  RH+ L+AD MTF G    ++R G
Sbjct:  1550 SNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMG 1609

Query:  1191 IQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
                   S     +FE     +  A+  G  D +E  S  I +G+P   GTG   + QR
Sbjct:  1610 GIAESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDLMQR 1667

 Score = 161 (61.7 bits), Expect = 3.0e-86, Sum P(5) = 3.0e-86
 Identities = 59/227 (25%), Positives = 107/227 (47%)

Query:   445 TPAILKPVELWTGKQLFSVLIR------PHANMRVYVNLTVKE-KTYSNKLIRTEGD--E 495
             TPAILKPV LWTGKQ+ + ++       P   +     L V   K  S ++    GD  +
Sbjct:   705 TPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLTK 764

Query:   496 EIRIETMCP---NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
             +  I+       N+  ++ R +E + G + KA   +    GL   +   YG++A    ++
Sbjct:   765 KKEIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFADY---GLVHTVHELYGSNAAGNLLS 821

Query:   553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
               ++L   ++  HGF+ G+DD+   K++ +++ K + E    C    +   E  L+   G
Sbjct:   822 VFSRLFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQE----C----ENVGERVLRKTFG 873

Query:   613 CDAAQTLEAV-ITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKG 658
              D    ++   +   + RI  + G++ + SL  R+    ++QC SKG
Sbjct:   874 IDVDVQIDPQDMRSRIERILYEDGESALASLD-RSIVNYLNQCSSKG 919

 Score = 54 (24.1 bits), Expect = 1.6e-56, Sum P(4) = 1.6e-56
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query:   342 RIMPWRTLRFNESVCN-----PYNADFDGDEMNMHVPQTEEAR 379
             R+ PW   +  E++ N     P    +      M +P TE+AR
Sbjct:   480 RVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTEKAR 522

 Score = 50 (22.7 bits), Expect = 9.5e-08, Sum P(4) = 9.5e-08
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query:   111 RPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQEL 161
             R +++++T  A     I    ++ G ++ + NDIT+RL++I   +     EL
Sbjct:  1194 RLQEILMTAAANIKTPIMTCPLLKGKTKEDANDITDRLRKITVADIIKSMEL 1245

 Score = 44 (20.5 bits), Expect = 3.6e-69, Sum P(5) = 3.6e-69
 Identities = 21/107 (19%), Positives = 45/107 (42%)

Query:   775 DDGMDPANMEGKSGEPLNFDRLLMKV-KATCPPAGQRYLSPQQVSEIVEKQLAAYGKESC 833
             D+  +P+++ G     ++ +    +V K   P   +  + PQ+  + V+       K+  
Sbjct:  1376 DETNEPSSISGVEDPEMDSENEDTEVSKEDTPEPQEESMEPQKEVKGVKNVKEQSKKKRR 1435

Query:   834 SEAFLNSLRKFF-EGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTS 879
                   S R  F +G+ +K +   KF  D    D   +L ++  +T+
Sbjct:  1436 KFVRAKSDRHIFVKGEGEKFEVHFKFATD----DPHILLAQIAQQTA 1478

 Score = 39 (18.8 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query:    25 MASKAVKCPRCGYINGMVKKAVAVLGIIHD 54
             +   AVK  R GY+   + K +  L + +D
Sbjct:  1019 LVDTAVKTSRSGYLQRCLMKNLESLKVNYD 1048


>FB|FBgn0019938 [details] [associations]
            symbol:RpI1 "RNA polymerase I subunit" species:7227
            "Drosophila melanogaster" [GO:0006360 "transcription from RNA
            polymerase I promoter" evidence=ISS;NAS] [GO:0005736 "DNA-directed
            RNA polymerase I complex" evidence=ISS] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
            evidence=NAS] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 EMBL:AE013599 GO:GO:0005730 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K02999
            PANTHER:PTHR19376:SF11 EMBL:Y09103 EMBL:AY121632 PIR:T13803
            RefSeq:NP_523743.1 UniGene:Dm.8031 ProteinModelPortal:P91875
            SMR:P91875 MINT:MINT-1742038 STRING:P91875 PaxDb:P91875
            GeneID:36617 KEGG:dme:Dmel_CG10122 CTD:36617 FlyBase:FBgn0019938
            InParanoid:P91875 OrthoDB:EOG466T1R GenomeRNAi:36617 NextBio:799515
            Bgee:P91875 GermOnline:CG10122 Uniprot:P91875
        Length = 1642

 Score = 565 (203.9 bits), Expect = 7.1e-104, Sum P(6) = 7.1e-104
 Identities = 180/545 (33%), Positives = 270/545 (49%)

Query:   123 PPIAIRPSVIMDGSQSNENDITERLKRIIQTNASL----------QQELVE-ANSAFKSL 171
             PP A RP + M G     N  T+    II+ N  L          Q++L E A +A+++L
Sbjct:   304 PPRA-RP-LNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTEEAKAAYQTL 361

Query:   172 AGWETLQVEV-----AQYINSDVR-GVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRV 225
              G ET   ++     A  ++ DV   V  S ++ +   G  Q ++ K G  R ++ GKRV
Sbjct:   362 KG-ETAHEKLYTAWLALQMSVDVLLDVNMSREM-KSGEGLKQIIEKKSGLIRSHMMGKRV 419

Query:   226 EYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI 285
              Y  RTVI+PDPN+ + E+ IP   A+ L+YP  V++ N+ +LR+ + NGPD +PGA  I
Sbjct:   420 NYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYI 479

Query:   286 RYPDGTARVL---YGKFRNQLAVEL----KSGC-IVDRHLEDGDVVLFNRQPSLHRMSIM 337
             +  +G    +       R  LA  L    K G  IV RH+ +GDV+L NRQPSLH+ SIM
Sbjct:   480 QDKNGFTTYIPADNASKRESLAKLLLSNPKDGIKIVHRHVLNGDVLLLNRQPSLHKPSIM 539

Query:   338 CHRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPK 396
              H+ARI+   +T R + S C  YNADFDGDEMN H PQ+E AR EA  L+ V +N   PK
Sbjct:   540 GHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPK 599

Query:   397 NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPT--PAILKPVEL 454
             +G  L    QD + S   ++ +  F++R  +  +  + G    + D+    P ILKP  L
Sbjct:   600 DGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLV-FQGLSQLKKDIKLLPPTILKPAVL 658

Query:   455 WTGKQLFSVLIR---PHANMRVYVNLTVKEKTYSNKLIRTEGDE-EIRIETMCPNDGFVY 510
             W+GKQ+ S +I    P    R+ ++   K    +  + R          E    ++  V 
Sbjct:   659 WSGKQILSTIIINIIPEGYERINLDSFAKIAGKNWNVSRPRPPICGTNPEGNDLSESQVQ 718

Query:   511 FRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIG 570
              RN EL+ G L K   G     GL   +   YG   ++  +    K+   ++   GF++G
Sbjct:   719 IRNGELLVGVLDKQQYG-ATTYGLIHCMYELYGGDVSTLLLTAFTKVFTFFLQLEGFTLG 777

Query:   571 IDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA-AQTLEAV-ITDILN 628
             + D+        K+ K+I E   V N  +    E  L+ +P  D   + +EA  + D   
Sbjct:   778 VKDILVTDVADRKRRKIIRECRNVGNSAVAAALE--LEDEPPHDELVEKMEAAYVKDSKF 835

Query:   629 RIRED 633
             R+  D
Sbjct:   836 RVLLD 840

 Score = 311 (114.5 bits), Expect = 7.1e-104, Sum P(6) = 7.1e-104
 Identities = 71/190 (37%), Positives = 110/190 (57%)

Query:   646 NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFV 705
             N+  +M   G+KGS +N  Q+   +GQ  + G+R P     +SLP F      P + GF+
Sbjct:   870 NNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFI 929

Query:   706 ANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAG 765
                F +G+   +FFFH M GREGL+DTAVKT+ +GY+ R LIK LE LS+ YD +VR++ 
Sbjct:   930 DGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSD 989

Query:   766 GCIVQFLYGDDGMDPANMEGKS-GEPLNFDRLLMKVKATCPPAGQRYLSPQ-QVSEIV-- 821
               +VQFLYG+DG+D   ++ K   +    D L     A   PA  + +  + Q++++   
Sbjct:   990 NSVVQFLYGEDGLDI--LKSKFFNDKFCADFLTQNATAILRPAQLQLMKDEEQLAKVQRH 1047

Query:   822 EKQLAAYGKE 831
             EK + ++ K+
Sbjct:  1048 EKHIRSWEKK 1057

 Score = 192 (72.6 bits), Expect = 7.1e-104, Sum P(6) = 7.1e-104
 Identities = 41/115 (35%), Positives = 68/115 (59%)

Query:  1131 SNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFG 1190
             SN I  + +T GIEAA   I+ E++   K +G+++D+RH+ L+AD MTF G    ++R G
Sbjct:  1524 SNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKG 1583

Query:  1191 IQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             ++    S L   SFE +   L +A+  GR D +   S  +++G+P+  GTG  ++
Sbjct:  1584 MEH-SSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFEL 1637

 Score = 173 (66.0 bits), Expect = 7.1e-104, Sum P(6) = 7.1e-104
 Identities = 41/110 (37%), Positives = 59/110 (53%)

Query:   871 LEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEA----GTAIGAIGAQSIGEPGTQMTLK 926
             + E T K      K+     +T     RVK +++    G  +G I AQSIGEP TQMTL 
Sbjct:  1137 VSERTRKLITDYAKRKPALKETIADIMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLN 1196

Query:   927 TFHFAGVASMNITQGVPRIKEIIN-GAKRISTPIITAELECNDNENAARV 975
             TFHFAG   MN+T G+PR++EI+   +  I TP +   ++      A ++
Sbjct:  1197 TFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIKPGQQHQAEKL 1246

 Score = 43 (20.2 bits), Expect = 4.3e-76, Sum P(6) = 4.3e-76
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query:   819 EIVEKQLAAYGKESCSEAFLNSLRKF 844
             E+VEK  AAY K+S     L+  RK+
Sbjct:   820 ELVEKMEAAYVKDSKFRVLLD--RKY 843

 Score = 41 (19.5 bits), Expect = 3.9e-48, Sum P(5) = 3.9e-48
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query:   122 VPPIAIRPSVIMDGSQ 137
             +PP  ++P+V+  G Q
Sbjct:   648 LPPTILKPAVLWSGKQ 663

 Score = 41 (19.5 bits), Expect = 8.7e-20, Sum P(5) = 8.7e-20
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query:   838 LNSLRKFFEGQQDKLDKKIK 857
             LN + K+ +G Q+KL ++ K
Sbjct:   336 LNVVLKYMKGGQEKLTEEAK 355

 Score = 38 (18.4 bits), Expect = 7.1e-104, Sum P(6) = 7.1e-104
 Identities = 19/77 (24%), Positives = 36/77 (46%)

Query:    92 LFLFK-RMTDTDCEVLYLSERPEKLIITN--IAVPPIAIRPSVIMDGSQSNENDITERLK 148
             L  +K +M D +CE++ L  R   LI     I    + +  S I+   Q+ EN +  +  
Sbjct:   106 LHCYKLQMKDHECEIIMLQLR---LIDAGYIIEAQELELFKSEIV--CQNTENLVAIKNG 160

Query:   149 RIIQTNASLQQELVEAN 165
              ++  + +   +L+E N
Sbjct:   161 DMVHPHIAAMYKLLEKN 177

 Score = 37 (18.1 bits), Expect = 7.1e-104, Sum P(6) = 7.1e-104
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query:  1026 ESIVQTPKIKLKQ--QHIKVLDFRKL 1049
             + +++T  I + +  QH K+LD  +L
Sbjct:  1497 DQLLKTDGINIGEMFQHNKILDLNRL 1522

 Score = 37 (18.1 bits), Expect = 1.0e-47, Sum P(5) = 1.0e-47
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query:   526 LGNGNKDGLYSVLLRDYG 543
             LG+    GLY + +  YG
Sbjct:    43 LGHAIPGGLYDIRMGSYG 60

 Score = 37 (18.1 bits), Expect = 4.4e-20, Sum P(4) = 4.4e-20
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query:    29 AVKCPRCGYINGMVKKAVAVLGIIHD 54
             AVK  R GY+   + K +  L + +D
Sbjct:   957 AVKTSRSGYLQRCLIKHLEGLSVHYD 982


>ZFIN|ZDB-GENE-030131-5286 [details] [associations]
            symbol:polr1a "polymerase (RNA) I polypeptide A"
            species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
            [GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 ZFIN:ZDB-GENE-030131-5286
            GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861 EMBL:AL929267
            EMBL:CU694378 IPI:IPI00934858 Ensembl:ENSDART00000114501
            ArrayExpress:E7F710 Bgee:E7F710 Uniprot:E7F710
        Length = 1710

 Score = 717 (257.5 bits), Expect = 3.6e-97, Sum P(4) = 3.6e-97
 Identities = 179/486 (36%), Positives = 264/486 (54%)

Query:   312 IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMNM 370
             IV+RH+++GDV+L NRQP+LHR SI  H ARI+P  + LR + + C  YNADFDGDEMN 
Sbjct:   542 IVNRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNA 601

Query:   371 HVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLM 430
             H PQ+E +R EA  L+        PK+G+ L    QD + S   +T +  F+ R  ++ +
Sbjct:   602 HFPQSELSRAEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQYTAL 661

Query:   431 CCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS-VLIRPHANMRVYVNLTVKEKTYSNK 487
               Y G  D + RV L  P ++KPV LWTGKQ+ S +L+       + +NLT K K     
Sbjct:   662 V-YRGLTDKIGRVKLLPPTLIKPVLLWTGKQVVSTLLLNVIPENSIPLNLTGKAKIPGKA 720

Query:   488 LIRTEGDEEIR---IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA 544
              ++ E    +     E+MC +   V  R  EL+ G L KA  G+ +  GL       YG 
Sbjct:   721 WVK-ESPRPVPGYVPESMCESQ--VVIRQGELLMGVLDKAHYGS-SAYGLVHCCYELYGG 776

Query:   545 HATSGCMNRLAKLSARWIGNH-GFSIGIDDVQPKKELSDKK--GKLISENYEV-CNVKIK 600
               +   ++ LA+L   ++  + GF++G++D+  K          K +   + +  + +  
Sbjct:   777 ETSGKLLSCLARLFTAYLQLYRGFTLGVEDILVKDGAKSVTCGSKALQAAFNLPASAEDT 836

Query:   601 EYNEGKLQLKPGCDAAQ--TLEAVITDILNRIREDAGKACM--G---SLPWRNSPLIMSQ 653
             E  E         D      ++    + +N++  +  K CM  G   S P  N+  +M Q
Sbjct:   837 EARERWQDAHLNIDQRDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFP-ENNLQMMVQ 895

Query:   654 CGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGL 713
              G+KGS +N  Q+   +GQ  + GRR P     +SLP F     +P + GFV   F +G+
Sbjct:   896 SGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGI 955

Query:   714 SATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLY 773
                EFFFH M GREGLVDTAVKT+ +GY+ R +IK LE L +QYD +VR++ G +VQFLY
Sbjct:   956 KPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLY 1015

Query:   774 GDDGMD 779
             G+DG+D
Sbjct:  1016 GEDGLD 1021

 Score = 581 (209.6 bits), Expect = 6.7e-80, Sum P(4) = 6.7e-80
 Identities = 158/480 (32%), Positives = 248/480 (51%)

Query:   115 LIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGW 174
             LII  + +  IA   +  ++G+Q+     +E  K + + + S    +       K  + W
Sbjct:   340 LIIQKL-LTLIADEKTKAIEGTQTELEQSSEAPK-VTEIDQSFLTSIQGVTLTDKLYSTW 397

Query:   175 ETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVIS 234
               LQ  V    +SD+  +     +     G  Q L+ K+G FR ++ GKRV+Y  R+VI 
Sbjct:   398 IHLQSLVNIVFDSDMDKL-----ITEKFPGVRQLLEKKEGLFRKHMMGKRVDYAARSVIC 452

Query:   235 PDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARV 294
             PD  +   E+ IP+  A  LTYP+ V+  N++++RQ + NGP+ +PGA M+   DG+  +
Sbjct:   453 PDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQAVLNGPNIHPGATMVVNEDGSRTI 512

Query:   295 LYGKFRNQ---LAVEL---KSGC------IVDRHLEDGDVVLFNRQPSLHRMSIMCHRAR 342
             L    + Q   +A +L    +G       IV+RH+++GDV+L NRQP+LHR SI  H AR
Sbjct:   513 LSSTNQTQREAVAKQLLTPSTGQHRIPMKIVNRHIKNGDVLLLNRQPTLHRPSIQAHCAR 572

Query:   343 IMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEIL 401
             I+P  + LR + + C  YNADFDGDEMN H PQ+E +R EA  L+        PK+G+ L
Sbjct:   573 ILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRAEAYTLVSTDQQYLVPKDGKPL 632

Query:   402 VASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQ 459
                 QD + S   +T +  F+ R  ++ +  Y G  D + RV L  P ++KPV LWTGKQ
Sbjct:   633 AGLIQDHMVSGTSMTIRGCFFTRDQYTALV-YRGLTDKIGRVKLLPPTLIKPVLLWTGKQ 691

Query:   460 LFS-VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELIS 518
             + S +L+       + +NLT K K      ++               +  V  R  EL+ 
Sbjct:   692 VVSTLLLNVIPENSIPLNLTGKAKIPGKAWVKESPRPVPGYVPESMCESQVVIRQGELLM 751

Query:   519 GQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH-GFSIGIDDVQPK 577
             G L KA  G+ +  GL       YG   +   ++ LA+L   ++  + GF++G++D+  K
Sbjct:   752 GVLDKAHYGS-SAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYRGFTLGVEDILVK 810

 Score = 193 (73.0 bits), Expect = 3.6e-97, Sum P(4) = 3.6e-97
 Identities = 38/100 (38%), Positives = 61/100 (61%)

Query:   903 EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK-RISTPIIT 961
             + G A+G + AQSIGEP TQMTL TFHFAG   MN+T G+PR++EI+  A   I TP+++
Sbjct:  1202 DPGEAVGLVAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLVASSNIKTPMMS 1261

Query:   962 AELECNDNE-NAARVVKGRIEKTLLGQVAKSIKIVMTSRL 1000
               +  N       + ++ +I +  L +V   + ++ + R+
Sbjct:  1262 IPVVMNKKALKQVKTLRKKITRVCLSEVLHKVNVIESFRM 1301

 Score = 185 (70.2 bits), Expect = 3.6e-97, Sum P(4) = 3.6e-97
 Identities = 46/141 (32%), Positives = 73/141 (51%)

Query:  1108 LLVEGTGLQAVMG-AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  EG  +  +   A+ +D  +  SN +  +  T GIE A   I  EI +    +G+ +D
Sbjct:  1568 LNTEGINIHEMFKYADILDLKRLYSNEVHAMASTYGIEVALRVIEKEIKDVFAVYGIEVD 1627

Query:  1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
              RH+ L+AD M F G    + RFGIQ  + S L   +FE +   L  A++ G  D++   
Sbjct:  1628 PRHLSLVADYMCFEGVYKPLNRFGIQS-NSSPLQQMTFETSFKFLKQATMLGSYDKLSSP 1686

Query:  1227 SECIIMGIPMPLGTGILKIRQ 1247
             S C+++G  +  GTGI  ++Q
Sbjct:  1687 SACLVVGKVVKGGTGIFDLKQ 1707

 Score = 56 (24.8 bits), Expect = 3.6e-97, Sum P(4) = 3.6e-97
 Identities = 17/66 (25%), Positives = 32/66 (48%)

Query:   112 PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL-VEANSAFKS 170
             PE   +  + VPP   RP +   G Q   N  T  ++ +++    +Q+ L + A+   K+
Sbjct:   298 PEVFFLELLVVPPCRYRP-INRLGDQMFTNGQTVNMQAVLKDGLIIQKLLTLIADEKTKA 356

Query:   171 LAGWET 176
             + G +T
Sbjct:   357 IEGTQT 362

 Score = 42 (19.8 bits), Expect = 1.1e-66, Sum P(3) = 1.1e-66
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query:   908 IGAIGAQSIGEPGTQMTLKT-FHFAGVASM 936
             +   G QS   P  QMT +T F F   A+M
Sbjct:  1647 LNRFGIQSNSSPLQQMTFETSFKFLKQATM 1676

 Score = 42 (19.8 bits), Expect = 9.1e-24, Sum P(4) = 9.1e-24
 Identities = 16/52 (30%), Positives = 21/52 (40%)

Query:   353 ESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAS 404
             ES  N +N      E +     T+  R   LL +  Q  LC P     LVA+
Sbjct:  1164 ESYLNQFNIK---QEFSASSETTDADRLRNLLQLKWQRALCDPGEAVGLVAA 1212

 Score = 41 (19.5 bits), Expect = 6.5e-23, Sum P(3) = 6.5e-23
 Identities = 16/70 (22%), Positives = 29/70 (41%)

Query:   790 PLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFL--NSLRKFFEG 847
             PL FD+L + ++ +C         P+    ++  QL      +  E F   N L +F E 
Sbjct:    90 PLFFDKLYLLIRGSCLSC-HILKCPRAAIHLLLCQLKLLDVGAMKEVFEIENVLNQFLES 148

Query:   848 QQDKLDKKIK 857
                   ++I+
Sbjct:   149 NPSPPGEEIQ 158

 Score = 40 (19.1 bits), Expect = 1.7e-95, Sum P(4) = 1.7e-95
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query:    57 KVTESLQEFASAITHTKESKAAVNVATYILNPVNVLF---LFKRMTDTDCEVLYLSERPE 113
             KVTE  Q F ++I     +    +   ++ + VN++F   + K +T+    V  L E+ E
Sbjct:   372 KVTEIDQSFLTSIQGVTLTDKLYSTWIHLQSLVNIVFDSDMDKLITEKFPGVRQLLEKKE 431

Query:   114 KL 115
              L
Sbjct:   432 GL 433

 Score = 39 (18.8 bits), Expect = 6.7e-80, Sum P(4) = 6.7e-80
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query:   567 FSIGIDDVQ-PKKE-LSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
             F  G D +  PK + L  ++   I +NYEV   K K  +E   ++ P
Sbjct:  1013 FLYGEDGLDIPKTQFLQPRQFPFIKDNYEVIR-KSKCLDEVLAKMDP 1058

 Score = 38 (18.4 bits), Expect = 6.2e-22, Sum P(4) = 6.2e-22
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query:    25 MASKAVKCPRCGYINGMVKKAVAVLGIIHD 54
             +   AVK  R GY+   V K +  L + +D
Sbjct:   971 LVDTAVKTSRSGYLQRCVIKHLEGLVVQYD 1000


>DICTYBASE|DDB_G0275759 [details] [associations]
            symbol:rpa1 "RNA polymerase I, largest subunit"
            species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA;ISS]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0006360 "transcription
            from RNA polymerase I promoter" evidence=ISS] [GO:0005736
            "DNA-directed RNA polymerase I complex" evidence=ISS] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0016779
            "nucleotidyltransferase activity" evidence=IEA] [GO:0016740
            "transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
            evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
            dictyBase:DDB_G0275759 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
            GenomeReviews:CM000151_GR EMBL:AAFI02000013 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
            eggNOG:COG0086 RefSeq:XP_643519.1 HSSP:P04050
            ProteinModelPortal:Q86H36 STRING:Q86H36 PRIDE:Q86H36
            EnsemblProtists:DDB0216292 GeneID:8620100 KEGG:ddi:DDB_G0275759
            KO:K02999 OMA:CLLNETT ProtClustDB:CLSZ2497252
            PANTHER:PTHR19376:SF11 Uniprot:Q86H36
        Length = 1615

 Score = 818 (293.0 bits), Expect = 4.1e-93, Sum P(2) = 4.1e-93
 Identities = 228/709 (32%), Positives = 350/709 (49%)

Query:   313 VDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW--RTLRFNESVCNPYNADFDGDEMNM 370
             V RHL  GD VL NRQP+LH+  IM HR +++    +TLR + S C+ YNADFDGDEMN+
Sbjct:   542 VYRHLLSGDYVLANRQPTLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMNI 601

Query:   371 HVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLM 430
             H PQ+  A  E   +         P+NG  L    QD + +  L+T++DT + +A F  +
Sbjct:   602 HFPQSLLASAEIREICANNYQYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQAI 661

Query:   431 C---CYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNK 487
                 C+  +    +  P P ILKPV LW+GKQL S  +      R  +NL    K    K
Sbjct:   662 LYASCWSVNTKHPIVTPPPCILKPVPLWSGKQLISAALNQLTIGRAPLNLEAPSKI-PTK 720

Query:   488 LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
             +  T+G E  R       D  V  R +E+++G L K   G  +  GL       Y     
Sbjct:   721 MWGTKGLEITR-------DSHVIIRQNEMVAGILDKGHFG-ASSYGLVHTCYELYDPDVA 772

Query:   548 SGCMNRLAKLSARWIGNHGFSIGIDDVQPK-KELSDKKGKLISENYEVCNVKIK-----E 601
                +  L ++   ++ + GF+ G+DD+  K KE   +   L   N E   V  K     +
Sbjct:   773 GSLLTLLGRMFTNYLQSRGFTCGVDDLLMKNKEEKFRVETLKKANEEGYTVAAKFADLSK 832

Query:   602 YNEGKLQ------LKPGCDAAQTLEAVITDILNRIREDAGKACM--GSL-PW-RNSPLIM 651
             Y+E K +      L+   + A+ L+ ++   LN+         +  G   P+ +N+  +M
Sbjct:   833 YDEQKARDFFSKALQSEREVAR-LDGLLKKGLNQYTSKVIDTLIPGGQQKPFPKNNFSLM 891

Query:   652 SQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYS 711
             +  G+KGS +N SQ+   +GQQ + G+R P     ++LP F        A GFV + F +
Sbjct:   892 TVSGAKGSVVNFSQVSCLLGQQELEGKRVPRMVSGKTLPSFQAYDASARAGGFVMDRFLT 951

Query:   712 GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQF 771
             G+   ++FFH M GREGL+DTAVKT+ +GY+ R LIK LE LS+QYDN+VR + G ++QF
Sbjct:   952 GVRPQDYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVQYDNTVRESDGSVIQF 1011

Query:   772 LYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKE 831
              YG+D ++       +  P+  +   +  K+  P         Q + ++  +++  Y + 
Sbjct:  1012 NYGEDSLEIGKTPYLTKFPIIAENYEL-FKSQFP-------MEQLIEQLKNQEVVEYNRS 1063

Query:   832 SCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGW--DDKSQILEEVTHKTSG-ITEKQLEV 888
               ++  L+ +   F    D       F+  +    +   Q L + T    G I EK    
Sbjct:  1064 IKTQPELDPVMSKFNPSSDLGCVSESFMNQLNHYIESNPQKLIKTTSNRDGKINEKDFRN 1123

Query:   889 FIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEI 948
              +   +SR     V  G ++G + AQSIGEP TQMTL TFH AG    N+T G+PR++E+
Sbjct:  1124 LMYLYYSR---SMVSPGESVGLLCAQSIGEPSTQMTLNTFHLAGRGEANVTLGIPRLREL 1180

Query:   949 INGAK-RISTPIITAELECNDNENAARVVKGR--IEKTLLGQVAKSIKI 994
             I  A  +  TP++  E + ND+ N     K    +E   L  + K I +
Sbjct:  1181 IMTATTKPITPLM--EFQINDSTNKVETEKMAKYLEILKLSDIIKDITV 1227

 Score = 473 (171.6 bits), Expect = 2.3e-53, Sum P(3) = 2.3e-53
 Identities = 150/508 (29%), Positives = 233/508 (45%)

Query:   113 EKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLA 172
             + L +    V P   RP   ++G +S E+      K ++++N  ++Q +       K L 
Sbjct:   334 DSLFMRVFPVTPARYRPPNFVNGRRS-EHPQNSHYKGMVKSNKMIRQSIDAGEGKAKFLV 392

Query:   173 GWET-LQVEVAQ-YINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
                  LQ+ V   Y NS  +    + +VA   +G  Q L+ K+G FR ++ GKRV Y  R
Sbjct:   393 NSVCDLQMHVNNMYDNS--KSNSNTNEVA---NGIKQILEKKEGLFRKHMMGKRVNYAAR 447

Query:   231 TVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDG 290
             TVISPD +L+  E+ +P   A+ LT+P+ V+  N  +L Q + NGP++YPGA  I   +G
Sbjct:   448 TVISPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQYPGANFIEDENG 507

Query:   291 TARVLYGKFRNQLAVELKSGCI-------------VDRHLEDGDVVLFNRQPSLHRMSIM 337
                +   K   +  + L    +             V RHL  GD VL NRQP+LH+  IM
Sbjct:   508 HL-INLSKESQEKRIALSKTLLTSHPHAPRGVNKKVYRHLLSGDYVLANRQPTLHKPGIM 566

Query:   338 CHRARIMPW--RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTP 395
              HR +++    +TLR + S C+ YNADFDGDEMN+H PQ+  A  E   +         P
Sbjct:   567 GHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMNIHFPQSLLASAEIREICANNYQYLVP 626

Query:   396 KNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELW 455
             +NG  L    QD + +  L+T++DT + +A F  +  Y       V+   P +  P  + 
Sbjct:   627 RNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQAIL-YASCWS--VNTKHPIVTPPPCIL 683

Query:   456 TGKQLFS--VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRN 513
                 L+S   LI    N        +  +  S    +  G + + I      D  V  R 
Sbjct:   684 KPVPLWSGKQLISAALNQLTIGRAPLNLEAPSKIPTKMWGTKGLEIT----RDSHVIIRQ 739

Query:   514 SELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDD 573
             +E+++G L K   G  +  GL       Y        +  L ++   ++ + GF+ G+DD
Sbjct:   740 NEMVAGILDKGHFG-ASSYGLVHTCYELYDPDVAGSLLTLLGRMFTNYLQSRGFTCGVDD 798

Query:   574 VQPK-KELSDKKGKLISENYEVCNVKIK 600
             +  K KE   +   L   N E   V  K
Sbjct:   799 LLMKNKEEKFRVETLKKANEEGYTVAAK 826

 Score = 191 (72.3 bits), Expect = 4.1e-93, Sum P(2) = 4.1e-93
 Identities = 50/143 (34%), Positives = 70/143 (48%)

Query:  1106 YRLLVEGTGLQAVMGAEG---IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHG 1162
             Y +  EG  L  +        ID   T  N I+ + Q  G+EA R  +  EI+    A+G
Sbjct:  1471 YSIQSEGVNLSEIFELRDKLKIDEIYT--NDIYAILQKYGVEACRQAVTSEISNVFAAYG 1528

Query:  1163 MSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDR 1222
             +S+DKRH++LL D MTF G    + R GI+  + S     SFE T   L  AS+ G  D 
Sbjct:  1529 ISVDKRHLILLGDYMTFEGGYRALNRIGIEN-NTSPFQKMSFETTFSFLSKASLMGDYDT 1587

Query:  1223 IEGVSECIIMGIPMPLGTGILKI 1245
             +   S  I++G  +  GTG   I
Sbjct:  1588 VTSPSSRIVLGQIVKNGTGSFTI 1610

 Score = 45 (20.9 bits), Expect = 3.9e-38, Sum P(3) = 3.9e-38
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query:   825 LAAYGKESCSEAFLNSLRKFFEGQQDKLDKK 855
             L  YG E+C +A  + +   F      +DK+
Sbjct:  1504 LQKYGVEACRQAVTSEISNVFAAYGISVDKR 1534

 Score = 43 (20.2 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
 Identities = 21/88 (23%), Positives = 39/88 (44%)

Query:   814 PQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDD---KSQI 870
             P   S +  K+   +G        L++++K FE +++ LD  +  +  I  +    K  +
Sbjct:   266 PTNFSSV--KEQTEHGTWFAPWEVLDNMKKLFENEKEILDMLLGHLVPIVTNKGGAKKNV 323

Query:   871 LEEVTHKTSGITEKQLEVFIQTCFSRYR 898
               + T K S +    + VF  T  +RYR
Sbjct:   324 GRQFT-KESNVDSLFMRVFPVTP-ARYR 349

 Score = 41 (19.5 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query:    29 AVKCPRCGYINGMVKKAVAVLGIIHDRSKVTES 61
             AVK  R GY+   + K +  L + +D + V ES
Sbjct:   973 AVKTSRSGYLQRCLIKHLEGLSVQYDNT-VRES 1004

 Score = 37 (18.1 bits), Expect = 2.3e-53, Sum P(3) = 2.3e-53
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query:   575 QPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             QP  +    K K+I+++ +    K K   +  +  + G + A+
Sbjct:  1331 QPSSQNKKSKSKVITQDDDSVAAKSKNKKKQNVNYEDGEEEAE 1373


>WB|WBGene00012999 [details] [associations]
            symbol:rpoa-1 species:6239 "Caenorhabditis elegans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            HSSP:P04050 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
            GeneTree:ENSGT00550000074861 EMBL:Z83219 EMBL:AL032648 EMBL:Z93392
            PIR:A88355 PIR:T19606 RefSeq:NP_001022450.1
            ProteinModelPortal:G5ED21 SMR:G5ED21 PRIDE:G5ED21
            EnsemblMetazoa:Y48E1A.1a GeneID:175015 KEGG:cel:CELE_Y48E1A.1
            CTD:175015 WormBase:Y48E1A.1a NextBio:886412 Uniprot:G5ED21
        Length = 1737

 Score = 581 (209.6 bits), Expect = 2.4e-91, Sum P(4) = 2.4e-91
 Identities = 157/516 (30%), Positives = 264/516 (51%)

Query:   115 LIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQ-ELV---EANSAFKS 170
             L +  I VPP   RP  +  G+Q  E+  T  L+++++   ++    L+   + ++  K 
Sbjct:   353 LFLERILVPPKKFRPIRMFKGAQY-EDPQTLNLRKVLEATETISAISLIMKGDTSAQLKE 411

Query:   171 LAG----WETLQVEVAQ-YINSDVRG-VPFSMQVAR----PLSGFVQRLKGKQGRFRGNL 220
             L       +T+  ++   Y+   +R    F   + +     ++G  Q L+ KQG FR ++
Sbjct:   412 LIANRVRGKTINAQMHDAYLQLQLRANAIFDQDLNKGDRDSIAGIKQILEKKQGLFRMHM 471

Query:   221 SGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYP 280
              GKRV +  R+VI+PDP L I E+ IP   A+ LT+ E V+  N+ +++  ++ GP ++P
Sbjct:   472 MGKRVNFACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPHQHP 531

Query:   281 GARMIRYPDGTARVLYGK-----FRNQLAVELKSGCI--------VDRHLEDGDVVLFNR 327
             GA     P G   +L  K      R Q+A  L +           V RH+++GD+++ NR
Sbjct:   532 GANFFVEPSGKKTMLGDKPEEKKRRMQMAKTLNAATTENLRQTPKVLRHMKNGDMIMMNR 591

Query:   328 QPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
             QPSLH+ SI+ HRAR++   R LR N + C  YNADFDGDEMN H+ Q+  A+TE   + 
Sbjct:   592 QPSLHKPSILGHRARVLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHIAQTEVREIA 651

Query:   387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS-LMCCYMGDGMDRVDLPT 445
              V +N   PK+   L+   QD + S  L++ +D F ++  F  L+         R+++P 
Sbjct:   652 NVGSNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLNKEDFMHLVLASFAQYSKRIEIPP 711

Query:   446 PAILKPVELWTGKQLFSVLIRPHA-NMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
             P IL P  LWTGKQ+ + +++    + +  +NL  K KT  +  I   G +  + +    
Sbjct:   712 PTILYPKRLWTGKQVITTIVKNCIPDGKPLINLDGKAKTPLSCWI-VPGFDAPQFDM--- 767

Query:   505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
             ++  V FR  EL+ G L KA  G   + GL       YG       ++  ++L   ++  
Sbjct:   768 SESHVVFRQGELLVGVLDKAHFG-ATQFGLAHCAFELYGHRCGVQLLSCFSRLFTTYLQF 826

Query:   565 HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIK 600
             HGF++G+ D+   K+   K+ + + E+  + N  +K
Sbjct:   827 HGFTLGVADILVVKDADGKRKEAVMESRTIGNQVVK 862

 Score = 322 (118.4 bits), Expect = 2.4e-91, Sum P(4) = 2.4e-91
 Identities = 95/310 (30%), Positives = 151/310 (48%)

Query:   645 RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 704
             +N+  +M Q G+KGS +N  Q+  C+GQ  + G+R       R+LP F      P A G+
Sbjct:   927 QNALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTIAGRTLPSFRCFDPSPRAGGY 986

Query:   705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
             +   F +G++  E FFHTM GREGL+DTAVKT+ +GY+ R +IK LE + + YD++VR+ 
Sbjct:   987 IDQRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDH 1046

Query:   765 GGCIVQFLYGDDGMDP--ANMEGKSGEPLNFDRLLMKVKATCPPA------GQRYLSPQQ 816
              G ++QF YG+DGMD   A    K   P   D L     A+ P        G +  + ++
Sbjct:  1047 DGSVIQFRYGEDGMDTTKATFLNKKTMPFLEDNLEAVTLASKPEGVTDADFGIKE-TEKR 1105

Query:   817 VSEIVE--KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEV 874
               +IV+  K+    GK    +++ ++   F   +   ++KK        W + S  LEE 
Sbjct:  1106 YKKIVKWKKKAEKSGKSGTKKSYFSAFTNF-SAEHIGMEKKRILAM---WFELS--LEER 1159

Query:   875 THKTSGITEKQLEV----FIQTC----FSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLK 926
                  GI +K  E     F  TC         +  +E G     +      EP  ++  +
Sbjct:  1160 EQYARGIPKKCPEAVDERFNPTCKLGALPEKMLDEIE-GFCTRRVKKVDDEEPPKEVLKR 1218

Query:   927 TFHFAGVASM 936
             T ++ G+ S+
Sbjct:  1219 TLYWKGMRSL 1228

 Score = 196 (74.1 bits), Expect = 3.5e-78, Sum P(4) = 3.5e-78
 Identities = 54/182 (29%), Positives = 93/182 (51%)

Query:   883 EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
             E   EV  +T + +      + G  +G + AQSIGEP TQMTL TFHFAG   MN+T G+
Sbjct:  1210 EPPKEVLKRTLYWKGMRSLADPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGI 1269

Query:   943 PRIKEII-NGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSI----KIVMT 997
             PR++EI+   +K I+TP  +  +    + +    +K  +++  L Q+ K+     KI +T
Sbjct:  1270 PRLREILMTASKSIATPSASIAVIAGTSRDRIDSIKRELDRVYLKQLLKNFSLEEKITLT 1329

Query:   998 SR-------LASIVIALDMETIQDAHLC---INADIVKESIVQTPKIKLKQQHIKVLDFR 1047
                      L   ++A +   +   HL    I  +I K  I++  +   K+ H ++ D++
Sbjct:  1330 QNQSCRRYHLRIDILAAEKRELGARHLKRSQIMEEIEKRFILRVAQAIKKKYH-EITDYQ 1388

Query:  1048 KL 1049
             ++
Sbjct:  1389 QM 1390

 Score = 163 (62.4 bits), Expect = 2.4e-91, Sum P(4) = 2.4e-91
 Identities = 42/135 (31%), Positives = 63/135 (46%)

Query:  1108 LLVEGTGLQAVMG-AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  +G  L A    A+ +D     SN +  + +  G+EA    I  E+N     +G+ + 
Sbjct:  1573 LQTQGVNLAAFFKHADVLDVNSVYSNDLNLILENYGVEACSKAITTEMNNVFAVYGIEVS 1632

Query:  1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
             KRH+ L AD MTF G++    R G      S L   +FE T   L  A ++G +D +   
Sbjct:  1633 KRHLSLTADYMTFTGQIQPFNR-GAMSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSP 1691

Query:  1227 SECIIMGIPMPLGTG 1241
             S  ++MG     GTG
Sbjct:  1692 SARLVMGALPRGGTG 1706

 Score = 44 (20.5 bits), Expect = 1.5e-61, Sum P(5) = 1.5e-61
 Identities = 24/81 (29%), Positives = 43/81 (53%)

Query:   818 SEIVEKQLAAYGKESCSEAFL-NSLRKFFEGQQDKLDKKIK-FVEDIGWDDKSQILEEVT 875
             SE V+K+    G++  +E  L NS R   +  Q +L + I  +  D+  +   +++ E+ 
Sbjct:  1472 SEDVKKE-GLDGEDQTTEPLLVNSSR--IQSVQ-RLSENISSYTYDVKSNKWCEVVFELP 1527

Query:   876 --HKT----SGITEKQLEVFI 890
               +KT    S I EK++E+FI
Sbjct:  1528 LRNKTKMDVSSIVEKEVELFI 1548

 Score = 42 (19.8 bits), Expect = 2.4e-91, Sum P(4) = 2.4e-91
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query:    11 KTDLMKSIVKKCSTMASKAVKCPRCGYINGMVK 43
             K D++   ++  S +  +  KCP C   NG+++
Sbjct:   198 KKDIITEFLR--SHLFKRLQKCPLCKNRNGVLR 228

 Score = 42 (19.8 bits), Expect = 4.9e-49, Sum P(4) = 4.9e-49
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query:   825 LAAYGKESCSEAFLNSLRKFF 845
             L  YG E+CS+A    +   F
Sbjct:  1604 LENYGVEACSKAITTEMNNVF 1624

 Score = 41 (19.5 bits), Expect = 2.7e-20, Sum P(4) = 2.7e-20
 Identities = 36/171 (21%), Positives = 70/171 (40%)

Query:    29 AVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKAAVNV--ATYIL 86
             AVK  R GY+   + K +  + + +D      ++++   ++   +  +  ++   AT+ L
Sbjct:  1015 AVKTSRSGYLQRCIIKHLEGIRVHYD-----STVRDHDGSVIQFRYGEDGMDTTKATF-L 1068

Query:    87 NPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITER 146
             N   + FL     + + E + L+ +PE +   +  +     R   I+   +  E      
Sbjct:  1069 NKKTMPFL-----EDNLEAVTLASKPEGVTDADFGIKETEKRYKKIVKWKKKAEKSGKSG 1123

Query:   147 LKRIIQ---TNASLQQELVEANSAFKSLAGWETLQVEVA-QYINSDVRGVP 193
              K+      TN S +   +E     + LA W  L +E   QY     RG+P
Sbjct:  1124 TKKSYFSAFTNFSAEHIGMEKK---RILAMWFELSLEEREQY----ARGIP 1167

 Score = 37 (18.1 bits), Expect = 1.5e-61, Sum P(5) = 1.5e-61
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query:   808 GQRYLSPQQVSEIVEKQ 824
             G R+L   Q+ E +EK+
Sbjct:  1352 GARHLKRSQIMEEIEKR 1368

 Score = 37 (18.1 bits), Expect = 6.9e-20, Sum P(4) = 6.9e-20
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query:   776 DGMDPANMEGKSGEPLN 792
             DG    N++GK+  PL+
Sbjct:   737 DGKPLINLDGKAKTPLS 753


>UNIPROTKB|G4NBX7 [details] [associations]
            symbol:MGG_01158 "DNA-directed RNA polymerase"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            EMBL:CM001235 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0043581 GO:GO:0003899
            KO:K02999 PANTHER:PTHR19376:SF11 RefSeq:XP_003717763.1
            ProteinModelPortal:G4NBX7 EnsemblFungi:MGG_01158T0 GeneID:2675173
            KEGG:mgr:MGG_01158 Uniprot:G4NBX7
        Length = 1719

 Score = 767 (275.1 bits), Expect = 7.7e-82, Sum P(2) = 7.7e-82
 Identities = 223/692 (32%), Positives = 346/692 (50%)

Query:   313 VDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMNMH 371
             V RH+ +GDVVL NRQP+LH+ SIM HR R++P  +T+R + + CN YNADFDGDEMNMH
Sbjct:   593 VHRHISNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMH 652

Query:   372 VPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMC 431
              PQ E ARTEAL L    +   +   G+ L    QD L+ S  +  KDT+ DR+A+  + 
Sbjct:   653 FPQNEVARTEALQLADTDHQYISGTQGKPLRGLIQDHLSVSVALCNKDTYLDRSAYHELV 712

Query:   432 CYMG----DG---MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYV--NLTVKEK 482
              Y       G    +R++L  PAI+KP   WTGKQ+ + ++R   N+R     +L +  K
Sbjct:   713 -YNALRPESGHILRERIELVPPAIIKPKARWTGKQVITTVLR---NIRPLDCGDLWMTGK 768

Query:   483 TYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNK-DGLYSVLLRD 541
             T           EE ++      DG   F +  L   QLG ++ G  +    +Y   +  
Sbjct:   769 TQVPAHAWGVHSEEGQVLF---RDG--EFISGILDKAQLGPSSGGLVHAVHEVYGPAIAG 823

Query:   542 YGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKE 601
                 A    + R   + A   G     +  +    ++ + D +  L+        V + +
Sbjct:   824 KLLSAMGRLLTRYLNMRAFTCGMDDLKLTPEGEADRRNIIDSRAHLVGLQVAAKYVSLDQ 883

Query:   602 Y---NEG-----KLQLKPGCDAAQT-LEAVITDILNRIREDAGKACM--G---SLPWRNS 647
             +   N+      +L+     D  Q  L+ V+      + +D   AC+  G     P +N 
Sbjct:   884 HQPANDDPELLRRLEEVMRDDTKQEGLDGVMNSGSKHLSQDITTACLPKGLEKQFP-KNQ 942

Query:   648 PLIMSQCGSKGSPINISQMVAC-VGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVA 706
                M+  G+KG  +N + +++C +GQQ + GRR P     +SLP F     +  A G++ 
Sbjct:   943 MQAMTISGAKGGQVN-ANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFETDIRAGGYIV 1001

Query:   707 NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGG 766
             N F +G+   E++FH M GREGL+DTAVKT+ +GY+ R LIK +E L I YDNSVR+A G
Sbjct:  1002 NRFLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLEIGYDNSVRDADG 1061

Query:   767 CIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPP---AGQRYLSPQQV-SEIVE 822
              +VQFLYG+DG+D    +       +F  +L  +K+       +  R L   ++  EI++
Sbjct:  1062 SLVQFLYGEDGLDVTKQKYLK----DFTFILHNIKSELAQLNISDPRTLPLFELRDEILK 1117

Query:   823 KQLAAYGKESCSEAF---------LNSLRKFFEGQQDKLDKKIKFVE---DIGWDDKSQI 870
             +  +   K   +  F         LN  R  +   +   D    +V+   D    +K   
Sbjct:  1118 QNKSNLKKAKANPRFFTGEPVSSMLNPTRYAYATSEKFFDAMSSYVKENPDALIKEKDDK 1177

Query:   871 LEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHF 930
             L     ++S I     +   +   ++Y    V  G A+G +  QS+GEP TQMTL TFH 
Sbjct:  1178 LRNSGPQSSSIVRLNRKAAEKVLSAKYMRSLVHPGEAVGIVAGQSVGEPSTQMTLNTFHL 1237

Query:   931 AGVASMNITQGVPRIKEII-NGAKRISTPIIT 961
             AG ++ N+T G+PR++E++   + +ISTP +T
Sbjct:  1238 AGHSAKNVTLGIPRLRELLMTASSKISTPSMT 1269

 Score = 549 (198.3 bits), Expect = 1.3e-56, Sum P(3) = 1.3e-56
 Identities = 135/336 (40%), Positives = 183/336 (54%)

Query:   117 ITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQ---ELVEANSAFKSLAG 173
             +  + VPP   RP      SQ NE       K I++ +  L Q   +L    S      G
Sbjct:   373 VQTLLVPPNRFRPEARTGDSQINEAQQNSLYKAILKASTKLTQIFRDLQNPTSLLSQRHG 432

Query:   174 WETLQV-----EVAQYINS--DVRGVPFSMQVARPLS-GFVQRLKGKQGRFRGNLSGKRV 225
              +T  +     E+   +N+  D    P     A+ L  G  Q+L+ K+G FR N+ GKRV
Sbjct:   433 KDTTILHEAWTELQDCVNTLIDNTKSPTQGAAAKALEEGIKQKLEKKEGLFRKNMMGKRV 492

Query:   226 EYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI 285
              Y  R+VISPDPN++  E+ +P   AR LTYPE V+ HN   ++Q + NGPDK+PGA  I
Sbjct:   493 NYAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFRDMQQAVINGPDKWPGAAAI 552

Query:   286 RYPDGTARVLYGKF---RNQLAVEL------KSGCI----VDRHLEDGDVVLFNRQPSLH 332
                +G    L  K    R+ LA +L       SG +    V RH+ +GDVVL NRQP+LH
Sbjct:   553 ENENGQIVNLRNKSQEERSSLANQLLAPTSNNSGNMRNKKVHRHISNGDVVLMNRQPTLH 612

Query:   333 RMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNN 391
             + SIM HR R++P  +T+R + + CN YNADFDGDEMNMH PQ E ARTEAL L    + 
Sbjct:   613 KPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNEVARTEALQLADTDHQ 672

Query:   392 LCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 427
               +   G+ L    QD L+ S  +  KDT+ DR+A+
Sbjct:   673 YISGTQGKPLRGLIQDHLSVSVALCNKDTYLDRSAY 708

 Score = 141 (54.7 bits), Expect = 7.7e-82, Sum P(2) = 7.7e-82
 Identities = 40/135 (29%), Positives = 67/135 (49%)

Query:  1112 GTGLQAVMG-AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
             G+ L+A+      I+  +  +N +  V +  G+EA R  II E+    ++H +++D RH+
Sbjct:  1571 GSNLRAMQQYGSFINPNRISTNDVAAVLEIYGVEACRANIIRELRAVFESHAITVDNRHL 1630

Query:  1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
              L+AD MT  G      R G+   + S     SFE T   L +A ++G  D +   S  +
Sbjct:  1631 NLIADHMTRSGGFTPFNRMGLSG-NVSPFTKMSFETTLAFLKDAVLDGDWDDLSTPSGRL 1689

Query:  1231 IMGIPMPLGTGILKI 1245
             +MG    +GTG   +
Sbjct:  1690 VMGRLGHVGTGAFDV 1704

 Score = 58 (25.5 bits), Expect = 5.9e-48, Sum P(3) = 5.9e-48
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query:   811 YLSPQQVS-EIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKK-IKFVED 861
             +++P ++S   V   L  YG E+C    +  LR  FE     +D + +  + D
Sbjct:  1583 FINPNRISTNDVAAVLEIYGVEACRANIIRELRAVFESHAITVDNRHLNLIAD 1635

 Score = 41 (19.5 bits), Expect = 2.9e-47, Sum P(2) = 2.9e-47
 Identities = 29/126 (23%), Positives = 57/126 (45%)

Query:  1111 EGTGLQAVMGAEGIDGCKTKSNHIFE-VQQTLGIEAARICIID-------EI-NETMKAH 1161
             +G+ +Q + G +G+D  K K    F  +   +  E A++ I D       E+ +E +K +
Sbjct:  1060 DGSLVQFLYGEDGLDVTKQKYLKDFTFILHNIKSELAQLNISDPRTLPLFELRDEILKQN 1119

Query:  1162 GMSIDKRHMMLLADLMTFRGE----VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVN 1217
               ++ K      A+   F GE    +L  TR+     +K    ++S+ K      +A + 
Sbjct:  1120 KSNLKKAK----ANPRFFTGEPVSSMLNPTRYAYATSEKFFDAMSSYVKENP---DALIK 1172

Query:  1218 GRDDRI 1223
              +DD++
Sbjct:  1173 EKDDKL 1178

 Score = 40 (19.1 bits), Expect = 1.3e-56, Sum P(3) = 1.3e-56
 Identities = 8/35 (22%), Positives = 18/35 (51%)

Query:   596 NVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRI 630
             N K+ +  + +L+  P  +  +T     +D+LN +
Sbjct:  1311 NHKLAKMFDVRLRFFPSAEYTKTYAITTSDVLNTV 1345


>UNIPROTKB|Q6NX41 [details] [associations]
            symbol:POLR2A "DNA-directed RNA polymerase" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            SMART:SM00663 GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 EMBL:AC113189 GO:GO:0003899 IPI:IPI00031627
            UniGene:Hs.270017 HGNC:HGNC:9187 ChiTaRS:POLR2A EMBL:BC067295
            SMR:Q6NX41 STRING:Q6NX41 Ensembl:ENST00000572844 UCSC:uc002ghe.3
            HOVERGEN:HBG097653 Uniprot:Q6NX41
        Length = 566

 Score = 722 (259.2 bits), Expect = 2.2e-72, Sum P(2) = 2.2e-72
 Identities = 147/345 (42%), Positives = 226/345 (65%)

Query:    85 ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
             +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct:   215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query:   142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
             D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct:   275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query:   201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
             PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct:   335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query:   261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
             +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct:   395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query:   320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
             GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct:   453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query:   380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDR 424
              E   L  V   + TP++   ++   QD LT+    T++D F +R
Sbjct:   513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557

 Score = 45 (20.9 bits), Expect = 2.2e-72, Sum P(2) = 2.2e-72
 Identities = 18/70 (25%), Positives = 31/70 (44%)

Query:     4 PKMEALRKTDLMKSIVKK---CSTMASKAVKCP-RCGYINGMVKKAVAVLGIIHDRSKVT 59
             PK+  L   D  + ++++   C T A    +CP   G+I   + K V  +G +    KV 
Sbjct:    52 PKLGGLM--DPRQGVIERTGRCQTCAGNMTECPGHFGHIE--LAKPVFHVGFLVKTMKVL 107

Query:    60 ESLQEFASAI 69
               +  F S +
Sbjct:   108 RCVCFFCSKL 117


>TIGR_CMR|BA_0103 [details] [associations]
            symbol:BA_0103 "DNA-directed RNA polymerase, beta' subunit"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000345
            "cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
            HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            eggNOG:COG0086 KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 EMBL:X89230 RefSeq:NP_842671.2
            RefSeq:YP_016708.1 RefSeq:YP_026389.1 ProteinModelPortal:P77819
            IntAct:P77819 DNASU:1086436 EnsemblBacteria:EBBACT00000011911
            EnsemblBacteria:EBBACT00000018208 EnsemblBacteria:EBBACT00000020960
            GeneID:1086436 GeneID:2818165 GeneID:2851002 KEGG:ban:BA_0103
            KEGG:bar:GBAA_0103 KEGG:bat:BAS0103 HOGENOM:HOG000218387
            BioCyc:BANT260799:GJAJ-114-MONOMER
            BioCyc:BANT261594:GJ7F-116-MONOMER Uniprot:P77819
        Length = 1203

 Score = 255 (94.8 bits), Expect = 1.2e-63, Sum P(6) = 1.2e-63
 Identities = 87/358 (24%), Positives = 161/358 (44%)

Query:   323 VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA 382
             VL NR P+LHR+ I      ++  R +R +  VC  YNADFDGD+M +HVP + EA+ EA
Sbjct:   410 VLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEA 469

Query:   383 LLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT--RKDTFYDRAAFS----LMCCYMGD 436
              LLM    N+  PK+G+ +V  +QD +  ++ +T  R+    +   F      +  Y   
Sbjct:   470 RLLMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTLEREGAIGEGMVFKDANEALLAYQNG 529

Query:   437 GMD---RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
              +    RV +   A+      +T +Q   +L+     + ++  +  +   Y N+   +  
Sbjct:   530 YVHLHTRVAVAASAVNNVT--FTEEQKNMLLLTTVGKL-IFNEILPESFPYINEPTNSNL 586

Query:   494 DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
             ++E   +        +     E+I+ +   A         + + + + +    TS  ++R
Sbjct:   587 EKETPAKYFVEKGANI----KEIIASREEVAPFSKKILGNIIAEVFKRFKITETSRMLDR 642

Query:   554 LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
             +  L  ++    G ++G+ D+     L +K   L     +V NV IK++  G +  +   
Sbjct:   643 MKNLGFKYSTKAGITVGVSDILV---LGEKDEILHEAQAKVDNV-IKQFRRGLITEEERY 698

Query:   614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
             D   ++ +   D++       GK  M SL  RN   +MS  G++G+  N +Q+    G
Sbjct:   699 DRVISIWSNAKDVIQ------GKL-MKSLNKRNPIFMMSDSGARGNASNFTQLAGMRG 749

 Score = 212 (79.7 bits), Expect = 1.2e-63, Sum P(6) = 1.2e-63
 Identities = 59/169 (34%), Positives = 87/169 (51%)

Query:   112 PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSL 171
             P  +I+  + V P  +RP V +DG +   +D+ +  +R+I  N  L++ L     +    
Sbjct:   223 PSWMILDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQ 282

Query:   172 AGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRT 231
                  LQ  V   I++  RG P +    RPL      LKGKQGRFR NL GKRV+Y+GR+
Sbjct:   283 NEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRS 342

Query:   232 VISPDPNLKITEVAIPIRMARILTYP-------ERVSDHNIEKLRQCIQ 273
             VI   PNLK+ +  +P  MA  L  P       E+   HNI+  ++ I+
Sbjct:   343 VIVVGPNLKMYQCGLPKEMALELFKPFVMKELVEKGLAHNIKSAKRKIE 391

 Score = 182 (69.1 bits), Expect = 1.2e-63, Sum P(6) = 1.2e-63
 Identities = 48/104 (46%), Positives = 64/104 (61%)

Query:   902 VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIIT 961
             VE G A+G I AQSIGEPGTQ+T++TFH  GVA  +ITQG+PRI+EI   A+      + 
Sbjct:   913 VEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIFE-ARNPKGQAVI 971

Query:   962 AELECNDNENAA-RVVKGRIEKTLLGQV-AKSIKIVMTSRLASI 1003
             +E+   D   AA   VK R E  + G+V A++  I   +RL  I
Sbjct:   972 SEI---DGVIAAINDVKDRQEVVVQGEVEARTYAIPYGARLKVI 1012

 Score = 144 (55.7 bits), Expect = 1.2e-63, Sum P(6) = 1.2e-63
 Identities = 26/61 (42%), Positives = 42/61 (68%)

Query:   705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
             + +SF  GL+  E+F  T G R+GL DTA+KTAD+GY++RRL+   +D+ ++ D+   + 
Sbjct:   763 IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDR 822

Query:   765 G 765
             G
Sbjct:   823 G 823

 Score = 111 (44.1 bits), Expect = 1.2e-63, Sum P(6) = 1.2e-63
 Identities = 27/74 (36%), Positives = 45/74 (60%)

Query:  1178 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP 1237
             T R  +LGIT+  ++    S L  ASF++T   L +A++ G+ D + G+ E +I+G  +P
Sbjct:  1114 TARPVLLGITKASLET--DSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVP 1171

Query:  1238 LGTGILKIRQRDAV 1251
              GTG+ + R+ D V
Sbjct:  1172 AGTGMNRYRKVDLV 1185

 Score = 42 (19.8 bits), Expect = 2.8e-17, Sum P(4) = 2.8e-17
 Identities = 27/100 (27%), Positives = 37/100 (37%)

Query:   907 AIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPI-ITAELE 965
             A  A+   +  E    M L T     + +  + +  P I E  N      TP     E  
Sbjct:   540 AASAVNNVTFTEEQKNMLLLTTVGKLIFNEILPESFPYINEPTNSNLEKETPAKYFVEKG 599

Query:   966 CNDNEN-AARVVKGRIEKTLLG----QVAKSIKIVMTSRL 1000
              N  E  A+R       K +LG    +V K  KI  TSR+
Sbjct:   600 ANIKEIIASREEVAPFSKKILGNIIAEVFKRFKITETSRM 639

 Score = 39 (18.8 bits), Expect = 1.2e-63, Sum P(6) = 1.2e-63
 Identities = 8/42 (19%), Positives = 21/42 (50%)

Query:  1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLM 1177
             E+ +   I A +  ++ E+ +  +  G+ I  +H+ ++   M
Sbjct:  1032 ELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQM 1073

 Score = 39 (18.8 bits), Expect = 5.6e-31, Sum P(5) = 5.6e-31
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query:   395 PKNGEILVASTQ 406
             P+ GE+LVA  Q
Sbjct:   855 PETGEVLVAENQ 866


>TIGR_CMR|CHY_2317 [details] [associations]
            symbol:CHY_2317 "DNA-directed RNA polymerase, beta'
            subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
            HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 InterPro:IPR012756
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            eggNOG:COG0086 KO:K03046 TIGRFAMs:TIGR02388 OMA:DINDKHI
            ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 HOGENOM:HOG000218387
            RefSeq:YP_361126.1 ProteinModelPortal:Q3A9Q8 SMR:Q3A9Q8
            STRING:Q3A9Q8 PRIDE:Q3A9Q8 GeneID:3727667 KEGG:chy:CHY_2317
            PATRIC:21277703 BioCyc:CHYD246194:GJCN-2316-MONOMER Uniprot:Q3A9Q8
        Length = 1152

 Score = 225 (84.3 bits), Expect = 2.0e-62, Sum P(6) = 2.0e-62
 Identities = 62/171 (36%), Positives = 94/171 (54%)

Query:   111 RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
             RPE +I+  I V P  +RP V +DG +   +D+ +  +R+I  N  L++ L+E  +    
Sbjct:   222 RPEWMILDVIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR-LLELGAPDII 280

Query:   171 LAGWET-LQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +   +  LQ  V   I++  RG P +    RPL      LKGKQGRFR NL GKRV+Y+G
Sbjct:   281 VRNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSG 340

Query:   230 RTVISPDPNLKITEVAIPIRMARILTYP----ERVSD---HNIEKLRQCIQ 273
             R+VI   P LK+ +  +P  MA  L  P    + V+D   HNI+  ++ ++
Sbjct:   341 RSVIVVGPELKLHQCGLPKEMALELFKPFVMKKLVADGIAHNIKSAKRMVE 391

 Score = 214 (80.4 bits), Expect = 2.0e-62, Sum P(6) = 2.0e-62
 Identities = 41/94 (43%), Positives = 60/94 (63%)

Query:   323 VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA 382
             VL NR P+LHR+ I      ++  R ++ +  VC  YNADFDGD+M +HVP + EA+ EA
Sbjct:   410 VLLNRAPTLHRLGIQAFEPVLVEGRAIQIHPLVCTAYNADFDGDQMAVHVPLSAEAQAEA 469

Query:   383 LLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
              LLM   +N+  PK+G+ +V  TQD +  S+ +T
Sbjct:   470 RLLMLSSHNILNPKDGKPVVVPTQDMVIGSYYLT 503

 Score = 192 (72.6 bits), Expect = 2.0e-62, Sum P(6) = 2.0e-62
 Identities = 64/200 (32%), Positives = 100/200 (50%)

Query:   869 QILEEVTHKTSGITEKQLEV-FIQTCFSRYRV-KR-----------VEAGTAIGAIGAQS 915
             +I EE+  K      K++++  + TC +R+ V  R           V+ G A+G I AQS
Sbjct:   828 EITEEIAEKIVSANIKKVKIRSVLTCRTRHGVCTRCYGRNLATNSIVDIGEAVGIIAAQS 887

Query:   916 IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARV 975
             IGEPGTQ+T++TFH  GVA  +ITQG+PR++E+    +     IIT E+   D     R 
Sbjct:   888 IGEPGTQLTMRTFHTGGVAGEDITQGLPRVEELFEARRPKGQAIIT-EI---DGVVEVRD 943

Query:   976 VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLC---INA-DIVKESIVQT 1031
              KGR E  ++ Q     K+   +  A I +    +      L    IN  D++K   ++ 
Sbjct:   944 NKGRREIEVINQETGERKVYPITYQARIKVQTGDKVYAGDELTEGPINPHDLIKVKGIEG 1003

Query:  1032 PKIKLKQQHIKVLDFRKLEI 1051
              ++ L Q+  KV   + +EI
Sbjct:  1004 AQLYLLQEVQKVYRMQGVEI 1023

 Score = 139 (54.0 bits), Expect = 2.0e-62, Sum P(6) = 2.0e-62
 Identities = 41/125 (32%), Positives = 67/125 (53%)

Query:   708 SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
             +F  GL+  E+F  T G R+GL DTA++TAD+GY++RRL+   +D+ ++ ++     G  
Sbjct:   727 NFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVCQDVIVREEDCGTEDG-- 784

Query:   768 IVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA---TCPPAGQRYLSPQQ--VSEIVE 822
                 +Y  D  D  ++     E L  DR+L +V A     P  G+  ++  Q    EI E
Sbjct:   785 ----IYVTDVKDGTDVI----EKLE-DRILGRVAAEDVVHPETGELLVAKNQEITEEIAE 835

Query:   823 KQLAA 827
             K ++A
Sbjct:   836 KIVSA 840

 Score = 96 (38.9 bits), Expect = 2.0e-62, Sum P(6) = 2.0e-62
 Identities = 24/69 (34%), Positives = 40/69 (57%)

Query:  1178 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP 1237
             T +  +LGIT+  +     S L  ASF++T   L  A++ G+ D + G+ E +I+G  +P
Sbjct:  1076 TAKRVLLGITKASLAT--DSFLSAASFQETTRVLTEAAIKGKVDPLLGLKENVIIGKLIP 1133

Query:  1238 LGTGILKIR 1246
              GTG+ + R
Sbjct:  1134 AGTGMARYR 1142

 Score = 66 (28.3 bits), Expect = 2.0e-62, Sum P(6) = 2.0e-62
 Identities = 33/135 (24%), Positives = 59/135 (43%)

Query:   540 RDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISE-NYEVCNVK 598
             R  G   T   ++ L KL   +    G +IGI D+   KE    K +++ E +  V +++
Sbjct:   588 RKLGYEKTGYLLDGLKKLGFHYATKAGLTIGIVDITVPKE----KQEILEEADRMVADIE 643

Query:   599 IKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR--NSPLIMSQCGS 656
             +K Y  G +         +  + V+ DI N   E   K  + +L     N   +M++ G+
Sbjct:   644 VK-YRRGLIT------EDERYQRVV-DIWNAATEKVTKKLVETLEASQFNHVYMMAKSGA 695

Query:   657 KGSPINISQMVACVG 671
             +G+   I Q+    G
Sbjct:   696 RGNIQQIRQLAGMRG 710

 Score = 58 (25.5 bits), Expect = 1.0e-48, Sum P(6) = 1.0e-48
 Identities = 16/64 (25%), Positives = 35/64 (54%)

Query:  1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             R+ V+ TG +   G E  +G     + + +V+   GIE A++ ++ E+ +  +  G+ I+
Sbjct:   970 RIKVQ-TGDKVYAGDELTEG-PINPHDLIKVK---GIEGAQLYLLQEVQKVYRMQGVEIN 1024

Query:  1167 KRHM 1170
              +H+
Sbjct:  1025 DKHI 1028

 Score = 40 (19.1 bits), Expect = 1.3e-32, Sum P(4) = 1.3e-32
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query:   395 PKNGEILVASTQD 407
             P+ GE+LVA  Q+
Sbjct:   816 PETGELLVAKNQE 828


>UNIPROTKB|P37871 [details] [associations]
            symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0046677
            GO:GO:0006351 EMBL:AL009126 GenomeReviews:AL009126_GR
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
            EMBL:D64127 EMBL:L24376 KO:K03046 ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 HOGENOM:HOG000218387 EMBL:L43593 PIR:G69698
            RefSeq:NP_387989.2 ProteinModelPortal:P37871 SMR:P37871
            DIP:DIP-49022N IntAct:P37871 PRIDE:P37871
            EnsemblBacteria:EBBACT00000003012 GeneID:935977 KEGG:bsu:BSU01080
            PATRIC:18971725 GenoList:BSU01080 BioCyc:BSUB:BSU01080-MONOMER
            Uniprot:P37871
        Length = 1199

 Score = 255 (94.8 bits), Expect = 3.3e-62, Sum P(5) = 3.3e-62
 Identities = 93/361 (25%), Positives = 166/361 (45%)

Query:   323 VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA 382
             VL NR P+LHR+ I      ++  R +R +  VC  YNADFDGD+M +HVP + EA+ EA
Sbjct:   410 VLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEA 469

Query:   383 LLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT--RKDTFYDRAAFS----LMCCYMGD 436
              +LM    N+  PK+G+ +V  +QD +  ++ +T  R     +   F      +  Y   
Sbjct:   470 RILMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTLERAGAVGEGMVFKNTDEALLAYQNG 529

Query:   437 GMD---RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
              +    RV +   + LK V  +T +Q   +LI     + V+  +  +   Y N+  ++  
Sbjct:   530 YVHLHTRVAVAANS-LKNVT-FTEEQRSKLLITTVGKL-VFNEILPESFPYMNEPTKSN- 585

Query:   494 DEEIRIETMCPNDGFVYFRNSEL---ISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGC 550
                  IE   P D F   + +++   I+ Q   A    G    + + + + +    TS  
Sbjct:   586 -----IEEKTP-DRFFLEKGADVKAVIAQQPINAPFKKGILGKIIAEIFKRFHITETSKM 639

Query:   551 MNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLK 610
             ++R+  L  ++    G ++G+ D+     L DK+  L     +V NV +K++  G +  +
Sbjct:   640 LDRMKNLGFKYSTKAGITVGVSDIVV---LDDKQEILEEAQSKVDNV-MKQFRRGLITEE 695

Query:   611 PGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACV 670
                +   ++ +   D++       GK  M SL   N   +MS  G++G+  N +Q+    
Sbjct:   696 ERYERVISIWSAAKDVIQ------GKL-MKSLDELNPIYMMSDSGARGNASNFTQLAGMR 748

Query:   671 G 671
             G
Sbjct:   749 G 749

 Score = 209 (78.6 bits), Expect = 3.3e-62, Sum P(5) = 3.3e-62
 Identities = 58/170 (34%), Positives = 88/170 (51%)

Query:   111 RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
             +P  +I+  + V P  +RP V +DG +   +D+ +  +R+I  N  L++ L     +   
Sbjct:   222 KPSWMILDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIV 281

Query:   171 LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
                   LQ  V   I++  RG P +    RPL      LKGKQGRFR NL GKRV+Y+GR
Sbjct:   282 QNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGR 341

Query:   231 TVISPDPNLKITEVAIPIRMARILTYP-------ERVSDHNIEKLRQCIQ 273
             +VI   P+LK+ +  +P  MA  L  P       E+   HNI+  ++ I+
Sbjct:   342 SVIVVGPHLKMYQCGLPKEMALELFKPFVMKELVEKGLAHNIKSAKRKIE 391

 Score = 170 (64.9 bits), Expect = 3.3e-62, Sum P(5) = 3.3e-62
 Identities = 39/86 (45%), Positives = 53/86 (61%)

Query:   902 VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIIT 961
             VE G A+G I AQSIGEPGTQ+T++TFH  GVA  +ITQG+PRI+E+           IT
Sbjct:   913 VEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELFEARNPKGQATIT 972

Query:   962 ----AELECNDNENAAR--VVKGRIE 981
                   +E N+  +  +  VV+G +E
Sbjct:   973 EIDGTVVEINEVRDKQQEIVVQGAVE 998

 Score = 139 (54.0 bits), Expect = 3.3e-62, Sum P(5) = 3.3e-62
 Identities = 25/52 (48%), Positives = 38/52 (73%)

Query:   705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
             + +SF  GL+  E+F  T G R+GL DTA+KTAD+GY++RRL+   +D+ I+
Sbjct:   763 IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIIR 814

 Score = 112 (44.5 bits), Expect = 3.3e-62, Sum P(5) = 3.3e-62
 Identities = 26/70 (37%), Positives = 44/70 (62%)

Query:  1178 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP 1237
             T R  +LGIT+  ++    S L  ASF++T   L +A++ G+ D + G+ E +I+G  +P
Sbjct:  1115 TGRPVLLGITKASLET--DSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVP 1172

Query:  1238 LGTGILKIRQ 1247
              GTG++K R+
Sbjct:  1173 AGTGMMKYRK 1182

 Score = 46 (21.3 bits), Expect = 8.3e-31, Sum P(4) = 8.3e-31
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query:   865 DDKSQILEEVTHKTSGITEKQLEVFIQTCFSRY 897
             DDK +ILEE   K   +  KQ    + T   RY
Sbjct:   667 DDKQEILEEAQSKVDNVM-KQFRRGLITEEERY 698

 Score = 39 (18.8 bits), Expect = 4.6e-39, Sum P(4) = 4.6e-39
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query:   658 GSPINISQMVACVGQQSVG 676
             GS + + + V  +  QS+G
Sbjct:   910 GSDVEVGEAVGIIAAQSIG 928


>UNIPROTKB|F1LQN7 [details] [associations]
            symbol:Polr1a "DNA-directed RNA polymerase" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF05000 SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677
            GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 PANTHER:PTHR19376:SF11 IPI:IPI00389616
            Ensembl:ENSRNOT00000013417 ArrayExpress:F1LQN7 Uniprot:F1LQN7
        Length = 1011

 Score = 578 (208.5 bits), Expect = 1.2e-59, Sum P(3) = 1.2e-59
 Identities = 154/436 (35%), Positives = 227/436 (52%)

Query:   174 WETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVI 233
             W  LQ  V    +SD+  +   M    P  G  Q L+ K+G FR ++ GKRV+Y  R+VI
Sbjct:   419 WIRLQSHVNIVFDSDMDKL---MLEKYP--GIRQILEKKEGLFRKHMMGKRVDYAARSVI 473

Query:   234 SPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTAR 293
              PD  +   E+ IP+  A  LTYP+ V+  N+++LRQ + NGP+ +PGA M+   DG+  
Sbjct:   474 CPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRT 533

Query:   294 VLYG---KFRNQLAVEL---KSGC-------IVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
              L       R  +A +L    +G        +V RH+++GD++L NRQP+LHR SI  HR
Sbjct:   534 ALSAVDATQREAVAKQLLTPSTGIPKPQGAKVVCRHVKNGDILLLNRQPTLHRPSIQAHR 593

Query:   341 ARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A I+P  + LR + + C  YNADFDGDEMN H PQ+E  R EA +L         PK+G+
Sbjct:   594 AHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQ 653

Query:   400 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG--DGMDRVDLPTPAILKPVELWTG 457
              L    QD + S   +T +  F+ R  + +   Y G  D + RV L  PAILKP  LWTG
Sbjct:   654 PLAGLIQDHMVSGANMTIRGCFFTREQY-MELVYRGLTDKVGRVKLFPPAILKPFPLWTG 712

Query:   458 KQLFS-VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSEL 516
             KQ+ S +LI         +NLT K K  S   ++ +       +     +  V  R  EL
Sbjct:   713 KQVVSTLLINIIPEDYTPLNLTGKAKIGSKAWVKEKPRPVPDFDPDSMCESQVIIREGEL 772

Query:   517 ISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH-GFSIGIDDVQ 575
             + G L KA  G+ +  GL       YG   +   +  LA+L   ++  + GF++G++D+ 
Sbjct:   773 LCGVLDKAHYGS-SAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDIL 831

Query:   576 PKKELSDKKGKLISEN 591
              K      + ++I E+
Sbjct:   832 VKPNADVMRQRIIEES 847

 Score = 116 (45.9 bits), Expect = 1.2e-59, Sum P(3) = 1.2e-59
 Identities = 33/92 (35%), Positives = 45/92 (48%)

Query:   627 LNRIREDAGKACM--G---SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
             +N    +  KACM  G     P  N+  +M Q G+KGS +N  Q+   +GQ  + GRR P
Sbjct:   897 VNHYSNEINKACMPFGLHRQFP-ENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPP 955

Query:   682 NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGL 713
                  +SLP F      P A GFV   F +G+
Sbjct:   956 LMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI 987

 Score = 46 (21.3 bits), Expect = 1.2e-59, Sum P(3) = 1.2e-59
 Identities = 19/70 (27%), Positives = 32/70 (45%)

Query:    93 FLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQ 152
             +LF  + D   E  +    P    +  I VPP   RP +   G Q   N  T  L+ +++
Sbjct:   306 YLFSGLDDIGPESSF---NPSMFFLDFIVVPPSRYRP-INRLGDQMFTNGQTVNLQAVMK 361

Query:   153 TNASLQQELV 162
              +A L ++L+
Sbjct:   362 -DAVLIRKLL 370


>TIGR_CMR|SO_0225 [details] [associations]
            symbol:SO_0225 "DNA-directed RNA polymerase, beta subunit"
            species:211586 "Shewanella oneidensis MR-1" [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
            EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
            HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 RefSeq:NP_715865.1 ProteinModelPortal:Q8EK73
            SMR:Q8EK73 PRIDE:Q8EK73 GeneID:1168108 KEGG:son:SO_0225
            PATRIC:23520143 Uniprot:Q8EK73
        Length = 1405

 Score = 207 (77.9 bits), Expect = 4.3e-55, Sum P(7) = 4.3e-55
 Identities = 53/155 (34%), Positives = 82/155 (52%)

Query:   104 EVLYLS-ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
             E  + S  +PE +I+  + V P  +RP V +DG +   +D+ +  +R+I  N  L++ L 
Sbjct:   225 EAFHTSGNKPEWMILKVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLD 284

Query:   163 EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
              A            LQ  V   +++  RG   +    RPL      +KGKQGRFR NL G
Sbjct:   285 LAAPDIIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLG 344

Query:   223 KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYP 257
             KRV+Y+GR+VI+  P L++ +  +P +MA  L  P
Sbjct:   345 KRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKP 379

 Score = 203 (76.5 bits), Expect = 4.3e-55, Sum P(7) = 4.3e-55
 Identities = 49/136 (36%), Positives = 77/136 (56%)

Query:   295 LYGKFRNQ-LAVELKSGC-IVDRHL-EDGDV---------VLFNRQPSLHRMSIMCHRAR 342
             +YGK   + LA  +K+   +V+R + E  DV         V+ NR P+LHR+ I      
Sbjct:   381 IYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHPVMLNRAPTLHRLGIQAFEPV 440

Query:   343 IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILV 402
             ++  + ++ +  VC  YNADFDGD+M +HVP T EA+ EA  LM   NN+ +P NGE ++
Sbjct:   441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPVI 500

Query:   403 ASTQDFLTSSFLITRK 418
               +QD +   +  +R+
Sbjct:   501 TPSQDVVLGLYYTSRE 516

 Score = 160 (61.4 bits), Expect = 4.3e-55, Sum P(7) = 4.3e-55
 Identities = 71/267 (26%), Positives = 116/267 (43%)

Query:   517 ISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQP 576
             +S  L    +G      L +   R  G   T    ++L     R+    G S+GIDD+  
Sbjct:   587 LSFDLVNQNMGKKQISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDDMVI 646

Query:   577 KKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGK 636
               E    K  L+++       ++ E  E   Q + G   A      + DI     E   K
Sbjct:   647 PAE----KYTLVAD----AEAEVLEIQE---QFQSGLVTAGERYNKVIDIWASANEKVSK 695

Query:   637 ACMGSLPWRNSPLIMSQCG--SKGSPINISQMVACVGQQSVGGR-RAPNGFIDRSLPHFP 693
             A M +L   ++  ++++ G   K +  N   M+A  G +    + R   G   R L   P
Sbjct:   696 AMMENL---STETVINRDGVEEKQASFNSIYMMADSGARGSAAQIRQLAGM--RGLMAKP 750

Query:   694 RKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDL 753
               +        VAN F  GL+  ++F  T G R+GL DTA+KTA++GY++RRL+   +DL
Sbjct:   751 DGSIIETP--IVAN-FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDL 807

Query:   754 SIQYDNSVRNAGGCIVQFLYGDDGMDP 780
              +  D+   + G  +   + G D ++P
Sbjct:   808 VVIEDDCGTHEGLTMKPLIEGGDVVEP 834

 Score = 137 (53.3 bits), Expect = 4.3e-55, Sum P(7) = 4.3e-55
 Identities = 35/107 (32%), Positives = 56/107 (52%)

Query:   844 FFEGQQDKLDKKIKFVEDIGWDDKSQ--ILEEVTHKTSGITEKQLEVFIQTCFSR--YRV 899
             F+ G +D L  +   +++  W DK +   ++EV  ++    +    V    C+ R   R 
Sbjct:   849 FYPGTEDVLAPRNTLLDE-AWCDKLEEHSIDEVIVRSVITCDTDFGV-CAACYGRDLARG 906

Query:   900 KRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIK 946
               +  G AIG + AQSIGEPGTQ+T++TFH  G AS    +   ++K
Sbjct:   907 HIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVK 953

 Score = 112 (44.5 bits), Expect = 4.3e-55, Sum P(7) = 4.3e-55
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query:  1178 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP 1237
             TF  E+LGIT+  +    +S +  ASF++T   L  A+V G+ D + G+ E +I+G  +P
Sbjct:  1301 TFERELLGITKASLAT--ESFISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIP 1358

Query:  1238 LGTG 1241
              GTG
Sbjct:  1359 AGTG 1362

 Score = 48 (22.0 bits), Expect = 4.3e-55, Sum P(7) = 4.3e-55
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query:   937 NITQGVPRIKEIINGAKRISTPIITAEL 964
             +IT G+PR+ ++   A++   P I AE+
Sbjct:  1133 DITGGLPRVADLFE-ARKPKEPAILAEI 1159

 Score = 44 (20.5 bits), Expect = 4.3e-55, Sum P(7) = 4.3e-55
 Identities = 7/38 (18%), Positives = 21/38 (55%)

Query:  1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1173
             ++ +  GI      I++E+ +  +  G+ I+ +H+ ++
Sbjct:  1219 DILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVI 1256


>TIGR_CMR|SPO_3507 [details] [associations]
            symbol:SPO_3507 "DNA-directed RNA polymerase, beta'
            subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
            "cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
            HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
            KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 RefSeq:YP_168702.1 ProteinModelPortal:Q5LMQ6
            SMR:Q5LMQ6 PRIDE:Q5LMQ6 GeneID:3196349 KEGG:sil:SPO3507
            PATRIC:23380483 Uniprot:Q5LMQ6
        Length = 1413

 Score = 226 (84.6 bits), Expect = 8.3e-54, Sum P(8) = 8.3e-54
 Identities = 66/202 (32%), Positives = 105/202 (51%)

Query:    60 ESLQEFASAI---THTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLI 116
             E+++E  S I      ++ +A +  AT  L P  ++   KR+   +   L    RPE ++
Sbjct:   186 EAIREMLSQIDLEAEAEQLRADLAEATGELKPKKII---KRLKVVE-SFLESGNRPEWMV 241

Query:   117 ITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWET 176
             +T I V P  +RP V +DG +   +D+ +  +R+I  N  L++ L+E  +    +   + 
Sbjct:   242 LTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR-LIELRAPDIIVRNEKR 300

Query:   177 -LQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISP 235
              LQ  V    ++  RG   +    RPL      LKGKQGRFR NL GKRV+++GR+VI  
Sbjct:   301 MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT 360

Query:   236 DPNLKITEVAIPIRMARILTYP 257
              P LK+ +  +P +MA  L  P
Sbjct:   361 GPELKLHQCGLPKKMALELFKP 382

 Score = 196 (74.1 bits), Expect = 8.3e-54, Sum P(8) = 8.3e-54
 Identities = 38/105 (36%), Positives = 65/105 (61%)

Query:   312 IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMH 371
             I+D  + +  V+L NR P+LHR+ I      ++  + ++ +  VC+ +NADFDGD+M +H
Sbjct:   414 ILDEVIREHPVLL-NRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVH 472

Query:   372 VPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
             VP + EA+ EA +LM   NN+ +P NG  ++  +QD +   + +T
Sbjct:   473 VPLSLEAQLEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYLT 517

 Score = 124 (48.7 bits), Expect = 8.3e-54, Sum P(8) = 8.3e-54
 Identities = 28/58 (48%), Positives = 35/58 (60%)

Query:   879 SGITEKQLEVFIQTCFSR--YRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 934
             S +T +  E     C+ R   R   V  G A+G I AQSIGEPGTQ+T++TFH  GVA
Sbjct:   881 SPLTCESEEGVCAMCYGRDLARGTMVNQGEAVGIIAAQSIGEPGTQLTMRTFHIGGVA 938

 Score = 123 (48.4 bits), Expect = 8.3e-54, Sum P(8) = 8.3e-54
 Identities = 22/52 (42%), Positives = 37/52 (71%)

Query:   705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
             + ++F  GL+  E+F  T G R+GL DTA+KTA++GY++RRL+   +D  ++
Sbjct:   756 IISNFKEGLTVLEYFNSTHGARKGLSDTALKTANSGYLTRRLVDVAQDCIVR 807

 Score = 107 (42.7 bits), Expect = 8.3e-54, Sum P(8) = 8.3e-54
 Identities = 24/59 (40%), Positives = 38/59 (64%)

Query:  1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             +LGIT+  +Q   +S +  ASF++T   L  ASV G+ D++ G+ E +I+G  +P GTG
Sbjct:  1301 LLGITKASLQT--RSFISAASFQETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTG 1357

 Score = 61 (26.5 bits), Expect = 8.3e-54, Sum P(8) = 8.3e-54
 Identities = 11/48 (22%), Positives = 26/48 (54%)

Query:  1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
             ++   LG+EA    ++ E+ E  +  G+ I+ +H+ ++   M  + E+
Sbjct:  1214 DILSILGVEALANYMVKEVQEVYRLQGVKINDKHIEVIVRQMLQKWEI 1261

 Score = 52 (23.4 bits), Expect = 8.3e-54, Sum P(8) = 8.3e-54
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query:   932 GVASMNITQGVPRIKEIINGAKRISTPIITAELE 965
             G  + +IT G+PR+ E+   A+R     I AE++
Sbjct:  1122 GAKTKDITGGLPRVAELFE-ARRPKDHAIIAEID 1154

 Score = 49 (22.3 bits), Expect = 8.3e-54, Sum P(8) = 8.3e-54
 Identities = 29/125 (23%), Positives = 55/125 (44%)

Query:   566 GFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL----QLKPGCDAAQTLEA 621
             G S G DD+     + D K  ++ E  +      ++Y +G +    +     DA      
Sbjct:   637 GISFGKDDMV----IPDDKWGIVDETRDQVKDFEQQYMDGLITQGEKYNKVVDAWSKCND 692

Query:   622 VITD-ILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
              +T+ +++ I  D      G++   NS  +M+  G++GS   ++QM    G + +  +  
Sbjct:   693 RVTEAMMSTISADKRDE-NGAVMEPNSVYMMAHSGARGS---VTQMKQLGGMRGLMAK-- 746

Query:   681 PNGFI 685
             PNG I
Sbjct:   747 PNGDI 751

 Score = 49 (22.3 bits), Expect = 4.4e-45, Sum P(7) = 4.4e-45
 Identities = 25/110 (22%), Positives = 44/110 (40%)

Query:   904 AGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAE 963
             A   +G + A  I  PGT+  L       VA+  +     R+ + I+ A  + T  + + 
Sbjct:   833 AERVLGRVAADDILRPGTEEVL-------VAAGQLID--ERMADAIHEAG-VQTSRVRSP 882

Query:   964 LECNDNENAARVVKGR--IEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
             L C   E    +  GR     T++ Q  +++ I+    +      L M T
Sbjct:   883 LTCESEEGVCAMCYGRDLARGTMVNQ-GEAVGIIAAQSIGEPGTQLTMRT 931

 Score = 38 (18.4 bits), Expect = 4.5e-36, Sum P(6) = 4.5e-36
 Identities = 6/21 (28%), Positives = 13/21 (61%)

Query:   656 SKGSPINISQMVACVGQQSVG 676
             ++G+ +N  + V  +  QS+G
Sbjct:   901 ARGTMVNQGEAVGIIAAQSIG 921


>UNIPROTKB|P0A8T7 [details] [associations]
            symbol:rpoC "RNA polymerase, beta' subunit" species:83333
            "Escherichia coli K-12" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0016779
            "nucleotidyltransferase activity" evidence=IEA] [GO:0016740
            "transferase activity" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005737 GO:GO:0016020
            EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351 EMBL:U00006
            Gene3D:2.40.40.20 InterPro:IPR009010 PDB:3IYD PDBsum:3IYD
            GO:GO:0003899 EMBL:V00339 eggNOG:COG0086 PDB:3LU0 PDBsum:3LU0
            EMBL:V00340 EMBL:M38293 EMBL:M38303 KO:K03046 HOGENOM:HOG000218386
            OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 EMBL:M38305
            EMBL:M38288 PIR:A00695 RefSeq:NP_418415.1 RefSeq:YP_491473.1
            PDB:2AUK PDB:2LMC PDBsum:2AUK PDBsum:2LMC ProteinModelPortal:P0A8T7
            SMR:P0A8T7 DIP:DIP-35803N IntAct:P0A8T7 MINT:MINT-1220667
            PhosSite:P010445 PaxDb:P0A8T7 PRIDE:P0A8T7
            EnsemblBacteria:EBESCT00000001546 EnsemblBacteria:EBESCT00000001547
            EnsemblBacteria:EBESCT00000001548 EnsemblBacteria:EBESCT00000018189
            GeneID:12933965 GeneID:948487 KEGG:ecj:Y75_p3209 KEGG:eco:b3988
            PATRIC:32123497 EchoBASE:EB0888 EcoGene:EG10895
            BioCyc:EcoCyc:RPOC-MONOMER BioCyc:ECOL316407:JW3951-MONOMER
            BioCyc:MetaCyc:RPOC-MONOMER EvolutionaryTrace:P0A8T7
            Genevestigator:P0A8T7 Uniprot:P0A8T7
        Length = 1407

 Score = 209 (78.6 bits), Expect = 4.0e-53, Sum P(5) = 4.0e-53
 Identities = 52/147 (35%), Positives = 80/147 (54%)

Query:   111 RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
             +PE +I+T + V P  +RP V +DG +   +D+ +  +R+I  N  L++ L  A      
Sbjct:   233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV 292

Query:   171 LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
                   LQ  V   +++  RG   +    RPL      +KGKQGRFR NL GKRV+Y+GR
Sbjct:   293 RNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGR 352

Query:   231 TVISPDPNLKITEVAIPIRMARILTYP 257
             +VI+  P L++ +  +P +MA  L  P
Sbjct:   353 SVITVGPYLRLHQCGLPKKMALELFKP 379

 Score = 208 (78.3 bits), Expect = 4.0e-53, Sum P(5) = 4.0e-53
 Identities = 42/106 (39%), Positives = 65/106 (61%)

Query:   312 IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMH 371
             I+D  + +  V+L NR P+LHR+ I      ++  + ++ +  VC  YNADFDGD+M +H
Sbjct:   411 ILDEVIREHPVLL-NRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVH 469

Query:   372 VPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR 417
             VP T EA+ EA  LM   NN+ +P NGE ++  +QD +   + +TR
Sbjct:   470 VPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR 515

 Score = 161 (61.7 bits), Expect = 4.0e-53, Sum P(5) = 4.0e-53
 Identities = 60/218 (27%), Positives = 102/218 (46%)

Query:   566 GFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITD 625
             G S+GIDD+     + +KK ++ISE       ++ E  E   Q + G   A      + D
Sbjct:   636 GASVGIDDMV----IPEKKHEIISE----AEAEVAEIQE---QFQSGLVTAGERYNKVID 684

Query:   626 ILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQ--MVACVGQQSVGGR-RAPN 682
             I     +   KA M +L    +  ++++ G +   ++ +   M+A  G +    + R   
Sbjct:   685 IWAAANDRVSKAMMDNL---QTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLA 741

Query:   683 GFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYM 742
             G   R L   P  +         AN F  GL+  ++F  T G R+GL DTA+KTA++GY+
Sbjct:   742 GM--RGLMAKPDGSIIETP--ITAN-FREGLNVLQYFISTHGARKGLADTALKTANSGYL 796

Query:   743 SRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDP 780
             +RRL+   +DL +  D+   + G  +   + G D  +P
Sbjct:   797 TRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEP 834

 Score = 125 (49.1 bits), Expect = 4.0e-53, Sum P(5) = 4.0e-53
 Identities = 28/66 (42%), Positives = 39/66 (59%)

Query:   893 CFSR--YRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN 950
             C+ R   R   +  G AIG I AQSIGEPGTQ+T++TFH  G AS    +   ++K    
Sbjct:   898 CYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKN--K 955

Query:   951 GAKRIS 956
             G+ ++S
Sbjct:   956 GSIKLS 961

 Score = 101 (40.6 bits), Expect = 4.0e-53, Sum P(5) = 4.0e-53
 Identities = 23/64 (35%), Positives = 39/64 (60%)

Query:  1178 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP 1237
             T+  ++LGIT+  +    +S +  ASF++T   L  A+V G+ D + G+ E +I+G  +P
Sbjct:  1301 TYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIP 1358

Query:  1238 LGTG 1241
              GTG
Sbjct:  1359 AGTG 1362

 Score = 53 (23.7 bits), Expect = 3.4e-48, Sum P(5) = 3.4e-48
 Identities = 18/89 (20%), Positives = 47/89 (52%)

Query:  1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL--GITRF--GI 1191
             ++ +  G+ A    I++E+ +  +  G+ I+ +H+ ++   M  +  ++  G + F  G 
Sbjct:  1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEG- 1277

Query:  1192 QKMDKSVLMLASFEKTADHLFNASVNGRD 1220
             ++++ S + +A+ E  A+    A+ + RD
Sbjct:  1278 EQVEYSRVKIANRELEANGKVGATYS-RD 1305

 Score = 51 (23.0 bits), Expect = 1.6e-45, Sum P(5) = 1.6e-45
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query:   937 NITQGVPRIKEIINGAKRISTPIITAEL 964
             +IT G+PR+ ++   A+R   P I AE+
Sbjct:  1133 DITGGLPRVADLFE-ARRPKEPAILAEI 1159


>UNIPROTKB|P0A674 [details] [associations]
            symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
            species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0040007 "growth" evidence=IMP] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005886 GO:GO:0040007
            GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
            GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006351 EMBL:BX842574
            Gene3D:2.40.40.20 InterPro:IPR009010 DrugBank:DB01045 GO:GO:0003899
            eggNOG:COG0086 EMBL:L27989 KO:K03046 HOGENOM:HOG000218386
            OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G70535
            RefSeq:NP_215182.1 RefSeq:NP_335108.1 RefSeq:YP_006514010.1
            ProteinModelPortal:P0A674 SMR:P0A674 IntAct:P0A674 PRIDE:P0A674
            EnsemblBacteria:EBMYCT00000001410 EnsemblBacteria:EBMYCT00000072799
            GeneID:13318555 GeneID:888177 GeneID:925980 KEGG:mtc:MT0696
            KEGG:mtu:Rv0668 KEGG:mtv:RVBD_0668 PATRIC:18123251
            TubercuList:Rv0668 DrugBank:DB01201 Uniprot:P0A674
        Length = 1316

 Score = 201 (75.8 bits), Expect = 6.0e-53, Sum P(5) = 6.0e-53
 Identities = 55/158 (34%), Positives = 85/158 (53%)

Query:   112 PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSL 171
             P  +++  + V P  +RP V +DG +   +D+ +  +R+I  N  L++ L++  +  + +
Sbjct:   309 PMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR-LIDLGAP-EII 366

Query:   172 AGWET--LQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
                E   LQ  V    ++  RG P +    RPL      LKGKQGRFR NL GKRV+Y+G
Sbjct:   367 VNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGKRVDYSG 426

Query:   230 RTVISPDPNLKITEVAIPIRMARILTYP---ERVSDHN 264
             R+VI   P LK+ +  +P  MA  L  P   +R+ D N
Sbjct:   427 RSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLN 464

 Score = 188 (71.2 bits), Expect = 6.0e-53, Sum P(5) = 6.0e-53
 Identities = 35/94 (37%), Positives = 56/94 (59%)

Query:   323 VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA 382
             VL NR P+LHR+ I      ++  + ++ +  VC  +NADFDGD+M +H+P + EA+ EA
Sbjct:   496 VLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQMAVHLPLSAEAQAEA 555

Query:   383 LLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
              +LM   NN+ +P +G  L     D +T  + +T
Sbjct:   556 RILMLSSNNILSPASGRPLAMPRLDMVTGLYYLT 589

 Score = 164 (62.8 bits), Expect = 6.0e-53, Sum P(5) = 6.0e-53
 Identities = 36/89 (40%), Positives = 52/89 (58%)

Query:   892 TCFSRYRV--KRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII 949
             TC+ R     K V+ G A+G + AQSIGEPGTQ+T++TFH  GV   +IT G+PR++E+ 
Sbjct:   977 TCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVGE-DITGGLPRVQELF 1035

Query:   950 NG-AKRISTPI--ITAELECNDNENAARV 975
                  R   PI  +T  +   D E   ++
Sbjct:  1036 EARVPRGKAPIADVTGRVRLEDGERFYKI 1064

 Score = 142 (55.0 bits), Expect = 6.0e-53, Sum P(5) = 6.0e-53
 Identities = 26/66 (39%), Positives = 46/66 (69%)

Query:   705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
             V +SF  GL+  E+F +T G R+GL DTA++TAD+GY++RRL+   +D+ ++ ++  +  
Sbjct:   836 VKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVR-EHDCQTE 894

Query:   765 GGCIVQ 770
              G +V+
Sbjct:   895 RGIVVE 900

 Score = 106 (42.4 bits), Expect = 6.0e-53, Sum P(5) = 6.0e-53
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query:  1180 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLG 1239
             R  ++GIT+  +     S L  ASF++T   L +A++N R D++ G+ E +I+G  +P G
Sbjct:  1204 RPVLMGITKASLAT--DSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPAG 1261

Query:  1240 TGILKIRQRDAVPP 1253
             TGI + R   AV P
Sbjct:  1262 TGINRYRNI-AVQP 1274

 Score = 66 (28.3 bits), Expect = 7.8e-49, Sum P(5) = 7.8e-49
 Identities = 26/101 (25%), Positives = 51/101 (50%)

Query:  1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             R+L +G  ++  +G + ++G  +   H  EV +  G    +I ++ E+ E  +A G+SI 
Sbjct:  1097 RVLSDGDHVE--VGQQLMEG--SADPH--EVLRVQGPREVQIHLVREVQEVYRAQGVSIH 1150

Query:  1167 KRHMMLLADLMTFRGEVL--GITRFGIQKMDKSVLMLASFE 1205
              +H+ ++   M  R  ++  G T F    +  S++  A FE
Sbjct:  1151 DKHIEVIVRQMLRRVTIIDSGSTEF----LPGSLIDRAEFE 1187

 Score = 41 (19.5 bits), Expect = 4.7e-09, Sum P(3) = 4.7e-09
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query:   369 NMHVPQTEEARTEALLLMGVQNNLCTPKNG 398
             N+ V  TEEAR  A  +   ++   +P  G
Sbjct:  1269 NIAVQPTEEARAAAYTIPSYEDQYYSPDFG 1298

 Score = 37 (18.1 bits), Expect = 4.7e-30, Sum P(4) = 4.7e-30
 Identities = 10/49 (20%), Positives = 22/49 (44%)

Query:   467 PHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSE 515
             P A++   V L   E+ Y   ++  +G EE+  + +        F++ +
Sbjct:  1045 PIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKISKRQRLRVFKHED 1093

 Score = 37 (18.1 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query:   283 RMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
             R+ ++ DG+ RVL      ++  +L  G   D H
Sbjct:  1087 RVFKHEDGSERVLSDGDHVEVGQQLMEGS-ADPH 1119


>UNIPROTKB|F1NJE0 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF04998 Pfam:PF05000 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
            GO:GO:0006351 GO:GO:0003899 PANTHER:PTHR19376:SF11
            GeneTree:ENSGT00550000074861 EMBL:AADN02014782 EMBL:AADN02014783
            IPI:IPI00819994 Ensembl:ENSGALT00000037150 OMA:QKKMARV
            ArrayExpress:F1NJE0 Uniprot:F1NJE0
        Length = 917

 Score = 330 (121.2 bits), Expect = 6.5e-53, Sum P(4) = 6.5e-53
 Identities = 74/160 (46%), Positives = 98/160 (61%)

Query:   627 LNRIREDAGKACM--G---SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
             +N    +  K CM  G   S P  N  L M Q G+KGS +N  Q+   +GQ  + GRR P
Sbjct:    71 VNNYNNEVNKVCMPFGLHRSFPENNLQL-MVQSGAKGSTVNTVQISCLLGQIELEGRRPP 129

Query:   682 NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
                  +SLP F      P++ GFV   F +G+  +EFFFH M GREGLVDTAVKT+ +GY
Sbjct:   130 LMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGY 189

Query:   742 MSRR--LIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
             + R   +IK LE L +QYD +VR++ G +VQFLYG+DG+D
Sbjct:   190 LQRNRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 229

 Score = 183 (69.5 bits), Expect = 6.5e-53, Sum P(4) = 6.5e-53
 Identities = 37/94 (39%), Positives = 58/94 (61%)

Query:   903 EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK-RISTPIIT 961
             + G A+G + AQSIGEP TQMTL TFHFAG   MN+T G+PR++EI+  A   I TP+++
Sbjct:   410 DPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMS 469

Query:   962 AE-LECNDNENAARVVKGRIEKTLLGQVAKSIKI 994
                L         + +K ++ +  L +V + +++
Sbjct:   470 VPVLGTKKAHKKVKQLKKQLTRVCLAEVLQKVEL 503

 Score = 182 (69.1 bits), Expect = 6.5e-53, Sum P(4) = 6.5e-53
 Identities = 46/141 (32%), Positives = 71/141 (50%)

Query:  1108 LLVEGTGLQAVMGAEGI-DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  EG  L  +     I D  +  SN I  + +  GIE+A   +I EI +    +G+ +D
Sbjct:   775 LHTEGINLAELFRYSDILDLNRLYSNDIHAMAKNYGIESALRVVIKEIKDVFAVYGIVVD 834

Query:  1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
              RH+ L+AD M F G    + RFGIQ    S L   +FE +   L  A++ G  D +   
Sbjct:   835 PRHLSLVADYMCFEGVYKPMNRFGIQS-SSSPLQQMTFETSYKFLKEATMMGAHDELRSP 893

Query:  1227 SECIIMGIPMPLGTGILKIRQ 1247
             S C+++G  +  GTG+  ++Q
Sbjct:   894 SACLVLGKVVKGGTGLFDLKQ 914

 Score = 45 (20.9 bits), Expect = 6.7e-23, Sum P(4) = 6.7e-23
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query:   567 FSIGIDDVQ-PKKE-LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAV 622
             F  G D +  PK + L  ++   I++NYEV   K    NE   +++    A Q  +A+
Sbjct:   221 FLYGEDGLDIPKTQFLQPEQFPFIADNYEVIQ-KTNHLNEALARMESH-QAKQQFKAI 276

 Score = 45 (20.9 bits), Expect = 6.7e-23, Sum P(4) = 6.7e-23
 Identities = 27/121 (22%), Positives = 56/121 (46%)

Query:   741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF-DRL--- 796
             + +++  KA+     ++ NSV+  GG +   L+    M     +   GE +N  D     
Sbjct:   267 HQAKQQFKAIRKWWARHQNSVQREGGFL---LFSQKKMASVKTQIPGGESINGRDPATLQ 323

Query:   797 LMKVKATCPPAGQR-YLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFE-GQQDKLDK 854
             L+K+        +R YL  ++ ++  +  LA +  +S    +  S+ + FE G +D ++K
Sbjct:   324 LLKMWYELDEKKRRKYL--KKANKCPDPSLAVWRPDS----YFASVSETFESGVEDYINK 377

Query:   855 K 855
             +
Sbjct:   378 R 378

 Score = 43 (20.2 bits), Expect = 9.6e-23, Sum P(3) = 9.6e-23
 Identities = 23/82 (28%), Positives = 34/82 (41%)

Query:   223 KRVEYTGRTVISPDPNLKITEVAIPIRMARIL-TYPERVSDHNIEKLRQCIQNGPDKYPG 281
             KR +Y  +    PDP+L +         A +  T+   V D+ I K R+C   G    P 
Sbjct:   335 KRRKYLKKANKCPDPSLAVWRP--DSYFASVSETFESGVEDY-INK-RECKSRGGCMQPA 390

Query:   282 ARMIRYPDGTARVLYGKFRNQL 303
                 R  D    +LY K++  L
Sbjct:   391 LSSDRLKD----LLYLKWQRSL 408

 Score = 42 (19.8 bits), Expect = 6.5e-53, Sum P(4) = 6.5e-53
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query:   571 IDDVQPKKELSDKKGKLISENYEVCNVKI 599
             I+D+  K E   K+ K+I ++ + C +++
Sbjct:     1 IEDILVKPEADRKRHKIIKKSSQ-CGIEV 28

 Score = 39 (18.8 bits), Expect = 8.8e-24, Sum P(3) = 8.8e-24
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query:   912 GAQSIGEPGTQMTLKT-FHFAGVASM 936
             G QS   P  QMT +T + F   A+M
Sbjct:   858 GIQSSSSPLQQMTFETSYKFLKEATM 883

 Score = 37 (18.1 bits), Expect = 4.0e-22, Sum P(3) = 4.0e-22
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query:   373 PQTEEARTEALLLMGVQNNLCTPKNGEILVAS 404
             P     R + LL +  Q +LC P     L+A+
Sbjct:   389 PALSSDRLKDLLYLKWQRSLCDPGEAVGLLAA 420

 Score = 37 (18.1 bits), Expect = 7.3e-08, Sum P(3) = 7.3e-08
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query:   349 LRFNESVCNPYNADFD-GDEMNMHVPQTEEARTE 381
             +R N+     Y ++ + G+E     P+ EEA +E
Sbjct:   622 MRRNQEEEVDYESEEENGEENTAENPEDEEAESE 655


>TIGR_CMR|CJE_0529 [details] [associations]
            symbol:CJE_0529 "DNA-directed RNA polymerase, beta'
            subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
            EMBL:CP000025 GenomeReviews:CP000025_GR Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
            HOGENOM:HOG000218386 ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
            RefSeq:YP_178547.1 ProteinModelPortal:Q5HVY8 SMR:Q5HVY8
            STRING:Q5HVY8 GeneID:3231290 KEGG:cjr:CJE0529 PATRIC:20042780
            OMA:VIAEWDP BioCyc:CJEJ195099:GJC0-544-MONOMER Uniprot:Q5HVY8
        Length = 1517

 Score = 213 (80.0 bits), Expect = 1.1e-52, Sum P(9) = 1.1e-52
 Identities = 62/201 (30%), Positives = 103/201 (51%)

Query:    64 EFASAITHTKESKAAVNVATY---ILNPVNVL--FLFKRMT-DTDCEVLYLSERPEKLII 117
             +  + +   KE   A N       I+  + V+  FL   +  +TD +   +  RPE ++I
Sbjct:   203 DLVALLNQLKEEMGATNSEAKKKTIIKRLKVVENFLNSNLNANTDSDEA-VPNRPEWMMI 261

Query:   118 TNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWET- 176
             TN+ V P  +RP V +DG +   +D+ +  +R+I  N  L++ L+E ++    +   +  
Sbjct:   262 TNLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNTRLKK-LMELDAPEIIIRNEKRM 320

Query:   177 LQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPD 236
             LQ  V    ++  R         RPL    + +KGKQGRFR NL GKRV+++GR+VI   
Sbjct:   321 LQEAVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVG 380

Query:   237 PNLKITEVAIPIRMARILTYP 257
             P L++ +  +P +MA  L  P
Sbjct:   381 PKLRMDQCGLPKKMALELFKP 401

 Score = 172 (65.6 bits), Expect = 1.1e-52, Sum P(9) = 1.1e-52
 Identities = 32/97 (32%), Positives = 57/97 (58%)

Query:   320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
             G  V+ NR P+LH++SI      ++  + ++ +  VC  +NADFDGD+M +HVP ++EA 
Sbjct:   440 GHPVMLNRAPTLHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAI 499

Query:   380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
              E  +LM    N+  P +G+ +   +QD +   + ++
Sbjct:   500 AECKVLMLSSMNILLPASGKSVTVPSQDMVLGIYYLS 536

 Score = 134 (52.2 bits), Expect = 1.1e-52, Sum P(9) = 1.1e-52
 Identities = 42/115 (36%), Positives = 59/115 (51%)

Query:   831 ESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDD-KSQILEEVTHKT----SGITEKQ 885
             E+  E  L   R   E   D +   + F E    D+ K++IL E   K+    + IT K 
Sbjct:   831 ETLEERILG--RVLAEDVIDPITNSVLFAEGTLMDEEKAKILGESGIKSVNIRTPITCKA 888

Query:   886 LEVFIQTCF--SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNI 938
              +     C+  +    K V+ G A+G I AQSIGEPGTQ+TL+TFH  G AS ++
Sbjct:   889 KKGICAKCYGINLGEGKLVKPGEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDL 943

 Score = 126 (49.4 bits), Expect = 1.1e-52, Sum P(9) = 1.1e-52
 Identities = 23/61 (37%), Positives = 40/61 (65%)

Query:   705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
             + ++F  GL+  E+F  T G R+GL DTA+KTA+ GY++R+LI   +++ I  ++   + 
Sbjct:   757 IISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKLIDVAQNVKITIEDCGTHE 816

Query:   765 G 765
             G
Sbjct:   817 G 817

 Score = 106 (42.4 bits), Expect = 1.1e-52, Sum P(9) = 1.1e-52
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query:  1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
             +LG+TR  I     SV+  ASF++T   L  AS+ G+ D +E + E +I+G  +P+GTG+
Sbjct:  1448 LLGVTRAAIGS--DSVISAASFQETTKVLTEASIAGKFDYLEDLKENVILGRMIPVGTGL 1505

Query:  1243 -----LKIRQRD 1249
                  LK+++++
Sbjct:  1506 YGEQNLKLKEQE 1517

 Score = 63 (27.2 bits), Expect = 1.1e-52, Sum P(9) = 1.1e-52
 Identities = 31/138 (22%), Positives = 56/138 (40%)

Query:   534 LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYE 593
             L   + +  G   T+  ++RL  L   +    G SI I D+      +DK+  +     +
Sbjct:   613 LVDYVYKQGGLEITASFLDRLKNLGFEYATKAGISISIADIIVP---NDKQKAIDEAKKQ 669

Query:   594 VCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQ 653
             V  ++   YN G +    G +    +  +     N + ++  K         NS  +M+ 
Sbjct:   670 VREIQ-NSYNLGLIT--SG-ERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMAD 725

Query:   654 CGSKGSPINISQMVACVG 671
              G++GS   ISQ+ A  G
Sbjct:   726 SGARGSAAQISQLAAMRG 743

 Score = 60 (26.2 bits), Expect = 1.1e-52, Sum P(9) = 1.1e-52
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query:  1131 SNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL--GITR 1188
             S+H  +V + LG +A    +I EI +  +  G+ I  +H+ ++   M  + +V+  G T+
Sbjct:  1358 SSH--DVLKILGEKALHYYLISEIQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTK 1415

Query:  1189 F 1189
             F
Sbjct:  1416 F 1416

 Score = 53 (23.7 bits), Expect = 1.1e-52, Sum P(9) = 1.1e-52
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query:   931 AGVASMNITQGVPRIKEIINGAKRISTPIITAELE 965
             A   S +IT G+PR+ E+    K  +  +I AE++
Sbjct:  1270 AAAKSKDITGGLPRVSELFEARKPKNAAVI-AEID 1303

 Score = 44 (20.5 bits), Expect = 1.1e-52, Sum P(9) = 1.1e-52
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query:    21 KCSTMASKAVKCPRCGY--INGMVKKA 45
             K   M  K VKC +CG    N  V+++
Sbjct:    75 KYKKMRFKGVKCEKCGVEVANSKVRRS 101


>TIGR_CMR|CPS_4768 [details] [associations]
            symbol:CPS_4768 "DNA-directed RNA polymerase, beta'
            subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
            EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
            HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 RefSeq:YP_271412.1 ProteinModelPortal:Q47UW0
            SMR:Q47UW0 STRING:Q47UW0 PRIDE:Q47UW0 GeneID:3519900
            KEGG:cps:CPS_4768 PATRIC:21472353
            BioCyc:CPSY167879:GI48-4774-MONOMER Uniprot:Q47UW0
        Length = 1406

 Score = 210 (79.0 bits), Expect = 1.5e-52, Sum P(6) = 1.5e-52
 Identities = 51/149 (34%), Positives = 83/149 (55%)

Query:   111 RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQ--ELVEANSAF 168
             +PE +I+  + + P  +RP V +DG +   +D+ +  +R+I  N  L++  +LV  +   
Sbjct:   233 KPEWMIMNVLPILPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIV 292

Query:   169 KSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYT 228
             ++      LQ  V   +++  RG   +    RPL      +KGKQGRFR NL GKRV+Y+
Sbjct:   293 RNEK--RMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS 350

Query:   229 GRTVISPDPNLKITEVAIPIRMARILTYP 257
             GR+VI+  P LK+ +  +P +MA  L  P
Sbjct:   351 GRSVITVGPTLKLHQCGLPKKMALELFKP 379

 Score = 205 (77.2 bits), Expect = 1.5e-52, Sum P(6) = 1.5e-52
 Identities = 41/106 (38%), Positives = 63/106 (59%)

Query:   312 IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMH 371
             ++D  + +  V+L NR P+LHR+ I      ++  + +  +  VC  YNADFDGD+M +H
Sbjct:   411 VLDEVIREHPVML-NRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVH 469

Query:   372 VPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR 417
             VP T EA+ EA  LM   NN+  P NGE ++  +QD +   + +TR
Sbjct:   470 VPLTIEAQMEARTLMMSTNNVLAPANGEPIIVPSQDVVLGLYYLTR 515

 Score = 150 (57.9 bits), Expect = 1.5e-52, Sum P(6) = 1.5e-52
 Identities = 61/220 (27%), Positives = 107/220 (48%)

Query:   566 GFSIGIDDVQPKKELSDKKGKLISENY-EVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
             G S+GIDD+     + + K  ++ ++  EV  ++  ++++G +       A +    VI 
Sbjct:   636 GCSVGIDDMV----IPEAKYTIVEDSEAEVAEIQA-QFDQGLVT------AGEKYNKVI- 683

Query:   625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGS--KGSPINISQMVACVGQQSVGGR-RAP 681
             DI +   E   KA M +L   +  ++M++ G   +    N   M+A  G +    + R  
Sbjct:   684 DIWSSANEKVSKAMMDNL---SKEMVMNRDGEMEEQDSFNSIFMMADSGARGSAAQIRQL 740

Query:   682 NGFIDRSLPHFPRKAK-EPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
              G   R L   P  +  E   K   AN F  GL+  ++F  T G R+GL DTA+KTA++G
Sbjct:   741 AGM--RGLMAKPDGSIIETPIK---AN-FREGLTVLQYFISTHGARKGLADTALKTANSG 794

Query:   741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDP 780
             Y++RRL+   +DL +   +   + G  +   + G D ++P
Sbjct:   795 YLTRRLVDVAQDLVVTNHDCGTHDGLLMTPLIEGGDVVEP 834

 Score = 126 (49.4 bits), Expect = 1.5e-52, Sum P(6) = 1.5e-52
 Identities = 25/56 (44%), Positives = 34/56 (60%)

Query:   893 CFSR--YRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIK 946
             C+ R   R   +  G AIG + AQSIGEPGTQ+T++TFH  G AS    +   ++K
Sbjct:   898 CYGRDLARGHMINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRATAESSVQVK 953

 Score = 93 (37.8 bits), Expect = 1.5e-52, Sum P(6) = 1.5e-52
 Identities = 21/60 (35%), Positives = 37/60 (61%)

Query:  1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             +++GIT+  +    +S +  ASF++T   L  A+V G+ D + G+ E +I+G  +P GTG
Sbjct:  1304 QMMGITKASLAT--ESFISAASFQETTRVLTEAAVAGKKDGLRGLKENVIVGRLIPAGTG 1361

 Score = 59 (25.8 bits), Expect = 1.5e-52, Sum P(6) = 1.5e-52
 Identities = 19/78 (24%), Positives = 37/78 (47%)

Query:  1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             RLL    G   + G    DG   +S H  ++ +  G+      I++E+ E  +  G+ I+
Sbjct:  1193 RLLNIYEGEPVIKGEVIADG--PESPH--DILRLRGVAPVANYIVNEVQEVYRLQGVKIN 1248

Query:  1167 KRHMMLLADLMTFRGEVL 1184
              +H+ ++   M  + E+L
Sbjct:  1249 DKHIEVIVRQMIRKCEIL 1266

 Score = 48 (22.0 bits), Expect = 1.3e-44, Sum P(6) = 1.3e-44
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query:   905 GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAE 963
             G AI  +  +   + G    L     A   + +IT G+PR+ ++   A++   P I AE
Sbjct:  1103 GNAI--VNLEDGADVGVGDALARIPQASSKTRDITGGLPRVADLFE-ARKPKLPAILAE 1158

 Score = 37 (18.1 bits), Expect = 3.8e-33, Sum P(6) = 3.8e-33
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query:   656 SKGSPINISQMVACVGQQSVG 676
             ++G  IN  + +  V  QS+G
Sbjct:   904 ARGHMINQGEAIGVVAAQSIG 924


>UNIPROTKB|Q9KV29 [details] [associations]
            symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
            HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
            KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
            PIR:G82336 RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
            PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
            PATRIC:20079715 Uniprot:Q9KV29
        Length = 1401

 Score = 211 (79.3 bits), Expect = 2.7e-51, Sum P(5) = 2.7e-51
 Identities = 52/147 (35%), Positives = 80/147 (54%)

Query:   111 RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
             +PE +I+T + V P  +RP V +DG +   +D+ +  +R+I  N  L++ L  A      
Sbjct:   233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIV 292

Query:   171 LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
                   LQ  V   +++  RG   +    RPL      +KGKQGRFR NL GKRV+Y+GR
Sbjct:   293 RNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGR 352

Query:   231 TVISPDPNLKITEVAIPIRMARILTYP 257
             +VI+  P L++ +  +P +MA  L  P
Sbjct:   353 SVITVGPYLRLHQCGLPKKMALELFKP 379

 Score = 201 (75.8 bits), Expect = 2.7e-51, Sum P(5) = 2.7e-51
 Identities = 40/107 (37%), Positives = 66/107 (61%)

Query:   312 IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMH 371
             I+D  + +  V+L NR P+LHR+ I      ++  + ++ +  VC  YNADFDGD+M +H
Sbjct:   411 ILDEVIREHPVLL-NRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVH 469

Query:   372 VPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK 418
             VP T EA+ EA  LM   NN+ +P +G+ ++  +QD +   + +TR+
Sbjct:   470 VPLTLEAQLEARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRE 516

 Score = 140 (54.3 bits), Expect = 2.7e-51, Sum P(5) = 2.7e-51
 Identities = 79/300 (26%), Positives = 129/300 (43%)

Query:   481 EKTYSNKLIRTEGDEEIRI-ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGL-YSVL 538
             EK Y  K        ++RI ET+   +G +    +++I   +G+A L      GL YS++
Sbjct:   534 EKAYRTKTAELHARVKVRITETIKHENGKLT-TETKMIDTTVGRAMLWQIVPKGLPYSLV 592

Query:   539 LRDYGAHATSGCMNRL-AKLSAR---------------WIGNHGFSIGIDDVQPKKELSD 582
              +  G    S  +N    KL  +               +    G S+GIDD+     +  
Sbjct:   593 NQKLGKKQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMV----VPA 648

Query:   583 KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
              K   I+E  E    +++E  E   Q + G   A      + DI     +   KA M +L
Sbjct:   649 AKYTEIAEAEE----EVREIQE---QFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENL 701

Query:   643 PWRNSPLIMSQCGS--KGSPINISQMVACVGQQSVGGR-RAPNGFIDRSLPHFPRKAKEP 699
                +S  ++++ G   K    N   M+A  G +    + R   G   R L    R     
Sbjct:   702 ---SSEQVINRQGEQEKQESFNSIYMMADSGARGSAAQIRQLAGM--RGL--MARPDGSI 754

Query:   700 AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI-QYD 758
                   AN F  GL+  ++F  T G R+GL DTA+KTA++GY++RRL+   +D+ + ++D
Sbjct:   755 IETPITAN-FKEGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHD 813

 Score = 125 (49.1 bits), Expect = 2.7e-51, Sum P(5) = 2.7e-51
 Identities = 28/65 (43%), Positives = 38/65 (58%)

Query:   893 CFSR--YRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN 950
             C+ R   R   V  G A+G I AQSIGEPGTQ+T++TFH  G AS    +   + K   N
Sbjct:   898 CYGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKN--N 955

Query:   951 GAKRI 955
             G+ ++
Sbjct:   956 GSVKL 960

 Score = 109 (43.4 bits), Expect = 2.7e-51, Sum P(5) = 2.7e-51
 Identities = 39/135 (28%), Positives = 65/135 (48%)

Query:  1124 IDGCKTKSNHIFEVQQTLGIEAARICII-----DEI--NETMKAHGMSIDKRHMMLLA-D 1175
             + G K    HI    +T+  +  R C I      E    ET++   + I  R ++    +
Sbjct:  1242 LQGVKINDKHI----ETIVRQMLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKE 1297

Query:  1176 LMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIP 1235
                F  E+LGIT+  +    +S +  ASF++T   L  A+V+G+ D + G+ E +I+G  
Sbjct:  1298 PARFERELLGITKASLAT--ESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRL 1355

Query:  1236 MPLGTGILKIRQRDA 1250
             +P GTG    + R A
Sbjct:  1356 IPAGTGFAYHQDRQA 1370

 Score = 58 (25.5 bits), Expect = 8.5e-35, Sum P(4) = 8.5e-35
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query:   658 GSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFP-RKAKEPA 700
             G+ +N+   +A + Q+S GG +   G + R    F  RK KEPA
Sbjct:  1112 GAEVNVGDTLARIPQKS-GGNKDITGGLPRVADLFEARKPKEPA 1154

 Score = 52 (23.4 bits), Expect = 1.9e-45, Sum P(5) = 1.9e-45
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query:  1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM------MLLADLMTFRGE 1182
             ++ +  GI A    I +E+ E  +  G+ I+ +H+      ML    +TF G+
Sbjct:  1218 DILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITFAGD 1270

 Score = 46 (21.3 bits), Expect = 3.4e-43, Sum P(5) = 3.4e-43
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query:   937 NITQGVPRIKEIINGAKRISTPIITAE 963
             +IT G+PR+ ++   A++   P I AE
Sbjct:  1133 DITGGLPRVADLFE-ARKPKEPAILAE 1158

 Score = 37 (18.1 bits), Expect = 6.6e-44, Sum P(5) = 6.6e-44
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query:  1145 AARICIIDEINETMKAH 1161
             A+ + IIDE   T + H
Sbjct:   979 ASELTIIDEFGRTKEKH 995

 Score = 37 (18.1 bits), Expect = 1.1e-32, Sum P(5) = 1.1e-32
 Identities = 34/126 (26%), Positives = 51/126 (40%)

Query:   807 AGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFE--GQQDKL-DKKIKFVEDIG 863
             AG R L  +    I+E  + A  KE      LN L+ F    G +  L D  +K     G
Sbjct:   741 AGMRGLMARPDGSIIETPITANFKEG-----LNVLQYFISTHGARKGLADTALKTANS-G 794

Query:   864 WDDKSQILEEVTHKTSGITEKQ---LEVFIQTC-FSRYRVKRVEAGTAIGAIGAQSIGEP 919
             +   ++ L +V      +TE     LE  + T       VK      A+G + ++ I +P
Sbjct:   795 Y--LTRRLVDVAQDVV-VTEHDCGTLEGVVMTPHIEGGDVKVALTELALGRVVSEDILKP 851

Query:   920 GTQMTL 925
             GT   L
Sbjct:   852 GTDEVL 857

 Score = 37 (18.1 bits), Expect = 7.4e-25, Sum P(4) = 7.4e-25
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query:   310 GCIVDRHLEDGDVVLFNRQPSLHRM 334
             G ++  H+E GDV +   + +L R+
Sbjct:   819 GVVMTPHIEGGDVKVALTELALGRV 843


>TIGR_CMR|VC_0329 [details] [associations]
            symbol:VC_0329 "DNA-directed RNA polymerase, beta' subunit"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
            OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G82336
            RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
            PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
            PATRIC:20079715 Uniprot:Q9KV29
        Length = 1401

 Score = 211 (79.3 bits), Expect = 2.7e-51, Sum P(5) = 2.7e-51
 Identities = 52/147 (35%), Positives = 80/147 (54%)

Query:   111 RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
             +PE +I+T + V P  +RP V +DG +   +D+ +  +R+I  N  L++ L  A      
Sbjct:   233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIV 292

Query:   171 LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
                   LQ  V   +++  RG   +    RPL      +KGKQGRFR NL GKRV+Y+GR
Sbjct:   293 RNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGR 352

Query:   231 TVISPDPNLKITEVAIPIRMARILTYP 257
             +VI+  P L++ +  +P +MA  L  P
Sbjct:   353 SVITVGPYLRLHQCGLPKKMALELFKP 379

 Score = 201 (75.8 bits), Expect = 2.7e-51, Sum P(5) = 2.7e-51
 Identities = 40/107 (37%), Positives = 66/107 (61%)

Query:   312 IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMH 371
             I+D  + +  V+L NR P+LHR+ I      ++  + ++ +  VC  YNADFDGD+M +H
Sbjct:   411 ILDEVIREHPVLL-NRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVH 469

Query:   372 VPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK 418
             VP T EA+ EA  LM   NN+ +P +G+ ++  +QD +   + +TR+
Sbjct:   470 VPLTLEAQLEARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRE 516

 Score = 140 (54.3 bits), Expect = 2.7e-51, Sum P(5) = 2.7e-51
 Identities = 79/300 (26%), Positives = 129/300 (43%)

Query:   481 EKTYSNKLIRTEGDEEIRI-ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGL-YSVL 538
             EK Y  K        ++RI ET+   +G +    +++I   +G+A L      GL YS++
Sbjct:   534 EKAYRTKTAELHARVKVRITETIKHENGKLT-TETKMIDTTVGRAMLWQIVPKGLPYSLV 592

Query:   539 LRDYGAHATSGCMNRL-AKLSAR---------------WIGNHGFSIGIDDVQPKKELSD 582
              +  G    S  +N    KL  +               +    G S+GIDD+     +  
Sbjct:   593 NQKLGKKQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMV----VPA 648

Query:   583 KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
              K   I+E  E    +++E  E   Q + G   A      + DI     +   KA M +L
Sbjct:   649 AKYTEIAEAEE----EVREIQE---QFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENL 701

Query:   643 PWRNSPLIMSQCGS--KGSPINISQMVACVGQQSVGGR-RAPNGFIDRSLPHFPRKAKEP 699
                +S  ++++ G   K    N   M+A  G +    + R   G   R L    R     
Sbjct:   702 ---SSEQVINRQGEQEKQESFNSIYMMADSGARGSAAQIRQLAGM--RGL--MARPDGSI 754

Query:   700 AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI-QYD 758
                   AN F  GL+  ++F  T G R+GL DTA+KTA++GY++RRL+   +D+ + ++D
Sbjct:   755 IETPITAN-FKEGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHD 813

 Score = 125 (49.1 bits), Expect = 2.7e-51, Sum P(5) = 2.7e-51
 Identities = 28/65 (43%), Positives = 38/65 (58%)

Query:   893 CFSR--YRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN 950
             C+ R   R   V  G A+G I AQSIGEPGTQ+T++TFH  G AS    +   + K   N
Sbjct:   898 CYGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKN--N 955

Query:   951 GAKRI 955
             G+ ++
Sbjct:   956 GSVKL 960

 Score = 109 (43.4 bits), Expect = 2.7e-51, Sum P(5) = 2.7e-51
 Identities = 39/135 (28%), Positives = 65/135 (48%)

Query:  1124 IDGCKTKSNHIFEVQQTLGIEAARICII-----DEI--NETMKAHGMSIDKRHMMLLA-D 1175
             + G K    HI    +T+  +  R C I      E    ET++   + I  R ++    +
Sbjct:  1242 LQGVKINDKHI----ETIVRQMLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKE 1297

Query:  1176 LMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIP 1235
                F  E+LGIT+  +    +S +  ASF++T   L  A+V+G+ D + G+ E +I+G  
Sbjct:  1298 PARFERELLGITKASLAT--ESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRL 1355

Query:  1236 MPLGTGILKIRQRDA 1250
             +P GTG    + R A
Sbjct:  1356 IPAGTGFAYHQDRQA 1370

 Score = 58 (25.5 bits), Expect = 8.5e-35, Sum P(4) = 8.5e-35
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query:   658 GSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFP-RKAKEPA 700
             G+ +N+   +A + Q+S GG +   G + R    F  RK KEPA
Sbjct:  1112 GAEVNVGDTLARIPQKS-GGNKDITGGLPRVADLFEARKPKEPA 1154

 Score = 52 (23.4 bits), Expect = 1.9e-45, Sum P(5) = 1.9e-45
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query:  1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM------MLLADLMTFRGE 1182
             ++ +  GI A    I +E+ E  +  G+ I+ +H+      ML    +TF G+
Sbjct:  1218 DILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITFAGD 1270

 Score = 46 (21.3 bits), Expect = 3.4e-43, Sum P(5) = 3.4e-43
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query:   937 NITQGVPRIKEIINGAKRISTPIITAE 963
             +IT G+PR+ ++   A++   P I AE
Sbjct:  1133 DITGGLPRVADLFE-ARKPKEPAILAE 1158

 Score = 37 (18.1 bits), Expect = 6.6e-44, Sum P(5) = 6.6e-44
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query:  1145 AARICIIDEINETMKAH 1161
             A+ + IIDE   T + H
Sbjct:   979 ASELTIIDEFGRTKEKH 995

 Score = 37 (18.1 bits), Expect = 1.1e-32, Sum P(5) = 1.1e-32
 Identities = 34/126 (26%), Positives = 51/126 (40%)

Query:   807 AGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFE--GQQDKL-DKKIKFVEDIG 863
             AG R L  +    I+E  + A  KE      LN L+ F    G +  L D  +K     G
Sbjct:   741 AGMRGLMARPDGSIIETPITANFKEG-----LNVLQYFISTHGARKGLADTALKTANS-G 794

Query:   864 WDDKSQILEEVTHKTSGITEKQ---LEVFIQTC-FSRYRVKRVEAGTAIGAIGAQSIGEP 919
             +   ++ L +V      +TE     LE  + T       VK      A+G + ++ I +P
Sbjct:   795 Y--LTRRLVDVAQDVV-VTEHDCGTLEGVVMTPHIEGGDVKVALTELALGRVVSEDILKP 851

Query:   920 GTQMTL 925
             GT   L
Sbjct:   852 GTDEVL 857

 Score = 37 (18.1 bits), Expect = 7.4e-25, Sum P(4) = 7.4e-25
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query:   310 GCIVDRHLEDGDVVLFNRQPSLHRM 334
             G ++  H+E GDV +   + +L R+
Sbjct:   819 GVVMTPHIEGGDVKVALTELALGRV 843


>TIGR_CMR|CBU_0232 [details] [associations]
            symbol:CBU_0232 "DNA-directed RNA polymerase beta'
            subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
            EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
            HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 RefSeq:NP_819276.1 ProteinModelPortal:Q83ET0
            SMR:Q83ET0 PRIDE:Q83ET0 GeneID:1208113 KEGG:cbu:CBU_0232
            PATRIC:17929155 BioCyc:CBUR227377:GJ7S-238-MONOMER Uniprot:Q83ET0
        Length = 1414

 Score = 206 (77.6 bits), Expect = 1.9e-50, Sum P(6) = 1.9e-50
 Identities = 40/95 (42%), Positives = 58/95 (61%)

Query:   323 VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA 382
             +L NR P+LHR+ I      ++  + ++ +  VC  YNADFDGD+M +HVP T EA+ EA
Sbjct:   421 ILLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCTAYNADFDGDQMAVHVPLTLEAQLEA 480

Query:   383 LLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR 417
               LM   NN+  P NGE ++  +QD +   + ITR
Sbjct:   481 RSLMMSTNNVLHPANGEPIIVPSQDVVLGLYYITR 515

 Score = 200 (75.5 bits), Expect = 1.9e-50, Sum P(6) = 1.9e-50
 Identities = 51/148 (34%), Positives = 81/148 (54%)

Query:   111 RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
             +PE +I+T + V P  +RP V +DG +   +D+ +  +R+I  N  L++ L++ N+    
Sbjct:   233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR-LLDLNAPDII 291

Query:   171 LAGWET-LQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +   +  LQ  V   +++  RG        R L      +KGK GRFR NL GKRV+Y+G
Sbjct:   292 VRNEKRMLQEAVDALLDNGRRGRAILGSNRRQLKSLADMIKGKSGRFRQNLLGKRVDYSG 351

Query:   230 RTVISPDPNLKITEVAIPIRMARILTYP 257
             R+VI   P LK+ +  +P +MA  L  P
Sbjct:   352 RSVIVVGPTLKLHQAGLPKKMALELFKP 379

 Score = 143 (55.4 bits), Expect = 1.9e-50, Sum P(6) = 1.9e-50
 Identities = 64/242 (26%), Positives = 106/242 (43%)

Query:   540 RDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISE-NYEVCNVK 598
             R+ G   T    ++L  +   +  + G SIGI+D+     + D+K  +IS    EV  ++
Sbjct:   610 RNLGLKTTVIFADKLMYMGFHYATHSGVSIGINDLV----VPDQKEAIISRAEDEVREIE 665

Query:   599 IKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKG 658
              K+Y  G +         +    VI DI +R  +   KA M  +          +  ++ 
Sbjct:   666 -KQYASGLVT------HGERRNKVI-DIWSRTNDQVAKAMMEKIAVEKVKDAEGKEVAQS 717

Query:   659 SPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEF 718
             S  +I  M     + S    R   G   R L    R           AN F  GL+  ++
Sbjct:   718 SFNSIYMMSDSGARGSAAQTRQLAGM--RGL--MARPDGTIIETPITAN-FREGLNVLQY 772

Query:   719 FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
             F  T G R+GL DTA+KTA++GY++RRL+   +DL +   +    A   ++  + G D +
Sbjct:   773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEHDCGTEASIEMMPHIEGGDVV 832

Query:   779 DP 780
             +P
Sbjct:   833 EP 834

 Score = 128 (50.1 bits), Expect = 1.9e-50, Sum P(6) = 1.9e-50
 Identities = 37/97 (38%), Positives = 48/97 (49%)

Query:   846 EGQQDKLDKKIKFVEDIGWDDKS-QILEEVT----HKTSGITEKQLEVFIQTCFSR--YR 898
             E   D   +K    +D   D++   ILEE +       S IT +        C+ R   R
Sbjct:   846 EPVMDPKSRKELLAKDTFLDERRVDILEEHSIDRVRVRSAITCEARYGICSMCYGRDLAR 905

Query:   899 VKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVAS 935
                V  G AIG + AQSIGEPGTQ+T++TFH  G AS
Sbjct:   906 GHVVNVGEAIGVVAAQSIGEPGTQLTMRTFHIGGAAS 942

 Score = 103 (41.3 bits), Expect = 1.9e-50, Sum P(6) = 1.9e-50
 Identities = 27/69 (39%), Positives = 41/69 (59%)

Query:  1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
             +LGIT+  +    +S +  ASF++T   L  ASV G+ D + G+ E +I+G  +P GTG 
Sbjct:  1305 LLGITKASLAT--ESFISAASFQETTRVLTAASVAGKRDDLRGLKENVIVGRLIPAGTGF 1362

Query:  1243 LKIRQRDAV 1251
                +QR AV
Sbjct:  1363 SYHQQRRAV 1371

 Score = 70 (29.7 bits), Expect = 4.0e-47, Sum P(6) = 4.0e-47
 Identities = 24/99 (24%), Positives = 48/99 (48%)

Query:  1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
             ++ + LG+ A    I++E+ E  +  G+ I+ +H+ ++   M  +   + IT+ G    D
Sbjct:  1218 DILRLLGVNALANYIVNEVQEVYRLQGVKINDKHIEVIVRQMLRK---VKITQPG----D 1270

Query:  1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGI 1234
               +L     E+T     N  +  +D  +  V E I++GI
Sbjct:  1271 TDLLQNEQVERTRVREENEKIIKKDGTVAKV-EPILLGI 1308

 Score = 43 (20.2 bits), Expect = 1.9e-50, Sum P(6) = 1.9e-50
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query:   937 NITQGVPRIKEIINGAKRISTPIITAEL 964
             +IT G+PR+ ++   A+R     I AE+
Sbjct:  1133 DITGGLPRVADLFE-ARRPKDAAILAEI 1159

 Score = 42 (19.8 bits), Expect = 1.3e-31, Sum P(5) = 1.3e-31
 Identities = 6/21 (28%), Positives = 13/21 (61%)

Query:   656 SKGSPINISQMVACVGQQSVG 676
             ++G  +N+ + +  V  QS+G
Sbjct:   904 ARGHVVNVGEAIGVVAAQSIG 924

 Score = 38 (18.4 bits), Expect = 7.3e-44, Sum P(6) = 7.3e-44
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query:  1182 EVLGITRFGIQKMDKSVLMLASFEKT 1207
             E+ G+  FG    DK  L++ + + T
Sbjct:  1158 EISGVVSFGKDTKDKGRLIITAPDGT 1183


>UNIPROTKB|H9L2Z3 [details] [associations]
            symbol:H9L2Z3 "DNA-directed RNA polymerase" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008811 "chloramphenicol O-acetyltransferase activity"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] InterPro:IPR001707 InterPro:IPR007066
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            InterPro:IPR018372 Pfam:PF00302 Pfam:PF04983 Pfam:PF04998
            Pfam:PF05000 ProDom:PD002660 PROSITE:PS00100 SMART:SM01059
            GO:GO:0005634 Gene3D:3.30.559.10 InterPro:IPR023213 GO:GO:0003677
            GO:GO:0008270 GO:GO:0006351 GO:GO:0003899 PANTHER:PTHR19376:SF11
            GeneTree:ENSGT00550000074861 GO:GO:0008811 EMBL:AADN02030152
            EMBL:AADN02030153 EMBL:AADN02030154 Ensembl:ENSGALT00000036066
            OMA:INKRELH Uniprot:H9L2Z3
        Length = 533

 Score = 504 (182.5 bits), Expect = 7.9e-50, Sum P(2) = 7.9e-50
 Identities = 159/509 (31%), Positives = 244/509 (47%)

Query:   368 MNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 427
             MN H PQ E  R EA  L         PK+G+ L    QD + S   +T +  F+ R  +
Sbjct:     1 MNAHFPQNELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQY 60

Query:   428 SLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS-VLIRPHANMRVYVNLTVKEKTY 484
              +   Y G  D   R+    PAI+KP  LWTGKQ+ S +LI       V +NLT K K  
Sbjct:    61 -MELVYRGLTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHVPLNLTGKAKIG 119

Query:   485 SNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA 544
                 +R  G          P +  V  R+ EL+ G L KA  G+ +  GL       YG 
Sbjct:   120 GKAWMR--G----------PANSNVIIRSGELLCGVLDKAHFGS-SAYGLVHCCYEIYGG 166

Query:   545 HATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCN---VKIKE 601
               +   +  L +L   ++  + F + + ++          GK  ++  +V     +++  
Sbjct:   167 ETSGKVLPCLGRLFTAYLQLYRFDLNVANMDNFFAPVFTMGKYYTQGDKVLMPLAIQVHH 226

Query:   602 -----YNEGKL--QLKPGCDAAQ--TLEAVITDILNRIREDAGKACM--G---SLPWRNS 647
                  ++ G++  +L+  CD  Q   ++    + +N    +  K CM  G   S P  N 
Sbjct:   227 AVCDGFHVGRMLNELQQYCDEWQGGAVDLKFKEEVNNYNNEVNKVCMPFGLHRSFPENNL 286

Query:   648 PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVAN 707
              L M Q G+KGS +N  Q+   +GQ  + GRR P     +SLP F      P++ GFV  
Sbjct:   287 QL-MVQSGAKGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTG 345

Query:   708 SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
              F +G+  +EFFFH M GREGLVDTAVKT+ +GY+ R +IK LE L +QYD +VR++ G 
Sbjct:   346 RFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGS 405

Query:   768 IVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAA 827
             +VQFLYG+DG+D    +    E   F     +V+        +Y S    S+ +   +  
Sbjct:   406 VVQFLYGEDGLDIPKTQFLQPEQFPFIADNYEVEHL-----NKYRSESASSKGL---IVT 457

Query:   828 YGKESCSEAFLNSLRKFFE-GQQDKLDKK 855
               ++S S ++  S+ + FE G +D ++K+
Sbjct:   458 MDRQSISNSYFASVSETFESGVEDYINKR 486

 Score = 55 (24.4 bits), Expect = 7.9e-50, Sum P(2) = 7.9e-50
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query:   903 EAGTAIGAIGAQSIGEP 919
             + G A+G + AQSIGEP
Sbjct:   516 DPGEAVGLLAAQSIGEP 532


>UNIPROTKB|H9L2Z2 [details] [associations]
            symbol:H9L2Z2 "DNA-directed RNA polymerase" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008811 "chloramphenicol O-acetyltransferase activity"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] InterPro:IPR001707 InterPro:IPR007066
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF04983 Pfam:PF04998 Pfam:PF05000 ProDom:PD002660
            GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
            GO:GO:0008811 EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
            Ensembl:ENSGALT00000036065 Uniprot:H9L2Z2
        Length = 527

 Score = 481 (174.4 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
 Identities = 168/501 (33%), Positives = 235/501 (46%)

Query:   368 MNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 427
             MN H PQ E  R EA  L         PK+G+ L    QD + S   +T +  F+ R  +
Sbjct:     1 MNAHFPQNELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQY 60

Query:   428 SLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS-VLIRPHANMRVYVNLTVKEKTY 484
              +   Y G  D   R+    PAI+KP  LWTGKQ+ S +LI       V +NLT K K  
Sbjct:    61 -MELVYRGLTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHVPLNLTGKAK-- 117

Query:   485 SNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA 544
                L+       +     C     V  R+ EL+ G L KA  G+ +  GL       YG 
Sbjct:   118 ---LV------VVFFLNSCFLFQ-VIIRSGELLCGVLDKAHFGS-SAYGLVHCCYEIYGG 166

Query:   545 HATSG----CMNRL--AKLSARWIGNHG-----FSIG-IDDVQPKKELSDKKGKLISENY 592
               TSG    C+ RL  A L    +  +G     F  G I+++   + + +      ++  
Sbjct:   167 E-TSGKVLPCLGRLFTAYLQLYHVACYGENLAYFPKGFIENITRLQLIHNLMYHTHTQET 225

Query:   593 EVCNVKIKEYNEGKLQLKPGCDAAQTLEAV---ITDILNRIREDAGKACM--G---SLPW 644
             E  +    E  +GK Q    C   +    V     + +N    +  K CM  G   S P 
Sbjct:   226 ETSSC---EDVQGKWQDAHLCKDQRDFNMVDLKFKEEVNNYNNEVNKVCMPFGLHRSFPE 282

Query:   645 RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 704
              N  L M Q G+KGS +N  Q+   +GQ  + GRR P     +SLP F      P++ GF
Sbjct:   283 NNLQL-MVQSGAKGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGF 341

Query:   705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
             V   F +G+  +EFFFH M GREGLVDTAVKT+ +GY+ R +IK LE L +QYD +VR++
Sbjct:   342 VTGRFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDS 401

Query:   765 GGCIVQFLYGDDGMDPANMEGKSG----EPLNFDRLLMKVKATCPPAGQRYLSPQQVSEI 820
              G +VQFLYG+DG+D     G S       L F+  L+K +   P   Q +      S+ 
Sbjct:   402 DGSVVQFLYGEDGLDIPKSSGTSVCHCYTVLYFNVTLLKYRKKAPLLCQLWTGESASSKG 461

Query:   821 VEKQLAAYGKESCSEAFLNSL 841
             +     + G  S  +AFLN+L
Sbjct:   462 LS---TSRGFTSKLKAFLNNL 479

 Score = 55 (24.4 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query:   903 EAGTAIGAIGAQSIGEP 919
             + G A+G + AQSIGEP
Sbjct:   510 DPGEAVGLLAAQSIGEP 526


>UNIPROTKB|H9L2Z0 [details] [associations]
            symbol:H9L2Z0 "DNA-directed RNA polymerase" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            InterPro:IPR007066 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF04983 Pfam:PF04998 Pfam:PF05000
            GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
            EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
            Ensembl:ENSGALT00000036063 Uniprot:H9L2Z0
        Length = 517

 Score = 475 (172.3 bits), Expect = 2.4e-47, Sum P(2) = 2.4e-47
 Identities = 148/433 (34%), Positives = 212/433 (48%)

Query:   368 MNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 427
             MN H PQ E  R EA  L         PK+G+ L    QD + S   +T +  F+ R  +
Sbjct:     1 MNAHFPQNELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQY 60

Query:   428 SLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS-VLIRPHANMRVYVNLTVKEKTY 484
              +   Y G  D   R+    PAI+KP  LWTGKQ+ S +LI       V +NLT K K  
Sbjct:    61 -MELVYRGLTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHVPLNLTGKAKIG 119

Query:   485 SNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA 544
                  +  G  E            V  R+ EL+ G L KA  G+ +  GL       YG 
Sbjct:   120 G----KAWGKNEK-----------VIIRSGELLCGVLDKAHFGS-SAYGLVHCCYEIYGG 163

Query:   545 HATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELS---DKKGK-----LISE--NYEV 594
               +   +  L +L   ++  + +  G+       E S   D +GK     L  +  ++ +
Sbjct:   164 ETSGKVLPCLGRLFTAYLQLYQYMSGVLAALNLPETSSCEDVQGKWQDAHLCKDQRDFNM 223

Query:   595 CNVKIKE-YNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKA--CM--G---SLPWRN 646
              ++K KE  N    ++   C   Q + A+++  +N  +     +  CM  G   S P  N
Sbjct:   224 VDLKFKEEVNNYNNEVNKAC--LQLVFALLSTGINCAQYFLNNSLVCMPFGLHRSFPENN 281

Query:   647 SPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVA 706
               L M Q G+KGS +N  Q+   +GQ  + GRR P     +SLP F      P++ GFV 
Sbjct:   282 LQL-MVQSGAKGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVT 340

Query:   707 NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGG 766
               F +G+  +EFFFH M GREGLVDTAVKT+ +GY+ R +IK LE L +QYD +VR++ G
Sbjct:   341 GRFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDG 400

Query:   767 CIVQFLYGDDGMD 779
              +VQFLYG+DG+D
Sbjct:   401 SVVQFLYGEDGLD 413

 Score = 61 (26.5 bits), Expect = 2.4e-47, Sum P(2) = 2.4e-47
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query:   871 LEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEP 919
             +E+  +K      K L +     + +++    + G A+G + AQSIGEP
Sbjct:   468 VEDYINKREFTELKPLLILKDLLYLKWQRSLCDPGEAVGLLAAQSIGEP 516


>TIGR_CMR|NSE_0677 [details] [associations]
            symbol:NSE_0677 "DNA-directed RNA polymerase, beta'
            subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
            [GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
            evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CP000237
            GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0086 KO:K03046
            HOGENOM:HOG000218386 TIGRFAMs:TIGR02386 OMA:VIAEWDP
            RefSeq:YP_506555.1 ProteinModelPortal:Q2GD91 SMR:Q2GD91
            STRING:Q2GD91 PRIDE:Q2GD91 GeneID:3931848 KEGG:nse:NSE_0677
            PATRIC:22681373 BioCyc:NSEN222891:GHFU-691-MONOMER Uniprot:Q2GD91
        Length = 1375

 Score = 182 (69.1 bits), Expect = 1.4e-46, Sum P(7) = 1.4e-46
 Identities = 32/97 (32%), Positives = 59/97 (60%)

Query:   323 VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA 382
             V  NR P+LHR+S+      ++  + ++ +  VC  +NADFDGD+M++HVP + EA+ EA
Sbjct:   422 VFLNRAPTLHRLSVQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMSVHVPLSIEAQVEA 481

Query:   383 LLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
              LL+   NN+  P N   ++  ++D +   + ++ ++
Sbjct:   482 RLLVMSTNNVLNPANSRPIIVPSKDIVLGVYYLSLEE 518

 Score = 173 (66.0 bits), Expect = 1.4e-46, Sum P(7) = 1.4e-46
 Identities = 48/148 (32%), Positives = 75/148 (50%)

Query:   111 RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL-VEANSAFK 169
             RP  +I+  I V P  +RP V++DG +   +D+    + +I  N  L+  + ++A +   
Sbjct:   234 RPVDMILDVIPVMPPDLRPLVMLDGGRFATSDLNALYRSVINRNNRLKSLIYLKAPNIII 293

Query:   170 SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +      LQ  V    ++  R         RP       LKGKQGRFR NL GKRV+Y+G
Sbjct:   294 NNER-RMLQEAVDALFDNGRRAKVIKGSNKRPYKSISDMLKGKQGRFRQNLLGKRVDYSG 352

Query:   230 RTVISPDPNLKITEVAIPIRMARILTYP 257
             R+VI   P L++ +  +P ++A  L  P
Sbjct:   353 RSVIVVGPALELHQCGLPKKIALELFKP 380

 Score = 128 (50.1 bits), Expect = 1.4e-46, Sum P(7) = 1.4e-46
 Identities = 34/87 (39%), Positives = 49/87 (56%)

Query:   853 DKKIKFVEDIGWDDKSQILEEVTHKTS-GITEKQLEVFIQTCFSRYRVKRVEAGTAIGAI 911
             DK I+ +E +G D   +I   +T K+  GI  K     +    +R   K V  G A+G I
Sbjct:   849 DKSIERIESLGIDSV-RIRSVLTCKSKHGICRKCYGADLS---NR---KLVALGEAVGVI 901

Query:   912 GAQSIGEPGTQMTLKTFHFAGVASMNI 938
              AQS+GEPGTQ+T++TFH  G A+  +
Sbjct:   902 AAQSVGEPGTQLTMRTFHVGGAATRRV 928

 Score = 120 (47.3 bits), Expect = 1.4e-46, Sum P(7) = 1.4e-46
 Identities = 24/66 (36%), Positives = 41/66 (62%)

Query:   705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
             + ++   G    E+F  T G R+GL DTA+KTA++GY++RRL+   +D SI  +    ++
Sbjct:   742 IISNLREGQGVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQD-SIIVEEDCGSS 800

Query:   765 GGCIVQ 770
              G +V+
Sbjct:   801 NGLVVR 806

 Score = 113 (44.8 bits), Expect = 1.4e-46, Sum P(7) = 1.4e-46
 Identities = 38/126 (30%), Positives = 63/126 (50%)

Query:  1124 IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG-- 1181
             + G K  + HI  + + +     ++ I D   +T    G  IDK  +  + ++M  +G  
Sbjct:  1226 LQGVKINNKHIEVIIRKM---LQKVEITDA-GDTTFLIGEQIDKSRVERINEVMASQGLR 1281

Query:  1182 ------EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIP 1235
                    +LGITR  +Q   +S +  ASF++T   L  A+V G+ DR+ G+ E II G  
Sbjct:  1282 CCSYVPVLLGITRASLQT--ESFISAASFQETTKVLTEAAVAGKVDRLRGLKENIIAGRL 1339

Query:  1236 MPLGTG 1241
             +P+G G
Sbjct:  1340 LPVGAG 1345

 Score = 74 (31.1 bits), Expect = 1.3e-42, Sum P(7) = 1.3e-42
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query:  1134 IFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL--GITRFGI 1191
             + E+ + LG+EA    +I EI    +  G+ I+ +H+ ++   M  + E+   G T F I
Sbjct:  1200 LHEILRVLGLEALAEYMISEIQRVYRLQGVKINNKHIEVIIRKMLQKVEITDAGDTTFLI 1259

Query:  1192 -QKMDKS 1197
              +++DKS
Sbjct:  1260 GEQIDKS 1266

 Score = 71 (30.1 bits), Expect = 1.4e-46, Sum P(7) = 1.4e-46
 Identities = 37/155 (23%), Positives = 61/155 (39%)

Query:   534 LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDD--VQPKKELSDKKGKLISEN 591
             L  ++ +  G   T    + + +L  R+    G S G DD  V P K    ++     + 
Sbjct:   596 LVDLVYKTCGHGKTVEFADGIMELGFRYATLSGISFGKDDMVVPPTKSEHVRRANEEVKE 655

Query:   592 YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIM 651
             YE       +Y EG +      +         TD++ +   D G +   S+   NS  +M
Sbjct:   656 YEF------QYQEGLITKHEKYNKVVDAWQKCTDLVAKDMMD-GISGYESVAEMNSIFMM 708

Query:   652 SQCGSKGSPINISQMVACVGQQSV-GGRRAPNGFI 685
             +Q G++GS   I Q+    G  +   G   PN  I
Sbjct:   709 AQSGARGSAAQIKQLAGMRGLMAKPSGEIIPNPII 743

 Score = 41 (19.5 bits), Expect = 1.4e-46, Sum P(7) = 1.4e-46
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query:   937 NITQGVPRIKEIINGAKRISTPIITAELE 965
             +IT G+PR+ E+   A++     + +E++
Sbjct:  1114 DITGGLPRVIELFE-ARKAKVNAVISEID 1141

 Score = 39 (18.8 bits), Expect = 2.2e-08, Sum P(4) = 2.2e-08
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query:    35 CGYINGMVKKAVAVLGII 52
             CG  NG+V +A    G++
Sbjct:   797 CGSSNGLVVRATVEGGVV 814


>UNIPROTKB|H9L2Z1 [details] [associations]
            symbol:H9L2Z1 "DNA-directed RNA polymerase" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            InterPro:IPR007066 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF04983 Pfam:PF04998 Pfam:PF05000
            GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
            EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
            Ensembl:ENSGALT00000036064 Uniprot:H9L2Z1
        Length = 522

 Score = 469 (170.2 bits), Expect = 4.4e-46, Sum P(2) = 4.4e-46
 Identities = 146/430 (33%), Positives = 206/430 (47%)

Query:   368 MNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 427
             MN H PQ E  R EA  L         PK+G+ L    QD + S   +T +  F+ R  +
Sbjct:     1 MNAHFPQNELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQY 60

Query:   428 SLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS-VLIRPHANMRVYVNLTVKEKTY 484
              +   Y G  D   R+    PAI+KP  LWTGKQ+ S +LI       V +NLT K K  
Sbjct:    61 -MELVYRGLTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHVPLNLTGKAKIG 119

Query:   485 SNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA 544
                  +  G  E            V  R+ EL+ G L KA  G+ +  GL       YG 
Sbjct:   120 G----KAWGKNEK-----------VIIRSGELLCGVLDKAHFGS-SAYGLVHCCYEIYGG 163

Query:   545 HATSGCMNRLAKLSARWIGNHGFSIGIDD--VQPKKE-----LSDKKGKLISENYEVCNV 597
               +   +  L +L   ++  + F  G     ++P+        + ++G   + + E  + 
Sbjct:   164 ETSGKVLPCLGRLFTAYLQLYRFKRGQYGQLLRPRFHHGQILYARRQGADAAGDSETSSC 223

Query:   598 KIKEYNEGKLQLKPGCDAAQTLEAV---ITDILNRIREDAGKACM--G---SLPWRNSPL 649
                E  +GK Q    C   +    V     + +N    +  K CM  G   S P  N  L
Sbjct:   224 ---EDVQGKWQDAHLCKDQRDFNMVDLKFKEEVNNYNNEVNKVCMPFGLHRSFPENNLQL 280

Query:   650 IMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSF 709
              M Q G+KGS +N  Q+   +GQ  + GRR P     +SLP F      P++ GFV   F
Sbjct:   281 -MVQSGAKGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRF 339

Query:   710 YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIV 769
              +G+  +EFFFH M GREGLVDTAVKT+ +GY+ R +IK LE L +QYD +VR++ G +V
Sbjct:   340 LTGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVV 399

Query:   770 QFLYGDDGMD 779
             QFLYG+DG+D
Sbjct:   400 QFLYGEDGLD 409

 Score = 55 (24.4 bits), Expect = 4.4e-46, Sum P(2) = 4.4e-46
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query:   903 EAGTAIGAIGAQSIGEP 919
             + G A+G + AQSIGEP
Sbjct:   505 DPGEAVGLLAAQSIGEP 521


>TIGR_CMR|ECH_0951 [details] [associations]
            symbol:ECH_0951 "DNA-directed RNA polymerase, beta'
            subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
            [GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
            evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
            EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
            KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 RefSeq:YP_507739.1 ProteinModelPortal:Q2GFP4
            STRING:Q2GFP4 PRIDE:Q2GFP4 GeneID:3927754 KEGG:ech:ECH_0951
            PATRIC:20577284 BioCyc:ECHA205920:GJNR-954-MONOMER Uniprot:Q2GFP4
        Length = 1410

 Score = 197 (74.4 bits), Expect = 3.9e-45, Sum P(6) = 3.9e-45
 Identities = 36/108 (33%), Positives = 68/108 (62%)

Query:   312 IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMH 371
             I+D  + +  ++L NR P+LHR+ I      ++  + ++ +  VC+ +NADFDGD+M +H
Sbjct:   412 ILDEVIHEHPILL-NRAPTLHRLGIQAFDPVLIEGKAIQLHPLVCSAFNADFDGDQMAVH 470

Query:   372 VPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
             +P + EA+ EA +LM   NN+ +P NG+ ++  ++D +   + +T +D
Sbjct:   471 IPLSLEAQLEARILMMSTNNILSPSNGKPIIVPSKDIVLGIYYLTLQD 518

 Score = 175 (66.7 bits), Expect = 3.9e-45, Sum P(6) = 3.9e-45
 Identities = 48/149 (32%), Positives = 74/149 (49%)

Query:   111 RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
             +PE +I+T I + P  +RP V ++  +   +D+    + II  N  L + L++ N     
Sbjct:   233 KPEWMILTVIPILPPDLRPLVSLENGRPAVSDLNHHYRTIINRNNRLGK-LLKLNPPAIM 291

Query:   171 LAGWETLQVEVAQYINSDVRGVPFSMQVARP--LSGFVQRLKGKQGRFRGNLSGKRVEYT 228
             +   + +  E    +    R    S +             LKGKQGRFR NL GKRV+Y+
Sbjct:   292 IRNEKRMLQEAVDALFDSTRRSYVSNKAGSVGYKKSLSDMLKGKQGRFRQNLLGKRVDYS 351

Query:   229 GRTVISPDPNLKITEVAIPIRMARILTYP 257
             GR+VI   PNLK+ +  +P +MA  L  P
Sbjct:   352 GRSVIVVGPNLKLHQCGLPKKMALELFKP 380

 Score = 135 (52.6 bits), Expect = 3.9e-45, Sum P(6) = 3.9e-45
 Identities = 25/60 (41%), Positives = 41/60 (68%)

Query:   705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED-LSIQYDNSVRN 763
             + ++F  GL+  E+F  T G R+GL DTA+KTA++GY++RRL+   +D + ++YD    N
Sbjct:   755 IISNFREGLNVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCIVVEYDCKTHN 814

 Score = 115 (45.5 bits), Expect = 3.9e-45, Sum P(6) = 3.9e-45
 Identities = 20/37 (54%), Positives = 26/37 (70%)

Query:   902 VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNI 938
             V  G A+G I AQS+GEPGTQ+T++TFH  G A   +
Sbjct:   905 VSIGEAVGVIAAQSVGEPGTQLTMRTFHVGGTAMRGV 941

 Score = 104 (41.7 bits), Expect = 3.9e-45, Sum P(6) = 3.9e-45
 Identities = 35/107 (32%), Positives = 56/107 (52%)

Query:  1151 IDEINETMKAHGMSIDKRHMMLLADLMTFRGE-------VL-GITRFGIQKMDKSVLMLA 1202
             I E  +TM   G +ID   ++   D M   G+       +L GITR  +     S +  A
Sbjct:  1262 IFEPGDTMYLVGENIDMEEVIKTNDNMVKMGKSPAKYAPILQGITRASLDT--NSFVSAA 1319

Query:  1203 SFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGIL--KIRQ 1247
             SF++T   L  A+ +G++D + G+ E +I+G  +P GTG L  KI++
Sbjct:  1320 SFQETTKVLTEAAFSGKEDSLYGLKENVIVGRLIPAGTGFLMNKIKK 1366

 Score = 67 (28.6 bits), Expect = 2.3e-41, Sum P(6) = 2.3e-41
 Identities = 13/48 (27%), Positives = 27/48 (56%)

Query:  1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
             ++ + LG+EA    +I EI +  +  G+ ID +H+ ++   M  + E+
Sbjct:  1215 DILRVLGVEALANYMISEIQQVYRLQGVRIDNKHIEIILRQMLQKVEI 1262

 Score = 45 (20.9 bits), Expect = 3.9e-45, Sum P(6) = 3.9e-45
 Identities = 28/140 (20%), Positives = 54/140 (38%)

Query:   534 LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYE 593
             +  ++ R  G   T    ++L  L  ++    G S G  D+     + D K   +    E
Sbjct:   609 IVDLVYRSCGQSETVEFSDKLMSLGFKYASQSGISFGCKDMI----IPDTKTMHVDNASE 664

Query:   594 VCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKAC-MGSLPWR-NSPLIM 651
                    +Y +G +      +      +  TD+   I +D  KA  +  +  + NS  +M
Sbjct:   665 KIKEFAVQYQDGLITRSERYNKVIDEWSKCTDL---IAKDMMKAISVYDVESKLNSIYMM 721

Query:   652 SQCGSKGSPINISQMVACVG 671
             +  G++GS   + Q+    G
Sbjct:   722 AHSGARGSASQMKQLAGMRG 741

 Score = 42 (19.8 bits), Expect = 1.0e-37, Sum P(6) = 1.0e-37
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query:   933 VASMNITQGVPRIKEIINGAKRISTPIITAELE 965
             + + +IT G+PR+ E+   A+R     I ++++
Sbjct:  1123 IKTRDITGGLPRVIELFE-ARRPKEHAIVSDID 1154

 Score = 37 (18.1 bits), Expect = 1.2e-27, Sum P(5) = 1.2e-27
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query:   658 GSPINISQMVACVGQQSVG 676
             G  ++I + V  +  QSVG
Sbjct:   902 GDVVSIGEAVGVIAAQSVG 920

 Score = 37 (18.1 bits), Expect = 1.2e-27, Sum P(5) = 1.2e-27
 Identities = 6/28 (21%), Positives = 16/28 (57%)

Query:   475 VNLTVKEKTYSNKLIRTEGDEEIRIETM 502
             VN  + E  + NK++ +   E + ++++
Sbjct:   957 VNSNIVEDKHGNKIVMSRSCEVVLLDSV 984


>TIGR_CMR|APH_1023 [details] [associations]
            symbol:APH_1023 "DNA-directed RNA polymerase, beta'
            subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
            "cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
            HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
            GO:GO:0006351 EMBL:CP000235 GenomeReviews:CP000235_GR
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
            KO:K03046 RefSeq:YP_505582.1 ProteinModelPortal:Q2GJ69
            STRING:Q2GJ69 PRIDE:Q2GJ69 GeneID:3930013 KEGG:aph:APH_1023
            PATRIC:20950796 HOGENOM:HOG000218386 OMA:DINDKHI
            ProtClustDB:PRK00566 BioCyc:APHA212042:GHPM-1030-MONOMER
            TIGRFAMs:TIGR02386 Uniprot:Q2GJ69
        Length = 1409

 Score = 194 (73.4 bits), Expect = 1.0e-44, Sum P(5) = 1.0e-44
 Identities = 34/105 (32%), Positives = 67/105 (63%)

Query:   312 IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMH 371
             ++D  +++  ++L NR P+LHR+ +      ++  + ++ +  VC+ +NADFDGD+M +H
Sbjct:   412 VLDEVIKEHPILL-NRAPTLHRLGLQAFDPVLIEGKAIQLHPLVCSAFNADFDGDQMAVH 470

Query:   372 VPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
             VP ++EA+ EA +LM   NN+ +P NG  ++  ++D +   + +T
Sbjct:   471 VPLSQEAQLEARVLMMSTNNILSPSNGRPIIVPSKDIVLGIYYLT 515

 Score = 181 (68.8 bits), Expect = 1.0e-44, Sum P(5) = 1.0e-44
 Identities = 50/149 (33%), Positives = 76/149 (51%)

Query:   111 RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
             RPE +I+T I V P  +RP V ++  +   +D+    + II  N  L++ L++ N     
Sbjct:   233 RPEWMILTVIPVLPPDLRPLVSLENGRPAVSDLNHHYRTIINRNNRLEK-LLKLNPPAIM 291

Query:   171 LAGWETLQVEVAQYINSDVRGVPFSMQVARP--LSGFVQRLKGKQGRFRGNLSGKRVEYT 228
             +   + +  E    +    R    S +V            LKGKQGRFR NL GKRV+Y+
Sbjct:   292 IRNEKRMLQEAVDALFDSSRRSYVSSRVGSMGYKKSLSDMLKGKQGRFRQNLLGKRVDYS 351

Query:   229 GRTVISPDPNLKITEVAIPIRMARILTYP 257
             GR+VI   P+LK+ +  +P +MA  L  P
Sbjct:   352 GRSVIVVGPSLKLHQCGLPKKMALELFKP 380

 Score = 137 (53.3 bits), Expect = 1.0e-44, Sum P(5) = 1.0e-44
 Identities = 42/143 (29%), Positives = 71/143 (49%)

Query:   628 NRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDR 687
             N++ ++  K C   +  R+    +S C  KG   +I  M     + S    +   G   R
Sbjct:   680 NKVVDEWSK-CTDLIA-RDMMKAISLCDEKGKYNSIYMMANSGARGSASQMKQLAGM--R 735

Query:   688 SLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLI 747
              L   P  + E      ++N F  GLS  E+F  T G R+GL DTA+KTA++GY++RRL+
Sbjct:   736 GLMAKP--SGEIIETPIISN-FREGLSVFEYFNSTHGARKGLADTALKTANSGYLTRRLV 792

Query:   748 KALEDLSIQYDNSVRNAGGCIVQ 770
                +D ++  ++    +GG + +
Sbjct:   793 DVAQDCTV-VEHDCGTSGGVVAR 814

 Score = 116 (45.9 bits), Expect = 1.0e-44, Sum P(5) = 1.0e-44
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query:   902 VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGA-KRISTPII 960
             V  G A+G I AQS+GEPGTQ+T++TFH  G A   +   V  +  +++   K +++ ++
Sbjct:   900 VSIGEAVGVIAAQSVGEPGTQLTMRTFHVGGTAMRGVE--VSNLIALMDATVKLVNSNVV 957

Query:   961 T 961
             T
Sbjct:   958 T 958

 Score = 95 (38.5 bits), Expect = 1.0e-44, Sum P(5) = 1.0e-44
 Identities = 37/132 (28%), Positives = 65/132 (49%)

Query:  1124 IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG-- 1181
             + G K  + HI  + + + ++   I    E  +TM   G  + +  +M L   +   G  
Sbjct:  1234 LQGVKIDNKHIEVILRQM-LQKVEIT---EPGDTMYLIGEHVSREEVMKLNRKLAEAGKK 1289

Query:  1182 EVLGITRF-GIQK--MD-KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP 1237
             EV  +    GI K  +D  S +  ASF++T   L  A+  G++D + G+ E +I+G  +P
Sbjct:  1290 EVSYVPILQGITKASLDTNSFISAASFQETTKVLTEAAFAGKEDPLYGLKENVIVGRLIP 1349

Query:  1238 LGTGIL--KIRQ 1247
              GTG +  KI++
Sbjct:  1350 AGTGFIMNKIKK 1361

 Score = 63 (27.2 bits), Expect = 1.9e-41, Sum P(5) = 1.9e-41
 Identities = 13/48 (27%), Positives = 26/48 (54%)

Query:  1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
             ++ + LG EA    +I EI +  +  G+ ID +H+ ++   M  + E+
Sbjct:  1210 DILRVLGTEALANYMISEIQQVYRLQGVKIDNKHIEVILRQMLQKVEI 1257

 Score = 40 (19.1 bits), Expect = 5.7e-37, Sum P(5) = 5.7e-37
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query:   933 VASMNITQGVPRIKEIINGAK 953
             + + +IT G+PR+ E+    K
Sbjct:  1118 IKTRDITGGLPRVIELFEARK 1138

 Score = 38 (18.4 bits), Expect = 6.5e-39, Sum P(5) = 6.5e-39
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query:  1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIR 1246
             K  D ++  S+N   D   G+S  +++   M L    L+ R
Sbjct:  1027 KYVDLIYGVSINEVLDESTGISNRVVVDWKMHLQGANLRPR 1067

 Score = 37 (18.1 bits), Expect = 1.6e-34, Sum P(5) = 1.6e-34
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query:   807 AGQRYLSPQQVSEIVEKQLAAYGKESCSE-AFLNSLRKFFEGQQD 850
             AG R L  +   EI+E  + +  +E  S   + NS     +G  D
Sbjct:   732 AGMRGLMAKPSGEIIETPIISNFREGLSVFEYFNSTHGARKGLAD 776


>TIGR_CMR|DET_0604 [details] [associations]
            symbol:DET_0604 "DNA-directed RNA polymerase, beta'
            subunit" species:243164 "Dehalococcoides ethenogenes 195"
            [GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
            evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
            GO:GO:0006351 EMBL:CP000027 GenomeReviews:CP000027_GR
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
            KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
            HOGENOM:HOG000218387 RefSeq:YP_181346.1 ProteinModelPortal:Q3Z8V3
            SMR:Q3Z8V3 STRING:Q3Z8V3 PRIDE:Q3Z8V3 GeneID:3230059
            KEGG:det:DET0604 PATRIC:21608279 BioCyc:DETH243164:GJNF-605-MONOMER
            Uniprot:Q3Z8V3
        Length = 1295

 Score = 213 (80.0 bits), Expect = 3.3e-43, Sum P(5) = 3.3e-43
 Identities = 62/180 (34%), Positives = 96/180 (53%)

Query:   109 SERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAF 168
             S +PE +I+T + V P  +RP V +DG +   +D+ +  +R+I  N  LQ  L+E  +  
Sbjct:   287 SNKPEWMIMTVLPVLPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQH-LMEIGAPE 345

Query:   169 KSLAGWET-LQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +   +  LQ  V   I++  RG   ++            L+GKQGRFR NL GKRV+Y
Sbjct:   346 IIIRNEKRMLQEAVDSLIDNGRRGKSVAVNGDHKAKSLSDLLRGKQGRFRQNLLGKRVDY 405

Query:   228 TGRTVISPDPNLKITEVAIPIRMARILTYP---ER-VSDH---NIEKLRQCIQNG-PDKY 279
             +GR+VI   P+LK+++  +P RMA  L  P    R V D    NI+  R+ ++   P+ Y
Sbjct:   406 SGRSVIVVGPSLKLSQCGLPRRMALELFKPFVMHRLVRDGLAPNIKSARRLVERARPEVY 465

 Score = 184 (69.8 bits), Expect = 3.3e-43, Sum P(5) = 3.3e-43
 Identities = 49/138 (35%), Positives = 77/138 (55%)

Query:   847 GQQDKLDK-KIKFVEDIGWDD---KSQILEEVTHKTSGITEKQLEVFIQTCFSRY--RVK 900
             G  +++D+ K K + + G  +   +S +  E TH   G+  +        C+ R   RV+
Sbjct:   885 GNNEEIDEAKAKAIGEAGITEVFVRSPLTCEATH---GMCRR--------CYGRDLGRVR 933

Query:   901 RVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK-RISTPI 959
              V+  TA+G I AQSIGEPGTQ+TL+TFH  GV  ++IT G+PR++E+      ++ + I
Sbjct:   934 LVDMNTAVGIIAAQSIGEPGTQLTLRTFHTGGVVGVDITTGLPRVEELFEARPPKVQSII 993

Query:   960 --ITAELECNDNENAARV 975
               I  E E  +NEN   +
Sbjct:   994 SEIDGEAEVIENENGRHI 1011

 Score = 171 (65.3 bits), Expect = 3.3e-43, Sum P(5) = 3.3e-43
 Identities = 35/94 (37%), Positives = 56/94 (59%)

Query:   323 VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA 382
             V+ NR P+LHR+SI      ++    LR +  VC+ +NADFDGD+M +HVP ++ A  EA
Sbjct:   477 VMLNRAPTLHRLSIQAFEPVLIDGSALRLHPLVCSAFNADFDGDQMAVHVPLSKAAVKEA 536

Query:   383 LLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
                M   +N+  P +GE +V+ + D +   + +T
Sbjct:   537 RETMLSIHNMMLPSSGEPVVSPSLDMVFGCYYLT 570

 Score = 134 (52.2 bits), Expect = 4.0e-38, Sum P(5) = 4.0e-38
 Identities = 44/139 (31%), Positives = 71/139 (51%)

Query:   705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
             + +S   GL+  E+F  T G R+GL DTA++T+ +GY++RRLI   +D+ I  ++   + 
Sbjct:   786 IKSSLREGLTTLEYFISTHGARKGLADTALRTSGSGYLTRRLIDVTQDVIILQEDCGTSN 845

Query:   765 GGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA---TCPPAGQRYLSPQQVSEIV 821
             G  IV+    + GM P         PL  DR+L +  A     P  G+  +   +  EI 
Sbjct:   846 GTWIVE--PKEKGMLP---------PL-VDRVLGRWAAHNVVHPQTGEIIVGNNE--EID 891

Query:   822 EKQLAAYGKESCSEAFLNS 840
             E +  A G+   +E F+ S
Sbjct:   892 EAKAKAIGEAGITEVFVRS 910

 Score = 88 (36.0 bits), Expect = 3.3e-43, Sum P(5) = 3.3e-43
 Identities = 29/95 (30%), Positives = 51/95 (53%)

Query:  1151 IDEINETMKAHGMSIDK-RHMMLLADLMTFRGE-------VLGITRFGIQKMDKSVLMLA 1202
             ID   +T    G  +DK R+  + A ++   GE       ++GITR  +    +S L  A
Sbjct:  1169 IDSSGDTDLVPGELVDKFRYEDINAKVLAEGGEPATAHTVLMGITRASLST--ESWLAAA 1226

Query:  1203 SFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP 1237
             SF++T   L +A++ G+ D++ G+ E +I+G  +P
Sbjct:  1227 SFQETTRVLTDAAIYGKVDKLSGLKENVIIGKLIP 1261

 Score = 53 (23.7 bits), Expect = 1.2e-39, Sum P(5) = 1.2e-39
 Identities = 9/45 (20%), Positives = 26/45 (57%)

Query:  1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFR 1180
             ++   LG +A +  +++E+ +   + G+ I+ +H+ ++A  M  +
Sbjct:  1122 DILSILGRDAVQKYLVEEVQKVYYSQGVHINDKHIEVIARQMLIK 1166

 Score = 49 (22.3 bits), Expect = 3.3e-43, Sum P(5) = 3.3e-43
 Identities = 25/121 (20%), Positives = 50/121 (41%)

Query:   551 MNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLK 610
             ++++ +L  ++  + G SI + D+   +E    K KL++   E   +   ++  G +   
Sbjct:   663 LDKIKQLGFKYATSSGISIAMSDISVPRE----KAKLVAAADERTAISEGQFARGLITED 718

Query:   611 PGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACV 670
                ++        TD   RI +    A       + S  +M+  G+KG+   I QM    
Sbjct:   719 ERYNSIIETWMETTD---RITD----AIQAGFDKQGSVYMMANSGAKGNISQIRQMAGLR 771

Query:   671 G 671
             G
Sbjct:   772 G 772

 Score = 39 (18.8 bits), Expect = 2.5e-29, Sum P(4) = 2.5e-29
 Identities = 6/18 (33%), Positives = 13/18 (72%)

Query:   390 NNLCTPKNGEILVASTQD 407
             +N+  P+ GEI+V + ++
Sbjct:   872 HNVVHPQTGEIIVGNNEE 889

 Score = 37 (18.1 bits), Expect = 5.6e-42, Sum P(5) = 5.6e-42
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query:   565 HGFSIGIDDVQPKKELSDKKGKLI 588
             H + +GI D++   ++ D KG ++
Sbjct:   591 HYYEMGIIDLRAIIKVRDGKGNML 614


>UNIPROTKB|E1C4T2 [details] [associations]
            symbol:POLR1A "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            InterPro:IPR007081 InterPro:IPR015699 Pfam:PF04998 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
            PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
            EMBL:AADN02014782 EMBL:AADN02014783 IPI:IPI00576593
            Ensembl:ENSGALT00000025424 ArrayExpress:E1C4T2 Uniprot:E1C4T2
        Length = 745

 Score = 183 (69.5 bits), Expect = 1.3e-37, Sum P(3) = 1.3e-37
 Identities = 36/59 (61%), Positives = 47/59 (79%)

Query:   723 MGGREGLVDTAVKTADTGYMSRR--LIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
             M GREGLVDTAVKT+ +GY+ R   +IK LE L +QYD +VR++ G +VQFLYG+DG+D
Sbjct:     1 MAGREGLVDTAVKTSRSGYLQRNRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 59

 Score = 183 (69.5 bits), Expect = 1.3e-37, Sum P(3) = 1.3e-37
 Identities = 37/94 (39%), Positives = 58/94 (61%)

Query:   903 EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK-RISTPIIT 961
             + G A+G + AQSIGEP TQMTL TFHFAG   MN+T G+PR++EI+  A   I TP+++
Sbjct:   240 DPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMS 299

Query:   962 AE-LECNDNENAARVVKGRIEKTLLGQVAKSIKI 994
                L         + +K ++ +  L +V + +++
Sbjct:   300 VPVLGTKKAHKKVKQLKKQLTRVCLAEVLQKVEL 333

 Score = 182 (69.1 bits), Expect = 1.3e-37, Sum P(3) = 1.3e-37
 Identities = 46/141 (32%), Positives = 71/141 (50%)

Query:  1108 LLVEGTGLQAVMGAEGI-DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  EG  L  +     I D  +  SN I  + +  GIE+A   +I EI +    +G+ +D
Sbjct:   603 LHTEGINLAELFRYSDILDLNRLYSNDIHAMAKNYGIESALRVVIKEIKDVFAVYGIVVD 662

Query:  1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
              RH+ L+AD M F G    + RFGIQ    S L   +FE +   L  A++ G  D +   
Sbjct:   663 PRHLSLVADYMCFEGVYKPMNRFGIQS-SSSPLQQMTFETSYKFLKEATMMGAHDELRSP 721

Query:  1227 SECIIMGIPMPLGTGILKIRQ 1247
             S C+++G  +  GTG+  ++Q
Sbjct:   722 SACLVLGKVVKGGTGLFDLKQ 742

 Score = 45 (20.9 bits), Expect = 2.1e-23, Sum P(4) = 2.1e-23
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query:   567 FSIGIDDVQ-PKKE-LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAV 622
             F  G D +  PK + L  ++   I++NYEV   K    NE   +++    A Q  +A+
Sbjct:    51 FLYGEDGLDIPKTQFLQPEQFPFIADNYEVIQ-KTNHLNEALARMESH-QAKQQFKAI 106

 Score = 45 (20.9 bits), Expect = 2.1e-23, Sum P(4) = 2.1e-23
 Identities = 27/121 (22%), Positives = 56/121 (46%)

Query:   741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF-DRL--- 796
             + +++  KA+     ++ NSV+  GG +   L+    M     +   GE +N  D     
Sbjct:    97 HQAKQQFKAIRKWWARHQNSVQREGGFL---LFSQKKMASVKTQIPGGESINGRDPATLQ 153

Query:   797 LMKVKATCPPAGQR-YLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFE-GQQDKLDK 854
             L+K+        +R YL  ++ ++  +  LA +  +S    +  S+ + FE G +D ++K
Sbjct:   154 LLKMWYELDEKKRRKYL--KKANKCPDPSLAVWRPDS----YFASVSETFESGVEDYINK 207

Query:   855 K 855
             +
Sbjct:   208 R 208

 Score = 43 (20.2 bits), Expect = 4.0e-23, Sum P(3) = 4.0e-23
 Identities = 23/82 (28%), Positives = 34/82 (41%)

Query:   223 KRVEYTGRTVISPDPNLKITEVAIPIRMARIL-TYPERVSDHNIEKLRQCIQNGPDKYPG 281
             KR +Y  +    PDP+L +         A +  T+   V D+ I K R+C   G    P 
Sbjct:   165 KRRKYLKKANKCPDPSLAVWRP--DSYFASVSETFESGVEDY-INK-RECKSRGGCMQPA 220

Query:   282 ARMIRYPDGTARVLYGKFRNQL 303
                 R  D    +LY K++  L
Sbjct:   221 LSSDRLKD----LLYLKWQRSL 238

 Score = 39 (18.8 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query:   912 GAQSIGEPGTQMTLKT-FHFAGVASM 936
             G QS   P  QMT +T + F   A+M
Sbjct:   686 GIQSSSSPLQQMTFETSYKFLKEATM 711

 Score = 37 (18.1 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query:   373 PQTEEARTEALLLMGVQNNLCTPKNGEILVAS 404
             P     R + LL +  Q +LC P     L+A+
Sbjct:   219 PALSSDRLKDLLYLKWQRSLCDPGEAVGLLAA 250

 Score = 37 (18.1 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query:   349 LRFNESVCNPYNADFD-GDEMNMHVPQTEEARTE 381
             +R N+     Y ++ + G+E     P+ EEA +E
Sbjct:   450 MRRNQEEEVDYESEEENGEENTAENPEDEEAESE 483


>TAIR|locus:2015163 [details] [associations]
            symbol:NRPD1A "nuclear RNA polymerase D1A" species:3702
            "Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
            [GO:0006346 "methylation-dependent chromatin silencing"
            evidence=RCA;IMP] [GO:0030422 "production of siRNA involved in RNA
            interference" evidence=IGI;IMP] [GO:0031047 "gene silencing by RNA"
            evidence=RCA;IMP] [GO:0000418 "DNA-directed RNA polymerase IV
            complex" evidence=IDA;IPI] [GO:0007267 "cell-cell signaling"
            evidence=RCA;IMP] [GO:0016246 "RNA interference" evidence=RCA;IMP]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0010495
            "long-distance posttranscriptional gene silencing" evidence=IMP]
            [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006306 "DNA
            methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
            evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
            evidence=RCA] [GO:0009616 "virus induced gene silencing"
            evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
            interference" evidence=RCA] [GO:0016569 "covalent chromatin
            modification" evidence=RCA] [GO:0031048 "chromatin silencing by
            small RNA" evidence=RCA] [GO:0035196 "production of miRNAs involved
            in gene silencing by miRNA" evidence=RCA] [GO:0051567 "histone
            H3-K9 methylation" evidence=RCA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015801
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011000
            GO:GO:0003677 GO:GO:0007267 GO:GO:0006351 GO:GO:0005507
            GO:GO:0048038 GO:GO:0009308 Gene3D:3.10.450.40 GO:GO:0030422
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0006346
            EMBL:AC010795 EMBL:AY826515 EMBL:DQ020657 IPI:IPI00523111
            PIR:D96655 RefSeq:NP_001185298.1 RefSeq:NP_176490.2
            UniGene:At.36192 ProteinModelPortal:Q9LQ02 SMR:Q9LQ02
            DIP:DIP-48679N STRING:Q9LQ02 PaxDb:Q9LQ02 PRIDE:Q9LQ02
            EnsemblPlants:AT1G63020.1 EnsemblPlants:AT1G63020.2 GeneID:842605
            KEGG:ath:AT1G63020 TAIR:At1g63020 eggNOG:COG0086
            HOGENOM:HOG000083760 InParanoid:Q9LQ02 KO:K16250 OMA:HQHSLIA
            PhylomeDB:Q9LQ02 ProtClustDB:CLSN2680546 Genevestigator:Q9LQ02
            GO:GO:0000418 GO:GO:0010495 InterPro:IPR021602 Pfam:PF11523
            Uniprot:Q9LQ02
        Length = 1453

 Score = 408 (148.7 bits), Expect = 3.5e-36, Sum P(3) = 3.5e-36
 Identities = 188/667 (28%), Positives = 293/667 (43%)

Query:   163 EANSAFKSLAGWE--TLQV-----EVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGR 215
             E    +K L G+E  TL++     E  QY       V  S   A P        K    R
Sbjct:   248 ERTRIYKKLVGFEGNTLELSSRVMECMQYSRLFSETVSSSKDSANPYQKKSDTPKLCGLR 307

Query:   216 FRGN-LSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQN 274
             F  + L GKR ++T RTV+  DP+LK+ E+ IP  +A+ L   E ++  N E+L      
Sbjct:   308 FMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERLVTSFV- 366

Query:   275 GPDKYPGARM-IRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHR 333
              P       M +R  D    +           +L++G  + R L DGD VL NR PS+H+
Sbjct:   367 -PTLLDNKEMHVRRGDRLVAIQVN--------DLQTGDKIFRSLMDGDTVLMNRPPSIHQ 417

Query:   334 MSIMCHRARIMPWRTL-RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
              S++    RI+P  ++   N   C P+  DFDGD ++ +VPQ+ +A+ E   L+ +   L
Sbjct:   418 HSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQL 477

Query:   393 CTPKNGEILVASTQDFLTSSFLIT-RKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILK- 450
                +NG  L++  QD LT+++L+   K+ + +RA    +  Y         LP PAI+K 
Sbjct:   478 INRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCP-----FQLPPPAIIKA 532

Query:   451 -PVEL---WTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPND 506
              P      WTG QLF +L  P  +    +N  V        L  +EG   +R       D
Sbjct:   533 SPSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSN--GELLSFSEGSAWLR-------D 583

Query:   507 GFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHG 566
             G   F    L+    GK      +   + S  L   G   +   +   + L +R      
Sbjct:   584 GEGNFIE-RLLKHDKGKVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEE 642

Query:   567 FSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ-LKPGCDAAQTLEAVITD 625
              S G+ + +   ++ +K+  ++    +   V  ++  E  +  L   C   Q   A +++
Sbjct:   643 ISYGLREAE---QVCNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQK-SATLSE 698

Query:   626 ILNRIREDAGKACMGSLPWR-----NSPLIMSQCGSKGSPINISQMVACVGQQ------S 674
             +     +DA +    +L +R     NS LIMS+ GSKG+   + Q   C+G Q      S
Sbjct:   699 LAVSAFKDAYRDVQ-ALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLS 757

Query:   675 VGGRRAPN--GFIDRSLPHFPRKAKEPAAK------GFVANSFYSGLSATEFFFHTMGGR 726
              G  R      + D + P    K K+          G + NSF +GL+  E F H++  R
Sbjct:   758 FGFPRELTCAAWNDPNSPLRGAKGKDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTSR 817

Query:   727 EGLVDTAVKTADT-GYMSRRLIKALEDLSIQYDNSVRNA-GGCIVQFLYGDDGMDPANME 784
             +         AD  G +SRRL+  + D+   YD +VRN+ G  +VQF Y  DG  P  +E
Sbjct:   818 DSSFSG---NADLPGTLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDG--P--VE 870

Query:   785 GKSGEPL 791
               +GE L
Sbjct:   871 DITGEAL 877

 Score = 88 (36.0 bits), Expect = 3.5e-36, Sum P(3) = 3.5e-36
 Identities = 27/123 (21%), Positives = 52/123 (42%)

Query:  1124 IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
             ID  ++  ++I +     GI+A R   +  +   +   G  I + H++L+AD ++  GE 
Sbjct:  1137 IDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKEILREHLLLVADSLSVTGEF 1196

Query:  1184 LGITRFGIQKMDK-----SVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
             + +   G  K  +     +    A F   +     A+  G  D ++G  + +  G     
Sbjct:  1197 VALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRDDLQGSIDALAWGKVPGF 1256

Query:  1239 GTG 1241
             GTG
Sbjct:  1257 GTG 1259

 Score = 41 (19.5 bits), Expect = 3.5e-36, Sum P(3) = 3.5e-36
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query:  1008 DMETIQDAHLCINADIV---KESIVQTPKIKL 1036
             D + ++D ++CI   +V   K S+++   I+L
Sbjct:  1034 DDQAMKDDNVCITVTVVEASKHSVLELDAIRL 1065


>TAIR|locus:2061151 [details] [associations]
            symbol:NRPD1B "nuclear RNA polymerase D1B" species:3702
            "Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=ISS]
            [GO:0000418 "DNA-directed RNA polymerase IV complex" evidence=IPI]
            [GO:0006306 "DNA methylation" evidence=RCA;IMP] [GO:0000419
            "DNA-directed RNA polymerase V complex" evidence=IDA;IPI]
            [GO:0030880 "RNA polymerase complex" evidence=IPI] [GO:0035194
            "posttranscriptional gene silencing by RNA" evidence=IMP]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0016604 "nuclear body" evidence=IDA] [GO:0030422
            "production of siRNA involved in RNA interference"
            evidence=IGI;IMP] [GO:0000278 "mitotic cell cycle" evidence=RCA]
            [GO:0000724 "double-strand break repair via homologous
            recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
            replication" evidence=RCA] [GO:0006275 "regulation of DNA
            replication" evidence=RCA] [GO:0006342 "chromatin silencing"
            evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
            evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
            [GO:0016444 "somatic cell DNA recombination" evidence=RCA]
            [GO:0016568 "chromatin modification" evidence=RCA] [GO:0031047
            "gene silencing by RNA" evidence=RCA] [GO:0048451 "petal formation"
            evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
            [GO:0051567 "histone H3-K9 methylation" evidence=RCA] [GO:0051726
            "regulation of cell cycle" evidence=RCA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR015801 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 SMART:SM00663 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006351 GO:GO:0005507 GO:GO:0048038 GO:GO:0009308
            Gene3D:3.10.450.40 GO:GO:0030422 GO:GO:0006306 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0016604 EMBL:AF002109 GO:GO:0003899
            eggNOG:COG0086 GO:GO:0000418 InterPro:IPR021602 Pfam:PF11523
            EMBL:AY826516 EMBL:AY927744 EMBL:DQ020656 IPI:IPI00537496
            PIR:D84824 PIR:E84824 RefSeq:NP_181532.2 UniGene:At.37106
            ProteinModelPortal:Q5D869 SMR:Q5D869 DIP:DIP-48678N IntAct:Q5D869
            STRING:Q5D869 PaxDb:Q5D869 PRIDE:Q5D869 EnsemblPlants:AT2G40030.1
            GeneID:818591 KEGG:ath:AT2G40030 TAIR:At2g40030
            HOGENOM:HOG000082864 InParanoid:Q5D869 KO:K16251 OMA:QSDSWDG
            PhylomeDB:Q5D869 ProtClustDB:CLSN2681712 Genevestigator:Q5D869
            GO:GO:0000419 Uniprot:Q5D869
        Length = 1976

 Score = 275 (101.9 bits), Expect = 3.1e-30, Sum P(4) = 3.1e-30
 Identities = 97/364 (26%), Positives = 171/364 (46%)

Query:   113 EKLIITNIAVPPIAIRPSVIMDGSQSNEND-----ITERLKRIIQTNASLQQEL------ 161
             E  I+  + VPP  +      DG  +   D     + + LK++I   +S   E       
Sbjct:   204 EGYILEYLPVPPNCLSVPEASDGFSTMSVDPSRIELKDVLKKVIAIKSSRSGETNFESHK 263

Query:   162 VEANSAFKSLAGWETLQVEVAQYINSDVR-GVPFSMQVARPLSGFVQRLKGKQGRFRGNL 220
              EA+  F+ +  +  ++       N D+R GV   +  +     + ++++    R +G  
Sbjct:   264 AEASEMFRVVDTYLQVRGTAKAARNIDMRYGVS-KISDSSSSKAWTEKMRTLFIR-KG-- 319

Query:   221 SGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYP 280
             SG    ++ R+VI+ D    + EV IPI +A+ +T+ ERVS HN   L++ +    DK  
Sbjct:   320 SG----FSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNRGYLQKLVD---DKL- 371

Query:   281 GARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
                 + Y  G+      +  ++   ELK G +V R + DGDVV  NR P+ H+ S+   R
Sbjct:   372 ---CLSYTQGSTTYSL-RDGSKGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALR 427

Query:   341 ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
               +    T++ N  +C+P +ADFDGD +++  PQ+  A+ E + L  V+  L +   G++
Sbjct:   428 VYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQL 487

Query:   401 LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
             ++    D L S  ++  +  F D+A    +  Y G     + LP PA+ K  +      +
Sbjct:   488 ILQMGSDSLLSLRVMLER-VFLDKATAQQLAMY-GS----LSLPPPALRKSSKSGPAWTV 541

Query:   461 FSVL 464
             F +L
Sbjct:   542 FQIL 545

 Score = 128 (50.1 bits), Expect = 3.1e-30, Sum P(4) = 3.1e-30
 Identities = 66/294 (22%), Positives = 120/294 (40%)

Query:   503 CPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWI 562
             C  D F+    S+L+    G   +G+   + + S+ L + G   T G  + L  L    +
Sbjct:   555 CKGDRFLV-DGSDLLKFDFGVDAMGSIINEIVTSIFL-EKGPKETLGFFDSLQPLLMESL 612

Query:   563 GNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAV 622
                GFS+ ++D+   +   D    LI         +++     +LQL+            
Sbjct:   613 FAEGFSLSLEDLSMSRADMDVIHNLIIREISPMVSRLRLSYRDELQLE------------ 660

Query:   623 ITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPN 682
               + +++++E A    + S   RN  LI     S  +   + Q    +G Q    ++   
Sbjct:   661 --NSIHKVKEVAANFMLKSYSIRN--LI--DIKSNSAITKLVQQTGFLGLQLSDKKKFYT 714

Query:   683 GFIDRSLPHF-PRKAKEPAAKG---FVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
               +   +  F  RK    ++ G    V   F+ GL   E   H++  RE +V ++   A+
Sbjct:   715 KTLVEDMAIFCKRKYGRISSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAE 774

Query:   739 TGYMSRRLIKALEDLSIQYDNSVRNA-GGCIVQFLYGDDGMDPANMEGKSGEPL 791
              G + + L+  L D+ I  D +VRN     ++QF YG D         ++GEP+
Sbjct:   775 PGTLFKNLMAVLRDIVITNDGTVRNTCSNSVIQFKYGVDSERGHQGLFEAGEPV 828

 Score = 84 (34.6 bits), Expect = 3.1e-30, Sum P(4) = 3.1e-30
 Identities = 21/81 (25%), Positives = 43/81 (53%)

Query:  1124 IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
             ID  ++    + +VQ+ LG+  A    +  ++ +++     + K H++LLA+ MT  G +
Sbjct:  1102 IDTKRSIPYSVKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHIILLANNMTCSGTM 1161

Query:  1184 LGITRFGIQKMDKSVLMLASF 1204
             LG    G + + +S+ + A F
Sbjct:  1162 LGFNSGGYKALTRSLNIKAPF 1182

 Score = 52 (23.4 bits), Expect = 3.1e-30, Sum P(4) = 3.1e-30
 Identities = 27/143 (18%), Positives = 56/143 (39%)

Query:   903 EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITA 962
             EAG  +G + A ++  P  +  L +   +  +S  + + V   K            I+  
Sbjct:   823 EAGEPVGVLAATAMSNPAYKAVLDSSPNSN-SSWELMKEVLLCKVNFQNTTNDRRVILYL 881

Query:   963 -ELECNDN---ENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLC 1018
              E  C      ENAA  V+ ++ K  L   A    +V   +  +I     +++    H+ 
Sbjct:   882 NECHCGKRFCQENAACTVRNKLNKVSLKDTAVEF-LVEYRKQPTISEIFGIDSCLHGHIH 940

Query:  1019 INADIVKESIVQTPKIKLKQQHI 1041
             +N  ++++  +    I  K + +
Sbjct:   941 LNKTLLQDWNISMQDIHQKCEDV 963

 Score = 39 (18.8 bits), Expect = 5.4e-06, Sum P(4) = 5.4e-06
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query:   302 QLAVELKSGCIVDRHLEDG-DVVLFN 326
             QLA   +  C  DR L DG D++ F+
Sbjct:   546 QLAFPERLSCKGDRFLVDGSDLLKFD 571


>UNIPROTKB|P0C504 [details] [associations]
            symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
            species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
            GO:GO:0006351 EMBL:AY522331 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 HAMAP:MF_01323 ProteinModelPortal:P0C504
            Gramene:P0C504 HOGENOM:HOG000054284 Genevestigator:P0C504
            Uniprot:P0C504
        Length = 682

 Score = 198 (74.8 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
 Identities = 40/97 (41%), Positives = 59/97 (60%)

Query:   320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
             G  VL NR P+LHR+ I   +  ++  RT+  +  VC  +NADFDGD+M +H+P + EA+
Sbjct:   447 GHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQ 506

Query:   380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
              EA LLM    NL +P  G+ +   TQD L   +++T
Sbjct:   507 AEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLT 543

 Score = 178 (67.7 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
 Identities = 49/165 (29%), Positives = 82/165 (49%)

Query:    89 VNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLK 148
             +  +FL +RM       +  +  PE +++  + V P  +RP V   G +   +DI E  K
Sbjct:   239 IRKVFLIRRMQLAK-HFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYK 297

Query:   149 RIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQVARPLSGFV 206
             R+I+ N +L   L  +  A   L   +   +Q  V   ++S  RG P      +      
Sbjct:   298 RVIRRNNNLAYLLKRSELAPADLVMCQEKLVQEAVDTLLDSGSRGQPTRDGHNKVYKSLS 357

Query:   207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMA 251
               ++GK+GRFR  L GKRV+Y+GR+VI   P+L + +  +P+ +A
Sbjct:   358 DVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIA 402


>UNIPROTKB|P0C505 [details] [associations]
            symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
            species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
            evidence=IC] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
            GO:GO:0003677 GO:GO:0006351 EMBL:AY522329 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 ProtClustDB:CHL00018
            HAMAP:MF_01323 RefSeq:YP_654207.2 ProteinModelPortal:P0C505
            GeneID:4126923 Gramene:P0C505 Uniprot:P0C505
        Length = 682

 Score = 198 (74.8 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
 Identities = 40/97 (41%), Positives = 59/97 (60%)

Query:   320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
             G  VL NR P+LHR+ I   +  ++  RT+  +  VC  +NADFDGD+M +H+P + EA+
Sbjct:   447 GHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQ 506

Query:   380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
              EA LLM    NL +P  G+ +   TQD L   +++T
Sbjct:   507 AEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLT 543

 Score = 178 (67.7 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
 Identities = 49/165 (29%), Positives = 82/165 (49%)

Query:    89 VNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLK 148
             +  +FL +RM       +  +  PE +++  + V P  +RP V   G +   +DI E  K
Sbjct:   239 IRKVFLIRRMQLAK-HFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYK 297

Query:   149 RIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQVARPLSGFV 206
             R+I+ N +L   L  +  A   L   +   +Q  V   ++S  RG P      +      
Sbjct:   298 RVIRRNNNLAYLLKRSELAPADLVMCQEKLVQEAVDTLLDSGSRGQPTRDGHNKVYKSLS 357

Query:   207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMA 251
               ++GK+GRFR  L GKRV+Y+GR+VI   P+L + +  +P+ +A
Sbjct:   358 DVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIA 402


>UNIPROTKB|P0C506 [details] [associations]
            symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
            species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
            evidence=IC] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
            GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
            GenomeReviews:AY522330_GR Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 eggNOG:COG0086 ProtClustDB:CHL00018 HAMAP:MF_01323
            PIR:JQ0214 RefSeq:NP_039374.1 ProteinModelPortal:P0C506
            STRING:P0C506 EnsemblPlants:LOC_Osp1g00250.1 GeneID:3131433
            KEGG:osa:3131433 Gramene:P0C506 KO:K03046 OMA:VIDNFIA
            Uniprot:P0C506
        Length = 682

 Score = 198 (74.8 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
 Identities = 40/97 (41%), Positives = 59/97 (60%)

Query:   320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
             G  VL NR P+LHR+ I   +  ++  RT+  +  VC  +NADFDGD+M +H+P + EA+
Sbjct:   447 GHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQ 506

Query:   380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
              EA LLM    NL +P  G+ +   TQD L   +++T
Sbjct:   507 AEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLT 543

 Score = 178 (67.7 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
 Identities = 49/165 (29%), Positives = 82/165 (49%)

Query:    89 VNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLK 148
             +  +FL +RM       +  +  PE +++  + V P  +RP V   G +   +DI E  K
Sbjct:   239 IRKVFLIRRMQLAK-HFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYK 297

Query:   149 RIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQVARPLSGFV 206
             R+I+ N +L   L  +  A   L   +   +Q  V   ++S  RG P      +      
Sbjct:   298 RVIRRNNNLAYLLKRSELAPADLVMCQEKLVQEAVDTLLDSGSRGQPTRDGHNKVYKSLS 357

Query:   207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMA 251
               ++GK+GRFR  L GKRV+Y+GR+VI   P+L + +  +P+ +A
Sbjct:   358 DVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIA 402


>UNIPROTKB|Q6ENI3 [details] [associations]
            symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
            species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AP006728
            GO:GO:0003899 RefSeq:YP_052740.1 ProteinModelPortal:Q6ENI3
            GeneID:2885900 Gramene:Q6ENI3 ProtClustDB:CHL00018 HAMAP:MF_01323
            Uniprot:Q6ENI3
        Length = 682

 Score = 198 (74.8 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
 Identities = 40/97 (41%), Positives = 59/97 (60%)

Query:   320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
             G  VL NR P+LHR+ I   +  ++  RT+  +  VC  +NADFDGD+M +H+P + EA+
Sbjct:   447 GHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQ 506

Query:   380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
              EA LLM    NL +P  G+ +   TQD L   +++T
Sbjct:   507 AEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLT 543

 Score = 178 (67.7 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
 Identities = 49/165 (29%), Positives = 82/165 (49%)

Query:    89 VNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLK 148
             +  +FL +RM       +  +  PE +++  + V P  +RP V   G +   +DI E  K
Sbjct:   239 IRKVFLIRRMQLAK-HFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYK 297

Query:   149 RIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQVARPLSGFV 206
             R+I+ N +L   L  +  A   L   +   +Q  V   ++S  RG P      +      
Sbjct:   298 RVIRRNNNLAYLLKRSELAPADLVMCQEKLVQEAVDTLLDSGSRGQPTRDGHNKVYKSLS 357

Query:   207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMA 251
               ++GK+GRFR  L GKRV+Y+GR+VI   P+L + +  +P+ +A
Sbjct:   358 DVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIA 402


>UNIPROTKB|P0C507 [details] [associations]
            symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
            species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
            HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
            GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AY522331
            GO:GO:0003899 TIGRFAMs:TIGR02388 ProteinModelPortal:P0C507
            Gramene:P0C507 HOGENOM:HOG000154184 Genevestigator:P0C507
            Uniprot:P0C507
        Length = 1513

 Score = 124 (48.7 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
 Identities = 21/52 (40%), Positives = 37/52 (71%)

Query:   705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
             + ++   GLS TE+     G R+G+VDTAV+TAD GY++RRL++ ++ + ++
Sbjct:   165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVR 216

 Score = 121 (47.7 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
 Identities = 25/45 (55%), Positives = 29/45 (64%)

Query:   891 QTCFSRYRVKR--VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGV 933
             Q C+ R       VE G A+G I  QSIGEPGTQ+TL+TFH  GV
Sbjct:   304 QLCYGRSSTHGDLVELGEAVGVIAGQSIGEPGTQLTLRTFHTGGV 348

 Score = 112 (44.5 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
 Identities = 27/76 (35%), Positives = 46/76 (60%)

Query:  1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232
             L + + +R  +LGITR  +    +S +  ASF++TA  L  A++ GR D ++G+ E +++
Sbjct:  1386 LDESIYYRAILLGITRVSLNT--QSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 1443

Query:  1233 GIPMPLGTGILKIRQR 1248
             G  +P+GTG  K   R
Sbjct:  1444 GGIIPVGTGFQKFVHR 1459

 Score = 66 (28.3 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query:   925 LKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECND-NENAARVVKG 978
             L TF +    S +ITQG+P++++I   A+ I +     E    D NE   R++ G
Sbjct:  1254 LVTFIYEKARSSDITQGLPKVEQIFE-ARSIDSLSPNLERRIEDWNERIPRILGG 1307

 Score = 57 (25.1 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
 Identities = 12/49 (24%), Positives = 27/49 (55%)

Query:  1135 FEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
             F +   L I  +RI ++++I +  ++ G+ I  RH+ ++   +T +  V
Sbjct:  1311 FLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRV 1359

 Score = 44 (20.5 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query:   879 SGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIG 917
             +G+TEK   +F+QT   R     +  G+   A   Q IG
Sbjct:   232 NGMTEK---LFVQTLIGRVLANDIYIGSRCIATRNQDIG 267

 Score = 42 (19.8 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
 Identities = 28/138 (20%), Positives = 55/138 (39%)

Query:   534 LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYE 593
             L S L+  +G   TS  ++++  L          S+GI+D+         KG L+ +  +
Sbjct:    22 LISRLIDHFGMGYTSHILDQIKTLGFHQATTTSISLGIEDLLT----IPSKGWLVQDAEQ 77

Query:   594 VCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQ 653
                +  K Y  G +         Q++E +       ++ +       + P  N   +MS 
Sbjct:    78 QSFLLEKHYYYGAVHAVE--KLRQSVE-IWYATSEYLKHEMNSNFRITDP-SNPVYLMSF 133

Query:   654 CGSKGSPINISQMVACVG 671
              G++G+   + Q+V   G
Sbjct:   134 SGARGNASQVHQLVGMRG 151

 Score = 37 (18.1 bits), Expect = 1.9e-15, Sum P(4) = 1.9e-15
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query:   263 HNIEKLRQCIQ 273
             H +EKLRQ ++
Sbjct:    92 HAVEKLRQSVE 102


>UNIPROTKB|P0C508 [details] [associations]
            symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
            species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
            evidence=IC] HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
            GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AY522329
            GO:GO:0003899 ProtClustDB:CHL00117 TIGRFAMs:TIGR02388
            RefSeq:YP_654208.1 ProteinModelPortal:P0C508 GeneID:4126924
            Gramene:P0C508 Uniprot:P0C508
        Length = 1513

 Score = 124 (48.7 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
 Identities = 21/52 (40%), Positives = 37/52 (71%)

Query:   705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
             + ++   GLS TE+     G R+G+VDTAV+TAD GY++RRL++ ++ + ++
Sbjct:   165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVR 216

 Score = 121 (47.7 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
 Identities = 25/45 (55%), Positives = 29/45 (64%)

Query:   891 QTCFSRYRVKR--VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGV 933
             Q C+ R       VE G A+G I  QSIGEPGTQ+TL+TFH  GV
Sbjct:   304 QLCYGRSSTHGDLVELGEAVGVIAGQSIGEPGTQLTLRTFHTGGV 348

 Score = 112 (44.5 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
 Identities = 27/76 (35%), Positives = 46/76 (60%)

Query:  1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232
             L + + +R  +LGITR  +    +S +  ASF++TA  L  A++ GR D ++G+ E +++
Sbjct:  1386 LDESIYYRAILLGITRVSLNT--QSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 1443

Query:  1233 GIPMPLGTGILKIRQR 1248
             G  +P+GTG  K   R
Sbjct:  1444 GGIIPVGTGFQKFVHR 1459

 Score = 66 (28.3 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query:   925 LKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECND-NENAARVVKG 978
             L TF +    S +ITQG+P++++I   A+ I +     E    D NE   R++ G
Sbjct:  1254 LVTFIYEKARSSDITQGLPKVEQIFE-ARSIDSLSPNLERRIEDWNERIPRILGG 1307

 Score = 57 (25.1 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
 Identities = 12/49 (24%), Positives = 27/49 (55%)

Query:  1135 FEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
             F +   L I  +RI ++++I +  ++ G+ I  RH+ ++   +T +  V
Sbjct:  1311 FLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRV 1359

 Score = 44 (20.5 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query:   879 SGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIG 917
             +G+TEK   +F+QT   R     +  G+   A   Q IG
Sbjct:   232 NGMTEK---LFVQTLIGRVLANDIYIGSRCIATRNQDIG 267

 Score = 42 (19.8 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
 Identities = 28/138 (20%), Positives = 55/138 (39%)

Query:   534 LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYE 593
             L S L+  +G   TS  ++++  L          S+GI+D+         KG L+ +  +
Sbjct:    22 LISRLIDHFGMGYTSHILDQIKTLGFHQATTTSISLGIEDLLT----IPSKGWLVQDAEQ 77

Query:   594 VCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQ 653
                +  K Y  G +         Q++E +       ++ +       + P  N   +MS 
Sbjct:    78 QSFLLEKHYYYGAVHAVE--KLRQSVE-IWYATSEYLKHEMNSNFRITDP-SNPVYLMSF 133

Query:   654 CGSKGSPINISQMVACVG 671
              G++G+   + Q+V   G
Sbjct:   134 SGARGNASQVHQLVGMRG 151

 Score = 37 (18.1 bits), Expect = 1.9e-15, Sum P(4) = 1.9e-15
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query:   263 HNIEKLRQCIQ 273
             H +EKLRQ ++
Sbjct:    92 HAVEKLRQSVE 102


>UNIPROTKB|P0C509 [details] [associations]
            symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
            species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
            evidence=IC] HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
            GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
            GO:GO:0003899 eggNOG:COG0086 KO:K03046 ProtClustDB:CHL00117
            TIGRFAMs:TIGR02388 PIR:JQ0215 RefSeq:NP_039375.1
            ProteinModelPortal:P0C509 STRING:P0C509 GeneID:3131434
            KEGG:osa:3131434 Gramene:P0C509 Uniprot:P0C509
        Length = 1513

 Score = 124 (48.7 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
 Identities = 21/52 (40%), Positives = 37/52 (71%)

Query:   705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
             + ++   GLS TE+     G R+G+VDTAV+TAD GY++RRL++ ++ + ++
Sbjct:   165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVR 216

 Score = 121 (47.7 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
 Identities = 25/45 (55%), Positives = 29/45 (64%)

Query:   891 QTCFSRYRVKR--VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGV 933
             Q C+ R       VE G A+G I  QSIGEPGTQ+TL+TFH  GV
Sbjct:   304 QLCYGRSSTHGDLVELGEAVGVIAGQSIGEPGTQLTLRTFHTGGV 348

 Score = 112 (44.5 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
 Identities = 27/76 (35%), Positives = 46/76 (60%)

Query:  1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232
             L + + +R  +LGITR  +    +S +  ASF++TA  L  A++ GR D ++G+ E +++
Sbjct:  1386 LDESIYYRAILLGITRVSLNT--QSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 1443

Query:  1233 GIPMPLGTGILKIRQR 1248
             G  +P+GTG  K   R
Sbjct:  1444 GGIIPVGTGFQKFVHR 1459

 Score = 66 (28.3 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query:   925 LKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECND-NENAARVVKG 978
             L TF +    S +ITQG+P++++I   A+ I +     E    D NE   R++ G
Sbjct:  1254 LVTFIYEKARSSDITQGLPKVEQIFE-ARSIDSLSPNLERRIEDWNERIPRILGG 1307

 Score = 57 (25.1 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
 Identities = 12/49 (24%), Positives = 27/49 (55%)

Query:  1135 FEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
             F +   L I  +RI ++++I +  ++ G+ I  RH+ ++   +T +  V
Sbjct:  1311 FLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRV 1359

 Score = 44 (20.5 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query:   879 SGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIG 917
             +G+TEK   +F+QT   R     +  G+   A   Q IG
Sbjct:   232 NGMTEK---LFVQTLIGRVLANDIYIGSRCIATRNQDIG 267

 Score = 42 (19.8 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
 Identities = 28/138 (20%), Positives = 55/138 (39%)

Query:   534 LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYE 593
             L S L+  +G   TS  ++++  L          S+GI+D+         KG L+ +  +
Sbjct:    22 LISRLIDHFGMGYTSHILDQIKTLGFHQATTTSISLGIEDLLT----IPSKGWLVQDAEQ 77

Query:   594 VCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQ 653
                +  K Y  G +         Q++E +       ++ +       + P  N   +MS 
Sbjct:    78 QSFLLEKHYYYGAVHAVE--KLRQSVE-IWYATSEYLKHEMNSNFRITDP-SNPVYLMSF 133

Query:   654 CGSKGSPINISQMVACVG 671
              G++G+   + Q+V   G
Sbjct:   134 SGARGNASQVHQLVGMRG 151

 Score = 37 (18.1 bits), Expect = 1.9e-15, Sum P(4) = 1.9e-15
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query:   263 HNIEKLRQCIQ 273
             H +EKLRQ ++
Sbjct:    92 HAVEKLRQSVE 102


>UNIPROTKB|Q6ENI2 [details] [associations]
            symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
            species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
            HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
            GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AP006728
            GO:GO:0003899 RefSeq:YP_052741.1 ProteinModelPortal:Q6ENI2
            GeneID:2885930 Gramene:Q6ENI2 ProtClustDB:CHL00117
            TIGRFAMs:TIGR02388 Uniprot:Q6ENI2
        Length = 1513

 Score = 124 (48.7 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
 Identities = 21/52 (40%), Positives = 37/52 (71%)

Query:   705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
             + ++   GLS TE+     G R+G+VDTAV+TAD GY++RRL++ ++ + ++
Sbjct:   165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVR 216

 Score = 121 (47.7 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
 Identities = 25/45 (55%), Positives = 29/45 (64%)

Query:   891 QTCFSRYRVKR--VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGV 933
             Q C+ R       VE G A+G I  QSIGEPGTQ+TL+TFH  GV
Sbjct:   304 QLCYGRSSTHGDLVELGEAVGVIAGQSIGEPGTQLTLRTFHTGGV 348

 Score = 112 (44.5 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
 Identities = 27/76 (35%), Positives = 46/76 (60%)

Query:  1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232
             L + + +R  +LGITR  +    +S +  ASF++TA  L  A++ GR D ++G+ E +++
Sbjct:  1386 LDESIYYRAILLGITRVSLNT--QSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 1443

Query:  1233 GIPMPLGTGILKIRQR 1248
             G  +P+GTG  K   R
Sbjct:  1444 GGIIPVGTGFQKFVHR 1459

 Score = 66 (28.3 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query:   925 LKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECND-NENAARVVKG 978
             L TF +    S +ITQG+P++++I   A+ I +     E    D NE   R++ G
Sbjct:  1254 LVTFIYEKARSSDITQGLPKVEQIFE-ARSIDSLSPNLERRIEDWNERIPRILGG 1307

 Score = 57 (25.1 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
 Identities = 12/49 (24%), Positives = 27/49 (55%)

Query:  1135 FEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
             F +   L I  +RI ++++I +  ++ G+ I  RH+ ++   +T +  V
Sbjct:  1311 FLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRV 1359

 Score = 44 (20.5 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query:   879 SGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIG 917
             +G+TEK   +F+QT   R     +  G+   A   Q IG
Sbjct:   232 NGMTEK---LFVQTLIGRVLANDIYIGSRCIATRNQDIG 267

 Score = 42 (19.8 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
 Identities = 28/138 (20%), Positives = 55/138 (39%)

Query:   534 LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYE 593
             L S L+  +G   TS  ++++  L          S+GI+D+         KG L+ +  +
Sbjct:    22 LISRLIDHFGMGYTSHILDQIKTLGFHQATTTSISLGIEDLLT----IPSKGWLVQDAEQ 77

Query:   594 VCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQ 653
                +  K Y  G +         Q++E +       ++ +       + P  N   +MS 
Sbjct:    78 QSFLLEKHYYYGAVHAVE--KLRQSVE-IWYATSEYLKHEMNSNFRITDP-SNPVYLMSF 133

Query:   654 CGSKGSPINISQMVACVG 671
              G++G+   + Q+V   G
Sbjct:   134 SGARGNASQVHQLVGMRG 151

 Score = 37 (18.1 bits), Expect = 1.9e-15, Sum P(4) = 1.9e-15
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query:   263 HNIEKLRQCIQ 273
             H +EKLRQ ++
Sbjct:    92 HAVEKLRQSVE 102


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0     1265      1241   0.00079  124 3  11 22  0.38    34
                                                     39  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  89
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  493 KB (2230 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  101.97u 0.19s 102.16t   Elapsed:  00:00:05
  Total cpu time:  102.02u 0.19s 102.21t   Elapsed:  00:00:05
  Start:  Tue May 21 13:24:22 2013   End:  Tue May 21 13:24:27 2013
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with rpc1 rpc1 rpc1 RNA polymerase III, largest subunit	gene from Dictyostelium discoideum	0.
BLAST match view associations BLAST with POLR3A POLR3A POLR3A DNA-directed RNA polymerase III subunit RPC1	protein from Homo sapiens	8.3e-316
BLAST match view associations BLAST with POLR3A POLR3A POLR3A DNA-directed RNA polymerase	protein from Sus scrofa	5.8e-315
BLAST match view associations BLAST with POLR3A POLR3A POLR3A DNA-directed RNA polymerase	protein from Gallus gallus	1.9e-314
BLAST match view associations BLAST with POLR3A POLR3A POLR3A DNA-directed RNA polymerase III subunit RPC1	protein from Gallus gallus	3.9e-314
BLAST match view associations BLAST with POLR3A POLR3A POLR3A DNA-directed RNA polymerase III subunit RPC1	protein from Bos taurus	4.1e-314
BLAST match view associations BLAST with POLR3A POLR3A POLR3A DNA-directed RNA polymerase	protein from Canis lupus familiaris	5.2e-314
BLAST match view associations BLAST with polr3a polr3a polr3a polymerase (RNA) III (DNA directed) polypeptide A	gene_product from Danio rerio	1.5e-312
BLAST match view associations BLAST with RPO31 RPO31 RPO31 RNA polymerase III largest subunit C160	gene from Saccharomyces cerevisiae	3.6e-306
BLAST match view associations BLAST with POLR3A POLR3A POLR3A DNA-directed RNA polymerase	protein from Canis lupus familiaris	1.6e-301
BLAST match view associations BLAST with orf19.3103 orf19.3103 orf19.3103	gene_product from Candida albicans	1.4e-300
BLAST match view associations BLAST with rpc-1 rpc-1 rpc-1	gene from Caenorhabditis elegans	5.3e-278
BLAST match view associations BLAST with PF13_0150 PF13_0150 PF13_0150 DNA-directed RNA polymerase 3 largest subunit	gene from Plasmodium falciparum	8.9e-266
BLAST match view associations BLAST with PF13_0150 PF13_0150 PF13_0150 DNA-directed RNA polymerase	protein from Plasmodium falciparum 3D7	8.9e-266
BLAST match view associations BLAST with CG17209 CG17209 CG17209	protein from Drosophila melanogaster	8.8e-237
BLAST match view associations BLAST with POLR2A POLR2A POLR2A DNA-directed RNA polymerase	protein from Canis lupus familiaris	1.2e-180
BLAST match view associations BLAST with POLR2A POLR2A POLR2A DNA-directed RNA polymerase	protein from Bos taurus	3.7e-178
BLAST match view associations BLAST with POLR2A POLR2A POLR2A DNA-directed RNA polymerase	protein from Canis lupus familiaris	7.5e-178
BLAST match view associations BLAST with Polr2a Polr2a Polr2a polymerase (RNA) II (DNA directed) polypeptide A	gene from Rattus norvegicus	7.6e-178
BLAST match view associations BLAST with POLR2A POLR2A POLR2A DNA-directed RNA polymerase II subunit RPB1	protein from Homo sapiens	9.8e-178
BLAST match view associations BLAST with Polr2a Polr2a Polr2a polymerase (RNA) II (DNA directed) polypeptide A	protein from Mus musculus	9.8e-178
BLAST match view associations BLAST with polr2a polr2a polr2a polymerase (RNA) II (DNA directed) polypeptide A	gene_product from Danio rerio	2.5e-177
BLAST match view associations BLAST with RpII215 RpII215 RpII215 RNA polymerase II 215kD subunit	protein from Drosophila melanogaster	2.2e-175
BLAST match view associations BLAST with RPO21 RPO21 RPO21	gene_product from Candida albicans	2.2e-174
BLAST match view associations BLAST with RPO21 RPO21 RPO21 DNA-directed RNA polymerase	protein from Candida albicans SC5314	2.2e-174
BLAST match view associations BLAST with ama-1 ama-1 ama-1	gene from Caenorhabditis elegans	7.9e-174
BLAST match view associations BLAST with ama-1 ama-1 ama-1 DNA-directed RNA polymerase II subunit RPB1	protein from Caenorhabditis elegans	7.9e-174
BLAST match view associations BLAST with MGG_04652 MGG_04652 MGG_04652 DNA-directed RNA polymerase	protein from Magnaporthe oryzae 70-15	3.8e-168
BLAST match view associations BLAST with RPO21 RPO21 RPO21 RNA polymerase II largest subunit B220	gene from Saccharomyces cerevisiae	7.4e-168
BLAST match view associations BLAST with POLR2A POLR2A POLR2A DNA-directed RNA polymerase	protein from Sus scrofa	1.1e-133
BLAST match view associations BLAST with rpb1 rpb1 rpb1 RNA polymerase II core subunit	gene from Dictyostelium discoideum	1.0e-121
BLAST match view associations BLAST with POLR1A POLR1A POLR1A DNA-directed RNA polymerase	protein from Homo sapiens	2.9e-114
BLAST match view associations BLAST with RPA190 RPA190 RPA190	gene_product from Candida albicans	3.6e-114
BLAST match view associations BLAST with POLR1A POLR1A POLR1A DNA-directed RNA polymerase I subunit RPA1	protein from Homo sapiens	3.8e-114
BLAST match view associations BLAST with POLR1A POLR1A POLR1A DNA-directed RNA polymerase	protein from Sus scrofa	4.4e-114
BLAST match view associations BLAST with Polr1a Polr1a Polr1a polymerase (RNA) I polypeptide A	gene from Rattus norvegicus	7.3e-114
BLAST match view associations BLAST with Polr1a Polr1a Polr1a polymerase (RNA) I polypeptide A	protein from Mus musculus	3.3e-113
BLAST match view associations BLAST with POLR1A POLR1A POLR1A DNA-directed RNA polymerase	protein from Canis lupus familiaris	6.8e-113
BLAST match view associations BLAST with POLR1A POLR1A POLR1A DNA-directed RNA polymerase	protein from Canis lupus familiaris	7.7e-113
BLAST match view associations BLAST with POLR1A POLR1A POLR1A DNA-directed RNA polymerase	protein from Bos taurus	2.4e-112
BLAST match view associations BLAST with RPA190 RPA190 RPA190 RNA polymerase I largest subunit A190	gene from Saccharomyces cerevisiae	5.0e-111
BLAST match view associations BLAST with Polr3a Polr3a Polr3a polymerase (RNA) III (DNA directed) polypeptide A	gene from Rattus norvegicus	7.2e-107
BLAST match view associations BLAST with NRPA1 NRPA1 NRPA1 AT3G57660	protein from Arabidopsis thaliana	2.7e-105
BLAST match view associations BLAST with RpI1 RpI1 RpI1 RNA polymerase I subunit	protein from Drosophila melanogaster	7.1e-104
BLAST match view associations BLAST with polr1a polr1a polr1a polymerase (RNA) I polypeptide A	gene_product from Danio rerio	3.6e-97
BLAST match view associations BLAST with rpa1 rpa1 rpa1 RNA polymerase I, largest subunit	gene from Dictyostelium discoideum	4.1e-93
BLAST match view associations BLAST with rpoa-1 rpoa-1 rpoa-1	gene from Caenorhabditis elegans	2.4e-91
BLAST match view associations BLAST with MGG_01158 MGG_01158 MGG_01158 DNA-directed RNA polymerase	protein from Magnaporthe oryzae 70-15	7.7e-82
BLAST match view associations BLAST with POLR2A POLR2A POLR2A DNA-directed RNA polymerase	protein from Homo sapiens	2.2e-72
BLAST match view associations BLAST with BA_0103 BA_0103 BA_0103 DNA-directed RNA polymerase, beta' subunit	protein from Bacillus anthracis str. Ames	1.2e-63
BLAST match view associations BLAST with CHY_2317 CHY_2317 CHY_2317 DNA-directed RNA polymerase, beta' subunit	protein from Carboxydothermus hydrogenoformans Z-2901	2.0e-62
BLAST match view associations BLAST with rpoC rpoC rpoC DNA-directed RNA polymerase subunit beta'	protein from Bacillus subtilis subsp. subtilis str. 168	3.3e-62
BLAST match view associations BLAST with SO_0225 SO_0225 SO_0225 DNA-directed RNA polymerase, beta subunit	protein from Shewanella oneidensis MR-1	4.3e-55
BLAST match view associations BLAST with SPO_3507 SPO_3507 SPO_3507 DNA-directed RNA polymerase, beta' subunit	protein from Ruegeria pomeroyi DSS-3	8.3e-54
BLAST match view associations BLAST with rpoC rpoC rpoC RNA polymerase, beta' subunit	protein from Escherichia coli K-12	4.0e-53
BLAST match view associations BLAST with rpoC rpoC rpoC DNA-directed RNA polymerase subunit beta'	protein from Mycobacterium tuberculosis	6.0e-53
BLAST match view associations BLAST with POLR1A POLR1A POLR1A DNA-directed RNA polymerase	protein from Gallus gallus	6.5e-53
BLAST match view associations BLAST with CJE_0529 CJE_0529 CJE_0529 DNA-directed RNA polymerase, beta' subunit	protein from Campylobacter jejuni RM1221	1.1e-52
BLAST match view associations BLAST with CPS_4768 CPS_4768 CPS_4768 DNA-directed RNA polymerase, beta' subunit	protein from Colwellia psychrerythraea 34H	1.5e-52
BLAST match view associations BLAST with rpoC rpoC rpoC DNA-directed RNA polymerase subunit beta'	protein from Vibrio cholerae O1 biovar El Tor str. N16961	2.7e-51
BLAST match view associations BLAST with VC_0329 VC_0329 VC_0329 DNA-directed RNA polymerase, beta' subunit	protein from Vibrio cholerae O1 biovar El Tor	2.7e-51
BLAST match view associations BLAST with CBU_0232 CBU_0232 CBU_0232 DNA-directed RNA polymerase beta' subunit	protein from Coxiella burnetii RSA 493	1.9e-50
BLAST match view associations BLAST with H9L2Z3 H9L2Z3 H9L2Z3 DNA-directed RNA polymerase	protein from Gallus gallus	7.9e-50
BLAST match view associations BLAST with H9L2Z2 H9L2Z2 H9L2Z2 DNA-directed RNA polymerase	protein from Gallus gallus	2.3e-47
BLAST match view associations BLAST with H9L2Z0 H9L2Z0 H9L2Z0 DNA-directed RNA polymerase	protein from Gallus gallus	2.4e-47
BLAST match view associations BLAST with NSE_0677 NSE_0677 NSE_0677 DNA-directed RNA polymerase, beta' subunit	protein from Neorickettsia sennetsu str. Miyayama	1.4e-46
BLAST match view associations BLAST with H9L2Z1 H9L2Z1 H9L2Z1 DNA-directed RNA polymerase	protein from Gallus gallus	4.4e-46
BLAST match view associations BLAST with ECH_0951 ECH_0951 ECH_0951 DNA-directed RNA polymerase, beta' subunit	protein from Ehrlichia chaffeensis str. Arkansas	3.9e-45
BLAST match view associations BLAST with APH_1023 APH_1023 APH_1023 DNA-directed RNA polymerase, beta' subunit	protein from Anaplasma phagocytophilum HZ	1.0e-44
BLAST match view associations BLAST with DET_0604 DET_0604 DET_0604 DNA-directed RNA polymerase, beta' subunit	protein from Dehalococcoides ethenogenes 195	3.3e-43
BLAST match view associations BLAST with POLR1A POLR1A POLR1A Uncharacterized protein	protein from Gallus gallus	1.3e-37
BLAST match view associations BLAST with NRPD1A NRPD1A NRPD1A AT1G63020	protein from Arabidopsis thaliana	3.5e-36
BLAST match view associations BLAST with NRPD1B NRPD1B NRPD1B AT2G40030	protein from Arabidopsis thaliana	3.1e-30
BLAST match view associations BLAST with rpoC1 rpoC1 rpoC1 DNA-directed RNA polymerase subunit beta'	protein from Oryza sativa	5.6e-25
BLAST match view associations BLAST with rpoC1 rpoC1 rpoC1 DNA-directed RNA polymerase subunit beta'	protein from Oryza sativa Indica Group	5.6e-25
BLAST match view associations BLAST with rpoC1 rpoC1 rpoC1 DNA-directed RNA polymerase subunit beta'	protein from Oryza sativa Japonica Group	5.6e-25
BLAST match view associations BLAST with rpoC1 rpoC1 rpoC1 DNA-directed RNA polymerase subunit beta'	protein from Oryza nivara	5.6e-25
BLAST match view associations BLAST with rpoC2 rpoC2 rpoC2 DNA-directed RNA polymerase subunit beta''	protein from Oryza sativa	6.0e-16
BLAST match view associations BLAST with rpoC2 rpoC2 rpoC2 DNA-directed RNA polymerase subunit beta''	protein from Oryza sativa Indica Group	6.0e-16
BLAST match view associations BLAST with rpoC2 rpoC2 rpoC2 DNA-directed RNA polymerase subunit beta''	protein from Oryza sativa Japonica Group	6.0e-16
BLAST match view associations BLAST with rpoC2 rpoC2 rpoC2 DNA-directed RNA polymerase subunit beta''	protein from Oryza nivara	6.0e-16