BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000829
         (1265 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225435153|ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score = 1932 bits (5006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 959/1275 (75%), Positives = 1074/1275 (84%), Gaps = 34/1275 (2%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMAS--KAVKCPRCGYINGMVKKAVAVLGIIHDRSKV 58
            MR+ KMEAL+K +LMK IV+KC+ MAS  KAVKC RCGY+NG+VKKAV+VLGIIHDRSK+
Sbjct: 133  MRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVSVLGIIHDRSKI 192

Query: 59   TE-SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLII 117
             + SL+E +SAI+HTKESKA+ +V   ILNPV VL LFKRM D DC++L L+ERPEKL++
Sbjct: 193  ADGSLEECSSAISHTKESKASFSVVD-ILNPVKVLSLFKRMMDEDCDLLNLAERPEKLVL 251

Query: 118  TNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWET 176
            TNI VPPIAIRPSV MDG +QSNEND+TERLKRIIQ NASL QEL +  S  K LAGW+ 
Sbjct: 252  TNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGSTSKCLAGWDY 311

Query: 177  LQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPD 236
            LQ+EVAQYINSDVRGVP +MQ ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPD
Sbjct: 312  LQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPD 371

Query: 237  PNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY 296
            PNLKITEVAIPI MA+IL+YPERVS HNIEKLRQCI NGP KYPGA++IRYPDG+ R L 
Sbjct: 372  PNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIRYPDGSMRSLM 431

Query: 297  GKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 356
               R + A ELK G IV+RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC
Sbjct: 432  FSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 491

Query: 357  NPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
            NPYNADFDGDEMNMHVPQTEEARTEAL+LMGVQNNLCTPKNGEILVASTQDFLTSSFLIT
Sbjct: 492  NPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 551

Query: 417  RKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
            RKDTFYDRAAFSLMC YMGDGMD VDLPTPAI+KPVELWTGKQLF+VL+RPHAN+RVY+N
Sbjct: 552  RKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKPVELWTGKQLFNVLLRPHANVRVYLN 611

Query: 477  LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
            LTV EKTY+ +  +         ETMCP+DGFVYFRNSELISGQLGKATLGNGNKDGL+S
Sbjct: 612  LTVMEKTYNKRRGK---------ETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLFS 662

Query: 537  VLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCN 596
            VLLRDY AHA + CMNRLAKLSARWIGNHGFSIGIDDVQP   L+D+K K I E YE C+
Sbjct: 663  VLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYENCH 722

Query: 597  VKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
              I++YN+GKL+L+PGC+AAQTLEA IT +LN+IRE     CM  L WRNSPLIMSQCGS
Sbjct: 723  ELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEELHWRNSPLIMSQCGS 782

Query: 657  KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
            KGSPINISQM+ACVGQQSVGGRRAP+GFIDR+LPHFPRK+K P AKGFVA+SFY+GL+AT
Sbjct: 783  KGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTAT 842

Query: 717  EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDD 776
            EFFFHTMGGREGLVDTAVKTADTGYMSRRL+KALEDLSIQYD +VRNA G IVQFLYGDD
Sbjct: 843  EFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDD 902

Query: 777  GMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAY--GKESCS 834
            GMDPA MEGK G PLNF+RL +KVKATCP      LS  Q+ E V K+L  +    E CS
Sbjct: 903  GMDPARMEGKDGFPLNFNRLFLKVKATCPAGENASLSALQIEETV-KRLKEHNTSAEGCS 961

Query: 835  EAFLNSLRKFFEGQQDKLDKKIKFV----EDIGWDDKSQILEEVTHKTSGITEKQLEVFI 890
            +AF  +L  F E  ++K     + +    E +G ++   I E+     SGIT KQL+VF+
Sbjct: 962  DAFKTNLSGFLEECKEKFKNTREALGLHGEHVG-EENLDIQEKFAKNISGITSKQLQVFL 1020

Query: 891  QTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN 950
             TC SRY++KR+EAGTAIGAIGA SIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN
Sbjct: 1021 DTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 1080

Query: 951  GAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDME 1010
            GAKRISTPIITA LECN+N   AR+VKGRIE+T LGQVAKSIKIV+TSRLA I +ALDME
Sbjct: 1081 GAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLALIAVALDME 1140

Query: 1011 TIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNV 1070
             IQ + L I+++IV+ESI++  +IKLKQQHIKVLD  KLE+ P  D+S IHFEL++LKN+
Sbjct: 1141 GIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEVHPQGDRSTIHFELHALKNL 1200

Query: 1071 LPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTK 1130
            LP V+VKGI+TVER VI          K+N  K KY LLVEGTGLQ VMG EG+ G +T 
Sbjct: 1201 LPTVVVKGIETVERAVIN---------KDN--KVKYNLLVEGTGLQTVMGTEGVIGRETT 1249

Query: 1131 SNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFG 1190
            SNHI EVQQTLGIEAAR CII+EI  TM +HGMSID RHMMLLADLMTFRGEVLGITRFG
Sbjct: 1250 SNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLGITRFG 1309

Query: 1191 IQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDA 1250
            IQKMDKSVLMLASFEKTADHLFNASV+GRDD+IEGVSECIIMGIPM LGTGILK+RQR  
Sbjct: 1310 IQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQRLQ 1369

Query: 1251 VPPMLKYGAPDPIMS 1265
              P L YG  DPI+S
Sbjct: 1370 QVPELSYGL-DPIIS 1383


>gi|255582063|ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis]
 gi|223528524|gb|EEF30548.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis]
          Length = 1383

 Score = 1914 bits (4957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 944/1285 (73%), Positives = 1074/1285 (83%), Gaps = 28/1285 (2%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMAS-KAVKCPRCGYINGMVKKAVAVLGIIHDRSKVT 59
            MRNP++E LRK++L+K IVKKCS+M S KAVKC RCG +NGMVKKA +VL IIHDR+K+ 
Sbjct: 107  MRNPRIEHLRKSELVKKIVKKCSSMTSNKAVKCTRCGDMNGMVKKAGSVLSIIHDRAKLV 166

Query: 60   ES-LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIIT 118
            +  L+E  SAI HTKES+A +++ATYIL PV VL LFKR+ + DCEVL L +RPEKLIIT
Sbjct: 167  DGYLEECRSAIAHTKESRAPISLATYILTPVKVLSLFKRIPEEDCEVLGLYDRPEKLIIT 226

Query: 119  NIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEAN-SAFKSLAGWETL 177
            NIAVPPI+IRPSV  DG QSNENDITERLK+IIQ NASL+ EL+E   S  K L  W+ L
Sbjct: 227  NIAVPPISIRPSVFTDGLQSNENDITERLKQIIQANASLRMELLEGRMSVNKYLDSWDGL 286

Query: 178  QVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDP 237
            Q  VA Y+NSDVR VP +++V +PLSGFVQRLKGKQGRFRGNLSGKRVE+TGRTVISPDP
Sbjct: 287  QAAVALYMNSDVR-VPNNVEVGKPLSGFVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDP 345

Query: 238  NLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYG 297
            NLKITEVAIPI MARIL+YPERVS HNIEKLRQ + NGP KYPGA  +RYPDG+++ L G
Sbjct: 346  NLKITEVAIPIHMARILSYPERVSHHNIEKLRQLVSNGPQKYPGASTVRYPDGSSKRLIG 405

Query: 298  KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCN 357
             +R  +A EL  GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCN
Sbjct: 406  SYRKTIAEELTFGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCN 465

Query: 358  PYNADFDGDEMNMHVPQTEEARTEALLLMGV-QNNLCTPKNGEILVASTQDFLTSSFLIT 416
            PYNADFDGDEMNMHVPQTEEARTEALLLMGV QNNLCTPKNGEILVASTQDFLTSSFLIT
Sbjct: 466  PYNADFDGDEMNMHVPQTEEARTEALLLMGVSQNNLCTPKNGEILVASTQDFLTSSFLIT 525

Query: 417  RKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
            R+DTFYDRAAFSLMC YM DGMD +DLPTPAILKP+ELWTGKQLFSVL+RP+AN+RVYVN
Sbjct: 526  RRDTFYDRAAFSLMCSYMNDGMDLIDLPTPAILKPIELWTGKQLFSVLLRPNANVRVYVN 585

Query: 477  LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
            L V+EK YS      +GD+  + ETMCPNDGFVY RNSELISGQLGKATLGNGNKDGLYS
Sbjct: 586  LIVREKIYSKP---KKGDKREK-ETMCPNDGFVYIRNSELISGQLGKATLGNGNKDGLYS 641

Query: 537  VLLRDYGAHATSGCMNRLAKLS--ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEV 594
            +LLRDY  HA + CMNRLAKL   ARWIGNHGFSIGIDDVQP K+L D KGK IS  Y+ 
Sbjct: 642  ILLRDYNPHAAATCMNRLAKLRQVARWIGNHGFSIGIDDVQPGKKLIDGKGKTISNGYQQ 701

Query: 595  CNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQC 654
            C+  I++YNEGKL LKPGCDA QTLE+ IT+ LN++RE+AG  CM  L WRNSPLIMSQC
Sbjct: 702  CDKLIEQYNEGKLLLKPGCDATQTLESEITEKLNKLREEAGDVCMKELHWRNSPLIMSQC 761

Query: 655  GSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLS 714
            GSKGS INISQMVACVGQQSVGGRRAP+GFIDRSLPHFPRK+K PAAKGFVANSFYSGL 
Sbjct: 762  GSKGSVINISQMVACVGQQSVGGRRAPDGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLM 821

Query: 715  ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYG 774
            ATEFFFHTM GREGLVDTAVKTADTGYMSRRLIK LEDLSIQYDN+VRNA GCIVQFLYG
Sbjct: 822  ATEFFFHTMAGREGLVDTAVKTADTGYMSRRLIKGLEDLSIQYDNTVRNASGCIVQFLYG 881

Query: 775  DDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKES-- 832
            DDG+DPA+MEGK G PLN DRL  KVKATCP   + YLSP  +S++VE  L  +      
Sbjct: 882  DDGLDPASMEGKGGVPLNLDRLFSKVKATCPVREEDYLSPLDISDVVENLLLKHDMALGG 941

Query: 833  -CSEAFLNSLRKFFEGQQDKLDKKIKFVEDI-----------GWDDKSQILEEVTHKTSG 880
             CSEAF  SL  F      +L+  +K  + +           G    S+I+E + HK  G
Sbjct: 942  ICSEAFKKSLTSFLGSHAKRLESMMKLADGVEDPTSENIQTGGIRGNSKIIERLAHKIFG 1001

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++E+Q+EVF++TC +RY  KRVE GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ
Sbjct: 1002 VSERQIEVFVKTCINRYLWKRVEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 1061

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRL 1000
            GVPRIKEIINGAK+ISTPIITAELE N N  AAR+ KGRI+KT+LGQVAKSIKIVMTSR 
Sbjct: 1062 GVPRIKEIINGAKKISTPIITAELEQNTNVTAARIAKGRIQKTVLGQVAKSIKIVMTSRS 1121

Query: 1001 ASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKI 1060
            AS+VI LDM+TIQ+A L ++A+IVKE+I++TP+IKLK QHIKVLD RKLE+ P  D+ ++
Sbjct: 1122 ASVVITLDMKTIQNAQLSLDANIVKEAILRTPRIKLKPQHIKVLDTRKLEVIPLGDRERV 1181

Query: 1061 HFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMG 1120
            HFEL++LKN+LP +IV+GIKTVER VIA+K+ + +    + E   Y +LVEG GL  VMG
Sbjct: 1182 HFELHNLKNLLPSIIVQGIKTVERAVIAQKKHDGK--ANDQELPTYNMLVEGMGLDLVMG 1239

Query: 1121 AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFR 1180
             EG+DGCKT SNH+ EVQ+ LGIEAAR CIIDEIN+TM+ HGMSID RHMMLL DLMTF+
Sbjct: 1240 TEGVDGCKTTSNHVMEVQKFLGIEAARKCIIDEINQTMEHHGMSIDIRHMMLLGDLMTFK 1299

Query: 1181 GEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
            GEVLGITRFGIQKMDKSVLMLASFEKTADHL++A+V GRDD+IEGVSECIIMGIPM +GT
Sbjct: 1300 GEVLGITRFGIQKMDKSVLMLASFEKTADHLYHAAVFGRDDKIEGVSECIIMGIPMQIGT 1359

Query: 1241 GILKIRQRDAVPPMLKYGAPDPIMS 1265
            GILK++QR   PP+L YG+ D I+S
Sbjct: 1360 GILKVQQRVDPPPVLNYGS-DSIIS 1383


>gi|224060165|ref|XP_002300065.1| predicted protein [Populus trichocarpa]
 gi|222847323|gb|EEE84870.1| predicted protein [Populus trichocarpa]
          Length = 1394

 Score = 1905 bits (4936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 934/1266 (73%), Positives = 1058/1266 (83%), Gaps = 25/1266 (1%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMAS-KAVKCPRCGYINGMVKKAVAVLGIIHDRSKVT 59
            MRNP+ E L+K +LMK IVKKCS+MAS KAVKC RCGY+NGMVKKA +V+GIIHDRSK+ 
Sbjct: 136  MRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMNGMVKKAGSVVGIIHDRSKLI 195

Query: 60   ES-LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIIT 118
            +  L+E  SAI HT+E++A + +ATYILNPV VL LF+RM + DCE+LYL  RPEKLIIT
Sbjct: 196  DGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRMVEEDCELLYLQGRPEKLIIT 255

Query: 119  NIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEAN-SAFKSLAGWETL 177
             IAVPPI+IRPSV  +GSQSNENDITERLK+IIQ NA L+ EL+E   +  K L GW+ L
Sbjct: 256  TIAVPPISIRPSVFTEGSQSNENDITERLKQIIQFNAKLRLELLEGRRTGIKYLIGWDEL 315

Query: 178  QVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDP 237
            Q  V  YINSDVR +P  MQV RPLSGFVQRL GKQGRFR NL+GKRVE+TGRTVISPDP
Sbjct: 316  QAVVTLYINSDVR-IPLDMQVGRPLSGFVQRLTGKQGRFRQNLAGKRVEFTGRTVISPDP 374

Query: 238  NLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYG 297
            NLKITEVAIPI MARILTYPERV+ HNIEKLRQC+ NG  KYPGARM+ YPDG++++L G
Sbjct: 375  NLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVNNGSYKYPGARMVTYPDGSSKMLTG 434

Query: 298  KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCN 357
             +R ++A ELKSGCIV RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCN
Sbjct: 435  NYRKRIAEELKSGCIVHRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCN 494

Query: 358  PYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR 417
            PYNADFDGDEMNMHVPQTEEARTEA LLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR
Sbjct: 495  PYNADFDGDEMNMHVPQTEEARTEAFLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR 554

Query: 418  KDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNL 477
            KDTFYDRAAFSLMC YM DGMD VDLPTP++LKP+ELWTGKQLFSVL+RPHAN+RVYVNL
Sbjct: 555  KDTFYDRAAFSLMCSYMNDGMDLVDLPTPSVLKPIELWTGKQLFSVLLRPHANVRVYVNL 614

Query: 478  TVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
             +KEK YS    R   + +   ETMCPNDG+VYFRNSELISGQLGKATLGNGNKDGLYS+
Sbjct: 615  ILKEKNYS----RPNKEHKKERETMCPNDGYVYFRNSELISGQLGKATLGNGNKDGLYSI 670

Query: 538  LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNV 597
            LLRDY A+A + CMNRLAKLSARWIGNHGFSIGIDDVQP K+L D+KGK IS  Y  CN 
Sbjct: 671  LLRDYNAYAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGKKLIDEKGKTISNGYRHCNK 730

Query: 598  KIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSK 657
             I +YN G+L LK GCDA QTLE  IT+ LN++RE+AG  CM  L WRNSPLIMSQCGSK
Sbjct: 731  LIADYNGGRLALKSGCDATQTLETEITERLNKLREEAGDVCMKELHWRNSPLIMSQCGSK 790

Query: 658  GSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATE 717
            GSPINISQM+ACVGQQSVGG RAP+GFIDRSLPHFPRK+K PAAKGFVANSFYSGLSATE
Sbjct: 791  GSPINISQMIACVGQQSVGGSRAPDGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLSATE 850

Query: 718  FFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDG 777
            FFFHTMGGREGLVDTAVKTADTGYM+RRL K LEDL +QYDN+V++AGG IVQFLYGDDG
Sbjct: 851  FFFHTMGGREGLVDTAVKTADTGYMARRLSKGLEDLCVQYDNTVQDAGGGIVQFLYGDDG 910

Query: 778  MDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKES---CS 834
            +DPA MEGK+G PLNFDRL MKVKATC      YLSP  +S IV+  L  +       CS
Sbjct: 911  LDPAIMEGKAGVPLNFDRLFMKVKATCGAEEDEYLSPSDISNIVQSLLLKHNGTLDGICS 970

Query: 835  EAFLNSLRKFFEGQQDKLDKKIKFVEDI------------GWDDKSQILEEVTHKTSGIT 882
            E+F  SL  F   Q  +L+  +K V+ +            G    S+  E++  K SGIT
Sbjct: 971  ESFRKSLSSFLGDQAKRLECLMKLVDGVEVENFENIKNVEGLTGISKNTEKIAQKVSGIT 1030

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
            EKQLEVF++TC  RY  KR+E GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV
Sbjct: 1031 EKQLEVFLKTCLDRYVWKRIEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 1090

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIINGAKRISTPIIT ELE N N NAAR++KGRI+KT+LGQVAKSIKIVMTSR AS
Sbjct: 1091 PRIKEIINGAKRISTPIITVELEHNSNVNAARIIKGRIQKTVLGQVAKSIKIVMTSRSAS 1150

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHF 1062
            + + LDM+TI++A L ++A+IV+E I++TPKIK K Q I VL+  KLE+FP  D++K+HF
Sbjct: 1151 VKVTLDMKTIREAQLSLDANIVRELILETPKIKRKLQRINVLEDGKLEVFPGGDRNKLHF 1210

Query: 1063 ELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAE 1122
            EL+SLKN+LP V+VKGIKTVERVVIA+K+ +  +  + G   KY + VEG GLQAVMG E
Sbjct: 1211 ELHSLKNMLPAVVVKGIKTVERVVIAQKKLDDAENDQGGP--KYNMFVEGMGLQAVMGTE 1268

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
            G+DG KTKSNHI EVQ+TLGIEAAR CIIDEI  TM++HGMSID RHMMLLAD+MT RG 
Sbjct: 1269 GVDGRKTKSNHIIEVQETLGIEAARKCIIDEIKGTMESHGMSIDIRHMMLLADVMTSRGV 1328

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            VLGITRFGIQKMDKSVLMLASFEKT+DHLFNASV G+DD+IEGVSECIIMGIP+ +GTG+
Sbjct: 1329 VLGITRFGIQKMDKSVLMLASFEKTSDHLFNASVKGKDDKIEGVSECIIMGIPVAIGTGV 1388

Query: 1243 LKIRQR 1248
            LKI+QR
Sbjct: 1389 LKIQQR 1394


>gi|449462093|ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score = 1897 bits (4915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 933/1281 (72%), Positives = 1058/1281 (82%), Gaps = 42/1281 (3%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMAS--KAVKCPRCGYINGMVKKAVAVLGIIHDRSKV 58
            MRNPK+EALRK DL+K I+KKCST+ +  K+ +C RCGY+NG VKKAV++LGI+H R++ 
Sbjct: 137  MRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGSVKKAVSMLGILHYRARS 196

Query: 59   TESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIIT 118
             +       A   +++ +A  NV+  ILNP  VL LF+RM+D DCE+L+LS RPEKLIIT
Sbjct: 197  KD-------AGVVSEDLRAPYNVSNDILNPFRVLCLFQRMSDEDCELLFLSNRPEKLIIT 249

Query: 119  NIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQ 178
            N+ VPPIAIRPSVIMDGSQSNENDITERLKRIIQ NAS+ QEL  +NS  K L  W+ LQ
Sbjct: 250  NVLVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQAKCLESWDMLQ 309

Query: 179  VEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPN 238
             EVAQ INSDVRG+PFSMQV++PL+GFVQRLKGKQGRFRGNL GKRVE+TGRTVISPDPN
Sbjct: 310  SEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTGRTVISPDPN 369

Query: 239  LKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGK 298
            LKITEVA+PI MARILTYPERV+ HNIEKLRQC+ NGPDKYPGARM+R+ DG+ R L   
Sbjct: 370  LKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYPGARMLRHLDGSMRSLMIS 429

Query: 299  FRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNP 358
             R +LA ELK G IV+RHLEDGDVVLFNRQPSLHRMSIMCHR R+MPWRTLRFNESVCNP
Sbjct: 430  GRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTLRFNESVCNP 489

Query: 359  YNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK 418
            YNADFDGDEMNMHVPQTEEARTEA+LLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK
Sbjct: 490  YNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK 549

Query: 419  DTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLT 478
            DTFYDRAAFSLMC YMGDGMD VDLPTPA++KP+ELWTGKQLFSVL+RPHA+M+VY+NLT
Sbjct: 550  DTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQLFSVLVRPHASMKVYLNLT 609

Query: 479  VKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL 538
            VKEK+YS    + +G+E+ R ETMCPNDGFVYFRNSELISGQ+GKATLGNGNKDGLYSVL
Sbjct: 610  VKEKSYS----KVKGNEKER-ETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSVL 664

Query: 539  LRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVK 598
            LRDY AHA + CMNRLAKLSARWIGNHGFSIGIDDVQP  +L  KK   I E Y  C+ +
Sbjct: 665  LRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKKKQTTILEGYRDCDKQ 724

Query: 599  IKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKG 658
            I  +N G L  + GCDAAQ+LE+ IT ILN IRE     CM +L WRNSPLIMSQCGSKG
Sbjct: 725  INLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVCMQNLHWRNSPLIMSQCGSKG 784

Query: 659  SPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEF 718
            SPINISQMVACVGQQSVGGRRAP+GFIDRSLPHF RKAK PAAKGFVANSFYSGL+ATEF
Sbjct: 785  SPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAAKGFVANSFYSGLTATEF 844

Query: 719  FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
            FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI YD+SVRNAGGCIVQF YGDDGM
Sbjct: 845  FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGCIVQFCYGDDGM 904

Query: 779  DPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLA---AYGKESCSE 835
            DPA MEGKSG PLNF+RL +K KATCP  G + LSP + SE VE +L+   A  +  CS 
Sbjct: 905  DPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVEDRLSKDDASPECGCSP 964

Query: 836  AFLNSLR----KFFEGQ-----------QDKLDKKIKFVEDIGWDDKSQILEEVTHKTSG 880
            AF+ SL+    K+ E Q           +  +DK I    D   +D   I  +V    +G
Sbjct: 965  AFVGSLKIFLNKYVEAQKKSWGTLLADNESAVDKSIISSSD---NDNIVIRNKVVQNIAG 1021

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T +QL+VF+ TC SRY  K++EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN+T 
Sbjct: 1022 VTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1081

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRL 1000
            GVPRIKEIINGAKRISTPI+TA L  +DN N AR+VK RIEKT LGQ+AK I+IVM+SR 
Sbjct: 1082 GVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIAKCIQIVMSSRS 1141

Query: 1001 ASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP-VDKSK 1059
            A I I LDME I+DA L ++A++VK++I+ TPK+KLK +HI VLD RKL + P   D++K
Sbjct: 1142 ALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVLPQDADRNK 1201

Query: 1060 IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVM 1119
            +HF L+ LKN+LP V+VKGIKTV R VI E++ + R        KK+ LLVEGTGLQAVM
Sbjct: 1202 LHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNA------KKFSLLVEGTGLQAVM 1255

Query: 1120 GAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTF 1179
            G EG+DGC TKSNHI EVQQ LGIEAAR CII+EI  TM++HGMSID RHMMLL DLMTF
Sbjct: 1256 GTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTF 1315

Query: 1180 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLG 1239
            RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD+IEGVSEC+IMGIPMPLG
Sbjct: 1316 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLG 1375

Query: 1240 TGILKIRQRDAVPPMLKYGAP 1260
            TG+LK+RQR +VP  L YG P
Sbjct: 1376 TGMLKVRQRVSVPQQLPYGPP 1396


>gi|356541271|ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
            max]
          Length = 1391

 Score = 1766 bits (4573), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 881/1273 (69%), Positives = 1019/1273 (80%), Gaps = 26/1273 (2%)

Query: 1    MRNPKMEALRKTDLMK-SIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVT 59
            MR+ K   L K D +K  ++K CS    K V CPRCGYING VKK  A L IIHD SK  
Sbjct: 137  MRSSKKSELDKIDFVKVRVIKDCS----KVVNCPRCGYINGSVKKLPASLTIIHDCSKCR 192

Query: 60   ESL-QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIIT 118
              + +E  SA++  K+S+A  NV+  ILNP  VL LFKRM D DCE+LY++ERPEKLI+T
Sbjct: 193  NYIVEELDSALSRMKDSRATTNVSNRILNPFQVLSLFKRMLDEDCELLYVAERPEKLIMT 252

Query: 119  NIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQ 178
            N+ VPPIAIRPSV+MD S SNENDITERLK IIQ NA L+QEL E+  + K L GW+ LQ
Sbjct: 253  NVVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQESTFSSKFLDGWDILQ 312

Query: 179  VEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPN 238
             EVAQ+INSDVRG+PF MQ  + L+GFVQRLKGK GRFRGNLSGKRVEYTGRTVISPDPN
Sbjct: 313  NEVAQFINSDVRGIPFYMQPTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRTVISPDPN 372

Query: 239  LKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGK 298
            LKI+EVAIPI MARILTYPERV+ HNIEKLRQC++NGPDKYPGARM+R   G +  L   
Sbjct: 373  LKISEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLRRDGGHSWSLKVL 432

Query: 299  FRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNP 358
             R + A EL+ G IVDRHLEDGD+VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNP
Sbjct: 433  CRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNP 492

Query: 359  YNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK 418
            YNADFDGDEMN+HVPQTEEARTEA+LLMGV+NNLCTPKNGEILVASTQDFLTSSFLITRK
Sbjct: 493  YNADFDGDEMNLHVPQTEEARTEAILLMGVENNLCTPKNGEILVASTQDFLTSSFLITRK 552

Query: 419  DTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLT 478
            DTFYDR+ FSL+C Y+GDGMD +DLPTPAI+KPVELW+GKQLFS+++RPHANMRVYVNLT
Sbjct: 553  DTFYDRSTFSLICSYIGDGMDPIDLPTPAIVKPVELWSGKQLFSIILRPHANMRVYVNLT 612

Query: 479  VKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL 538
            VKE+ Y+      +   E +  T+CPNDGFVYFRNSELISGQ+GK TLGNGNKDGL+SVL
Sbjct: 613  VKERNYTEDKKIKDKKIEWK--TLCPNDGFVYFRNSELISGQVGKVTLGNGNKDGLFSVL 670

Query: 539  LRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVK 598
            LRDY AHA + CMNRLAKLSARWIGNHGFSIGIDDVQPK+ L +KK + ISE Y  C+  
Sbjct: 671  LRDYRAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILINKKDETISEGYRECDKH 730

Query: 599  IKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKG 658
            I+ +N+GKL+L  GCDAAQTLE  IT +LN +R+ AGK CM +L WRNSPLIMSQCGSKG
Sbjct: 731  IEAFNKGKLELLAGCDAAQTLETRITGVLNGLRDTAGKVCMQTLHWRNSPLIMSQCGSKG 790

Query: 659  SPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEF 718
            S INISQMVACVGQQSVGGRR PNGFIDRSLPHFPRK+K PAAKGFVANSFYSGLSATEF
Sbjct: 791  SSINISQMVACVGQQSVGGRRTPNGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLSATEF 850

Query: 719  FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
            FFHTMGGREGLVDTAVKTADTGYMSR+L+K+LEDL + YD +VRNAGG IVQF YGDDGM
Sbjct: 851  FFHTMGGREGLVDTAVKTADTGYMSRQLMKSLEDLFLHYDYTVRNAGGSIVQFCYGDDGM 910

Query: 779  DPANMEGKSGEPLNFDRLLMKVKATCP-PAGQRYLSPQQVSEIVEKQLAAYGKESCSEAF 837
            DPA MEGK+G+PLNF+RL +K KA CP       LS   VS++V ++L+ +     +E  
Sbjct: 911  DPAGMEGKNGKPLNFERLFLKSKAICPNDEDDEILSSSDVSKVVHEKLSEFDMSRLAEKG 970

Query: 838  LNSL---RKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCF 894
            +  +     F E  Q  +    K  E+   D+ SQ L++   + SGIT KQL+VF+  C 
Sbjct: 971  VFEVGFSADFVESLQSFIKDNAKLTEEGFTDEHSQNLKKFGQRISGITRKQLDVFLNICL 1030

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SRY  K++EAG  +GA GA SIGEPGTQMTLKTFHFAGVASMN+T GVPR+KEI+NG K+
Sbjct: 1031 SRYHSKKMEAGAPVGATGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRVKEIMNGNKK 1090

Query: 955  ISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQD 1014
            ISTPIITA LE +DN N AR+VKGRIEKT LGQVAKSIK+VMTSR AS+VI LDM+ IQD
Sbjct: 1091 ISTPIITAILERDDNANTARIVKGRIEKTNLGQVAKSIKVVMTSRSASVVITLDMKRIQD 1150

Query: 1015 AHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP-PVDKSKIHFELYSLKNVLPM 1073
            AHL I+A+IVKESI++T K KLK +HIK+LD +KLE+ P  VD+SKIHF+L+ LKN+LP 
Sbjct: 1151 AHLNIDANIVKESILRTKKTKLKPEHIKILDIKKLEVVPQDVDRSKIHFQLHYLKNLLPT 1210

Query: 1074 VIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNH 1133
            V+VKGIKTV+RVVI++  K           +K+RLLVEGTG + VMG EGIDG KT SNH
Sbjct: 1211 VVVKGIKTVDRVVISKDTK----------AEKFRLLVEGTGFREVMGVEGIDGRKTVSNH 1260

Query: 1134 IFEVQQTLGIEAARICIIDEINETM-KAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQ 1192
            I EV+ TLGIEAAR  I+ EI  TM   HGM+ID RHMMLLAD+MT  G +LGI RFGI 
Sbjct: 1261 IHEVRDTLGIEAARESIVKEIKYTMVDTHGMNIDIRHMMLLADMMTATGHILGINRFGIS 1320

Query: 1193 KMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAVP 1252
            KM KSVLMLASFE+TAD LF ASV GRDD I GVSE IIMGIP+ +GTG++K++QR   P
Sbjct: 1321 KMGKSVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPIQIGTGMIKVKQR-LDP 1379

Query: 1253 PMLKYGAPDPIMS 1265
            P L +G   PI+S
Sbjct: 1380 PELPHGT-SPILS 1391


>gi|297793561|ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297310500|gb|EFH40924.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1376

 Score = 1745 bits (4520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 869/1271 (68%), Positives = 1022/1271 (80%), Gaps = 35/1271 (2%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMAS-KAVKCPRCGYINGMVKKAVAVLGI--IHDRSK 57
            MRNPKME L+KT+L K++VKKCSTMAS + + C +CGY+NGMVKK  A +GI   HDRSK
Sbjct: 135  MRNPKMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQMGIGISHDRSK 194

Query: 58   VTES-LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLI 116
            +    + E  SAI+HTKES  A+N  TY+L+P  VL LFK M+D DCE+LY++ RPE LI
Sbjct: 195  IHGGEVDECKSAISHTKESTRAINPLTYVLDPNLVLGLFKGMSDKDCELLYIAHRPENLI 254

Query: 117  ITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWET 176
             T + VPP++IRPSV++ G++SNENDITERLK IIQ NA L + L +  ++ K++  W+T
Sbjct: 255  TTCMLVPPLSIRPSVMIGGTRSNENDITERLKLIIQNNACLHRILSQPTTSPKNMQVWDT 314

Query: 177  LQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPD 236
            +Q EVA+YINS+VRGV    +   PLSG +QRLKGKQGRFR NLSGKRVEYTGRTVISPD
Sbjct: 315  VQSEVAKYINSEVRGVQNQPE-KTPLSGLLQRLKGKQGRFRANLSGKRVEYTGRTVISPD 373

Query: 237  PNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY 296
            PNLKITEV IPI MARILT+PE VS HNIEKLRQC++NGP+KYPGAR +RYPDG++R L 
Sbjct: 374  PNLKITEVGIPILMARILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDGSSRTLV 433

Query: 297  GKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 356
            G +R ++A EL  GCIVDRHLE+GD VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC
Sbjct: 434  GDYRKRIADELTIGCIVDRHLEEGDAVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 493

Query: 357  NPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
            NPYNADFDGDEMNMHVPQTEEARTEA+ LMGVQNNLCTPKNGEILVASTQDFLT+SFLIT
Sbjct: 494  NPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDFLTTSFLIT 553

Query: 417  RKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
            RKDTFYDRAAFSL+C YMGDGMD +DLPTP ILKP+ELWTGKQLFSVL+RP+A++RVYV 
Sbjct: 554  RKDTFYDRAAFSLICSYMGDGMDAIDLPTPTILKPIELWTGKQLFSVLLRPNASVRVYVT 613

Query: 477  LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
            L VKEK +       +G+     ETMC NDG+VYFRNSELISGQLGKATLGNGNKDGLYS
Sbjct: 614  LNVKEKNFK------KGEHGFD-ETMCVNDGWVYFRNSELISGQLGKATLGNGNKDGLYS 666

Query: 537  VLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCN 596
            +LLRDY +HA + CMNRLAKLSARWIG HGFSIGIDDVQP +EL+ ++   I   Y+ C+
Sbjct: 667  ILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELNKERKDSIQFGYDQCH 726

Query: 597  VKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
             KI+E+N G LQLK G D A++LEA IT ILN IRE  GKACM  L WRNSPLIMSQCGS
Sbjct: 727  RKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQCGS 786

Query: 657  KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
            KGSPINISQMVACVGQQ+V G RAP+GFIDRSLPHFPR +K PAAKGFVANSFYSGL+AT
Sbjct: 787  KGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTAT 846

Query: 717  EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDD 776
            EFFFHTMGGREGLVDTAVKTA TGYMSRRL+KALEDL + YDN+VRNA GCI+QF YGDD
Sbjct: 847  EFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDD 906

Query: 777  GMDPANMEGKSGEPLNFDRLLMKVKATCPP-AGQRYLSPQQVSEIVEKQLAAYGKES-CS 834
            GMDPA MEGK G PLNFDRL +K++ATCPP +   YLS +++S+  E++L  + K   C+
Sbjct: 907  GMDPALMEGKDGAPLNFDRLFLKIQATCPPRSHHNYLSSEELSQKFEEELVRHDKSRVCT 966

Query: 835  EAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCF 894
            +AF+ SLR              +FV  +G   KS    +V +K SG+T+KQLEVF++ C 
Sbjct: 967  DAFVKSLR--------------EFVSLLGV--KSASTPQVLYKASGVTDKQLEVFVKICV 1010

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SRYR K++EAGTAIG IGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRI EIIN +K 
Sbjct: 1011 SRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIINASKN 1070

Query: 955  ISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQD 1014
            ISTP+I+AELE      +AR VKGRIEKT LGQVA+SI+++MTS  AS+ I LD + I++
Sbjct: 1071 ISTPVISAELENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILDNKIIEE 1130

Query: 1015 AHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMV 1074
            A L I+   VK SI++TP+IKL    I+VLD   L+I P VDKS+ HF L++LKNVLP +
Sbjct: 1131 ACLSISPWSVKNSILKTPRIKLNDNDIRVLD-TGLDITPVVDKSRTHFNLHNLKNVLPNI 1189

Query: 1075 IVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHI 1134
            IV GIKTVERVV+AE   + +++     K +++L VEGT L AVMG  GI+G  T SN++
Sbjct: 1190 IVNGIKTVERVVVAEDMDKNKQID---GKTRWKLFVEGTNLLAVMGTPGINGRTTTSNNV 1246

Query: 1135 FEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKM 1194
             EV +TLGIEAAR  IIDEI   M  HGMSID RHMMLLAD+MT+RGEVLGI R GIQKM
Sbjct: 1247 VEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKM 1306

Query: 1195 DKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAVPPM 1254
            DKSVLM ASFE+T DHLF+A+++G+ D IEGV+EC+IMGIPM LGTGILK+ QR    P 
Sbjct: 1307 DKSVLMQASFERTGDHLFSAAISGKVDNIEGVTECVIMGIPMKLGTGILKVLQRTDDLPK 1366

Query: 1255 LKYGAPDPIMS 1265
            LKYGA DPI+S
Sbjct: 1367 LKYGA-DPIIS 1376


>gi|145359470|ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
 gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
          Length = 1376

 Score = 1738 bits (4502), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 869/1271 (68%), Positives = 1021/1271 (80%), Gaps = 35/1271 (2%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMAS-KAVKCPRCGYINGMVKKAVAV--LGIIHDRSK 57
            MRNP+ME L+KT+L K++VKKCSTMAS + + C +CGY+NGMVKK  A   +GI HDRSK
Sbjct: 135  MRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFGIGISHDRSK 194

Query: 58   VTES-LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLI 116
            +    + E  SAI+HTK+S AA+N  TY+L+P  VL LFKRM+D DCE+LY++ RPE LI
Sbjct: 195  IHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCELLYIAYRPENLI 254

Query: 117  ITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWET 176
            IT + VPP++IRPSV++ G QSNEND+T RLK+II  NASL + L +  S+ K++  W+T
Sbjct: 255  ITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNMQVWDT 314

Query: 177  LQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPD 236
            +Q+EVA+YINS+VRG     +   PLSG +QRLKGK GRFR NLSGKRVE+TGRTVISPD
Sbjct: 315  VQIEVARYINSEVRGCQNQPE-EHPLSGILQRLKGKGGRFRANLSGKRVEFTGRTVISPD 373

Query: 237  PNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY 296
            PNLKITEV IPI MA+ILT+PE VS HNIEKLRQC++NGP+KYPGAR +RYPDG++R L 
Sbjct: 374  PNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDGSSRTLV 433

Query: 297  GKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 356
            G +R ++A EL  GCIVDRHL++GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC
Sbjct: 434  GDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 493

Query: 357  NPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
            NPYNADFDGDEMNMHVPQTEEARTEA+ LMGVQNNLCTPKNGEILVASTQDFLTSSFLIT
Sbjct: 494  NPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 553

Query: 417  RKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
            RKDTFYDRAAFSL+C YMGDGMD +DLPTP ILKP+ELWTGKQ+FSVL+RP+A++RVYV 
Sbjct: 554  RKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFSVLLRPNASIRVYVT 613

Query: 477  LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
            L VKEK +       +G+     ETMC NDG+VYFRNSELISGQLGKATLGNGNKDGLYS
Sbjct: 614  LNVKEKNFK------KGEHGFD-ETMCINDGWVYFRNSELISGQLGKATLGNGNKDGLYS 666

Query: 537  VLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCN 596
            +LLRDY +HA + CMNRLAKLSARWIG HGFSIGIDDVQP +ELS ++   I   Y+ C+
Sbjct: 667  ILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQCH 726

Query: 597  VKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
             KI+E+N G LQLK G D A++LEA IT ILN IRE  GKACM  L WRNSPLIMSQCGS
Sbjct: 727  RKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQCGS 786

Query: 657  KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
            KGSPINISQMVACVGQQ+V G RAP+GFIDRSLPHFPR +K PAAKGFVANSFYSGL+AT
Sbjct: 787  KGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTAT 846

Query: 717  EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDD 776
            EFFFHTMGGREGLVDTAVKTA TGYMSRRL+KALEDL + YDN+VRNA GCI+QF YGDD
Sbjct: 847  EFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDD 906

Query: 777  GMDPANMEGKSGEPLNFDRLLMKVKATCPP-AGQRYLSPQQVSEIVEKQLAAYGKES-CS 834
            GMDPA MEGK G PLNF+RL +KV+ATCPP +   YLS +++S+  E++L  + K   C+
Sbjct: 907  GMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEEELVRHDKSRVCT 966

Query: 835  EAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCF 894
            +AF+ SLR              +FV  +G   KS    +V +K SG+T+KQLEVF++ C 
Sbjct: 967  DAFVKSLR--------------EFVSLLGV--KSASPPQVLYKASGVTDKQLEVFVKICV 1010

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
             RYR K++EAGTAIG IGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRI EIIN +K 
Sbjct: 1011 FRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIINASKN 1070

Query: 955  ISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQD 1014
            ISTP+I+AELE      +AR VKGRIEKT LGQVA+SI+++MTS  AS+ I LD + I++
Sbjct: 1071 ISTPVISAELENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILDNKIIEE 1130

Query: 1015 AHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMV 1074
            A L I    VK SI++TP+IKL    I+VLD   L+I P VDKS+ HF L++LKNVLP +
Sbjct: 1131 ACLSITPWSVKNSILKTPRIKLNDNDIRVLD-TGLDITPVVDKSRAHFNLHNLKNVLPNI 1189

Query: 1075 IVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHI 1134
            IV GIKTVERVV+AE   +  K K+   K K++L VEGT L AVMG  GI+G  T SN++
Sbjct: 1190 IVNGIKTVERVVVAE---DMDKSKQIDGKTKWKLFVEGTNLLAVMGTPGINGRTTTSNNV 1246

Query: 1135 FEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKM 1194
             EV +TLGIEAAR  IIDEI   M  HGMSID RHMMLLAD+MT+RGEVLGI R GIQKM
Sbjct: 1247 VEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKM 1306

Query: 1195 DKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAVPPM 1254
            DKSVLM ASFE+T DHLF+A+ +G+ D IEGV+EC+IMGIPM LGTGILK+ QR    P 
Sbjct: 1307 DKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTGILKVLQRTDDLPK 1366

Query: 1255 LKYGAPDPIMS 1265
            LKYG PDPI+S
Sbjct: 1367 LKYG-PDPIIS 1376


>gi|8777343|dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
          Length = 1383

 Score = 1720 bits (4454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 864/1278 (67%), Positives = 1017/1278 (79%), Gaps = 42/1278 (3%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMAS-KAVKCPRCGYINGMVKKAVAV--LGIIHDRSK 57
            MRNP+ME L+KT+L K++VKKCSTMAS + + C +CGY+NGMVKK  A   +GI HDRSK
Sbjct: 135  MRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFGIGISHDRSK 194

Query: 58   VTES-LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLI 116
            +    + E  SAI+HTK+S AA+N  TY+L+P  VL LFKRM+D DCE+LY++ RPE LI
Sbjct: 195  IHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCELLYIAYRPENLI 254

Query: 117  ITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWET 176
            IT + VPP++IRPSV++ G QSNEND+T RLK+II  NASL + L +  S+ K++  W+T
Sbjct: 255  ITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNMQVWDT 314

Query: 177  LQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPD 236
            +Q+EVA+YINS+VRG     +   PLSG +QRLKGK GRFR NLSGKRVE+TGRTVISPD
Sbjct: 315  VQIEVARYINSEVRGCQNQPE-EHPLSGILQRLKGKGGRFRANLSGKRVEFTGRTVISPD 373

Query: 237  PNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY 296
            PNLKITEV IPI MA+ILT+PE VS HNIEKLRQC++NGP+KYPGAR +RYPDG++R L 
Sbjct: 374  PNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDGSSRTLV 433

Query: 297  GKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 356
            G +R ++A EL  GCIVDRHL++GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC
Sbjct: 434  GDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 493

Query: 357  NPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
            NPYNADFDGDEMNMHVPQTEEARTEA+ LMGVQNNLCTPKNGEILVASTQDFLTSSFLIT
Sbjct: 494  NPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 553

Query: 417  RKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
            RKDTFYDRAAFSL+C YMGDGMD +DLPTP ILKP+ELWTGKQ+FSVL+RP+A++RVYV 
Sbjct: 554  RKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFSVLLRPNASIRVYVT 613

Query: 477  LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
            L VKEK +       +G+     ETMC NDG+VYFRNSELISGQLGKATLGNGNKDGLYS
Sbjct: 614  LNVKEKNFK------KGEHGFD-ETMCINDGWVYFRNSELISGQLGKATLGNGNKDGLYS 666

Query: 537  VLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCN 596
            +LLRDY +HA + CMNRLAKLSARWIG HGFSIGIDDVQP +ELS ++   I   Y+ C+
Sbjct: 667  ILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQCH 726

Query: 597  VKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
             KI+E+N G LQLK G D A++LEA IT ILN IRE  GKACM  L WRNSPLIMSQCGS
Sbjct: 727  RKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQCGS 786

Query: 657  KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
            KGSPINISQMVACVGQQ+V G RAP+GFIDRSLPHFPR +K PAAKGFVANSFYSGL+AT
Sbjct: 787  KGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTAT 846

Query: 717  EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDD 776
            EFFFHTMGGREGLVDTAVKTA TGYMSRRL+KALEDL + YDN+VRNA GCI+QF YGDD
Sbjct: 847  EFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDD 906

Query: 777  GMDPANMEGKSGEPLNFDRLLMKVKATCPP-AGQRYLSPQQVSEIVEKQLAAYGKES-CS 834
            GMDPA MEGK G PLNF+RL +KV+ATCPP +   YLS +++S+  E++L  + K   C+
Sbjct: 907  GMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEEELVRHDKSRVCT 966

Query: 835  EAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSG-------ITEKQLE 887
            +AF+ SLR              +FV  +G   KS    +V +K SG       +    ++
Sbjct: 967  DAFVKSLR--------------EFVSLLGV--KSASPPQVLYKASGQKYEILPLIYINMQ 1010

Query: 888  VFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKE 947
            VF++ C  RYR K++EAGTAIG IGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRI E
Sbjct: 1011 VFVKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINE 1070

Query: 948  IINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIAL 1007
            IIN +K ISTP+I+AELE      +AR VKGRIEKT LGQVA+SI+++MTS  AS+ I L
Sbjct: 1071 IINASKNISTPVISAELENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIIL 1130

Query: 1008 DMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSL 1067
            D + I++A L I    VK SI++TP+IKL    I+VLD   L+I P VDKS+ HF L++L
Sbjct: 1131 DNKIIEEACLSITPWSVKNSILKTPRIKLNDNDIRVLD-TGLDITPVVDKSRAHFNLHNL 1189

Query: 1068 KNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGC 1127
            KNVLP +IV GIKTVERVV+AE   +  K K+   K K++L VEGT L AVMG  GI+G 
Sbjct: 1190 KNVLPNIIVNGIKTVERVVVAE---DMDKSKQIDGKTKWKLFVEGTNLLAVMGTPGINGR 1246

Query: 1128 KTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGIT 1187
             T SN++ EV +TLGIEAAR  IIDEI   M  HGMSID RHMMLLAD+MT+RGEVLGI 
Sbjct: 1247 TTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQ 1306

Query: 1188 RFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQ 1247
            R GIQKMDKSVLM ASFE+T DHLF+A+ +G+ D IEGV+EC+IMGIPM LGTGILK+ Q
Sbjct: 1307 RTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTGILKVLQ 1366

Query: 1248 RDAVPPMLKYGAPDPIMS 1265
            R    P LKYG PDPI+S
Sbjct: 1367 RTDDLPKLKYG-PDPIIS 1383


>gi|334188504|ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
 gi|332009887|gb|AED97270.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
          Length = 1391

 Score = 1709 bits (4427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 863/1283 (67%), Positives = 1016/1283 (79%), Gaps = 54/1283 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMAS-KAVKCPRCGYINGMVKKAVAV--LGIIHDRSK 57
            MRNP+ME L+KT+L K++VKKCSTMAS + + C +CGY+NGMVKK  A   +GI HDRSK
Sbjct: 145  MRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFGIGISHDRSK 204

Query: 58   VTES-LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLI 116
            +    + E  SAI+HTK+S AA+N  TY+L+P  VL LFKRM+D DCE+LY++ RPE LI
Sbjct: 205  IHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCELLYIAYRPENLI 264

Query: 117  ITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWET 176
            IT + VPP++IRPSV++ G QSNEND+T RLK+II  NASL + L +  S+ K++  W+T
Sbjct: 265  ITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNMQVWDT 324

Query: 177  LQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPD 236
            +Q+EVA+YINS+VRG     +   PLSG +QRLKGK GRFR NLSGKRVE+TGRTVISPD
Sbjct: 325  VQIEVARYINSEVRGCQNQPE-EHPLSGILQRLKGKGGRFRANLSGKRVEFTGRTVISPD 383

Query: 237  PNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY 296
            PNLKITEV IPI MA+ILT+PE VS HNIEKLRQC++NGP+KYPGAR +RYPDG++R L 
Sbjct: 384  PNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDGSSRTLV 443

Query: 297  GKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 356
            G +R ++A EL  GCIVDRHL++GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC
Sbjct: 444  GDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 503

Query: 357  NPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
            NPYNADFDGDEMNMHVPQTEEARTEA+ LMGVQNNLCTPKNGEILVASTQDFLTSSFLIT
Sbjct: 504  NPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 563

Query: 417  RKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
            RKDTFYDRAAFSL+C YMGDGMD +DLPTP ILKP+ELWTGKQ+FSVL+RP+A++RVYV 
Sbjct: 564  RKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFSVLLRPNASIRVYVT 623

Query: 477  LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKAT-------LGNG 529
            L VKEK +       +G+     ETMC NDG+VYFRNSELISGQLGKAT       LGNG
Sbjct: 624  LNVKEKNFK------KGEHGFD-ETMCINDGWVYFRNSELISGQLGKATLALDIFPLGNG 676

Query: 530  NKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLIS 589
            NKDGLYS+LLRDY +HA + CMNRLAKLSARWIG HGFSIGIDDVQP +ELS ++   I 
Sbjct: 677  NKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQ 736

Query: 590  ENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPL 649
              Y+ C+ KI+E+N G LQLK G D A++LEA IT ILN IRE  GKACM  L WRNSPL
Sbjct: 737  FGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPL 796

Query: 650  IMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSF 709
            IMSQCGSKGSPINISQMVACVGQQ+V G RAP+GFIDRSLPHFPR +K PAAKGFVANSF
Sbjct: 797  IMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSF 856

Query: 710  YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIV 769
            YSGL+ATEFFFHTMGGREGLVDTAVKTA TGYMSRRL+KALEDL + YDN+VRNA GCI+
Sbjct: 857  YSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCIL 916

Query: 770  QFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPP-AGQRYLSPQQVSEIVEKQLAAY 828
            QF YGDDGMDPA MEGK G PLNF+RL +KV+ATCPP +   YLS +++S+  E++L  +
Sbjct: 917  QFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEEELVRH 976

Query: 829  GKES-CSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLE 887
             K   C++AF+ SLR              +FV  +G   KS    +V +K SG+T+KQLE
Sbjct: 977  DKSRVCTDAFVKSLR--------------EFVSLLGV--KSASPPQVLYKASGVTDKQLE 1020

Query: 888  VFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKE 947
            VF++ C  RYR K++EAGTAIG IGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRI E
Sbjct: 1021 VFVKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINE 1080

Query: 948  IINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIAL 1007
            IIN +K ISTP+I+AELE      +AR VKGRIEKT LGQVA+SI+++MTS  AS+ I L
Sbjct: 1081 IINASKNISTPVISAELENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIIL 1140

Query: 1008 DMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSL 1067
            D + I++A L I    VK SI++TP+IKL    I+VLD   L+I P VDKS+ HF L++L
Sbjct: 1141 DNKIIEEACLSITPWSVKNSILKTPRIKLNDNDIRVLD-TGLDITPVVDKSRAHFNLHNL 1199

Query: 1068 KNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLV-----EGTGLQAVMGAE 1122
            KNVLP +IV GIKTVERVV+A          E+ +K   +L++       T L AVMG  
Sbjct: 1200 KNVLPNIIVNGIKTVERVVVA----------EDMDKMLAKLIIPCPRWACTNLLAVMGTP 1249

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
            GI+G  T SN++ EV +TLGIEAAR  IIDEI   M  HGMSID RHMMLLAD+MT+RGE
Sbjct: 1250 GINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGE 1309

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            VLGI R GIQKMDKSVLM ASFE+T DHLF+A+ +G+ D IEGV+EC+IMGIPM LGTGI
Sbjct: 1310 VLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTGI 1369

Query: 1243 LKIRQRDAVPPMLKYGAPDPIMS 1265
            LK+ QR    P LKYG PDPI+S
Sbjct: 1370 LKVLQRTDDLPKLKYG-PDPIIS 1391


>gi|115459150|ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
 gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa Japonica Group]
 gi|38347455|emb|CAD41360.2| OSJNBa0076N16.24 [Oryza sativa Japonica Group]
 gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa Japonica Group]
 gi|116310339|emb|CAH67354.1| OSIGBa0130B08.14 [Oryza sativa Indica Group]
 gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa Indica Group]
 gi|215768005|dbj|BAH00234.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195112|gb|EEC77539.1| hypothetical protein OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score = 1660 bits (4300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 827/1274 (64%), Positives = 989/1274 (77%), Gaps = 35/1274 (2%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            MRNPK + L+K+ +MK +  KC     K  +CP CG+ING+ KK  A L I+HD SK  +
Sbjct: 136  MRNPKADPLQKSAIMKKVRDKC-----KLSRCPWCGFINGVAKKGRAGLIILHDCSKTLD 190

Query: 61   -SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITN 119
             S +E   A++H KE K +++ A  +L+P  VL LFKRMTD DCE+L L +RPEKLI+T 
Sbjct: 191  GSTEELRDALSHKKE-KLSIS-AVRMLDPAIVLSLFKRMTDEDCELLNLGDRPEKLIVTE 248

Query: 120  IAVPPIAIRPSVIMDGSQ-SNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQ 178
            IAVPP+ IRPSV + G + SNE+ IT  LK I  TN+ L++ L       K    W+ LQ
Sbjct: 249  IAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMKCFDCWQHLQ 308

Query: 179  VEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPN 238
            ++V +YINSD   +P S        G VQRLKGK GRFRGNLSGKR EYTGRTVISPDPN
Sbjct: 309  LQVVEYINSDAPSLPESQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTGRTVISPDPN 363

Query: 239  LKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGK 298
            L+ITEVAIPI MAR+LTYPERVS +NIEKLRQCI+NGP K+PGA  I  PDGT   L   
Sbjct: 364  LRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQPDGTKLHLKYC 423

Query: 299  FRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNP 358
             R   A +LK GC+V+RHLEDGD+VLFNRQPSLHRMSIM HRARIMPWRTLRFNESVCNP
Sbjct: 424  DRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNP 483

Query: 359  YNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK 418
            YNADFDGDEMN+HVPQTEEARTEAL+LMGVQNNLCTPKNGEILVASTQDFLTSSFL+TRK
Sbjct: 484  YNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLVTRK 543

Query: 419  DTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLT 478
            D FYDR++FSL+C Y+GD M+ +DLPTPA++KP+ELWTGKQLFSVL+RP+A  +V++NLT
Sbjct: 544  DNFYDRSSFSLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNACTKVFLNLT 603

Query: 479  VKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL 538
            VKEK Y     +T     +  E MCPNDGFVYFRNSEL+SGQ+GKATLGNGNKDG++S L
Sbjct: 604  VKEKIY-----KTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLGNGNKDGMFSTL 658

Query: 539  LRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVK 598
            +RDY +HA + CMNRLAK SAR+IGNHGFSIG+DDVQP + L+ +K   I   Y+ C+  
Sbjct: 659  VRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMKIDGGYKDCHDL 718

Query: 599  IKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKG 658
            I  Y++G L+L+PGC+AAQTLE  IT +LN IRE+AGK CM +L WRNSPLIMSQCGSKG
Sbjct: 719  IASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMNTLHWRNSPLIMSQCGSKG 778

Query: 659  SPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEF 718
            SPINISQMVACVGQQSVGGRRAPNGFIDR+LPHFP  +K PAAKGFVANSFY+GL+ATEF
Sbjct: 779  SPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTATEF 838

Query: 719  FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
            FFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD +VRNA G IVQFLYGDDGM
Sbjct: 839  FFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGM 898

Query: 779  DPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKES---CSE 835
            DPA MEGK G+PLN D+L MKV ATCP  GQ  LSP ++ +I+  +L+ +   S   CSE
Sbjct: 899  DPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDKLSEHDASSDDGCSE 958

Query: 836  AFLNSLRKFFEGQQDKLD---KKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQT 892
             F   L  F E +   L    + +   ED   +  S   E +    SGI+ KQL+VF+ T
Sbjct: 959  KFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANISGISVKQLQVFLDT 1018

Query: 893  CFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGA 952
            C SRY +K++EAG +IGAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN A
Sbjct: 1019 CLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAA 1078

Query: 953  KRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            K+ISTPIITAEL    +  +AR+VKG +EK +LG+VA++IKIV+ S   ++V+ LDM+ I
Sbjct: 1079 KKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQPNLVVKLDMQRI 1138

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP-VDKSKIHFELYSLKNVL 1071
            +  H+ I+AD V+ SI+  PKIKLK +H++V+D  KL I+P  +DKSK+ +EL+ LK++L
Sbjct: 1139 EALHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKLLYELHHLKSML 1198

Query: 1072 PMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKS 1131
            P VIVKGI TVER VI+E  +E          K+Y+LLVEGT L AVMG  G+D  KTKS
Sbjct: 1199 PKVIVKGIPTVERAVISETGEEN--------DKRYKLLVEGTNLLAVMGTPGVDAMKTKS 1250

Query: 1132 NHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGI 1191
            NHI EV +TLGIEAAR  IIDEI  TMK+HGM+ID RHMMLLADLMT++GE+LGITR+GI
Sbjct: 1251 NHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRYGI 1310

Query: 1192 QKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAV 1251
             KM  SVLMLASFEKTA+HLFNAS +GR+D+IEGVSECIIMGIPM LGTGILK+RQR   
Sbjct: 1311 AKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDH 1370

Query: 1252 PPMLKYGAPDPIMS 1265
             P  KY  PDPI++
Sbjct: 1371 LPEFKY-QPDPILA 1383


>gi|242073562|ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
 gi|241937900|gb|EES11045.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
          Length = 1391

 Score = 1645 bits (4259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 821/1276 (64%), Positives = 990/1276 (77%), Gaps = 31/1276 (2%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            MRNP+ +AL+K+  MK +  KC     K   CPRC Y NG+VKK  A L ++HD SKV +
Sbjct: 136  MRNPRADALQKSATMKKVRDKC-----KLSCCPRCDYRNGVVKKGRAGLIVVHDCSKVLD 190

Query: 61   S-LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITN 119
               +E  +A+ + KE  +A +V   +L+P  VL LF+RMTD DCE+L L +RPEKLI++ 
Sbjct: 191  GHTEELKNALQNKKEKVSANSVR--VLDPATVLSLFRRMTDEDCELLNLGDRPEKLIVSE 248

Query: 120  IAVPPIAIRPSVIMDGSQ-SNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQ 178
            IAVPP+ IRPSV++  S+ SNE+ IT  LK I+ TN+ L++ L       K    W+ LQ
Sbjct: 249  IAVPPVPIRPSVVVGSSRTSNEDSITVILKSIVNTNSILKETLHTGGPFTKCFDCWQYLQ 308

Query: 179  VEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPN 238
            ++V +Y+NSD   +P S        G VQRLKGK GRFRGNLSGKR EYTGRTVISPDPN
Sbjct: 309  LQVVEYVNSDAPCLPDSQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTGRTVISPDPN 363

Query: 239  LKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGK 298
            LKITEVAIP+ MAR+LTYPERVS++NIEKLRQCI+NGP KYPGA  +  PDG  + L   
Sbjct: 364  LKITEVAIPVLMARVLTYPERVSNYNIEKLRQCIRNGPFKYPGANFVTQPDGMKQSLKYG 423

Query: 299  FRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNP 358
             R   A +LK GCIV+RHLEDGDVVLFNRQPSLHRMSIM HRARIMPWRTLRFNESVCNP
Sbjct: 424  DRRITARDLKCGCIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNP 483

Query: 359  YNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK 418
            YNADFDGDEMN+HVPQTEEARTEAL+LMGVQNNLCTPKNGEILVASTQDFLTSSFL+TRK
Sbjct: 484  YNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLVTRK 543

Query: 419  DTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLT 478
            DTFYDR++F+L+C Y+GD M+ +DLPTPA++KP+ELWTGKQLFSVL+RP+A+ RV++NL 
Sbjct: 544  DTFYDRSSFTLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNAHTRVFLNLA 603

Query: 479  VKEKTYSNKLIRTEGDEEIRI--ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
            V+EK YS K  + E  EE     ETMCPNDG+VYFRNSEL+SGQ+GKATLGNGNKDGLYS
Sbjct: 604  VQEKIYSKKKGKKEAGEETMCGRETMCPNDGYVYFRNSELLSGQVGKATLGNGNKDGLYS 663

Query: 537  VLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCN 596
            VLLRDY +HA + CMNRLAK SAR+IGNHGFSIG+DDVQP + L+ +K K I   Y+ C+
Sbjct: 664  VLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKKKEIDGGYKKCH 723

Query: 597  VKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
              I  + +G L L PGC+AAQTLE  IT +LN IR  AG  CM +L WRNSPLIMSQCGS
Sbjct: 724  DLISLFAKGALALHPGCNAAQTLEHNITGVLNEIRSIAGNVCMDTLHWRNSPLIMSQCGS 783

Query: 657  KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
            KGSPINISQMVACVGQQSVGGRRAP+GF++R+LPHFP  +K PAAKGFVANSFY+GL+AT
Sbjct: 784  KGSPINISQMVACVGQQSVGGRRAPDGFLNRTLPHFPINSKTPAAKGFVANSFYTGLTAT 843

Query: 717  EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDD 776
            EFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD +VRNA G IVQFLYGDD
Sbjct: 844  EFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDD 903

Query: 777  GMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKES---C 833
            GMDPA MEGK G PLN D+L MKV ATCP  G   LSP+ + +++E +L  +   S   C
Sbjct: 904  GMDPAKMEGKDGMPLNLDQLFMKVMATCPQRGSDTLSPEAIKQMLEDKLLQHDTSSDGGC 963

Query: 834  SEAFLNSLRKFFEGQQDKLD---KKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFI 890
            SE F  +L +F + + + +    + +   ED      S + E V    SGI+ KQL+VF+
Sbjct: 964  SEEFKKNLTEFLDKRIELMKCTRRALHLHEDHVEKKDSCVEESVAAIISGISAKQLQVFL 1023

Query: 891  QTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN 950
             TC SRY+ K++EAG +IGAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN
Sbjct: 1024 DTCLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 1083

Query: 951  GAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDME 1010
             A++ISTPIITA+L    +  +AR+VKG +EK +LG+VA +I+IV+ S   ++++ LDM+
Sbjct: 1084 AARKISTPIITAQLLSKKDVLSARIVKGSMEKAVLGEVAVAIQIVLKSSQPNLIVKLDMQ 1143

Query: 1011 TIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP-VDKSKIHFELYSLKN 1069
             I+  H+ I+AD V+ SI+  PKIKLK +H++V+D  KL I+P   DK K+  EL++LK+
Sbjct: 1144 LIESLHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKRKLQLELHNLKS 1203

Query: 1070 VLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKT 1129
            +LP VIVKGI TVERVVI E       VK   E ++Y+LLVEGT L AVMG  G+D  KT
Sbjct: 1204 ILPKVIVKGIPTVERVVIDE-------VKVKNETERYQLLVEGTNLLAVMGTPGVDATKT 1256

Query: 1130 KSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRF 1189
            KSNHI E  QTLGIEAAR  IIDEI  TMK+HGM+ID+RHMMLLADLMT++GE+LGITR+
Sbjct: 1257 KSNHIMETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMMLLADLMTYKGEILGITRY 1316

Query: 1190 GIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRD 1249
            GI KM  SVLMLASFEKT++HLFNAS +GR+D+IEGVSECIIMGIPM LGTGILK+RQR 
Sbjct: 1317 GIAKMKSSVLMLASFEKTSEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRL 1376

Query: 1250 AVPPMLKYGAPDPIMS 1265
               P  KY  PDPI+S
Sbjct: 1377 DHVPEFKY-QPDPILS 1391


>gi|302808041|ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
 gi|300146624|gb|EFJ13293.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
          Length = 1393

 Score = 1612 bits (4174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 811/1276 (63%), Positives = 967/1276 (75%), Gaps = 41/1276 (3%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR-SKVT 59
            M+NP+ E LRK    K  +KK + +  K   CPRCG ING+VKK  + L IIHD+ +K  
Sbjct: 148  MQNPRSEILRK----KEYLKKINDLCKKVRACPRCGDINGVVKKLGSTLKIIHDKYAKNY 203

Query: 60   ESLQE----FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKL 115
            E+ +E    F  A+   KE K  +      L P+ VL LF+++   DC VL L +RPE+L
Sbjct: 204  EAFEEMAHKFDDAVKVNKEMKGYMKNIQEDLTPLKVLGLFEKIIGEDCVVLDLVDRPEQL 263

Query: 116  IITNIAVPPIAIRPSVIMDGS-QSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGW 174
            I+ ++ VPP+AIRPSV MD +  SNE+D+T +L  II+ N  ++  L    S  K +  W
Sbjct: 264  IVQHMPVPPVAIRPSVEMDAAVGSNEDDVTIKLMHIIEQNNQIRACLESGLSIAKCMEIW 323

Query: 175  ETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVIS 234
            + LQ++VA YINS++ G+P +MQ  +PL GFVQRLKGKQGRFRGNLSGKRV++TGRTVIS
Sbjct: 324  DFLQIQVAMYINSELPGLPPNMQTGKPLRGFVQRLKGKQGRFRGNLSGKRVDFTGRTVIS 383

Query: 235  PDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARV 294
            PDPNLK++EVA+PI MA+ LTYPE+VS HNIEKLRQ + NG +K+PGA  + +PDG  R 
Sbjct: 384  PDPNLKVSEVAVPILMAQTLTYPEKVSAHNIEKLRQRVINGKEKHPGANFVVFPDGVKRF 443

Query: 295  LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNES 354
            L    R ++A ELK G +V+RHLEDGD+VLFNRQPSLHRMSIMCHRAR+MPWRTLRFNES
Sbjct: 444  LKFGDRKRIASELKYGDVVERHLEDGDIVLFNRQPSLHRMSIMCHRARVMPWRTLRFNES 503

Query: 355  VCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFL 414
            VCNPYNADFDGDEMNMHVPQTEEARTEAL LMGVQNNLCTPKNGEILVASTQDFLTSSFL
Sbjct: 504  VCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFL 563

Query: 415  ITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVY 474
            ITR+DTFYDR  F+LMC YMGD ++ +DLPTPAILKPVELWTGKQLF VLIRP A ++V+
Sbjct: 564  ITRRDTFYDRGQFALMCSYMGDAVEHIDLPTPAILKPVELWTGKQLFGVLIRPSARIKVF 623

Query: 475  VNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGL 534
            +N  V EK +               ETMCP DG+V+F+NSELI GQLGK TLGNG+KDGL
Sbjct: 624  LNFVVCEKNHKKG-----------TETMCPKDGYVFFKNSELICGQLGKGTLGNGSKDGL 672

Query: 535  YSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEV 594
            ++VLLRDYG  A + CMNRLAKLSARWIGNHGFSIGIDDVQP   L+ +K K I+E Y  
Sbjct: 673  FTVLLRDYGEQAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGSRLTVEKEKRIAEGYRA 732

Query: 595  CNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQC 654
            C+  I  +N+G+L L+PGCDAAQTLE+ IT  LN+IRE AG+ C+  L WRNSPLIMSQC
Sbjct: 733  CDKHISLFNKGQLTLQPGCDAAQTLESEITGELNKIREAAGQVCVNELHWRNSPLIMSQC 792

Query: 655  GSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLS 714
            GSKGS INISQM+ACVGQQSV G RAPNGFI+RSLPHFPR  K P AKGFVANSFYSGL+
Sbjct: 793  GSKGSVINISQMIACVGQQSVSGHRAPNGFIERSLPHFPRNDKTPQAKGFVANSFYSGLT 852

Query: 715  ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYG 774
            ATEF FHTMGGREGLVDTAVKTA+TGYMSRRL+KALEDLS QYD +VRN+ G IVQ +YG
Sbjct: 853  ATEFIFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSCQYDGTVRNSSGVIVQLIYG 912

Query: 775  DDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCS 834
            DD MDP +MEG++G PLN DR+LMK KATCP      L P ++ +IVE + +  G E CS
Sbjct: 913  DDSMDPVSMEGQNGTPLNLDRVLMKAKATCPRGTTPALPPSELWKIVESKFSQDGSE-CS 971

Query: 835  EAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEE-VTHKTSGITEKQLEVFIQTC 893
             AFL+SLRKF   + D +    K +  +  DD   + +E V    SG+T +QLEVF+ TC
Sbjct: 972  TAFLDSLRKFLRKEFDTISSTRKRL-SLPLDDFGNVDDENVAANVSGLTSRQLEVFLNTC 1030

Query: 894  FSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
              RY  K+++ GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMNIT GVPRIKEIIN +K
Sbjct: 1031 IGRYHRKKLDPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASK 1090

Query: 954  RISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            +ISTPIITA+L   ++  AAR+VKGRIEKT LG VAKSIKIV+    A + I LDM+ I 
Sbjct: 1091 KISTPIITAKLVSENDVKAARIVKGRIEKTALGDVAKSIKIVLRPGQAFVSIKLDMDRIY 1150

Query: 1014 DAHLCINADIVKESIVQTPKI---KLKQQHIKVLDFRKLEIFPP-VDKSKIHFELYSLKN 1069
               L I A+ V E++++ PKI   KLK+QH+KV D R + +  P  D+ K+ F L+SL+N
Sbjct: 1151 SLQLDIRAETVAEAVLKFPKIKSMKLKEQHVKVNDDRSISLTTPESDRKKMLFALHSLQN 1210

Query: 1070 VLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKT 1129
            +LP VIVKGI TVER VI            N EK KY LLVEGT L+AVMG EG+DG +T
Sbjct: 1211 MLPKVIVKGIPTVERAVI------------NQEKGKYNLLVEGTNLKAVMGTEGVDGRET 1258

Query: 1130 KSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRF 1189
             SNHIFE  + LGIEAAR  II EI  TM +HGMSID+RHMMLLAD+MT+RGE+LGITRF
Sbjct: 1259 TSNHIFETVEVLGIEAARNGIIKEIQYTMGSHGMSIDQRHMMLLADVMTYRGEILGITRF 1318

Query: 1190 GIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRD 1249
            G+ KM  SVLMLASFEKT DHLF ASV+GR D+IEGVSECIIMGIPMPLGTG+ K+RQ+ 
Sbjct: 1319 GMAKMKDSVLMLASFEKTTDHLFAASVHGRTDQIEGVSECIIMGIPMPLGTGLFKVRQKV 1378

Query: 1250 AVPPMLKYGAPDPIMS 1265
               P L YG P P+ S
Sbjct: 1379 GRIPKLIYGPP-PLFS 1393


>gi|357148941|ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Brachypodium distachyon]
          Length = 1392

 Score = 1601 bits (4145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 808/1277 (63%), Positives = 968/1277 (75%), Gaps = 32/1277 (2%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            MRNP++E L K  LMK +  KC     K  +CP CGYING+ KK    L I+HD SK  +
Sbjct: 136  MRNPRLEPLHKAALMKKVRDKC-----KLSRCPSCGYINGVAKKGRPGLLIVHDCSKTLD 190

Query: 61   -SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITN 119
             S +E  SA++H KE  +  +V T  L+P  VL LFKRMTD DCE+L L +RPEKLIIT 
Sbjct: 191  GSTEELRSALSHKKEKLSISSVHT--LDPATVLSLFKRMTDEDCELLNLGDRPEKLIITE 248

Query: 120  IAVPPIAIRPSVIMDGSQ-SNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQ 178
            IAVPP+ IRPSV + G + SNE+ IT  L+ I+ TN+ L+  L   +   K    W+ LQ
Sbjct: 249  IAVPPVPIRPSVFVGGGRMSNEDGITCILRNIVNTNSILKGILQNGDPLMKCFDCWQLLQ 308

Query: 179  VEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPN 238
            ++V +YINSD   +           G VQRLKGK GRFRGNLSGKR EYTGRTVISPDPN
Sbjct: 309  LQVVEYINSDAPSLTDPQN-----RGLVQRLKGKTGRFRGNLSGKRTEYTGRTVISPDPN 363

Query: 239  LKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGK 298
            L+ITEVAIP+ MAR+LTYPERVS +NIEKLRQCI+NGP K+PGA  +  PDGT   L   
Sbjct: 364  LRITEVAIPVLMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFVTQPDGTKLHLKYC 423

Query: 299  FRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNP 358
             R   A +LK GCIV+RHLEDGD+VLFNRQPSLHRMSIM HRARIMPWRTLRFNESVCNP
Sbjct: 424  DRRIAARDLKYGCIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNP 483

Query: 359  YNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK 418
            YNADFDGDEMN+HVPQTEEARTEAL+LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK
Sbjct: 484  YNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK 543

Query: 419  DTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLT 478
            D FYDR+ F+L+C Y+GD M+ +DLPTPAI+KP+ELWTGKQLFSVL+RP+A  +VY+NLT
Sbjct: 544  DNFYDRSYFTLLCSYLGDAMENIDLPTPAIIKPLELWTGKQLFSVLVRPNACTKVYLNLT 603

Query: 479  VKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL 538
            V+EK Y  +  R +    +  ETMCPNDG+VYFRNSEL+SGQ+GK TLGNGNKDG++SVL
Sbjct: 604  VEEKIYMKRRERDKNAVSVLEETMCPNDGYVYFRNSELLSGQVGKKTLGNGNKDGMFSVL 663

Query: 539  LRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVK 598
            +RDY +HA + CMNRLAK SAR+IGNHGFSIG+DDVQP + L+ KK K I + Y  C+  
Sbjct: 664  VRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGESLNQKKKKTIDQGYTECHDL 723

Query: 599  IKEYNEGK--LQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
            I  Y++G    +L PGC+ AQTLE  ++ ILN++RE AG+ CM +L WRNSPLIMSQCGS
Sbjct: 724  IAVYSKGAPGAELHPGCNRAQTLEVRVSAILNQLREKAGEHCMNTLHWRNSPLIMSQCGS 783

Query: 657  KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
            KGSPINISQMV CVGQQSVGGRRAP+GFIDR+LPHFP  +K PAAKGFVANSFY+GL+AT
Sbjct: 784  KGSPINISQMVVCVGQQSVGGRRAPDGFIDRTLPHFPIHSKTPAAKGFVANSFYTGLTAT 843

Query: 717  EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDD 776
            EFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD +VRNA   IVQF+YGDD
Sbjct: 844  EFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASSGIVQFVYGDD 903

Query: 777  GMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKES--CS 834
            GMDP  MEGK G PLN D+L MKVKATCP  G   LSP+ + +++  +L+     S  CS
Sbjct: 904  GMDPVKMEGKGGSPLNLDQLFMKVKATCPQRGHDMLSPEAIMQMLNDKLSEQDMSSGGCS 963

Query: 835  EAFLNSLRKFFEGQQDKL---DKKIKFVED-IGWDDKSQILEEVTHKTSGITEKQLEVFI 890
            + F   L KFFE +   L    + +   ED +G  D S I E +    SGI+ KQL+VF+
Sbjct: 964  DKFKELLTKFFEDRIKMLRSTRRTLHLDEDHVGMKD-SSIEERIAANISGISAKQLQVFL 1022

Query: 891  QTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN 950
             TC SRY  K +EAG +IGAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN
Sbjct: 1023 DTCLSRYHSKIIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 1082

Query: 951  GAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDME 1010
             AK ISTPIITAEL    + + A  VK  +EK +LG+VA  IKIV+ S   ++V+ LDM+
Sbjct: 1083 AAKNISTPIITAELLSGQDMSFAVKVKRYVEKVVLGEVAAVIKIVLKSSQPNLVVKLDMQ 1142

Query: 1011 TIQ-DAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP-VDKSKIHFELYSLK 1068
             I+   ++ I++D V++SI++ PKIKLK +H++V+D  KL I+P   DKSK+  EL++LK
Sbjct: 1143 RIEAQGYMGISSDSVQQSIIRHPKIKLKSEHVRVIDGAKLRIYPTGTDKSKLQLELHTLK 1202

Query: 1069 NVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCK 1128
            ++LP VIVKGI TVER V+   ++  + +       +Y LLVEGT L  V+G  G+D  K
Sbjct: 1203 SMLPKVIVKGIPTVERAVVNPVKRPDKTL------DRYNLLVEGTNLLKVLGTPGVDAKK 1256

Query: 1129 TKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITR 1188
            TKSNHI EV QTLGIEAAR  IIDEI  T +++ M ID+RHMMLLADLMT++GEVLGITR
Sbjct: 1257 TKSNHIMEVNQTLGIEAARRSIIDEIRYTFESNNMIIDQRHMMLLADLMTYKGEVLGITR 1316

Query: 1189 FGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            FGI KM  SVLMLASFEKT +HLFNAS +GR+D IEGVSECIIMGIPM LG+GILK+RQR
Sbjct: 1317 FGIVKMKSSVLMLASFEKTLEHLFNASYSGREDEIEGVSECIIMGIPMTLGSGILKVRQR 1376

Query: 1249 DAVPPMLKYGAPDPIMS 1265
                P   Y  PD I+S
Sbjct: 1377 LDHLPEFNY-QPDAIIS 1392


>gi|168009054|ref|XP_001757221.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691719|gb|EDQ78080.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1397

 Score = 1563 bits (4048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 805/1287 (62%), Positives = 964/1287 (74%), Gaps = 52/1287 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKK-AVAVLGIIHDRSKVT 59
            MRNP++E L++  ++K ++ +C     +   C RCG  NG+VKK A   + +IHD+    
Sbjct: 141  MRNPRIEVLQRRAVLKKVIDRCK----RVRVCTRCGDYNGVVKKMAQPPVKLIHDKYGKA 196

Query: 60   ESLQE-----FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEK 114
              L+E        A+    E K  +N     L+P+ VL LF+ M + DCEVL L+ERPEK
Sbjct: 197  LDLKEEMIVSLEDAMKCKPELKNCINRVYDNLDPMRVLQLFESMIEQDCEVLDLAERPEK 256

Query: 115  LIITNIAVPPIAIRPSVIMDGSQ-SNENDITERLKRIIQTNASLQQELVEANSAFKSLAG 173
            LI+T++ VPP+AIRPSV M+ +  SNE+DIT RL  I+  N SL+  + +  +A K++  
Sbjct: 257  LIVTHLIVPPVAIRPSVEMESAAGSNEDDITVRLLGILNCNNSLRTCVEQGLAAEKTMET 316

Query: 174  WETLQVEVAQYINSDVRGVPFSMQ--VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRT 231
            WE LQ +V+Q INS+   VP S Q    +   GFVQRLKGKQGRFRGNLSGKRV++TGRT
Sbjct: 317  WELLQSQVSQLINSET-PVPRSEQPTSGKQPRGFVQRLKGKQGRFRGNLSGKRVDFTGRT 375

Query: 232  VISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGT 291
            VISPDPNLKITEVA+P+ MA++LTYPE+VS +NI+KLR  I NG  K+PGA  I +PDG 
Sbjct: 376  VISPDPNLKITEVAVPLLMAQLLTYPEKVSRYNIDKLRGRIINGMTKHPGANFIIFPDGN 435

Query: 292  ARVLYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 349
               LY KF  R + A ELK G IV+RHLEDGD+VLFNRQPSLHRMSIM HRARIMPWRTL
Sbjct: 436  K--LYLKFGDRRRYAAELKYGDIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 493

Query: 350  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFL 409
            RFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL+LMGV NNLCTPKNGEILVASTQDFL
Sbjct: 494  RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVANNLCTPKNGEILVASTQDFL 553

Query: 410  TSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHA 469
            TSS+L TRKDTFYDRA F+  C YMGD  + +DLPTP+I+KP+ELWTGKQLFSVL+RP+A
Sbjct: 554  TSSYLFTRKDTFYDRATFTQACVYMGDAAENIDLPTPSIIKPMELWTGKQLFSVLVRPNA 613

Query: 470  NMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNG 529
              RV+VNL   EK Y         D++    +MCP DG+VYFRNSELI GQLGKATLGNG
Sbjct: 614  KTRVFVNLVSYEKNY---------DKKANKGSMCPTDGYVYFRNSELICGQLGKATLGNG 664

Query: 530  NKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLIS 589
            NKDGL++VLLRDYG  A + CMNRLAKLSARWIGNHGFSIGIDDV P   L+ +K K I+
Sbjct: 665  NKDGLFTVLLRDYGNEAAAVCMNRLAKLSARWIGNHGFSIGIDDVAPSDRLNREKEKQIT 724

Query: 590  ENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPL 649
            + Y  C+  I+ Y +GKL+L+PGC+AAQTLE+ +T  LN+IRE AG  C   L WRNSPL
Sbjct: 725  KGYNACDQHIQLYKKGKLELQPGCNAAQTLESAVTGELNKIREAAGNVCKDELHWRNSPL 784

Query: 650  IMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSF 709
            IMS+CGSKGS INISQMVACVGQQSVGG+RAPNGFIDR+LPHFPR  + P  KGFVANSF
Sbjct: 785  IMSECGSKGSFINISQMVACVGQQSVGGKRAPNGFIDRTLPHFPRHDRTPQGKGFVANSF 844

Query: 710  YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIV 769
            YSGLSATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+KALEDLS QYD +VRN+ G IV
Sbjct: 845  YSGLSATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSAQYDGTVRNSSGGIV 904

Query: 770  QFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG 829
            Q LYGDDGMDP  MEGK G P N DR+LMK KATCP  GQ  L P ++ ++  ++L    
Sbjct: 905  QLLYGDDGMDPVYMEGKDGAPFNLDRMLMKTKATCPSYGQLGLPPTEIEKLFNERLTKPD 964

Query: 830  KESCS-EAFLNSLRKFFEGQ-QDKLDKKIKF---VEDIGWDDKSQILEEVTHKTSGITEK 884
              S +  AF  SL+KF +   +D +  + K    ++  G  D++ +LE      SG+T +
Sbjct: 965  MTSETVGAFKTSLKKFMDSCIKDNISTRTKLGLPLDCNGGPDQT-LLESTATYISGLTSR 1023

Query: 885  QLE-----VFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNIT 939
            QLE     VF+ TC  RY +KRVE G A+GA+GAQSIGEPGTQMTLKTFHFAGVASMNIT
Sbjct: 1024 QLEICLLQVFLDTCIKRYHMKRVEPGAAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNIT 1083

Query: 940  QGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSR 999
             GVPRIKEIIN +K ISTPIITA L   ++E AAR+VKGRIEKT LG+VAKSIK V+ + 
Sbjct: 1084 LGVPRIKEIINASKNISTPIITAVLVSGNDEKAARIVKGRIEKTTLGEVAKSIKTVLRAS 1143

Query: 1000 LASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP-VDKS 1058
             A I + LDM+ I    L IN+D V  +IVQTPKIKLK  +I+++D  KL + PP  DK 
Sbjct: 1144 QAIISVKLDMKRIDALQLDINSDTVALAIVQTPKIKLKHVNIRIVDRDKLIVIPPDQDKG 1203

Query: 1059 KIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
            K++F L+SL N+LP VIVKGI +VER VI            N EK  Y LLVEGT L+AV
Sbjct: 1204 KLYFYLHSLCNMLPKVIVKGIPSVERAVI------------NKEKGVYNLLVEGTNLKAV 1251

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            MG  G++G  TKSNH+ E +QTLGIEAAR  IIDEI  TM +HGM+ID RHMMLLAD+MT
Sbjct: 1252 MGISGVNGKLTKSNHVIEAEQTLGIEAARNVIIDEIQYTMGSHGMTIDARHMMLLADVMT 1311

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
            ++GEVLGITRFGI KM  SVLMLASFEKT DHLF+A+++GR D+IEGVSECIIMGIPMP+
Sbjct: 1312 YKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAIHGRVDKIEGVSECIIMGIPMPI 1371

Query: 1239 GTGILKIRQRDAVPPMLKYGAPDPIMS 1265
            GTG+ KIRQ+    P L YG P P++S
Sbjct: 1372 GTGLFKIRQKVEKLPKLSYG-PTPLLS 1397


>gi|357138371|ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Brachypodium distachyon]
          Length = 1400

 Score = 1512 bits (3915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 777/1284 (60%), Positives = 942/1284 (73%), Gaps = 44/1284 (3%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-----VAVLGIIHDR 55
            MRNP+ +   ++ +M  +  KC     +  +C  CGYING+VKK         + I+HD 
Sbjct: 139  MRNPRAD---RSSIMIKVRDKC-----RPSRCSWCGYINGIVKKEGRRALKQTVVIVHDC 190

Query: 56   SK-VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEK 114
            SK +  S +E  S ++H KE  +  +V T  L+PV VL LF+R+TD DCE+L + ERPE 
Sbjct: 191  SKNLDASTEEVRSVLSHKKEKLSITSVHT--LDPVTVLSLFRRITDEDCELLAIGERPEN 248

Query: 115  LIITNIAVPPIAIRPSVIMDGS-QSNENDITERLKRIIQTNASLQQELVEANSAFKSLAG 173
            LIIT+IAVPP+ IRPS  + G+  SNE+ IT  L+ I+  N+ L+  + +     K    
Sbjct: 249  LIITDIAVPPVPIRPSRFVAGTTMSNEDSITSILRNIVNANSHLKLTIQDGQVPMKCFTW 308

Query: 174  WETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVI 233
            WE LQ  V +YINSD      S+Q ++   G +QRLKGK GRFRGNLSGKR E+TGRTVI
Sbjct: 309  WEQLQDNVIEYINSDAS----SLQDSKD-CGLIQRLKGKTGRFRGNLSGKRTEHTGRTVI 363

Query: 234  SPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTAR 293
            SPDPNL+ITEVAIP+ MAR+LTYPERV+ +NIEKLRQCI+NGP K+PGA  I  PD T  
Sbjct: 364  SPDPNLRITEVAIPVLMARVLTYPERVTYYNIEKLRQCIRNGPHKHPGANFIIQPDETKL 423

Query: 294  VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNE 353
             L    R++ A +LK GCIV+RHLEDGD+VLFNRQPSLHRMSIM HRARIMPWRTLRFNE
Sbjct: 424  HLNYCDRSRAARDLKYGCIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 483

Query: 354  SVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSF 413
            SVCNPYNADFDGDEMN+HVPQTEEARTEA LLMGVQ+NLCTPKNGEILVASTQDFLTSSF
Sbjct: 484  SVCNPYNADFDGDEMNLHVPQTEEARTEAFLLMGVQSNLCTPKNGEILVASTQDFLTSSF 543

Query: 414  LITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRV 473
            L+TRKDTFYDR+ F+L+C Y+GD M+ +DLPTPAI+KPVELWTGKQLFSVL+RP+A  +V
Sbjct: 544  LVTRKDTFYDRSYFTLLCSYLGDAMENIDLPTPAIIKPVELWTGKQLFSVLVRPNACTKV 603

Query: 474  YVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDG 533
            ++NLTV+EK Y     R +    +  ETMCPNDGFVYFRNSEL+SGQLGK TLGNGNK+G
Sbjct: 604  FLNLTVEEKVYIKHKERDKKAITVLEETMCPNDGFVYFRNSELLSGQLGKKTLGNGNKEG 663

Query: 534  LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYE 593
            ++SVLLRDY +HA + CMNRLAK SAR+IGNHGFSIG+DDVQP + L+ KK  +I E YE
Sbjct: 664  MFSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGQSLNKKKKVIIDEGYE 723

Query: 594  VCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQ 653
             CN  I  Y++G L+ +PGC  AQTLE+ I+ +LN++RE AG  CM +L WRNSPLIMSQ
Sbjct: 724  ECNKLIALYSKGHLKPQPGCSRAQTLESQISCVLNKLRETAGDDCMSTLHWRNSPLIMSQ 783

Query: 654  CGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGL 713
            CGSKGSPINISQMV CVGQQSVGG RAPNGFIDR+LPHFP  +K PAAKGFVANSFY+GL
Sbjct: 784  CGSKGSPINISQMVVCVGQQSVGGCRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGL 843

Query: 714  SATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLY 773
            +A+EFFFHTMGGREGLVDTAVKTADTGY+SRRL+K LEDLS+ YD +VRNA G IVQF+Y
Sbjct: 844  TASEFFFHTMGGREGLVDTAVKTADTGYLSRRLMKGLEDLSVFYDQTVRNASGGIVQFVY 903

Query: 774  GDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSP----QQVSEIVEKQLAAYG 829
            GDDGMDP  MEGK G PLN D+L MKVKATCP  G   LSP    Q  ++ + KQ  + G
Sbjct: 904  GDDGMDPVKMEGKGGSPLNLDQLFMKVKATCPQRGHDTLSPDVILQMFNDTLFKQETSSG 963

Query: 830  KESCSEAFLNSLRKFFEGQQDKL---DKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQL 886
            +  CS+     L KF E +   L    + +   ED      S + E +    SGI+ KQL
Sbjct: 964  R--CSDKLKEMLTKFLEDRVKMLRSTRRALHIDEDHVGRRDSSVEECIAADISGISAKQL 1021

Query: 887  EVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIK 946
            +VF+ TCFSRY  K +EAG ++G IGA SIGEPGTQMTLKTFHFAGVASMN+T GVPRIK
Sbjct: 1022 QVFLDTCFSRYHSKIIEAGASVGPIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1081

Query: 947  EIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIA 1006
            EIIN AK+ STPIIT EL    +++ A  VK  IEK +LG+VA +I IV     +++V+ 
Sbjct: 1082 EIINAAKKTSTPIITTELLSGQDKSFAVKVKSSIEKVVLGEVAAAINIVFKETDSNLVVK 1141

Query: 1007 LDMETIQ-DAHLCINADIVKESIVQTPKI----KLKQQHIKVLDFRKLEIFPP-VDKSKI 1060
            LDME I+   ++ I++D V+ SI+   +I    KL  +H+ V+D  KL I      KS +
Sbjct: 1142 LDMERIEAQGYMGISSDSVRLSILNHRRIRLELKLTSEHVCVVDQAKLRIHAAGKGKSGL 1201

Query: 1061 HFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMG 1120
              EL++LK++LP VIVKGI TVER V+    +  +         +Y LLVEGT L AV+G
Sbjct: 1202 LLELHNLKSMLPKVIVKGIPTVERAVVNPVFRHDKTF------DRYNLLVEGTNLLAVLG 1255

Query: 1121 AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFR 1180
              G+D  KTKSNHI EV QTLGIEAAR  IIDEI  T + + M ID RHMMLLAD+MT +
Sbjct: 1256 TPGVDAKKTKSNHIMEVSQTLGIEAARRSIIDEIRYTFENNNMMIDLRHMMLLADVMTSK 1315

Query: 1181 GEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
            GEVL +T  GI KM  SVLMLASFE+T DHLFNAS  GR D IEGVSEC+IMG+PM  GT
Sbjct: 1316 GEVLPMTAHGIAKMKTSVLMLASFERTMDHLFNASYAGRVDEIEGVSECVIMGMPMKPGT 1375

Query: 1241 GILKIRQRDAVPPMLKYGAPDPIM 1264
            GILK++QR    P  +Y  PDP++
Sbjct: 1376 GILKVKQRLPDLPEFQY-QPDPLV 1398


>gi|302785289|ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii]
 gi|300158014|gb|EFJ24638.1| hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii]
          Length = 1348

 Score = 1489 bits (3856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 755/1204 (62%), Positives = 902/1204 (74%), Gaps = 52/1204 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR-SKVT 59
            M+NP+ E LRK    K  +KK + +  K   CPRCG ING+VKK  + L IIHD+ +K  
Sbjct: 148  MQNPRSEILRK----KEYLKKINDLCKKVRACPRCGDINGVVKKLGSTLKIIHDKYAKNY 203

Query: 60   ESLQE----FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKL 115
            E+ +E    F  A+   KE K  +      L P+ VL LF+++   DC VL L +RPE+L
Sbjct: 204  EAFEEMAHKFDDAVKVNKEMKGYMKNIQEDLTPLKVLGLFEKIIGEDCVVLDLVDRPEQL 263

Query: 116  IITNIAVPPIAIRPSVIMDGS-QSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGW 174
            I+ ++ VPP+AIRPSV MD +  SNE+D+T +L  II+ N  ++  L    S  K +  W
Sbjct: 264  IVQHMPVPPVAIRPSVEMDAAVGSNEDDVTIKLMHIIEQNNQIRACLESGLSIAKCMEIW 323

Query: 175  ETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVIS 234
            + LQ++VA YINS++ G+P +MQ  +PL GFVQRLKGKQGRFRGNLSGKRV++TGRTVIS
Sbjct: 324  DFLQIQVAMYINSELPGLPPNMQTGKPLRGFVQRLKGKQGRFRGNLSGKRVDFTGRTVIS 383

Query: 235  PDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARV 294
            PDPNLK++EVA+PI MA+ LTYPE+VS HNIEKLRQ + NG +K+PGA  + +PDG  R 
Sbjct: 384  PDPNLKVSEVAVPILMAQTLTYPEKVSAHNIEKLRQRVINGKEKHPGANFVVFPDGVKRF 443

Query: 295  LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNES 354
            L    R ++A ELK G +V+RHLEDGD+VLFNRQPSLHRMSIMCHRAR+MPWRTLRFNES
Sbjct: 444  LKFGDRKRIASELKYGDVVERHLEDGDIVLFNRQPSLHRMSIMCHRARVMPWRTLRFNES 503

Query: 355  VCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFL 414
            VCNPYNADFDGDEMNMHVPQTEEARTEAL LMGVQNNLCTPKNGEILVASTQDFLTSSFL
Sbjct: 504  VCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFL 563

Query: 415  ITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVY 474
            ITR+DTFYDR  F+LMC YMGD ++ +DLPTPAILKPVELWTGKQLF VLIRP A ++V+
Sbjct: 564  ITRRDTFYDRGQFALMCSYMGDAVEHIDLPTPAILKPVELWTGKQLFGVLIRPSARIKVF 623

Query: 475  VNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGL 534
            +N  V EK +               ETMCP DG+V+F+NSELI GQLGK TLGNG+KDGL
Sbjct: 624  LNFVVCEKNHKKG-----------TETMCPKDGYVFFKNSELICGQLGKGTLGNGSKDGL 672

Query: 535  YSVLLRDYGAHATSGCMNRLAKLS----ARWIGNHGFSIGIDDVQPKKELSDKKGKLISE 590
            ++VLLRDYG  A + CMNRLAKL     ARWIGNHGFSIGIDDVQP   L+ +K K I+E
Sbjct: 673  FTVLLRDYGEQAAASCMNRLAKLRHSYFARWIGNHGFSIGIDDVQPGSRLTVEKEKRIAE 732

Query: 591  NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLI 650
             Y  C+  I  +N+G+L L+PGCDAAQTLE+ IT  LN+IRE AG+ C+  L WRNSPLI
Sbjct: 733  GYRACDKHISLFNKGQLTLQPGCDAAQTLESEITGELNKIREAAGQVCVNELHWRNSPLI 792

Query: 651  MSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFY 710
            MSQCGSKGS INISQM+ACVGQQSV G RAPNGFI+RSLPHFPR  K P AKGFVANSFY
Sbjct: 793  MSQCGSKGSVINISQMIACVGQQSVSGHRAPNGFIERSLPHFPRNDKTPQAKGFVANSFY 852

Query: 711  SGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQ 770
            SGL+ATEF FHTMGGREGLVDTAVKTA+TGYMSRRL+KALEDLS QYD +VRN+ G IVQ
Sbjct: 853  SGLTATEFIFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSCQYDGTVRNSSGVIVQ 912

Query: 771  FLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGK 830
             +YGDD MDP +MEG++G PLN DR+LMK KATCP      L P ++ +IVE + +  G 
Sbjct: 913  LIYGDDSMDPVSMEGQNGTPLNLDRVLMKAKATCPRGATPALPPSELWKIVESKFSQDGS 972

Query: 831  ESCSEAFLNSLRKFFEGQQDKLD---KKIKF-VEDIG-WDDKSQILEEVTHKTSGITEKQ 885
            E CS AFL+SLRKF   + D +    K++   +ED G  DD     E V    SG+T +Q
Sbjct: 973  E-CSMAFLDSLRKFLRKEFDTISSTRKRLSLPLEDFGNLDD-----ENVAANVSGLTSRQ 1026

Query: 886  LEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRI 945
            LEVF+ TC  RY  K+++ GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMNIT GVPRI
Sbjct: 1027 LEVFLNTCIGRYHRKKLDPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRI 1086

Query: 946  KEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVI 1005
            KEIIN +K+ISTPIITA+L   ++  AAR+VKGRIEKT LG VAKSIKIV+    A + I
Sbjct: 1087 KEIINASKKISTPIITAKLVSENDVKAARIVKGRIEKTALGDVAKSIKIVLRPGQAFVSI 1146

Query: 1006 ALDMETIQDAHLCINADIVKESIVQTPKI---KLKQQHIKVLDFRKLEIFPP-VDKSKIH 1061
             LDM+ I    L I A+ V E++++ PKI   KLK+QH+KV D R + +  P  D+ K+ 
Sbjct: 1147 KLDMDRIYSLQLDIRAETVAEAVLKFPKIKSMKLKEQHVKVNDDRSISLTTPESDRKKML 1206

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            F L+SL+N+LP VIVKGI TVER VI            N EK KY LLVEGT L+AVMG 
Sbjct: 1207 FALHSLQNMLPKVIVKGIPTVERAVI------------NQEKGKYNLLVEGTNLKAVMGT 1254

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
            EG+DG +T SNHIFE  + LGIEAAR  II EI  TM +HGMSID+RHMMLLAD+MT+RG
Sbjct: 1255 EGVDGRETTSNHIFETVEVLGIEAARNGIIKEIQYTMGSHGMSIDQRHMMLLADVMTYRG 1314

Query: 1182 EVLG 1185
            E  G
Sbjct: 1315 EFWG 1318


>gi|222629113|gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
          Length = 1321

 Score = 1472 bits (3812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 764/1275 (59%), Positives = 920/1275 (72%), Gaps = 99/1275 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMV-KKAVAVLGIIHDRSKVT 59
            MRNPK + L+K+ +MK +  KC     K  +CP CG+ING V KK  A L I+HD SK  
Sbjct: 136  MRNPKADPLQKSAIMKKVRDKC-----KLSRCPWCGFINGSVAKKGRAGLIILHDCSKTL 190

Query: 60   E-SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIIT 118
            + S +E   A++H KE K +++ A  +L+P  VL LFKRMTD DCE+L L +RPEKLI+T
Sbjct: 191  DGSTEELRDALSHKKE-KLSIS-AVRMLDPAIVLSLFKRMTDEDCELLNLGDRPEKLIVT 248

Query: 119  NIAVPPIAIRPSVIMDGSQ-SNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETL 177
             IAVPP+ IRPSV + G + SNE+ IT  LK I  TN+ L++ L       K    W+ L
Sbjct: 249  EIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMKCFDCWQHL 308

Query: 178  QVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDP 237
            Q++V +YINSD   +P S        G VQRLKGK GRFRGNLSGKR EYTGRTVISPDP
Sbjct: 309  QLQVVEYINSDAPSLPESQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTGRTVISPDP 363

Query: 238  NLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYG 297
            NL+ITEVAIPI MAR+LTYPERVS +NIEKLRQCI+NGP K+PGA  I  PDGT   L  
Sbjct: 364  NLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQPDGTKLHLKY 423

Query: 298  KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCN 357
              R   A +LK GC+V+RHLEDGD+VLFNRQPSLHRMSIM HRARIMPWRTLRFNESVCN
Sbjct: 424  CDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCN 483

Query: 358  PYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR 417
            PYNADFD                      G + NL  P+  E   A T+  +        
Sbjct: 484  PYNADFD----------------------GDEMNLHVPQTEE---ARTEALM-------- 510

Query: 418  KDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNL 477
                                          ++ P+ELWTGKQLFSVL+RP+A  +V++NL
Sbjct: 511  ------------------------------LMGPIELWTGKQLFSVLVRPNACTKVFLNL 540

Query: 478  TVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
            TVKEK Y     +T     +  E MCPNDGFVYFRNSEL+SGQ+GKATLGNGNKDG++S 
Sbjct: 541  TVKEKIY-----KTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLGNGNKDGMFST 595

Query: 538  LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNV 597
            L+RDY +HA + CMNRLAK SAR+IGNHGFSIG+DDVQP + L+ +K   I   Y+ C+ 
Sbjct: 596  LVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMKIDGGYKDCHD 655

Query: 598  KIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSK 657
             I  Y++G L+L+PGC+AAQTLE  IT +LN IRE+AGK CM +L WRNSPLIMSQCGSK
Sbjct: 656  LIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMNTLHWRNSPLIMSQCGSK 715

Query: 658  GSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATE 717
            GSPINISQMVACVGQQSVGGRRAPNGFIDR+LPHFP  +K PAAKGFVANSFY+GL+ATE
Sbjct: 716  GSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTATE 775

Query: 718  FFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDG 777
            FFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD +VRNA G IVQFLYGDDG
Sbjct: 776  FFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDG 835

Query: 778  MDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKES---CS 834
            MDPA MEGK G+PLN D+L MKV ATCP  GQ  LSP ++ +I+  +L+ +   S   CS
Sbjct: 836  MDPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDKLSEHDASSDDGCS 895

Query: 835  EAFLNSLRKFFEGQQDKLD---KKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQ 891
            E F   L  F E +   L    + +   ED   +  S   E +    SGI+ KQL+VF+ 
Sbjct: 896  EKFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANISGISVKQLQVFLD 955

Query: 892  TCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIING 951
            TC SRY +K++EAG +IGAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN 
Sbjct: 956  TCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINA 1015

Query: 952  AKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
            AK+ISTPIITAEL    +  +AR+VKG +EK +LG+VA++IKIV+ S   ++V+ LDM+ 
Sbjct: 1016 AKKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQPNLVVKLDMQR 1075

Query: 1012 IQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP-VDKSKIHFELYSLKNV 1070
            I+  H+ I+AD V+ SI+  PKIKLK +H++V+D  KL I+P  +DKSK+ +EL+ LK++
Sbjct: 1076 IEALHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKLLYELHHLKSM 1135

Query: 1071 LPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTK 1130
            LP VIVKGI TVER VI+E  +E          K+Y+LLVEGT L AVMG  G+D  KTK
Sbjct: 1136 LPKVIVKGIPTVERAVISETGEEN--------DKRYKLLVEGTNLLAVMGTPGVDAMKTK 1187

Query: 1131 SNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFG 1190
            SNHI EV +TLGIEAAR  IIDEI  TMK+HGM+ID RHMMLLADLMT++GE+LGITR+G
Sbjct: 1188 SNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRYG 1247

Query: 1191 IQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDA 1250
            I KM  SVLMLASFEKTA+HLFNAS +GR+D+IEGVSECIIMGIPM LGTGILK+RQR  
Sbjct: 1248 IAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLD 1307

Query: 1251 VPPMLKYGAPDPIMS 1265
              P  KY  PDPI++
Sbjct: 1308 HLPEFKY-QPDPILA 1321


>gi|297746170|emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score = 1379 bits (3569), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 676/910 (74%), Positives = 760/910 (83%), Gaps = 23/910 (2%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMAS--KAVKCPRCGYINGMVKKAVAVLGIIHDRSKV 58
            MR+ KMEAL+K +LMK IV+KC+ MAS  KAVKC RCGY+NG+VKKAV+VLGIIHDRSK+
Sbjct: 133  MRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVSVLGIIHDRSKI 192

Query: 59   TE-SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLII 117
             + SL+E +SAI+HTKESKA+ +V   ILNPV VL LFKRM D DC++L L+ERPEKL++
Sbjct: 193  ADGSLEECSSAISHTKESKASFSVVD-ILNPVKVLSLFKRMMDEDCDLLNLAERPEKLVL 251

Query: 118  TNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWET 176
            TNI VPPIAIRPSV MDG +QSNEND+TERLKRIIQ NASL QEL +  S  K LAGW+ 
Sbjct: 252  TNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGSTSKCLAGWDY 311

Query: 177  LQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPD 236
            LQ+EVAQYINSDVRGVP +MQ ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPD
Sbjct: 312  LQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPD 371

Query: 237  PNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY 296
            PNLKITEVAIPI MA+IL+YPERVS HNIEKLRQCI NGP KYPGA++IRYPDG+ R L 
Sbjct: 372  PNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIRYPDGSMRSLM 431

Query: 297  GKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 356
               R + A ELK G IV+RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC
Sbjct: 432  FSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 491

Query: 357  NPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
            NPYNADFDGDEMNMHVPQTEEARTEAL+LMGVQNNLCTPKNGEILVASTQDFLTSSFLIT
Sbjct: 492  NPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 551

Query: 417  RKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
            RKDTFYDRAAFSLMC YMGDGMD VDLPTPAI+K +ELWTGKQLF+VL+RPHAN+RVY+N
Sbjct: 552  RKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKAMELWTGKQLFNVLLRPHANVRVYLN 611

Query: 477  LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
            LTV EKTY+ +  +         ETMCP+DGFVYFRNSELISGQLGKATLGNGNKDGL+S
Sbjct: 612  LTVMEKTYNKRRGK---------ETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLFS 662

Query: 537  VLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCN 596
            VLLRDY AHA + CMNRLAKLSARWIGNHGFSIGIDDVQP   L+D+K K I E YE C+
Sbjct: 663  VLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYENCH 722

Query: 597  VKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
              I++YN+GKL+L+PGC+AAQTLEA IT +LN+IRE     CM  L WRNSPLIMSQCGS
Sbjct: 723  ELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEELHWRNSPLIMSQCGS 782

Query: 657  KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
            KGSPINISQM+ACVGQQSVGGRRAP+GFIDR+LPHFPRK+K P AKGFVA+SFY+GL+AT
Sbjct: 783  KGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTAT 842

Query: 717  EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDD 776
            EFFFHTMGGREGLVDTAVKTADTGYMSRRL+KALEDLSIQYD +VRNA G IVQFLYGDD
Sbjct: 843  EFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDD 902

Query: 777  GMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAY--GKESCS 834
            GMDPA MEGK G PLNF+RL +KVKATCP      LS  Q+ E V K+L  +    E CS
Sbjct: 903  GMDPARMEGKDGFPLNFNRLFLKVKATCPAGENASLSALQIEETV-KRLKEHNTSAEGCS 961

Query: 835  EAFLNSLRKFFEGQQDKLDKKIKFV----EDIGWDDKSQILEEVTHKTSGITEKQLEVFI 890
            +AF  +L  F E  ++K     + +    E +G ++   I E+     SGIT KQL+  +
Sbjct: 962  DAFKTNLSGFLEECKEKFKNTREALGLHGEHVG-EENLDIQEKFAKNISGITSKQLQ-HV 1019

Query: 891  QTCFSRYRVK 900
             T  S  +VK
Sbjct: 1020 NTDHSHLQVK 1029



 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 287/384 (74%), Positives = 323/384 (84%), Gaps = 12/384 (3%)

Query: 882  TEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQG 941
            + K+L VF+ TC SRY++KR+EAGTAIGAIGA SIGEPGTQMTLKTFHFAGVASMN+T G
Sbjct: 1448 SRKRLGVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLG 1507

Query: 942  VPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLA 1001
            VPRIKEIINGAKRISTPIITA LECN+N   AR+VKGRIE+T LGQVAKSIKIV+TSRLA
Sbjct: 1508 VPRIKEIINGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLA 1567

Query: 1002 SIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIH 1061
             I +ALDME IQ + L I+++IV+ESI++  +IKLKQQHIKVLD  KLE+ P  D+S IH
Sbjct: 1568 LIAVALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEVHPQGDRSTIH 1627

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            FEL++LKN+LP V+VKGI+TVER VI          K+N  K KY LLVEGTGLQ VMG 
Sbjct: 1628 FELHALKNLLPTVVVKGIETVERAVIN---------KDN--KVKYNLLVEGTGLQTVMGT 1676

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
            EG+ G +T SNHI EVQQTLGIEAAR CII+EI  TM +HGMSID RHMMLLADLMTFRG
Sbjct: 1677 EGVIGRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRG 1736

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASV+GRDD+IEGVSECIIMGIPM LGTG
Sbjct: 1737 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTG 1796

Query: 1242 ILKIRQRDAVPPMLKYGAPDPIMS 1265
            ILK+RQR    P L YG  DPI+S
Sbjct: 1797 ILKVRQRLQQVPELSYGL-DPIIS 1819


>gi|255076723|ref|XP_002502032.1| predicted protein [Micromonas sp. RCC299]
 gi|226517297|gb|ACO63290.1| predicted protein [Micromonas sp. RCC299]
          Length = 1479

 Score = 1373 bits (3553), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 690/1271 (54%), Positives = 887/1271 (69%), Gaps = 58/1271 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR-SKVT 59
             RNP++E + K  L K +  KC     +   CP CG  NG VK+  A L I+H++ SK  
Sbjct: 150  FRNPRLEIVPKRALSKKLADKCK----RCRICPSCGAANGAVKRTGASLKIVHEKYSKNP 205

Query: 60   ESLQ----EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKL 115
            E ++    EF  A+ H  + KA +      LNP+ V  +  +++  DCE+L +++RPE L
Sbjct: 206  ELMEAYVKEFEEAVKHNDQLKANLARVQDDLNPIRVESILSKISPMDCELLDVADRPEHL 265

Query: 116  IITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGW 174
            I+T++ VPP+ IRPSV M+G + SNE+DIT +L +II+ N  L+Q L +  +    +  W
Sbjct: 266  ILTHLPVPPVCIRPSVEMEGQAGSNEDDITMKLIQIIEVNNVLRQGLEKGLAINNLMENW 325

Query: 175  ETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVI 233
            + LQ++ A YINS++ G+    Q   +PL GFVQRLKGKQGRFRGNLSGKRV+++GRTVI
Sbjct: 326  DFLQIQCAMYINSELPGLSAQYQGPGKPLRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVI 385

Query: 234  SPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTAR 293
            SPDPNL+I EV +P+ +A+++TYPE VS HNIE +R+ ++NG +K+PGA  +R+  G  +
Sbjct: 386  SPDPNLRIDEVGVPMHIAKMMTYPEVVSRHNIEMIRERVRNGMNKHPGANFVRFKSGGTQ 445

Query: 294  VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNE 353
             L    R ++A ELK G +V+RHL DGDV+LFNRQPSLH+MSIM HRAR+MPWRTLRFNE
Sbjct: 446  YLKYGDRRRVASELKYGDVVERHLHDGDVLLFNRQPSLHKMSIMAHRARVMPWRTLRFNE 505

Query: 354  SVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSF 413
             VC PYNADFDGDEMN+H PQTEEAR EA+ LM V NNLCTPKNGEILVA+TQDFLT+S+
Sbjct: 506  CVCTPYNADFDGDEMNIHCPQTEEARAEAINLMSVHNNLCTPKNGEILVAATQDFLTASY 565

Query: 414  LITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRV 473
            ++T +D F DRA    +  YMGD +  VDLPTPAI+KPVELWTGKQLFSVLIRP A  RV
Sbjct: 566  ILTARDHFLDRAQVGALIAYMGDALMAVDLPTPAIIKPVELWTGKQLFSVLIRPRAVDRV 625

Query: 474  YVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDG 533
            +VNL V EK YS K  R           MCP DG+V  +NSE++ GQLGKATLG+GNK+G
Sbjct: 626  FVNLEVAEKNYSKKDTR----------HMCPRDGYVCIQNSEIMCGQLGKATLGSGNKNG 675

Query: 534  LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYE 593
            L+ VL  +YG+  T+ CMNR+AKLSARW+G  GFS+GIDDV P   L D+KGK++   Y 
Sbjct: 676  LFYVLNSEYGSEQTASCMNRVAKLSARWLGTRGFSVGIDDVTPGHRLQDEKGKVVDRGYG 735

Query: 594  VCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQ 653
             C+ +I+ +  G L L+PGC+A QTLEA +  IL+ +RE AG  C+  LP  N+PLIM+ 
Sbjct: 736  ACDERIEAFKRGTLALQPGCNAEQTLEAEVLGILSTVRETAGNVCLDELPRHNAPLIMAL 795

Query: 654  CGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGL 713
            CGSKGS INISQMVACVGQQ+VGG R P+GF +RSLPHF R  K PAAKGFVANSF+SG+
Sbjct: 796  CGSKGSTINISQMVACVGQQAVGGTRPPDGFAERSLPHFKRGEKTPAAKGFVANSFFSGM 855

Query: 714  SATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLY 773
              TEFFFHTM GREGLVDTAVKTA+TGYMSRRL+KALEDLS++YD +VRN+ G IVQ  Y
Sbjct: 856  RPTEFFFHTMAGREGLVDTAVKTAETGYMSRRLMKALEDLSLRYDGTVRNSTGGIVQLSY 915

Query: 774  GDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESC 833
            GDDGM+P  MEG   +P+ F RLL  VK   P AG      ++++ + + ++        
Sbjct: 916  GDDGMEPTEMEGADAQPVEFPRLLQHVKGLVPRAGSGLSHSRKIA-VAKAEMHTRAAAMN 974

Query: 834  SEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILE--EVTHKTSGITEKQLEVFIQ 891
            +E   +   K  +G        +KF  D+    ++ ++   +      G+T+ QL+ F++
Sbjct: 975  NE---DGAHKIKDGMS------VKFKHDLVRFARANLVRVGKPEGHGVGVTKAQLDEFLE 1025

Query: 892  TCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIING 951
             C  +Y  KR+E G+A+GA+GAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN 
Sbjct: 1026 RCVRKYSAKRIEPGSAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINA 1085

Query: 952  AKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
            AK ISTPIITA LEC+DN  AARVVKGR+EKT LG+V K I +V       + + LD   
Sbjct: 1086 AKNISTPIITATLECDDNVKAARVVKGRVEKTTLGEVCKFIDVVYNPSACYVEVCLDPAV 1145

Query: 1012 IQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIH---------- 1061
            I    L +  + V+ S++  PK+KLK   +       + + PP ++SK            
Sbjct: 1146 ISALQLDVTVESVRHSLITAPKLKLKANTVLHAGENLIHVLPPDEESKSKAAAAQGAAAY 1205

Query: 1062 ----FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQA 1117
                F L +L+  +P VIV+GI +V R VI            +  + KY L+VEGT LQA
Sbjct: 1206 RRALFHLQTLRTAVPNVIVQGIPSVSRAVI-----------NDVGQGKYNLVVEGTNLQA 1254

Query: 1118 VMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLM 1177
            VMG EG+ G  T +NH+ E ++TLGIEAAR CII EIN+TMKAHGMSID RH MLLAD+M
Sbjct: 1255 VMGVEGVKGTHTTTNHVMEAERTLGIEAARSCIIKEINDTMKAHGMSIDARHSMLLADVM 1314

Query: 1178 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP 1237
            T++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+A+++GR D I+GVSECIIMGIPMP
Sbjct: 1315 TYKGEVLGITRFGMAKMKDSVLMLASFEKTTDHLFDAALHGRTDTIDGVSECIIMGIPMP 1374

Query: 1238 LGTGILKIRQR 1248
            +GTG+ K++ R
Sbjct: 1375 VGTGMFKLQHR 1385


>gi|145342014|ref|XP_001416093.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576317|gb|ABO94385.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1395

 Score = 1351 bits (3497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/1272 (53%), Positives = 892/1272 (70%), Gaps = 71/1272 (5%)

Query: 2    RNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR-----S 56
            RNP++E  ++  L K + +KC     +   CP CG  NG+ K+A   L I+H++     +
Sbjct: 149  RNPRLEITQRRLLYKKLTEKCK----RCRTCPHCGDYNGVTKRAGQTLKIVHEKYSKNPA 204

Query: 57   KVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLI 116
             + E ++EF +A+ + ++ +A++      LNP+ VL + +R+T  DCE+L +++RPE L+
Sbjct: 205  LLEEFMKEFETALKYNEQLRASLPKVQDDLNPIRVLGILQRVTSADCELLDIADRPEHLL 264

Query: 117  ITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWE 175
            +T++ VPP  IRPSV MDG S SNE+DIT +L +II+ N  L+Q L +  +    +  W+
Sbjct: 265  LTHLPVPPCCIRPSVEMDGVSGSNEDDITMKLIQIIEVNNVLRQGLEKGLAVNNMMENWD 324

Query: 176  TLQVEVAQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVIS 234
             LQ++ A YINS++ G+    Q   +PL GFVQRLKGKQGRFRGNLSGKRV+++ RTVIS
Sbjct: 325  FLQIQCAMYINSELPGLSLQYQGPGKPLRGFVQRLKGKQGRFRGNLSGKRVDFSARTVIS 384

Query: 235  PDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARV 294
            PDPNL+I EV +PI +A+ +TYPE V+ HN+  LR+ ++NG  K+PGA  +++  G  + 
Sbjct: 385  PDPNLRIDEVGVPIHIAKTMTYPEVVNKHNMVMLRERVRNGMAKHPGANFVKFASGGMQY 444

Query: 295  LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNES 354
            L    R ++A ELK G IV+RHL DGD++LFNRQPSLH+MSIM H+ARIM  RTLRFNE 
Sbjct: 445  LKYGDRRKIASELKFGDIVERHLHDGDILLFNRQPSLHKMSIMAHKARIMECRTLRFNEC 504

Query: 355  VCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFL 414
            VC PYNADFDGDEMN+H PQTEEAR EA+ LMGVQ+NLCTPKNGEIL+A+TQDFLT++FL
Sbjct: 505  VCTPYNADFDGDEMNIHCPQTEEARAEAMQLMGVQHNLCTPKNGEILIAATQDFLTAAFL 564

Query: 415  ITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVY 474
            +T KD F+DR+ F  +  YMGD +  VDLPTPAILKP+ELWTGKQ+FSVLIRP A+  +Y
Sbjct: 565  LTIKDAFFDRSQFGSLVAYMGDALLSVDLPTPAILKPIELWTGKQVFSVLIRPKASDHIY 624

Query: 475  VNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGL 534
            VNL V EK Y+ K            +TMCP+DG+V  +NSE+ISGQLGKATLG+GNK GL
Sbjct: 625  VNLEVAEKLYNKK-----------DKTMCPDDGYVCIQNSEIISGQLGKATLGSGNKSGL 673

Query: 535  YSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEV 594
            + VL  +YGA A +  MNRLAKLSARW+G  GFSIGIDDV P  ELS +KG+ I + Y  
Sbjct: 674  FYVLNIEYGAEAAANAMNRLAKLSARWLGTRGFSIGIDDVSPAAELSAEKGRRIEDGYRT 733

Query: 595  CNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQC 654
            C+ +I  Y +G L L+ GC+A +TLEA +  +L+ +RE AG AC+ +LP RN+PLIM+ C
Sbjct: 734  CDERIASYEKGTLPLQAGCNAEETLEAEVLGVLSAVREAAGNACLKALPRRNAPLIMALC 793

Query: 655  GSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLS 714
            GSKGS INISQM+ACVGQQ+VGG R P+GF +RSLPHF R  K PAAKGFVANSF+SG+ 
Sbjct: 794  GSKGSTINISQMIACVGQQAVGGSRPPDGFAERSLPHFRRGEKTPAAKGFVANSFFSGMR 853

Query: 715  ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYG 774
             TEFFFHTM GREGLVDTAVKTA+TGYMSRRL+KALEDLS+QYD +VRN+ G IVQ  YG
Sbjct: 854  PTEFFFHTMAGREGLVDTAVKTAETGYMSRRLMKALEDLSLQYDGTVRNSMGGIVQLRYG 913

Query: 775  DDGMDPANMEGKSGEPLNFDRLLMKVKATC-----PPAGQRYLSP--------QQVSEIV 821
            DDGM+P  ME +  +P+ F R LM V+        PPA +  L           ++  + 
Sbjct: 914  DDGMEPTMMESEDAQPIEFKRCLMNVRGLNSARGEPPATRSALDAALDQFKRNNRIINVD 973

Query: 822  EKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGI 881
            E+  +A  +E    A ++ L  F+E                    ++ I+ EV   + G+
Sbjct: 974  EEGESAETRELVYSAGISQL--FYENM------------------RTFIINEVESPSDGV 1013

Query: 882  --TEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNIT 939
              +++Q++ F+  C  +Y  KR+E GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMNIT
Sbjct: 1014 YMSDRQMKAFLDACARKYTEKRIEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNIT 1073

Query: 940  QGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSR 999
             GVPRIKEIIN +K ISTPIITA L  + +  AARVVKGR+EKT LG++   I IV+   
Sbjct: 1074 LGVPRIKEIINASKNISTPIITASLMSDRDVKAARVVKGRVEKTTLGEICSEINIVVRPH 1133

Query: 1000 LASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD--- 1056
               + + LDME I    L +    V+ +++  PK+KLK QH+ +     L + P  +   
Sbjct: 1134 DLYLELMLDMEAINQLQLDVTIHSVRLAVLGAPKLKLKPQHVLIAGENILHVLPSEEALI 1193

Query: 1057 KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQ 1116
            + +  F L  ++  +P VIV+GI +V R VI +K               Y L+VEG  LQ
Sbjct: 1194 EKRALFTLQHMRLAIPAVIVQGIPSVGRAVINDK-----------GDGTYNLIVEGVNLQ 1242

Query: 1117 AVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADL 1176
            +VMG EGI G +T++NH+ E ++TLGIEAAR CII+EI+ TM AHGMSID RH MLLAD+
Sbjct: 1243 SVMGIEGIKGTETRTNHVMECERTLGIEAARACIIEEIDSTMGAHGMSIDNRHSMLLADV 1302

Query: 1177 MTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPM 1236
            MT++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+A+++GR D I+GVSECIIMGIPM
Sbjct: 1303 MTYKGEVLGITRFGMAKMKDSVLMLASFEKTTDHLFDAALHGRTDYIDGVSECIIMGIPM 1362

Query: 1237 PLGTGILKIRQR 1248
            P+GTG+ +++ R
Sbjct: 1363 PIGTGMFRLQHR 1374


>gi|302840215|ref|XP_002951663.1| hypothetical protein VOLCADRAFT_81566 [Volvox carteri f. nagariensis]
 gi|300262911|gb|EFJ47114.1| hypothetical protein VOLCADRAFT_81566 [Volvox carteri f. nagariensis]
          Length = 1365

 Score = 1334 bits (3452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 701/1279 (54%), Positives = 874/1279 (68%), Gaps = 68/1279 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             RNP++E +++  + + +  +C     +   CP CG  N  VKKA  VL IIH+R    E
Sbjct: 85   FRNPRVERVQRVFMFRKLNDRCK----RQKNCPHCGEYNATVKKATGVLKIIHERYAKNE 140

Query: 61   SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNI 120
            SL   A AI +  + K  ++     L+P+ V  LF+ + D D ++L +  RPE L+ T++
Sbjct: 141  SL---ADAIKYNDQLKPHLHRMADDLHPLRVRALFENIPDEDLDLLDIQGRPEDLVTTHL 197

Query: 121  AVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
            AVPP+AIRPSV MDGS SNE+DIT +L +II  N  L+Q L +       +  W+ LQV+
Sbjct: 198  AVPPVAIRPSVEMDGS-SNEDDITMKLMQIIDVNNVLRQGLEKGLPINNLMENWDFLQVQ 256

Query: 181  VAQYINSDVRGVPFSMQV-ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
             A  INSD+ G+P  MQ+  RPL GFVQRLKGKQGRFRGNLSGKRV+++GRTVISPDPNL
Sbjct: 257  CAMLINSDLPGLPAQMQMPGRPLRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNL 316

Query: 240  KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF 299
            +I +V +P  MA +LTYPERV+ HNI+KLRQ + NG   +PGA  +  PDG  + L    
Sbjct: 317  QIFQVCVPQHMAVVLTYPERVTRHNIDKLRQRVLNGISTWPGANFVVTPDGDKQFLKFGD 376

Query: 300  RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
            R ++A ELK G IV+RHLEDGDVVLFNRQPSLHR+SIM  RA++  WRTLRFNE  C+P+
Sbjct: 377  RRKIAAELKVGHIVERHLEDGDVVLFNRQPSLHRISIMAFRAKVRTWRTLRFNECACSPF 436

Query: 360  NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
            NADFDGDEMN+H+PQTEEAR EA  LMG  NNL TPKNG+I++A+TQDFLT +FL+T KD
Sbjct: 437  NADFDGDEMNLHLPQTEEARAEAFNLMGSVNNLATPKNGDIMIAATQDFLTCAFLLTSKD 496

Query: 420  TFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTV 479
             FY R+ F  +   M DG++ +DLPTPA+LKP+ELWTGKQLFS L+RP A +RV+VNL +
Sbjct: 497  RFYTRSEFCGLLATMADGLEHIDLPTPALLKPLELWTGKQLFSCLVRPAAAVRVFVNLEM 556

Query: 480  KEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLL 539
             EK YS K            E MCPNDG+V FRNSELISG+LGK  LG  +K GL+  L 
Sbjct: 557  AEKIYSKK-----------GEHMCPNDGWVCFRNSELISGRLGKVVLG-ASKSGLFGTLN 604

Query: 540  RDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKI 599
             DY  +A +  M+RLAK++AR +GN GFSIGIDDV P   L   K   + + Y  C   I
Sbjct: 605  CDYSPYAAASAMSRLAKMAARHMGNRGFSIGIDDVTPAPVLERAKADTVEKGYTDCRDFI 664

Query: 600  KEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGS 659
              + +G+LQL+PGC+A Q+LEA +T +LN IRE AGK CM +L + NSPLIMSQCGSKGS
Sbjct: 665  AAFKKGELQLQPGCNAEQSLEANMTGVLNNIREVAGKVCMDTLDYHNSPLIMSQCGSKGS 724

Query: 660  PINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFF 719
            PINI+QMVACVGQQSVGG+R  NGF +R+LPH+PR  K PA KGFVANSFYSGLSATEF+
Sbjct: 725  PINIAQMVACVGQQSVGGKRCFNGFRERTLPHYPRGDKTPAGKGFVANSFYSGLSATEFW 784

Query: 720  FHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
            FHTMGGREGLVDTAVKTA+TGYMSRRL+KALEDL   YD++VRNA G IVQ LYG+DGMD
Sbjct: 785  FHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLYAHYDSTVRNASGGIVQLLYGEDGMD 844

Query: 780  PANMEGKSGEPLNFDRLLMKVKATCP--PAGQRYLSPQQVSEIVEKQLAAYGKESCSEAF 837
            P  MEGK G+PL+F RL+ KV+AT    P           +      +   G   CS+AF
Sbjct: 845  PVAMEGKEGKPLDFARLMAKVRATTRRVPLSAGGAHEAAAAPAAASSM-DLGTPWCSDAF 903

Query: 838  LNSLRKFFEGQ---QDKLDKKIKFVED-IGWDDKSQILEEVTHKTSGITEKQLEVFIQTC 893
               LR F   Q        K++   ED  G DD +    E      G+T  QLE F+  C
Sbjct: 904  RKGLRDFLASQLAGYRNARKRLGLAEDERGADDAA----EYAAGQDGLTPSQLEAFVGLC 959

Query: 894  FSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
             ++Y  KR++ G+ +GA+GAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN AK
Sbjct: 960  LTKYATKRIDPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK 1019

Query: 954  RISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVM----------------- 996
             ISTPI+   L  + +  AAR+VKGR+EKT LGQVA+ IKIV+                 
Sbjct: 1020 NISTPIMKVALAVDGDVKAARLVKGRLEKTTLGQVARHIKIVLKPGRGGGDAMTMPGSGG 1079

Query: 997  ----TSRL---ASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKL 1049
                  RL   A I I LDM +I    L I+   VK SI+  PK+KLK+QH++ +   K+
Sbjct: 1080 AYGGGPRLHGEAVISIRLDMASIDALQLDIDGHTVKYSILAHPKLKLKEQHVRAVAQDKV 1139

Query: 1050 EIFP-PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRL 1108
             ++P    +  + F L  L   LP VIV GI TVER VI          K+ G+  KY L
Sbjct: 1140 LVYPQDASRQGLLFCLEGLLGKLPGVIVMGIPTVERAVI---------TKDKGD--KYSL 1188

Query: 1109 LVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKR 1168
            LVEGT +QAVMG  G+ G +T +NH+ E+++ +GIEAAR  I+ EI  TM +HGMSID R
Sbjct: 1189 LVEGTNVQAVMGTLGVLGTQTTTNHVAEIEKFMGIEAARSAIMSEIKYTMGSHGMSIDDR 1248

Query: 1169 HMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSE 1228
            H+MLLAD M+++GEVLGITRFGI KM  SVL  ASFEKTADHLF+A+++GR D + GVSE
Sbjct: 1249 HIMLLADCMSYKGEVLGITRFGIAKMKDSVLHTASFEKTADHLFDAAIHGRMDDVVGVSE 1308

Query: 1229 CIIMGIPMPLGTGILKIRQ 1247
             IIMGIPMP GTG+ KIR 
Sbjct: 1309 SIIMGIPMPTGTGLFKIRH 1327


>gi|308800888|ref|XP_003075225.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
 gi|116061779|emb|CAL52497.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
          Length = 1406

 Score = 1328 bits (3436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 669/1259 (53%), Positives = 883/1259 (70%), Gaps = 47/1259 (3%)

Query: 2    RNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR-----S 56
            RNP++E  ++  L K + +KC     +   CP CG  NG+ K+A   L I+H++     +
Sbjct: 150  RNPRLELTQRRLLYKKLTEKCK----RCRICPHCGDYNGVTKRAGQTLKIVHEKYSKNPA 205

Query: 57   KVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLI 116
             + E L+EF +A+ + ++ +A++      LNP+ VL + +R+TD DCE+L +++RPE L+
Sbjct: 206  LLEEFLKEFETALKYNEQLRASLPKVQDDLNPIRVLSILQRITDQDCELLDIADRPEHLL 265

Query: 117  ITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWE 175
            +T++ VPP  IRPSV MDG S SNE+DIT +L +II+ N  L+Q L +  +    +  W+
Sbjct: 266  LTHLPVPPCCIRPSVEMDGVSGSNEDDITMKLIQIIEVNNVLRQGLEKGLTINNLMENWD 325

Query: 176  TLQVEVAQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVIS 234
             LQ++ A YINS++ G+    Q   +PL GFVQRLKGKQGRFRGNLSGKRV+++ RTVIS
Sbjct: 326  FLQIQCAMYINSELPGLSLQYQGPGKPLRGFVQRLKGKQGRFRGNLSGKRVDFSARTVIS 385

Query: 235  PDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARV 294
            PDPNL I EV IPI +A+ +TYPE V+ HNI  LR+ ++NG  ++PGA  +++  G  + 
Sbjct: 386  PDPNLGIDEVGIPIYIAKTMTYPEVVNRHNIAMLRERVRNGMAEHPGANFVKFASGGMQY 445

Query: 295  LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNES 354
            L    R ++A EL+ G IV+RHL DGD++LFNRQPSLH+MSIM H+AR+MP RTLR NE 
Sbjct: 446  LKYGDRRKIASELRFGDIVERHLHDGDILLFNRQPSLHKMSIMAHKARVMPCRTLRLNEC 505

Query: 355  VCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFL 414
            VC PYNADFDGDEMN+H PQTEEAR EA+ LMGV +NLCTPKNGEILVA+TQDFLT++FL
Sbjct: 506  VCTPYNADFDGDEMNIHCPQTEEARAEAMQLMGVHHNLCTPKNGEILVAATQDFLTAAFL 565

Query: 415  ITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVY 474
            +T KD F+DR+    +  YMGD +  VDLPTPAI+KP+E+WTGKQ+F +LIRP A+ +++
Sbjct: 566  LTAKDVFFDRSQVGQLVAYMGDALLSVDLPTPAIVKPIEMWTGKQIFGMLIRPKASDQIF 625

Query: 475  VNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGL 534
            VNL V EK Y+ K            +TMCP+DG+V  +NSE+++G+LGKATLG+GNK+GL
Sbjct: 626  VNLEVAEKLYNKK-----------DKTMCPDDGYVCIQNSEIMAGRLGKATLGSGNKNGL 674

Query: 535  YSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEV 594
            + VL  +YG  A +  MNRLAKLSARW+G  GFSIGIDDV P  EL  +K + I + Y  
Sbjct: 675  FYVLNIEYGPVAAADAMNRLAKLSARWLGTRGFSIGIDDVSPAAELEAEKQRRIEDGYAT 734

Query: 595  CNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQC 654
            C+ +I  Y +G L L+ GC+A +TLEA +  +L+ +RE AG AC+ +LP  N+PLIM+ C
Sbjct: 735  CDQRIASYEKGTLPLQAGCNAEETLEAEVLGVLSSVREAAGNACLQALPRHNAPLIMALC 794

Query: 655  GSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLS 714
            GSKGS INISQMVACVGQQ+V G R P+GF  RSLPHF R  K PAAKGFVANSFYSG+ 
Sbjct: 795  GSKGSTINISQMVACVGQQAVSGSRPPDGFAHRSLPHFKRGEKTPAAKGFVANSFYSGMR 854

Query: 715  ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYG 774
             TEFFFHTM GREGLVDTAVKTA+TGYMSRRL+KALEDLS+ YD +VRN+ G IVQ  YG
Sbjct: 855  PTEFFFHTMAGREGLVDTAVKTAETGYMSRRLMKALEDLSLSYDGTVRNSMGGIVQLRYG 914

Query: 775  DDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCS 834
            DDGM+P  ME ++ +P+ F R LM VK   P  G+  ++      ++   LA + KE+  
Sbjct: 915  DDGMEPTLMESENAQPIEFKRCLMNVKGLHPARGEAPVT----KAVLHAALAKFKKEN-- 968

Query: 835  EAFLNSLRKFFEGQQDKLDKKIK--FVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQT 892
               LN+  +  +GQ+      I   F   +     S+I E  +   + I+E QL  F+  
Sbjct: 969  -KLLNTGDE-ADGQELVYGGGISELFFRQMSEFITSEI-ESPSDGGAVISESQLNTFLDV 1025

Query: 893  CFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGA 952
            C  +Y  KR+E GTA+GA+GAQSIGEPGTQMTLKTFHFAGVASMNIT GVPRIKEIIN +
Sbjct: 1026 CMQKYNAKRIEPGTAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINAS 1085

Query: 953  KRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            K ISTPII+A L  + +  AARVVKGR+EKT LG++     IV+ S    + + LD+E I
Sbjct: 1086 KSISTPIISASLMSDRDVKAARVVKGRVEKTTLGEICSDAGIVVRSHEVYLELVLDLEAI 1145

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD---KSKIHFELYSLKN 1069
                L +     + +++  PK+KLK QH+ +     L + P  +   + K  F L  ++ 
Sbjct: 1146 NQLQLDVTIHTARTAVLAAPKLKLKPQHVLIAGPNVLHVLPTEESLVEGKALFALQHMRL 1205

Query: 1070 VLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKT 1129
             +P VIV+GI +V R VI +K               Y LLVEG  LQAVMG +G+ G +T
Sbjct: 1206 AIPGVIVQGIPSVGRAVINDK-----------GDGTYNLLVEGINLQAVMGIDGVKGIET 1254

Query: 1130 KSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRF 1189
             +N++ E ++TLGIEAAR CII EI++TM+AHGMSID RH MLLAD+MT++GEVLGITRF
Sbjct: 1255 TTNNVMECERTLGIEAARACIIKEIDDTMRAHGMSIDNRHSMLLADVMTYKGEVLGITRF 1314

Query: 1190 GIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            G+ KM  SVLMLASFEKT DHLF+A+++GR D I+GVSECIIMGIPMP+GTG+ +++ R
Sbjct: 1315 GMAKMKDSVLMLASFEKTTDHLFDAALHGRTDYIDGVSECIIMGIPMPIGTGMFRLQHR 1373


>gi|281204162|gb|EFA78358.1| RNA polymerase III [Polysphondylium pallidum PN500]
          Length = 1393

 Score = 1315 bits (3403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 676/1280 (52%), Positives = 872/1280 (68%), Gaps = 67/1280 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            +RN K++ L++  L+K I  +C     K   CPRC  + G VKK V+ L ++H+R K   
Sbjct: 128  IRNRKLDVLQRRALLKKIYLECR----KKKFCPRCNMVQGTVKK-VSALKLVHERYKGKN 182

Query: 58   ---VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---R 111
               + + L  F  AI +  E K  +  A   LNP+  L LFKR+T  D E+L ++    R
Sbjct: 183  DEYIRDFLSNFDEAIKYNSEMKGHIKKAQEDLNPLVALNLFKRITSQDTELLDMNPELGR 242

Query: 112  PEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
            PE+LI+T+I VPP+ IRPSV MDG S SNE+D+T +L  I+  N +++   V+       
Sbjct: 243  PERLILTHILVPPVCIRPSVPMDGGSGSNEDDLTMKLSDILHINENIRTN-VDKMEMVAI 301

Query: 171  LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
            +  W+ LQ   A YINS++ G+P  M+  +P+ G  QRLKGK GRFRGNLSGKRV+++GR
Sbjct: 302  MEDWDYLQASCAIYINSELPGLPLQMKPQKPIRGLSQRLKGKTGRFRGNLSGKRVDFSGR 361

Query: 231  TVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDG 290
            TVISPDPNL I EVA+P  +A  +TYPERV+++N+ +L++ + NGPDK+PGA  I YPDG
Sbjct: 362  TVISPDPNLNIDEVAVPHLIALTMTYPERVAEYNLTRLQKYVINGPDKHPGANYIIYPDG 421

Query: 291  TARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 350
              + L    R +LA ELK G IV+RH+ DGDVVLFNRQPSLH++SIM H+AR+MPWRTLR
Sbjct: 422  EKKWLKYGNREKLAAELKPGDIVERHIIDGDVVLFNRQPSLHKLSIMAHKARVMPWRTLR 481

Query: 351  FNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLT 410
            FNE VC PYNADFDGDEMN+H+PQTEEAR EAL+LMGV NNL TP+NGE LVA+TQDFLT
Sbjct: 482  FNECVCTPYNADFDGDEMNLHLPQTEEARAEALILMGVTNNLITPRNGEPLVAATQDFLT 541

Query: 411  SSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHAN 470
            SS+LI+R+D FYDR  F+ MC +  D  + +D+P P ILKP+ELWTGKQLF VL+RP   
Sbjct: 542  SSYLISRRDAFYDRTRFAYMCTHFADAYEHIDMPPPTILKPIELWTGKQLFEVLLRPSVK 601

Query: 471  MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGN 530
              V VN   K +TY   L             MCP DG+VYFRNSEL+ G + K+ +G GN
Sbjct: 602  SHVLVNFETKSRTYEKNLY------------MCPKDGYVYFRNSELMCGSIDKSIIGGGN 649

Query: 531  KDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISE 590
            K+ L+ +L+RD+     +  M RLAKL AR++G+ GFSIGI DV+P  EL+ KK  +I+ 
Sbjct: 650  KNSLFHILMRDFTPAIAANAMTRLAKLCARFLGDQGFSIGIPDVKPSFELNAKKDAIIAV 709

Query: 591  NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLI 650
             +  C+  +  Y  GKL  + GC   QTLE+ +  +L+ IR++ GK C+  LP  NSPLI
Sbjct: 710  GHGKCDQFLTAYKAGKLPAQSGCTVEQTLESKMNSVLSDIRDECGKLCIKELPHYNSPLI 769

Query: 651  MSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFY 710
            M+ CGSKGS INI+QM+ACVGQQ+V G R PNGF +R+ PHFP  AKEP AKGFVANSFY
Sbjct: 770  MALCGSKGSNINIAQMIACVGQQTVNGTRIPNGFTNRTTPHFPINAKEPPAKGFVANSFY 829

Query: 711  SGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQ 770
            +G+  TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+KALEDLS QYD +VR++ G IVQ
Sbjct: 830  TGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTQYDYTVRDSIGGIVQ 889

Query: 771  FLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGK 830
            F+YGDDG+DPA ME K   P++F R +M VK+T     +  L P ++  ++E QL +   
Sbjct: 890  FIYGDDGLDPAGMEAKE-RPVDFARAMMSVKSTKQCRNEESLRPYKIKLLLESQLKSSKF 948

Query: 831  ESCSEAFLNSLRKFFEG---QQDKLDKKIKFVEDIGWD----DKSQIL------------ 871
              C++ F + +R FF G   Q+  +++ +K  +         D  Q +            
Sbjct: 949  AQCTDLFKDEIRSFFYGKPKQEGYIEELLKLRKSFNLPSYEVDGDQTMTSVEDEPPARLT 1008

Query: 872  ----EEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKT 927
                E +  +   IT+ QLE+F++ C  +Y   R+E GTA+GA+GAQSIGEPGTQMTLKT
Sbjct: 1009 PDQFEHLVDQIHRITKSQLELFLEICLDKYSRARIEPGTAVGAVGAQSIGEPGTQMTLKT 1068

Query: 928  FHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQ 987
            FHFAGVASMN+T GVPRIKEIIN AK ISTPIITA L C+D+  +AR+V GRIEK  LGQ
Sbjct: 1069 FHFAGVASMNVTLGVPRIKEIINAAKTISTPIITATLNCDDDIRSARIVAGRIEKVTLGQ 1128

Query: 988  VAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR 1047
            VA  IK V  +    I I +D + I    L I+ + ++ +I+ T  +KLK++H+      
Sbjct: 1129 VAIFIKEVFRNAGCYITIKIDKKFIDSQQLDIDPESIRRAIIGTKILKLKEKHVIASGDD 1188

Query: 1048 KLEIFPPVDKSK--IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKK 1105
            K+ +  PVD S+  + + L  LKN LP VIV+GI TV RVVI EK         NG   K
Sbjct: 1189 KIRV-EPVDTSREMMLYNLQFLKNNLPNVIVRGISTVNRVVIDEK---------NG---K 1235

Query: 1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
            Y+LL+EG  L  VM   GI+G  T SNH+ EV++ LGIEA R  IIDEI   M  HGMSI
Sbjct: 1236 YKLLIEGYDLLHVMTTAGINGTHTNSNHMMEVEKYLGIEAVRQTIIDEIQMIMINHGMSI 1295

Query: 1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
            D RH+MLLADLM+F+GE+LGITRFGI KM +SVLMLASFEKT DHLF+A+V+ R D I G
Sbjct: 1296 DSRHVMLLADLMSFKGEILGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHRRQDDIVG 1355

Query: 1226 VSECIIMGIPMPLGTGILKI 1245
            VSECIIMGIP+PLGTG+ K+
Sbjct: 1356 VSECIIMGIPVPLGTGLFKL 1375


>gi|412989108|emb|CCO15699.1| DNA-directed RNA polymerase III largest subunit [Bathycoccus
            prasinos]
          Length = 1499

 Score = 1311 bits (3394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 667/1296 (51%), Positives = 886/1296 (68%), Gaps = 90/1296 (6%)

Query: 14   LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQE-----FASA 68
            + K +++KC     +   C +C  +NG VK+A   L IIH++    ++ QE     F  A
Sbjct: 168  MFKKLLEKCK----RTKVCFQCEAVNGPVKRAGQNLKIIHEKYTSNKAEQEKRERAFEEA 223

Query: 69   ITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIR 128
            + H  + +  ++ A   LNP+ VL +FKR+ + D  +L L++RPE ++IT+++VPP  IR
Sbjct: 224  MKHNDQLRQHISRAQDDLNPIRVLQIFKRIAEKDLSLLDLAQRPENMVITHLSVPPCCIR 283

Query: 129  PSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINS 187
            PSV +DG + S E+DI+ +L +II+ N  L+Q L    +    +  WE LQ++ A YINS
Sbjct: 284  PSVELDGQAGSTEDDISMKLVQIIEINNVLRQGLERGLAVTNMMENWEFLQIQFAMYINS 343

Query: 188  DVRGVPFSMQV-ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAI 246
            ++ G+    Q   +PL GFVQRLKGKQGRFRGNLSGKRV++T RTVISPDPNL+I EV +
Sbjct: 344  ELPGISSQYQSPGKPLRGFVQRLKGKQGRFRGNLSGKRVDFTARTVISPDPNLRIDEVGL 403

Query: 247  PIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYP-DGTARVLYGKF--RNQL 303
            P  +A  LTYPE V+++NI +LRQ I NG  K+PGA  ++    G     Y K+  RN++
Sbjct: 404  PQHIAMQLTYPETVNNNNIAELRQLIINGEGKWPGANFVKSKQSGHFSAQYLKYGDRNRV 463

Query: 304  AVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADF 363
            A +LK G IV+RH+ DGD+VLFNRQPSLH+MSIM HRA++MPWRTLRFNE VC PYNADF
Sbjct: 464  AKKLKPGDIVERHVRDGDIVLFNRQPSLHKMSIMAHRAKVMPWRTLRFNECVCAPYNADF 523

Query: 364  DGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYD 423
            DGDEMN+H+PQTEEAR EA+ LMGV  NLCTPKNGEIL+A+TQDFLT+SFL+T K+ F+D
Sbjct: 524  DGDEMNIHLPQTEEARAEAISLMGVTQNLCTPKNGEILIAATQDFLTASFLLTSKEVFFD 583

Query: 424  RAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKT 483
            R+ F  +  YM D ++ +DLP+PAI+KP+E+WTGKQ+FSVLIRP    +++VNL V EK 
Sbjct: 584  RSQFGQLAAYMSDALESIDLPSPAIVKPIEMWTGKQIFSVLIRPRMRDQIFVNLEVSEKA 643

Query: 484  YSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYG 543
            Y+              + MC NDG+V  +NSE+ISGQLGKATLG GNK GL+ VL  DYG
Sbjct: 644  YTKV-----------NQQMCSNDGYVCIQNSEIISGQLGKATLGGGNKTGLFYVLNSDYG 692

Query: 544  AHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYN 603
            A   +  MNRLAKL+ARWIG  GFSIGIDDV+P  EL  +K   +   Y  C+ +I  + 
Sbjct: 693  ADVAANAMNRLAKLAARWIGIRGFSIGIDDVKPSPELEREKQNRVDSGYAKCDERIASFE 752

Query: 604  EGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINI 663
            +G L L+PGC+A QTLEA +  +L+ +RE AG AC+ +LP  NSPL+M+ CGSKGS INI
Sbjct: 753  KGTLDLQPGCNAEQTLEAEVLGVLSAVREAAGNACLDALPKLNSPLVMALCGSKGSTINI 812

Query: 664  SQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTM 723
            SQM+ACVGQQ+VGG R P+GF +RSLPHF R  K PAAKGFVANSFYSGL  TEFFFHTM
Sbjct: 813  SQMMACVGQQAVGGTRPPDGFFERSLPHFKRGEKTPAAKGFVANSFYSGLLPTEFFFHTM 872

Query: 724  GGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANM 783
             GREGLVDTAVKTA+TGYMSRRL+KALEDLS+ YD +VRN+ G IVQ  YGDDGM+P  M
Sbjct: 873  AGREGLVDTAVKTAETGYMSRRLMKALEDLSLGYDGTVRNSSGDIVQLEYGDDGMEPTLM 932

Query: 784  EGKSGEPLNFDRLLMKVKATCPPAGQRY-------------------------------- 811
            EG  GEP+  +RL+++ K   P     Y                                
Sbjct: 933  EGSEGEPVELERLMLRAKGLIPQRKHPYEENPTQTPPTTKNGRKNGKNGVHATTTPAVKL 992

Query: 812  -------LSPQQVSEIVEKQLAAYGKESCSEAFLNS-LRKFFEGQQDKLDKKIK-FVEDI 862
                   L+ +  + I+EK+   +G++   E   +  LR   +  +DK+  + K  V D 
Sbjct: 993  EGKDKLILTTEDANVILEKR--GFGEKDLPEDDEDERLRAGLQYSKDKISYRFKQSVRD- 1049

Query: 863  GWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQ 922
             +    ++LE+       ++ ++++ F++ C  +Y+ KR+E GTA+GA+GAQSIGEPGTQ
Sbjct: 1050 -YISSPKVLEQ------KLSTRRVDAFLKACVQKYKSKRIEPGTAVGAVGAQSIGEPGTQ 1102

Query: 923  MTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEK 982
            MTLKTFHFAGVASMNIT GVPRIKEIIN  K ISTPIITA+L  + +  AAR+VKGR+EK
Sbjct: 1103 MTLKTFHFAGVASMNITLGVPRIKEIINATKNISTPIITAKLISDKDVKAARLVKGRMEK 1162

Query: 983  TLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIK 1042
            T+LG++ ++I +V+    A +   LD + I    L + A+  +E+I+  PK+KLK  ++ 
Sbjct: 1163 TMLGEICETISVVLRPSGAYLEFVLDEKAIASLQLDVTAESAREAILAAPKLKLKDHNVV 1222

Query: 1043 VLDFRKLEIFPPVDKSK---------IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKE 1093
            +   R + + PP +K+          I   L SL+  +P VIV+G+ +V R VI      
Sbjct: 1223 LAGNRAIHVIPPDEKASSKDPTGKRAIINVLQSLRTAVPKVIVRGLSSVTRAVI-----N 1277

Query: 1094 KRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDE 1153
            K  +    +K  + L+VEGT L  VM  +G+ G +T +NHI E +++LGIEAAR C+I E
Sbjct: 1278 KGGMSSKDDKDSFNLIVEGTNLLDVMSIDGVVGEETTTNHIMEAERSLGIEAARSCVIKE 1337

Query: 1154 INETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFN 1213
            IN+TMKAHGMSID RH MLLAD+MT++GEVLGITRFG+ KM +SVLMLASFEKT DHLF 
Sbjct: 1338 INDTMKAHGMSIDSRHSMLLADVMTYKGEVLGITRFGMAKMKESVLMLASFEKTTDHLFE 1397

Query: 1214 ASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRD 1249
            A++ GR D+I+GVSECIIMG+PMP+GTG+ K++QR+
Sbjct: 1398 AALRGRTDQIDGVSECIIMGVPMPIGTGMFKLKQRN 1433


>gi|384246317|gb|EIE19808.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Coccomyxa subellipsoidea C-169]
          Length = 1328

 Score = 1286 bits (3328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 677/1274 (53%), Positives = 834/1274 (65%), Gaps = 96/1274 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----- 55
             RNP++E + +  L K + +KC     +  +C  CG  NG+V+     L + HD+     
Sbjct: 106  FRNPRLERVARAGLFKRVAEKCK----RVRQCTHCGSTNGVVRHVPGGLKLFHDKYARNI 161

Query: 56   SKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKL 115
             +  E   EF  A+ H ++ K  ++     LNP+ VL LF  +TD  CE+L L+ RPE L
Sbjct: 162  KEHEEYAAEFDEAVLHNEQMKHCLHKVGDDLNPIRVLALFSAITDEACELLDLAGRPEHL 221

Query: 116  IITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGW 174
            I+T++ VPP+ IRPSV MD G  +NE+DIT +L  II TN  L++ L     A K +  W
Sbjct: 222  IMTHLPVPPVCIRPSVEMDSGGGTNEDDITMKLMNIIDTNNGLREALHLGLQADKLVDSW 281

Query: 175  ETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVIS 234
            + LQV  A                     GFVQRLKGKQGRFRGNLSGKRV+++GRTVIS
Sbjct: 282  DFLQVNCAM--------------------GFVQRLKGKQGRFRGNLSGKRVDFSGRTVIS 321

Query: 235  PDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYP-DGTAR 293
            PDPNL I EV IP+ +A ILT+PERV+ HNI +L++CI NGP  +PGA  +    DG  +
Sbjct: 322  PDPNLAINEVGIPMHVAVILTFPERVTSHNISRLQKCIMNGPGVWPGANFVLVAKDGARK 381

Query: 294  VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNE 353
             L    R + A ELK G +V+RHL DGD+VLFNRQPSLHRMSIM HRARIMPWRT RFNE
Sbjct: 382  SLKYGDRRRTAAELKIGDVVERHLRDGDIVLFNRQPSLHRMSIMAHRARIMPWRTFRFNE 441

Query: 354  SVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSF 413
             VCNPYNADFDGDEMN+HVPQTEEAR EA  LMGV  NLCTPK+GEIL+A+TQDFLTS+F
Sbjct: 442  CVCNPYNADFDGDEMNVHVPQTEEARAEASELMGVMRNLCTPKSGEILIAATQDFLTSAF 501

Query: 414  LITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRV 473
            L+T KD FY R   + + C+MGDGMD VDLP PA+LKP+ELWTGKQLFS+LIRP++  R+
Sbjct: 502  LLTSKDRFYSRTQVAQLACFMGDGMDAVDLPQPALLKPLELWTGKQLFSMLIRPNSLTRL 561

Query: 474  YVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDG 533
             VNL   EKTY    ++  G        MCP DGFV F+NS L+ G+LGK TLG GNK G
Sbjct: 562  LVNLETAEKTY----LKGSG-------VMCPRDGFVVFQNSTLMCGRLGKVTLGGGNKSG 610

Query: 534  LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYE 593
            L+ VL  D+ + A    M RL+KLSAR+IG HGFSIG+DDV P   L  +K   I  +Y+
Sbjct: 611  LFQVLANDFSSEAAGAVMRRLSKLSARFIGEHGFSIGVDDVTPALRLLQEKQATIDSSYQ 670

Query: 594  VCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQ 653
             C  KI EY  GKL L  GC+  Q+LE  +  +LNRIR  A   CM +L   NSPLIMSQ
Sbjct: 671  ECQDKIAEYKSGKLALLAGCNEEQSLEQSVMGVLNRIRNTASDVCMKTLQHHNSPLIMSQ 730

Query: 654  CGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGL 713
            CGSKGSPINI+QMVACVGQQSV GRR P+GF DR+LPHFP   + P  KGFVA SFYSGL
Sbjct: 731  CGSKGSPINIAQMVACVGQQSVSGRRCPDGFKDRTLPHFPPGDRTPEGKGFVAASFYSGL 790

Query: 714  SATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLY 773
            S TEFFFHTM GREGLVDTAVKTA+TGYMSRRL+K+LEDL   YD++VRN+ G IVQ  Y
Sbjct: 791  SPTEFFFHTMAGREGLVDTAVKTAETGYMSRRLMKSLEDLYTHYDSTVRNSAGGIVQLTY 850

Query: 774  GDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLS-----------PQQVSEIVE 822
            GDDG+DP  ME + G+P++  R L  V AT P   Q   +           P  +  ++E
Sbjct: 851  GDDGLDPVAMEAQEGKPVDLTRSLSVVHATTPRRPQLPENAMEDDDWDVPLPTDMEALIE 910

Query: 823  KQLA----AYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKT 878
              L     A G   CS AF   L+ F +  Q K  + ++    +  DD+     E     
Sbjct: 911  GLLQENDLAQGSVFCSAAFQADLQVFLQ-IQVKSWRAVRQKLSLPMDDRGPRAPEAAAAA 969

Query: 879  SGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNI 938
              IT  +L  F++ C  RY  KR++ G+ +GA GAQSIGEPGTQMTLKTFHFAGVASMN+
Sbjct: 970  QSITAAELREFLRLCARRYEAKRMDPGSTVGAFGAQSIGEPGTQMTLKTFHFAGVASMNV 1029

Query: 939  TQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            TQGVPRIKEIIN +K ISTP++   LE  ++E AAR+VK R+E+T LGQVAK I+ V+  
Sbjct: 1030 TQGVPRIKEIINASKNISTPVMNVTLEVANSEAAARMVKARLERTALGQVAKRIRAVLKP 1089

Query: 999  RL-----ASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP 1053
             L     A + I LD   IQ   L INA  V+++IV +                KL++  
Sbjct: 1090 SLTHQVGAFVEIRLDKVVIQALQLDINAHTVRDAIVAS----------------KLKV-- 1131

Query: 1054 PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGT 1113
                  + F L++L   LP VIV GI +VER V+   EK            KY L VEG 
Sbjct: 1132 -----GMGFALHNLMTALPHVIVAGIASVERAVVTFDEK----------TCKYSLGVEGM 1176

Query: 1114 GLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1173
             L AVMG  G+DGC+T +NH+ E ++ LGIEAAR  I+ EI  TM +HGM+ID RH MLL
Sbjct: 1177 DLTAVMGTLGVDGCRTATNHVMETERVLGIEAARTKIMTEIQTTMSSHGMTIDARHTMLL 1236

Query: 1174 ADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMG 1233
            AD MT++GEVLGITRFGI KM  SVLMLASFEKT DHLF+A+++GR D I GVSE IIMG
Sbjct: 1237 ADCMTYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAALHGRTDDITGVSESIIMG 1296

Query: 1234 IPMPLGTGILKIRQ 1247
            IPMP GTG+ K+ Q
Sbjct: 1297 IPMPTGTGLFKLHQ 1310


>gi|328874135|gb|EGG22501.1| RNA polymerase III [Dictyostelium fasciculatum]
          Length = 1507

 Score = 1284 bits (3323), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 676/1299 (52%), Positives = 863/1299 (66%), Gaps = 87/1299 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            MRN K++ L++  L K +   C     K   CP+C  +NG VKK V+ L +IH++ K  E
Sbjct: 220  MRNRKLDVLQRRALFKKVYTDCR----KKKICPKCNSVNGPVKK-VSALKLIHEKYKKEE 274

Query: 61   S----LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPE 113
                 +++F  A+    E +  V  A   LNP+ V  LFKR++  D E+L +     RPE
Sbjct: 275  EHRDLIEQFEDALKANAEMRNHVKKAQEDLNPLVVFNLFKRISYQDTELLDMDPDVGRPE 334

Query: 114  KLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFKSLA 172
            +LI+T++ VPP++IRPSV MDG S SNE+D+T +L  I+  N  ++   V+       + 
Sbjct: 335  RLILTHLLVPPVSIRPSVPMDGGSGSNEDDLTMKLSEILHINDHIKTN-VDRLEMQAVVE 393

Query: 173  GWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTV 232
             W+ LQ  VA YINS++ G+P  M+  +P+ G  QRLKGK GRFRGNLSGKRV+++GRTV
Sbjct: 394  DWDYLQASVAIYINSELPGLPLQMKPQKPIRGLSQRLKGKTGRFRGNLSGKRVDFSGRTV 453

Query: 233  ISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA 292
            ISPDPNL I EVAIP  +A  +TYPER +  NI++L++ I NGPDK+PGA  I YPDG  
Sbjct: 454  ISPDPNLNIDEVAIPQLIAVTMTYPERCTSFNIQRLQKYIINGPDKHPGANYIIYPDGEK 513

Query: 293  RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 352
            + L    R + A ELK G IV+RHL DGDV+LFNRQPSLH++SIMCH+AR+MPWRTLRFN
Sbjct: 514  KWLKYGNREKFAAELKIGDIVERHLIDGDVMLFNRQPSLHKLSIMCHKARVMPWRTLRFN 573

Query: 353  ESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSS 412
            E VC PYNADFDGDEMN+H PQTEEAR EAL+LMGV NNL TP+NGE LVA+TQDFLTSS
Sbjct: 574  ECVCTPYNADFDGDEMNIHCPQTEEARAEALILMGVTNNLITPRNGEPLVAATQDFLTSS 633

Query: 413  FLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMR 472
            +LI+R+D FYDRA F+ MC +  D  + +DLP P I+KP+ELWTGKQLF VL+RP     
Sbjct: 634  YLISRRDAFYDRARFTQMCTHFADAYEHIDLPQPTIVKPIELWTGKQLFEVLLRPSVKSH 693

Query: 473  VYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKD 532
            V VN     +TY+                MCP DG+V FRNSEL+ G + K+ +G GNKD
Sbjct: 694  VLVNFETNSRTYTKNTY------------MCPRDGYVCFRNSELMCGSIDKSIIGGGNKD 741

Query: 533  GLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENY 592
             L+ VL+RD+     +  M RLAKL AR++G+ GFSIGI DV+P  +L+ KK  +I   +
Sbjct: 742  SLFHVLMRDFTPAIAANAMTRLAKLCARFLGDQGFSIGIPDVKPSPDLNAKKDAIIKRAH 801

Query: 593  EVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMS 652
            + C+V + EY  G+L    GC   QTLEA +  IL+ IR++ GK C+  LP  NSPLIM+
Sbjct: 802  DKCDVFLTEYKSGRLAAASGCTVEQTLEARMNQILSGIRDECGKLCVSELPHYNSPLIMA 861

Query: 653  QCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSG 712
             CGSKGS INI+QM+ACVGQQ V G R PNGF +R+ PHFP  ++EP AKGFV NSFY+G
Sbjct: 862  LCGSKGSNINIAQMIACVGQQIVNGTRIPNGFTNRTTPHFPHFSREPKAKGFVGNSFYTG 921

Query: 713  LSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFL 772
            +  TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+KALEDLS QYD +VR++ G IVQF+
Sbjct: 922  MIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTQYDYTVRDSTGGIVQFI 981

Query: 773  YGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKES 832
            YGDDG+DPA ME K   P++F R ++ VK       ++ L P ++ + +E  L       
Sbjct: 982  YGDDGLDPAGMEAKE-RPVDFIRAMLAVKNRRQCRDEKTLRPFEIKKYLEGVLDGNKFIQ 1040

Query: 833  CSEAFLNSLRKFF------------EGQQDKLDKKIKFV---------EDI--------- 862
            C+E F   +R +F            EG  ++L +  KF+         EDI         
Sbjct: 1041 CTEYFKEEIRTYFYGKPKKGNSKEVEGYIEELVRLRKFLQLPPMLDEDEDIESCGPVDTE 1100

Query: 863  ---------------GWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTA 907
                            + DK Q ++++ H+   IT  Q++ F+  C  +Y   R+E GTA
Sbjct: 1101 MGDATSAGDSYDARFAFKDKEQTVDQL-HR---ITTTQMDQFLDICLDKYNRARIEPGTA 1156

Query: 908  IGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECN 967
            +GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K ISTPIITA L C+
Sbjct: 1157 VGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKTISTPIITATLNCD 1216

Query: 968  DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKES 1027
            D+  AAR+V GRIEKT LGQ++  IK V  S    + + +D   I    + ++A+ +K S
Sbjct: 1217 DDIRAARIVTGRIEKTTLGQISVYIKEVFRSGGCYLSVKIDKHFIDSMQIEVSAESIKAS 1276

Query: 1028 IVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK-IHFELYSLKNVLPMVIVKGIKTVERVV 1086
            I+ T  +KLK  +I+ L   KL I PP    + I + L  LKN LP VIV GI TV RVV
Sbjct: 1277 ILGTKGLKLKPANIETLG-EKLRIKPPEHNRRLILYSLQFLKNNLPNVIVHGIPTVNRVV 1335

Query: 1087 IAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAA 1146
            I+         K N ++ KY+LLVEG  L  VM   GI G  T SNHI EV++ LGIEA 
Sbjct: 1336 IS---------KPNEKEDKYQLLVEGYDLLKVMATPGIKGTHTCSNHIMEVEKVLGIEAV 1386

Query: 1147 RICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEK 1206
            R  II EI   M +HGMSID RH+ML+ADLM F+GE+LGITRFGI KM +SVLMLASFEK
Sbjct: 1387 RSIIISEIQMIMVSHGMSIDIRHIMLMADLMCFKGEILGITRFGIAKMKESVLMLASFEK 1446

Query: 1207 TADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            T DHLF+A+V+ R D I GVSECIIMGIP+PLGTG+ K+
Sbjct: 1447 TTDHLFDAAVHRRQDDIVGVSECIIMGIPVPLGTGLFKL 1485


>gi|330791878|ref|XP_003284018.1| RNA polymerase III, largest subunit [Dictyostelium purpureum]
 gi|325086064|gb|EGC39460.1| RNA polymerase III, largest subunit [Dictyostelium purpureum]
          Length = 1396

 Score = 1280 bits (3312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 663/1290 (51%), Positives = 864/1290 (66%), Gaps = 74/1290 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK-VT 59
            MRN K++ L++  L+K I   C     K  +C +C   NGM++K+ A   IIH++ K   
Sbjct: 123  MRNKKLDNLQRKSLLKKIFLDCR----KTKECFKCKSTNGMIRKSGA-FKIIHEKYKGKQ 177

Query: 60   ESLQEFAS----AITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RP 112
            E+LQE+ +    A+ +  E K+ +  A   LNP+  L LFK+++  D E++ ++    RP
Sbjct: 178  ENLQEYYALYDEAVKYNPEMKSHIKKAQEDLNPLVALNLFKKISYQDIEIMNMNPIVGRP 237

Query: 113  EKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFKSL 171
            E+LI+T + VPP++IRPSV MDG S +NE+D+T +L  II  N  ++   V+    +  +
Sbjct: 238  ERLILTYMLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEIIHINEHIRTN-VDRAEMYSIM 296

Query: 172  AGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRT 231
              W+ LQ   A YINSDV G+P  M+  +P+ G  QRLKGK GRFRGNLSGKRV+++GRT
Sbjct: 297  EDWDYLQATCAIYINSDVPGLPLQMKPTKPVRGLSQRLKGKTGRFRGNLSGKRVDFSGRT 356

Query: 232  VISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGT 291
            VISPDPNL I EVA+P  +A  +TYPERVSD+NIE+L++ + NGPD++PGA  I Y DG 
Sbjct: 357  VISPDPNLNIDEVAVPQLIALTMTYPERVSDYNIERLQKYVINGPDRHPGANYIIYQDGV 416

Query: 292  ARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRF 351
             + L    R + A ELK G IV+RH+ DGD++LFNRQPSLH++SIM H+AR+MPWRTLRF
Sbjct: 417  KKWLKFGNREKFAAELKVGDIVERHIIDGDIMLFNRQPSLHKLSIMSHKARVMPWRTLRF 476

Query: 352  NESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTS 411
            NE VC PYNADFDGDEMN+H+PQTEEAR EA +LMGV NNL TP+NGE LVA+TQDFLT+
Sbjct: 477  NECVCTPYNADFDGDEMNIHLPQTEEARAEATILMGVTNNLITPRNGEPLVAATQDFLTA 536

Query: 412  SFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANM 471
            S+LI+R+D FYDR  F+LMC +  D  + +DLP PAILKP+ELWTGKQ+F VL+RP    
Sbjct: 537  SYLISRRDAFYDRYRFTLMCTHFADANEHIDLPPPAILKPIELWTGKQIFEVLLRPSVKS 596

Query: 472  RVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNK 531
             V      K +TYS  L             MCP DG+VYFRNSEL+ G + K+ +G GNK
Sbjct: 597  HVLCTFETKSRTYSKNLY------------MCPKDGYVYFRNSELMCGSIDKSIIGGGNK 644

Query: 532  DGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISEN 591
            + L+ +L+RD+     +  M RLAKL AR++G+ GFSIGI DVQP  +L  +K  +I   
Sbjct: 645  NSLFHILMRDFSPSIAANSMTRLAKLCARFLGDQGFSIGIPDVQPAPDLDQRKRDIIETA 704

Query: 592  YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIM 651
            Y  C+  +K++  G L +  GC   QT EA +   L++IR+D GK C+  LP  NSPLIM
Sbjct: 705  YSKCDQFLKDFENGNLPVASGCSMEQTFEAKMNQTLSQIRDDCGKLCVNDLPNYNSPLIM 764

Query: 652  SQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYS 711
              CGSKGS INI+QM+ CVGQQ V G R PNGF +R+ PHF    K   AKGFV+NSFY+
Sbjct: 765  GLCGSKGSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPHFLHFQKNAKAKGFVSNSFYT 824

Query: 712  GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQF 771
            G+  TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+KALEDLS  YD +VR++ G IVQF
Sbjct: 825  GMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRDSFGGIVQF 884

Query: 772  LYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKE 831
             YGDDG+DPA ME K   P++F R +  VK+T     +R L P ++ + VE  +      
Sbjct: 885  CYGDDGLDPAGMEAKD-RPVDFLRAMQAVKSTRRCINERALLPFEIRKKVEVIIKGKAFA 943

Query: 832  SCSEAFLNSLRKFFEGQ-----------------------------QDKLDKK---IKFV 859
             C++ F   + +FF G+                             +D L+++   +   
Sbjct: 944  ECTDLFKEEILEFFIGKPKQTGYIEELIKLRNQFGLKEYTEDTANIEDALERENEELSID 1003

Query: 860  EDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEP 919
            E I  +   Q+++++ H+   IT  Q+E+F+  C  +Y   ++E GTA+GAIGAQSIGEP
Sbjct: 1004 ERIARESNQQVVDQI-HR---ITSTQVELFLDICLDKYNRAKIEPGTAVGAIGAQSIGEP 1059

Query: 920  GTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGR 979
            GTQMTLKTFHFAGVASMN+T GVPRIKEIINGAK ISTPIITA L C+++  +AR+V GR
Sbjct: 1060 GTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKNISTPIITASLNCDNDIRSARIVAGR 1119

Query: 980  IEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQ 1039
            IEKT LG VA+ IK V+      + I +D + I    L INA  + +SI+ T  +KLK  
Sbjct: 1120 IEKTTLGHVAEHIKEVVKRGGCYLSIKIDKKFIDSLQLEINARTIAQSILSTKGLKLKVD 1179

Query: 1040 HIKVLDFRKLEIFPPVD-KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVK 1098
             +  L   KL I PP + + +  + L SLKN LP VIVKGI T+ RVVI+       K+ 
Sbjct: 1180 QVSALSEYKLRITPPGNCREQTLYYLQSLKNNLPSVIVKGIPTINRVVIS-------KID 1232

Query: 1099 ENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETM 1158
            E  E  +Y+LLVEG  L+AVM   GI G  T SNHI E + TLGIE AR  I+ EI   M
Sbjct: 1233 EKQE--RYQLLVEGYDLRAVMATSGIKGTHTTSNHIMECENTLGIETARNTIMSEIQMIM 1290

Query: 1159 KAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNG 1218
             +HGMSID RH+MLLADLM+F+GE+LGITRFGI KM +SVLMLASFEKT DHLF+A+V+ 
Sbjct: 1291 TSHGMSIDVRHVMLLADLMSFKGEILGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHH 1350

Query: 1219 RDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            R D I GVSECIIMG  +PLGTG+ K+ ++
Sbjct: 1351 RQDDIVGVSECIIMGSVIPLGTGLFKLLRK 1380


>gi|298709808|emb|CBJ31607.1| RNA polymerase III, largest subunit [Ectocarpus siliculosus]
          Length = 1518

 Score = 1276 bits (3303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 675/1344 (50%), Positives = 888/1344 (66%), Gaps = 117/1344 (8%)

Query: 1    MRNPK-MEALRKTDLMKSIVKKCSTMASKAVKC--PRCGYINGMVKKAVA--VLGIIHDR 55
            MRNP+ M AL + +L K IV +C     K+  C    C  +NG VKK      L ++HDR
Sbjct: 175  MRNPRGMGALERGNLHKKIVTECK----KSTSCFHESCYAVNGTVKKVTGSQTLKLVHDR 230

Query: 56   SKVTES---LQEFAS----AITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL 108
             K       LQE  +    A    +E    + +A   L+ + VL LF+RMTD D E+L++
Sbjct: 231  FKGKPPGNVLQELTADMKVAAQANREIPKHLGMAMEDLSALRVLHLFQRMTDEDAELLWM 290

Query: 109  SER---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEA 164
              R   PE LII N+ VPP+ IRPSV MD G  SNE+D+T +L+ II  N S++  L   
Sbjct: 291  DARVGRPENLIIENLLVPPVPIRPSVAMDLGGGSNEDDLTVKLQEIIDVNVSVKAALDNG 350

Query: 165  NSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKR 224
             +    +  W+ LQ+EVAQYIN ++ G+P  +Q  +P+ G  QRLKGK GRFRGNLSGKR
Sbjct: 351  ANVKMIMENWDFLQLEVAQYINGEMPGLPRPIQTTKPIRGLCQRLKGKSGRFRGNLSGKR 410

Query: 225  VEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARM 284
            V+++ RTVISPDPNL++ +V +P R+A+I+T+PE VS +NIEKLR+ ++NGPD +PGA  
Sbjct: 411  VDFSARTVISPDPNLRVDQVGVPERVAKIMTFPEMVSRYNIEKLRKVVRNGPDVHPGANQ 470

Query: 285  IRYPDGTA---RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRA 341
            +R   G     ++     R QL+ ELK G IV+RH+EDGDVVLFNRQPSLH+MSIM HRA
Sbjct: 471  VRLDGGDGFVKKLFIEHVREQLSEELKIGDIVERHMEDGDVVLFNRQPSLHKMSIMSHRA 530

Query: 342  RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEIL 401
            +IMPWRT RFNE VC+PYNADFDGDEMNMH+PQTEEAR EA  LM V  NL TP+NGE L
Sbjct: 531  KIMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASQLMAVPYNLVTPRNGEPL 590

Query: 402  VASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLF 461
            VA+TQDFLT+++LIT++D F+D   F  +  YMGD  + VD+P PAI+KPV LWTGKQ  
Sbjct: 591  VAATQDFLTAAYLITQRDIFFDHETFCKVASYMGDAGEHVDIPPPAIMKPVALWTGKQAM 650

Query: 462  SVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQL 521
            S+++RP    ++ VN   KEK Y                 +CP+DG+V + NSEL+ G L
Sbjct: 651  SLMVRPSKENKILVNFESKEKNYKGNRF------------LCPSDGYVCYHNSELMCGNL 698

Query: 522  GKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH-GFSIGIDDVQPKKEL 580
             K TLG+G+K GL+  L+R++G    + CMNRLAK+ AR++G H GFSIGI+DV P  EL
Sbjct: 699  AKKTLGDGSKTGLFYTLIREHGPLEAARCMNRLAKVCARYLGGHRGFSIGIEDVTPGAEL 758

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
            S  K +L+++ Y   + +I+ +N  ++ LKPGCDA Q+LE+ +  +L ++RE AG   M 
Sbjct: 759  SALKHELLTDGYTEADEQIRLFNNNRMPLKPGCDAIQSLESELNGLLGKLRETAGTGAMK 818

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
            +LPW NSP IM++CGSKGSP+NISQM+ACVGQQSVGG+R  NGF++R+LPHF   +  PA
Sbjct: 819  ALPWVNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIQNGFVNRTLPHFEANSLFPA 878

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            AKGFVANSFYSGL+ATEFFFHTMGGREGLVDTAVKTA+TGYM+RRL+KALEDLS+QYD +
Sbjct: 879  AKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDRT 938

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKS-------------GEPLNFDRLLMKVKATCPPA 807
            VRN+   I+QF+YGDDG++P+ ME                G+P+++ +L+ +V +T    
Sbjct: 939  VRNSEQTIIQFVYGDDGLNPSCMEANMRVKIRGADDFLDVGQPVDYAKLMTQVTSTNLFL 998

Query: 808  GQRYLSPQQVSEIVEKQLAAYGKE-----------------------SCSEAFLNSLRKF 844
             ++ LSP+++ ++  + LA  GKE                       +  +     LR  
Sbjct: 999  HEKTLSPKELRQLCNRVLA--GKEFQQILPQGQRWTEELKQYLQDLVTTRKGLREGLRLP 1056

Query: 845  FEGQQDKLDKKIKFVEDIG----------WD--------DKSQILEEVTHKTSGITEKQL 886
             E     +       E +G          W+        ++S+  E V   T  +T  Q 
Sbjct: 1057 TEAPATAVGTAAWRAEKLGPAGSAKFKDWWEFAGIEGTPEESEAGELVVSNTCRVTASQA 1116

Query: 887  EVFIQTCFSRYRVKRVEAGTA----IGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
            + F++ C  +Y+   VE G A    +GAIGAQSI EPGTQMTLKTFHFAGVASMN+T GV
Sbjct: 1117 KEFLRRCLDKYKRALVEPGEASLSRVGAIGAQSISEPGTQMTLKTFHFAGVASMNVTLGV 1176

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PR+KEIIN +K ISTPIITA+L  +D++ +ARVVK +IEKT LGQVA  +K V ++    
Sbjct: 1177 PRLKEIINASKNISTPIITAKLVQDDSKTSARVVKAKIEKTTLGQVAVYMKEVFSASECF 1236

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQ------TPKI--KLKQQHIKVL-DFRKLEIFP 1053
            I I LDM  +QD HL IN   V+ SI++       P++   LK Q++ +     K+++ P
Sbjct: 1237 IAIKLDMHAVQDLHLDINVHTVRHSILKGNFGETRPRVLRDLKPQNVVISGGGHKIKVMP 1296

Query: 1054 P------------VDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENG 1101
            P              + K  F L +LK VLP VIV+GI +V R VI  +E          
Sbjct: 1297 PELSGAKSARAAETVRPKTFFVLQALKAVLPGVIVQGIPSVNRAVINVQENSSGAASGAA 1356

Query: 1102 EKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAH 1161
             K++Y LLVEG GL AVMGA GIDG +T+SNHI EV  TLG+EAARI I +EI   MKA+
Sbjct: 1357 PKERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEVFHTLGVEAARIIISEEITYIMKAY 1416

Query: 1162 GMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD 1221
            G+SID+RH++LLAD+MTF+GEVLGITRFG+ KM +SVLMLASFEKT DHLF+ASV+GR D
Sbjct: 1417 GISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHD 1476

Query: 1222 RIEGVSECIIMGIPMPLGTGILKI 1245
             I GVSECIIMGIP+PLGTG+ K+
Sbjct: 1477 AIVGVSECIIMGIPIPLGTGLFKL 1500


>gi|336373147|gb|EGO01485.1| hypothetical protein SERLA73DRAFT_103293 [Serpula lacrymans var.
            lacrymans S7.3]
          Length = 1400

 Score = 1264 bits (3272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1271 (51%), Positives = 877/1271 (69%), Gaps = 59/1271 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             R P +E +++  L K++    +TM+ K V CP C   NG VKKA A L IIHD+ +  +
Sbjct: 123  FRRPNLENIQRQSLSKAV----NTMSRKCVYCPYCSATNGAVKKAGA-LKIIHDKFRAKK 177

Query: 61   SLQE-------FASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
            + +E       FA A+   KE    +N A +  LNP+ VL LFKR++D DCE+L L    
Sbjct: 178  TAEEMEKWKRTFAPAVEAQKELGMYLNKAVHEDLNPLKVLDLFKRISDEDCELLGLRPAH 237

Query: 111  -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE+ I   I+VPP+ IRPSV  DG+ SNE+D+T +L  I+ TNA ++Q L +     +
Sbjct: 238  GRPEEYIWQYISVPPVCIRPSVAQDGA-SNEDDLTVKLTEIVFTNALIKQGLSKGAPTAQ 296

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  WE LQ+ VA YINS++ GVP S    +P+ GFVQRLKGKQGRFRGNLSGKRV+++G
Sbjct: 297  FMEHWEFLQLSVAMYINSELPGVP-SQPGQKPMRGFVQRLKGKQGRFRGNLSGKRVDFSG 355

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY-P 288
            RTVISPDPNL+I EVA+P R+A++LTYPERV+ HNIE L+Q ++NG D +PGA  +    
Sbjct: 356  RTVISPDPNLRIDEVAVPERVAKVLTYPERVTPHNIEGLKQAVRNGCDVHPGANYVTAGS 415

Query: 289  DGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 348
             G  + L    RN +A  L+ G  V+RH+ +GD+VLFNRQPSLH++SIMCHRARI PWR+
Sbjct: 416  SGFKKFLKFGNRNAVADTLRVGDTVERHIINGDIVLFNRQPSLHKLSIMCHRARIRPWRS 475

Query: 349  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDF 408
             R NE VC PYNADFDGDEMN+HVPQTEEARTEAL LM V++NL TP+NGE ++A+ QDF
Sbjct: 476  FRLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGEPVIAAIQDF 535

Query: 409  LTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
            +T+S+LI+RKDTF+DR +F+ +CCY  D   ++D+P PAI KPV LWTGKQ+F+VL+RP+
Sbjct: 536  ITASYLISRKDTFFDRRSFTQICCYFADADMQIDIPPPAIWKPVRLWTGKQIFNVLMRPN 595

Query: 469  ANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET---MCPNDGFVYFRNSELISGQLGKAT 525
             + +V+VN+  K     NK    + +   R++    + PNDG++   NSE++ G + KAT
Sbjct: 596  KDSKVFVNVESK----CNKPQEPKAEFYPRMKPAPDLSPNDGWLVIVNSEIMCGVMDKAT 651

Query: 526  LGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKG 585
            +G+G K  ++ V++RDYG H  +  MNRLAKL ARW+ N GFS+GI+DV P   L+ KK 
Sbjct: 652  VGSGKKKSIFGVIMRDYGPHEAAAAMNRLAKLCARWLANFGFSLGINDVIPGPILAAKKD 711

Query: 586  KLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR 645
            +L+ + Y  C   I +  +GKL+ KPGC+  QTLEA+I+ +L+++R+  G+ CM  L   
Sbjct: 712  ELVEKAYADCLDLIAQAKKGKLENKPGCNQEQTLEALISSVLSKVRDAVGEICMKELSRH 771

Query: 646  NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFV 705
            N+PLIM+ CGSKGS IN+SQMVACVGQQ + G R P+GF DRSLPHFP+K+KEP +KGFV
Sbjct: 772  NAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSKEPPSKGFV 831

Query: 706  ANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAG 765
             NSFYSGL ATEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDL+ QYD SVRN+ 
Sbjct: 832  RNSFYSGLRATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNST 891

Query: 766  GCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQL 825
            G +VQF YGDDG+DPA +EG + +P+ F+R      +     G R L P +V EIV+++L
Sbjct: 892  GGVVQFTYGDDGLDPACLEGDA-QPIEFERAWSHALSIGNRRG-RSLLPYEVLEIVDQEL 949

Query: 826  AA--YGKESCSEAFLNSLRKFF--------------EGQQDKLDKKIKFVED----IGWD 865
            +   +  E C+ A+L ++R +                G  D L++  ++  D    +G  
Sbjct: 950  STKRFTTE-CTAAYLATIRGYITDNVAHTLATMRQSRGMFDALERAAEWDADTDLSLGAS 1008

Query: 866  DKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTL 925
            D  +    +    S +TE QL  F++ C+ +Y   R+E G+ +GA+GAQSIGEPGTQMTL
Sbjct: 1009 DADK---AIVDNKSKVTEDQLRCFLELCWVKYVKARIEPGSTVGAVGAQSIGEPGTQMTL 1065

Query: 926  KTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLL 985
            KTFHFAGVASMN+T GVPRIKEIIN AK ISTPII+ +L  +D+E +AR+VKGR+EKT L
Sbjct: 1066 KTFHFAGVASMNVTLGVPRIKEIINAAKAISTPIISCKLVTSDSEASARIVKGRLEKTHL 1125

Query: 986  GQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLD 1045
            G VA  ++         I + +D++ IQ   L +  D +K  IV   K+K+KQ+ I VL 
Sbjct: 1126 GDVASVLEEAWAPEYTYIGVIVDVDAIQKLQLELTLDDIKWGIVAAKKLKIKQESITVLP 1185

Query: 1046 FR-KLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKK 1104
             + +L I+  +D    ++ L  LK +LP V+VKG+ T++R +I  KEK+  K    G+K 
Sbjct: 1186 RKNRLRIY--IDGQDKYYRLRELKRLLPDVVVKGVPTIQRAIINIKEKDDAK----GKKG 1239

Query: 1105 KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMS 1164
               LLVEG GLQ VM  EGI G  T SNH+ EV Q LGIEAAR  II+EI  TM++HGMS
Sbjct: 1240 DKELLVEGYGLQKVMVTEGIVGEHTSSNHVIEVAQVLGIEAARRTIINEIQYTMQSHGMS 1299

Query: 1165 IDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIE 1224
            ID RH+MLL D+M+++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+A+  G++D I 
Sbjct: 1300 IDPRHVMLLGDVMSYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAAAFGKNDSIA 1359

Query: 1225 GVSECIIMGIP 1235
            GVSE IIMG P
Sbjct: 1360 GVSESIIMGNP 1370


>gi|336386001|gb|EGO27147.1| hypothetical protein SERLADRAFT_446372 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1403

 Score = 1260 bits (3261), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 656/1271 (51%), Positives = 876/1271 (68%), Gaps = 59/1271 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             R P +E +++  L K++    +TM+ K V CP C   NG VKKA A L IIHD+ +  +
Sbjct: 126  FRRPNLENIQRQSLSKAV----NTMSRKCVYCPYCSATNGAVKKAGA-LKIIHDKFRAKK 180

Query: 61   SLQE-------FASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
            + +E       FA A+   KE    +N A +  LNP+ VL LFKR++D DCE+L L    
Sbjct: 181  TAEEMEKWKRTFAPAVEAQKELGMYLNKAVHEDLNPLKVLDLFKRISDEDCELLGLRPAH 240

Query: 111  -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE+ I   I+VPP+ IRPSV  DG+ SNE+D+T +L  I+ TNA ++Q L +     +
Sbjct: 241  GRPEEYIWQYISVPPVCIRPSVAQDGA-SNEDDLTVKLTEIVFTNALIKQGLSKGAPTAQ 299

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  WE LQ+ VA YINS++ GVP S    +P+ GFVQRLKGKQGRFRGNLSGKRV+++G
Sbjct: 300  FMEHWEFLQLSVAMYINSELPGVP-SQPGQKPMRGFVQRLKGKQGRFRGNLSGKRVDFSG 358

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY-P 288
            RTVISPDPNL+I EVA+P R+A++LTYPERV+ HNIE L+Q ++NG D +PGA  +    
Sbjct: 359  RTVISPDPNLRIDEVAVPERVAKVLTYPERVTPHNIEGLKQAVRNGCDVHPGANYVTAGS 418

Query: 289  DGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 348
             G  + L    RN +A  L+ G  V+RH+ +GD+VLFNRQPSLH++SIMCHR +I PWR+
Sbjct: 419  SGFKKFLKFGNRNAVADTLRVGDTVERHIINGDIVLFNRQPSLHKLSIMCHRVKIRPWRS 478

Query: 349  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDF 408
             R NE VC PYNADFDGDEMN+HVPQTEEARTEAL LM V++NL TP+NGE ++A+ QDF
Sbjct: 479  FRLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGEPVIAAIQDF 538

Query: 409  LTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
            +T+S+LI+RKDTF+DR +F+ +CCY  D   ++D+P PAI KPV LWTGKQ+F+VL+RP+
Sbjct: 539  ITASYLISRKDTFFDRRSFTQICCYFADADMQIDIPPPAIWKPVRLWTGKQIFNVLMRPN 598

Query: 469  ANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET---MCPNDGFVYFRNSELISGQLGKAT 525
             + +V+VN+  K     NK    + +   R++    + PNDG++   NSE++ G + KAT
Sbjct: 599  KDSKVFVNVESK----CNKPQEPKAEFYPRMKPAPDLSPNDGWLVIVNSEIMCGVMDKAT 654

Query: 526  LGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKG 585
            +G+G K  ++ V++RDYG H  +  MNRLAKL ARW+ N GFS+GI+DV P   L+ KK 
Sbjct: 655  VGSGKKKSIFGVIMRDYGPHEAAAAMNRLAKLCARWLANFGFSLGINDVIPGPILAAKKD 714

Query: 586  KLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR 645
            +L+ + Y  C   I +  +GKL+ KPGC+  QTLEA+I+ +L+++R+  G+ CM  L   
Sbjct: 715  ELVEKAYADCLDLIAQAKKGKLENKPGCNQEQTLEALISSVLSKVRDAVGEICMKELSRH 774

Query: 646  NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFV 705
            N+PLIM+ CGSKGS IN+SQMVACVGQQ + G R P+GF DRSLPHFP+K+KEP +KGFV
Sbjct: 775  NAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSKEPPSKGFV 834

Query: 706  ANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAG 765
             NSFYSGL ATEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDL+ QYD SVRN+ 
Sbjct: 835  RNSFYSGLRATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNST 894

Query: 766  GCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQL 825
            G +VQF YGDDG+DPA +EG + +P+ F+R      +     G R L P +V EIV+++L
Sbjct: 895  GGVVQFTYGDDGLDPACLEGDA-QPIEFERAWSHALSIGNRRG-RSLLPYEVLEIVDQEL 952

Query: 826  AA--YGKESCSEAFLNSLRKFF--------------EGQQDKLDKKIKFVED----IGWD 865
            +   +  E C+ A+L ++R +                G  D L++  ++  D    +G  
Sbjct: 953  STKRFTTE-CTAAYLATIRGYITDNVAHTLATMRQSRGMFDALERAAEWDADTDLSLGAS 1011

Query: 866  DKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTL 925
            D  +    +    S +TE QL  F++ C+ +Y   R+E G+ +GA+GAQSIGEPGTQMTL
Sbjct: 1012 DADK---AIVDNKSKVTEDQLRCFLELCWVKYVKARIEPGSTVGAVGAQSIGEPGTQMTL 1068

Query: 926  KTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLL 985
            KTFHFAGVASMN+T GVPRIKEIIN AK ISTPII+ +L  +D+E +AR+VKGR+EKT L
Sbjct: 1069 KTFHFAGVASMNVTLGVPRIKEIINAAKAISTPIISCKLVTSDSEASARIVKGRLEKTHL 1128

Query: 986  GQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLD 1045
            G VA  ++         I + +D++ IQ   L +  D +K  IV   K+K+KQ+ I VL 
Sbjct: 1129 GDVASVLEEAWAPEYTYIGVIVDVDAIQKLQLELTLDDIKWGIVAAKKLKIKQESITVLP 1188

Query: 1046 FR-KLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKK 1104
             + +L I+  +D    ++ L  LK +LP V+VKG+ T++R +I  KEK+  K    G+K 
Sbjct: 1189 RKNRLRIY--IDGQDKYYRLRELKRLLPDVVVKGVPTIQRAIINIKEKDDAK----GKKG 1242

Query: 1105 KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMS 1164
               LLVEG GLQ VM  EGI G  T SNH+ EV Q LGIEAAR  II+EI  TM++HGMS
Sbjct: 1243 DKELLVEGYGLQKVMVTEGIVGEHTSSNHVIEVAQVLGIEAARRTIINEIQYTMQSHGMS 1302

Query: 1165 IDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIE 1224
            ID RH+MLL D+M+++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+A+  G++D I 
Sbjct: 1303 IDPRHVMLLGDVMSYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAAAFGKNDSIA 1362

Query: 1225 GVSECIIMGIP 1235
            GVSE IIMG P
Sbjct: 1363 GVSESIIMGNP 1373


>gi|170106087|ref|XP_001884255.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164640601|gb|EDR04865.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1397

 Score = 1253 bits (3242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/1271 (51%), Positives = 865/1271 (68%), Gaps = 65/1271 (5%)

Query: 4    PKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQ 63
            P +E +++  L K++    +TMA K V CP C   NG VKKA A L IIHD+ +  ++  
Sbjct: 129  PNLENMQRQSLSKAV----NTMARKVVYCPYCSATNGAVKKAGA-LKIIHDKFRAKKTAD 183

Query: 64   E-------FASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYLSE---RP 112
            E       FA A+   KE    +N A +  LN + VL LF+R++D DCE+L L     RP
Sbjct: 184  ELERWKKTFAPALEAQKELAMYINKAVHEDLNALKVLDLFRRISDEDCELLGLHPDWGRP 243

Query: 113  EKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLA 172
            E+ I   ++VPP+ IRPSV  DG+ SNE+D+T +L  I+ TNA ++Q L + +   + + 
Sbjct: 244  EQFIWQYLSVPPVCIRPSVAQDGA-SNEDDLTVKLTEIVFTNALIRQGLAKGSPTPQFME 302

Query: 173  GWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTV 232
             WE LQ+ VA YINS++ GVP S    +P+ GFVQRLKGKQGRFRGNLSGKRV+++GRTV
Sbjct: 303  QWEFLQLSVAMYINSELPGVP-SQPGQKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRTV 361

Query: 233  ISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA 292
            ISPDPNL+I EVA+P R+A+ILTYPERV+ HNI  LRQ I+NGPD +PGA  +   D   
Sbjct: 362  ISPDPNLRIDEVAVPERVAKILTYPERVTTHNINALRQAIRNGPDVHPGANFVARGDNKK 421

Query: 293  RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 352
             + +G  R  +A  L  G +V+RH+ DGD++LFNRQPSLH++SIMCHRA+I PWRT R N
Sbjct: 422  FLRFGN-RAAIADGLGIGDVVERHIIDGDIILFNRQPSLHKLSIMCHRAKIRPWRTFRLN 480

Query: 353  ESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSS 412
            E VC PYNADFDGDEMN+HVPQTEEARTEAL LM V++NL TP+NGE ++A+ QDF+T+S
Sbjct: 481  ECVCGPYNADFDGDEMNLHVPQTEEARTEALELMNVKHNLVTPRNGEPVIAAIQDFITAS 540

Query: 413  FLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMR 472
            FL++RKD F DR  F+ +CCY  D   ++D+P P I KPV LWTGKQ+F+VLIRP+    
Sbjct: 541  FLLSRKDQFLDRRQFTQICCYFADADMQIDIPPPTIWKPVRLWTGKQIFNVLIRPNKKSN 600

Query: 473  VYVNLTVKEKTYSNKLIRTEGDEEIRIET-----MCPNDGFVYFRNSELISGQLGKATLG 527
            + VN+  K   +          EE + E      + PNDG++   NSE++ G + KAT+G
Sbjct: 601  ILVNVESKCHKW----------EEAKPENYPSPDLSPNDGWLVIVNSEIMCGVMDKATVG 650

Query: 528  NGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKL 587
            +G K  ++ V++RDYG H  +  MNRLAKL ARW+ N+GFS+GI+DV P  ELS +K  L
Sbjct: 651  SGKKKSIFGVIMRDYGPHEAAAAMNRLAKLCARWLANYGFSLGINDVIPGPELSRQKDIL 710

Query: 588  ISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNS 647
            + + Y  C   I    +GKL+ KPGCD  QTLEA+I+ +L+++RE  G+ CM  L  +N+
Sbjct: 711  VEKAYADCQDLIALAKKGKLENKPGCDQEQTLEALISSVLSKVREAVGQICMKELSRQNA 770

Query: 648  PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVAN 707
            PLIM+ CGSKGS IN+SQMVACVGQQ + G R PNGF DRSLPHFP+K+KEP +KGFV N
Sbjct: 771  PLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPNGFQDRSLPHFPKKSKEPPSKGFVRN 830

Query: 708  SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
            SFYSGL ATEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDL+ QYD SVRN+ G 
Sbjct: 831  SFYSGLRATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNSTGG 890

Query: 768  IVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAA 827
            +VQF YGDDG+DPA +EG + +P++ DR      A    +G+ +L P ++SE+V+++L  
Sbjct: 891  VVQFRYGDDGLDPACLEGDA-QPIDLDRSWNHSLAIGGRSGRGFL-PFEISELVDRELGT 948

Query: 828  YGKES-CSEAFLNSLRKFFEGQQDKLDKKIKFV-----------EDIGWDDKSQIL---- 871
            +   S C+ A+L+ ++ F     D + +K+  V            +  WD ++ +     
Sbjct: 949  HRFISECTAAYLDLIKGFV---ADHIAQKVANVRKSRGMFEALEREAEWDAETDLSLGAS 1005

Query: 872  ---EEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTF 928
               + +    S +TE QL  F+  C+ +Y   R+E G+ +GA+GAQSIGEPGTQMTLKTF
Sbjct: 1006 DADKAIVDNKSKVTESQLRKFLDLCWVKYVKARIEPGSTVGAVGAQSIGEPGTQMTLKTF 1065

Query: 929  HFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQV 988
            HFAGVASMN+T GVPRIKEIIN AK ISTPII+ +L  +D+E +AR+VK R+EKTLLG +
Sbjct: 1066 HFAGVASMNVTLGVPRIKEIINAAKAISTPIISCKLVTSDSEASARIVKARLEKTLLGDI 1125

Query: 989  AKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR- 1047
            A  ++         I I +D+  IQ   L +  D +K +IV   K+K+KQ+ I V+  + 
Sbjct: 1126 ASVLEEAWAPEYTYIGIIVDVNAIQKLQLELTLDDIKWAIVNAKKLKIKQESITVMPRKN 1185

Query: 1048 KLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYR 1107
            +L I+  +D    ++ L  LK  L  V+VKG+ T++R +I  K+K   +    G+K    
Sbjct: 1186 RLRIY--IDGQDKYYRLRELKRGLADVVVKGVGTIQRAIINIKDKNDAR----GKKGDKE 1239

Query: 1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
            LLVEG GLQ  M  EGI G +T SNH+ EV Q LGIEAAR  II+EI  TMK+H M ID 
Sbjct: 1240 LLVEGYGLQKCMITEGIVGEQTSSNHVIEVAQVLGIEAARQTIINEIQYTMKSHDMIIDP 1299

Query: 1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
            RH+MLL D+M+++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+AS  G++D I GVS
Sbjct: 1300 RHVMLLGDVMSYKGEVLGITRFGVGKMKDSVLMLASFEKTTDHLFDASAFGKNDSIAGVS 1359

Query: 1228 ECIIMGIPMPL 1238
            E IIMG P  +
Sbjct: 1360 ESIIMGNPAAM 1370


>gi|340379445|ref|XP_003388237.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
            [Amphimedon queenslandica]
          Length = 1402

 Score = 1251 bits (3237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 656/1293 (50%), Positives = 865/1293 (66%), Gaps = 59/1293 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            +  P + +L K  + K I +KC  +++    CP C   NG VKK   V  I+H++ +  +
Sbjct: 129  LSRPFISSLAKKTIFKKINEKCKKIST----CPHCQSTNGSVKKC-GVFKILHEKIRKEK 183

Query: 61   SLQE--------FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS--- 109
              Q         FA A+ H ++ +  +N A  IL P+ VL LF+ + D D  +L ++   
Sbjct: 184  KFQSESSAFRETFAEAVIHNRDLEQYLNKAQEILTPLKVLNLFRNIPDEDIVLLGMTLAA 243

Query: 110  ERPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAF 168
             RPE LI+T + VPP+ IRPSV+ D  + + E+D+T +L+ II  N  + +         
Sbjct: 244  GRPEDLIVTRLLVPPLCIRPSVVSDTQAGTTEDDVTIKLRDIIFANDVIHRHRTTGAKVE 303

Query: 169  KSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYT 228
              L  W+ LQ++VA YINS+V G+P SM   +   GFVQRLKGKQGRFRGNLSGKRV+++
Sbjct: 304  MILEMWDYLQLQVALYINSEVSGIPPSMIPKKTTRGFVQRLKGKQGRFRGNLSGKRVDFS 363

Query: 229  GRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYP 288
            GRTVISPDPN++I +VA+PI +A+I+TYPE+V+ HNI  +RQ + NGPDK+PGA  + + 
Sbjct: 364  GRTVISPDPNMRIDQVAVPIHVAKIMTYPEKVTKHNIGLMRQLVINGPDKHPGANFMTHK 423

Query: 289  DGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 348
                R L    R ++A ELK G IV+RH+ DGDVVLFNRQPSLH++SIM H  ++MP RT
Sbjct: 424  GQNKRFLKYGDRKKIASELKHGDIVERHMIDGDVVLFNRQPSLHKLSIMAHFVKVMPHRT 483

Query: 349  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDF 408
             RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMGV++NL TP+NGE L+A+ QDF
Sbjct: 484  FRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGVKSNLVTPRNGEPLIAAIQDF 543

Query: 409  LTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFSVLI 465
            +++SFL+T+KD F+DRA F  +   M    D   ++D+P PAI+KPV+LWTGKQ+ SVLI
Sbjct: 544  ISASFLLTQKDVFFDRAQFFQIVSAMLSNHDSNIKIDIPPPAIIKPVKLWTGKQVMSVLI 603

Query: 466  RPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKAT 525
             P+    V +NL  K K Y      T+G      E MC ND FV   NS  + G L KAT
Sbjct: 604  SPNKKSNVIINLRAKGKQY------TKG------EDMCSNDSFVVIHNSSHLCGSLDKAT 651

Query: 526  LGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKG 585
            LG+G+K+ ++ VLLRDYG    + CM+RLA+L+  ++ N GFSIGI DV P + L + K 
Sbjct: 652  LGSGSKNSIFFVLLRDYGEQEAADCMSRLARLTPYYLSNRGFSIGIGDVTPGRGLVNAKN 711

Query: 586  KLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR 645
            KL+ E Y  C+  I+ + + KLQ +PGC A +TLEA I   L++IRED+GK C   L   
Sbjct: 712  KLVEEGYANCDQFIQSFLDKKLQTQPGCTADETLEAKIVHELSKIREDSGKVCKTELHPT 771

Query: 646  NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFV 705
            N+PL M+ CGSKGS INISQM+ACVGQQ++ G+R P+GF DR+LPHFPR +K PAAKGFV
Sbjct: 772  NTPLNMALCGSKGSFINISQMIACVGQQAISGKRTPDGFEDRTLPHFPRNSKAPAAKGFV 831

Query: 706  ANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAG 765
             NSFY+GL  TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K+LEDL   YDN+VR++ 
Sbjct: 832  KNSFYTGLVPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCCHYDNTVRDSD 891

Query: 766  GCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKAT----CPPAGQRYLSPQQVSEIV 821
            G IVQF+YG DG+DPA MEGK  +P++F  +L  V  +     P   +  LSP    ++ 
Sbjct: 892  GHIVQFIYGGDGLDPAAMEGKD-KPVDFTHVLHHVTVSYAMKFPCKSEPALSPLGFQKLF 950

Query: 822  EKQLAAYGK-ESCSEAFLNSLRKFFEGQQDKLDKKIKF--VEDIGWD--DKSQI--LEEV 874
            + Q   Y +   C++ F   L+ F   +  KL     F  + D   +  D S I  +  V
Sbjct: 951  D-QFCDYKRFHLCNDTFKTELKDFLAKKISKLQGLWSFFNITDTTSENSDNSDITYISPV 1009

Query: 875  THKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 934
             ++   IT  Q   F+ TC  ++   R+E G+A+GAI AQSIGEPGTQMTLKTFHFAGVA
Sbjct: 1010 LYQLGRITSTQFWTFVDTCIDKFLKSRIEPGSAVGAICAQSIGEPGTQMTLKTFHFAGVA 1069

Query: 935  SMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKI 994
            SMNIT GVPRIKEIIN AK ISTPII+  L   D+  AAR+VKGRIEKTLLG+V++ I+ 
Sbjct: 1070 SMNITLGVPRIKEIINAAKTISTPIISTSLVIEDDPEAARLVKGRIEKTLLGEVSRYIEE 1129

Query: 995  VMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP 1054
                    + I LD   I+   L INADIV+ SI+  PK+KLK  HI + D   L I+PP
Sbjct: 1130 AYEVDGCFLCIKLDKRRIRLLKLEINADIVQNSILNAPKLKLKPTHISIRDKWTLFIYPP 1189

Query: 1055 -VDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGT 1113
              +K+  ++ +  LK  LP V++KGI +V R +I + E        NG K KY+LLVEG 
Sbjct: 1190 ETEKTSEYYMMQKLKFALPRVVIKGINSVSRAIIHQDE-------SNG-KTKYKLLVEGL 1241

Query: 1114 GLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1173
             L+AVM   G+ G  T SNH  EV++TLGIEAAR  I++EI  TM  HGM+ID RH+MLL
Sbjct: 1242 NLRAVMATHGVKGNSTTSNHTIEVEKTLGIEAARQTIMNEIAYTMVNHGMNIDARHIMLL 1301

Query: 1174 ADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMG 1233
            ADLMTF+GEVLGITRFG+ KM +SVLMLASFEKT+DHLF+A+ +G+ D + GVS+CIIMG
Sbjct: 1302 ADLMTFKGEVLGITRFGLAKMKESVLMLASFEKTSDHLFDAAFHGQSDVVNGVSDCIIMG 1361

Query: 1234 IPMPLGTGILKIRQRDAVPPM-----LKYGAPD 1261
             PM LGTG+ ++  + +  P+     L +  PD
Sbjct: 1362 RPMSLGTGMFQLLFKPSRTPLPTKTSLIFDTPD 1394


>gi|426198021|gb|EKV47947.1| hypothetical protein AGABI2DRAFT_202225 [Agaricus bisporus var.
            bisporus H97]
          Length = 1402

 Score = 1246 bits (3224), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1265 (51%), Positives = 863/1265 (68%), Gaps = 48/1265 (3%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             R P +E +++  L KS+    +  A K V CP C  ING VKKA A L IIHD+ +  +
Sbjct: 126  FRRPNLENIQRQALSKSV----NATARKVVHCPYCSAINGTVKKAGA-LKIIHDKFRAKK 180

Query: 61   SLQE-------FASAITHTKESKAAVNVATYI-LNPVNVLFLFKRMTDTDCEVLYLSE-- 110
            + +E       F  A+   KE    +N A +  LNP+ VL LF+R++D DCE+L L    
Sbjct: 181  TAEEMEKWKKTFTKAVEAQKELSMYLNKAAHEELNPLKVLDLFRRVSDEDCELLGLQPAW 240

Query: 111  -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE+ +   ++VPP+ IRPSV  DG+ SNE+D+T +L  I+ TNA +++ L+  +   +
Sbjct: 241  GRPEEFVWQYLSVPPVCIRPSVAQDGA-SNEDDLTVKLTEIVFTNALIKKGLLRGSPTPQ 299

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  W+ LQ+ VA Y+NS++ GVP S    +P+ GFVQRLKGKQGRFRGNLSGKRV+++G
Sbjct: 300  FMEQWDFLQLSVAMYVNSELPGVP-SQPGQKPIRGFVQRLKGKQGRFRGNLSGKRVDFSG 358

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
            RTVISPDPNL+I EVA+P R+A+ILTYPERV+ HNIE LR+ ++NGPD +PGA  +   +
Sbjct: 359  RTVISPDPNLRIDEVAVPERVAKILTYPERVTPHNIEMLRKAVRNGPDVHPGANYVSRAE 418

Query: 290  GTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 349
             T ++L    RN +A  L  G +V+R + DGD+VLFNRQPSLH++SIMCHRA++ PWRT 
Sbjct: 419  -TKKILRFPNRNSIADGLAVGDVVERQIIDGDIVLFNRQPSLHKLSIMCHRAKVRPWRTF 477

Query: 350  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFL 409
            R NE VC PYNADFDGDEMN+HVPQT+EAR EAL LM V++NL TP+NG+ ++A+ QDF+
Sbjct: 478  RLNECVCGPYNADFDGDEMNLHVPQTDEARAEALELMSVKHNLVTPRNGDPVIAAIQDFI 537

Query: 410  TSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHA 469
            T+S+L++RKDTF+DR  F+ +CCY GD   ++D+P P I KP  LWTGKQ+F+VL+RP+ 
Sbjct: 538  TASYLLSRKDTFFDRRQFTQICCYFGDANMQIDIPPPTIWKPARLWTGKQVFNVLMRPNK 597

Query: 470  NMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNG 529
            N  V VN+  K   +            I    + PNDG++   NSE++ G + KAT+G+G
Sbjct: 598  NSEVLVNVECKCNKWEEAKPENYPSRMIPANDLSPNDGWLVVVNSEIMCGVMDKATVGSG 657

Query: 530  NKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLIS 589
             K  ++ V+LRDYG H  +  MNRLAKL AR++ N+GFS+GI+DV P  +L  +K  L+ 
Sbjct: 658  KKKSIFGVILRDYGPHEAAAAMNRLAKLCARYLANYGFSLGINDVIPGPQLKARKESLVE 717

Query: 590  ENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPL 649
            + Y  C   I    +GKL+ KPGC+  QTLEA+I+ +L+++RE  G+ CM  L   N+PL
Sbjct: 718  KAYADCQDLIALAKKGKLENKPGCNQEQTLEALISSVLSKVREAVGQICMKELSRHNAPL 777

Query: 650  IMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSF 709
            IM+ CGSKGS IN+SQMVACVGQQ + G R PNGF DRSLPHFP+K+KEP +KGFV NSF
Sbjct: 778  IMATCGSKGSVINVSQMVACVGQQIIAGHRVPNGFQDRSLPHFPKKSKEPPSKGFVRNSF 837

Query: 710  YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIV 769
            YSGL ATEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDL+ QYD SVRN+ G +V
Sbjct: 838  YSGLVATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNSTGGVV 897

Query: 770  QFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAA-- 827
            QF YGDDG+DPA +EG + +P++ +R    V A+   AG R L P +V E+ ++ LA   
Sbjct: 898  QFRYGDDGLDPACLEGDA-QPIDLERTWRHVSASAGRAG-RSLLPFEVLELTDQTLATPR 955

Query: 828  YGKESCSEAFLNSLRKFFE-------GQQDKLDKKIKFVE-DIGWDDKSQI--------L 871
            +  E  ++ +L+ LR F          +  +     + +E D  WD  + +        L
Sbjct: 956  FVNE-FTQTYLDILRDFIHNNVARNIAEHRQSRGMFEALERDTEWDADTDLSMGATDSDL 1014

Query: 872  EEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 931
              V +K + +TE+QL  F+  C+++Y   R+E G+ +GA+GAQSIGEPGTQMTLKTFHFA
Sbjct: 1015 SIVDNK-AKVTEEQLRRFLHVCWAKYAKARIEPGSTVGAVGAQSIGEPGTQMTLKTFHFA 1073

Query: 932  GVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKS 991
            GVASMN+T GVPRIKEIIN AK ISTPII+ +L    +E +AR+VKGR+EKTLLG VA  
Sbjct: 1074 GVASMNVTLGVPRIKEIINAAKAISTPIISCKLVTRSSEASARIVKGRLEKTLLGDVASV 1133

Query: 992  IKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL-DFRKLE 1050
            ++         I I +D E I+   L +  D +K +IV   K+K+KQ+ I V+ + ++L 
Sbjct: 1134 LEEAWAPEYVYICILIDTEAIRKLQLELTLDDIKWAIVNWKKLKVKQESIIVIPNKQRLR 1193

Query: 1051 IFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLV 1110
            I+  VD    ++ L  LK  LP ++VKG+ T+ R +I  K+++  K    G+K    LLV
Sbjct: 1194 IY--VDGQDKYYRLRELKRGLPNIVVKGVPTISRAIINIKDQDDAK----GKKGDKELLV 1247

Query: 1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
            EG GLQ  M  EG+ G  T SNH+ EV Q LGIEAAR  II+EI  TMK+H M ID RH+
Sbjct: 1248 EGYGLQKCMITEGVVGEATTSNHVIEVAQVLGIEAARRTIINEIQYTMKSHDMIIDPRHV 1307

Query: 1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
            MLL D+MT++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+AS  G+ D I GVSE I
Sbjct: 1308 MLLGDVMTYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDASAFGKTDSISGVSESI 1367

Query: 1231 IMGIP 1235
            IMG P
Sbjct: 1368 IMGNP 1372


>gi|409075371|gb|EKM75752.1| hypothetical protein AGABI1DRAFT_79519 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1402

 Score = 1243 bits (3217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1265 (51%), Positives = 862/1265 (68%), Gaps = 48/1265 (3%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             R P +E +++  L KS+    +  A K V CP C  ING VKKA A L IIHD+ +  +
Sbjct: 126  FRRPNLENIQRQALSKSV----NATARKVVHCPYCSAINGTVKKAGA-LKIIHDKFRAKK 180

Query: 61   SLQE-------FASAITHTKESKAAVNVATYI-LNPVNVLFLFKRMTDTDCEVLYLSE-- 110
            + +E       F  A+   KE    +N A +  LNP+ VL LF+R++D DCE+L L    
Sbjct: 181  TAEEMEKWKKTFTKAVEAQKELSMYLNKAAHEELNPLKVLDLFRRVSDEDCELLGLQPAW 240

Query: 111  -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE+ +   ++VPP+ IRPSV  DG+ SNE+D+T +L  I+ TNA +++ L+  +   +
Sbjct: 241  GRPEEFVWQYLSVPPVCIRPSVAQDGA-SNEDDLTVKLTEIVFTNALIKKGLLRGSPTPQ 299

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  W+ LQ+ VA Y+NS++ GVP S    +P+ GFVQRLKGKQGRFRGNLSGKRV+++G
Sbjct: 300  FMEQWDFLQLSVAMYVNSELPGVP-SQPGQKPIRGFVQRLKGKQGRFRGNLSGKRVDFSG 358

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
            RTVISPDPNL+I EVA+P R+A+ILTYPERV+ HNIE LR+ ++NGPD +PGA  +   +
Sbjct: 359  RTVISPDPNLRIDEVAVPERVAKILTYPERVTPHNIEMLRKAVRNGPDVHPGANYVSRAE 418

Query: 290  GTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 349
             T ++L    RN +A  L  G +V+R + DGD+VLFNRQPSLH++SIMCHRA++ PWRT 
Sbjct: 419  -TKKILRFPNRNSIADGLAVGDVVERQIIDGDIVLFNRQPSLHKLSIMCHRAKVRPWRTF 477

Query: 350  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFL 409
            R NE VC PYNADFDGDEMN+HVPQT+EAR EAL LM V++NL TP+NG+ ++A+ QDF+
Sbjct: 478  RLNECVCGPYNADFDGDEMNLHVPQTDEARAEALELMSVKHNLVTPRNGDPVIAAIQDFI 537

Query: 410  TSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHA 469
            T+S+L++RKDTF+DR  F+ +CCY GD   ++D+P P I KP  LWTGKQ+F+VL+RP+ 
Sbjct: 538  TASYLLSRKDTFFDRRQFTQICCYFGDANMQIDIPPPTIWKPARLWTGKQVFNVLMRPNK 597

Query: 470  NMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNG 529
               V VN+  K   +            I    + PNDG++   NSE++ G + KAT+G+G
Sbjct: 598  ISEVLVNVECKCNKWEEAKPENYPSRMIPANDLSPNDGWLVVVNSEIMCGVMDKATVGSG 657

Query: 530  NKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLIS 589
             K  ++ V+LRDYG H  +  MNRLAKL AR++ N+GFS+GI+DV P  +L  +K  L+ 
Sbjct: 658  KKKSIFGVILRDYGPHEAAAAMNRLAKLCARYLANYGFSLGINDVIPGPQLKARKESLVE 717

Query: 590  ENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPL 649
            + Y  C   I    +GKL+ KPGC+  QTLEA+I+ +L+++RE  G+ CM  L   N+PL
Sbjct: 718  KAYADCQDLIALAKKGKLENKPGCNQEQTLEALISSVLSKVREAVGQICMKELSRHNAPL 777

Query: 650  IMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSF 709
            IM+ CGSKGS IN+SQMVACVGQQ + G R PNGF DRSLPHFP+K+KEP +KGFV NSF
Sbjct: 778  IMATCGSKGSVINVSQMVACVGQQIIAGHRVPNGFQDRSLPHFPKKSKEPPSKGFVRNSF 837

Query: 710  YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIV 769
            YSGL ATEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDL+ QYD SVRN+ G +V
Sbjct: 838  YSGLVATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNSTGGVV 897

Query: 770  QFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAA-- 827
            QF YGDDG+DPA +EG + +P++ +R    V A+   AG R L P +V E+ ++ LA   
Sbjct: 898  QFRYGDDGLDPACLEGDA-QPIDLERTWRHVSASAGRAG-RSLLPFEVLELTDQTLATPR 955

Query: 828  YGKESCSEAFLNSLRKFFE-------GQQDKLDKKIKFVE-DIGWDDKSQI--------L 871
            +  E  ++ +L+ LR F          +  +     + +E D  WD  + +        L
Sbjct: 956  FVNE-FTQTYLDILRDFIHNNVARNIAEHRQSRGMFEALERDTEWDADTDLSMGATDSDL 1014

Query: 872  EEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 931
              V +K + +TE+QL  F+  C+++Y   R+E G+ +GA+GAQSIGEPGTQMTLKTFHFA
Sbjct: 1015 SIVDNK-AKVTEEQLRKFLHVCWAKYAKARIEPGSTVGAVGAQSIGEPGTQMTLKTFHFA 1073

Query: 932  GVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKS 991
            GVASMN+T GVPRIKEIIN AK ISTPII+ +L    +E +AR+VKGR+EKTLLG VA  
Sbjct: 1074 GVASMNVTLGVPRIKEIINAAKAISTPIISCKLVTRSSEASARIVKGRLEKTLLGDVASV 1133

Query: 992  IKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL-DFRKLE 1050
            ++         I I +D E I+   L +  D VK +IV   K+K+KQ+ I V+ + ++L 
Sbjct: 1134 LEEAWAPEYVYICILIDTEAIRKLQLELTLDDVKWAIVNWKKLKVKQESIIVIPNKQRLR 1193

Query: 1051 IFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLV 1110
            I+  VD    ++ L  LK  LP ++VKG+ T+ R +I  K+++  K    G+K    LLV
Sbjct: 1194 IY--VDGQDKYYRLRELKRGLPNIVVKGVPTISRAIINIKDQDDAK----GKKGDKELLV 1247

Query: 1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
            EG GLQ  M  EG+ G  T SNH+ EV Q LGIEAAR  II+EI  TMK+H M ID RH+
Sbjct: 1248 EGYGLQKCMITEGVVGEATTSNHVIEVAQVLGIEAARRTIINEIQYTMKSHDMIIDPRHV 1307

Query: 1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
            MLL D+MT++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+AS  G+ D I GVSE I
Sbjct: 1308 MLLGDVMTYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDASAFGKTDSISGVSESI 1367

Query: 1231 IMGIP 1235
            IMG P
Sbjct: 1368 IMGNP 1372


>gi|328766444|gb|EGF76498.1| hypothetical protein BATDEDRAFT_14837 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1407

 Score = 1241 bits (3212), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 655/1304 (50%), Positives = 865/1304 (66%), Gaps = 76/1304 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKV-- 58
            +RNP ++ +R+ D++K++    + +  K  +CP C  +NGMVKK V  L I+H++ K   
Sbjct: 129  LRNPNLDGVRRKDILKNL----NILCKKTARCPHCNSLNGMVKK-VGALKIVHEKFKKKA 183

Query: 59   -TESLQEFASAITHT----KESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---E 110
             TE   EF  +  H        KA ++ A   LNP+ ++ LF+ +++ DCE++ L+    
Sbjct: 184  KTEEEDEFRKSFNHAIKLDPTLKAHISKAQEDLNPLVIMNLFQAISNDDCELMGLNPELS 243

Query: 111  RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
            RPE+ I + + VPP+ IRPSV  + S S E+D+T     I+  N  ++  +++       
Sbjct: 244  RPEQYIWSALPVPPVCIRPSVGQENS-STEDDLTVLASEIVDINTKIRACMLDGTQTPLL 302

Query: 171  LAGWETLQVEVAQYINSDVRGVPFSMQVARPL--SGFVQRLKGKQGRFRGNLSGKRVEYT 228
            +  W+ LQ++ A YI SD+ G+P  +Q + P    GF QRLKGK GRFRGNLSGKRV+++
Sbjct: 303  MEYWDFLQLQCAMYITSDLPGIPTHLQGSLPKIKKGFCQRLKGKHGRFRGNLSGKRVDFS 362

Query: 229  GRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYP 288
            GRTVISPDPNL+I +VA+P R+A++LTYPERV+ +NIE+LR  + NGPD +PGA  +   
Sbjct: 363  GRTVISPDPNLRIDQVAVPERVAKVLTYPERVTPYNIERLRMNVINGPDVHPGATYVAAQ 422

Query: 289  D-GTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
              G  + L    RN+ A EL+ G  V+RHL+D DVVLFNRQPSLH++SIM H  ++ PWR
Sbjct: 423  STGMKKFLKFGNRNRTADELQYGDTVERHLQDDDVVLFNRQPSLHKLSIMSHFVKVRPWR 482

Query: 348  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQD 407
            T RFNE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMG +NNL TP+NGE L+A+TQD
Sbjct: 483  TFRFNECVCTPYNADFDGDEMNLHVPQTEEARAEAMELMGTKNNLVTPRNGEPLIAATQD 542

Query: 408  FLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRP 467
            F+T+S+L++RKD FYDR+ FS +C Y+GD +  +DLP P ILKP  LWTGKQ+F V++RP
Sbjct: 543  FITASYLLSRKDVFYDRSQFSQICSYLGDSLLNIDLPPPTILKPFALWTGKQVFGVMLRP 602

Query: 468  HANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET---------MCPNDGFVYFRNSELIS 518
                ++ +NL  K +T+        G    + +T          CPNDG+++F NSEL+S
Sbjct: 603  SQESKIIINLETKCRTFDKDQKDRHGIAFGKSKTQAGHLFHPSFCPNDGYLFFHNSELMS 662

Query: 519  GQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKK 578
            G + KA +G+GNK  ++ V+LRDYG  A + CMN++AKLSARW+ N GFSIGI+DVQP  
Sbjct: 663  GVIDKAIIGDGNKKSMFYVVLRDYGPPAAADCMNKIAKLSARWLANQGFSIGINDVQPGD 722

Query: 579  ELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKAC 638
             L  +K   + + Y  C+  I    +  L  +PGC+  QTLE+ ++ IL++IR+D G+ C
Sbjct: 723  RLRTEKEITVEKGYTDCDETIALSRQNLLPNQPGCNQEQTLESKLSGILSKIRDDVGQVC 782

Query: 639  MGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKE 698
               L   N+PLIMS CGSKGS IN+SQMVACVGQQ + G R PNGF DRSLPHF + +K 
Sbjct: 783  FQELNKYNAPLIMSLCGSKGSKINVSQMVACVGQQIISGSRIPNGFGDRSLPHFAKNSKT 842

Query: 699  PAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYD 758
            P AKGFV NSFYSGLS TEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDL   YD
Sbjct: 843  PPAKGFVGNSFYSGLSPTEFLFHAVSGREGLVDTAVKTAETGYMQRRLMKALEDLVCHYD 902

Query: 759  NSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVS 818
             SVR++GG IVQF YGDDG+DP N+EG S  P+ F R LM  +A  P     +LS  Q  
Sbjct: 903  LSVRDSGGGIVQFRYGDDGLDPPNIEG-SELPVEFSRNLMHSRALIPIENDPFLSRNQWQ 961

Query: 819  EIVEKQL-AAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWD-DKSQILEEVTH 876
            +I++ +      K  CS  F+ +L  F E +   + K +      G D DK  I      
Sbjct: 962  KIIQVETNKKEFKTICSSEFIRALVAFLERELGDVAKPVH-----GRDTDKYAI------ 1010

Query: 877  KTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 936
              +G+T  QL  FI TC ++Y    V+ GTA+GA+GAQSIGEPGTQMTLKTFHFAGVASM
Sbjct: 1011 -KNGVTATQLYHFINTCKTKYIRAVVQPGTAVGAVGAQSIGEPGTQMTLKTFHFAGVASM 1069

Query: 937  NITQGVPRIKEIINGAKRISTPIITAELE-------CNDN----ENAARVVKGRIEKTLL 985
            NIT GVPRIKEIIN +K ISTPII A+L         N      E A+RVVKGRIEKTLL
Sbjct: 1070 NITLGVPRIKEIINASKTISTPIIDAKLAPMVGGYGGNQTRFAAEAASRVVKGRIEKTLL 1129

Query: 986  GQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLD 1045
              + + I+ V+T     IVI +D+ETI+   L +N D ++ +I++ PK+K+    + + D
Sbjct: 1130 EDITEYIQEVITPEEVCIVIKIDLETIRKLQLEVNIDTIRWAIIRAPKLKISDM-VTISD 1188

Query: 1046 FRKLEIFPPV---DKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGE 1102
              +L +  P    D    +  + +LK  LP V+VKG+ TV R VI +  +E R       
Sbjct: 1189 --RLRVVVPRLKNDSINSYIIMQALKRALPKVVVKGLSTVSRAVINDVTEESR------- 1239

Query: 1103 KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHG 1162
               + LLVEG GL+ VMG +G+DG  T SNH+ E  +TLGIEAAR  IID+I  TMK+HG
Sbjct: 1240 ---FNLLVEGYGLKEVMGIDGVDGLNTSSNHVLECLKTLGIEAARQTIIDQILYTMKSHG 1296

Query: 1163 MSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDR 1222
            M+ID+RH+MLLADLM+F+GEVLGITRFGI KM  SVLMLASFEKT DHLF AS   + D+
Sbjct: 1297 MTIDRRHVMLLADLMSFKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFEASFYSKHDK 1356

Query: 1223 IEGVSECIIMGIPMPLGTGILKIRQR-----DAVPPMLKYGAPD 1261
            I+GVSECIIMG+PM LGTG+ K+ Q          P+L + APD
Sbjct: 1357 IQGVSECIIMGVPMSLGTGLFKLVQETNQFVKTKQPLL-FDAPD 1399


>gi|302673160|ref|XP_003026267.1| hypothetical protein SCHCODRAFT_71335 [Schizophyllum commune H4-8]
 gi|300099948|gb|EFI91364.1| hypothetical protein SCHCODRAFT_71335 [Schizophyllum commune H4-8]
          Length = 1402

 Score = 1237 bits (3201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1270 (51%), Positives = 866/1270 (68%), Gaps = 58/1270 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD--RSKV 58
             R   +E +++  L K++    +T A K V CP C   NG VKKA A L IIHD  RSK 
Sbjct: 126  FRRSNLENMQRQALTKAV----NTAARKVVYCPYCAATNGTVKKAGA-LKIIHDKFRSKK 180

Query: 59   TESLQE-----FASAITHTKESKAAVNVAT-YILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
            T    E     FASAI   KE    +N A    LNP+ VL LF+R++D DCE+L L    
Sbjct: 181  TADEMERWKRTFASAIEAQKELAQFLNKAVNEDLNPLKVLDLFRRISDEDCELLGLRPKF 240

Query: 111  -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE+ +   I+VPP+AIRPSV  DG+ SNE+D+T +L  I+ TNA ++Q L +     +
Sbjct: 241  GRPEEFLWQYISVPPVAIRPSVAQDGA-SNEDDLTVKLTEIVFTNALIKQGLAKGAPTPQ 299

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  WE LQ+ VA YINS++ GVP S    RP+ GFVQRLKGKQGRFRGNLSGKRV+++G
Sbjct: 300  FMEQWEFLQLSVAMYINSELPGVP-SQPGQRPIRGFVQRLKGKQGRFRGNLSGKRVDFSG 358

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
            RTVISPDPNL+I EVA+P R+A+ILTYPERV+ HN+E LR+ + NGPD +PGA  +   +
Sbjct: 359  RTVISPDPNLRIDEVAVPERVAKILTYPERVTVHNMEGLRKAVLNGPDVHPGANFVARGE 418

Query: 290  GTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 349
                + +G  R  +A  L  G +V+RH+ DGD+VLFNRQPSLH++SIMCHR ++ PWR+ 
Sbjct: 419  NKKFLKFGN-RKAVAENLAIGDVVERHIIDGDIVLFNRQPSLHKLSIMCHRVKVRPWRSF 477

Query: 350  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFL 409
            R NE VC PYNADFDGDEMN+HVPQTEEARTEAL LM V++NL TP+NG+ ++A+ QDF+
Sbjct: 478  RLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGDPVIAAIQDFI 537

Query: 410  TSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHA 469
            T+S+L++RKDTF+DR AF+ +CCY+ D   ++D+P P ILKP  LWTGKQ+F+VL+RP+ 
Sbjct: 538  TASYLLSRKDTFFDRRAFTQICCYLADANMQIDIPPPTILKPQRLWTGKQIFNVLMRPNR 597

Query: 470  NMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET----MCPNDGFVYFRNSELISGQLGKAT 525
              +V+VN+  K     NK+   + +    IE     +  NDG++   NSE++ G + KAT
Sbjct: 598  KSKVFVNVECK----CNKVEEVKKEHYPAIEKPRNDLMANDGWLVIVNSEIMCGLMDKAT 653

Query: 526  LGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKG 585
            +G+G K  ++ V+LRDYG H  +  MNR+AKL AR++ N+GFS+GI+DV P  EL++KK 
Sbjct: 654  IGSGKKKSIFGVILRDYGPHEAAAAMNRVAKLCARYLANYGFSLGINDVIPGPELTEKKE 713

Query: 586  KLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR 645
             LI + Y  C  KI    +G L+ KPGCD  QTLEA I+ IL+ +RE AG+ CM  L   
Sbjct: 714  DLIEKAYAECLDKIALAKKGGLKNKPGCDQEQTLEAEISSILSNVREKAGQICMRELSRH 773

Query: 646  NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFV 705
            N+PLIM+  GSKGS IN+ QMVACVGQQ + G R P+GF DRSLPHFP+K+KEP +KGFV
Sbjct: 774  NAPLIMATSGSKGSVINVCQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSKEPPSKGFV 833

Query: 706  ANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAG 765
             NSFY+GL ATEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDL+ QYD +VRN+ 
Sbjct: 834  RNSFYTGLVATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLTVRNSA 893

Query: 766  GCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQL 825
              +VQF YGDDG+DPA +EG + +P++F+R  +   A     G R L P +V +++  ++
Sbjct: 894  AGVVQFRYGDDGLDPACLEGDA-QPIDFERAWVHSAAIASRKG-RGLLPFEVMDLMNSEM 951

Query: 826  AAYGKES-CSEAFLNSLRKFFEGQQDKLDKKIKFVED-----------IGWDDK------ 867
            A     S C+  +++S+R F E   +K+ K++  + +             WD++      
Sbjct: 952  AKSKWVSECTTTYMDSIRDFIE---EKVAKRLAILRERRGMYDAMERIDDWDEEMDLSMG 1008

Query: 868  -SQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLK 926
             S   + V    + +TE QL  F+Q  +++Y   R+E G+ +GA+GAQSIGEPGTQMTLK
Sbjct: 1009 ASDADKAVVDNKAKVTEAQLRTFLQIAWTKYVKARIEPGSTVGAVGAQSIGEPGTQMTLK 1068

Query: 927  TFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLG 986
            TFHFAGVASMN+T GVPRIKEIIN +K ISTPII+ +L   D+E +AR+VKGR+EKT+LG
Sbjct: 1069 TFHFAGVASMNVTLGVPRIKEIINASKNISTPIISCKLVTRDSEASARIVKGRLEKTMLG 1128

Query: 987  QVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDF 1046
             +A  ++         I I +DM  IQ   L +  D +K +IV T K+K+KQ+ I VL  
Sbjct: 1129 DIASVLEEAWAPDYTYIGIIVDMRAIQKLQLEMTLDDIKWAIVSTRKLKVKQESIVVLSR 1188

Query: 1047 R-KLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKK 1105
            + +L I+  ++  +  + +  LK  L  V+VKG+ ++ R VI  KEK+  +    G+K  
Sbjct: 1189 KNRLRIY--IEGDEKFYRIRDLKRNLADVVVKGVPSIHRAVINIKEKDDYR----GKKGD 1242

Query: 1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
              LLVEG GLQ  M  EG+ G  T SNH+ EV Q LGIEAAR  II+EI  TMK+H M+I
Sbjct: 1243 KELLVEGYGLQKCMITEGVVGEMTTSNHVIEVAQVLGIEAARRTIINEIQYTMKSHDMNI 1302

Query: 1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
            D RH+MLL D+M+++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+A+  G+ D I G
Sbjct: 1303 DPRHVMLLGDVMSYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAAAYGKSDAIAG 1362

Query: 1226 VSECIIMGIP 1235
            VSE IIMG P
Sbjct: 1363 VSESIIMGNP 1372


>gi|392592712|gb|EIW82038.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Coniophora puteana RWD-64-598 SS2]
          Length = 1407

 Score = 1236 bits (3198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1271 (50%), Positives = 868/1271 (68%), Gaps = 55/1271 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             R P +E +++  L K++    +TMA K V CP C   NG VKKA A L IIHD+ +  +
Sbjct: 126  FRRPNLENIQRQALCKAV----NTMARKVVYCPYCSATNGAVKKAGA-LKIIHDKFRAKK 180

Query: 61   SLQE-------FASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
            +++E       FA A+   KE    +N A +  +NP+  L LFKRM++ DCE+L L    
Sbjct: 181  TVEEMEKWKRSFAPAVEAQKELGIYLNKAVHEDINPLRALDLFKRMSNEDCELLGLKPSF 240

Query: 111  -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE+ I   I+VPP+ IRPSV  DG+ SNE+D+T +L  I+ TNA ++Q L +     +
Sbjct: 241  GRPEQYIWQYISVPPVCIRPSVAQDGA-SNEDDLTVKLTEIVFTNALIKQGLAKGAPIAQ 299

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  WE LQ+ VA YINS++ GVP S    +P+ GFVQRLKGKQGRFRGNLSGKRV+++G
Sbjct: 300  FMEHWEFLQLSVAMYINSELPGVP-SQAGQKPMRGFVQRLKGKQGRFRGNLSGKRVDFSG 358

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY-P 288
            RTVISPDPNL+I EVA+P R+A+ILTYPERV+ HNI+ L+Q ++NG D +PGA  +    
Sbjct: 359  RTVISPDPNLRIDEVAVPERVAKILTYPERVTSHNIDNLKQAVRNGCDVHPGANYVTAGS 418

Query: 289  DGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 348
             G  + L    RN +A  L+ G +V+RH+ +GDVVLFNRQPSLH++SIMCHR ++ PWR+
Sbjct: 419  SGFKKYLKFGNRNAIADGLRIGDVVERHIINGDVVLFNRQPSLHKLSIMCHRVKVRPWRS 478

Query: 349  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDF 408
             R NE VC PYNADFDGDEMN+HVPQTEEARTEAL LM V++NL TP+NGE ++A+ QDF
Sbjct: 479  FRLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGEPVIAAIQDF 538

Query: 409  LTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
            +T+S+LI+R+DTF+DR +F+ +CCY+ DG  ++D+P P I KPV LWTGKQ+F+VL+RP+
Sbjct: 539  ITASYLISRRDTFFDRRSFTQICCYLADGDLQIDIPPPTIWKPVRLWTGKQIFNVLMRPN 598

Query: 469  ANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETM---CPNDGFVYFRNSELISGQLGKAT 525
               +++VN+  K     NK    +  +  R++ +    PNDG++   NSE++ G + KAT
Sbjct: 599  KQSKIFVNVESK----CNKPQDAKAADYPRMKPLPDLSPNDGWLVVVNSEIMCGVMDKAT 654

Query: 526  LGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKG 585
            +G+G K  ++ V+LRDYG H  +  MNR+AKL AR++ N GFS+GI+DV P ++L+ KK 
Sbjct: 655  VGSGKKKSIFGVILRDYGPHEAAAAMNRVAKLCARYLANCGFSLGINDVIPGRKLAAKKD 714

Query: 586  KLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR 645
             L+ + Y  C   I    +GKL+ KPGC+  QTLEA+I+ +L+++R+  G+ CM  L   
Sbjct: 715  DLVEKAYADCLDLIALAKKGKLENKPGCNQEQTLEAMISSVLSKVRDAVGEICMSELSRH 774

Query: 646  NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFV 705
            N+PLIM+  GSKGS IN+SQMVACVGQQ + G+R P+GF DRSLPHFP+K+KEP +KGFV
Sbjct: 775  NAPLIMATSGSKGSVINVSQMVACVGQQIIAGKRVPDGFQDRSLPHFPKKSKEPPSKGFV 834

Query: 706  ANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAG 765
             NSFYSGL  TEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDL+ QYD SVR A 
Sbjct: 835  RNSFYSGLLPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRTAT 894

Query: 766  GCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQL 825
            G +VQF YGDDG+DPA +EG + +P++FDR      +    +G   L P Q+ EIV K+L
Sbjct: 895  GGVVQFRYGDDGLDPACLEGDA-QPIDFDRSWSHASSIGGRSGLGLL-PFQILEIVRKEL 952

Query: 826  -AAYGKESCSEAFLNSLRKFF--------------EGQQDKLDKKIKFVEDIGWD-DKSQ 869
                 K  C+ A+  ++  F                G  + L++  ++ ED+      S+
Sbjct: 953  DTPRFKTECTAAYRATIEGFLMDKVVLRMAQIRKSHGMFEALERPYEWDEDMDLSLGASK 1012

Query: 870  ILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFH 929
                +    + +TE QL  F++  +S+Y   ++E G+ +GA+GAQSIGEPGTQMTLKTFH
Sbjct: 1013 SERAIVDNHTKVTEAQLRAFLELSWSKYVRAKIEPGSTVGAVGAQSIGEPGTQMTLKTFH 1072

Query: 930  FAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVA 989
            FAGVASMN+T GVPRIKEIIN AK ISTPII+ +L  +D+E +AR+VKGR+EKT LG VA
Sbjct: 1073 FAGVASMNVTLGVPRIKEIINAAKAISTPIISCKLVTSDSEPSARIVKGRLEKTHLGDVA 1132

Query: 990  KSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR-K 1048
              ++         I + +DM+ I+   L +  D +K +IV   K+K+KQ+ I V+  R +
Sbjct: 1133 SLLEEAWAPEYTYIGVIVDMDAIRKLQLELTLDDIKWAIVAARKLKIKQESITVIPRRSR 1192

Query: 1049 LEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRL 1108
            L I+  +D    ++ L  LK +L  V+VKG+ T+ R VI  KEK+  K    G+K    L
Sbjct: 1193 LRIY--IDGPDKYYRLRELKRLLSDVVVKGVSTISRAVINIKEKDDAK----GKKGDKEL 1246

Query: 1109 LVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKR 1168
            LVEG GLQ VM  EGI G  T SNH+ E  Q LGIEAAR  II+EI  TM AHGM+ID R
Sbjct: 1247 LVEGYGLQKVMITEGIVGEHTTSNHVIETSQVLGIEAARRTIINEIQTTMSAHGMTIDPR 1306

Query: 1169 HMMLLADLMTFR----GEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIE 1224
            H+MLL D+M+++    GEVLGITRFG+ KM  SVLMLASFEKT DHLF+A+  G++D I 
Sbjct: 1307 HVMLLGDIMSYKACCSGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAAAFGKNDSIA 1366

Query: 1225 GVSECIIMGIP 1235
            GVSE IIMG P
Sbjct: 1367 GVSESIIMGNP 1377


>gi|395330745|gb|EJF63128.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Dichomitus squalens LYAD-421 SS1]
          Length = 1404

 Score = 1235 bits (3195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/1275 (50%), Positives = 867/1275 (68%), Gaps = 60/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             R P +E L++ +L K+++     +A K V CP C   NG+VKKA A L IIHD+ +  +
Sbjct: 126  FRRPNLENLQRLNLCKAVL----ALARKTVYCPYCSATNGVVKKAGA-LKIIHDKFRAKK 180

Query: 61   SLQE-------FASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
            + +E       F  A+   KE    +N A +  LNP+ VL LFKR+++ DCE+L L    
Sbjct: 181  TAEEMEKWKRTFGPAVEAQKELGMYINKAVHEDLNPLKVLDLFKRISNEDCELLGLRPEF 240

Query: 111  -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE+ I   I+VPP+AIRPSV  DG+ SNE+D+T +L  I+ +NA ++Q L++     +
Sbjct: 241  GRPEQFIWQYISVPPVAIRPSVAQDGA-SNEDDLTVKLTEIVFSNALIKQGLLKGAPTAQ 299

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  WE LQ+ VA YINS++ GVP  M   +P+ GF QRLKGKQGRFRGNLSGKRV+++G
Sbjct: 300  FMEQWEFLQLSVAMYINSELPGVPSQMG-QKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 358

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY-P 288
            RTVISPDPNL+I EVA+P R+A+ILTYPERV+ HNI++L++ ++NG D +PGA  +    
Sbjct: 359  RTVISPDPNLRIDEVAVPERVAKILTYPERVTAHNIDRLKKAVRNGCDVHPGANYVTAGS 418

Query: 289  DGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 348
            +G  + L    R  +A  L+ G IV+RH+ DGD+ LFNRQPSLH++SIMCHR ++ PWR+
Sbjct: 419  NGFKKYLKFGNRTAIADGLRVGDIVERHVIDGDIALFNRQPSLHKLSIMCHRIKVRPWRS 478

Query: 349  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDF 408
             R NE VC PYNADFDGDEMN+HVPQTEEARTEAL LM V++NL TP+NGE ++A+ QDF
Sbjct: 479  FRLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGEPVIAAIQDF 538

Query: 409  LTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
            +T+SFL++R+DTF+DR  F+ +C Y GD   ++D+P P I +PV LWTGKQ+F+VL+RP+
Sbjct: 539  ITASFLLSRRDTFFDRRQFTQICSYFGDADLQIDIPPPTIWRPVRLWTGKQIFNVLMRPN 598

Query: 469  ANMRVYVNLTVK---EKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKAT 525
               RV+VN+  K   E+    K     G        + PNDG++   NSE++ G + KAT
Sbjct: 599  RKSRVFVNVESKCNKEEKADTKCYPWIGKPA---PDLSPNDGWLVIVNSEIMCGVMDKAT 655

Query: 526  LGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKG 585
            +G+G K  ++ V++RDYG H  +  MNR+AKL AR++ N GFS+GI+DV P   LSDKK 
Sbjct: 656  VGSGKKKSVFGVIMRDYGPHEAAAAMNRVAKLCARYLANFGFSLGINDVIPGPVLSDKKD 715

Query: 586  KLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR 645
             ++   Y  C   I    +G L+ KPGCD  QTLEA I+ +L+ +R + G+ CM  L   
Sbjct: 716  SMVEAAYAACEKLIIRAKKGLLENKPGCDQEQTLEAEISKVLSDVRGNVGEICMKELSRH 775

Query: 646  NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFV 705
            N+PLIM+ CGSKGS IN+SQMVACVGQQ + G R P+GF DRSLPHFP+K+++P +KGFV
Sbjct: 776  NAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSRDPPSKGFV 835

Query: 706  ANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAG 765
             NSFY+GL+ TEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDL   YD+SVRNA 
Sbjct: 836  RNSFYTGLTPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAV 895

Query: 766  GCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQL 825
            G +VQF YGDDG+DPA +EG + +P+ ++R  +    +  P   R L P ++ + V++ L
Sbjct: 896  GGVVQFRYGDDGLDPACLEGDA-QPVEYERAWIHA-CSVAPRSTRGLLPFEIMDHVDRAL 953

Query: 826  AAYGKES-CSEAFLNSLRKF------------------FEG--QQDKLDKKIKFVEDIGW 864
            A     S C+ A++ ++RKF                  FE   ++++ D          +
Sbjct: 954  ATRRFTSECTAAYIATIRKFISENIAQKLGEVRKAHGMFEALEREEEWDADTDLSMGASY 1013

Query: 865  DDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMT 924
             DK  +  +V      +TE+QL++F+  C+++Y   ++E G+ +GA+GAQSIGEPGTQMT
Sbjct: 1014 ADKIAVDNKVK-----VTEEQLKLFLDICWTKYVKAKIEPGSTVGAVGAQSIGEPGTQMT 1068

Query: 925  LKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTL 984
            LKTFHFAGVASMN+T GVPRIKEIIN AK ISTPII+ +L   D+E +AR+VKGR+E+T 
Sbjct: 1069 LKTFHFAGVASMNVTLGVPRIKEIINAAKAISTPIISCKLVTADSEASARIVKGRLERTH 1128

Query: 985  LGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL 1044
            +G +A  ++         I I +D +TIQD  L +  D +K +IV   K+K+KQ+ I ++
Sbjct: 1129 IGDIASILEEAWAPEYTYIGIIVDAKTIQDLQLELTLDDIKWAIVAARKLKIKQESITII 1188

Query: 1045 DFR-KLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEK 1103
              + +L I+  +D    ++ L  LK  LP V+VKG+ T+ R +I  KE +  +    G+K
Sbjct: 1189 PRKNRLRIY--IDGPDKYYRLRELKRALPDVVVKGVPTIRRAIINIKEGDDHR----GKK 1242

Query: 1104 KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGM 1163
                LLVEG GLQ VM  +GI G +T SNH+ EV Q LGIEAAR  II+EIN TMK+HGM
Sbjct: 1243 GDKELLVEGYGLQKVMTTQGIVGEQTTSNHVIEVAQVLGIEAARKTIINEINYTMKSHGM 1302

Query: 1164 SIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRI 1223
            SID RH+MLL D+M+++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+AS  G+ D I
Sbjct: 1303 SIDPRHVMLLGDVMSYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDASAYGKTDAI 1362

Query: 1224 EGVSECIIMGIPMPL 1238
             GVSE IIMG P  +
Sbjct: 1363 AGVSESIIMGNPAAM 1377


>gi|392569146|gb|EIW62320.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Trametes versicolor FP-101664 SS1]
          Length = 1403

 Score = 1235 bits (3195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 644/1278 (50%), Positives = 870/1278 (68%), Gaps = 67/1278 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             R P +E L++  L+KS+    + +A K V CP C   NG VKKA A L IIHD+ +  +
Sbjct: 126  FRRPNLENLQRMTLVKSV----NALARKTVYCPYCAATNGTVKKAGA-LKIIHDKFRAKK 180

Query: 61   SLQE-------FASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
            + +E       FA AI   KE    VN A +  LNP+ VL LFKR++D DCE+L L    
Sbjct: 181  TAEEMEKWKRTFAPAIEAQKELGMYVNKAIHEDLNPLKVLDLFKRISDEDCELLGLRPEY 240

Query: 111  -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE+ I   I+VPP+AIRPSV  DG+ SNE+D+T +L  I+ +NA ++Q LV+     +
Sbjct: 241  GRPEQYIWQYISVPPVAIRPSVAQDGA-SNEDDLTVKLTEIVFSNALIKQGLVKGAPTAQ 299

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  WE LQ+ VA YINS++ GVP S    +P+ GF QRLKGKQGRFRGNLSGKRV+++G
Sbjct: 300  FMEQWEFLQLSVAMYINSELPGVP-SQLGQKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 358

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY-P 288
            RTVISPDPNL+I EVA+P R+A+ILTYPERV+ HNI++L++ ++NG D +PGA  +    
Sbjct: 359  RTVISPDPNLRIDEVAVPERVAKILTYPERVTGHNIDRLKKAVRNGCDVHPGANYVTAGS 418

Query: 289  DGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 348
            +G  + L    R  +A  L+ G IV+RH+ DGD+ LFNRQPSLH++SIMCHR ++ PWR+
Sbjct: 419  NGFKKYLKFGNRTAIADGLRIGDIVERHVIDGDIALFNRQPSLHKLSIMCHRIKVRPWRS 478

Query: 349  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDF 408
             R NE VC PYNADFDGDEMN+HVPQTEEARTEAL LM V++NL TP+NGE ++A+ QDF
Sbjct: 479  FRLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGEPVIAAIQDF 538

Query: 409  LTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
            +T+SFL++R+DTF+DR  F+ +C Y  D   ++D+P PAI KPV LWTGKQ+F+VL+RP+
Sbjct: 539  ITASFLLSRRDTFFDRRQFTQICSYFADADLQIDIPPPAIWKPVRLWTGKQVFNVLMRPN 598

Query: 469  ANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET---MCPNDGFVYFRNSELISGQLGKAT 525
               +V+VN+  K     NK  + +     R+     + PNDG++   NSE++ G + KAT
Sbjct: 599  RQSKVFVNVESK----CNKEDKPQAACYPRMRPAPDLSPNDGWLVIVNSEIMCGVMDKAT 654

Query: 526  LGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKG 585
            +G+G K  ++ V++RDYG H  +  MNR+AKL AR++ N GFS+GI+DV P   LS KK 
Sbjct: 655  VGSGKKKSVFGVIMRDYGPHEAAAAMNRVAKLCARYLANIGFSLGINDVIPGPVLSGKKD 714

Query: 586  KLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR 645
             ++ + Y  C   I    +G L+ KPGCD  QTLEA I+ +L+ +R + G+ CM  L   
Sbjct: 715  SMVEDAYAACERLIIRAKKGLLENKPGCDQEQTLEAEISKVLSDVRGNVGEICMKELSRH 774

Query: 646  NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFV 705
            N+PLIM+ CGSKGS IN+SQMVACVGQQ + G R P+GF DRSLPHFP+K+++P +KGFV
Sbjct: 775  NAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSRDPPSKGFV 834

Query: 706  ANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAG 765
             NSFY+GL+ TEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDL   YD+SVRNA 
Sbjct: 835  RNSFYTGLTPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAV 894

Query: 766  GCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQ--RYLSPQQVSEIVEK 823
            G +VQF YGDDG+DPA +EG + +P++++R     +  C  A +  R L P ++ E V+ 
Sbjct: 895  GGVVQFRYGDDGLDPACLEGDA-QPVDYERAW---RHACSLASRAPRGLLPYEIIEFVDH 950

Query: 824  QLAA--YGKESCSEAFLNSLRKF------------------FEG--QQDKLDKKIKFVED 861
            +L+   Y  E C+ A+L ++R F                  FE   ++D+ D        
Sbjct: 951  ELSTRKYTTE-CTAAYLATIRSFISENIAQRLGEVRKRHGMFEALEREDEWDADTDLTMG 1009

Query: 862  IGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGT 921
                DK+ +  ++      +TE+QL +F+  C+++Y   ++E G+ +GA+GAQSIGEPGT
Sbjct: 1010 ASDADKAAVDNKIK-----VTEEQLRLFLDVCWTKYVKAKIEPGSTVGAVGAQSIGEPGT 1064

Query: 922  QMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIE 981
            QMTLKTFHFAGVASMN+T GVPRIKEIIN AK ISTPII+ +L   D+E +AR+VKGR+E
Sbjct: 1065 QMTLKTFHFAGVASMNVTLGVPRIKEIINAAKAISTPIISCKLVAYDSEASARIVKGRLE 1124

Query: 982  KTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHI 1041
            +T +G +A  ++         I + +DM+TIQD  L +  D +K +IV   K+K+KQ+ I
Sbjct: 1125 RTHVGDIASVLEEAWAPEYTYIGVIVDMKTIQDLQLELTLDDIKWAIVGARKLKIKQESI 1184

Query: 1042 KVLDFR-KLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKEN 1100
             V+  + +L I+  VD +  ++ L  LK  LP V+VKG+ T+ R +I  KE    +    
Sbjct: 1185 TVIPRKNRLRIY--VDGADKYYRLRELKRALPDVVVKGVPTIRRAIINIKENNDHR---- 1238

Query: 1101 GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKA 1160
            G+K    LLVEG GLQ VM  +GI G +T SNH+ E+ Q LGIEAAR  II+EI  TM++
Sbjct: 1239 GKKGDKELLVEGYGLQKVMTTQGIVGEQTTSNHVIEIAQVLGIEAARRTIINEIQYTMQS 1298

Query: 1161 HGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRD 1220
            HGMSID RH+MLL D+M+++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+AS  G+ 
Sbjct: 1299 HGMSIDPRHVMLLGDVMSYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDASAYGKT 1358

Query: 1221 DRIEGVSECIIMGIPMPL 1238
            D I GVSE IIMG P  +
Sbjct: 1359 DSIAGVSESIIMGNPAAM 1376


>gi|409049560|gb|EKM59037.1| hypothetical protein PHACADRAFT_169499 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1403

 Score = 1234 bits (3193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/1268 (50%), Positives = 867/1268 (68%), Gaps = 53/1268 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             R P +E +++  L+K++    + +A K V CP C   NG VKKA A L IIHD+ +  +
Sbjct: 126  FRRPSLENIQRQALIKAV----NALARKTVYCPYCASTNGAVKKASA-LKIIHDKFRAKK 180

Query: 61   SLQE-------FASAITHTKESKAAVNVATYI-LNPVNVLFLFKRMTDTDCEVLYLS--- 109
            ++ E       F+SAI   K+    VN A +  LNP+ VL LFKR++D DCE+L L    
Sbjct: 181  TVDEMEKWKKTFSSAIEAQKDLAMYVNRAVHEELNPLKVLDLFKRISDEDCELLGLRPEF 240

Query: 110  ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE+ I   I+VPP+AIRPSV  DG+ SNE+D+T +L  I+ TNA ++Q L +     +
Sbjct: 241  ARPEEYIWQYISVPPVAIRPSVAQDGA-SNEDDLTVKLTEIVFTNALIKQGLAKGAPTAQ 299

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  W+ LQ+ +A YINS++ GVP  M   +P+ GF QRLKGKQGRFRGNLSGKRV+++G
Sbjct: 300  FMEQWDFLQLSIAMYINSELPGVPSQMG-QKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 358

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY-P 288
            RTVISPDPNL+I EVA+P R+A+ILTYPERV+ HN+E L++ I+NG D +PGA  +    
Sbjct: 359  RTVISPDPNLRIDEVAVPERVAKILTYPERVTQHNLEILKKAIRNGCDVHPGANYVTAGS 418

Query: 289  DGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 348
             G  + L    RN +A  L+ G IV+RH+ DGD+VLFNRQPSLH++SIMCHR ++ PWR+
Sbjct: 419  SGFKKFLKFGNRNAIADGLRVGDIVERHIVDGDIVLFNRQPSLHKLSIMCHRVKVRPWRS 478

Query: 349  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDF 408
             R NE VC PYNADFDGDEMN+HVPQTEEARTEAL LM V++NL TP+NGE ++A+ QDF
Sbjct: 479  FRLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGEPVIAAIQDF 538

Query: 409  LTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
            +T+SFL++R+D F+DR  F+ +C Y+ D   ++D+P P ILKP  LWTGKQ+F+VL+RP+
Sbjct: 539  ITASFLLSRRDRFFDRCQFTQICSYLADADLQIDIPPPTILKPQRLWTGKQIFNVLMRPN 598

Query: 469  ANMRVYVNLTVKEKTYSNKLIRTEGDEEIR---IETMCPNDGFVYFRNSELISGQLGKAT 525
             + RV VN+    ++  NK+ + +     R   ++ M PNDG++   NSE++ G + KAT
Sbjct: 599  RHSRVRVNV----ESRCNKVEKPDPKAYPRMTPVDDMSPNDGWLVIVNSEIMCGVMDKAT 654

Query: 526  LGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKG 585
            +G+G K  ++ V+LRDYG H  +  M RLAKL AR++ N+GFS+GI+DV P   L+ +K 
Sbjct: 655  VGSGKKKSIFGVILRDYGPHEAATAMGRLAKLCARYLANYGFSLGINDVIPGPILAAQKE 714

Query: 586  KLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR 645
             ++ + Y  C+  I    +G L+ KPGCD  QTLEA+I+ +L+ +RE  G+ CM  L   
Sbjct: 715  SMVQKAYAECDDLIARAKKGLLENKPGCDQEQTLEAMISSVLSNVREKVGEICMKELSRH 774

Query: 646  NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFV 705
            N+PLIM+  GSKGS IN+SQMVACVGQQ + G R P+GF DRSLPHFP+K++EP +KGFV
Sbjct: 775  NAPLIMATSGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSREPPSKGFV 834

Query: 706  ANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAG 765
             NSFY+GL+ TEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDL   YD+SVRNA 
Sbjct: 835  RNSFYTGLTPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAV 894

Query: 766  GCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQL 825
            G +VQF YGDDG+DPA +EG + +P+ + R      A    +  R L P ++ E V ++L
Sbjct: 895  GGVVQFRYGDDGLDPACLEGDA-QPVEYLRAWSHASAIASRSS-RGLFPFEILEFVNQEL 952

Query: 826  A--AYGKESCSEAFLNSLRKFFE--------------GQQDKLDKKIKFVEDIGWD-DKS 868
            A   +  E CS A+L+++R+F                G  + L+++ ++ E        S
Sbjct: 953  AKPKFTGE-CSAAYLSTIREFVSEHIAQRLANIRKSRGMFEALEREPEWSEHTDLSMGAS 1011

Query: 869  QILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTF 928
            +  + +    S +TE Q+  F+  C+++Y   ++E G+ +GA+GAQSIGEPGTQMTLKTF
Sbjct: 1012 EADKVIVDNRSKVTEDQVRTFLAICWTKYVKAKIEPGSTVGAVGAQSIGEPGTQMTLKTF 1071

Query: 929  HFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQV 988
            HFAGVASMN+T GVPRIKEIIN AK ISTPII+ +L  +DNE +AR+VKGR+EKT L  V
Sbjct: 1072 HFAGVASMNVTLGVPRIKEIINAAKVISTPIISCKLVTSDNEASARIVKGRLEKTHLRDV 1131

Query: 989  AKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR- 1047
            A  ++         I + +DM+TIQD  L +  D +K +IV   K+K+KQ+ I V+  + 
Sbjct: 1132 AGVLEEAWAPEYTYIGVIVDMKTIQDLQLELTLDDIKWAIVVAKKLKIKQESITVIPKKN 1191

Query: 1048 KLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYR 1107
            +L I+  VD    ++ L  LK  LP V+VKG+ T+ R +I  K+K+  +    G+K    
Sbjct: 1192 RLRIY--VDGPDKYYRLRELKRALPEVVVKGVPTIRRAIINIKDKDDAR----GKKGDKE 1245

Query: 1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
            LLVEG GLQ VM  +GI G  T SNH+ E  Q LGIEAAR  II+EI  TM +HGMSID 
Sbjct: 1246 LLVEGYGLQKVMTTQGIVGEHTTSNHVIETAQVLGIEAARRAIINEIQYTMASHGMSIDP 1305

Query: 1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
            RH+MLL D+MT++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+AS  G+ D I GVS
Sbjct: 1306 RHVMLLGDVMTYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDASALGKTDSILGVS 1365

Query: 1228 ECIIMGIP 1235
            E IIMG P
Sbjct: 1366 ESIIMGNP 1373


>gi|403416877|emb|CCM03577.1| predicted protein [Fibroporia radiculosa]
          Length = 1403

 Score = 1234 bits (3192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/1266 (50%), Positives = 861/1266 (68%), Gaps = 49/1266 (3%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             R P +E +++  L K++    +T+A KAV CP C   NG VKKA A L IIHD+ +  +
Sbjct: 126  FRRPNLENIQRQALSKAV----NTLARKAVYCPYCSSTNGTVKKAGA-LKIIHDKFRAKK 180

Query: 61   SLQE-------FASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
            +  E       F SA+   KE    +N A +  LNP+ VL LFKR++D DCE+L L    
Sbjct: 181  TADEMEKWKTTFTSAVEAQKELGMYLNKAVHEDLNPLKVLNLFKRISDEDCELLGLRPAH 240

Query: 111  -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE+ +   I+VPP+ IRPSV  DG+ SNE+D+T +L  I+ TNA ++Q L +     +
Sbjct: 241  GRPEEYVWQYISVPPVCIRPSVAQDGA-SNEDDLTVKLTEIVFTNALIKQGLAKGAPTAQ 299

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  W+ LQ+ VA YINS++ GVP  M   +P+ GF QRLKGKQGRFRGNLSGKRV+++G
Sbjct: 300  FMEQWDFLQLSVAMYINSELPGVPSQMG-QKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 358

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY-P 288
            RTVISPDPNL+I EVA+P R+++ILTYPERV+ HNI+ L++ ++NG D +PGA  +    
Sbjct: 359  RTVISPDPNLRIDEVAVPERVSKILTYPERVTAHNIDMLKKAVRNGCDVHPGANYVTAGS 418

Query: 289  DGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 348
            +G  + L    RN +A  L+ G +V+RH+ DGDVVLFNRQPSLH++SIMCHR ++ PWR+
Sbjct: 419  NGFKKYLKFGNRNAIADGLRIGDVVERHIIDGDVVLFNRQPSLHKLSIMCHRVKVRPWRS 478

Query: 349  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDF 408
             R NE VC PYNADFDGDEMN+HVPQTEEARTEAL LM V++NL TP+NGE ++A+ QDF
Sbjct: 479  FRLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGEPVIAAIQDF 538

Query: 409  LTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
            +T+SFL++R+DTF+DR  F+ +C Y GD   ++D+P P I KPV LWTGKQ+F+VL+RP+
Sbjct: 539  ITASFLLSRRDTFFDRRQFTQICSYFGDANMQIDIPPPTIWKPVRLWTGKQIFNVLMRPN 598

Query: 469  ANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET---MCPNDGFVYFRNSELISGQLGKAT 525
             +  V VN+  K     NK  + +     R+     + PNDG++   NSE++ G + KAT
Sbjct: 599  KSSNVMVNVESK----CNKQEKPDPKCYPRMNAAPDLSPNDGWLVIVNSEIMCGVMDKAT 654

Query: 526  LGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKG 585
            +G+G K  ++ +++RDYG H  +  MNRLAKL AR++ N+GFS+GI+DV P  +L+++K 
Sbjct: 655  VGSGKKKSVFGIIMRDYGPHEAAAAMNRLAKLCARYLANYGFSLGINDVIPGPKLANEKD 714

Query: 586  KLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR 645
            KL+   Y  C   I    +G L+ KPGCD  QTLEA+I+ +L+++R+  G+ C+  L   
Sbjct: 715  KLVETAYAECQDLIMRAKKGLLENKPGCDQEQTLEAMISGVLSKVRDKVGEICLKELSRH 774

Query: 646  NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFV 705
            N+PLIM+ CGSKGS IN++QMVACVGQQ + G R P+GF DRSLPHFP+K++EP +KGFV
Sbjct: 775  NAPLIMATCGSKGSVINVAQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSREPPSKGFV 834

Query: 706  ANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAG 765
             NSFY+GLS TEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDL   YD+SVRNA 
Sbjct: 835  RNSFYTGLSPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAV 894

Query: 766  GCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQL 825
            G +VQF YGDDG+DPA +EG + +P+ + R      ++      R L P ++ EIV+++L
Sbjct: 895  GGVVQFRYGDDGLDPACLEGDA-QPVEYLRAWSHA-SSIESRRARGLLPFEIMEIVDREL 952

Query: 826  AAYGKES-CSEAFLNSLRKFFEGQQDKLDKKIK--------FVEDIGWDDKSQIL----- 871
                  S C+ A+L ++R F      +   +I+           D  WD  + +      
Sbjct: 953  LRRKFTSECTAAYLATIRGFVSEHVAQRLAEIRKSHGMFEALERDGEWDADTDLSLGASA 1012

Query: 872  --EEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFH 929
              + V      +TE QL  F++ C+++Y   ++E G+ +GA+GAQSIGEPGTQMTLKTFH
Sbjct: 1013 ANKAVVDNKLKVTEVQLLRFLEICWTKYVKAKIEPGSTVGAVGAQSIGEPGTQMTLKTFH 1072

Query: 930  FAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVA 989
            FAGVASMN+T GVPRIKEIIN AK ISTPII+ +L   DNE +AR+VKGR+EKT LG VA
Sbjct: 1073 FAGVASMNVTLGVPRIKEIINAAKSISTPIISCKLVTADNEASARIVKGRLEKTHLGDVA 1132

Query: 990  KSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKL 1049
              ++         I I +DM+TIQD  L +  D +K  IV   K+K+KQ+ I ++  RK 
Sbjct: 1133 SVLEEAWAPEYTYIGIIVDMKTIQDLQLEMTLDDIKWGIVAAKKLKIKQEAITIIP-RKN 1191

Query: 1050 EIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLL 1109
             +   VD    ++ L  LK  LP V+VKG+ T+ R +I  KE +  +    G+K    LL
Sbjct: 1192 RLRVYVDGQDKYYRLRELKRALPDVVVKGVPTIRRAIINIKEDDDHR----GKKGDKELL 1247

Query: 1110 VEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRH 1169
            VEG GLQ VM  +GI G +T SNHI EV Q LGIEAAR  II+EI  TM +HGMSID RH
Sbjct: 1248 VEGYGLQKVMVTQGIIGEQTTSNHIIEVAQVLGIEAARRTIINEIQYTMSSHGMSIDPRH 1307

Query: 1170 MMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSEC 1229
            +MLL D+M+++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+A+  G+ D I GVSE 
Sbjct: 1308 VMLLGDVMSYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAAAYGKTDSIAGVSES 1367

Query: 1230 IIMGIP 1235
            IIMG P
Sbjct: 1368 IIMGNP 1373


>gi|169869303|ref|XP_001841218.1| DNA-directed RNA polymerase III largest subunit [Coprinopsis cinerea
            okayama7#130]
 gi|116497686|gb|EAU80581.1| DNA-directed RNA polymerase III largest subunit [Coprinopsis cinerea
            okayama7#130]
          Length = 1403

 Score = 1233 bits (3191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 649/1266 (51%), Positives = 855/1266 (67%), Gaps = 50/1266 (3%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             R P +E + +  L K++    ++MA K V CP C   NG VK A A L IIHD+ +  +
Sbjct: 126  FRRPNLENIHRQALFKAV----NSMARKVVYCPYCSATNGAVKTAGA-LKIIHDKFRAKK 180

Query: 61   SLQE-------FASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
            +  E       F +A+   KE    +N A    LNP+ VL LF+R++D DCE+L L    
Sbjct: 181  TADELEKWKKTFVAAVEAQKELGMYLNKAVVEDLNPLKVLDLFRRISDEDCELLGLRPEW 240

Query: 111  -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE+ I   ++VPP+ IRPSV  DG+ SNE+DIT +L  I+ TNA ++Q L +     +
Sbjct: 241  GRPEQFIWQYLSVPPVCIRPSVAQDGA-SNEDDITVKLTEIVFTNALIKQGLSKGAPTPQ 299

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  WE LQ+ VA YINS++ GVP  M   +P+ GFVQRLKGKQGRFRGNLSGKRV+++G
Sbjct: 300  FMEQWEFLQLSVAMYINSELPGVPSQMG-QKPIRGFVQRLKGKQGRFRGNLSGKRVDFSG 358

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
            RTVISPDPNL+I EVA+P R+A+ILTYPERV+ HNIE LRQ I+NGPD +PGA  +   +
Sbjct: 359  RTVISPDPNLRIDEVAVPERVAKILTYPERVTMHNIETLRQAIRNGPDVHPGANYVARGE 418

Query: 290  GTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 349
                + +G  R  +A  L  G IV+RH+ DGD+VLFNRQPSLH++SIMCHRA+I PWRT 
Sbjct: 419  TKKFLKFGN-RQAIADNLAIGDIVERHVIDGDIVLFNRQPSLHKLSIMCHRAKIRPWRTF 477

Query: 350  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFL 409
            R NE VC PYNADFDGDEMN+HVPQTEEARTEAL LM V++NL TP+NGE ++++ QDF+
Sbjct: 478  RLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGEPVISAIQDFI 537

Query: 410  TSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHA 469
            T+SFLI+RKD F+DR  F+ +CCY+GD    +D+P P I KPV+LWTGKQ+F+VL+RP+ 
Sbjct: 538  TASFLISRKDRFFDRREFTQICCYLGDADLHIDIPPPTIWKPVQLWTGKQIFNVLMRPNK 597

Query: 470  NMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNG 529
              ++++N+  K + +     +           + PNDG++   NSE++ G + KAT+G+G
Sbjct: 598  QSKIFINVESKCQKWEEAKPQNFPPRITLQPDLSPNDGWLVVVNSEIMCGVMDKATVGSG 657

Query: 530  NKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLIS 589
             K  ++ V+LRDYG H  +  M RLAKL AR++ N+GFS+GI+DV P   LS +K  L+ 
Sbjct: 658  KKKSIFGVILRDYGPHEAAIAMGRLAKLCARYLANYGFSLGINDVIPGPVLSSQKDVLVE 717

Query: 590  ENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPL 649
            + Y  C   I    +GKL+ KPGC+  QTLEA+I+ +L+++RE+ G+ CM  L   N+PL
Sbjct: 718  KAYADCEDLIALAKKGKLENKPGCNQEQTLEAMISSVLSKVREEVGQICMKELSRHNAPL 777

Query: 650  IMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSF 709
            IM+ CGSKGS IN+SQMVACVGQQ + G R PNGF DRSLPHFP+K+K P +KGFV NSF
Sbjct: 778  IMATCGSKGSVINVSQMVACVGQQIIAGHRVPNGFQDRSLPHFPKKSKTPPSKGFVRNSF 837

Query: 710  YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIV 769
            YSGL ATEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDL+ QYD SVRN+ G +V
Sbjct: 838  YSGLVATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNSTGGVV 897

Query: 770  QFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAA-Y 828
            QF YGDDG+DPA +EG + +PL+ DR     +A       R L P ++ +IVE  LA+  
Sbjct: 898  QFQYGDDGLDPACLEGDA-QPLDMDRSWRHAQARS-NRKTRGLLPFEIIQIVETTLASPR 955

Query: 829  GKESCSEAFLNSLRKFF-----------EGQQDKLDKKIKFVEDIGWDDK-------SQI 870
              +SC  A+ +++R F              + D  D   K  E   WD++       S+ 
Sbjct: 956  FTQSCLPAYCDAVRDFIVKKVASRVASVRAKHDMFDALEKPEE---WDEEMDLTLGASEA 1012

Query: 871  LEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHF 930
             + V    + +TE  L +F+  C+ RY   R+E G+ +GA+GAQSIGEPGTQMTLKTFHF
Sbjct: 1013 CKRVVDNKAKVTESHLRIFLDICWERYVKARIEPGSTVGAVGAQSIGEPGTQMTLKTFHF 1072

Query: 931  AGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAK 990
            AGVASMN+T GVPRIKEIIN AK ISTPII+ +L   D+E +AR+VKGR+EKTLLG V  
Sbjct: 1073 AGVASMNVTLGVPRIKEIINAAKAISTPIISCKLVTPDSEPSARIVKGRLEKTLLGDVVS 1132

Query: 991  SIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR-KL 1049
             ++         I I +D++ IQ   L +  D +K +IV   K+K+KQ+ I ++  + +L
Sbjct: 1133 VLEEAWAPDYTYIGIIVDVDAIQKLQLELTLDDIKWAIVAAKKLKIKQESITIIPRKNRL 1192

Query: 1050 EIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLL 1109
             I+  VD     + +  L+  L  V+VKG+ T++R +I      K K  + G+K    LL
Sbjct: 1193 RIY--VDGEDKFYRIRELRRGLADVVVKGLPTIQRAII----NIKDKDDDRGKKGDKELL 1246

Query: 1110 VEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRH 1169
            VEG GLQ  M  EG+ G  T SNH+ EV Q LGIEAAR  II+EI  TMK+H M+ID RH
Sbjct: 1247 VEGYGLQKCMITEGVVGEFTTSNHVIEVAQVLGIEAARRTIINEIQYTMKSHDMNIDPRH 1306

Query: 1170 MMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSEC 1229
            +MLL D+MT++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+AS  G+ D I GVSE 
Sbjct: 1307 VMLLGDVMTYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDASAYGKTDSIAGVSES 1366

Query: 1230 IIMGIP 1235
            IIMG P
Sbjct: 1367 IIMGNP 1372


>gi|449540821|gb|EMD31809.1| hypothetical protein CERSUDRAFT_144684 [Ceriporiopsis subvermispora
            B]
          Length = 1403

 Score = 1232 bits (3188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/1265 (50%), Positives = 859/1265 (67%), Gaps = 47/1265 (3%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             R P +E L++  L+K++    + +A K V CP C   NG VKKA   L IIHD+ +  +
Sbjct: 126  FRRPNLENLQRQSLIKAV----NGLARKTVYCPYCSATNGAVKKA-GTLKIIHDKFRAKK 180

Query: 61   SLQE-------FASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
            +  E       FA AI   KE    +N A +  LNP+ VL LFKR++D DCE+L L    
Sbjct: 181  TADEMEKWKRTFAPAIEAQKELGMYINKAVHEDLNPLKVLDLFKRISDEDCELLGLRPEY 240

Query: 111  -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE+ +   I+VPP+ IRPSV  DG+ SNE+D+T +L  I+ TNA ++Q L +     +
Sbjct: 241  GRPEEYVWQYISVPPVCIRPSVAQDGA-SNEDDLTVKLTEIVFTNALIKQGLAKGAPTAQ 299

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  W+ LQ+ VA YINS++ GVP  M   RP+ GF QRLKGKQGRFRGNLSGKRV+++G
Sbjct: 300  FMEQWDFLQLSVAMYINSELPGVPTQMG-QRPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 358

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
            RTVISPDPNL+I EVA+P R+A++LTYPERV+ HNIE LR+ ++NG D +PGA  +    
Sbjct: 359  RTVISPDPNLRIDEVAVPERVAKVLTYPERVTAHNIEVLRRAVRNGCDVHPGANYVTT-G 417

Query: 290  GTARVLYGKFRNQLAVE--LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
            GT    + KF N+ A+   L+ G IV+RH+ DGD+VLFNRQPSLH++SIMCHR ++ PWR
Sbjct: 418  GTGFKKFLKFGNRAAIADGLRIGDIVERHIIDGDIVLFNRQPSLHKLSIMCHRVKVRPWR 477

Query: 348  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQD 407
            T R NE VC PYNADFDGDEMN+HVPQTEEARTEAL LM V++NL TP+NGE ++A+ QD
Sbjct: 478  TFRLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGEPVIAAIQD 537

Query: 408  FLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRP 467
            F+T+SFL++++D F+DR  F+ +C Y+ D   ++D+P P I KP  LWTGKQ+F+VL+RP
Sbjct: 538  FITASFLLSQRDRFFDRRQFTQICSYLADADLKIDIPPPTIWKPQRLWTGKQIFNVLMRP 597

Query: 468  HANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLG 527
            + + +V VN+  K        +     ++   + + PNDG++   NSE++ G + KAT+G
Sbjct: 598  NRSSKVLVNVESKCAKEEKPNVACYPMKKPAPD-LAPNDGWLVIVNSEIMCGVMDKATVG 656

Query: 528  NGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKL 587
            +G K  ++ V++RDYG H  +  MNR+AK+ ARW+ N GFS+GI+DV P  +LS +K  +
Sbjct: 657  SGKKKSIFGVIMRDYGPHEAAAAMNRVAKVCARWLANFGFSLGINDVIPGPQLSQQKEDM 716

Query: 588  ISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNS 647
            + + Y  C+  I +  +G L+ KPGCD  QTLEA+I+ IL+ +R+  G  CM  L   N+
Sbjct: 717  VMKAYNACDDLIMKAKKGLLENKPGCDQEQTLEAMISSILSNVRDQVGNICMKELSRHNA 776

Query: 648  PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVAN 707
            PL+M+ CGSKGS IN+ QMVACVGQQ + G R P+GF DRSLPHFP+K++EP +KGFV N
Sbjct: 777  PLVMATCGSKGSVINVCQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSREPPSKGFVRN 836

Query: 708  SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
            SFY+GLS TEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDL   YD+SVRNA G 
Sbjct: 837  SFYTGLSPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAVGG 896

Query: 768  IVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAA 827
            +VQF YGDDG+DPA +EG + +P+ F R      ++      R L P ++ E V+++LA 
Sbjct: 897  VVQFRYGDDGLDPACLEGDA-QPVEFLRAWSHA-SSIASRSTRGLLPFEILEFVDRELAN 954

Query: 828  YGKES-CSEAFLNSLRKFF--------------EGQQDKLDKKIKFVEDIGWDDKSQILE 872
                S C  A+L  +R F                G  D L+++ ++ E+      +   +
Sbjct: 955  RRFTSECMPAYLAIVRSFISDHIANKLAEVRRQHGMYDALEREAEWDEETDLSLGASDAD 1014

Query: 873  EVT-HKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 931
            + T    + +TE+QL VF+  C+++Y   ++E G+ +GA+GAQSIGEPGTQMTLKTFHFA
Sbjct: 1015 KATVDNKAKVTEEQLRVFLDICWTKYVKAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFA 1074

Query: 932  GVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKS 991
            GVASMN+T GVPRIKEIIN AK ISTPII+  L   ++E +AR+VKGR+EKTLLG VA  
Sbjct: 1075 GVASMNVTLGVPRIKEIINAAKVISTPIISCRLVTANSEASARIVKGRLEKTLLGDVAAV 1134

Query: 992  IKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR-KLE 1050
            ++         I I +D++TIQD  L +  D +K +IV   K+K+KQ+ I V+  R +L 
Sbjct: 1135 LEEAWAPEYTYIGIIVDVKTIQDLQLELTLDDIKWAIVNAKKLKIKQESITVIPRRNRLR 1194

Query: 1051 IFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLV 1110
            I+  +D    ++ L  LK  LP V+VKG+ T+ R +I  KEK+  +    G K    LLV
Sbjct: 1195 IY--IDGQDKYYRLRELKRTLPDVVVKGVPTIRRAIINIKEKDDVR----GNKGDKELLV 1248

Query: 1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
            EG GLQ VM   GI G  T SNHI EV Q LGIEAAR  II+EI  TM++HGMSID RH+
Sbjct: 1249 EGYGLQKVMTTLGIVGEHTSSNHIVEVCQVLGIEAARQTIINEIQYTMQSHGMSIDPRHV 1308

Query: 1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
            MLL D+MT++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+A+  G+ D I GVSE I
Sbjct: 1309 MLLGDVMTYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAAALGKTDSIAGVSESI 1368

Query: 1231 IMGIP 1235
            IMG P
Sbjct: 1369 IMGNP 1373


>gi|164657764|ref|XP_001730008.1| hypothetical protein MGL_2994 [Malassezia globosa CBS 7966]
 gi|159103902|gb|EDP42794.1| hypothetical protein MGL_2994 [Malassezia globosa CBS 7966]
          Length = 1376

 Score = 1227 bits (3174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 644/1275 (50%), Positives = 842/1275 (66%), Gaps = 63/1275 (4%)

Query: 4    PKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD--RSKVTES 61
            P +E L++    K++    +  A K + CP CG  NG VKKA  VL I+H+  R K TE 
Sbjct: 109  PGLENLQRAQTFKAV----NAAARKMLYCPHCGSTNGTVKKA-GVLKIVHEKFRQKKTEE 163

Query: 62   LQ-----EFASAITH-TKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RP 112
             Q      F++A++    E    +N A   LNP+ VL LF+R++D DCE+L L     RP
Sbjct: 164  EQLEFRKTFSTAVSMGNGELAPHLNKAQEDLNPLRVLDLFRRISDEDCELLALKPQFGRP 223

Query: 113  EKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS-- 170
            E+ I   I VPP+ IRPSV  DG+ +NE+D+T +L  I+ TN  ++  L + +    +  
Sbjct: 224  EEYIWQYICVPPVCIRPSVAQDGA-TNEDDLTVKLTEIVFTNNIIKSGLTKGSKGTTTAQ 282

Query: 171  -LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  W+ LQ+ VA YINS++ GVP  M   +P+ GF QRLKGKQGRFRGNLSGKRV+++G
Sbjct: 283  LVEQWDFLQLSVALYINSEMPGVP-PMSGHKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 341

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARM-IRYP 288
            RTVISPDPNL I E+A+P R+A+ILTYPERV  HNIE +RQ ++NG D +PGA   +   
Sbjct: 342  RTVISPDPNLAIDEIAVPERVAKILTYPERVFAHNIEAMRQAVRNGTDTHPGANYHVNGR 401

Query: 289  DGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
            DG  R L +   R+ +A  L+ G IV+RH+ DGD+VLFNRQPSLH++SIMCHRA+I PWR
Sbjct: 402  DGFKRFLKFPGMRDDIAANLRVGDIVERHIRDGDIVLFNRQPSLHKLSIMCHRAKIRPWR 461

Query: 348  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQD 407
            T R NE VC+PYNADFDGDEMNMHVPQTEEARTEAL LMGV++NL TP+NGE +VA+TQD
Sbjct: 462  TFRLNECVCSPYNADFDGDEMNMHVPQTEEARTEALTLMGVKHNLVTPRNGEPIVAATQD 521

Query: 408  FLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRP 467
            F+T++FL++R+  F+ RA F  +C Y GD    +DLP PAILKPV LWTGKQLFS +IRP
Sbjct: 522  FITAAFLLSRRGRFFTRAQFVQICSYFGDASLHIDLPPPAILKPVRLWTGKQLFSCMIRP 581

Query: 468  HANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLG 527
            +    V VNL  + +T+       E   +  +  M PNDG++  +NSE++ G + KAT+G
Sbjct: 582  NKQSPVLVNLEARCRTF-------EKPRDGHVNEMSPNDGYLVIQNSEVLCGVMDKATVG 634

Query: 528  NGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKL 587
            +G K  ++ V+LRDYG  A    MNRLAK  ARW+ N GFS+GI DV P + L + K + 
Sbjct: 635  DGKKQSVFGVILRDYGPDAAVASMNRLAKTCARWLSNQGFSLGIGDVTPGQHLRETKDRN 694

Query: 588  ISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNS 647
            +   Y  C   I+    GKL+  PGCD  QTLE+ I+ +L+ +R D G+ CM  L   N+
Sbjct: 695  VEIAYRQCRDLIELAKRGKLENLPGCDQEQTLESKISGVLSSVRSDVGEICMTELSRHNA 754

Query: 648  PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVAN 707
             L+MS CGSKGS IN++QMVACVGQQ + G R PNGF DRSLPHFP+K+K+P +KGFV N
Sbjct: 755  ALLMSVCGSKGSKINVAQMVACVGQQIISGSRVPNGFQDRSLPHFPKKSKDPPSKGFVRN 814

Query: 708  SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
            SF+SGL  TEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDLS  YD SVRN+ G 
Sbjct: 815  SFFSGLEPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDFSVRNSEGG 874

Query: 768  IVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAA 827
            +VQFLYGDDG+DPA +EG +  P+ ++R      A       RYL P +V ++V   L+ 
Sbjct: 875  VVQFLYGDDGLDPAELEGNA-LPVEYNRTFRHASAKTADVPSRYLLPYEVMDLVNHLLSQ 933

Query: 828  YGKES-CSEAFLNSLRKFFEGQQDKLDKKIK--------FVEDIGWDDKSQILEEVTHKT 878
               E  C+  +++ +R+F   Q  K   + +           D  WD  + +        
Sbjct: 934  DRFERVCTSKYIDQVREFCYEQVAKRMAETREAYGMYPALERDGDWDVDTDLSLGADDAQ 993

Query: 879  SGITEKQLEV-------FIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 931
              + E ++ V       FI  C+ +Y   ++E G+A+GA+GAQSIGEPGTQMTLKTFHFA
Sbjct: 994  RAVVENKVRVSEATILEFINLCWDKYMRAKIEPGSAVGAVGAQSIGEPGTQMTLKTFHFA 1053

Query: 932  GVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKS 991
            GVASMN+T GVPRIKEIIN AK I+TPII A L    +E AAR+VKGRIEKT LG VA  
Sbjct: 1054 GVASMNVTLGVPRIKEIINAAKVINTPIIAATLVSEKSEQAARIVKGRIEKTYLGDVASV 1113

Query: 992  IKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL---DFRK 1048
            I+   +     I I +D   IQ   L +  D +K +IV  P++K+K++ I VL   D  +
Sbjct: 1114 IEEAWSGTYTYIGIDIDTAAIQKLQLEVTLDDIKRAIVAMPRMKIKEERIIVLPNQDRLQ 1173

Query: 1049 LEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRL 1108
            + I P   +  +++ L  LK  LP V++KGI    R VI++            EK + +L
Sbjct: 1174 IYIHPDEKEKDVYYSLKQLKRQLPKVVIKGIPHASRAVISD------------EKGQRKL 1221

Query: 1109 LVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKR 1168
            LVEG GL+ VM  EG+ G  T +NH+ E+QQ LGIEAAR  I  EI+ TM +HGMSID R
Sbjct: 1222 LVEGYGLREVMTTEGVVGTHTHTNHVMEMQQVLGIEAARSSIYREIDYTMASHGMSIDPR 1281

Query: 1169 HMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSE 1228
            H+MLLAD+MT++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+A++ G+ D I GVSE
Sbjct: 1282 HVMLLADVMTYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAALFGKSDSISGVSE 1341

Query: 1229 CIIMGIP-MPLGTGI 1242
             IIMG P   +GTG+
Sbjct: 1342 SIIMGNPAQTVGTGM 1356


>gi|389744278|gb|EIM85461.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Stereum
            hirsutum FP-91666 SS1]
          Length = 1404

 Score = 1226 bits (3172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/1268 (50%), Positives = 857/1268 (67%), Gaps = 52/1268 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             R P +E +++    ++I K  +  A K V CP C   NG VKKA A L I+HD+ +  +
Sbjct: 126  FRRPNLENVQR----QAIFKAVNGAARKTVYCPYCSATNGAVKKAGA-LKIVHDKFRAKK 180

Query: 61   SLQE-------FASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYLS--- 109
            + +E       FA A+   KE    +N A    LN + VL LFKR++  DCE+L L    
Sbjct: 181  TAEEMEKFKRSFAPAVEAQKELGQYINKAVMEDLNALKVLDLFKRISAEDCELLGLRPEY 240

Query: 110  ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE+ I   I+VPP+ IRPSV  DG+ SNE+D+T +L  I+ TNA ++Q L +     +
Sbjct: 241  NRPEEFIWQYISVPPVCIRPSVQQDGA-SNEDDLTVKLTEIVFTNALIRQGLAKGAPTAQ 299

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  WE LQ+ V  YINS++ GVP  M   +P+ GF QRLKGKQGRFRGNLSGKRV+++G
Sbjct: 300  LMEQWEFLQLSVGMYINSEMPGVPSQMG-QKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 358

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY-P 288
            RTVISPDPNL+I EVA+P R+A+ILTYPERV+  NI++LR+ ++NG D +PGA  +    
Sbjct: 359  RTVISPDPNLRIDEVAVPERVAKILTYPERVTGFNIDRLRKAVRNGCDVHPGANYVTAGS 418

Query: 289  DGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 348
             G  + L    R  +A  L++G IV+RH+ DGD+VLFNRQPSLH++SIMCHR ++ PWR+
Sbjct: 419  SGFKKYLKFGNREGIADGLRTGDIVERHIIDGDIVLFNRQPSLHKLSIMCHRVKVRPWRS 478

Query: 349  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDF 408
             R NE VCNPYNADFDGDEMN+HVPQTEEARTEAL LM V++N+ TP+NGE ++A+ QDF
Sbjct: 479  FRLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMNVKHNMVTPRNGEPVIAAIQDF 538

Query: 409  LTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
            +T+S+L++R+D F+DR  F+ +C Y  D   ++D+P P I KPV LWTGKQ+F+VL+ P+
Sbjct: 539  ITASYLLSRRDQFFDRRQFTQICSYFADADLQIDIPPPTIWKPVRLWTGKQVFNVLMHPN 598

Query: 469  ANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET----MCPNDGFVYFRNSELISGQLGKA 524
                V VN+    +T  N   + +     RI+     + PNDG++   NSE++ G + KA
Sbjct: 599  KKSNVLVNV----ETKCNNQQKPDSKAYPRIKDPAPDLSPNDGWLVIVNSEIMCGVMDKA 654

Query: 525  TLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKK 584
            T+G G K  ++ +++RDYG H  +  MNRLAKL ARW+ N GFS+GI+DV P   LS+KK
Sbjct: 655  TVGGGKKKMVFGIIMRDYGPHEAAAAMNRLAKLCARWLANFGFSLGINDVIPGPILSEKK 714

Query: 585  GKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW 644
              L+ + Y  C   I    +GKL+ KPGCD  QTLEA+I+ +L+++RE+ G+ CM  L  
Sbjct: 715  DDLVEKAYAKCLDMITLAKKGKLENKPGCDQEQTLEAMISGVLSKVREEVGQICMEELSR 774

Query: 645  RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 704
             N+PLIM+ CGSKGS IN+SQMVACVGQQ + G R P+GF DRSLPHFP+K++EP +KGF
Sbjct: 775  HNAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSREPPSKGF 834

Query: 705  VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
            V NSFYSGLS TEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDL+ QYD SVRNA
Sbjct: 835  VRNSFYSGLSPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNA 894

Query: 765  GGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQ 824
             G +VQF YGDDG+DPA +EG + +P+ F R      A+      R L P +V EI +++
Sbjct: 895  TGGVVQFRYGDDGLDPACLEGDA-QPIEFVRAWSHA-ASIAGRSLRGLLPYEVLEITDRE 952

Query: 825  LAAYG-KESCSEAFLNSLRKFF--------------EGQQDKLDKKIKFVEDIGWDDKSQ 869
            LA       CS A++ ++R F                G  D L ++ ++ E+      + 
Sbjct: 953  LAKQRFTVECSAAYIATIRSFVLENVATRLADARQSRGMFDALYREAEWDEETDLSMGAT 1012

Query: 870  ILEE-VTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTF 928
              E+ +    + +TE QL  F+  C+++Y   ++E G+ +GA+GAQSIGEPGTQMTLKTF
Sbjct: 1013 AAEKAIVDNKAKVTEDQLLSFLNICWTKYVRAKIEPGSTVGAVGAQSIGEPGTQMTLKTF 1072

Query: 929  HFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQV 988
            HFAGVASMN+T GVPRIKEIIN AK ISTPII+ +L   D+E +AR+VKGR+EKT LG +
Sbjct: 1073 HFAGVASMNVTLGVPRIKEIINAAKVISTPIISCKLVTADSEPSARIVKGRLEKTHLGDI 1132

Query: 989  AKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR- 1047
            A  ++         I I +DME++Q   L +  D +K  IV+  K+K+KQ+ I ++  + 
Sbjct: 1133 AAVLEEAWAPEYTYIGIMVDMESVQKLQLELTLDDIKWGIVKAKKLKVKQEQITIIPKKN 1192

Query: 1048 KLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYR 1107
            +L ++  +D    ++ L  LK +LP V+VKG+ T+ R VI  K+K+  +    G+K    
Sbjct: 1193 RLRLY--IDGQDKYYRLRELKRLLPDVVVKGVPTIARAVINVKDKDDGR----GKKGDRE 1246

Query: 1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
            LLVEG GLQ VM  EGI G +T SNH+ E  Q LGIEAAR+ II+EI  TM +HGMSID 
Sbjct: 1247 LLVEGYGLQKVMTTEGIVGEQTSSNHVIETAQVLGIEAARLTIINEIQYTMGSHGMSIDP 1306

Query: 1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
            RH+MLL D+MT++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+AS  G+ D + GVS
Sbjct: 1307 RHVMLLGDVMTYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDASAWGKTDSVAGVS 1366

Query: 1228 ECIIMGIP 1235
            E IIMG P
Sbjct: 1367 ESIIMGNP 1374


>gi|390600773|gb|EIN10167.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Punctularia strigosozonata HHB-11173 SS5]
          Length = 1405

 Score = 1226 bits (3171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 647/1276 (50%), Positives = 865/1276 (67%), Gaps = 67/1276 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             R P +E L++  L K++    ++ A K V CP C   NG VKKA A L IIHD+ +  +
Sbjct: 126  FRRPNLENLQRQALCKAV----NSAARKVVYCPYCAATNGTVKKAGA-LKIIHDKFRAKK 180

Query: 61   SLQE-------FASAITHTKESKAAVNVATYI-------LNPVNVLFLFKRMTDTDCEVL 106
            + +E       F++A+   KE      +ATYI       LNP+ VL LF+R++D DCE+L
Sbjct: 181  TAEEMERWKKTFSNAVDAQKE------LATYIGRAVHEDLNPLKVLDLFRRISDEDCELL 234

Query: 107  YLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVE 163
             +     RPE+ I   I+VPP+AIRPSV  DG+ SNE+D+T +L  I+ TNA ++Q L +
Sbjct: 235  GMKPEQGRPEEFIWQYISVPPVAIRPSVAQDGA-SNEDDLTVKLTEIVFTNALIKQGLAK 293

Query: 164  ANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGK 223
                 + +  WE LQ+ VA YINS++ GVP  M   +P+ GF QRLKGKQGRFRGNLSGK
Sbjct: 294  GAPTPQFMEQWEFLQLSVAMYINSELPGVPSQMG-QKPIRGFCQRLKGKQGRFRGNLSGK 352

Query: 224  RVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR 283
            RV+++GRTVISPDPNL+I EVA+P R+A+ILTYPERV+ HNIEKLRQ ++NG D +PGA 
Sbjct: 353  RVDFSGRTVISPDPNLRIDEVAVPERVAKILTYPERVTAHNIEKLRQAVRNGCDIHPGAN 412

Query: 284  MIRY-PDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRA 341
             +     G  + L +GK R+ +A  L+ G IV+RH+ DGD+VLFNRQPSLH++SIMCHR 
Sbjct: 413  YVTAGSSGFKKFLKFGK-RDAIADGLRIGDIVERHIIDGDIVLFNRQPSLHKLSIMCHRV 471

Query: 342  RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEIL 401
            ++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEARTEAL LM +++NL +P+NGE +
Sbjct: 472  KVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMNIKHNLVSPRNGEPV 531

Query: 402  VASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLF 461
            +A+ QDF+T+SFL++++D F+DR+ F+ +C Y  D    +D+P P I KP  LWTGKQ+F
Sbjct: 532  IAAIQDFITASFLLSQRDRFFDRSQFTQVCSYFADANLHIDIPPPTIWKPQRLWTGKQVF 591

Query: 462  SVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR----IETMCPNDGFVYFRNSELI 517
            +VL+RP+    + VN+  K     NK+   + +   +    I  + PNDG++   NSE++
Sbjct: 592  NVLMRPNKKSNILVNVESK----CNKVEAPKAENYPKRMKPINDLAPNDGWLVVVNSEIM 647

Query: 518  SGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPK 577
             G + KATLG+G K  ++ V+LRDYG H  +  MNR+AKLSARW+ N+GFS+GI+DV P 
Sbjct: 648  CGVMDKATLGSGKKKSIFGVILRDYGPHEAAAAMNRVAKLSARWLANYGFSLGINDVIPG 707

Query: 578  KELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKA 637
              L  KK +L+ + Y  C   I    +G L+ K GC+  QTLEA+I+ +L+++R++ G+ 
Sbjct: 708  PVLFSKKDQLVEKAYAACLDLIARAKKGLLENKAGCNQEQTLEAMISSVLSKVRDEVGEI 767

Query: 638  CMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAK 697
            C+  L   N+PLIM+ CGSKGS IN++QMVACVGQQ + G R P+GF DRSLPHFP+K++
Sbjct: 768  CLKELSRYNAPLIMATCGSKGSVINVAQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSR 827

Query: 698  EPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQY 757
            EP +KGFV NSFYSGL  TEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDL+  Y
Sbjct: 828  EPPSKGFVRNSFYSGLLPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTHY 887

Query: 758  DNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQV 817
            D +VRNA G IVQF YGDDG+DPA +EG + +PL+ +R     ++    AG R L P +V
Sbjct: 888  DLTVRNAIGGIVQFRYGDDGLDPACLEGDA-QPLDMERAWTHARSISSRAG-RSLLPYEV 945

Query: 818  SEIVEKQLAAYGKES-CSEAFLNSLRKFF--------------EGQQDKLDKKIKFVEDI 862
             EI + +L+     S C+ A+  ++R F                G  D L+++ ++  D 
Sbjct: 946  LEITDAELSQSKFVSECTAAYRATVRGFVTEHIAHRLAEVRRSRGMFDALEREDEWDSDT 1005

Query: 863  GWDDKSQILEEV-THKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGT 921
                 + + E+      S +TE QL +F+Q C+ +Y   ++E G+ +GA+GAQSIGEPGT
Sbjct: 1006 DLSMGADVTEKAYVENKSKVTEDQLRMFLQLCWVKYVKAKIEPGSTVGAVGAQSIGEPGT 1065

Query: 922  QMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIE 981
            QMTLKTFHFAGVASMN+T GVPRIKEIIN AK ISTPII+ +L   ++E +AR+VKGR+E
Sbjct: 1066 QMTLKTFHFAGVASMNVTLGVPRIKEIINAAKVISTPIISCKLVTPNSEPSARIVKGRLE 1125

Query: 982  KTLLGQ-VAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQH 1040
            KT LG  VA  ++         I + +D + IQ   L +  D +K +IV   K+K+KQ+ 
Sbjct: 1126 KTHLGDVVAAVLEEAWAPEYTYIGVIVDTDAIQKLQLELTLDDIKWAIVNAKKLKIKQES 1185

Query: 1041 IKVLDFR-KLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKE 1099
            I V+  R +L I+  +D    ++ L  LK  LP V+VKG+ ++ R VI  KEK+  K   
Sbjct: 1186 ITVIPRRNRLRIY--IDGIDKYYRLRELKRQLPDVVVKGVPSIRRAVINIKEKDDPK--- 1240

Query: 1100 NGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMK 1159
             G+K    LLVEG GLQ VM  EGI G  T SNHI EV Q LGIEA+R  II+EI  TM 
Sbjct: 1241 -GKKGDNELLVEGYGLQKVMTTEGIVGEHTSSNHIIEVAQVLGIEASRRTIINEIQYTMV 1299

Query: 1160 AHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGR 1219
            +HGMSID RH+ LL D+MT++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+AS  G+
Sbjct: 1300 SHGMSIDPRHITLLGDVMTYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDASAYGK 1359

Query: 1220 DDRIEGVSECIIMGIP 1235
            +D I GVSE IIMG P
Sbjct: 1360 NDSIAGVSESIIMGNP 1375


>gi|224003141|ref|XP_002291242.1| DNA directed RNA polymerase III, largest subunit [Thalassiosira
            pseudonana CCMP1335]
 gi|220973018|gb|EED91349.1| DNA directed RNA polymerase III, largest subunit [Thalassiosira
            pseudonana CCMP1335]
          Length = 1422

 Score = 1225 bits (3169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/1296 (50%), Positives = 868/1296 (66%), Gaps = 70/1296 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKK--AVAVLGIIHDRSK- 57
            MRNP+ + L K  + K ++ KC     KA +CP C   NG VKK      L IIH+R K 
Sbjct: 151  MRNPRTDVLGKASVFKKVLDKCK----KAHQCPYCHKPNGTVKKVHGAPTLKIIHERYKG 206

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V + LQ    A+    E   A+ VA   L P  VL LFK MTD DCEVL+++  
Sbjct: 207  RHMEDEVEDLLQSLQGAMITNLEINHALRVAVEDLLPTRVLELFKGMTDDDCEVLWVAPW 266

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              RPE LI+ +I VPP+ IRPSV MD G  SNE+D+T +L  +I  N +L+  +      
Sbjct: 267  IGRPENLILEHILVPPVPIRPSVAMDVGGGSNEDDLTVKLLEVINVNVALELNMTRNPQT 326

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               + GW+ LQ +VAQYIN D+ G+   M   +P+ G  QRLKGKQGRFRGNLSGKRV++
Sbjct: 327  KTIMEGWDVLQSQVAQYINGDMPGLKKEMG-HKPIRGLCQRLKGKQGRFRGNLSGKRVDF 385

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY 287
            + RTVISPDPNL++ +V +P+ +A+I+TYPE VS +NIEKLRQ + NGPD +PGA +IR 
Sbjct: 386  SARTVISPDPNLRVDQVGVPVHVAKIMTYPETVSRYNIEKLRQRVLNGPDVHPGANLIR- 444

Query: 288  PDGT---ARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIM 344
            P G     + L    R + A  L+ G IV+RH+EDGDVVLFNRQPSLH++SIM H+ ++M
Sbjct: 445  PGGENSFVKSLAYADRERAAQTLRIGDIVERHMEDGDVVLFNRQPSLHKLSIMSHQVKVM 504

Query: 345  PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAS 404
            PWRT RFN  VC PYNADFDGDEMNMH+PQTEEAR EA +LMGV +NL TP+NGE LVA 
Sbjct: 505  PWRTFRFNICVCAPYNADFDGDEMNMHLPQTEEARIEANMLMGVHHNLATPRNGEPLVAC 564

Query: 405  TQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVL 464
            +QDFL++++LIT++D F+ R  F  +  Y G   +++D+P PAILKPV LWTGKQ+F+ +
Sbjct: 565  SQDFLSAAYLITQRDQFFSREMFCSLVSYFGLAEEQIDVPLPAILKPVPLWTGKQVFTCI 624

Query: 465  IRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKA 524
            ++P+      VN  +KEK Y         D   +++  CPNDG+V FRNSELISG + K 
Sbjct: 625  VKPNKQTTALVNFEMKEKNY---------DTNKKLKHFCPNDGWVAFRNSELISGNIAKK 675

Query: 525  TLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH-GFSIGIDDVQPKKELSDK 583
            T+G+G+K GL  VLLRD G+   +  M+R +KL +R+ G H GFSIGI DV P  +L   
Sbjct: 676  TIGDGSKTGLLYVLLRDCGSAEAARFMDRFSKLCSRYFGMHRGFSIGISDVSPSAKLKKM 735

Query: 584  KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLP 643
            K  ++S  Y+     IK+Y+EG L+L+PGCD  Q+LE ++  IL ++RE AG+  M +LP
Sbjct: 736  KYDILSTGYKKAEEAIKKYDEGTLELRPGCDLLQSLEEILNGILGKLREAAGQEAMKALP 795

Query: 644  WRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKG 703
            W N+P IM++CGSKGSP+NISQM+ACVGQQ+VGG R  +GF++R+LPHF   +  P AKG
Sbjct: 796  WSNTPRIMAECGSKGSPLNISQMMACVGQQAVGGMRIQDGFVNRTLPHFTYHSLTPPAKG 855

Query: 704  FVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRN 763
            FVANSFYSGL+ATEF FHTMGGREGLVDTAVKTA+TGYM+RRL+KALEDLS++YDNSVRN
Sbjct: 856  FVANSFYSGLTATEFIFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSLRYDNSVRN 915

Query: 764  AGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEK 823
            +   +VQF YGDD ++P  ME     P+ FDRL + +    P   +  L  +Q+ E +E 
Sbjct: 916  SENTVVQFTYGDDSLNPEKMENND-RPVEFDRLHLHISQIFPCVDEPNLLKEQLQEKIEH 974

Query: 824  QLAAYGKESC----SEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTS 879
             ++   +  C     + FL  +  FFEG  +  D  I    ++      + +++    + 
Sbjct: 975  CISEE-RFQCLLPKGKKFLAEIISFFEGIVELQDTIIGTCTNV------EHIKQRIWNSC 1027

Query: 880  GITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNIT 939
              TE Q+  F++T  S+Y    VE G A+GAIGAQSI EPGTQMTLKTFHFAGV+SMN+T
Sbjct: 1028 RFTETQVNEFLKTALSKYTKAMVEPGEAVGAIGAQSISEPGTQMTLKTFHFAGVSSMNVT 1087

Query: 940  QGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSR 999
             GVPR+KEIIN +K ISTPIITA+L  +DN+  AR+VK  IEKT LG+++  +K V +S 
Sbjct: 1088 LGVPRLKEIINASKNISTPIITAKLVQDDNKVGARIVKAGIEKTTLGEISIYVKEVYSSG 1147

Query: 1000 LASIVIALDMETIQDAHLCINADIVKESIVQ------TPKI--KLKQQHIKVL--DFRKL 1049
               + I LDM+ I+   L I+A  V+  I++       P I   L  +H+ V      KL
Sbjct: 1148 DCYLSILLDMDAIRQLRLNIDAVSVRRCILKGVRGQTRPPILRSLTDKHVLVKKGSKSKL 1207

Query: 1050 EIFPPVDK--SKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYR 1107
             +F P DK  +  +F + +LK  LP VIV+GI TV R VI E+ K        G K +Y 
Sbjct: 1208 RVFVP-DKGETPTYFLMQALKVALPRVIVQGISTVNRAVINEENK--------GGKTQYH 1258

Query: 1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
            LLVEG GL  VMG+ G+DG  T +NHI EV+QTLG+EAAR  I  EI+  M A+G+ ID 
Sbjct: 1259 LLVEGYGLAEVMGSPGVDGRHTTTNHIIEVEQTLGVEAARTSISSEISYIMNAYGIGIDS 1318

Query: 1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
            RH++LL+D+MTF+GEVLGITRFG+ KM +SVLMLASFEKT DHL +A+V+GR D I+GVS
Sbjct: 1319 RHLLLLSDVMTFKGEVLGITRFGVAKMRESVLMLASFEKTTDHLLDAAVHGRTDAIDGVS 1378

Query: 1228 ECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDPI 1263
            ECIIMGIP+P+GTG+ K+ +R       +   P+P+
Sbjct: 1379 ECIIMGIPIPIGTGLFKLLKRAT-----RASKPEPV 1409


>gi|449269147|gb|EMC79953.1| DNA-directed RNA polymerase III subunit RPC1, partial [Columba livia]
          Length = 1375

 Score = 1223 bits (3164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 648/1275 (50%), Positives = 868/1275 (68%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K + +KC     K   CP CG  NG VKK   +L IIH++ K   
Sbjct: 114  LKRPGLTYLQKRGLKKKVSEKCR----KKNTCPYCGAFNGTVKKC-GLLKIIHEKYKTNK 168

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 169  KVVDPMVSTFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPE 228

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 229  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 288

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 289  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 348

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+PI +A+ILT+PE+V+  NI  +R+ ++NGPD +PGA  I  
Sbjct: 349  SGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQQ 408

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGD+VLFNRQPSLH++SIM H AR+ P
Sbjct: 409  RHTQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKP 467

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 468  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 527

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP PAILKPV LWTGKQ+FS
Sbjct: 528  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFS 587

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            ++++P  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 588  LILKPSDDCPVKANLRTKGKQYCGK-----------GEDLCYNDSYVTIQNSELMSGSMD 636

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G    +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 637  KGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 696

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 697  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 756

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 757  DKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 816

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 817  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 876

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  ++A  P   +  LS  ++    E
Sbjct: 877  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVYPCRSEPALSKNELVLTSE 935

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D      +V ++   IT
Sbjct: 936  SIMKKNEFLCCRDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPQVLYQLDRIT 992

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              QLE F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 993  PTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1052

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1053 PRIKEIINASKAISTPIITAQLDKDDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1112

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  + K+++K   + V     + + P  + KS ++
Sbjct: 1113 ILVKLSLERIRLLRLEVNAETVRYSICIS-KLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1171

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L SLK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1172 YVLQSLKEELPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1223

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G KT SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1224 HGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1283

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1284 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1343

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     +++ PP
Sbjct: 1344 LFKLLHKADKESTPP 1358


>gi|402880352|ref|XP_003903768.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Papio
            anubis]
          Length = 1390

 Score = 1222 bits (3163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1275 (50%), Positives = 862/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPSLTYLQKRGLKKKISDKCR----KKNICHHCGSFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ +QNGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCGKG-----------EDLCANDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCPSEPALSKNELILTTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1359 LFKLLHKADRDPNPP 1373


>gi|355562468|gb|EHH19062.1| hypothetical protein EGK_19701 [Macaca mulatta]
 gi|355782811|gb|EHH64732.1| hypothetical protein EGM_18035 [Macaca fascicularis]
 gi|380809180|gb|AFE76465.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
 gi|383415455|gb|AFH30941.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
 gi|383415457|gb|AFH30942.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
 gi|383415459|gb|AFH30943.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
 gi|383415461|gb|AFH30944.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
 gi|383415463|gb|AFH30945.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
          Length = 1390

 Score = 1222 bits (3162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1275 (50%), Positives = 862/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKNICHHCGSFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ +QNGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCGKG-----------EDLCANDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCPSEPALSKNELILTTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1359 LFKLLHKADRDPNPP 1373


>gi|296220277|ref|XP_002756253.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 1
            [Callithrix jacchus]
          Length = 1390

 Score = 1222 bits (3161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1275 (50%), Positives = 862/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPSLTYLQKRGLKKKISDKCR----KKNICHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ +QNGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCGKG-----------EDLCANDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCPSEPALSKNELILTTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMNKSEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1359 LFKLLHKANRDPNPP 1373


>gi|224052370|ref|XP_002195476.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 1
            [Taeniopygia guttata]
          Length = 1390

 Score = 1222 bits (3161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 649/1275 (50%), Positives = 866/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K + +KC     K   CP CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLAYLQKRGLKKKVSEKCR----KKTTCPYCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI + KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSTFLQSFETAIEYNKEVEPLLGRAQENLNPLVVLNLFKRIPVEDIPLLLMNPQ 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+PI +A+ILT+PE+V+  NI  +R+ + NGPD +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVCNGPDVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGD+VLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP PAILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            ++++P  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  LILKPSDDCPVKANLRTKGKQYCGKG-----------EDLCYNDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G    +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  ++A  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVYPCRSEPALSKNELVLTSE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMKKNEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              QLE F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  + K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSICVS-KLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L SLK  LP V+V+GI  V R VI         V E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQSLKEELPKVVVQGIPEVSRAVI--------HVDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G KT SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQR---DAVPP 1253
            + K+  R   ++ PP
Sbjct: 1359 LFKLLHRADKESTPP 1373


>gi|449504974|ref|XP_004174828.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 2
            [Taeniopygia guttata]
          Length = 1369

 Score = 1222 bits (3161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 649/1275 (50%), Positives = 866/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K + +KC     K   CP CG  NG VKK   +L IIH++ K   
Sbjct: 108  LKRPGLAYLQKRGLKKKVSEKCR----KKTTCPYCGAFNGTVKKC-GLLKIIHEKYKTNK 162

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI + KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 163  KVVDPIVSTFLQSFETAIEYNKEVEPLLGRAQENLNPLVVLNLFKRIPVEDIPLLLMNPQ 222

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 223  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 282

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 283  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 342

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+PI +A+ILT+PE+V+  NI  +R+ + NGPD +PGA  I  
Sbjct: 343  SGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVCNGPDVHPGANFIQQ 402

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGD+VLFNRQPSLH++SIM H AR+ P
Sbjct: 403  RHTQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKP 461

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 462  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 521

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP PAILKPV LWTGKQ+FS
Sbjct: 522  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFS 581

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            ++++P  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 582  LILKPSDDCPVKANLRTKGKQYCGKG-----------EDLCYNDSYVTIQNSELMSGSMD 630

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G    +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 631  KGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 690

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 691  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 750

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 751  DKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 810

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 811  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 870

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  ++A  P   +  LS  ++    E
Sbjct: 871  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVYPCRSEPALSKNELVLTSE 929

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 930  SIMKKNEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 986

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              QLE F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 987  PTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1046

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1047 PRIKEIINASKAISTPIITAQLDKDDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1106

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  + K+++K   + V     + + P  + KS ++
Sbjct: 1107 ILVKLSLERIRLLRLEVNAETVRYSICVS-KLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1165

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L SLK  LP V+V+GI  V R VI         V E   K+KY+LLVEG  L+AVM  
Sbjct: 1166 YVLQSLKEELPKVVVQGIPEVSRAVI--------HVDEQSGKEKYKLLVEGDNLRAVMAT 1217

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G KT SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1218 HGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1277

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1278 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1337

Query: 1242 ILKIRQR---DAVPP 1253
            + K+  R   ++ PP
Sbjct: 1338 LFKLLHRADKESTPP 1352


>gi|403297971|ref|XP_003939815.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Saimiri
            boliviensis boliviensis]
          Length = 1390

 Score = 1221 bits (3160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1275 (50%), Positives = 862/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKNICHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ +QNGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCGKG-----------EDLCANDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCPSEPALSKNELILTTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1359 LFKLLHKANRDPNPP 1373


>gi|39725938|ref|NP_008986.2| DNA-directed RNA polymerase III subunit RPC1 [Homo sapiens]
 gi|206729892|sp|O14802.2|RPC1_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
            polymerase III subunit C1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit; AltName:
            Full=DNA-directed RNA polymerase III subunit A; AltName:
            Full=RNA polymerase III 155 kDa subunit; Short=RPC155;
            AltName: Full=RNA polymerase III subunit C160
 gi|26996801|gb|AAH41089.1| Polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Homo
            sapiens]
 gi|119575002|gb|EAW54617.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Homo
            sapiens]
 gi|168277638|dbj|BAG10797.1| DNA-directed RNA polymerase III subunit RPC1 [synthetic construct]
          Length = 1390

 Score = 1221 bits (3160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1275 (50%), Positives = 862/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKNICHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ +QNGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCGKG-----------EDLCANDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCPSEPALSKNELILTTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1359 LFKLLHKADRDPNPP 1373


>gi|410216326|gb|JAA05382.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
            troglodytes]
 gi|410254866|gb|JAA15400.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
            troglodytes]
 gi|410296284|gb|JAA26742.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
            troglodytes]
 gi|410329457|gb|JAA33675.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
            troglodytes]
          Length = 1390

 Score = 1221 bits (3160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1275 (50%), Positives = 862/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKNICHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ +QNGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKIAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCGKG-----------EDLCANDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCPSEPALSKNELILTTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1359 LFKLLHKADRDPNPP 1373


>gi|109503668|ref|XP_001056048.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Rattus
            norvegicus]
 gi|392353748|ref|XP_341389.5| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Rattus
            norvegicus]
          Length = 1390

 Score = 1220 bits (3157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 647/1275 (50%), Positives = 862/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKSTCHYCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGPD +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H A++ P
Sbjct: 424  RHMQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+ G + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCGKG-----------EDLCTNDSYVTIQNSELMCGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +R LS  +++   E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVYPCQSERALSKNELTLTTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++ F +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  AIMKKNEFLCCQDSFLQEIKTFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 RTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDMDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+K++LLVEG  L+AVM  
Sbjct: 1187 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKFKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1359 LFKLLHKANRDPKPP 1373


>gi|357472549|ref|XP_003606559.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
 gi|355507614|gb|AES88756.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
          Length = 1036

 Score = 1220 bits (3156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/928 (65%), Positives = 704/928 (75%), Gaps = 72/928 (7%)

Query: 129  PSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSD 188
            PS+     Q+NENDITE+LK+IIQ NA +QQE VE     K    +  LQ EVAQYINSD
Sbjct: 113  PSLFTYAKQNNENDITEKLKKIIQANAIMQQESVETQ---KYQDAYLMLQFEVAQYINSD 169

Query: 189  VRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPI 248
            V+G P+++Q+++PL+GF+QR+KGKQGRFR NLSGKRVEYTGRTVISPDPNLKITEVAIPI
Sbjct: 170  VKGGPYNLQMSKPLTGFIQRIKGKQGRFRSNLSGKRVEYTGRTVISPDPNLKITEVAIPI 229

Query: 249  RMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELK 308
             MARILTYPERV+ HNIEKLRQC++NGPDKYPGARM++   G +  L    R + A ELK
Sbjct: 230  HMARILTYPERVTHHNIEKLRQCVRNGPDKYPGARMVKEAGGNSWNLKILTRTRRADELK 289

Query: 309  SGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEM 368
             G IV+RH+EDGDVVLFNRQPSLHRMS+MCHRAR+MPWRTLRFNESVCNPYNADFDGDEM
Sbjct: 290  FGDIVERHIEDGDVVLFNRQPSLHRMSMMCHRARVMPWRTLRFNESVCNPYNADFDGDEM 349

Query: 369  NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 428
            N+HVPQTEEARTEALLLM VQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDR+ FS
Sbjct: 350  NIHVPQTEEARTEALLLMTVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSTFS 409

Query: 429  LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKL 488
            L+C YMGDGMD VDLPTPAI+KPVELW+GKQLF++L+RPHAN+RVYV LTV EK Y +KL
Sbjct: 410  LICSYMGDGMDPVDLPTPAIIKPVELWSGKQLFNILLRPHANVRVYVTLTVMEKNYGSKL 469

Query: 489  IRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
                 D E   +TMCP+DGFVYFRNSELISGQLGK TLGNGNKDGL+SVLLRDY ++A +
Sbjct: 470  ----DDREREFKTMCPDDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKSYAAA 525

Query: 549  GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
             CMNRLAKLSARWIGNHGFSIGIDDVQPK +L   K K I + Y+ C+  I+++N+G+L+
Sbjct: 526  SCMNRLAKLSARWIGNHGFSIGIDDVQPKDKLIKGKEKTIEDGYKKCDGYIEDFNKGELK 585

Query: 609  LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
            L PGCDAAQTLE+ I   LN +R+   K CM +L WRNSPLIMSQCGSKGSPINI QMVA
Sbjct: 586  LAPGCDAAQTLESKIFSTLNGLRDTTAKVCMETLHWRNSPLIMSQCGSKGSPINICQMVA 645

Query: 669  CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            CVGQQSVGG RA NGFIDR+LPHFP+KA  P AKGFV +SF++GLSATEFFFHTMGGREG
Sbjct: 646  CVGQQSVGGCRATNGFIDRNLPHFPKKANTPDAKGFVKDSFFTGLSATEFFFHTMGGREG 705

Query: 729  LVDTA-------------------VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIV 769
            LVDTA                   VKTADTGYMSRRL+KALEDL + YD +VR+A   +V
Sbjct: 706  LVDTAVRVSAMVTLKERLYHELRWVKTADTGYMSRRLMKALEDLFLHYDYTVRDANCSLV 765

Query: 770  QFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAG-QRYLSPQQVSEIVEKQLAAY 828
            QF YGDDGMDPA MEGK+G+PLNFDRL ++ KA CP  G    LS   V +++ ++L+  
Sbjct: 766  QFCYGDDGMDPAGMEGKNGKPLNFDRLFLRSKAICPADGDDTILSSSDVHKVLHEKLSEV 825

Query: 829  GKESCSEA----------------FLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQI-- 870
            G     E                 FL SL+ F       + +  K  E I  DD + +  
Sbjct: 826  GMSKLVEKNASNNDITPAVGFSTDFLKSLQSF-------VGENTKLTESITEDDSNNLKN 878

Query: 871  LEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHF 930
            L+    + SGI+ +QLEVF+  C SRYR+K++EAGT IGAIGAQSIGEPGTQMTLKTFHF
Sbjct: 879  LKNFISRISGISRRQLEVFLDICLSRYRIKKIEAGTPIGAIGAQSIGEPGTQMTLKTFHF 938

Query: 931  AGVASMNI--------------------TQGVPRIKEIINGAKRISTPIITAELECNDNE 970
            AGVASM+I                    T GVPRI+EII+GA+ I TPIITA LE  DN 
Sbjct: 939  AGVASMSILYLTMLSIMLIINVLPNVYVTLGVPRIQEIIDGARNIKTPIITAILEREDNA 998

Query: 971  NAARVVKGRIEKTLLGQVAKSIKIVMTS 998
              AR VKGRIEKT LGQV    K V  S
Sbjct: 999  ETARAVKGRIEKTNLGQVCNCSKKVSLS 1026


>gi|57529842|ref|NP_001006500.1| DNA-directed RNA polymerase III subunit RPC1 [Gallus gallus]
 gi|75571385|sp|Q5ZL98.1|RPC1_CHICK RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
            polymerase III subunit C1; AltName: Full=DNA-directed RNA
            polymerase III subunit A
 gi|53130332|emb|CAG31495.1| hypothetical protein RCJMB04_7b9 [Gallus gallus]
          Length = 1390

 Score = 1220 bits (3156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 648/1275 (50%), Positives = 865/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K + +KC     K   CP CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKVSEKCR----KKNTCPYCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSTFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+PI +A+ILT+PE+V+  NI  +R+ ++NGPD +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGD+VLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP PAILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
             +++P  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  SILKPSDDCPVKANLRTKGKQYCGKG-----------EDLCYNDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G    +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L+   Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLHAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  ++A  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVYPCRSEPALSKNELVLTSE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMKKNEFLCCRDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              QLE F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  + K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSICIS-KLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L SLK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQSLKEELPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G KT SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     +++ PP
Sbjct: 1359 LFKLLHKADKESTPP 1373


>gi|194042171|ref|XP_001929395.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Sus
            scrofa]
          Length = 1390

 Score = 1219 bits (3155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 649/1275 (50%), Positives = 861/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKNTCHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANITFLRKLVRNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQVFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  VILRPSYDNPVRANLRTKGKQYCGKG-----------EDLCVNDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y  C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYRKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCQSEPALSKNELLLTTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMKKNEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I+I L +E I+   L +NA+ V+ SI  + K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILIKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTQTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1359 LFKLLHKANRDPSPP 1373


>gi|348576170|ref|XP_003473860.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Cavia
            porcellus]
          Length = 1390

 Score = 1219 bits (3153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 647/1275 (50%), Positives = 862/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K +  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLRKKVSDKCR----KKSVCHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPMVSSFLQSFETAIEHNKEVEPLLGRAQENLNPLIVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP PAILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKVKVRLPHPAILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+ G + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCGK-----------GEDLCVNDSYVTIQNSELMCGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N G+LQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGRLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  ++A  P   +  LS  +++   E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVYPCPSEPALSKNELALSTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  AIMKKNEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              QLE F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP-PVDKSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P    KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAESVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRESSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQFLKEELPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTRTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1359 LFKLLHKANRDPNPP 1373


>gi|395820429|ref|XP_003783569.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Otolemur
            garnettii]
          Length = 1390

 Score = 1219 bits (3153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 649/1275 (50%), Positives = 861/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKSICHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ +QNGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+ G + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCGK-----------GEDLCVNDSYVTIQNSELMCGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLT 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +R LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCPSERALSKNELILTTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMKKNEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I+I L +E I+   L +NA+ V+ SI  + K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILIKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  L  V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQFLKEDLLKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1359 LFKLLHKANRDPNPP 1373


>gi|291404119|ref|XP_002718445.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa
            [Oryctolagus cuniculus]
          Length = 1390

 Score = 1218 bits (3151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1275 (50%), Positives = 864/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I +KC     K   C  CG +NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISEKCR----KKNACHHCGAVNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H +E +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSTFLQSFETAIEHNREVEPLLGRAQENLNPLIVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ +QNGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G +V+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHMHMKRFLKYGN-REKMAQELKYGDVVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  VILRPSDDSPVRANLRTKGKQYCGKG-----------EDLCVNDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  ++A  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVFPCQNEPALSKNELILTSE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +++ K     +  G +D       V ++   IT
Sbjct: 951  AIMKKNEFLCCQDSFLQEIKKFIKGVSERIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVRGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1359 LFKLLHKANRDPNPP 1373


>gi|410975432|ref|XP_003994136.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Felis catus]
          Length = 1390

 Score = 1217 bits (3150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 647/1275 (50%), Positives = 862/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKNICHYCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H A++ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCGKG-----------EDLCVNDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCQSEPALSKNELVLTTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMKKTEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  + K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1359 LFKLLHKADRDPSPP 1373


>gi|426255838|ref|XP_004021555.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Ovis aries]
          Length = 1390

 Score = 1217 bits (3149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 649/1276 (50%), Positives = 863/1276 (67%), Gaps = 54/1276 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKNTCHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVMDPIVSSFLQSFETAIEHNKEVEPLLGKAQENLNPLVVLNLFKRIPAEDIPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y             R E +C ND +V  +NSEL+SG + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCG-----------RGEDLCVNDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKHELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCRSEPALSKNELLLSAE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVED-IGWDDKSQILEEVTHKTSGI 881
              +       C ++FL  ++KF +    ++ +KIK   D  G +D       V ++   I
Sbjct: 951  SIMKKNEFLCCQDSFLQEIKKFIK----EVSEKIKKTRDKYGINDNGTTEPRVLYQLDRI 1006

Query: 882  TEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQG 941
            T  Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT G
Sbjct: 1007 TPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLG 1066

Query: 942  VPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLA 1001
            VPRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V      
Sbjct: 1067 VPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDC 1126

Query: 1002 SIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKI 1060
             I++ L +E I+   L +NA+ V+ SI  + ++++K   + V     L + P  + KS +
Sbjct: 1127 FILVKLSLERIRLLRLEVNAETVRYSICMS-RLRVKPGDVAVHGEAVLCVTPRENSKSSM 1185

Query: 1061 HFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMG 1120
            ++ L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM 
Sbjct: 1186 YYVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMA 1237

Query: 1121 AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFR 1180
              G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++
Sbjct: 1238 THGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYK 1297

Query: 1181 GEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
            GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GT
Sbjct: 1298 GEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGT 1357

Query: 1241 GILKI---RQRDAVPP 1253
            G+ K+     RD  PP
Sbjct: 1358 GLFKLLHKAHRDPSPP 1373


>gi|139948582|ref|NP_001077219.1| DNA-directed RNA polymerase III subunit RPC1 [Bos taurus]
 gi|187611407|sp|A4IF62.1|RPC1_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
            polymerase III subunit C1; AltName: Full=DNA-directed RNA
            polymerase III subunit A
 gi|134024541|gb|AAI34423.1| POLR3A protein [Bos taurus]
 gi|296472154|tpg|DAA14269.1| TPA: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Bos
            taurus]
          Length = 1390

 Score = 1216 bits (3147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 649/1276 (50%), Positives = 863/1276 (67%), Gaps = 54/1276 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKNTCHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSSFLQSFETAIEHNKEVEPLLGKAQENLNPLVVLNLFKRIPAEDIPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y             R E +C ND +V  +NSEL+SG + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCG-----------RGEDLCVNDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCRSEPALSKNELLLSAE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVED-IGWDDKSQILEEVTHKTSGI 881
              +       C ++FL  ++KF +    ++ +KIK   D  G +D       V ++   I
Sbjct: 951  SIMKKNEFLCCQDSFLQEIKKFIK----EVSEKIKKTRDKYGINDNGTTEPRVLYQLDRI 1006

Query: 882  TEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQG 941
            T  Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT G
Sbjct: 1007 TPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLG 1066

Query: 942  VPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLA 1001
            VPRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V      
Sbjct: 1067 VPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDC 1126

Query: 1002 SIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKI 1060
             I++ L +E I+   L +NA+ V+ SI  + K+++K   + V     + + P  + KS +
Sbjct: 1127 FILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDVAVHGEAVVCVTPRENSKSSM 1185

Query: 1061 HFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMG 1120
            ++ L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM 
Sbjct: 1186 YYVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMA 1237

Query: 1121 AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFR 1180
              G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++
Sbjct: 1238 THGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYK 1297

Query: 1181 GEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
            GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GT
Sbjct: 1298 GEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGT 1357

Query: 1241 GILKIRQ---RDAVPP 1253
            G+ K+     RD  PP
Sbjct: 1358 GLFKLLHKANRDPSPP 1373


>gi|351708991|gb|EHB11910.1| DNA-directed RNA polymerase III subunit RPC1 [Heterocephalus glaber]
          Length = 1392

 Score = 1216 bits (3147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1277 (50%), Positives = 861/1277 (67%), Gaps = 54/1277 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K +  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLRKKVSDKCR----KKSLCHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPMVSSFLQSFETAIEHNKEVEPLLGRAQENLNPLIVLNLFKRIPTEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH--RARI 343
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H  R R+
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLVRVRV 482

Query: 344  MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVA 403
             P RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A
Sbjct: 483  KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIA 542

Query: 404  STQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQL 460
            + QDFLT ++L+T KDTF+DRA    +   +  G D   RV LP PAILKPV LWTGKQ+
Sbjct: 543  AIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKVRVRLPHPAILKPVTLWTGKQI 602

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            FSV++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+ G 
Sbjct: 603  FSVILRPSDDNPVRANLRTKGKQYCGK-----------GEDLCVNDSYVTIQNSELMCGS 651

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L
Sbjct: 652  MDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGL 711

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
               K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+ 
Sbjct: 712  LKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLR 771

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
             L   NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PA
Sbjct: 772  ELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPA 831

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            AKGFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +
Sbjct: 832  AKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLT 891

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEI 820
            VR++ G I+QF+YG DG+DPA MEGK  EPL F R+L  ++A  P   +  LS   ++  
Sbjct: 892  VRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVYPCPSEPALSKNDLALS 950

Query: 821  VEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSG 880
             E  +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   
Sbjct: 951  SEAIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDR 1007

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            IT  QLE F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT 
Sbjct: 1008 ITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITL 1067

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRL 1000
            GVPRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V     
Sbjct: 1068 GVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDD 1127

Query: 1001 ASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP-PVDKSK 1059
              I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + I P    KS 
Sbjct: 1128 CFILVKLSLERIRLLRLEVNAESVRYSIC-TSKLRVKPGDVAVHGEAVVCITPRESSKSS 1186

Query: 1060 IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVM 1119
            +++ L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM
Sbjct: 1187 MYYVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVM 1238

Query: 1120 GAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTF 1179
               G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT+
Sbjct: 1239 ATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTY 1298

Query: 1180 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLG 1239
            +GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +G
Sbjct: 1299 KGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIG 1358

Query: 1240 TGILKIRQ---RDAVPP 1253
            TG+ K+     RD  PP
Sbjct: 1359 TGLFKLLHKANRDPNPP 1375


>gi|124486963|ref|NP_001074716.1| DNA-directed RNA polymerase III subunit RPC1 [Mus musculus]
 gi|187956633|gb|AAI51169.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
 gi|187956659|gb|AAI51170.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
 gi|223462631|gb|AAI51003.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
          Length = 1390

 Score = 1216 bits (3145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 648/1275 (50%), Positives = 860/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKSTCHYCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL--- 108
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L +   
Sbjct: 184  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 109  SERPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
            S +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  SGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGPD +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHMQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+ G + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCGKG-----------EDLCVNDSYVTIQNSELMCGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS   ++   E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVYPCQTEPALSKNDLTLTAE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++ F +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  AIMKKNEFLCCQDSFLQEIKTFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+K++LLVEG  L+AVM  
Sbjct: 1187 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKFKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1359 LFKLLHKANRDPKPP 1373


>gi|417406396|gb|JAA49858.1| Putative rna polymerase i large subunit [Desmodus rotundus]
          Length = 1390

 Score = 1216 bits (3145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 645/1275 (50%), Positives = 862/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKNICHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFK++   D  +L ++  
Sbjct: 184  KVVDPVVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKQIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ +QNGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL++G + 
Sbjct: 603  VILRPSDDSPVRANLRTKGKQYCGKG-----------EDLCVNDSYVTIQNSELMTGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RL++L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLSRLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCQSEPALSKNELILTTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMKKNEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  + K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     +D  PP
Sbjct: 1359 LFKLLHKADKDPSPP 1373


>gi|73953679|ref|XP_536399.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Canis lupus
            familiaris]
          Length = 1390

 Score = 1215 bits (3144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1275 (50%), Positives = 861/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKNICHYCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H A++ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVHLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCGKG-----------EDLCVNDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCQSEPALSKNELVLTTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++ F +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMKKTEFLCCQDSFLQEIKNFVKGISEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  + K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1359 LFKLLHKADRDPSPP 1373


>gi|301765986|ref|XP_002918413.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
            [Ailuropoda melanoleuca]
          Length = 1390

 Score = 1215 bits (3144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1275 (50%), Positives = 860/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKNICHYCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H A++ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVHLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCGKG-----------EDLCVNDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G    +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQSEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCQSEPALSKNELVLTTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++ F +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMKKTEFLCCQDSFLQEIKNFVKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  + K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1359 LFKLLHKADRDPSPP 1373


>gi|281340311|gb|EFB15895.1| hypothetical protein PANDA_006866 [Ailuropoda melanoleuca]
          Length = 1375

 Score = 1214 bits (3142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1275 (50%), Positives = 860/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 114  LKRPGLTYLQKRGLKKKISDKCR----KKNICHYCGAFNGTVKKC-GLLKIIHEKYKTNK 168

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 169  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 228

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 229  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 288

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 289  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 348

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGP+ +PGA  I  
Sbjct: 349  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQ 408

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H A++ P
Sbjct: 409  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKP 467

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 468  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 527

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 528  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVHLPPPTILKPVTLWTGKQIFS 587

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 588  VILRPSDDNPVRANLRTKGKQYCGK-----------GEDLCVNDSYVTIQNSELMSGSMD 636

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G    +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 637  KGTLGSGSKNNIFYILLRDWGQSEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 696

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 697  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 756

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 757  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 816

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 817  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 876

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 877  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCQSEPALSKNELVLTTE 935

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++ F +G  +K+ K     +  G +D       V ++   IT
Sbjct: 936  SIMKKTEFLCCQDSFLQEIKNFVKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 992

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 993  PTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1052

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1053 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1112

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  + K+++K   + V     + + P  + KS ++
Sbjct: 1113 ILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1171

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1172 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1223

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1224 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1283

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1284 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1343

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1344 LFKLLHKADRDPSPP 1358


>gi|2460208|gb|AAB86536.1| RNA polymerase III largest subunit [Homo sapiens]
          Length = 1391

 Score = 1214 bits (3141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 648/1276 (50%), Positives = 860/1276 (67%), Gaps = 53/1276 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKNICHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+  RPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCFRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ +QNGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCGKG-----------EDLCANDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCPSEPALSKNELILTTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHF GVASMNIT GV
Sbjct: 1008 PTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFGGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKA-HGMSIDKRHMMLLADLMTFR 1180
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM   HGMSID+RH+MLL+DLMT++
Sbjct: 1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVVNHGMSIDRRHVMLLSDLMTYK 1298

Query: 1181 GEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
            GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GT
Sbjct: 1299 GEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGT 1358

Query: 1241 GILKIRQ---RDAVPP 1253
            G+ K+     RD  PP
Sbjct: 1359 GLFKLLHKADRDPNPP 1374


>gi|451770412|ref|NP_001263425.1| DNA-directed RNA polymerase III subunit RPC1 [Danio rerio]
          Length = 1390

 Score = 1213 bits (3139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/1285 (49%), Positives = 866/1285 (67%), Gaps = 54/1285 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            +R P +  L+K  L K I  KC     K   C  C   NG VKK   +L IIH++ K   
Sbjct: 129  LRRPGLAYLQKRGLKKKISDKCR----KKTVCLNCNAFNGSVKKC-GLLKIIHEKYKSTK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL--- 108
                  V++ LQ F  AI H KE ++ +  A   LNP+ VL LF+R+ D D  +L +   
Sbjct: 184  KVVDPAVSDFLQSFDVAIEHNKEVESLLTRAQENLNPLVVLNLFRRIPDKDVPLLLMNPE 243

Query: 109  SERPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
            S +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  SGKPADLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILTYPE+V+  NIE +R+ ++NGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G +V+RH+ DGD+VLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHMQMKRFLKYGN-REKMAQELKFGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DR     +   +  G D   ++ LP PAILKP+ LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRTKACQIVASILVGKDEKIKISLPHPAILKPIRLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            ++++P  +  V  NL  K K Y  K            E +C ND FV   NSEL+ G + 
Sbjct: 603  LILKPSKSCPVMANLRTKGKQYCGK-----------GEDLCANDSFVVIHNSELMCGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G    +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQQEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L+   YE C+  I     G+LQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKQELLDAGYEKCDEYIDALKTGRLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFQKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVA+SFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  ++A     G+  LS  ++    +
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVYSCTGEPALSRNELLLTSD 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C + FL  +RKF +   +K+ K     +  G +D      +V ++   IT
Sbjct: 951  SIMKRKDFLCCKDTFLEEIRKFIKTVSEKVKKT---RDKYGINDNGTTEPKVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              QLE F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPII+A L+ ND+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKNISTPIISANLDTNDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDDTF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L ++ I+   L +NA+ V+ SI  T K+++K   ++V     + + P  + KS ++
Sbjct: 1128 ILVKLSLDRIRLLRLEVNAETVRYSIC-TSKLRVKPGDVQVHGEAVVCVSPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L SLK  LP V+V+GI  V R VI         + E   K+K++LLVEG  +++VM  
Sbjct: 1187 YVLQSLKQDLPKVVVQGIPEVSRAVI--------HIDEQSGKQKFKLLVEGDNMRSVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G++G KT SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLLADLM+++G
Sbjct: 1239 HGVNGSKTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            E+LGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKI---RQRDAVPPM--LKYGAPD 1261
            + K+     R+A PP   L + +PD
Sbjct: 1359 LFKLLHRSNREADPPRRPLLFDSPD 1383


>gi|403159566|ref|XP_003320172.2| DNA-directed RNA polymerase III subunit C1 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
 gi|375168152|gb|EFP75753.2| DNA-directed RNA polymerase III subunit C1 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
          Length = 1419

 Score = 1213 bits (3138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/1280 (50%), Positives = 838/1280 (65%), Gaps = 74/1280 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             R P +E L++  L K +   C     K + CP CG  NG VKK V  L IIH++ +  +
Sbjct: 142  FRRPNLENLQRQHLAKQVNTACR----KIITCPYCGATNGTVKK-VGALRIIHEKFRAKK 196

Query: 61   SLQE-------FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE--- 110
               E       F +A+  TKE    ++ A   +NP+ VL LF+R+T +DCE+L L     
Sbjct: 197  KADELAAFRDTFITAVKETKELGPHLHKAQEDMNPLRVLNLFRRITPSDCELLGLDPEVG 256

Query: 111  RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
            RPE+ I   I VPP+ IRPSV  + + +NE+D+T +L  II TN  ++  LV+       
Sbjct: 257  RPEEYIWQYIHVPPVCIRPSVAQEAA-TNEDDLTVKLTEIIFTNTLIKTGLVKGVPTQNI 315

Query: 171  LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
            +  WE +Q+ VA YIN+++ GVP  M V +P+ GF QRLKGK GRFRGNLSGKRV+++GR
Sbjct: 316  MEQWEFMQLSVAMYINAELPGVPSQMGV-KPIKGFCQRLKGKTGRFRGNLSGKRVDFSGR 374

Query: 231  TVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI----- 285
            TVISPDPNL ITEVA+P R+A+ILTYPERV+ HNI++LRQCI+NGPD +PGA  +     
Sbjct: 375  TVISPDPNLSITEVAVPDRVAKILTYPERVTAHNIDRLRQCIRNGPDIHPGANYLVAGST 434

Query: 286  RYPDGTA----RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRA 341
                G+A    R L    RN +A  L+ G  V+RHL DGDVVLFNRQPSLH++SIM HRA
Sbjct: 435  TNASGSALPFKRSLKFGNRNHVANTLRLGDTVERHLHDGDVVLFNRQPSLHKLSIMSHRA 494

Query: 342  RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEIL 401
            +I PWRT RFNE VC PYNADFDGDEMN+HVPQTEEARTEA  LM ++ NL TP+NGE +
Sbjct: 495  KIRPWRTFRFNECVCTPYNADFDGDEMNLHVPQTEEARTEATELMNIKYNLVTPRNGEPI 554

Query: 402  VASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLF 461
            +A+TQDF+T+SFL++RKD FYDR  FS +  Y+ D    +DLP P I KPV LWTGKQ+F
Sbjct: 555  IAATQDFITASFLLSRKDNFYDRQQFSQILQYLSDATLHIDLPPPVIWKPVRLWTGKQVF 614

Query: 462  SVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQL 521
            +VL+RP+ +  V VN+  K  T+         D       M PNDG++  +NSE++ G +
Sbjct: 615  NVLMRPNKDSPVKVNVEAKCATHQKAAPEYLPD-------MSPNDGWLVIQNSEIMCGVV 667

Query: 522  GKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELS 581
             KA +G G KD +++V+  D+G       MNRLAK+SARW+ N GFSIG+ DV P + LS
Sbjct: 668  DKAIVGGGKKDSIFAVINCDFGPDEAVKAMNRLAKVSARWLANMGFSIGVGDVTPGERLS 727

Query: 582  DKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGS 641
             +K  L+++ Y+  +  I++   GKL+  PG D  QTLEA+I+ +L+++R+  G+ CM  
Sbjct: 728  TQKNALVAKAYKETDELIQQSKAGKLETLPGRDLDQTLEAMISGVLSKVRDSLGEICMAE 787

Query: 642  LPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAA 701
            L   N+PLIM+ CGSKGS IN++QMVACVGQQ + G R P+GF DRSLPHF +KAKEP A
Sbjct: 788  LTRHNAPLIMATCGSKGSKINVAQMVACVGQQIISGNRIPDGFQDRSLPHFHKKAKEPPA 847

Query: 702  KGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSV 761
            KGFV NSF+SGL ATEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDL+ +YD+SV
Sbjct: 848  KGFVRNSFHSGLRATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLATRYDDSV 907

Query: 762  RNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIV 821
            RN+ G +VQF YGDDG+DP  +EG  GEP+ F R     KAT      R L P +++++V
Sbjct: 908  RNSVGGVVQFTYGDDGLDPTYLEG-DGEPVEFARTWRHTKATVSHLDGRGLHPYEITQLV 966

Query: 822  EKQLA-AYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIG----------WDDKSQI 870
               LA      +C++ F +S+  F    +  +     F +  G          WD+ + +
Sbjct: 967  TDGLAQPRFTTACTQRFRDSVLDFM--VERVVKPAANFRQSYGMYPALELEGDWDEYTDL 1024

Query: 871  LEEVTHKT-------SGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQM 923
               V+  +       + +T KQ+E F+  C+ +Y   +VE GTA+GA+GAQSIGEPGTQM
Sbjct: 1025 SAGVSEASKKIVINKTQVTLKQIETFLDHCWKKYVKAKVEPGTAVGAVGAQSIGEPGTQM 1084

Query: 924  TLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKT 983
            TLKTFHFAGVASMNIT GVPRIKEIIN +K I+ PII A L  N NE +AR+VK R+EKT
Sbjct: 1085 TLKTFHFAGVASMNITLGVPRIKEIINASKLINGPIINAPLVANHNERSARIVKARLEKT 1144

Query: 984  LLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKV 1043
             LG V   I+ + ++    + I +DMET+Q   L +  D +K SI+  PK+K+    I++
Sbjct: 1145 YLGDVTSVIEEMYSNDSMYLGIHIDMETVQRLQLEVTLDSIKWSIINAPKLKITADQIQI 1204

Query: 1044 LDFRKLEIFPPVDKS--------KIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKR 1095
            +  RK  I   VD +          + +L  L+ VLP V++KG+    R VI        
Sbjct: 1205 IP-RKNRIRVYVDTNLADGEKVLPFYQKLMFLRRVLPGVVIKGLPKAGRTVI-------- 1255

Query: 1096 KVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEIN 1155
                   K +Y LLVEG GL  VM  +G+ G  T  NHI E Q  LGIEAAR CII EI+
Sbjct: 1256 ---NKNSKNEYELLVEGYGLLDVMTTDGVVGTHTMPNHIMEAQSVLGIEAARNCIIKEIS 1312

Query: 1156 ETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAS 1215
             TM +HG+ +D RHMMLL D+M ++GEVLGITRFGI KM  SVLMLASFEKT DHLF+A+
Sbjct: 1313 YTMDSHGLKVDPRHMMLLGDIMCYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAA 1372

Query: 1216 VNGRDDRIEGVSECIIMGIP 1235
            +  + D IEGVSECIIMG P
Sbjct: 1373 LYSKRDAIEGVSECIIMGNP 1392


>gi|149690349|ref|XP_001504046.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Equus
            caballus]
          Length = 1390

 Score = 1212 bits (3136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1275 (50%), Positives = 862/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKNICQHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ +QNGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y             R E +C ND +V  +NSEL+SG + 
Sbjct: 603  VVLRPSDDSPVRANLRTKGKQYCG-----------RGEDLCANDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCRSEPALSKNELILTTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMKKNEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDRDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1359 LFKLLHKANRDPSPP 1373


>gi|343427900|emb|CBQ71425.1| probable RPO31-DNA-directed RNA polymerase III, 160 KD subunit
            [Sporisorium reilianum SRZ2]
          Length = 1400

 Score = 1212 bits (3135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/1280 (49%), Positives = 854/1280 (66%), Gaps = 65/1280 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             R P +E L +T   K++    +T+A K + CP+CGY NG VKK    L I+H++ +  +
Sbjct: 128  FRKPNLENLDRTRTFKAV----NTIARKVLYCPKCGYTNGTVKKQ-GQLKIVHEKFRAKK 182

Query: 61   SLQEF----ASAITHTKESKAAV----NVATYILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
            +  E     AS  T+ K     +    N A   LNP+  L LFKR++D DCE+L L    
Sbjct: 183  TAAEHDEFKASFSTNIKMGNGDISPHLNKAQEDLNPLKALDLFKRISDEDCELLGLRPEF 242

Query: 111  -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE+ I   I VPP+ IRPSV  DG+ +NE+D+T +L  +I TN+ L+  LV+      
Sbjct: 243  GRPEEYIWQYICVPPVCIRPSVAQDGA-TNEDDVTIKLTEVIFTNSLLKLGLVKGGKGTT 301

Query: 170  S---LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVE 226
            +   +  WE LQ+ VA YINS++ GVP      +P  GF QRLKGKQGRFRGNLSGKRV+
Sbjct: 302  TSQLVQQWEFLQLTVALYINSELPGVPVQPG-QKPSRGFCQRLKGKQGRFRGNLSGKRVD 360

Query: 227  YTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR-MI 285
            ++GRTVI PDPNLKI EVA+P R+A+ILTYPERV +HNIE+LRQ ++NG D +PGA  ++
Sbjct: 361  FSGRTVIGPDPNLKIDEVAVPQRVAKILTYPERVFEHNIEQLRQAVRNGTDVHPGANYLM 420

Query: 286  RYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIM 344
                G  R L +   R +LA +L+ G IV+RH+ DGD+VLFNRQPSLH++SIM HRA+I 
Sbjct: 421  DGKTGFKRFLKFPGMREELAQKLRVGDIVERHIRDGDIVLFNRQPSLHKLSIMSHRAKIR 480

Query: 345  PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAS 404
            PWRT R NE  CNPYNADFDGDEMNMHVPQTEEARTEA +LMGV++NL TP+NGE ++A+
Sbjct: 481  PWRTFRLNECACNPYNADFDGDEMNMHVPQTEEARTEATVLMGVKHNLVTPRNGEPIIAA 540

Query: 405  TQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVL 464
             QDF+T+S+LI+++D F+DRA FS +C Y  D   ++DLP PAI+KPV LWTGKQ+ S L
Sbjct: 541  IQDFITASYLISKRDRFFDRAQFSQICSYFADADLQIDLPPPAIMKPVRLWTGKQVMSCL 600

Query: 465  IRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKA 524
            IRP+      VNL  + +T+      T G  +     M PNDG++   NSE++ G   K+
Sbjct: 601  IRPNRKSPHLVNLEAQCRTFEKP---TGGHPK----DMSPNDGWLVIVNSEVMCGVFDKS 653

Query: 525  TLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKK 584
            T+G+G K+ ++ V+LRDYG  A    MNRLAK  ARW+ N GFS+GI+DV P   L D K
Sbjct: 654  TVGDGKKNSVFGVMLRDYGPDAAITAMNRLAKTCARWLANQGFSLGINDVIPGPNLRDNK 713

Query: 585  GKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW 644
               +   Y  C   I++   GKL+  PGCD  QTLE +I+ +L+ +R D G+ CM  L  
Sbjct: 714  DAKVEAAYTECLDLIEKAKHGKLENLPGCDQEQTLENMISGVLSGVRSDVGEICMTELSR 773

Query: 645  RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 704
             N+PL+M+ CGSKGS IN++QMVACVGQQ + G R PNGF DRSLPHFP+K+K+P +KGF
Sbjct: 774  HNAPLVMAVCGSKGSKINVAQMVACVGQQIIAGSRVPNGFQDRSLPHFPKKSKDPPSKGF 833

Query: 705  VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
            V NSF+SGLS TEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDLS  YD SVRN+
Sbjct: 834  VRNSFFSGLSPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDLSVRNS 893

Query: 765  GGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQ 824
             G +VQF+YGDDG+DPA +EG +  P+   RL     A       R L P ++ E+V+++
Sbjct: 894  VGGVVQFIYGDDGLDPAELEG-NAMPIEPFRLWRHCLAITHHIEGRGLYPYEIMEVVDRE 952

Query: 825  LAA-YGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDI-GWDDKSQILEEVTHKTSGIT 882
            L +    ++C++ +L+S+R+F      K   +++    + G +++ +  +E T  + G  
Sbjct: 953  LGSERFVKTCTQKYLDSVREFLSENVYKRAVQMRSAFGMYGAEEREEHWDEHTDLSLGAD 1012

Query: 883  EKQLEV--------------FIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTF 928
              Q  +              F+Q C+ +Y   ++E G+A+GA+GAQSIGEPGTQMTLKTF
Sbjct: 1013 RDQWAIVNNKTKIKQVAILEFLQQCYKKYMKAKIEPGSAVGAVGAQSIGEPGTQMTLKTF 1072

Query: 929  HFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQV 988
            HFAGVASMN+T GVPRIKEIIN AK I+TPII A+L    +E  AR+VKGRIEKT LG +
Sbjct: 1073 HFAGVASMNVTLGVPRIKEIINAAKSINTPIIEAKLVSEKSERTARIVKGRIEKTYLGDI 1132

Query: 989  AKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR- 1047
            A  I+    ++   + + +DM+ IQ   L I  + +K +IV  PK+K+K++ + V+  + 
Sbjct: 1133 ASVIEEAWAAQYTYLGVHIDMDAIQKLQLEITLNDIKWAIVNAPKLKIKEERVMVVPKKN 1192

Query: 1048 KLEIFPP---VDK-SKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEK 1103
            ++ I+ P   +DK  ++++ L +LK  LP +IVKGI    R VI++            EK
Sbjct: 1193 RIRIYVPPEGLDKEGEVYYNLKALKRALPSIIVKGIPQATRAVISD------------EK 1240

Query: 1104 KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGM 1163
               +LLVEG GL  VM  EG+ G  T +NH+ E+Q  LGIEAAR  +  EI  TM AHGM
Sbjct: 1241 GTRKLLVEGYGLLKVMTTEGVIGTLTHTNHVMEMQTVLGIEAARTSVYREIEHTMSAHGM 1300

Query: 1164 SIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRI 1223
            SID RH+MLLAD MT++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+A++ G+ D +
Sbjct: 1301 SIDPRHIMLLADTMTYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAALFGKKDEV 1360

Query: 1224 EGVSECIIMGIP-MPLGTGI 1242
             GVSE IIMG P   +GTG+
Sbjct: 1361 LGVSESIIMGNPAQTVGTGM 1380


>gi|320170274|gb|EFW47173.1| polymerase III polypeptide A [Capsaspora owczarzaki ATCC 30864]
          Length = 1472

 Score = 1209 bits (3129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1354 (48%), Positives = 862/1354 (63%), Gaps = 137/1354 (10%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            +RNP +E L K  + K + +KC  + +    CP C   NG VKK VA + + HD  +++E
Sbjct: 127  LRNPLLEMLHKRAICKKVNEKCRRLHN----CPYCNAPNGPVKK-VAFMKLSHDTYRMSE 181

Query: 61   S---------LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                      L  F  A+   K+ +  +  A   LNP+ VL LF+ + + D E+L L   
Sbjct: 182  KQRSDDRVDFLNSFQEAVARNKDLRPLLTKAMDELNPLRVLRLFEAIPNEDVELLGLDPL 241

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              RPE+LI+T + VPP  IRPSV MD G+ SNE+D+T +L  I   N+ +++ L    + 
Sbjct: 242  KGRPERLILTRMLVPPACIRPSVAMDAGAGSNEDDLTMKLSEIAFINSVIRKSLSNPTNM 301

Query: 168  FKSLAG-WETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVE 226
              +L   WE LQ   A YIN DV       Q  +P+ GF QRLKGK GRFRGNLSGKRV+
Sbjct: 302  IANLVEEWEHLQNVCAMYINGDVAN-QLPQQNLKPVRGFCQRLKGKTGRFRGNLSGKRVD 360

Query: 227  YTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIR 286
            ++ RTVISPDPNL+I EVA+P  +A+ILT+PERV+ HNIE++RQ I  G D+YPGA  + 
Sbjct: 361  FSSRTVISPDPNLRIDEVAVPEHVAKILTFPERVTSHNIEEMRQLIIAGTDQYPGANYVE 420

Query: 287  YP-------------------------------------------DGTARVL-----YGK 298
                                                          G A  L     Y K
Sbjct: 421  LNRGAGGGLTAAGTVATAGGASTSAAAGATAAAAAAAGSSAAGQVKGAAAPLVNPKRYLK 480

Query: 299  F--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 356
            +  R ++A +L+ G +V+RHL  GD+ LFNRQPSLH++SIMCH  RI P+RT RFNE VC
Sbjct: 481  YGNRQEIARDLRVGDVVERHLRTGDIALFNRQPSLHKLSIMCHFVRISPFRTFRFNECVC 540

Query: 357  NPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
             PYNADFDGDEMN+HVPQTEEAR EA++LMGV++N+ TP+NGE L+A+ QDF+T ++L++
Sbjct: 541  TPYNADFDGDEMNLHVPQTEEARAEAMVLMGVKSNMITPRNGEPLIAAIQDFITGAYLLS 600

Query: 417  RKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
            RKD F D++ F+ +C  M D   ++D+P PAILKPV LWTGKQLFSVL+RP+   +  +N
Sbjct: 601  RKDLFLDQSMFTQLCACMSDAGIQIDIPPPAILKPVRLWTGKQLFSVLMRPNKQCKARMN 660

Query: 477  LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
            L    +TYS K      DEE     MC NDGFV  RNSEL+SG + KA LG+G+K  ++ 
Sbjct: 661  LRTASRTYSKK------DEE-----MCKNDGFVNIRNSELLSGSMDKALLGSGSKSTIFY 709

Query: 537  VLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCN 596
            VLLRD+G    +  M+RLAKL++R++ N+GFSIGI DV P  +L   K  ++   Y  C+
Sbjct: 710  VLLRDFGEQTAADAMSRLAKLASRFLCNYGFSIGIGDVTPTLKLLQAKEVMLQVGYTKCD 769

Query: 597  VKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
              I+ +    L  +PGC   QTLE+VI   L++IREDAGK C+  L   N+PL M+ CGS
Sbjct: 770  GYIEAFRGNALPSQPGCSPEQTLESVINGELSQIREDAGKMCLEELDKSNAPLRMALCGS 829

Query: 657  KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
            KGS INISQM+ACVGQQ+V G R PNGF DR+LPHFP+K++ PAAKGFV NSF++GLS T
Sbjct: 830  KGSNINISQMIACVGQQTVSGTRIPNGFEDRALPHFPKKSRFPAAKGFVRNSFFTGLSPT 889

Query: 717  EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDD 776
            EFFFHTMGGREGLVDTAVKTA+TGYM RRL+KALEDLS+QYD++VR++ G +VQ  YGDD
Sbjct: 890  EFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSVQYDSTVRDSIGGVVQLRYGDD 949

Query: 777  GMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCS-- 834
             +DPA+MEG S +P++F R+   V+   P    + L P ++++   K +  Y +E  +  
Sbjct: 950  ELDPASMEG-SNKPVDFKRVFEHVRNNSPAGSDQSLFPYEITQFSHKVILLYLEERRALQ 1008

Query: 835  ------------EAFLNSLRKFFEGQQDKL----DKKIKFVEDIGWDDKS---------- 868
                          F   LR F +   D L    DK+      IG  DKS          
Sbjct: 1009 RPGTRAMHDEPVPQFYEELRGFLQSVADSLASMRDKRGLDPYSIGPLDKSDPRSVALSES 1068

Query: 869  -QILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKT 927
             ++ + +  K +  T KQLE F + C S+Y+   +EAGTA+GA+GAQSIGEPGTQMTLKT
Sbjct: 1069 ARLQQSIVDKVAKYTSKQLEGFRELCVSKYKRATIEAGTAVGAVGAQSIGEPGTQMTLKT 1128

Query: 928  FHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQ 987
            FHFAGVASMNIT GVPRIKEIIN +K ISTPIITAEL     E+ AR+VKGR E T LG+
Sbjct: 1129 FHFAGVASMNITLGVPRIKEIINASKVISTPIITAELLDQSKESIARIVKGRTESTRLGE 1188

Query: 988  VAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR 1047
            ++  ++ + T   + + + L    I+   L I+A+ VK +++ +     K + I V    
Sbjct: 1189 ISDFMREIFTPHQSFLHVRLSRSQIRQLCLQIDAEQVKNALLAS-----KPEQIHVASPF 1243

Query: 1048 KLEIFPPVDK----------SKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKV 1097
             L I PPV+K          S   F +  L + +  VIV GI TV+R VI +K       
Sbjct: 1244 DLCIKPPVEKDSSLSELKKLSSSFFSIQHLNHAIGNVIVSGISTVKRAVINQK------- 1296

Query: 1098 KENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINET 1157
                   KY LLVEGT L AVMG EG+D  +TKSNHI E++ +LGIEAAR  I++EI  T
Sbjct: 1297 ----TPGKYNLLVEGTNLLAVMGIEGVDWMRTKSNHIMEMKDSLGIEAARSTIMNEIQYT 1352

Query: 1158 MKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVN 1217
            M++HGMSID RH+MLLADLMT +G+VLGITRFGI KM +SVLMLASFEKT DHLF+AS+ 
Sbjct: 1353 MQSHGMSIDTRHLMLLADLMTSKGDVLGITRFGIAKMKESVLMLASFEKTTDHLFDASLY 1412

Query: 1218 GRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAV 1251
            G+ D + GVSECIIMGIPM +GTG+ K+ QR AV
Sbjct: 1413 GQTDSVRGVSECIIMGIPMTIGTGLFKLLQRQAV 1446


>gi|156717272|ref|NP_001096178.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Xenopus
            (Silurana) tropicalis]
 gi|134025743|gb|AAI35597.1| polr3a protein [Xenopus (Silurana) tropicalis]
          Length = 1390

 Score = 1209 bits (3128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/1275 (50%), Positives = 861/1275 (67%), Gaps = 52/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K T+
Sbjct: 128  LKRPGLTYLQKRGLKKKISDKCR----KKTVCLYCGAYNGSVKKC-GLLKIIHEKYKTTK 182

Query: 61   S---------LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                      LQ F +AI H KE ++ +  A   LNP+ VL L +++   D  +L ++  
Sbjct: 183  KVVDPMVSHFLQSFDTAIEHNKEVESLLGRAQENLNPLIVLNLLRQIPAEDIPLLLMNPE 242

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 243  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKT 302

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 303  QMIMEDWDFLQLQCALYINSELSGIPMNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 362

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  N++ +R+ +QNGPD +PGA  I  
Sbjct: 363  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPDVHPGANFIQQ 422

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A EL+ G IV+RHL DGD+VLFNRQPSLH++SIM H AR+ P
Sbjct: 423  RHTQMKRFLKYGN-REKIAQELRFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKP 481

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EA +LMG + NL TP+NGE L+A+ 
Sbjct: 482  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEAYVLMGTKANLVTPRNGEPLIAAI 541

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT+++L+T KDTF+DRA    +   +  G D   +V LP PAILKPV LWTGKQ+FS
Sbjct: 542  QDFLTAAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFS 601

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            ++++P  +  V  NL  K K Y  K            E +C ND +V  +NSEL+ G L 
Sbjct: 602  LILQPSHDNPVRANLRTKGKQYCGK-----------GEDLCHNDSYVTIQNSELMCGSLD 650

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G    +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 651  KGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVFLSNRGFSIGIGDVTPGQGLLK 710

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K  L+   Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 711  AKQDLLDAGYKKCDEYIEALNTGKLQPQPGCSAEETLEALILRELSVIRDHAGSACLREL 770

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 771  DKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 830

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 831  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 890

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  VKA  P + +  LS  ++    E
Sbjct: 891  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLENVKAVYPCSEEPALSKNELILTSE 949

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C +++L  ++KF  G  +++ K     +  G +D       V ++   IT
Sbjct: 950  SIMKKTEFLCCQDSYLQEIKKFVTGVSERIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1006

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              QLE F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1007 PTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1066

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1067 PRIKEIINASKNISTPIITAHLDIDDDADFARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1126

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            +++ L +E I+   L +NA+ V+ SI  + K+++K   I V     L + P  + KS ++
Sbjct: 1127 LLVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDIAVHGEAVLCVTPRENSKSSMY 1185

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L SLK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L++VM  
Sbjct: 1186 YVLQSLKEDLPKVVVQGIPEVARAVI--------HIDEQSGKEKYKLLVEGDNLRSVMAT 1237

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLLADLMT++G
Sbjct: 1238 HGVKGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMTYKG 1297

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1298 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1357

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     +D  PP
Sbjct: 1358 LFKLLHKADKDPSPP 1372


>gi|328858469|gb|EGG07581.1| hypothetical protein MELLADRAFT_47986 [Melampsora larici-populina
            98AG31]
          Length = 1421

 Score = 1207 bits (3122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/1279 (49%), Positives = 834/1279 (65%), Gaps = 73/1279 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             R P +E L++    K +   C     K + CP CG  NG+VKK V  L I+H++ +  +
Sbjct: 143  FRRPNLENLQRQHYAKQVNTACR----KVLTCPYCGATNGIVKK-VGALRIVHEKFRAKK 197

Query: 61   SLQE-------FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE--- 110
               E       F +AI  T+E    ++ A   +NP+ VL LF+R+T +DCE+L L     
Sbjct: 198  KADELEAFRDTFINAIKETRELAPHLHKAQEDMNPLRVLNLFRRVTPSDCELLGLDPEVG 257

Query: 111  RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
            RPE+ I   I VPP+ IRPSV  + + +NE+D+T +L  +I TN  ++  LV+       
Sbjct: 258  RPEEYIWQYIHVPPVCIRPSVTQEAA-TNEDDVTVKLTEMIFTNTLIKTGLVKGVPTQNI 316

Query: 171  LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
            +  WE LQ+ VA YIN+++ GVP  M  A+P+ GF QRLKGK GRFRGNLSGKRV+++GR
Sbjct: 317  MEQWEFLQLSVAMYINAELPGVPSQMG-AKPIKGFCQRLKGKTGRFRGNLSGKRVDFSGR 375

Query: 231  TVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI--RYP 288
            TVI PDPNL ITEVA+P RMA++LTYPERV+ HN+++LRQCI+NGPD +PGA  +     
Sbjct: 376  TVIGPDPNLSITEVAVPDRMAKVLTYPERVTAHNLDRLRQCIRNGPDVHPGANYLIASGA 435

Query: 289  DGTA-------RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRA 341
             GTA       R L    RNQ+A  L+ G  V+RHL DGDVVLFNRQPSLH++SIM HRA
Sbjct: 436  PGTAGAATQFKRSLRFGNRNQIANTLRMGDTVERHLHDGDVVLFNRQPSLHKLSIMSHRA 495

Query: 342  RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEIL 401
            +I PWRTLRFNE VC PYNADFDGDEMN+HVPQTEEARTEA  LM V+ NL TP+NGE +
Sbjct: 496  KIRPWRTLRFNECVCTPYNADFDGDEMNLHVPQTEEARTEATELMNVKYNLVTPRNGEPI 555

Query: 402  VASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLF 461
            +A+TQDF+T+S+L++RKD FYDR  F+    Y+ D    +DLP P I KP+ LWTGKQ+F
Sbjct: 556  IAATQDFITASYLLSRKDNFYDRQQFTQALQYLSDATLHIDLPPPVIWKPIRLWTGKQVF 615

Query: 462  SVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQL 521
            +VL+RP+    V VN+  K  T+   L     D       M PNDG++  +NSE++ G +
Sbjct: 616  NVLMRPNKASPVKVNIEAKCATHHKALPEFLPD-------MSPNDGWLVIQNSEIMCGVV 668

Query: 522  GKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELS 581
             KA +G G KD +++V+ RDYG       MNRLAK+SARW+ N GFSIG+ DV P + LS
Sbjct: 669  DKAIVGGGKKDSIFAVINRDYGPDEAVKAMNRLAKVSARWLANMGFSIGVGDVTPGERLS 728

Query: 582  DKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGS 641
             +K  L+++ Y+  N  IK    G+LQ  PG D  QTLEA+I+ +L+++R+  G  CM  
Sbjct: 729  TQKESLVAKAYKETNDLIKSSKAGQLQTLPGRDQDQTLEAMISGVLSKVRDSLGVICMAE 788

Query: 642  LPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAA 701
            L   N+PLIM+ CGSKGS IN++QMVACVGQQ + G R P+GF DRSLPHF +KAKEP A
Sbjct: 789  LTRHNAPLIMATCGSKGSTINVAQMVACVGQQIISGNRIPDGFQDRSLPHFHKKAKEPPA 848

Query: 702  KGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSV 761
            KGFV NSF+SGL ATEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDLS +YD+SV
Sbjct: 849  KGFVRNSFHSGLRATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLSTRYDDSV 908

Query: 762  RNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIV 821
            RN+ G +VQF YGDDG+DP  +EG  GEP+ F R     KAT      R L P ++ + V
Sbjct: 909  RNSVGGVVQFTYGDDGLDPTYLEG-DGEPVEFARTWRHSKATISHLDGRGLYPYEIVQTV 967

Query: 822  EKQLAA--YGKESCSEAFLNSLRKFFEGQQDKLDKKIK--------FVEDIGWDDKSQIL 871
             K+LA   + K +C+  F +S+  F      K     +           D  WD+++ + 
Sbjct: 968  AKRLAEPRFAK-ACTTRFTDSVLNFITNSVAKPAATYRASYGMYPAMEMDGDWDEETDLS 1026

Query: 872  EEVT-------HKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMT 924
              VT       +KT  +T KQ++ F+  C+ +Y   +VE GTA+GA+GAQSIGEPGTQMT
Sbjct: 1027 AGVTGNKKIVANKTQ-VTLKQIDTFLDYCWVKYVKAKVEPGTAVGAVGAQSIGEPGTQMT 1085

Query: 925  LKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTL 984
            LKTFHFAGVASMNIT GVPRIKEIIN +K I+ PII A L  N +E AAR+VK R+EKT 
Sbjct: 1086 LKTFHFAGVASMNITLGVPRIKEIINASKVINGPIINAPLVANQSERAARIVKARLEKTY 1145

Query: 985  LGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL 1044
            LG +   I+ + ++    + I +DM+T++   L +  D +K SIV  PK+K+++  I+V+
Sbjct: 1146 LGDITSVIEGMYSNESMYVGIHIDMDTVRRLQLEVTLDTIKWSIVNAPKLKIREDQIQVI 1205

Query: 1045 DFRKLEIFPPVDKS--------KIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRK 1096
              RK  I   VD            + +L  L+ VLP V++KG+    R VI         
Sbjct: 1206 P-RKNRIRVYVDGVLADGENVLPFYQKLMFLRRVLPGVVIKGLSKAGRTVI--------- 1255

Query: 1097 VKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINE 1156
                    +Y LLVEG GL+ VM  +G+ G  T  NHI E Q  LGIEA R CII EI+ 
Sbjct: 1256 --NKNTSNEYELLVEGYGLREVMTTDGVVGTHTMPNHIMEAQSILGIEAGRNCIIKEISY 1313

Query: 1157 TMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASV 1216
            TM +HG+ +D RHMMLL D+M ++GEVLGITRFG+ KM  S    +SFEKT DHLF+A++
Sbjct: 1314 TMDSHGLKVDPRHMMLLGDIMCYKGEVLGITRFGVAKMKDSASFFSSFEKTTDHLFDAAL 1373

Query: 1217 NGRDDRIEGVSECIIMGIP 1235
              + D IEGVSECIIMG P
Sbjct: 1374 YSKRDAIEGVSECIIMGNP 1392


>gi|345309868|ref|XP_001514706.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1
            [Ornithorhynchus anatinus]
          Length = 1489

 Score = 1206 bits (3121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/1244 (51%), Positives = 847/1244 (68%), Gaps = 48/1244 (3%)

Query: 32   CPRCGYINGMVKKAVAVLGIIHDRSK---------VTESLQEFASAITHTKESKAAVNVA 82
            C  CG  NG VKK   +L IIH++ K         V+  LQ F +AI + KE +  +  A
Sbjct: 255  CHHCGAFNGTVKKC-GLLKIIHEKYKTNKKVVDPVVSNFLQSFETAIEYNKEVEPLLGRA 313

Query: 83   TYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMD-GSQS 138
               LNP+ VL LFKR+   D  +L ++    +P  LI+T + VPP+ IRPSV+ D  S +
Sbjct: 314  QENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGT 373

Query: 139  NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQV 198
            NE+D+T +L  II  N  +++  +        +  W+ LQ++ A YINS++ G+P +M  
Sbjct: 374  NEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAP 433

Query: 199  ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
             +   GFVQRLKGKQGRFRGNLSGKRV+++GRTVISPDPNL+I EVA+P+ +A+ILT+PE
Sbjct: 434  KKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPE 493

Query: 259  RVSDHNIEKLRQCIQNGPDKYPGARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
            +V+  NI  +R+ ++NGP+ +PGA  I  R+      + YG  R ++A ELK G IV+RH
Sbjct: 494  KVNKANISFMRKLVRNGPEVHPGANFIQQRHMQMKRFLKYGN-REKMAQELKYGDIVERH 552

Query: 317  LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
            L DGDVVLFNRQPSLH++SIM H AR+ P RT RFNE VC PYNADFDGDEMN+H+PQTE
Sbjct: 553  LIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTE 612

Query: 377  EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
            EA+ EAL+LMG + NL TP+NGE L+A+ QDFLT ++L+T KDTF+DRA    +   +  
Sbjct: 613  EAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKTCQIIASILV 672

Query: 437  GMD---RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
            G D   +V LP P ILKPV LWTGKQ+FS+++RP     V  NL  K K Y         
Sbjct: 673  GKDEKIKVRLPPPTILKPVTLWTGKQVFSLILRPSDASPVRANLRTKGKQYCG------- 725

Query: 494  DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
                R E +C ND +V  +NSEL+SG + K TLG+G+K+ ++ +LLRD+G    +  M+R
Sbjct: 726  ----RGEDLCVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQLEAADAMSR 781

Query: 554  LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
            LA+L+  ++ N GFSIGI DV P + L   K +L++  Y+ C+  I+  N GKLQ +PGC
Sbjct: 782  LARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGC 841

Query: 614  DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
             A +TLEA+I   L+ IR+ AG AC+  L   NSPL+M+ CGSKGS INISQM+ACVGQQ
Sbjct: 842  TAEETLEALILKELSVIRDHAGSACLRELDKSNSPLVMAVCGSKGSFINISQMIACVGQQ 901

Query: 674  SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
            ++ G R P+GF +RSLPHF + +K PAAKGFVANSFYSGL+ TEFFFHTM GREGLVDTA
Sbjct: 902  AISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTA 961

Query: 734  VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
            VKTA+TGYM RRL+K+LEDL  QYD +VR++ G I+QF+YG DG+DPA MEGK  EPL F
Sbjct: 962  VKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEF 1020

Query: 794  DRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLD 853
             R+L  +KA  P   +  LS  ++    E  +       C ++FL  ++KF +   +K+ 
Sbjct: 1021 KRVLDNIKAVFPCQSEPALSKNELVLTTESIMKKNEFLCCQDSFLQEIKKFIKVVSEKIK 1080

Query: 854  KKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGA 913
            K     +  G +D       V ++   IT  QLE F++TC  +Y   ++E G+A+GA+ A
Sbjct: 1081 KT---RDKYGINDNGTTEPRVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCA 1137

Query: 914  QSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAA 973
            QSIGEPGTQMTLKTFHFAGVASMNIT GVPRIKEIIN +K ISTPIITA+L+ +D+ + A
Sbjct: 1138 QSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDSDDDSDFA 1197

Query: 974  RVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPK 1033
            R+VKGRIEKTLLG++++ I+ V       I++ L +E I+   L +NA+ V+ SI  + K
Sbjct: 1198 RLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICMS-K 1256

Query: 1034 IKLKQQHIKVLDFRKLEIFPPVD-KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEK 1092
            +++K   + V     L + P  + KS +++ L  LK  LP V+V+GI  V R VI     
Sbjct: 1257 LRVKPGDVAVHGEAVLCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVI----- 1311

Query: 1093 EKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIID 1152
                + E   K+KY+LLVEG  L+AVM   G+ G KT SN+ +EV++TLGIEAAR  II+
Sbjct: 1312 ---HIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTKTTSNNTYEVEKTLGIEAARTTIIN 1368

Query: 1153 EINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLF 1212
            EI  TM  HGMSID+RH+MLL+DLMT++GEVLGITRFG+ KM +SVLMLASFEKTADHLF
Sbjct: 1369 EIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLF 1428

Query: 1213 NASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQ---RDAVPP 1253
            +A+  G+ D + GVSECIIMGIPM +GTG+ K+     RD  PP
Sbjct: 1429 DAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADRDPNPP 1472


>gi|443899688|dbj|GAC77017.1| RNA polymerase III, large subunit [Pseudozyma antarctica T-34]
          Length = 1400

 Score = 1206 bits (3120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1281 (49%), Positives = 852/1281 (66%), Gaps = 73/1281 (5%)

Query: 4    PKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR---SKVTE 60
            P +E L +T   K++    +T+A K + CP+CGY NG VKK    L I+H++    K   
Sbjct: 131  PNLENLDRTRTFKAV----NTIARKVLYCPKCGYTNGTVKKQ-GQLKIVHEKFRAKKTAA 185

Query: 61   SLQEF-ASAITHTKESKAAV----NVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RP 112
              +EF AS  T+ K     +    N A   LNP+  L LFKR++D DCE+L L     RP
Sbjct: 186  EHEEFRASFATNIKMGNGDITPHLNKAQEDLNPLKALDLFKRISDEDCELLGLRPEFGRP 245

Query: 113  EKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS-- 170
            E+ I   I VPP+ IRPSV  DG+ +NE+D+T +L  II TN+ L+  LV+      +  
Sbjct: 246  EEYIWQYICVPPVCIRPSVAQDGA-TNEDDVTIKLTEIIFTNSLLKLGLVKGGKGTTTSQ 304

Query: 171  -LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  WE LQ+ VA YINS++ GVP +    +P  GF QRLKGKQGRFRGNLSGKRV+++G
Sbjct: 305  LVQQWEFLQLTVALYINSELPGVP-TQPGQKPSRGFCQRLKGKQGRFRGNLSGKRVDFSG 363

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYP 288
            RTVI PDPNLKI EVA+P R+A+ILTYPERV +HNIE+LRQ ++NG D +PGA  ++   
Sbjct: 364  RTVIGPDPNLKIDEVAVPQRVAKILTYPERVFEHNIEQLRQAVRNGTDVHPGANYLMDGK 423

Query: 289  DGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
             G  R L +   R +LA +L+ G +V+RH+ DGD+VLFNRQPSLH++SIM HR ++ PWR
Sbjct: 424  TGFKRFLKFPGMREELAQKLRVGDVVERHIRDGDIVLFNRQPSLHKLSIMSHRVKVRPWR 483

Query: 348  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQD 407
            T R NE  CNPYNADFDGDEMNMHVPQTEEARTEA +LMGV++NL TP+NGE +VA+ QD
Sbjct: 484  TFRLNECACNPYNADFDGDEMNMHVPQTEEARTEATILMGVKHNLVTPRNGEPIVAAIQD 543

Query: 408  FLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRP 467
            F+T+S+LI+++D F+DRA FS +C Y  D    +D+P PAI+KPV LWTGKQ+ S LIRP
Sbjct: 544  FITASYLISKRDRFFDRAQFSQICSYFADANLHIDIPPPAIMKPVRLWTGKQVMSCLIRP 603

Query: 468  HANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLG 527
            ++     VNL  + +T+      T G  +     M PNDG++   NSE++ G   K+T+G
Sbjct: 604  NSKSPHIVNLEAQCRTFEKP---TGGHPK----DMSPNDGWLVIVNSEVMCGVFDKSTVG 656

Query: 528  NGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKL 587
            +G K+ ++ V+LRDYG  A    MNRLAK  ARW+ N GFS+GI+DV P   L   K   
Sbjct: 657  DGKKNSVFGVMLRDYGPDAAITAMNRLAKTCARWLANQGFSLGINDVIPGPNLRKNKDAK 716

Query: 588  ISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNS 647
            +   Y  C   I++   GKL+  PGCD  QTLE +I+ +L+ +R D G+ CM  L   N+
Sbjct: 717  VEAAYAECLDLIEKAKRGKLENLPGCDQEQTLENMISGVLSGVRSDVGEICMTELSRHNA 776

Query: 648  PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVAN 707
            PL+M+ CGSKGS IN++QMVACVGQQ + G R PNGF DRSLPHFP+K+K+P +KGFV N
Sbjct: 777  PLVMAFCGSKGSKINVAQMVACVGQQIIAGSRVPNGFQDRSLPHFPKKSKDPLSKGFVRN 836

Query: 708  SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
            SF+SGL+ TEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDLS  YD SVRN+ G 
Sbjct: 837  SFFSGLTPTEFLFHGISGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDLSVRNSVGG 896

Query: 768  IVQFLYGDDGMDPANMEGKSG--EPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQL 825
            +VQF+YGDDG+DPA +EG +   EP    R  + +    P  G   L P ++ EIV+++L
Sbjct: 897  VVQFIYGDDGLDPAELEGNAMPIEPFRLWRHCIAITRHLPGRG---LFPYEIMEIVKREL 953

Query: 826  AAYG-KESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIG----------WDDKSQILEEV 874
             +     +C++ + +S+ +F    ++   + +   E  G          WD+ + +    
Sbjct: 954  TSPKFVNTCTQKYRDSVHEFL--HENVFKRAVATREAFGMYGAEEREEHWDEHTDLSIGA 1011

Query: 875  THKTSGITEKQLEV-------FIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKT 927
                  I + + +V       F+Q C+ +Y   ++E G+A+GA+GAQSIGEPGTQMTLKT
Sbjct: 1012 NRDQWAIVDNKTKVKEAAVLAFLQQCYIKYMRAKIEPGSAVGAVGAQSIGEPGTQMTLKT 1071

Query: 928  FHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQ 987
            FHFAGVASMN+T GVPRIKEIIN AK I+TPII A+L    +E AAR+VKGRIEKT LG 
Sbjct: 1072 FHFAGVASMNVTLGVPRIKEIINAAKVINTPIIEAKLVSEKSERAARIVKGRIEKTYLGD 1131

Query: 988  VAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR 1047
            +A  I+    ++   + + +DM+ IQ   L I  + +K +IV  PK+K+K++ + V+  +
Sbjct: 1132 IASVIEEAWAAQYTYLGVHIDMDAIQKLQLEITLNDIKWAIVNAPKLKIKEERVMVVPKK 1191

Query: 1048 -KLEIFPP---VDK-SKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGE 1102
             ++ I+ P   VDK S++++ L +LK  LP ++VKGI    R VI++            E
Sbjct: 1192 NRIRIYVPPEGVDKESEVYYNLKALKRALPSIVVKGIPQATRAVISD------------E 1239

Query: 1103 KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHG 1162
            K   +LLVEG GL  VM  EG+ G +T +NH+ E+Q  LGIEAAR  +  EI  TM AHG
Sbjct: 1240 KGTRKLLVEGYGLLKVMTTEGVIGTQTHTNHVMEMQSVLGIEAARTSVYREIETTMSAHG 1299

Query: 1163 MSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDR 1222
            MSID RH+MLLAD MT++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+A++ G+ D 
Sbjct: 1300 MSIDPRHIMLLADTMTYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAALFGKKDE 1359

Query: 1223 IEGVSECIIMGIP-MPLGTGI 1242
            + GVSE IIMG P   +GTG+
Sbjct: 1360 VLGVSESIIMGNPAQTVGTGM 1380


>gi|432923404|ref|XP_004080458.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Oryzias
            latipes]
          Length = 1390

 Score = 1206 bits (3119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/1270 (50%), Positives = 858/1270 (67%), Gaps = 55/1270 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I +KC     K   C  C   NG VKK   +L IIH++ K   
Sbjct: 129  LKRPNLAYLQKRGLKKKISEKCR----KRTVCLNCSAFNGTVKKC-GLLKIIHEKYKTTK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+E +Q F +AI H K  +  +N A   LNP+ VL LF+R+ D D  +L ++  
Sbjct: 184  KVVDPFVSEFMQSFDTAIEHNKLIEPLLNRAQENLNPLVVLNLFRRIPDEDIPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LIIT + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPADLIITRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMSGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIR- 286
            +GRTVISPDPNL+I EVA+P+ +A+ILTYPE V+  N+E +R+ ++NGPD +PGA  I+ 
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTYPEMVNKANLELMRKLVRNGPDVHPGANFIQN 423

Query: 287  YPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW 346
              +   R L    R ++A EL+ G IV+RH+ DGDVVLFNRQPSLH++SIM H AR+ P 
Sbjct: 424  RRNQIKRFLKYGNREKIAQELRFGDIVERHMIDGDVVLFNRQPSLHKLSIMAHIARVKPH 483

Query: 347  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQ 406
            RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ Q
Sbjct: 484  RTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALILMGTKANLVTPRNGEPLIAAIQ 543

Query: 407  DFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFSV 463
            DFLT ++L+T KDTF+DR+    +   +  G D   R+ LP PAILKP+ LWTGKQ+FS+
Sbjct: 544  DFLTGAYLLTLKDTFFDRSKACQIVASILVGKDEKVRISLPHPAILKPMALWTGKQIFSM 603

Query: 464  LIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGK 523
            ++RP  +  V  NL  K K Y  K            E +C ND FV   NSEL+ G + K
Sbjct: 604  ILRPSKDCPVKANLRTKGKQYCGK-----------GEDLCYNDSFVVIHNSELMCGSMDK 652

Query: 524  ATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK 583
             TLG+G+K+ ++ +LLRD+G    +  M+RLA+L+  ++ N GFSIGI DV P   L   
Sbjct: 653  GTLGSGSKNNIFYILLRDWGQLEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGHGLLKA 712

Query: 584  KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLP 643
            K  L+ + Y+ C+  I+    GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L 
Sbjct: 713  KQDLLDDGYKKCDEYIEALQTGKLQQQPGCSAEETLEALILRELSVIRDRAGSACLRELD 772

Query: 644  WRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKG 703
              NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAKG
Sbjct: 773  KSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKG 832

Query: 704  FVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRN 763
            FVA+SFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR+
Sbjct: 833  FVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRS 892

Query: 764  AGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA--TCP--PAGQRYLSPQQVSE 819
            + G I+QF+YG DG+DPA MEGK  EPL F R+L  ++A  TCP  PA    LS  ++  
Sbjct: 893  SMGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVYTCPDEPA----LSQNKLVL 947

Query: 820  IVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTS 879
              +  +       C ++FL  ++KF     +++ K     +  G +D      +V ++  
Sbjct: 948  TSDAIMKRADFMCCRDSFLEEIKKFIRSMSERIKKT---RDKYGINDNGTSEPKVLYQLD 1004

Query: 880  GITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNIT 939
             IT  QLE F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT
Sbjct: 1005 RITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNIT 1064

Query: 940  QGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSR 999
             GVPRIKEIIN +K ISTPIITA+L+  D+ + AR+VKGRIEKTLLG++++ I+ V    
Sbjct: 1065 LGVPRIKEIINASKNISTPIITAQLDVEDDADFARLVKGRIEKTLLGEISEYIEEVFLPD 1124

Query: 1000 LASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP-PVDKS 1058
               I++ L +E I+   L +NA+ V+ SI  + K+++K   I V     + + P   +KS
Sbjct: 1125 DCFILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDIAVHGEAVVCVSPRENNKS 1183

Query: 1059 KIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
             +++ L SLK  LP V+V+GI  V R VI         + E   K KY+LLVEG  ++AV
Sbjct: 1184 SMYYVLQSLKEDLPKVVVQGIPEVARAVI--------HIDEQSGKNKYKLLVEGDNMRAV 1235

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            M   G++G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLLADLM+
Sbjct: 1236 MATHGVNGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMS 1295

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
            ++GE+LGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +
Sbjct: 1296 YKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNI 1355

Query: 1239 GTGILKIRQR 1248
            GTG+ K+  +
Sbjct: 1356 GTGLFKLLHK 1365


>gi|388857575|emb|CCF48724.1| probable RPO31-DNA-directed RNA polymerase III, 160 KD subunit
            [Ustilago hordei]
          Length = 1400

 Score = 1206 bits (3119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/1284 (49%), Positives = 855/1284 (66%), Gaps = 73/1284 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             R P +E L +T   K++    +T+A K + CP+CGY NG VKK    L I+H++ +  +
Sbjct: 128  FRKPNLENLDRTRAFKAV----NTIARKVLYCPKCGYTNGTVKKQ-GQLKIVHEKFRAKK 182

Query: 61   SLQEF----ASAITHTKESKAAV----NVATYILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
            +  E     AS  T+ K     +    N A   LNP+  L LFKR++D DCE+L L    
Sbjct: 183  TAAEHDEFRASFATNIKMGNGDISPHLNRAQEDLNPLKALDLFKRISDEDCELLGLRPEF 242

Query: 111  -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE+ I   I VPP+ IRPSV  DG+ +NE+D+T +L  II TN+ L+  LV+      
Sbjct: 243  GRPEEYIWQYICVPPVCIRPSVAQDGA-TNEDDVTIKLTEIIFTNSLLKLGLVKGGKGTT 301

Query: 170  S---LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVE 226
            +   +  WE LQ+ VA YINS++ GVP +    +P  GF QRLKGKQGRFRGNLSGKRV+
Sbjct: 302  TSQLVQQWEFLQLTVALYINSELPGVP-TQPGQKPSRGFCQRLKGKQGRFRGNLSGKRVD 360

Query: 227  YTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR-MI 285
            ++GRTVI PDPNLKI EVA+P R+A+ILTYPERV +HNIE+LRQ ++NG D +PGA  ++
Sbjct: 361  FSGRTVIGPDPNLKIDEVAVPQRVAKILTYPERVFEHNIEQLRQAVRNGTDVHPGANYLM 420

Query: 286  RYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIM 344
                G  R L +   R +LA +L+ G IV+RH+ DGD+VLFNRQPSLH++SIM HRA+I 
Sbjct: 421  DGKTGFKRFLKFPGMREELAQKLRVGDIVERHIRDGDIVLFNRQPSLHKLSIMSHRAKIR 480

Query: 345  PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAS 404
            PWRT R NE  CNPYNADFDGDEMNMHVPQTEEARTEA +LMGV++NL TP+NGE ++A+
Sbjct: 481  PWRTFRLNECACNPYNADFDGDEMNMHVPQTEEARTEATILMGVKHNLVTPRNGEPIIAA 540

Query: 405  TQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVL 464
             QDF+T+S+LI+++D F+DRA F+ +C Y  D   ++D+P PAI+KPV LWTGKQ+ S L
Sbjct: 541  IQDFITASYLISKRDRFFDRAQFAQVCSYFADADLQIDIPPPAIMKPVRLWTGKQVMSCL 600

Query: 465  IRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKA 524
            IRP+      +NL  + +T+     + +G      + M PNDG++   NSE++ G   K+
Sbjct: 601  IRPNRKSPHLINLEAQCRTFE----KPKGGHP---KDMSPNDGWLVIVNSEVMCGVFDKS 653

Query: 525  TLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKK 584
            T+G+G K+ ++ V+LRDYG  A    MNRLAK  ARW+ N GFS+GI+DV P   L   K
Sbjct: 654  TVGDGKKNSVFGVMLRDYGPDAAITAMNRLAKTCARWLANQGFSLGINDVIPGPNLRKNK 713

Query: 585  GKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW 644
               +   Y  C   I++   GKL+  PGCD  QTLE +I+ +L+ +R D G+ CM  L  
Sbjct: 714  DAKVEAAYAECLDLIEKAKHGKLENLPGCDQEQTLENMISGVLSGVRSDVGEICMTELSR 773

Query: 645  RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 704
             N+PL+M+  GSKGS IN++QMVACVGQQ + G R PNGF DRSLPHFP+K+K+P +KGF
Sbjct: 774  HNAPLVMAVSGSKGSKINVAQMVACVGQQIIAGSRVPNGFQDRSLPHFPKKSKDPPSKGF 833

Query: 705  VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
            V NSF+SGL+ TEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDLS  YD SVRN+
Sbjct: 834  VRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDLSVRNS 893

Query: 765  GGCIVQFLYGDDGMDPANMEGKSG--EPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
             G +VQF+YGDDG+DPA +EG +   EP    R  M +    P  G   + P ++ EIVE
Sbjct: 894  VGGVVQFIYGDDGLDPAELEGNAMPIEPFRLWRHCMAITHHIPGRG---MYPYEIMEIVE 950

Query: 823  KQL-AAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIG----------WDDKSQI- 870
            ++L +     +C++ + +S+ +F    ++   + ++  +  G          WD+ + + 
Sbjct: 951  RELKSPRFVNTCTQKYRDSVYEFL--SENVYKRAVEVRQAFGMYGAEERAEYWDEHTDLS 1008

Query: 871  ------LEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMT 924
                     + +  + I E  +  F+  C+ +Y   ++E G+A+GA+GAQSIGEPGTQMT
Sbjct: 1009 FGADRDAWAIVNNKTKIKEVAILEFLNQCYIKYMKAKIEPGSAVGAVGAQSIGEPGTQMT 1068

Query: 925  LKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTL 984
            LKTFHFAGVASMN+T GVPRIKEIIN AK I+TPII A+L    +E +AR+VKGRIEKT 
Sbjct: 1069 LKTFHFAGVASMNVTLGVPRIKEIINAAKSINTPIIEAKLVSEKSEQSARIVKGRIEKTY 1128

Query: 985  LGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL 1044
            LG +A  I+    ++   + + +DME IQ   L I  + +K +IV  PK+K+K++ + V+
Sbjct: 1129 LGDIASVIEEAWAAQYTYLGVHIDMEAIQKLQLEITLNDIKWAIVNAPKLKIKEERVMVI 1188

Query: 1045 DFR-KLEIFPP---VDK-SKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKE 1099
              + ++ I+ P   +DK S++++ L +LK  LP ++VKGI    R VI++          
Sbjct: 1189 PKKNRIRIYVPPEGIDKESEVYYNLKALKRTLPSIVVKGIPQATRAVISD---------- 1238

Query: 1100 NGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMK 1159
              EK   +LLVEG GL  VM  EG+ G +T +NH+ E+Q  LGIEAAR  +  EI  TM 
Sbjct: 1239 --EKGTRKLLVEGYGLLKVMTTEGVIGTQTHTNHVMEMQSVLGIEAARTSVYREIEHTMS 1296

Query: 1160 AHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGR 1219
            AHGMSID RH+MLLAD MT++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+A++ G+
Sbjct: 1297 AHGMSIDPRHVMLLADTMTYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAALFGK 1356

Query: 1220 DDRIEGVSECIIMGIP-MPLGTGI 1242
             D + GVSE IIMG P   +GTG+
Sbjct: 1357 KDEVLGVSESIIMGNPAQTVGTGM 1380


>gi|297301053|ref|XP_002805710.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Macaca
            mulatta]
          Length = 1405

 Score = 1204 bits (3114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 649/1290 (50%), Positives = 858/1290 (66%), Gaps = 67/1290 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKNICHHCGSFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ +QNGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCGKG-----------EDLCANDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSG---------CM------NRLAKLSARWIGNHGF 567
            K TLG+G+K+ ++ +LLRD+G +  +G         C        R+ + S     N GF
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEATGLDYKTSLMGCFQDTCGSTRVIQFSRITQSNRGF 711

Query: 568  SIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDIL 627
            SIGI DV P + L   K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L
Sbjct: 712  SIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKEL 771

Query: 628  NRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDR 687
            + IR+ AG AC+  L   NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +R
Sbjct: 772  SVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENR 831

Query: 688  SLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLI 747
            SLPHF + +K PAAKGFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+
Sbjct: 832  SLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLV 891

Query: 748  KALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPA 807
            K+LEDL  QYD +VR++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P  
Sbjct: 892  KSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCP 950

Query: 808  GQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDK 867
             +  LS  ++    E  +       C ++FL  ++KF +G  +K+ K     +  G +D 
Sbjct: 951  SEPALSKNELILTTESIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDN 1007

Query: 868  SQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKT 927
                  V ++   IT  Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKT
Sbjct: 1008 GTTEPRVLYQLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKT 1067

Query: 928  FHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQ 987
            FHFAGVASMNIT GVPRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG+
Sbjct: 1068 FHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGE 1127

Query: 988  VAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR 1047
            +++ I+ V       I++ L +E I+   L +NA+ V+ SI  T K+++K   + V    
Sbjct: 1128 ISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEA 1186

Query: 1048 KLEIFPPVD-KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKY 1106
             + + P  + KS +++ L  LK  LP V+V+GI  V R VI         + E   K+KY
Sbjct: 1187 VVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKY 1238

Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
            +LLVEG  L+AVM   G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID
Sbjct: 1239 KLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSID 1298

Query: 1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
            +RH+MLL+DLMT++GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GV
Sbjct: 1299 RRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGV 1358

Query: 1227 SECIIMGIPMPLGTGILKIRQ---RDAVPP 1253
            SECIIMGIPM +GTG+ K+     RD  PP
Sbjct: 1359 SECIIMGIPMNIGTGLFKLLHKADRDPNPP 1388


>gi|348508629|ref|XP_003441856.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
            [Oreochromis niloticus]
          Length = 1390

 Score = 1202 bits (3110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 644/1290 (49%), Positives = 866/1290 (67%), Gaps = 64/1290 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  C   NG VKK   +L IIH++ K   
Sbjct: 129  LKRPNLAYLQKRGLKKKISDKCR----KRTVCLNCSAFNGPVKKC-GLLKIIHEKYKTTK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V++ LQ F  AI H K  +  +  A   LNP+ VL LF+R+ + D  +L ++  
Sbjct: 184  KVVDAFVSDFLQSFDIAIEHNKLVEPLLTRAQENLNPLVVLNLFRRIPEEDIPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LIIT + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPADLIITRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILTYPERV+  N+E +R+ ++NGPD +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPDVHPGANFIQN 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A EL+ G +V+RHL DGD+VLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQIKRFLKYGN-REKIAQELRFGDLVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALILMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DR+    +   +  G D   R+ LP PAI+KP+ LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRSKACQIVASILVGKDERVRISLPRPAIIKPMALWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            ++++P     V  NL  K K Y  K            E +C ND FV   NSEL+ G + 
Sbjct: 603  LILKPSKECPVNANLRTKGKQYCGK-----------GEDLCHNDSFVVIHNSELMCGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G    +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQLEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K  L+ + Y+ C+  I+  + GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKQDLLDDGYKKCDEYIEALDTGKLQQQPGCTAEETLEALILKELSVIRDRAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVA+SFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA--TCP--PAGQRYLSPQQVS 818
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  ++A  TCP  PA    LS  ++ 
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVYTCPDEPA----LSQNELV 946

Query: 819  EIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKT 878
               +  +       C ++FL  ++KF +   +++ K     +  G +D      +V ++ 
Sbjct: 947  LTADAIMKRADFLCCRDSFLEEIKKFIKSVSERIKKT---RDKYGINDNGTSEPKVLYQL 1003

Query: 879  SGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNI 938
              +T  QLE F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNI
Sbjct: 1004 DRVTPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063

Query: 939  TQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            T GVPRIKEIIN +K ISTPIITA L+  D+ + AR+VKGRIEKTLLG++++ I+ V   
Sbjct: 1064 TLGVPRIKEIINASKNISTPIITAHLDVEDDADFARLVKGRIEKTLLGEISEYIEEVFLP 1123

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-K 1057
                I++ L +E I+   L +NA+ V+ SI  + K+++K   I V     + + P  + K
Sbjct: 1124 DDCFILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPADIAVHGEAVVCVSPRENSK 1182

Query: 1058 SKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQA 1117
            S +++ L SLK  LP V+V+GI  V R VI         + E   K KY+LLVEG  L+A
Sbjct: 1183 SSMYYVLQSLKGELPKVVVQGIPEVARAVI--------HIDEQSSKSKYKLLVEGDNLRA 1234

Query: 1118 VMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLM 1177
            VM   G++G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLLADLM
Sbjct: 1235 VMATHGVNGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLM 1294

Query: 1178 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP 1237
            +++GE+LGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM 
Sbjct: 1295 SYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMN 1354

Query: 1238 LGTGILKIRQ---RDAVP---PMLKYGAPD 1261
            +GTG+ K+     RD  P   P+L +  PD
Sbjct: 1355 IGTGLFKLLHKADRDPSPVKRPLL-FDNPD 1383


>gi|393215308|gb|EJD00799.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Fomitiporia mediterranea MF3/22]
          Length = 1403

 Score = 1201 bits (3107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/1273 (49%), Positives = 843/1273 (66%), Gaps = 63/1273 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             R P +E + +T L+KSI    ++ A K V CP C   NG VKKA A+  I+HD+ +  +
Sbjct: 126  FRRPHLENIHRTSLVKSI----NSSARKVVYCPYCSSTNGTVKKAGAI-KIVHDKFRAKK 180

Query: 61   SLQE-------FASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
            +  E       FA AI   KE    +N A    LNP+ VL LF+R++D DCE+L L+   
Sbjct: 181  TADELERFKRSFAKAIEGQKEIGMYINKAVQEDLNPLKVLDLFRRISDEDCELLGLNPSH 240

Query: 111  -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE+ I   I+VPP+ IRPSV  DG+ SNE+D+T +L  I+ T+A ++Q L +     +
Sbjct: 241  GRPEEYIWQYISVPPVCIRPSVAQDGA-SNEDDLTVKLTEIVFTSALIKQGLAKGAPTQQ 299

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  W+ LQV VA YINS+  G+P  M   +P+ GF QRLKGKQGRFRGNLSGKRV+++G
Sbjct: 300  FMEQWDFLQVSVAIYINSETPGIPIQM-AQKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 358

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY-P 288
            RTVISPDPNL+I EVAIP R+A+ILTYPERV+ HN+  LR  ++NG D +PGA  +    
Sbjct: 359  RTVISPDPNLRIDEVAIPERVAKILTYPERVTAHNVNVLRYAVRNGCDVHPGANYVTAGS 418

Query: 289  DGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 348
             G  + L    RN +A  L+ G +V+RHL DGDVVLFNRQPSLH++SIMCHR ++ PWR+
Sbjct: 419  SGFKKFLKFGNRNAIADGLRIGDVVERHLIDGDVVLFNRQPSLHKLSIMCHRVKVRPWRS 478

Query: 349  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDF 408
             R NE VC PY ADFDGDEMN+HVPQTEEARTEAL LM ++ NL TP+NGE ++++ QDF
Sbjct: 479  FRLNECVCGPYGADFDGDEMNIHVPQTEEARTEALTLMSIKLNLVTPRNGEPVISAIQDF 538

Query: 409  LTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
            +T+SFL++++D F+DR  F+ +C Y  D   ++D+P P ILKP  LWTGKQ+F+VL+RP+
Sbjct: 539  ITASFLLSQRDRFFDRQQFAQICSYFCDADLQIDIPPPTILKPQRLWTGKQIFNVLMRPN 598

Query: 469  ANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET---MCPNDGFVYFRNSELISGQLGKAT 525
                V VN+  K     NK  + +     R+     + PNDG++   NSE++ G + KAT
Sbjct: 599  KRSNVLVNVESK----CNKEQKPDPANYPRMNPAPDLSPNDGYLVIVNSEIMCGVMDKAT 654

Query: 526  LGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKG 585
            +G+G K  ++ V+LRDYG    +  MNR+AKL ARW+ N GFS+GI+DV P   LS  K 
Sbjct: 655  VGSGKKRSIFGVILRDYGPDEAAAAMNRIAKLCARWLSNIGFSLGINDVIPGPTLSANKD 714

Query: 586  KLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR 645
            KLI   YE C   I +  +GKL+ KPGC+  QTLEA+I+ +L+++R+  G  CM  L   
Sbjct: 715  KLIETAYETCIDLIAQAKKGKLENKPGCNQEQTLEAMISGVLSKVRDTVGDTCMKELSRH 774

Query: 646  NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFV 705
            N+PLIM+ CGSKGS IN+ QMVACVGQQ + G+R P+GF DRSLPHFP+K+KEP +KGFV
Sbjct: 775  NAPLIMATCGSKGSAINVCQMVACVGQQIIAGKRVPDGFQDRSLPHFPKKSKEPPSKGFV 834

Query: 706  ANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAG 765
             NSFY+GL  TEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDL+  YD SVRN+ 
Sbjct: 835  RNSFYTGLLPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTMYDMSVRNSE 894

Query: 766  GCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQL 825
            G +VQF YGDDG+DP  +EG + +P+  +R     +A     G R L P ++ ++V+++L
Sbjct: 895  GGVVQFQYGDDGLDPGCLEGDA-QPVELNRSWSHARAISSRRG-RGLLPYEIIDLVDEEL 952

Query: 826  AAYGKES-CSEAFLNSLRKFF--------------EGQQDKLDKKIKFVEDIGWDDKSQI 870
            ++      CS+ ++  LR+F                G  D L K     ED  WD  + +
Sbjct: 953  SSKKFTGVCSDTYIAVLRQFIYDNAVKPLAEQRKEHGMYDALQK-----ED-EWDADTDL 1006

Query: 871  LEEVTHKTSGITEKQLEV-------FIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQM 923
                T     I   Q++V       F+  C  +Y   ++E G+ +GA+GAQSIGEPGTQM
Sbjct: 1007 SMGATDAEFKIISNQIKVTHTHLLTFLTLCLKKYLKAKIEPGSTVGAVGAQSIGEPGTQM 1066

Query: 924  TLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKT 983
            TLKTFHFAGVASMN+T GVPRIKEIIN AK ISTPII+  L  N +E +AR+VKGR+EKT
Sbjct: 1067 TLKTFHFAGVASMNVTLGVPRIKEIINAAKTISTPIISCRLVNNMSEASARIVKGRLEKT 1126

Query: 984  LLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKV 1043
            LLG VA  ++         I I +DM+ +Q   L +  D +K +IV   K+K+KQ+ I V
Sbjct: 1127 LLGDVASVLEEAWAPEYTYIGIIVDMDAVQKLQLELTLDDIKWAIVAAKKLKVKQESIIV 1186

Query: 1044 LDFR-KLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGE 1102
            +  + +L I+  ++     + L  L+  LP V+VKGI+TV+R +I  K+K+  +    G+
Sbjct: 1187 IPKKNRLRIY--INGEDKFYRLRELRRALPSVVVKGIQTVQRAIINIKDKDDHR----GK 1240

Query: 1103 KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHG 1162
            K    +LVEG GLQ VM  +GI G    +NHI E    LGIEAAR  II+EI   MK HG
Sbjct: 1241 KGDKEMLVEGYGLQKVMITDGIVGEYATTNHIIETAAVLGIEAARANIINEIQFIMKEHG 1300

Query: 1163 MSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDR 1222
            MSID RH+MLL D+MT++GE+LGITRFG+ KM  SVLMLASFEKT DHLF+AS  G+ D 
Sbjct: 1301 MSIDPRHVMLLGDVMTYKGEILGITRFGVAKMKDSVLMLASFEKTTDHLFDASAYGKTDS 1360

Query: 1223 IEGVSECIIMGIP 1235
            I GVSE IIMG P
Sbjct: 1361 ILGVSESIIMGNP 1373


>gi|71024147|ref|XP_762303.1| hypothetical protein UM06156.1 [Ustilago maydis 521]
 gi|46101808|gb|EAK87041.1| hypothetical protein UM06156.1 [Ustilago maydis 521]
          Length = 1400

 Score = 1201 bits (3106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/1279 (49%), Positives = 852/1279 (66%), Gaps = 69/1279 (5%)

Query: 4    PKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQ 63
            P +E L +T   K++    +T+A K + CP+CGY NG VKK    L I+H++ +  ++  
Sbjct: 131  PNLENLDRTRTFKAV----NTIARKVLYCPKCGYTNGTVKKQ-GQLKIVHEKFRAKKTAA 185

Query: 64   EF----ASAITHTKESKAAV----NVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RP 112
            E     AS  T+ K     +    N A   LNP+  L LFKR++D DCE+L L     RP
Sbjct: 186  EHDEFKASFATNIKMGNGDISPHLNKAQEDLNPLKALDLFKRISDEDCELLGLRPEFGRP 245

Query: 113  EKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS-- 170
            E+ I   I VPP+ IRPSV  DG+ +NE+D+T +L  II TN+ L+  LV+      +  
Sbjct: 246  EEYIWQYICVPPVCIRPSVAQDGA-TNEDDVTIKLTEIIFTNSLLKLGLVKGGKGTTTSQ 304

Query: 171  -LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  WE LQ+ VA YINS++ GVP +    +P  GF QRLKGKQGRFRGNLSGKRV+++G
Sbjct: 305  LVQQWEFLQLTVALYINSELPGVP-TQPGQKPSRGFCQRLKGKQGRFRGNLSGKRVDFSG 363

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYP 288
            RTVI PDPNLKI EVA+P R+A+ILTYPERV  HNIE+LRQ ++NG D +PGA  ++   
Sbjct: 364  RTVIGPDPNLKIDEVAVPQRVAKILTYPERVFQHNIEQLRQAVRNGTDIHPGANYLMDGK 423

Query: 289  DGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
             G  R L +   R +LA +L+ G +V+RH+ DGD+VLFNRQPSLH++SIM HRA+I PWR
Sbjct: 424  TGFKRFLKFPGMREELAEKLRVGDVVERHIRDGDIVLFNRQPSLHKLSIMSHRAKIRPWR 483

Query: 348  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQD 407
            T R NE  CNPYNADFDGDEMNMHVPQTEEARTEA +LMGV++NL TP+NGE ++A+ QD
Sbjct: 484  TFRLNECACNPYNADFDGDEMNMHVPQTEEARTEATVLMGVKHNLVTPRNGEPIIAAIQD 543

Query: 408  FLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRP 467
            F+T+S+LI+++D F+DRA FS +C Y  D    +D+P PAI+KPV LWTGKQ+ S LIRP
Sbjct: 544  FITASYLISKRDRFFDRAQFSQICSYFSDADLHIDIPPPAIMKPVRLWTGKQVMSCLIRP 603

Query: 468  HANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLG 527
            +      VNL  + +T+      T G  +     M PNDG++   NS+++ G   K+T+G
Sbjct: 604  NRKSPHLVNLEAQCRTFEKP---TGGHPK----DMSPNDGWLVIVNSQVMCGVFDKSTVG 656

Query: 528  NGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKL 587
            +G K+ ++ V+LRDYG  A    MNRLAK  ARW+ N GFS+GI+DV P  +L   K   
Sbjct: 657  DGKKNSVFGVMLRDYGPDAAITAMNRLAKTCARWLANQGFSLGINDVIPGPKLRMNKDAK 716

Query: 588  ISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNS 647
            +   Y  C   I++   GKL+  PGCD  QTLE +I+ +L+ +R D G+ CM  L   N+
Sbjct: 717  VEAAYAECLDLIEKAKYGKLENLPGCDQEQTLENMISGVLSGVRSDVGEICMTELSRHNA 776

Query: 648  PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVAN 707
            PL+M+ CGSKGS IN++QMVACVGQQ + G R PNGF DRSLPHF +K+K+P +KGFV N
Sbjct: 777  PLVMAVCGSKGSKINVAQMVACVGQQIIAGSRVPNGFQDRSLPHFAKKSKDPPSKGFVRN 836

Query: 708  SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
            SF+SGL+ TEF FH + GREGLVDTAVKTA+TGYM RRL+KALEDLS  YD SVRN+ G 
Sbjct: 837  SFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDLSVRNSVGG 896

Query: 768  IVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAA 827
            +VQF+YGDDG+DPA +EG +  P+   RL     A       R L P ++ E+V+++L++
Sbjct: 897  VVQFIYGDDGLDPAELEG-NAMPIEPFRLWRHCLAITHHVAGRGLLPYEIMEVVKRELSS 955

Query: 828  -YGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIG----------WDDKSQI------ 870
                ++C++ + +S+ +F    ++   + IK  E  G          WD+++ +      
Sbjct: 956  DRFVKTCTQKYRDSVYEFL--YENVYQRAIKMREAFGMYGADSREEHWDEQTDLSLGADR 1013

Query: 871  -LEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFH 929
                + +  + I E  +  F++ C+ +Y   ++E G+A+GA+GAQSIGEPGTQMTLKTFH
Sbjct: 1014 AQWAIVNNKTKIKEVAVLAFLEQCYIKYMKAKIEPGSAVGAVGAQSIGEPGTQMTLKTFH 1073

Query: 930  FAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVA 989
            FAGVASMN+T GVPRIKEIIN AK I+TPII A+L    +E AAR+VKGRIEKT LG +A
Sbjct: 1074 FAGVASMNVTLGVPRIKEIINAAKVINTPIIEAKLVSEKSERAARIVKGRIEKTYLGDIA 1133

Query: 990  KSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR-K 1048
              I+    ++   + + +DME IQ   L I  + +K +IV  PK+K+K++ + V+  + +
Sbjct: 1134 SVIEEAWAAQYTYLGVHIDMEAIQKLQLEITLNDIKWAIVNAPKLKIKEERVMVVPKKNR 1193

Query: 1049 LEIFPPVD----KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKK 1104
            + I+ P +    +  +++ L +LK  LP ++VKGI    R VI++            EK 
Sbjct: 1194 IRIYVPPEAPDKEGDVYYNLKALKRALPSIVVKGIPQATRAVISD------------EKG 1241

Query: 1105 KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMS 1164
              +LLVEG GL  VM  EG+ G +T +NH+ E+Q  LGIEAAR  +  EI  TM AHGMS
Sbjct: 1242 TRKLLVEGYGLLKVMTTEGVIGTQTHTNHVMEMQAVLGIEAARTSVYREIEHTMSAHGMS 1301

Query: 1165 IDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIE 1224
            ID RH+MLLAD MT++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+A++ G+ D + 
Sbjct: 1302 IDPRHIMLLADTMTYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAALFGKKDEVL 1361

Query: 1225 GVSECIIMGIP-MPLGTGI 1242
            GVSE IIMG P   +GTG+
Sbjct: 1362 GVSESIIMGNPAQTVGTGM 1380


>gi|395501590|ref|XP_003755175.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Sarcophilus
            harrisii]
          Length = 1390

 Score = 1201 bits (3106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1244 (51%), Positives = 847/1244 (68%), Gaps = 48/1244 (3%)

Query: 32   CPRCGYINGMVKKAVAVLGIIHDRSK---------VTESLQEFASAITHTKESKAAVNVA 82
            C  CG  NG VKK   +L IIH++ K         V+  LQ F +AI + KE +  +  A
Sbjct: 156  CHHCGAFNGTVKKC-GLLKIIHEKYKTNKKVVDPVVSNFLQSFETAIEYNKEVEPLLGRA 214

Query: 83   TYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMD-GSQS 138
               LNP+ VL LFKR+   D  +L ++    +P  LI+T + VPP+ IRPSV+ D  S +
Sbjct: 215  QENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGT 274

Query: 139  NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQV 198
            NE+D+T +L  II  N  +++  +        +  W+ LQ++ A YINS++ G+P +M  
Sbjct: 275  NEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAP 334

Query: 199  ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
             +   GFVQRLKGKQGRFRGNLSGKRV+++GRTVISPDPNL+I EVA+P+ +A+ILT+PE
Sbjct: 335  KKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPE 394

Query: 259  RVSDHNIEKLRQCIQNGPDKYPGARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
            +V+  NI  +R+ ++NGP+ +PGA  I  R+      + YG  R ++A ELK G IV+RH
Sbjct: 395  KVNKANINFMRKLVRNGPEVHPGANFIQQRHMQMKRFLKYGN-REKMAQELKYGDIVERH 453

Query: 317  LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
            L DGDVVLFNRQPSLH++SIM H AR+ P RT RFNE VC PYNADFDGDEMN+H+PQTE
Sbjct: 454  LIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTE 513

Query: 377  EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
            EA+ EAL+LMG + NL TP+NGE L+A+ QDFLT ++L+T KDTF+DRA    +   +  
Sbjct: 514  EAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILV 573

Query: 437  GMD---RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
            G D   +V LP PAILKPV LWTGKQ+FS++++P     V  NL  K K Y         
Sbjct: 574  GKDEKIKVRLPPPAILKPVTLWTGKQVFSLILQPSDENPVRANLRTKGKQYCG------- 626

Query: 494  DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
                R E +C ND +V  +NSEL+SG + K TLG+G+K+ ++ +LLRD+G    +  M+R
Sbjct: 627  ----RGEDLCVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQIEAADAMSR 682

Query: 554  LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
            LA+L+  ++ N GFSIGI DV P + L   K +L++  Y+ C+  I+  N GKLQ +PGC
Sbjct: 683  LARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLTAGYKKCDEYIEALNTGKLQQQPGC 742

Query: 614  DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
             A +TLEA+I   L+ IR+ AG AC+  L   NSPL M+ CGSKGS INISQM+ACVGQQ
Sbjct: 743  TAEETLEALILKELSVIRDHAGNACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQ 802

Query: 674  SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
            ++ G R P+GF +RSLPHF + +K PAAKGFVANSFYSGL+ TEFFFHTM GREGLVDTA
Sbjct: 803  AISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTA 862

Query: 734  VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
            VKTA+TGYM RRL+K+LEDL  QYD +VR++ G I+QF+YG DG+DPA MEGK  EPL F
Sbjct: 863  VKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEF 921

Query: 794  DRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLD 853
             R+L  +KA  P   +  LS  ++    E  +       C ++FL  ++KF +   +K+ 
Sbjct: 922  KRVLDNIKAVFPCQSEPALSKNELVLTTESIMKRNEFLCCQDSFLQEIKKFIKVVSEKIK 981

Query: 854  KKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGA 913
            K     +  G +D       V ++   IT  Q+E F++TC  +Y   ++E G+A+GA+ A
Sbjct: 982  KT---RDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCA 1038

Query: 914  QSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAA 973
            QSIGEPGTQMTLKTFHFAGVASMNIT GVPRIKEIIN +K ISTPIITA+L+ +++ + A
Sbjct: 1039 QSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKDNDADYA 1098

Query: 974  RVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPK 1033
            R+VKGRIEKTLLG++++ I+ V       I++ L +E I+   L +NA+ V+ SI  T K
Sbjct: 1099 RLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-TSK 1157

Query: 1034 IKLKQQHIKVLDFRKLEIFPPVD-KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEK 1092
            +++K   + V     L + P  + KS +++ L  LK  LP V+V+GI  V R VI     
Sbjct: 1158 LRVKPGDVAVHGEAVLCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVARAVI----- 1212

Query: 1093 EKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIID 1152
                + E   K+KY+LLVEG  L+AVM   G+ G KT SN+ +EV++TLGIEAAR  II+
Sbjct: 1213 ---HIDEQSGKEKYKLLVEGDNLRAVMATHGVQGTKTTSNNTYEVEKTLGIEAARSTIIN 1269

Query: 1153 EINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLF 1212
            EI  TM  HGMSID+RH+MLL+DLMT++GEVLGITRFG+ KM +SVLMLASFEKTADHLF
Sbjct: 1270 EIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLF 1329

Query: 1213 NASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQ---RDAVPP 1253
            +A+  G+ D + GVSECIIMGIPM +GTG+ K+     RD  PP
Sbjct: 1330 DAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADRDPNPP 1373


>gi|410895601|ref|XP_003961288.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
            [Takifugu rubripes]
          Length = 1390

 Score = 1198 bits (3099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 635/1272 (49%), Positives = 853/1272 (67%), Gaps = 49/1272 (3%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I +KC     K   C  C   NG VKK   +L IIH++ K   
Sbjct: 129  LKRPTLTYLQKRGLKKKISEKCR----KRTVCLNCSAFNGPVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSER 111
                  V++ LQ F  AI H K  +  ++ A   LNP+ V  LFKR++  D  +L ++  
Sbjct: 184  KVVDPFVSDFLQSFDIAIEHNKVLEPLLSRAQENLNPLVVRNLFKRISREDIPLLLMNPE 243

Query: 112  ---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGTPADLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILTYPERV+  N+E +R+ ++NGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGANFIQN 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A EL+ G +V+RHL DGD+VLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RFTQIKRFLKYGN-REKIAQELRLGDVVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DR+    +   +  G D   R+ LP PAI+KP+ LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRSKSCQIVASILVGKDEKVRISLPRPAIMKPMALWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V+++P     V  NL  K K Y  K            E +C ND FV   NSEL+ G + 
Sbjct: 603  VILKPSKECPVNANLRTKGKQYCGK-----------GEDLCHNDSFVVIHNSELMCGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G    +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQLEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGQSLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K  L+ + Y  C+  I     GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKHDLLDDGYMKCDEYIDALQTGKLQQQPGCSAEETLEALILRELSVIRDRAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  ++A    + +  LS  ++    +
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVYTCSDEPALSQNELVLTAD 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
                      C ++FL  ++KF +G  +++ K     +  G +D      +V ++   IT
Sbjct: 951  AITKRADFLCCRDSFLEEIKKFVKGFSERIKKT---RDKYGINDNGTSEPKVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              QLE F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQLERFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA L+  D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKNISTPIITAHLDVEDDADFARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  + K+++K   I V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDIAVHGEAVVCVSPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L SLK  LP V+V+GI  V R VI         + E   + KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQSLKEDLPKVVVQGIPEVARAVI--------HIDEQSGRNKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G++G +T SN+ FEV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLLADLM+++G
Sbjct: 1239 HGVNGSRTTSNNTFEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKG 1298

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            E+LGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358

Query: 1242 ILKIRQRDAVPP 1253
            + K+  +    P
Sbjct: 1359 LFKLLHKAEKEP 1370


>gi|344274310|ref|XP_003408960.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC1-like [Loxodonta africana]
          Length = 1392

 Score = 1197 bits (3098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 645/1277 (50%), Positives = 857/1277 (67%), Gaps = 54/1277 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C +CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKTICHQCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KIVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ +QNGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANIHFLRKLVQNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCGK-----------GEDLCVNDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLT 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  +++  +E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCPSEPALSRNELTLTME 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMQKSEFRCCQDSFLQEIKKFVKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQA-VMG 1120
            + L  LK  LP V+V+ I  V R VI         + E   K+KY+LLVEG      VM 
Sbjct: 1187 YVLQLLKEDLPKVVVQVIPEVSRAVI--------HIDEQSGKEKYKLLVEGDKPGGPVMA 1238

Query: 1121 AEGIDGCKTKSNHI-FEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTF 1179
              G+ G +        EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT+
Sbjct: 1239 TTGVKGNRDHPPKTPLEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTY 1298

Query: 1180 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLG 1239
            +GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +G
Sbjct: 1299 KGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIG 1358

Query: 1240 TGILKIRQ---RDAVPP 1253
            TG+ K+     RD  PP
Sbjct: 1359 TGLFKLLHKADRDPNPP 1375


>gi|410044035|ref|XP_507865.4| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Pan
            troglodytes]
          Length = 1380

 Score = 1197 bits (3097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/1236 (51%), Positives = 841/1236 (68%), Gaps = 48/1236 (3%)

Query: 40   GMVKKAVAVLGIIHDRSK---------VTESLQEFASAITHTKESKAAVNVATYILNPVN 90
            G VKK   +L IIH++ K         V+  LQ F +AI H KE +  +  A    NP+ 
Sbjct: 154  GTVKKC-GLLKIIHEKYKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQVYWNPLV 212

Query: 91   VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITER 146
            VL L   +   D  +L ++    +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +
Sbjct: 213  VLNLLNEIPAEDVPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMK 272

Query: 147  LKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFV 206
            L  II  N  +++  +        +  W+ LQ++ A YINS++ G+P +M   +   GFV
Sbjct: 273  LTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFV 332

Query: 207  QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            QRLKGKQGRFRGNLSGKRV+++GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI 
Sbjct: 333  QRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANIN 392

Query: 267  KLRQCIQNGPDKYPGARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVL 324
             LR+ +QNGP+ +PGA  I  R+      + YG  R ++A ELK G IV+RHL DGDVVL
Sbjct: 393  FLRKLVQNGPEVHPGANFIQQRHTQMKRFLKYGN-REKIAQELKYGDIVERHLIDGDVVL 451

Query: 325  FNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALL 384
            FNRQPSLH++SIM H AR+ P RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+
Sbjct: 452  FNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALV 511

Query: 385  LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RV 441
            LMG + NL TP+NGE L+A+ QDFLT ++L+T KDTF+DRA    +   +  G D   +V
Sbjct: 512  LMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKV 571

Query: 442  DLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET 501
             LP P ILKPV LWTGKQ+FSV++RP  +  V  NL  K K Y  K            E 
Sbjct: 572  RLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKG-----------ED 620

Query: 502  MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARW 561
            +C ND +V  +NSEL+SG + K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  +
Sbjct: 621  LCANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVY 680

Query: 562  IGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEA 621
            + N GFSIGI DV P + L   K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA
Sbjct: 681  LSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEA 740

Query: 622  VITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
            +I   L+ IR+ AG AC+  L   NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P
Sbjct: 741  LILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVP 800

Query: 682  NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
            +GF +RSLPHF + +K PAAKGFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY
Sbjct: 801  DGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGY 860

Query: 742  MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVK 801
            M RRL+K+LEDL  QYD +VR++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +K
Sbjct: 861  MQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIK 919

Query: 802  ATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVED 861
            A  P   +  LS  ++    E  +       C ++FL  ++KF +G  +K+ K     + 
Sbjct: 920  AVFPCPSEPALSKNELILTTESIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDK 976

Query: 862  IGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGT 921
             G +D       V ++   IT  Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGT
Sbjct: 977  YGINDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGT 1036

Query: 922  QMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIE 981
            QMTLKTFHFAGVASMNIT GVPRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIE
Sbjct: 1037 QMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIE 1096

Query: 982  KTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHI 1041
            KTLLG++++ I+ V       I++ L +E I+   L +NA+ V+ SI  T K+++K   +
Sbjct: 1097 KTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDV 1155

Query: 1042 KVLDFRKLEIFPPVD-KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKEN 1100
             V     + + P  + KS +++ L  LK  LP V+V+GI  V R VI         + E 
Sbjct: 1156 AVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQ 1207

Query: 1101 GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKA 1160
              K+KY+LLVEG  L+AVM   G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  
Sbjct: 1208 SGKEKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVN 1267

Query: 1161 HGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRD 1220
            HGMSID+RH+MLL+DLMT++GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ 
Sbjct: 1268 HGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQK 1327

Query: 1221 DRIEGVSECIIMGIPMPLGTGILKIRQ---RDAVPP 1253
            D + GVSECIIMGIPM +GTG+ K+     RD  PP
Sbjct: 1328 DSVCGVSECIIMGIPMNIGTGLFKLLHKADRDPNPP 1363


>gi|219121691|ref|XP_002181195.1| rna polymerase C 157 kDa [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407181|gb|EEC47118.1| rna polymerase C 157 kDa [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1281

 Score = 1197 bits (3097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/1260 (49%), Positives = 838/1260 (66%), Gaps = 90/1260 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKK--AVAVLGIIHDRSKV 58
            MR+PK +AL K  L K +         K   CP CG  NG VKK   V  L I+H+R K 
Sbjct: 85   MRSPKTDALSKAALFKKV----VEKCKKVRVCPHCGGHNGTVKKITGVPTLKIVHERYKG 140

Query: 59   TESLQEFASAITHTKES-KAAVNVATYI---------LNPVNVLFLFKRMTDTDCEVLYL 108
              +  E    I + + S K   +V T I         L P   L +F  ++D DCEVL++
Sbjct: 141  RNAEDELDELIANLEVSLKMNKDVGTAISGSSLPYEDLLPTRALEIFTHISDDDCEVLWI 200

Query: 109  SE---RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEA 164
                 RPE LI+ +I VPP+ IRPSV MD G  SNE+D+T +L+ II  N +L+  L++ 
Sbjct: 201  DPLIGRPETLILQSILVPPVPIRPSVAMDVGGGSNEDDLTVKLQEIIDVNVALELALMKG 260

Query: 165  NSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKR 224
                  +  W+ LQV+VAQYIN ++ G+   +  ++P+ G  QRLKGKQGRFRGNLSGKR
Sbjct: 261  PQTRTIMEEWDFLQVQVAQYINGEMPGLQRPIG-SKPMRGLCQRLKGKQGRFRGNLSGKR 319

Query: 225  VEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARM 284
            V+++ RTVISPDPNL++ +V +P R+A+ +TYPERVS +NIEKLRQ ++NGPD +PGA +
Sbjct: 320  VDFSARTVISPDPNLRVDQVGVPERVAKTMTYPERVSRYNIEKLRQRVRNGPDVHPGANL 379

Query: 285  IRYPDGT-ARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARI 343
            IR  DG+  + L    R  +A  L+ G +V+RH+ED DVVLFNRQPSLH++SIM HRA++
Sbjct: 380  IRMKDGSFVKSLSFGDRELVAKNLRYGDVVERHMEDDDVVLFNRQPSLHKVSIMAHRAKV 439

Query: 344  MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVA 403
            M W+T RFN  VC PYNADFDGDEMNMH+PQTEEARTEA LLMGV++NL TP+NGE LVA
Sbjct: 440  MEWKTFRFNTCVCAPYNADFDGDEMNMHLPQTEEARTEASLLMGVKHNLTTPRNGEPLVA 499

Query: 404  STQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSV 463
            ++QDFL++S+++T++D F+ R  F  +  Y  D  + +D+P P IL+PVELWTGKQ+F +
Sbjct: 500  ASQDFLSASYMLTQRDRFFTREQFCQLVSYYSDASEDIDIPFPTILRPVELWTGKQVFGM 559

Query: 464  LIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGK 523
            ++RP+    V V+   KEK Y+              +  C NDG+V FRNSEL+SG + K
Sbjct: 560  MLRPNRKSSVLVSFENKEKNYTTN------------KYFCKNDGWVAFRNSELVSGNIAK 607

Query: 524  ATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH-GFSIGIDDVQPKKELSD 582
             ++G+G+K GL  +LLRD G H  + CM+R AK  +R++G H G SIGI DV P   L D
Sbjct: 608  KSIGDGSKSGLLYILLRDCGVHEAASCMDRWAKFCSRFMGGHRGLSIGISDVTPSARLRD 667

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K  ++SE Y+   + I    +G+L+L+PGCD  Q+LE ++  IL R+RE AG+  M +L
Sbjct: 668  IKHGILSEGYKKERL-ITPMKQGRLELRPGCDLLQSLEEILNGILGRLRESAGQEAMKAL 726

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
            PW N+P IM++CGSKGSP+NISQM++CVGQQ+VGG R  +GF++R LPHF   +  P+AK
Sbjct: 727  PWTNTPRIMAECGSKGSPLNISQMISCVGQQAVGGMRIQDGFVNRCLPHFEYHSLIPSAK 786

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFY+GL+ATEFFFH MGGREGLVDTAVKTA+TGYM+RRL+KALEDLS+QYD+SVR
Sbjct: 787  GFVANSFYTGLTATEFFFHAMGGREGLVDTAVKTAETGYMARRLMKALEDLSLQYDSSVR 846

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            N+   +VQF YGDDG++P NM   +  P++F+RL + +  T P   +  LS   +S  VE
Sbjct: 847  NSENTVVQFTYGDDGLNP-NMMENNDRPVDFERLRLHISQTTPCPTEDCLSAAALSTTVE 905

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
            K+LA    E   +A L + R F +  +D       F   +  +  S+           +T
Sbjct: 906  KKLA----EPRFQALLPTGRVFMQEIRD-------FFNSLAENQNSR-----------MT 943

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
            E QLE+ +     +  +  VE G A+GAIGAQSI EPGTQMTLKTFHF+G++SMN+T GV
Sbjct: 944  ETQLELLLTEALDKCMLAYVEPGEAVGAIGAQSISEPGTQMTLKTFHFSGISSMNVTLGV 1003

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PR+KEIIN AK ISTPIITA+LEC++N+ AAR+VK  IEKT LG+V+K +K V       
Sbjct: 1004 PRLKEIINAAKLISTPIITAKLECDNNKVAARIVKAVIEKTTLGEVSKYMKEVYAPGSCY 1063

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHF 1062
            I + LDM+ I+   L ++   V+ SI+   K   K   +++                   
Sbjct: 1064 ISVELDMDAIEQLKLNVDVHSVRRSILYGTKGIAKNAGMQM------------------- 1104

Query: 1063 ELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAE 1122
                LK  LP VIV+GI TV R VI E  +             Y LL+EG GLQ VMG+ 
Sbjct: 1105 ----LKAALPNVIVQGIPTVARAVINESNQSGTPT--------YNLLMEGYGLQDVMGSP 1152

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
            GIDG  T +NH+ EV+  LG+EAAR  I  EI+  M A+G+ ID+RH++LL+D+MTF+GE
Sbjct: 1153 GIDGLHTTTNHVLEVEDVLGVEAARTQISAEIDNIMSAYGIGIDQRHLLLLSDVMTFKGE 1212

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            VLGITRFG+ KM +SVLMLASFEKT DHLF+A+V+GR D I GVSECIIMG+ +P+GTG+
Sbjct: 1213 VLGITRFGVSKMRESVLMLASFEKTTDHLFDAAVHGRTDTIVGVSECIIMGMEVPVGTGL 1272


>gi|317419477|emb|CBN81514.1| DNA-directed RNA polymerase III subunit RPC1 [Dicentrarchus labrax]
          Length = 1390

 Score = 1194 bits (3089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/1271 (50%), Positives = 857/1271 (67%), Gaps = 57/1271 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  C   NG VKK   +L IIH++ K   
Sbjct: 129  LKRPNLAYLQKRGLKKKISDKCR----KRTICLNCSAFNGPVKKC-GLLKIIHEKYKTTK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V++ +Q F  AI H K  +  +  A   LNP+ VL +FKR+   D  +L ++  
Sbjct: 184  KVVDPFVSDFMQSFDIAIEHNKMVEPLLTRAQENLNPLVVLNMFKRIPQEDIPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPADLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILTYPERV+  N+E +R+ ++NGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGANFIQN 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A EL+ G +V+RHL DGD+VLFNRQPSLH++SIM H A++ P
Sbjct: 424  RHTQMKRFLKYGN-REKIAQELRFGDVVERHLIDGDIVLFNRQPSLHKLSIMAHIAKVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DR+    +   +  G D   RV LP PAI+KP+ LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRSKACQIVASILVGKDEKIRVTLPRPAIMKPMALWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V+++P     V  NL  K K Y  K            E +C ND FV   NSEL+ G L 
Sbjct: 603  VILKPSKECPVKANLRTKGKQYCGK-----------GEDLCYNDSFVVIHNSELMCGSLD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G    +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQLEAANAMSRLARLAPVFLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K  L+ + Y+ C+  I+    GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKHDLLDDGYKKCDEYIEALKTGKLQQQPGCTAEETLEALILRELSVIRDRAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVA+SFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA--TCP--PAGQRYLSPQQVS 818
            ++ G I+QF+YG DG+DPA+MEGK  EPL F R+L  ++A  TCP  PA    LS  ++ 
Sbjct: 892  SSTGDIIQFIYGGDGLDPADMEGKD-EPLEFKRVLDNIRAVYTCPYEPA----LSQNELV 946

Query: 819  EIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKT 878
               +  +       C ++FL  ++KF +   +++ K     +  G +D      +V ++ 
Sbjct: 947  LTADAIMKRADFLCCRDSFLEEIKKFIKSVSERIKKT---RDKYGINDNGTSEPKVLYQL 1003

Query: 879  SGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNI 938
              IT  QLE +++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNI
Sbjct: 1004 DRITPTQLEKYLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063

Query: 939  TQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            T GVPRIKEIIN +K ISTPIITA L+  D+ + AR+VKGRIEKTLLG++++ I+ V   
Sbjct: 1064 TLGVPRIKEIINASKNISTPIITANLDVEDDADFARLVKGRIEKTLLGEISEYIEEVFLP 1123

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-K 1057
                I++ L +E I+   L +NA+ V+ SI  + K+++K   I V     + + P  + K
Sbjct: 1124 DDCFILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDIAVHGEAVVCVSPRENSK 1182

Query: 1058 SKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQA 1117
            S +++ L SLK  LP V+V+GI  V R VI         + E   K KY+LLVEG  L+A
Sbjct: 1183 SSMYYVLQSLKEELPKVVVQGIPEVARAVI--------HIDEQSGKNKYKLLVEGDNLRA 1234

Query: 1118 VMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLM 1177
            VM   G++G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLLADLM
Sbjct: 1235 VMATHGVNGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLM 1294

Query: 1178 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP 1237
            +++GE+LGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM 
Sbjct: 1295 SYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMN 1354

Query: 1238 LGTGILKIRQR 1248
            +GTG+ K+  +
Sbjct: 1355 IGTGLFKLLHK 1365


>gi|126272809|ref|XP_001364762.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Monodelphis
            domestica]
          Length = 1390

 Score = 1194 bits (3089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/1244 (51%), Positives = 847/1244 (68%), Gaps = 48/1244 (3%)

Query: 32   CPRCGYINGMVKKAVAVLGIIHDRSK---------VTESLQEFASAITHTKESKAAVNVA 82
            C  CG  NG VKK   +L IIH++ K         V+  LQ F +AI + KE +  +  A
Sbjct: 156  CHYCGAFNGTVKKC-GLLKIIHEKYKTNKKVVDPVVSNFLQSFETAIEYNKEVEPLLGRA 214

Query: 83   TYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMD-GSQS 138
               LNP+ VL LFKR+   D  +L ++    +P  LI+T + VPP+ IRPSV+ D  S +
Sbjct: 215  QENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGT 274

Query: 139  NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQV 198
            NE+D+T +L  II  N  +++  +        +  W+ LQ++ A YINS++ G+P +M  
Sbjct: 275  NEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAP 334

Query: 199  ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
             +   GFVQRLKGKQGRFRGNLSGKRV+++GRTVISPDPNL+I EVA+P+ +A+ILT+PE
Sbjct: 335  KKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPE 394

Query: 259  RVSDHNIEKLRQCIQNGPDKYPGARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
            +V+  NI  +R+ ++NGP+ +PGA  I  R+      + YG  R ++A ELK G IV+RH
Sbjct: 395  KVNKANINFMRKLVRNGPEVHPGANFIQQRHMQMKRFLKYGN-REKMAQELKFGDIVERH 453

Query: 317  LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
            L DGDVVLFNRQPSLH++SIM H AR+ P RT RFNE VC PYNADFDGDEMN+H+PQTE
Sbjct: 454  LIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTE 513

Query: 377  EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
            EA+ EAL+LMG + NL TP+NGE L+A+ QDFLT ++L+T KDTF+DRA    +   +  
Sbjct: 514  EAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILV 573

Query: 437  GMD---RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
            G D   +V LP P ILKPV LWTGKQ+FS++++P     V  NL  K K Y         
Sbjct: 574  GKDEKIKVRLPPPTILKPVTLWTGKQVFSLILQPSDENPVRANLRTKGKQYCG------- 626

Query: 494  DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
                R E +C ND +V  +NSEL+SG + K TLG+G+K+ ++ +LLRD+G    +  M+R
Sbjct: 627  ----RGEDLCVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQTEAADAMSR 682

Query: 554  LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
            LA+L+  ++ N GFSIGI DV P + L   K +L++  Y+ C+  I+  N GKLQ +PGC
Sbjct: 683  LARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGC 742

Query: 614  DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
             A +TLEA+I   L+ IR+ AG AC+  L   NSPLIM+ CGSKGS INISQM+ACVGQQ
Sbjct: 743  TAEETLEALILKELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQ 802

Query: 674  SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
            ++ G R P+GF +RSLPHF + +K PAAKGFVANSFYSGL+ TEFFFHTM GREGLVDTA
Sbjct: 803  AISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTA 862

Query: 734  VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
            VKTA+TGYM RRL+K+LEDL  QYD +VR++ G I+QF+YG DG+DPA MEGK  EPL F
Sbjct: 863  VKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEF 921

Query: 794  DRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLD 853
             R+L  +KA  P   +  LS  ++    E  +       C E+FL  ++KF +   +K+ 
Sbjct: 922  KRVLDNIKAVFPCQSEPALSKNELVLTTESIMKRNEFLCCQESFLQEIKKFIKIVSEKIK 981

Query: 854  KKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGA 913
            K     +  G +D       V ++   IT  Q+E F++TC  +Y   ++E G+A+GA+ A
Sbjct: 982  KT---RDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCA 1038

Query: 914  QSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAA 973
            QSIGEPGTQMTLKTFHFAGVASMNIT GVPRIKEIIN +K ISTPIITA+L+ +D+ + A
Sbjct: 1039 QSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDQDDDADYA 1098

Query: 974  RVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPK 1033
            R+VKGRIEKTLLG++++ I+ V       I++ L +E I+   L +NA+ V+ SI  T K
Sbjct: 1099 RLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-TSK 1157

Query: 1034 IKLKQQHIKVLDFRKLEIFPPVD-KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEK 1092
            +++K   + V     L + P  + KS +++ L  LK  LP V+V+GI  V R VI     
Sbjct: 1158 LRVKPGDVAVHGEAVLCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVARAVI----- 1212

Query: 1093 EKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIID 1152
                + E   K+KY+LLVEG  L+AVM   G+ G KT SN+ +EV++TLGIEAAR  II+
Sbjct: 1213 ---HIDEQSGKEKYKLLVEGDNLRAVMATHGVQGTKTTSNNTYEVEKTLGIEAARSTIIN 1269

Query: 1153 EINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLF 1212
            EI  TM  HGMSID+RH+MLL+DLMT++GEVLGITRFG+ KM +SVLMLASFEKTADHLF
Sbjct: 1270 EIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLF 1329

Query: 1213 NASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQ---RDAVPP 1253
            +A+  G+ D + GVSECIIMGIPM +GTG+ K+     RD  PP
Sbjct: 1330 DAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADRDPNPP 1373


>gi|431904080|gb|ELK09502.1| DNA-directed RNA polymerase III subunit RPC1 [Pteropus alecto]
          Length = 1375

 Score = 1192 bits (3083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/1283 (49%), Positives = 846/1283 (65%), Gaps = 83/1283 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKNICHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPMVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ +QNGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCGKG-----------EDLCINDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCQSEPALSKNELILTTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMKKNEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVI---------ALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP 1053
            I++               ++   + ++ + V   +  TP+                    
Sbjct: 1128 ILVKLSLERIRLLRLELRVKPGDVAVHGEAV---VCVTPREN------------------ 1166

Query: 1054 PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGT 1113
               KS +++ L  LK  LP V+V+GI  V R VI   E+           KKY+LLVEG 
Sbjct: 1167 --SKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQ---------SGKKYKLLVEGD 1215

Query: 1114 GLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1173
             L+AVM   G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL
Sbjct: 1216 NLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLL 1275

Query: 1174 ADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMG 1233
            +DLMT++GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMG
Sbjct: 1276 SDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMG 1335

Query: 1234 IPMPLGTGILKIRQ---RDAVPP 1253
            IPM +GTG+ K+     RD  PP
Sbjct: 1336 IPMNIGTGLFKLLHKADRDPSPP 1358


>gi|393235145|gb|EJD42702.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Auricularia delicata TFB-10046 SS5]
          Length = 1404

 Score = 1191 bits (3081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1296 (48%), Positives = 853/1296 (65%), Gaps = 54/1296 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR---SK 57
             R P +E L++  L K++    +T+  K + CP C  ING VKK    L I+HD+    K
Sbjct: 126  FRRPGLENLQRLTLCKAV----NTLCRKVIVCPYCASINGTVKKG-GTLKIVHDKYRAKK 180

Query: 58   VTESLQEFASAITHTKESKAAVNVATYI-------LNPVNVLFLFKRMTDTDCEVLYLSE 110
              + +++F S      E +   ++ TY+       LNP+ VL LFKR++D DCE+L +  
Sbjct: 181  TADEMEKFKSTFKSAVEFQK--DLGTYLSKAVIEELNPLKVLDLFKRISDEDCELLGMKP 238

Query: 111  ---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               RPE  +   I+VPP+ IRPSV  DG  SNE+D+T +L  I+ +N  ++Q + +    
Sbjct: 239  VHGRPEHYLWQYISVPPVCIRPSVAQDGG-SNEDDLTVKLAEIVFSNTLIKQGIQKGAPI 297

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
             + +  WE LQ+ VA YINS++ G+  +    RP+ GF QRLKGKQGRFRGNLSGKRV++
Sbjct: 298  QQLMEQWEFLQISVAVYINSEMPGLQ-NQPNQRPIRGFCQRLKGKQGRFRGNLSGKRVDF 356

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR-MIR 286
            +GRTVISPDPNL+I EVA+P R+A+ILTYPERV+  N+EKLR  ++NGPD +PGA  ++ 
Sbjct: 357  SGRTVISPDPNLRIDEVAVPQRVAKILTYPERVTSSNLEKLRLAVRNGPDVHPGANYVVA 416

Query: 287  YPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW 346
              +G  + L    R+ +A +L+ G +V+RH+ DGD++LFNRQPSLH++SIMCHRA++ PW
Sbjct: 417  ASNGFKKFLKFGNRDDVADKLRVGDVVERHVIDGDIILFNRQPSLHKLSIMCHRAKVRPW 476

Query: 347  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQ 406
            RT R NE VC PYNADFDGDEMN+HVPQTEEAR EA  LM V NNL TP+NGE ++A+ Q
Sbjct: 477  RTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEASQLMWVVNNLVTPRNGEPVIAAIQ 536

Query: 407  DFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIR 466
            DF+T+S+L+ RKD FY RA F+ +C Y GD +  ++LP P ILKP  LWTGKQ+FS L+R
Sbjct: 537  DFITASYLLCRKDRFYTRAQFTQICGYFGDALVHIELPPPVILKPARLWTGKQIFSCLLR 596

Query: 467  PHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATL 526
            P+ +  V VN+  K   +     +           +  NDG++   NSE++SG L KAT+
Sbjct: 597  PNKSTNVLVNVETKCNQFEKPDPKHYPSWMTPENDLSLNDGWLVIVNSEIMSGTLDKATI 656

Query: 527  GNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGK 586
            G+G K  ++  +++DYG    +  M RLAKL AR++ N GFSIGI+DV P   L+ +K +
Sbjct: 657  GSGKKKSVFGAIMKDYGPQEAALAMGRLAKLCARFLANFGFSIGINDVTPGPLLTGEKQR 716

Query: 587  LISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRN 646
            L++E YE C   I +   G+LQ KPGC+  QTLEA+I+DIL+ +R   GK CM  L   N
Sbjct: 717  LVTEAYEKCQKLIDQAKRGQLQNKPGCNTDQTLEALISDILSDVRGQVGKICMKELSRHN 776

Query: 647  SPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVA 706
            +P  M+ CGSKGS  N++QMVACVGQQ +GGRR P+GF DRSLPHF +K+K+PA+KGFV+
Sbjct: 777  APWTMATCGSKGSVDNVAQMVACVGQQIIGGRRVPDGFQDRSLPHFEKKSKDPASKGFVS 836

Query: 707  NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGG 766
            NSFY+GL+ATEF  H + GREGLVDTAVKTA+TGYM RRL+KALEDL+ QYD SVRN+ G
Sbjct: 837  NSFYTGLTATEFLLHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNSVG 896

Query: 767  CIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLA 826
             +VQF YG+DG+DPA ME +   P+ F R      AT    G   L P ++ E+ +  ++
Sbjct: 897  GVVQFYYGNDGLDPACMEAED-NPVEFVRAWKHAFATAAREGPGLL-PYEIEELAKTTIS 954

Query: 827  AYGK-ESCSEAFLNSLRKFFE--------------GQQDKLDKKIKFVEDIGWDDKS-QI 870
            ++G      E +LN++  F                G  D  DK     ++  W+  + + 
Sbjct: 955  SFGALADAEEDYLNTVEDFVRINLVEKLAAIRRRYGLLDGRDKPGARSKNRDWNAGAGED 1014

Query: 871  LEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHF 930
            +    + T  + + QL +F+Q C+SRY   ++E G+ +GAIGAQSIGEPGTQMTLK+FHF
Sbjct: 1015 VINAVNNTLKVAKPQLLLFLQNCWSRYVQSKIEPGSNVGAIGAQSIGEPGTQMTLKSFHF 1074

Query: 931  AGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAK 990
            AG+ASMN+T GVPRIKEIIN AK I+TPII+  L    +E +AR VKGR+EKT LG +A 
Sbjct: 1075 AGLASMNVTLGVPRIKEIINAAKTIATPIISCMLVDRQSEQSARSVKGRLEKTRLGDIAS 1134

Query: 991  SIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR-KL 1049
             I+         I I +D+  I    L ++ D +K +IV+  K+K+K+  + VL  + ++
Sbjct: 1135 VIEEAWAPDYTYIGIIVDVLAIHRLQLELSLDDIKWAIVRAKKLKIKEGTVSVLPSKNRI 1194

Query: 1050 EIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLL 1109
             I+  V+    +F L  L+  LP VIVKG+ +V+R VI +K+KE R+    G+K +  L+
Sbjct: 1195 RIY--VEGETSYFRLRELRRALPDVIVKGVPSVQRAVIVKKDKEDRR----GKKGEKELI 1248

Query: 1110 VEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRH 1169
            VEG GLQ VM  +GI G  T SNHI EV + LGIEAAR  I+D+I  TM+ HG+++D RH
Sbjct: 1249 VEGYGLQEVMITDGIIGTHTTSNHIIEVAKVLGIEAARATIVDQIGYTMREHGLTVDARH 1308

Query: 1170 MMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSEC 1229
            +MLL D MT +GEVLGITRFG+ KM  SVLMLASFEKT DHLF+A+  G++D + GVSE 
Sbjct: 1309 IMLLGDCMTTKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAAAVGKNDSLTGVSEA 1368

Query: 1230 IIMGIP-MPLGTGILKIRQRDAVPPMLKYGAPDPIM 1264
            IIMG P    GT +  +     V P      P P++
Sbjct: 1369 IIMGNPSAKFGTSLPAL-----VTPAPTLSTPRPLL 1399


>gi|342320897|gb|EGU12835.1| DNA-directed RNA polymerase [Rhodotorula glutinis ATCC 204091]
          Length = 1804

 Score = 1187 bits (3072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1317 (47%), Positives = 848/1317 (64%), Gaps = 106/1317 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
             R P +++L     + +  K+ + +  K   CP CG ING+VKK +  + I H++ +   
Sbjct: 473  FRRPNLDSL----TIAAYSKQLAALCRKCTTCPHCGAINGVVKK-IGTMRIGHEKWRGRN 527

Query: 58   ----------------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDT 101
                             T   + FA A+   K  +  ++ A   LNP+ VL LF+++T +
Sbjct: 528  LKKDAGGRDGAEGKGNYTAWRESFAEAVKEDKMLEPHIDKAIDDLNPLKVLTLFRKITSS 587

Query: 102  DCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQ 158
            DCE+L L   + RPE+ +   I+VPP+ IRPSV  + + +NE+D+T +L  I+  NA ++
Sbjct: 588  DCELLGLDPTAGRPEEFLWQYISVPPVCIRPSVAQEAA-TNEDDLTVKLTEIVFMNAVIK 646

Query: 159  QELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRG 218
              L +  +    +  W+ LQ+ VA YINS++ G+P +M   +P+ G  QRLKGKQGRFRG
Sbjct: 647  TGLAKGVTTQNLMEQWDFLQLAVATYINSEMPGIPTAMG-QKPMRGLCQRLKGKQGRFRG 705

Query: 219  NLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDK 278
            NLSGKRV+++GRTVISPDPNL I +VA+P R+A+ILTYPERV+ HNIE+LRQ ++NG D 
Sbjct: 706  NLSGKRVDFSGRTVISPDPNLMIDQVAVPERVAKILTYPERVTAHNIERLRQAVRNGTDV 765

Query: 279  YPGARMIRYP--DGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSI 336
            +PGA  I     DG+ + L    R  +A +L+ G +V+RHL D D+VLFNRQPSLHR+SI
Sbjct: 766  HPGANFINQGGGDGSKKFLKYGDREFMADKLRVGDVVERHLRDDDIVLFNRQPSLHRLSI 825

Query: 337  MCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPK 396
            + HR ++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEARTEA  LM ++ NL TP+
Sbjct: 826  LSHRVKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARTEAFQLMNIKRNLVTPR 885

Query: 397  NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWT 456
            NGE ++A+TQDF+T  +LITR+DTF++R  F  MC Y+ D    ++LP P ILKP  LWT
Sbjct: 886  NGEPIIAATQDFITGCYLITRRDTFFNRQEFVQMCSYLQDAELEIELPPPTILKPERLWT 945

Query: 457  GKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSEL 516
            GKQ+F+VL+RP+ +  V VNL  K KT+      TE D       M  NDG++  +NSE+
Sbjct: 946  GKQVFNVLMRPNKDSPVNVNLECKNKTFGKP--STEFDMSYP-NFMSVNDGYLVVQNSEI 1002

Query: 517  ISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQP 576
            ISG   K+T+G+GNK  +++V+ RD+G    + CMNR+AKL ARW+ N GFSIGI DV P
Sbjct: 1003 ISGVFDKSTVGDGNKKSVFAVIQRDFGEDHAAKCMNRMAKLCARWLANKGFSIGISDVTP 1062

Query: 577  KKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGK 636
             + L  +K  L+   Y   +  I++   GKL+ +PG +  QTLE++I+  L+R+R+  G+
Sbjct: 1063 GERLKAEKDDLVRRAYGQADEYIEKAARGKLECQPGSNLEQTLESLISGDLSRVRDQVGE 1122

Query: 637  ACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKA 696
             CM  L   N+PLIM+ CGSKGS IN+SQMVACVGQQ + G R PNGF DRSLPHFP+ A
Sbjct: 1123 ICMTELSRNNAPLIMATCGSKGSKINVSQMVACVGQQIIAGHRVPNGFQDRSLPHFPKGA 1182

Query: 697  KEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
             +P AKGFV+NSFYSGL ATEF FH + GREGLVDTAVKTA+TGYM+RRL+KALEDLS +
Sbjct: 1183 IDPLAKGFVSNSFYSGLRATEFLFHAISGREGLVDTAVKTAETGYMARRLMKALEDLSSR 1242

Query: 757  YDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVK--------------- 801
            YD SVRNA G +VQF+YGDDG+DPAN+EG  G+P+ F+R     +               
Sbjct: 1243 YDRSVRNATGGVVQFIYGDDGLDPANLEG-DGKPVVFERTWAHARVSSPSSPPPAVHEFD 1301

Query: 802  -----ATCPPAGQRYLSPQQVSEIV-EKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKK 855
                 A      +  L P +++ +V EK    Y   SCSE FL  LR+F +  Q    + 
Sbjct: 1302 GFFAQALRLDVNEEGLLPYEINRLVAEKTATPYFTNSCSEEFLRELREFVD--QQIAQQA 1359

Query: 856  IKFVEDIG--------------WDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKR 901
             K+ E+ G              +      ++ + +  + +T  Q+E F+Q C++++   +
Sbjct: 1360 AKYREEYGMPPALAPLKRNQSKFGKADAAMQAIVNNKTKVTVTQIEEFLQLCWTKFVKAK 1419

Query: 902  VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIIT 961
            +E G+A+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN AK ISTPII+
Sbjct: 1420 IEPGSAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKTISTPIIS 1479

Query: 962  AELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIA--------------- 1006
            A+L  +  E AAR+VKGR+EKT LG V+  +  +++  L  +V+                
Sbjct: 1480 AKLFQDKLEQAARIVKGRVEKTYLGDVSHRLITLVSLELTDLVVQIASVIAGVYSQGQMY 1539

Query: 1007 ----LDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL----DFRKLEIFPPVDKS 1058
                +DM  I+   L +  D +  SI   P++K+K   I V     +   +      DK 
Sbjct: 1540 VSVHIDMRAIRALQLEVTLDSIAASISSAPRLKIKSADITVKRHTDEIHIVAHHNGEDKM 1599

Query: 1059 KIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
              +  L  L+ VLP + VKG+  ++R VI          ++NGE  K  LLVEG GL+ V
Sbjct: 1600 PAYRRLMWLRRVLPSISVKGVPGLQRAVI----------QQNGEGIK-ELLVEGEGLREV 1648

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            M  +G+ G +TKSNH+ EV++ LGIEAAR  IID+I+ TM +HG+ +D RH+MLL D+M 
Sbjct: 1649 MVTDGVIGTQTKSNHVMEVEKVLGIEAARKTIIDQIHYTMDSHGLGVDPRHLMLLGDVMC 1708

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIP 1235
            F+GEVLGITRFG+ KM  SVLMLASFEKT DHLF+AS N R D I+GVSECII+G P
Sbjct: 1709 FKGEVLGITRFGVSKMKDSVLMLASFEKTTDHLFDASFNARRDPIQGVSECIILGSP 1765


>gi|290999395|ref|XP_002682265.1| predicted protein [Naegleria gruberi]
 gi|284095892|gb|EFC49521.1| predicted protein [Naegleria gruberi]
          Length = 1426

 Score = 1187 bits (3071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1276 (49%), Positives = 834/1276 (65%), Gaps = 70/1276 (5%)

Query: 16   KSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVT--------------ES 61
            K++ KK   +  K  +CP CG +NG V K  A+  I+H++ KV               E 
Sbjct: 151  KALYKKVGELCKKCSQCPHCGSLNGKVTKLNAI-KIVHEKYKVASTRKGKDDIDQQSREF 209

Query: 62   LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIIT 118
              EF  A+    E +  +  A   +NP+  L LFK ++DTD EVL ++    RPE  I+T
Sbjct: 210  QSEFGLAVQLNPEIEPFLGEAQDDINPIRCLRLFKNISDTDVEVLNMNPKVVRPENFILT 269

Query: 119  NIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQ 178
            +I VPP+ IRP+V  DG  +NE+D+T ++K+II+TN  L++ + +       +  W+TLQ
Sbjct: 270  HILVPPLVIRPTVNTDGG-TNEDDLTAQMKKIIETNIILRESVEQGAIVQNFMEKWDTLQ 328

Query: 179  VEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPN 238
            +E A YINSD R +P  +   +      QRLKGK GRFRGNLSGKR  +TGRTVISPDPN
Sbjct: 329  LETALYINSDTRNIPSFVTKKKVSKTLCQRLKGKHGRFRGNLSGKRANFTGRTVISPDPN 388

Query: 239  LKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YG 297
            L+I +VAIP  +A++LTYPE V+  N + L+  I NGP+ +PGA  +   DG  + L + 
Sbjct: 389  LEINQVAIPELVAKVLTYPEVVNRTNKKLLQSLILNGPEVHPGANFVIKSDGIRKNLAFA 448

Query: 298  KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCN 357
            K + ++A  LK G IV+RH+ +GD  LFNRQPSLHR+SIMCHR +++P+RT RFN   C 
Sbjct: 449  KDKMEVAKNLKFGDIVERHVMNGDYALFNRQPSLHRLSIMCHRVKVLPYRTFRFNVCDCA 508

Query: 358  PYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR 417
            PYNADFDGDEMN+H+PQTEEA+ EA +LM +  NL TPKNG+ +++  QDFLT+++ +TR
Sbjct: 509  PYNADFDGDEMNVHIPQTEEAKAEAGMLMDILKNLITPKNGDPVISCNQDFLTAAWKMTR 568

Query: 418  KDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNL 477
            K+TF+DRA F ++C YMG    ++DLP P ILKP+ELWTGKQLFS+L++P+ N  V+VN 
Sbjct: 569  KNTFFDRAEFCMLCSYMGIEDKKIDLPPPTILKPIELWTGKQLFSLLVKPNNNTNVFVNF 628

Query: 478  TVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
              K K Y            ++ ETMCPNDG+V FRNS LI G L K  LG+G+K  L+ V
Sbjct: 629  ETKAKNY------------LKDETMCPNDGYVCFRNSYLICGNLDKKILGDGSKSSLFYV 676

Query: 538  LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNV 597
            L+R  G    + CM R+A++++RW+ N+GFSIGIDDV P  +L++KK  ++SE Y VC+ 
Sbjct: 677  LIRTVGPAYAAACMARVARVASRWLMNYGFSIGIDDVMPSAQLTEKKKMILSEGYAVCDE 736

Query: 598  KIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSK 657
             IK Y +GKL+ +PGC+  QTLEA +   L+ IR  AG  C+  L W N+PL MS CGSK
Sbjct: 737  YIKLYKDGKLEPQPGCNMEQTLEAKLNRELSEIRGRAGSMCLDELHWLNAPLTMSVCGSK 796

Query: 658  GSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATE 717
            GS INISQM+ACVGQQ+VGG R  NGF++R+LPHFP  A++PAAKGFV+NSF++GL+ TE
Sbjct: 797  GSVINISQMIACVGQQTVGGTRIANGFMNRTLPHFPMFARDPAAKGFVSNSFFTGLTPTE 856

Query: 718  FFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDG 777
            FFFHTMGGREG+VDTAVKTA+TGYM RRL+KALEDL + YD SVR+A   ++QF YGDDG
Sbjct: 857  FFFHTMGGREGIVDTAVKTAETGYMQRRLMKALEDLFVAYDGSVRSADNTVIQFKYGDDG 916

Query: 778  MDPANMEG-KSGEPLNFDRLLMKVK-ATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSE 835
            MDP  ME  +SG PLNF  ++M  K    P   ++ L+P ++ + ++  L        S+
Sbjct: 917  MDPHRMESEESGRPLNFTFVMMHEKNINLPTKDEKALTPDEIRQKLDSFLKEKESNIFSD 976

Query: 836  AFLNSLRKFFEGQQDKLDKKIKFV---EDIGWDDKSQILEEVTHKTSGITEKQLEVFIQT 892
             F++ L  F      KL+  +K V     I  ++++   E+V H    IT++QL  F + 
Sbjct: 977  KFIDELSTFTNNYIFKLENLLKGVAAANSIRDENENNAWEKVVHYIEKITDRQLTSFFRA 1036

Query: 893  CFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGA 952
            C S+Y     E G  +G I  QSIGEP TQMTLKTFHFAGVASMN+T GVPRIKEII+  
Sbjct: 1037 CRSKYFRALAEPGEPVGGIAGQSIGEPTTQMTLKTFHFAGVASMNVTLGVPRIKEIIDAT 1096

Query: 953  KRISTPIITAELEC------NDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIA 1006
            K ISTPIITA L+          E AARVVKGRIEKT LGQV   I+ V    +  I I 
Sbjct: 1097 KNISTPIITAYLDTPLTATKKQKEMAARVVKGRIEKTTLGQVVNYIREVYNLGICYIEID 1156

Query: 1007 LDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLE--------------IF 1052
            LD++ I    L I  + VK SI+ +P +K ++   K  D  KL               ++
Sbjct: 1157 LDVKQISALQLDITPETVKNSILYSPLMKFEKGKEKSKDKTKLSDEPNLVQIQKGKVRVY 1216

Query: 1053 PP-VDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVE 1111
            PP VD+ +++F +  LK  LP VIV GI T  R VI            N EK    LLVE
Sbjct: 1217 PPSVDRDRMYFNIQKLKRYLPEVIVAGIPTTNRAVI------------NEEKGNVYLLVE 1264

Query: 1112 GTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMM 1171
            GT L AVMG  G+    TK+N+I E+ QTLGIE+AR  I+DEI  T  ++GM+ID RH+ 
Sbjct: 1265 GTDLLAVMGTPGVLAKTTKTNNIIEISQTLGIESARQLIMDEIKYTTGSYGMNIDTRHIK 1324

Query: 1172 LLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECII 1231
            LLAD+MTF+G++ GI R GI K+  SVL +ASFE+T DHLF A+ + R D + GVSECII
Sbjct: 1325 LLADIMTFKGDIFGIQRHGIIKIRDSVLKMASFEQTTDHLFEAASHTRVDDVNGVSECII 1384

Query: 1232 MGIPMPLGTGILKIRQ 1247
            MG+P+P+GTG+ ++ Q
Sbjct: 1385 MGVPIPIGTGLFRLLQ 1400


>gi|241633681|ref|XP_002408700.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
            scapularis]
 gi|215501234|gb|EEC10728.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
            scapularis]
          Length = 1394

 Score = 1181 bits (3055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1273 (49%), Positives = 834/1273 (65%), Gaps = 48/1273 (3%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVT- 59
            ++ P +  L+K  L K I+++C     K   C  CG  NG VKK   +L ++H+R K T 
Sbjct: 129  LQRPTLSYLQKKALHKKIIERCR----KQSACHFCGARNGQVKKC-GLLKLVHERFKATK 183

Query: 60   -------ESLQEFASAITHTKESKAAVN-VATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                   E L++F  A  +  E  + +  V + ILNP+ VL LF+R+ D D  +L ++  
Sbjct: 184  KNDAMLAEFLEDFDEARGYNPELDSVMGKVTSDILNPLVVLHLFRRILDEDVPLLVMNPK 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              RPE LI+T I VPP+ IRPSV+ +  + +NE+D+T +L  II  N  +Q+        
Sbjct: 244  CGRPEDLILTRIPVPPLCIRPSVVSELKAGTNEDDVTVKLTEIIFLNDVIQRHRASGAKM 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A Y+NS+  G+P +MQ  +P  GFVQRLKGK GRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYVNSETSGIPLNMQPKKPTRGFVQRLKGKHGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY 287
            +GRTVISPDPNL+I +V +P+ +A+ILTYPERV+ HN+  +R  ++NGPD +PGA  +  
Sbjct: 364  SGRTVISPDPNLRIDQVGVPVHVAKILTYPERVTQHNLALMRTLVRNGPDVHPGANFLES 423

Query: 288  PD-GTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW 346
             D G  R L    R+ LA +L+ G +V+RHL DGDVVLFNRQPSLH++SIM H A+++P 
Sbjct: 424  RDSGFKRYLRYGNRDLLAQQLRPGDVVERHLRDGDVVLFNRQPSLHKLSIMAHLAKVLPH 483

Query: 347  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQ 406
            RT RFNE VC PYNADFDGDEMN+H+PQTEEAR EAL+LMG + NL TP+NGE L+A+ Q
Sbjct: 484  RTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALVLMGTRANLVTPRNGEPLIAAIQ 543

Query: 407  DFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFSV 463
            DF+T  +L+T++D F+DRA  + +  YM  G D    V+LP PAI KPV LWTGKQ+FS+
Sbjct: 544  DFITGGYLLTQRDVFFDRAKAAQLAAYMLAGKDVSISVELPPPAIRKPVCLWTGKQIFSL 603

Query: 464  LIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGK 523
            +IRP  +  V  +L  K K+Y      T G+E      MC ND +V  RNSEL+SG + K
Sbjct: 604  IIRPSRSCPVLASLRAKGKSY------TSGEE------MCANDAYVLIRNSELLSGTMDK 651

Query: 524  ATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK 583
             T+G+G+K+ ++ +LLRDYG    +  M RLA++++ ++ N GFSIGI DV P   L   
Sbjct: 652  GTMGSGSKNNIFYILLRDYGDQYAADAMWRLARIASFYMQNRGFSIGIGDVTPGAGLLKA 711

Query: 584  KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLP 643
            K  L+SE Y  C   I++   GKLQ +PGC+  +TLEAV    L+ +R+ AGKAC+  L 
Sbjct: 712  KHDLVSEGYARCEEYIQQLKCGKLQAQPGCNEEETLEAVSLKELSVVRDHAGKACLRELH 771

Query: 644  WRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKG 703
              NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R PNGF DRSLPHF R  + P A+G
Sbjct: 772  KTNSPLIMAVCGSKGSFINISQMIACVGQQAISGHRVPNGFEDRSLPHFERNDRTPQARG 831

Query: 704  FVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRN 763
            FV +SFYSGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K+LEDL   YD +VRN
Sbjct: 832  FVEDSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCSHYDMTVRN 891

Query: 764  AGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEK 823
            + G IVQF YG DG+DP  MEGK   P++F R++   +A  P  G++ L    +  I E+
Sbjct: 892  SCGDIVQFCYGADGLDPPAMEGKDDTPVDFGRVMELTRARKPCRGEKPLDQDAILRIGEE 951

Query: 824  QLAAYGKESCSEAFLNSLRKFFEGQQDKL-DKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
             L     E C E+F  +L KF  G   K+   + +   D   D +  +L ++      +T
Sbjct: 952  VLGGKSYEGCGESFREALSKFVHGYAAKVASTRARHGLDGSGDARPLVLWQLDR----LT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              QL  F  TC  +Y    +E  TA+GA+ AQSIGEP TQMTLKTFHFAGVASMNITQGV
Sbjct: 1008 ASQLRSFFATCREKYFRAVMEPATAVGAVCAQSIGEPATQMTLKTFHFAGVASMNITQGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA L  N +   AR VKGRIEKT LG+V++ ++ V       
Sbjct: 1068 PRIKEIINASKNISTPIITAALAVNQDAEYARRVKGRIEKTTLGEVSEYLEEVFLPDECF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP-VDKSKIH 1061
            ++I LD++ I+   L +NAD V  SI  T K+++K Q++ V+    + + P    K  ++
Sbjct: 1128 VLIKLDLDRIRLLQLEVNADTVCYSIA-TSKLRIKGQNLSVVGSAVITVRPTETAKMSLY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L +LK  LP V++KGI +  R VI   +         G    Y        L+ VM  
Sbjct: 1187 YALQTLKEQLPSVVIKGIPSTSRAVIHADDTV-------GPTTTYPAAGGRGRLREVMAT 1239

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+  EV++ LGIEAAR  II EI  TM++HG+S+D+RH+MLLADLMTFRG
Sbjct: 1240 YGVLGTRTSSNNTSEVEKCLGIEAARATIIREIGVTMESHGISVDRRHLMLLADLMTFRG 1299

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITR G+ +M +S LMLASFE+TADHLF+A+  G+ D I GVSE II+G+PM +GTG
Sbjct: 1300 EVLGITRHGLARMKESALMLASFERTADHLFDAAYYGQVDEITGVSESIILGVPMGIGTG 1359

Query: 1242 ILKIRQRDAVPPM 1254
               +  R    P+
Sbjct: 1360 FFDMVHRVDWRPL 1372


>gi|443729218|gb|ELU15202.1| hypothetical protein CAPTEDRAFT_219447 [Capitella teleta]
          Length = 1381

 Score = 1180 bits (3052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1270 (49%), Positives = 846/1270 (66%), Gaps = 58/1270 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P M  L+K  L K I +KC     K   CP CG ING VKK   +L I+H+R K   
Sbjct: 123  LKRPNMSYLQKKGLRKKIGEKCK----KTSICPYCGSINGTVKKC-GLLKIVHERYKHNK 177

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  +++ + EF +A+ + KE +  +     +LNP+ V  LFK + + D  +L +S  
Sbjct: 178  KKEDAVMSDLVIEFETAMEYNKEIEPLLGKTQEMLNPLIVHNLFKNICEEDIPLLLMSAD 237

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              RPE+LI+T I VPP+ IRPSVI D  + +NE+DIT ++  I+  N  + +        
Sbjct: 238  SCRPEELILTRIIVPPLCIRPSVISDLKAGTNEDDITMKMTEILFLNDVIVKHRASGAKM 297

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++VA   NS+  G+P  M   +P+ GF QRLKGKQGRFRGNLSGKRV++
Sbjct: 298  QMIMEDWDYLQLQVALLFNSETSGIPLHMMPKKPMRGFTQRLKGKQGRFRGNLSGKRVDF 357

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPN++I +VA+P+ +A+ILTYPERV+  N+  +++ + NG D +PGA  I  
Sbjct: 358  SGRTVISPDPNMRIDQVAVPVHVAKILTYPERVNYANLSLMKKLVTNGCDSHPGANFILQ 417

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R  +    + YG  R ++A ELK G IV+RHL D D+VLFNRQPSLH++SI    A++MP
Sbjct: 418  RGTNLKKFLKYGN-RAKIANELKVGDIVERHLLDRDIVLFNRQPSLHKLSIQAFYAKVMP 476

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE  CNP+NADFDGDEMN+H+PQTEEA+ EA++LMG ++N+ TP+NGE L+A+ 
Sbjct: 477  HRTFRFNECCCNPFNADFDGDEMNLHLPQTEEAKAEAIVLMGSKSNIVTPRNGEPLIAAI 536

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR---VDLPTPAILKPVELWTGKQLFS 462
            QDF+T  +L+T+KD F+DRA    +   +   MDR   V+LP P I KP+++W+GKQ+FS
Sbjct: 537  QDFITGGYLLTQKDVFFDRAKACQLASAILSQMDRSTKVELPPPCIFKPLKMWSGKQIFS 596

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            +++RPH +  V +NL  K K Y+            + E +C  D FV   NS+L++G + 
Sbjct: 597  LILRPHQSSNVKINLRTKGKNYT------------KDEDLCIKDSFVVVHNSDLLAGCMD 644

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRDYG  A +  ++RLA+L   ++ N GFSIGI DV P   L  
Sbjct: 645  KGTLGSGSKNNVFYLLLRDYGEEAAAVSLSRLARLCPAYLSNRGFSIGIGDVTPGLGLLQ 704

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K  L+   Y  C   I+E  E +L+ +PGC   +TLE++I   L+ IR+ AG AC+  L
Sbjct: 705  AKQSLLDAGYSKCIEYIQELKENRLKSQPGCSPEETLESMILKELSVIRDHAGNACLREL 764

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G+R PNGF DR+LPHF R AK+PAA+
Sbjct: 765  HKTNSPLTMAVCGSKGSFINISQMIACVGQQAISGKRVPNGFEDRALPHFERHAKDPAAR 824

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFV+NSFYSGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 825  GFVSNSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 884

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            N+ G IVQF++G DG+DP+ MEGK  +P++F R++   +   P    R L+  Q+ +IV+
Sbjct: 885  NSMGEIVQFVFGGDGLDPSCMEGKD-KPVDFKRIMEHTQCLHPCQKDRNLNGDQLEKIVK 943

Query: 823  KQLAAYGKESCSEAFLNSLRKF---FEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTS 879
              L       CS  F + L +F   F  Q D    K K  +            EV H+  
Sbjct: 944  AALDLEEFRDCSGDFRDELLEFVAEFRLQLDTTHNKYKMEQADS--------PEVLHQLK 995

Query: 880  GITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNIT 939
             +T  Q++ F+  C +++   ++E GTA+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT
Sbjct: 996  RVTATQVKEFLVCCRNKFMRAKIEPGTAVGAVAAQSIGEPGTQMTLKTFHFAGVASMNIT 1055

Query: 940  QGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSR 999
            QGVPRIKEIIN +K ISTPIITA LE + +   ARVVKGRIEKTLLG+V++ I+ V    
Sbjct: 1056 QGVPRIKEIINASKNISTPIITAHLENDLDPEFARVVKGRIEKTLLGEVSEYIEEVFLPD 1115

Query: 1000 LASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KS 1058
               ++I LD++ I+   L + +D +KESI+ T K+KLK  +++V     L + P    KS
Sbjct: 1116 DCFLLIKLDLDRIRLLKLEVTSDSIKESIL-TAKLKLKPMNVRVHSNAILCVAPTESAKS 1174

Query: 1059 KIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
             +++ L  LK  LP VI+KGI +V+R VI         V E      Y+LLVEG  LQ+V
Sbjct: 1175 SMYYVLQQLKQDLPKVIIKGITSVQRAVI--------HVDEAKGDSCYKLLVEGNNLQSV 1226

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            +   G+    TKSN+ +E ++TLGIEAAR  II+E+  TM  HGM+ID RH+MLLADLMT
Sbjct: 1227 IATPGVKANDTKSNNTYEAEKTLGIEAARSTIINEVVYTMVNHGMNIDIRHIMLLADLMT 1286

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
             RGEVLGITRFG+ KM +SVLMLASFEKTADHL+ AS +G+ D I GVSECIIMGIPM +
Sbjct: 1287 CRGEVLGITRFGLAKMKESVLMLASFEKTADHLYEASYHGQKDAICGVSECIIMGIPMSI 1346

Query: 1239 GTGILKIRQR 1248
            GTG+ K+  +
Sbjct: 1347 GTGLFKLLHK 1356


>gi|444720682|gb|ELW61459.1| DNA-directed RNA polymerase III subunit RPC1 [Tupaia chinensis]
          Length = 1368

 Score = 1179 bits (3050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/1275 (50%), Positives = 847/1275 (66%), Gaps = 74/1275 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKNICHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSHFLQSFETAIEHNKEVEPLLGKAQENLNPLIVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EV                +  NI  LR+ ++NGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEV----------------NKANINFLRKLVRNGPEVHPGANFIQQ 407

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 408  RHMQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 466

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 467  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 526

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 527  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVCLPPPTILKPVTLWTGKQIFS 586

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 587  VILRPSDDNPVRANLRTKGKQYCGKG-----------EDLCVNDSYVTIQNSELMSGSMD 635

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 636  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 695

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 696  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 755

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 756  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFDKHSKLPAAK 815

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 816  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 875

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +K+   PA    LS  ++    E
Sbjct: 876  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKSE--PA----LSKNELVVTTE 928

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 929  SIMKKNEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 985

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 986  PTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1045

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1046 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1105

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I+I L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS ++
Sbjct: 1106 ILIKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1164

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1165 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1216

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G KT SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1217 HGVKGTKTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1276

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1277 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1336

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1337 LFKLLHKANRDPNPP 1351


>gi|156370189|ref|XP_001628354.1| predicted protein [Nematostella vectensis]
 gi|156215328|gb|EDO36291.1| predicted protein [Nematostella vectensis]
          Length = 1398

 Score = 1177 bits (3045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/1235 (49%), Positives = 827/1235 (66%), Gaps = 40/1235 (3%)

Query: 32   CPRCGYINGMVKKAVAVLGIIHDRSKVTESL---------QEFASAITHTKESKAAVNVA 82
            CP C  +NG V+K V ++ I+H++ K T  +           F  A+ + KE    +  A
Sbjct: 156  CPYCEDLNGFVRK-VGLMKIVHEKYKTTRKIVDPIISDFQSSFDVALENNKELSPLLPKA 214

Query: 83   TYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMD-GSQS 138
              +LNP+ VL +F+++ + D  +L  S     P  LI+  I  PP+ IRPSVI +  S S
Sbjct: 215  QEVLNPLRVLDIFQQIPEQDYPLLMFSPGMSHPHDLIMRRILAPPVCIRPSVISELASGS 274

Query: 139  NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQV 198
            NE+D+T +L  I+  N  +++           +  W+ LQ++ A YINS++ G+P +MQ 
Sbjct: 275  NEDDVTMKLTEIVFLNDVIRKHRSVGAKVQMIMEDWDFLQLQCALYINSEMSGIPLNMQP 334

Query: 199  ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
             +   GFVQRLKGKQGRFRGNLSGKRV+++GRTVISPDPNL+I +VA+PI +A++LTYPE
Sbjct: 335  KKGTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVAVPIHVAKVLTYPE 394

Query: 259  RVSDHNIEKLRQCIQNGPDKYPGARMIRYPD-GTARVLYGKFRNQLAVELKSGCIVDRHL 317
            RV+  N++ ++Q + NG D++PGA  I+  +  T R L    R  +A +LK G  V+RHL
Sbjct: 395  RVTQSNLKLMKQLVLNGADQHPGANFIQQRETNTKRFLKYGNRKLIAKQLKIGDTVERHL 454

Query: 318  EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
             DGDVVLFNRQPSLH++SIM H A + P RT RFNE VC PYNADFDGDEMN+H+PQTEE
Sbjct: 455  IDGDVVLFNRQPSLHKLSIMAHLATVRPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEE 514

Query: 378  ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
            A+ EAL LMGV+NNL TP+NGE L+A+ QDF+T ++L+T KD F DR+  + +C  +  G
Sbjct: 515  AKAEALTLMGVKNNLVTPRNGEPLIAAIQDFITGAYLLTYKDVFLDRSHIAQLCASILAG 574

Query: 438  MDR---VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
             D    ++LP PAI KP  LWTGKQ+FSVL+RP+  ++V +NL  + K Y++        
Sbjct: 575  KDTGVDIELPPPAIHKPCRLWTGKQVFSVLLRPNPKVKVRMNLRARGKQYTSG------- 627

Query: 495  EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                 E +C ND FV   NS+L+ G L KA LG+G+K+ ++ VLLRD+G    +  M R+
Sbjct: 628  -----EDLCVNDSFVVIHNSDLMCGALDKAVLGSGSKNSVFYVLLRDFGQQVAADAMWRV 682

Query: 555  AKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
            A++   ++ N GFSIGI DV P   L   K  L+S  Y  C   I E+ EGKLQ +PGC 
Sbjct: 683  ARICPFFLSNRGFSIGIGDVTPGHGLLQAKEDLLSTGYSKCEDYINEFREGKLQTQPGCS 742

Query: 615  AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
            A  TLEAVI   L+ IR+ AGKAC+  L   N+PL M+ CGSKGS INISQM+ACVGQQ+
Sbjct: 743  AEDTLEAVILKELSVIRDHAGKACLRELHKSNTPLTMAVCGSKGSFINISQMIACVGQQA 802

Query: 675  VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
            + G+R P+GF DRSLPHF R +K PAAKGFV NSF+SGL+ TEFFFH MGGREGLVDTAV
Sbjct: 803  ISGKRIPDGFEDRSLPHFKRHSKLPAAKGFVKNSFFSGLTPTEFFFHAMGGREGLVDTAV 862

Query: 735  KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFD 794
            KTA+TGYM RRL+K+LEDLS QYD +VR + G IVQF YG DG+DP +MEGK  +PL+F 
Sbjct: 863  KTAETGYMQRRLVKSLEDLSTQYDITVRTSTGDIVQFRYGGDGLDPTDMEGKD-KPLDFS 921

Query: 795  RLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDK 854
            R+   ++       +R L+  +  EI +  + +   E CS+ F      F E    K++ 
Sbjct: 922  RVFSHIQCNHVMREERPLTSSRAREIAKGIIESSEFEMCSKDFKTETSDFVENLAKKIE- 980

Query: 855  KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQ 914
              K     G    S    ++    +  TE QL++F+  C  +Y   R+E G+A+GAI AQ
Sbjct: 981  --KIHAQYGVVPHSITSNKIVDYVNRCTETQLKLFLSMCREKYLRARMEPGSAVGAICAQ 1038

Query: 915  SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAAR 974
            SIGEPGTQMTLKTFHFAGVASMNIT GVPRIKEIIN +++ISTPII+A+L+ + ++  AR
Sbjct: 1039 SIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASRKISTPIISAQLQDDRDQELAR 1098

Query: 975  VVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKI 1034
             VKGRIE+TLLG+V + I+ V       ++I LD E I+   L ++AD ++ +I  + K+
Sbjct: 1099 AVKGRIERTLLGEVTEYIEEVFLPDNCYLLIKLDTERIRLLKLEVDADTIQAAICSSRKL 1158

Query: 1035 KLKQQHIKVLDFRKLEIFPPVD-KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKE 1093
            +L Q  ++V     + ++P    KS +H+ +  L++ LP V++KG K V R +I   E++
Sbjct: 1159 RLNQSQVRVHSSAVICVYPTESAKSSLHYVMQQLRSDLPGVLIKGYKNVTRAIIHIDEEQ 1218

Query: 1094 KRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDE 1153
             R     G ++ Y+LLVEG  LQAV+   G+ G  T SN+  EV++ LGIEAAR  I++E
Sbjct: 1219 SR-----GGEEHYKLLVEGDDLQAVISTMGVKGNGTTSNNTIEVERVLGIEAARQTIMNE 1273

Query: 1154 INETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFN 1213
            I  TMK HGMSID RH+MLLA+LM F+GE+LGITR G+ KM +SVLMLASFE+TADHLF 
Sbjct: 1274 IIYTMKNHGMSIDVRHVMLLAELMAFKGEILGITRHGLAKMKESVLMLASFERTADHLFE 1333

Query: 1214 ASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            A+++GR D I+GVSECIIMG+PM +GTG+ K+  +
Sbjct: 1334 AALHGRKDPIDGVSECIIMGMPMNIGTGMFKLLHK 1368


>gi|344229980|gb|EGV61865.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Candida
            tenuis ATCC 10573]
          Length = 1453

 Score = 1176 bits (3043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/1348 (46%), Positives = 853/1348 (63%), Gaps = 123/1348 (9%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHD- 54
            +R P ++ LR+  ++KS+V +C     K  +C +C ++NG+VKKA      A L I+HD 
Sbjct: 127  LRRPYIDNLRRMKILKSVVDQCK----KQRRCFKCTHVNGVVKKAASGAGPAALKIVHDT 182

Query: 55   ----------RSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
                        +V +S  E    +T   E +         LNP+ VL LFK++T  +CE
Sbjct: 183  FRWVGKKPTPEKEVWDS--EIEQVLTRNPELEKFTKRMYEDLNPLKVLHLFKQITPDECE 240

Query: 105  VLYLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQE 160
            +  L      RPE  I   +  PP+ IRPSV+MD +QSNE+D+T +L  I+ T++ ++  
Sbjct: 241  LFGLDPSRGGRPETYIWRYLPAPPVCIRPSVMMD-AQSNEDDLTVKLTEIVWTSSLIKAG 299

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-------RPLSGFVQRLKGKQ 213
            + +  S    +  W+ LQ+ VA YINSD    P  M  A       +P+ GF QRLKGKQ
Sbjct: 300  IDKGISINNLMEQWDYLQLSVAMYINSDAAN-PALMPSAGSGSKSTKPIRGFCQRLKGKQ 358

Query: 214  GRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQ 273
            GRFRGNLSGKRV+++GRTVISPDPNLKI EVA+P R+A+ILTYPE+ + +N  KL++ I 
Sbjct: 359  GRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKILTYPEKCTRYNRIKLQKLIL 418

Query: 274  NGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
            +GPD +PGA  +++  + T R L    R ++A  L  G +V+RH+EDGDVVLFNRQPSLH
Sbjct: 419  SGPDVHPGANYVLKQNENTKRNLRFGDRVKIAKNLHIGDVVERHIEDGDVVLFNRQPSLH 478

Query: 333  RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
            R+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL
Sbjct: 479  RLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 538

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
             TPK+GE ++A+TQDF+T S+LIT KD+F++RA+ + + C M D   + DLP PAI+KPV
Sbjct: 539  LTPKSGEPIIAATQDFITGSYLITHKDSFFERASVNQLLCMMSDANLQFDLPPPAIIKPV 598

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFR 512
             LWTGKQ+FS+LI+P+    V +NL  K KTY          E      M PNDG+V  R
Sbjct: 599  SLWTGKQVFSLLIKPNKASNVVINLDAKAKTYIPP-------ERHFANEMSPNDGYVIIR 651

Query: 513  NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
             S+++SG + K+TLG+G K  ++  +LRDYG    +  MNR++KL AR++GN GFSIGI+
Sbjct: 652  GSQILSGVMDKSTLGDGKKHSVFYTILRDYGPTEAAEAMNRMSKLCARYLGNRGFSIGIN 711

Query: 573  DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
            DV P  +L +KK  ++ + Y  C+  I  YN GKL+ +PGC+  QTLEA I  +L+++RE
Sbjct: 712  DVTPGSDLKNKKELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVRE 771

Query: 633  DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
            + G+ C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF
Sbjct: 772  EVGEVCIKELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 831

Query: 693  PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
             + +K P +KGFV NSF+SGL+  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LED
Sbjct: 832  TKNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 891

Query: 753  LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYL 812
            LS QYDN+VRN+   IVQF YG DG+DP +MEG +  P+NF R             +  L
Sbjct: 892  LSSQYDNTVRNSSNGIVQFTYGGDGLDPFDMEGDA-RPVNFVRQWDHSFNITFSNREMGL 950

Query: 813  SPQQVSEIVEKQLAAY----------------------GKESCSEAFLNSLRKFFEGQQD 850
             P QV E VEK L                          +      F +S+R F + +  
Sbjct: 951  LPYQVMEEVEKVLQPLEDRLIRYDNLGHQIISNREEYIDQNDAEREFYHSIRSFVDKKAT 1010

Query: 851  KLDKKIK----------------FVED--IGWDDKSQILEEVTHKTSGITEKQLEVFIQT 892
             L K  +                FVED     +   QIL+        I+ K ++ F++ 
Sbjct: 1011 HLAKTRQSKHLKPNYTPPTDGEVFVEDNQDSLNAVDQILK--------ISAKSVDTFLKQ 1062

Query: 893  CFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGA 952
            C  +Y   +VE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +
Sbjct: 1063 CLYKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAS 1122

Query: 953  KRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            K ISTPII + L  +D+E AARVVKGRIEKTLL  VA  I+ V  + +A + + +D++TI
Sbjct: 1123 KAISTPIINSVLVNDDDEIAARVVKGRIEKTLLKDVAFHIQDVYKNNMAYLSVKIDLKTI 1182

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIH----------- 1061
            +   L +N D + ++IV  PK+K++  H+ +    ++ I   ++ SK+            
Sbjct: 1183 EKLQLELNIDSIAQAIVNAPKLKIQPAHVSITGSDRINILVTLNDSKVESLAKSMNVDYK 1242

Query: 1062 ---------FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEG 1112
                     F +  LK +LP + +KG+  + R VI  ++  K++           LLVEG
Sbjct: 1243 LSDASNVLFFRMQHLKRMLPEICIKGLPNISRAVINIRDDSKKE-----------LLVEG 1291

Query: 1113 TGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMML 1172
             GL+ VM  +G+ G KT +NH+ EV + LGIEAAR  II EI+ TM  HGMS+D RH+ L
Sbjct: 1292 YGLKEVMSTDGVVGTKTTTNHVLEVFEVLGIEAARSSIIGEIDYTMSKHGMSVDPRHIQL 1351

Query: 1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232
            L D+MT++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   ++D++EGVSECII+
Sbjct: 1352 LGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKNDKVEGVSECIIL 1411

Query: 1233 GIPMPLGTGILKIRQRDAVPPMLKYGAP 1260
            G  M +GTG  K+ +   V P   +  P
Sbjct: 1412 GQTMSIGTGAFKLVKTSNVEPQALHQKP 1439


>gi|19112298|ref|NP_595506.1| DNA-directed RNA polymerase III complex large subunit Rpc1
            (predicted) [Schizosaccharomyces pombe 972h-]
 gi|9297042|sp|O94666.1|RPC1_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit rpc1; Short=RNA
            polymerase III subunit C1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit; AltName: Full=RPC158
 gi|4467280|emb|CAB37604.1| DNA-directed RNA polymerase III complex large subunit Rpc1
            (predicted) [Schizosaccharomyces pombe]
 gi|76782169|gb|ABA54855.1| RNA polymerase III largest subunit Rpc1 [Schizosaccharomyces pombe]
          Length = 1405

 Score = 1176 bits (3041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/1282 (48%), Positives = 843/1282 (65%), Gaps = 62/1282 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            +R P ++ LR++ + K I   C  M     +C +C  + G+VKKA   L IIH+R +   
Sbjct: 126  LRRPGIDNLRRSQICKRINDHCKKMR----RCSKCDAMQGVVKKA-GPLKIIHERFRYVR 180

Query: 61   SLQE--------FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
              Q+        F  A+    E K  ++ A   LNP+ VL LFK++T  DCE+L +    
Sbjct: 181  KSQDDEENFRHSFDEALKTIPELKMHLSKAHDDLNPLKVLNLFKQITPVDCELLGMDPEH 240

Query: 111  -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE L+   +  PP+ IRPSV  +G+ + E+D+T ++  II T++ ++  L +      
Sbjct: 241  GRPENLLWRYVPAPPVCIRPSVAQEGA-TTEDDLTVKITEIIWTSSLIRAALSKGTPISN 299

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  WE +Q+ +A YINS++ G+  S   ++P+ GF QRLKGKQGRFRGNLSGKRV+++G
Sbjct: 300  LMEQWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 359

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYP 288
            RTVISPDPNL+I +VA+P R+A+ILT+PERV+  N + L+ CI+NGPD +PGA  +I   
Sbjct: 360  RTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVIDRE 419

Query: 289  DGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 348
             G  R L    RN++A +LK G IV+RHL D DVVLFNRQPSLH++SIM H  ++ PWRT
Sbjct: 420  SGFKRFLRFGNRNRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHLVKVRPWRT 479

Query: 349  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDF 408
            LRFNE VC PYNADFDGDEMN+HVPQTEEA+TEAL LMG++NNL +P+NGE ++A+TQDF
Sbjct: 480  LRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGEPIIAATQDF 539

Query: 409  LTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
            +T+++L++ KDTF DR + S +CCYM D    +DLP PAI+KP  LWTGKQ+F+VL++P+
Sbjct: 540  ITAAYLLSLKDTFLDRKSISNICCYMMDASTHIDLPPPAIIKPRCLWTGKQVFTVLMKPN 599

Query: 469  ANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGN 528
               +V VNL  K +++S   I+++  E      MCP DG++  RNSE+I+G + K+ +G+
Sbjct: 600  RFSKVLVNLDAKTRSFSR--IKSKTPE------MCPKDGYLMIRNSEIIAGVVDKSVVGD 651

Query: 529  GNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLI 588
            G KD L+ V+LRDYGA   +  + RL+K+ AR++GN GFSIGI+DVQP K LS +K  L+
Sbjct: 652  GKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIEDVQPGKSLSSQKEILV 711

Query: 589  SENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSP 648
            ++ Y   +  I +Y +G L+ +PG D   TLEA I+  L+++R+D G+ CM  L   NSP
Sbjct: 712  NKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISSTLSKVRDDVGEICMDELGPANSP 771

Query: 649  LIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANS 708
            LIM+ CGSKGS IN+SQMVACVGQQ + G+R P+GF DRSLPHF + +K P AKGFV+NS
Sbjct: 772  LIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHFHKNSKHPLAKGFVSNS 831

Query: 709  FYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCI 768
            FYSGL+ TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS  YD +VR++   +
Sbjct: 832  FYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAYDGTVRSSNSDV 891

Query: 769  VQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQL-AA 827
            VQF+YGDDG+DP  MEG  G+ + F R  +             + P ++ + V + L   
Sbjct: 892  VQFVYGDDGLDPTYMEG-DGQAVEFKRTWIHSVNLNYDRHDSAMLPYEIIDYVNRALDDP 950

Query: 828  YGKESCSEAFLNSLRKFFEGQQDKLDKKIK-------FVEDIGWDDKSQI----LEEVTH 876
                +C+  F+ ++R F      K    ++        +E+   DD   +       V  
Sbjct: 951  KFLTNCNRDFIETIRTFVIENIAKYLASVRERRDLAPMLEEPDMDDLDDMEGDEFAPVAK 1010

Query: 877  KTS-----GITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 931
            + S      +TEKQL  F+  C+ +Y   +VE GTA+GAIGAQSIGEPGTQMTLKTFHFA
Sbjct: 1011 RKSVENIIRVTEKQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFA 1070

Query: 932  GVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKS 991
            GVA+   T GVPRIKEIIN AK ISTPIIT +L  + +E +ARVVKGRIEKT L  V   
Sbjct: 1071 GVAAQT-TLGVPRIKEIINAAKTISTPIITGQLINDRDERSARVVKGRIEKTYLKDVTSY 1129

Query: 992  IKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLD-FRKLE 1050
            I+ V       + I ++ +TI    L I    +  +I  TPK+K+  Q + V +  +++ 
Sbjct: 1130 IEEVYGPVTTYLSIQVNFDTISKLQLDITLADIAAAIWNTPKLKIPSQQVTVNNTLQQIH 1189

Query: 1051 IFPPVD----KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKY 1106
            +    D    ++++++ L + K VLP V+V GI T+ R VI            N E  K 
Sbjct: 1190 VHTSSDGKSSETEVYYRLQTYKRVLPDVVVAGIPTINRSVI------------NQESGKI 1237

Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L +EGTGLQAVM  EGI G KT +NH+ E++  LGIEAAR  II EI  TM  HG+++D
Sbjct: 1238 ELFMEGTGLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVD 1297

Query: 1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
             RH+MLL D+MT +GEVLGITRFG+ KM  SVL LASFEKT DHLFNA+     D IEG+
Sbjct: 1298 PRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLALASFEKTTDHLFNAAARFAKDSIEGI 1357

Query: 1227 SECIIMGIPMPLGTGILKIRQR 1248
            SECI++G   P+GT + ++ +R
Sbjct: 1358 SECIVLGKLAPIGTNVFQLIRR 1379


>gi|402226085|gb|EJU06145.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731 SS1]
          Length = 1455

 Score = 1175 bits (3039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 634/1311 (48%), Positives = 851/1311 (64%), Gaps = 95/1311 (7%)

Query: 4    PKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD--RSKVTES 61
            P +E L++    K++  +C     K   CP C   NG+VKKA   + I+H+  RSK TE 
Sbjct: 129  PGLENLQRQATFKAVNTQCR----KVTYCPYCMSTNGIVKKAKKDIKIVHEKFRSKKTED 184

Query: 62   -----LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPE 113
                  + F  AI + K+    +  A   ++P+ VL LF+ +TD DCE+L +     RPE
Sbjct: 185  ERLKWREGFNKAIEYQKDLAPHIAKAVEDMHPLRVLTLFENITDEDCELLGMHPEHGRPE 244

Query: 114  KLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAG 173
            + I   I+VPP+AIRPSV  DG+ SNE+D+T +L  I+  NA +++ L + N+    +  
Sbjct: 245  QFIWHYISVPPVAIRPSVQQDGA-SNEDDLTVKLTEIVFCNALIREGLRKGNATSNIMEN 303

Query: 174  WETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVI 233
            W+ LQ  VA YINS+   +  +  V +P+ GF QRLKGKQGRFRGNLSGKRV+++GRTVI
Sbjct: 304  WDFLQAGVALYINSEQPNLSPAY-VQKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVI 362

Query: 234  SPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIR------- 286
            SPDPNL+I EVAIP R+A  LTYP RV+++NIE LRQ ++NGP ++PGA  ++       
Sbjct: 363  SPDPNLRIDEVAIPKRVAVKLTYPARVNEYNIESLRQAVRNGPLEWPGANFVQSGAPGSF 422

Query: 287  -YPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
                G  R L    R ++A  L+ G +V+RHL DGDV+LFNRQPSLH++SIMCHR ++ P
Sbjct: 423  GLGGGIKRFLMYANRFEVADRLQVGDVVERHLIDGDVILFNRQPSLHKLSIMCHRVKVRP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
            WRT R NE VC PY ADFDGDEMN+HVPQTEEARTEAL LM V+ NL TP+NGE ++A+T
Sbjct: 483  WRTFRLNECVCGPYGADFDGDEMNIHVPQTEEARTEALELMSVKKNLVTPRNGEPVIAAT 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLI 465
            QDF+T+++L++ +DTFYDR AF+ +C YM D ++ +DLP P I +P  LWTGKQ+F+VL+
Sbjct: 543  QDFVTAAYLLSNRDTFYDRRAFTQICTYMADALEDIDLPPPTIWRPECLWTGKQIFNVLM 602

Query: 466  RPHANMRVYVNL--------------------TVK-----EKTYSNKLIRTEGDEEIRIE 500
            RP++  RV VN+                    T+K     +  +S   +  + +E  +  
Sbjct: 603  RPNSKSRVLVNVESPCNRGEKPTARYYPLSLRTLKPGRSGDPQFSFAELERQAEEAEKTG 662

Query: 501  TM----------------CPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA 544
             M                 PNDG++   NSE++ G + KAT+G+G K  ++  +LRD+G 
Sbjct: 663  KMKDDPYADFCQPLPMDLSPNDGWLVIVNSEIMCGVMDKATVGSGKKKSVFGAMLRDFGP 722

Query: 545  HATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNE 604
             A +  MNRLAKL  RW+ N GFS+GI DV P  EL  +K K++ + Y+ C   I++   
Sbjct: 723  DAAAAGMNRLAKLCGRWLSNFGFSLGISDVTPGAELRARKEKMVVKAYDDCTELIQQAKL 782

Query: 605  GKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINIS 664
            GKL  KPGCD  QTLEA I+ IL+++RE  G  CM  L   N+P +MS CGSKGS +N+S
Sbjct: 783  GKLANKPGCDQDQTLEASISSILSKVRESVGDICMKELSIHNAPRLMSICGSKGSVLNVS 842

Query: 665  QMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMG 724
            QM+ACVGQQ +GG+R P+GF +RSLPHFP+K++EP +KGFV+NSFY+GL  TEF FH + 
Sbjct: 843  QMIACVGQQIIGGKRVPDGFQERSLPHFPKKSREPPSKGFVSNSFYTGLRPTEFLFHAIS 902

Query: 725  GREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
            GREGLVDTAVKTA+TGYM RRL+KALEDL   YD SVR + G IVQF +GDDG+DP  +E
Sbjct: 903  GREGLVDTAVKTAETGYMQRRLMKALEDLVTHYDTSVRTSSGGIVQFRFGDDGLDPGCLE 962

Query: 785  GKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG-KESCSEAFLNSLRK 843
            G++ +P++FDR  M   A     G R L P ++ ++  + L     K  CS  +L+SLR 
Sbjct: 963  GQA-QPVDFDRAWMHAGAITARDG-RALLPFEIMDLTNEILQRRKFKTECSTQYLDSLRA 1020

Query: 844  FFEG---------QQDKLDKKIKFVE--------DIGWDDKSQILEEVTHKTSGITEKQL 886
            + +          Q+ K+   +   +         +G  +K Q   E   K   IT   +
Sbjct: 1021 YIQAIARHLGNVRQEYKMYDAVDRDDDWDADTDLSLGAGEKEQQALENRIK---ITSAHV 1077

Query: 887  EVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIK 946
            E F+ TC+++Y   ++E G+ +GA+GAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIK
Sbjct: 1078 ESFLNTCWAKYVKSKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1137

Query: 947  EIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIA 1006
            EIIN AK ISTPII+A+L    NE AAR+VKGR+EKT LG VA  I+         I + 
Sbjct: 1138 EIINAAKVISTPIISAKLVERKNETAARIVKGRLEKTYLGDVASVIEEAWAGEYTYIGVH 1197

Query: 1007 LDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRK--LEIFPPVDKSKIHFEL 1064
            LDM+ I+   L +  + VK +IV + K+K+K  +I V D RK  L+IF    + K ++EL
Sbjct: 1198 LDMDAIRKLQLELTIEDVKRAIVNSSKVKVKDGNITV-DSRKNRLKIFFDSGEFK-YYEL 1255

Query: 1065 YSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGI 1124
             + K VL  ++VKG   ++R VI + EK+K    + GE +   LLVEG GL  VM  EG+
Sbjct: 1256 RATKRVLADIVVKGSSQIQRAVINKIEKDKSPRGKPGENE---LLVEGYGLLEVMTTEGV 1312

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
             G +T  NH+ EV + LGIEAAR  II EI  TM+ HGM+ID RH+MLL D+MT++GEVL
Sbjct: 1313 VGEETTGNHVIEVGKVLGIEAARSTIIHEIQYTMENHGMNIDPRHVMLLGDVMTYKGEVL 1372

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIP 1235
            GITRFG+ KM  SVLMLASFEKT DHLF+A+  G+ D I GVSE IIMG P
Sbjct: 1373 GITRFGVAKMKDSVLMLASFEKTTDHLFDAAAYGKSDAILGVSESIIMGNP 1423


>gi|323457244|gb|EGB13110.1| hypothetical protein AURANDRAFT_35850 [Aureococcus anophagefferens]
          Length = 1398

 Score = 1174 bits (3038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1316 (47%), Positives = 842/1316 (63%), Gaps = 102/1316 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKK--AVAVLGIIHDR--- 55
            MR+P+ +ALRK  L K +V +C      A KCP CG  NG V+K      L + H++   
Sbjct: 101  MRDPRADALRKQALYKRVVDRCKA----ASKCPYCGARNGPVRKVAGAGALKLSHEKWRG 156

Query: 56   ------------SKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDC 103
                        S   ESL+   SA+     S  A      +L+PV+V  + ++++D DC
Sbjct: 157  VKREDLLDDDEFSAYAESLE---SALGAVPTSATATKAPPTVLSPVDVRAILEKISDDDC 213

Query: 104  EVLYLSER---PEKLIITNIAVPPIAIRPSVIMD---GSQSNENDITERLKRIIQTNASL 157
            ++L++  R   PE L++  + VPP  IRPSV +D   G  SNE+D+T +L+ II  N++L
Sbjct: 214  DLLWIDPRVGRPENLVLKTLLVPPTPIRPSVAVDSPGGGGSNEDDLTIKLQEIIDVNSAL 273

Query: 158  QQELVEANSAFKSLAGWETLQVEVAQYINSDVRGV-PFSMQVARPLSGFVQRLKGKQGRF 216
            +Q + +  S    + GW  LQV+VA Y+N +V G+ P +   A+P+ G  QRLKGK GRF
Sbjct: 274  RQAIRKGGSMKMIVEGWNFLQVQVALYLNGEVPGLQPRNAPAAKPIRGLCQRLKGKSGRF 333

Query: 217  RGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGP 276
            RGNLSGKRV+++ RTVISPDPNL++ +V +P  +A+I+TYPE+V+  N+EKL++ +  G 
Sbjct: 334  RGNLSGKRVDFSARTVISPDPNLRVDQVGVPQEVAKIMTYPEKVNALNLEKLQKLVVAGQ 393

Query: 277  DKYPGARMIRY-----------PDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLF 325
             ++PGA  +             P     +LYG  R ++A EL+ G +V+RH++DGDVVLF
Sbjct: 394  KQWPGANYVEIANHDDPGAGDRPPFKKSLLYGD-RARIAKELRVGDVVERHMQDGDVVLF 452

Query: 326  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
            NRQPSLH++SIM H  ++MPWRT RFNE VC PYNADFDGDEMNMH+PQTEEAR EA  L
Sbjct: 453  NRQPSLHKLSIMSHEVKVMPWRTFRFNECVCAPYNADFDGDEMNMHLPQTEEARAEASAL 512

Query: 386  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPT 445
            M V  N+CTP+NGE LVA+TQDF+T+SFL+T++D F+DR AF  +  Y+GD ++RVD+P 
Sbjct: 513  MNVATNICTPRNGEPLVAATQDFVTASFLVTQRDVFFDRDAFCALAAYVGDALERVDVPP 572

Query: 446  PAILKPVELWTGKQLFSVLIRP-------HANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            PAILKPV LWTGKQLFS+++RP       +      V+    E+ Y+             
Sbjct: 573  PAILKPVRLWTGKQLFSLIVRPTVAAKPENGGAWPCVSFECAERNYTGS----------G 622

Query: 499  IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
            IETMCP DG+V FR S L+ G + K T+G+G+K GL   L R++G  A +  MNRLAKLS
Sbjct: 623  IETMCPMDGYVLFRRSSLLCGNIAKKTVGDGSKKGLVYELYREHGPAAAATFMNRLAKLS 682

Query: 559  ARWIGNH-GFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
            AR++G H GFSIGIDDV P   +   K +L+ E +     KI+ Y  G L L+PGCDA Q
Sbjct: 683  ARYLGYHKGFSIGIDDVTPSDAVLALKAQLLEEGHAEARRKIEAYESGSLALQPGCDALQ 742

Query: 618  TLEAVITDILNRIREDAGKACMG-SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
            +LEA +T +L ++RE AGK  M   LP  NSP IM++CGSKGS IN+SQM+AC+GQQ+V 
Sbjct: 743  SLEAELTGLLGKVREQAGKNLMTRDLPRSNSPRIMAECGSKGSAINVSQMIACLGQQAVD 802

Query: 677  GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
            G+R  NGF+ R+LPHF      P A+GFVANSFYSGL+ATEFFFHTMGGREGLVDTAVKT
Sbjct: 803  GKRIQNGFVQRTLPHFEVGELSPGARGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKT 862

Query: 737  ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
            A TGYM+RRL+KALEDLS+ YD +VRN+   IVQF YGDDG+DP  ME     P++F RL
Sbjct: 863  AQTGYMARRLMKALEDLSVGYDGTVRNSEKNIVQFTYGDDGLDPVKMETGDSMPVDFGRL 922

Query: 797  LMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAF--LNSLRKFFEG------- 847
            L +V+        R  +P+ +       +A       +  F  L  L   F G       
Sbjct: 923  LHRVRHDDAALSSR--APRDLDAAAVAAVAEACGAGDAGPFGRLGPLAAKFRGDAAGFLR 980

Query: 848  --QQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAG 905
               +   D++++  +  G    +++ ++V      +++  L+ F      +Y    VE G
Sbjct: 981  DLSERMADRELQMKDHCGDAALARLFDDVA-----LSQGDLDRFQAGALDKYTRGVVEPG 1035

Query: 906  TAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELE 965
             A+GAIGAQ I EPGTQMTLKTFHFAGVASMN+T GVPR+ EIIN +K ISTPIITA L+
Sbjct: 1036 EAVGAIGAQCISEPGTQMTLKTFHFAGVASMNVTLGVPRLTEIINASKNISTPIITAHLD 1095

Query: 966  CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVK 1025
               +  AARVVK R+EKT LG++ KS+K V   R   + + LD   I D HL ++A   +
Sbjct: 1096 NPSSTTAARVVKARLEKTTLGEICKSMKEVYGPRSCYVSVELDATLIADLHLDVDAAAAR 1155

Query: 1026 ESIVQT--------PKIK-LKQQHIKV-LDFRKLEIFPPVDKSKIHFELYSLKNVLPMVI 1075
            + ++Q         P I+ LK +H+ +  + R  ++   +   + +F + +LK+ LP ++
Sbjct: 1156 KRVLQAVMASGRAPPVIRALKNEHVLLNPNHRNRDM---LSDDRTYFAMQALKSALPSIV 1212

Query: 1076 VKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            V G+ ++ R V+ E         E      Y LLVEG GL  VMG  G+DG +T +NH+ 
Sbjct: 1213 VGGVSSINRAVVNE--------DEGSSPATYHLLVEGYGLADVMGTPGVDGRRTTTNHVA 1264

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E++  LGIEAAR  I +EI   M A+G+ ID RH+MLL+D+MTF+G VLGITRFG+ KM 
Sbjct: 1265 EIEAVLGIEAARSTIANEITYIMSAYGIGIDARHLMLLSDVMTFKGVVLGITRFGVSKMR 1324

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK-IRQRDA 1250
            +SVLMLASFE+T DHLF+A+ +GR D I GVSECIIMGIP+PLG G  K +R  DA
Sbjct: 1325 ESVLMLASFERTTDHLFDAAAHGRRDNIVGVSECIIMGIPIPLGCGSFKLLRDTDA 1380


>gi|388580014|gb|EIM20332.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Wallemia sebi CBS 633.66]
          Length = 1409

 Score = 1174 bits (3036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/1267 (49%), Positives = 838/1267 (66%), Gaps = 58/1267 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD--RSKV 58
             R P +E L++    K++   C     K + CP C   NG+VKK   +L I+H+  R+K 
Sbjct: 127  FRRPNLENLQRQTACKAVNTACR----KNLYCPYCQSTNGVVKK-TGLLKIVHEKFRAKK 181

Query: 59   TESLQE-----FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---E 110
            T+  Q+     F +AI  +KE    +N A   LNP+ VL LF R+++ DCE+L ++    
Sbjct: 182  TQGEQQEFVNTFNTAINMSKEIAPHLNKAQDDLNPLRVLDLFTRISNEDCELLGMNPKEA 241

Query: 111  RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
            RPE+ +   + VPP+ IRPSV  DG+ +NE+DIT +L  I+QT+  ++  +    S    
Sbjct: 242  RPEQYVWQYMHVPPVCIRPSVAQDGA-TNEDDITVKLGEIVQTSQIIKMGMSSGKSTTSQ 300

Query: 171  L-AGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
            L   WE LQ+  A YIN+++ GVP S +  +P+ GFVQRLKGKQGRFRGNLSGKRV+++G
Sbjct: 301  LMEQWELLQLACAMYINAEMPGVP-SDKATKPIRGFVQRLKGKQGRFRGNLSGKRVDFSG 359

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYP- 288
            RTVI PDPNL + EVA+P R+A++LTYPERV +HNIE LRQ ++NGPD +PGA  ++   
Sbjct: 360  RTVIGPDPNLSVNEVAVPQRIAKVLTYPERVFEHNIESLRQAVRNGPDVHPGANYVQNGG 419

Query: 289  -DGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
             +G  R L    R ++A  L+ G IV+RHL D D++LFNRQPSLHR+SIMCH  ++ PWR
Sbjct: 420  VNGFKRFLKFGNREEIANRLRIGDIVERHLRDRDLILFNRQPSLHRLSIMCHYVKVRPWR 479

Query: 348  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQD 407
            TLR NE  CNPYNADFDGDEMNMHVPQTEEARTEA  LMGV++N+ TP+NGE ++A+ QD
Sbjct: 480  TLRLNECACNPYNADFDGDEMNMHVPQTEEARTEAQELMGVKHNMVTPRNGEPIIAAIQD 539

Query: 408  FLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRP 467
            F+T+++L+++KD   DR  FS +  Y+      +DLP PAILKP  +WTGKQ+ S+L+RP
Sbjct: 540  FITAAYLLSKKDYLLDRQEFSQVVSYLDHANMHIDLPPPAILKPKRMWTGKQILSILMRP 599

Query: 468  HANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLG 527
            + +  V VNL  K +T            +  +  M  NDG++  RNS+++ G   KAT+G
Sbjct: 600  NKSSPVLVNLEAKNRT-------NHPPPKGMLPDMSSNDGYLVIRNSQIMCGHFDKATVG 652

Query: 528  NGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKL 587
            +G K+ ++ V+LRDYG       MNRLA++ ARW+ + GFS+GI DV P  +L  +K  L
Sbjct: 653  DGKKNSVFGVILRDYGPDEAVNAMNRLARVCARWLASVGFSLGISDVMPSMDLRKRKEVL 712

Query: 588  ISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNS 647
            + E Y  CN  I++   GKL+ +PGCD  QTLE++I+ IL+++R+  G +CM  L   N+
Sbjct: 713  VEEAYAHCNDLIEKAKYGKLENQPGCDQEQTLESLISGILSKVRDVVGASCMEELSRYNA 772

Query: 648  PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVAN 707
            PLIM+ CGSKGS IN+SQMVACVGQQ + G+R PNGF DRSLPHFP+KAK+P +KGFV N
Sbjct: 773  PLIMATCGSKGSVINVSQMVACVGQQIISGKRVPNGFQDRSLPHFPKKAKDPPSKGFVRN 832

Query: 708  SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
            SF+SGLS  EF FH + GREGLVDTAVKTA+TGYM RRL+KALEDLS  YD SVR + G 
Sbjct: 833  SFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLSAHYDRSVRTSSGI 892

Query: 768  IVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPA-GQRYLSPQQVSEIVEKQLA 826
            +VQFLYG DG+DP ++EG  G+P+ F R     KA    +  +R + P +++E V+K+L 
Sbjct: 893  VVQFLYGSDGLDPVSLEG-DGQPVEFLRSWKHTKAILDSSKHERGMLPFEITEHVDKELR 951

Query: 827  A--YGKESCSEAFLNSLRKFF--------------EGQQDKLDKKIKFVEDIGWDDKSQI 870
               + KE C+  +L+++R F                G  D L K  ++ E+   +  +  
Sbjct: 952  TKRWMKE-CTPHYLSTIRNFIFSSITKKLADLRDAHGMFDALTKSDEWDEETDLNMGAAD 1010

Query: 871  LEE-VTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFH 929
             E+ +    + +T  QL+ F+  C+ +Y   +VE GT +G IGAQSIGEPGTQMTLKTFH
Sbjct: 1011 FEKAIVDNKAKVTLPQLQEFLNICWQKYVKSKVEPGTTVGPIGAQSIGEPGTQMTLKTFH 1070

Query: 930  FAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVA 989
            FAGVASMN+T GVPRIKEIIN AK ISTPII+++L  + +E+AAR+VKGR+EKT LG +A
Sbjct: 1071 FAGVASMNVTLGVPRIKEIINAAKAISTPIISSKLYDDQSESAARIVKGRLEKTYLGDIA 1130

Query: 990  KSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKL 1049
              I+        ++ + +DM+ +Q   L +    +  +I +  K+K+K++ IK  ++ K 
Sbjct: 1131 SHIEESYRGDCNAVSVFVDMDAVQKLQLELKLSDIATAIAKDKKLKVKKEDIKE-NYTKN 1189

Query: 1050 EIFPPVDKSKIHFELY-SLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRL 1108
             I   V      F +   L+  L  V+V GI  + R +I   EK         E K+  L
Sbjct: 1190 RIRISVKLGPDAFHITRHLRRNLEHVVVAGIPGITRAIININEK---------ENKRKEL 1240

Query: 1109 LVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKR 1168
            LVEG GL  VM  EGI G +T SNH+ EVQ  LGIEAAR  II+EI+  M +HGM ID R
Sbjct: 1241 LVEGYGLLDVMTTEGIIGTRTSSNHVMEVQNVLGIEAARSSIINEIDNVMSSHGMGIDNR 1300

Query: 1169 HMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSE 1228
            H+ LL+D MTF+GEVLGITRFG+ KM  SVLMLASFEKT DHLFNA+ + + D IEGVSE
Sbjct: 1301 HIQLLSDSMTFKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFNAAFHAKRDAIEGVSE 1360

Query: 1229 CIIMGIP 1235
             IIMG P
Sbjct: 1361 SIIMGNP 1367


>gi|427788425|gb|JAA59664.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
          Length = 1390

 Score = 1172 bits (3033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1273 (49%), Positives = 831/1273 (65%), Gaps = 50/1273 (3%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P    L K  L K IV+ C   AS    CP CG +NG VKK   +L  +++R K   
Sbjct: 129  VQRPSTSFLTKKSLHKKIVEICRKQAS----CPFCGVVNGQVKKC-GLLKFVYERYKAHK 183

Query: 58   ----VTESLQE-FASAITHTKESKAAVN-VATYILNPVNVLFLFKRMTDTDCEVLYLSER 111
                V + LQ+ +  A ++  E  + +N V + ILNP+ V  L +R+ D D  +L ++ R
Sbjct: 184  KNEGVIKDLQDDYQEARSYNNEIDSVINKVTSDILNPLVVRDLLRRIPDEDVPLLLMNTR 243

Query: 112  ---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               PE L++T+I VPP+ IRPSV+    + +NE+D+T +L  II  N  LQ+        
Sbjct: 244  CGRPEDLVLTHIPVPPLCIRPSVVSALKAGTNEDDVTVKLTEIIFLNDVLQKHRTNGGKM 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A Y+NS+  G+P +MQ  +P  GFVQRLKGK GRFRGNLSGKRV++
Sbjct: 304  SMIMEDWDFLQLQCALYVNSETSGIPLNMQPKKPTRGFVQRLKGKHGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIR- 286
            +GRTVISPDPNL+I EV +P  +A+ILTYPERV+ HNIE +RQ I+NG D +PGA  +  
Sbjct: 364  SGRTVISPDPNLRIDEVGVPEHVAKILTYPERVTQHNIELMRQLIRNGCDVHPGANFLEC 423

Query: 287  YPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW 346
               G  R L    R QLA +L+ G +V+RHL+DGDVVLFNRQPSLH++SIM H A+++P 
Sbjct: 424  RGTGIKRYLRYGNREQLAQQLRLGDMVERHLKDGDVVLFNRQPSLHKLSIMAHVAKVLPH 483

Query: 347  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQ 406
            RT RFNE VC PYNADFDGDEMN+H+PQTEEAR EAL+LMG + NL TP+NGE L+A+ Q
Sbjct: 484  RTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALILMGTRANLVTPRNGEPLIAAIQ 543

Query: 407  DFLTSSFLITRKDTFYDR-AAFSLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFSV 463
            DF+T  +LIT+KD F DR  A  L  C +   D   +V+LP PAILKPV LWTGKQ+FS+
Sbjct: 544  DFITGGYLITQKDVFLDRIKACQLASCMLAGKDTNMKVELPPPAILKPVCLWTGKQIFSL 603

Query: 464  LIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGK 523
            ++RP  +  V   L  K K+Y      T G+E      MC ND +V  RNSEL+SG + K
Sbjct: 604  IMRPSRSSPVMACLRAKGKSY------TSGEE------MCVNDAYVLIRNSELLSGTMDK 651

Query: 524  ATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK 583
             T+G+G+K+ ++ +LLRDYG    +  M RL +L+A +I N GFSIGI DV P   L   
Sbjct: 652  GTMGSGSKNNIFYILLRDYGDQYAADAMWRLVRLTAYYIQNRGFSIGIGDVTPGAGLIKA 711

Query: 584  KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLP 643
            K  L+S  Y  C   I++   GKLQ +PGC+  +TLEAV    L+ +R+ AGKAC+  L 
Sbjct: 712  KQDLVSAGYARCEEYIQQLKCGKLQAQPGCNEEETLEAVCLKELSVVRDHAGKACLRELH 771

Query: 644  WRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKG 703
              NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R PNGF DRSLPHF +  + P A+G
Sbjct: 772  KTNSPLIMAVCGSKGSFINISQMIACVGQQAISGHRVPNGFEDRSLPHFEKHDRSPQARG 831

Query: 704  FVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRN 763
            FV +SFYSGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K+LEDL   YD SVRN
Sbjct: 832  FVEDSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCCHYDRSVRN 891

Query: 764  AGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEK 823
            + G +VQF YG DG+DPA+MEGK  +P++F R++   +A      +  L    + ++ ++
Sbjct: 892  SCGEVVQFCYGADGLDPASMEGKDDKPVDFGRVMEVTRARNTHRNEPPLDMDGILQLSKE 951

Query: 824  QLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITE 883
             L       C E+F N L  F       + +     +    D        V  + + +T 
Sbjct: 952  ILGGEDMSVCGESFRNDLEAFLTTYAKGVAETYTLYKVKERDIP------VLKQLNRLTA 1005

Query: 884  KQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVP 943
             QL  F  TC  +Y    +E  TA+GA+ AQSIGEP TQMTLKTFHFAGVASMNITQGVP
Sbjct: 1006 SQLRSFFDTCREKYLRSVMEPATAVGAVCAQSIGEPATQMTLKTFHFAGVASMNITQGVP 1065

Query: 944  RIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASI 1003
            RIKEIIN +K ISTPIITA L  + +   AR VKGRIEKTLLG+V++ ++ V       +
Sbjct: 1066 RIKEIINASKNISTPIITAALMNDTDAEYARRVKGRIEKTLLGEVSEYLEEVFLPDDCFV 1125

Query: 1004 VIALDMETIQDAHLCINADIVKESI-VQTPKIKLKQQHIKVLDFRKLEIFPPV-DKSKIH 1061
            ++ LD++ I+   L + AD ++ SI +   K+++K + IK +    L I P    K+ ++
Sbjct: 1126 LVKLDIDRIRLLQLEVTADTIRYSISLYKTKLRIKNEDIKAIGTSLLTIRPNASSKTSLY 1185

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L +L   LP +++KGI +  R VI           ++    +YRLLVEG GL+ V+  
Sbjct: 1186 YSLQNLMEQLPKIVIKGIPSSSRAVI--------HADDSLGGTRYRLLVEGDGLRDVIAT 1237

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G KT SN+  EV++TLGIEAAR  II EI  TM+ HG+S+D+RH+MLLADLMTFRG
Sbjct: 1238 YGVKGIKTSSNNTSEVEKTLGIEAARTTIIREIGVTMQNHGISVDRRHLMLLADLMTFRG 1297

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITR G+ +M +S LMLASFEKTADHLF+A+  G+ D I GVSE II+G+PM +GTG
Sbjct: 1298 EVLGITRHGLARMKESALMLASFEKTADHLFDAAYYGQTDEISGVSESIILGVPMAIGTG 1357

Query: 1242 ILKIRQRDAVPPM 1254
               +  +    P+
Sbjct: 1358 FFDLVHKVDWQPL 1370


>gi|68481275|ref|XP_715412.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
 gi|46437034|gb|EAK96387.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
          Length = 1448

 Score = 1172 bits (3032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 634/1321 (47%), Positives = 843/1321 (63%), Gaps = 103/1321 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHDR 55
            +R P ++ LR+  ++K I+++C     K  +C +C +ING+VKKA      A L I+HD 
Sbjct: 127  LRKPHIDNLRRMKIIKKIIEQCK----KQRRCLKCNHINGVVKKAASGAGPAALKIVHDT 182

Query: 56   SKVT---ESLQ------EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +     E+L+      E         E +         LNP+  L LFK++T  DCE+ 
Sbjct: 183  FRWIGKKETLEKTIWDEELDQVFIRNPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELF 242

Query: 107  YLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
             L      RPE  I   +  PP+ IRPSV+MD SQSNE+D+T +L  I+ T++ ++  +V
Sbjct: 243  GLDPAKGGRPEMYIWRYLPAPPVCIRPSVMMD-SQSNEDDLTVKLTEIVWTSSMIRAGIV 301

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM-----QVARPLSGFVQRLKGKQGRFR 217
            +  S    +  W+ LQ+ VA YINSD      S      + ++P+  F QRLKGKQGRFR
Sbjct: 302  KGISINNLMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFR 361

Query: 218  GNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPD 277
            GNLSGKRV+++GRTVISPDPNLKI EVA+P R+A++LTYPE+ + +N +KL++ + NGPD
Sbjct: 362  GNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPD 421

Query: 278  KYPGAR--MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMS 335
             +PGA   M +   G   + +G  R +LA  L+ G +V+RH+EDGDVVLFNRQPSLHR+S
Sbjct: 422  IHPGANYVMKQNEPGKRNLRFGD-RVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRLS 480

Query: 336  IMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTP 395
            I+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TP
Sbjct: 481  ILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTP 540

Query: 396  KNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELW 455
            K+GE ++A+TQDF+T S+LI+ KD+F+DRA    +   M D   + D+P P I KPV LW
Sbjct: 541  KSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTIFKPVMLW 600

Query: 456  TGKQLFSVLIRPHANMRVYVNLTVKEKTYS--NKLIRTEGDEEIRIETMCPNDGFVYFRN 513
            TGKQ+FS+LI+P+    V +NL  K KT+    K +  E         M PNDGFV  R 
Sbjct: 601  TGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGLPNE---------MSPNDGFVVIRG 651

Query: 514  SELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDD 573
            S+++SG + K+TLG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI+D
Sbjct: 652  SKILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGIND 711

Query: 574  VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRED 633
            V P  EL  KK  ++ + Y  C+  I  YN GKL+ +PGC+  QTLEA I  +L+++RE+
Sbjct: 712  VTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREE 771

Query: 634  AGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFP 693
             G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF 
Sbjct: 772  VGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFT 831

Query: 694  RKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDL 753
            + +K P +KGFV NSF+SGL+  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDL
Sbjct: 832  KNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDL 891

Query: 754  SIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLS 813
            S QYDN+VRN+   IVQF YG DG+DP +MEG + +P+NF+R                L 
Sbjct: 892  SSQYDNTVRNSSNGIVQFTYGGDGLDPYDMEGDA-KPVNFNRQWDHAYNLTYNVDDASLL 950

Query: 814  PQQVSEIVEKQLAAYGKESCSEAFL-NSL------------------RKFFEGQQDKLDK 854
            P Q+ E+V+  LA    +      L N+L                  R F++  +D L K
Sbjct: 951  PYQIEELVDSVLAPLENKLIRYDNLGNALNDKEKEQKIEYIDQNDGERDFYKSIRDFLTK 1010

Query: 855  K-IKF----------------VEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRY 897
            K I+                  ED    D+  +  +   + S I+ K ++ F++ C  +Y
Sbjct: 1011 KSIRLALLREERGLKAYFTAPTEDEIVMDEDAVKVKAIDQLSKISSKAVKTFLEQCLYKY 1070

Query: 898  RVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRIST 957
               RVE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K IST
Sbjct: 1071 SRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVIST 1130

Query: 958  PIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHL 1017
            PII A L  +D+E AARV KGRIEKTLL  VA  I+ V    LA + I +D+ETI    L
Sbjct: 1131 PIINAVLVNDDDEIAARVAKGRIEKTLLEDVAFYIEDVYKDNLAYLSIKIDLETIDKLQL 1190

Query: 1018 CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK-------------IHFEL 1064
             +N + +  +I   PK+K+ Q  + V    ++ +   + ++K             + F +
Sbjct: 1191 ELNLENIAVAIANAPKLKIAQSDVSVTGKDRINVLVNIKETKTESLRNTVDPKNALFFRM 1250

Query: 1065 YSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGI 1124
              LK  LP V +KG+  + R VI         +K++G+K+   LLVEG GL+ VM  EGI
Sbjct: 1251 QYLKRALPGVCIKGLPNIFRAVI--------NIKDDGKKE---LLVEGYGLKDVMNTEGI 1299

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
             G KT +NH+ EV Q LGIEAAR  II EI+ TM  HGMS+D RH+ LL D+MT++GEVL
Sbjct: 1300 VGTKTTTNHVLEVNQILGIEAARGSIIKEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVL 1359

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
            GITRFG+ KM  SVL LASFEKT DHLF+A+   ++D+IEGVSECII+G  M +GTG  K
Sbjct: 1360 GITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKIEGVSECIILGQTMSIGTGSFK 1419

Query: 1245 I 1245
            +
Sbjct: 1420 L 1420


>gi|403375855|gb|EJY87901.1| RNA polymerase III [Oxytricha trifallax]
          Length = 1365

 Score = 1172 bits (3032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1261 (49%), Positives = 841/1261 (66%), Gaps = 56/1261 (4%)

Query: 14   LMKSIVKKCSTMASKAVK-CPRCGYINGMVKKAVAV-LGIIHDRSK------VTESLQEF 65
            L K+IV +C     K VK CP CG+ NG VKK       IIHD+ K        + + EF
Sbjct: 95   LFKTIVAQC-----KKVKICPHCGFYNGTVKKMPNFPTRIIHDKYKGGKGADQDDLINEF 149

Query: 66   ASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAV 122
            +  ++     +A++  +   L+P  V  +F R+ D +  +  +  +   P  ++IT+I V
Sbjct: 150  SHVMSLNGNIEASLKSSYEELDPQKVYNIFSRIKDENVILFDMDHKLCKPIDMLITHIPV 209

Query: 123  PPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVA 182
            PP+ IRPSV +  + +NE+D+T ++  IIQ N  ++  + +  +  K +  W  LQ  +A
Sbjct: 210  PPVPIRPSVAVSANTTNEDDLTVKMAEIIQLNNLIKISIDQGLAPSKLIEDWLLLQYTIA 269

Query: 183  QYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKIT 242
            QY NS+  G+P ++   + +    QRLKGK GRFR NLSGKRV++TGRTVISPDPN  I 
Sbjct: 270  QYFNSETPGLPHNLLGNKQIRALSQRLKGKHGRFRQNLSGKRVDFTGRTVISPDPNCAID 329

Query: 243  EVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQ 302
            EV IPI +A+ LT+PERV+ +NI+KLR  ++ GPD +PGA  +   DG   +L    R +
Sbjct: 330  EVMIPIYIAKNLTFPERVNQYNIDKLRNLVKIGPDVHPGANYVESQDGNKVLLQYANRRK 389

Query: 303  LAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNAD 362
             A ELK G IV+RHLE+GDVVLFNRQPSLHR+SIM HRAR+MP RTLRFNE VC PYNAD
Sbjct: 390  AAEELKIGDIVERHLENGDVVLFNRQPSLHRVSIMAHRARVMPSRTLRFNECVCTPYNAD 449

Query: 363  FDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY 422
            FDGDEMN+H+PQ+EEAR EA +LM V+ NL  P++GE L+A TQDFLTSS+LIT+KD F 
Sbjct: 450  FDGDEMNIHLPQSEEARAEARILMDVKQNLLIPRSGEPLIAPTQDFLTSSYLITQKDKFL 509

Query: 423  DRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEK 482
            +R  F  +C Y  D  +++++P P I+KPVELWTGKQ+ +VL+RP+    VYVN  VKE+
Sbjct: 510  NRNEFMQICAYFWDANEKIEIPPPTIIKPVELWTGKQIINVLLRPNRKSYVYVNTVVKER 569

Query: 483  TYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDY 542
             YS              E MCPNDG+V F+NSELI G L K T+G+G+K GL+  L RD 
Sbjct: 570  NYSGVG-----------EHMCPNDGWVIFQNSELICGNLCKTTMGSGSKTGLFYSLQRDN 618

Query: 543  GAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEY 602
                 + CM R+AK SARWIG+HG SIGI DV P   L ++K KL+   Y  C+  I++Y
Sbjct: 619  SVEVAAQCMLRVAKFSARWIGSHGMSIGISDVTPFGLLIEEKQKLLEAGYVNCDKLIEQY 678

Query: 603  NEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPIN 662
             +GKL LK GC+  QTLE+ +   L++IR+ AG      LP  NSPLIM+ CGSKGS IN
Sbjct: 679  KQGKLVLKAGCNPEQTLESYLNGELSKIRDKAGDILKSKLPKYNSPLIMAICGSKGSNIN 738

Query: 663  ISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHT 722
            + QM+A VGQQ+V G+R PNGF DRSLPHF   +K PA+KGFV NSFYSGL+ATEFFFHT
Sbjct: 739  LCQMIALVGQQTVNGQRMPNGFFDRSLPHFEPYSKYPASKGFVGNSFYSGLTATEFFFHT 798

Query: 723  MGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPAN 782
            +GGREGLVDTAVKTA+TGYM RRL+KALEDLS++YD++VR +   I+QF YGDDG+DP  
Sbjct: 799  IGGREGLVDTAVKTAETGYMQRRLMKALEDLSVKYDDTVRTSTEHIIQFQYGDDGLDPMF 858

Query: 783  MEGKSGEPLNFDRLLMKV----KATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFL 838
            M+  S  P++  RL++ +    K T     +  L P Q+ +  +K       ++ S  F+
Sbjct: 859  MDDNS-LPVSLKRLMIMIKENTKQTAKVINEDILLPFQIDQFKDKIYEICPVKNISMKFI 917

Query: 839  NSLRKFFE-------------GQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQ 885
               ++F +             G +D L K+I   ++I  +   ++++++    + +T  Q
Sbjct: 918  EQFKEFLDTIINQVAKQRTDLGLKDGL-KQIPTEQEIKKERFDKVVQKLLRNFTFLTLSQ 976

Query: 886  LEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRI 945
            LE F    + +YR  +++ G A+GA+ AQSIGEPGTQMTLKTFHFAGVASMN+T GVPRI
Sbjct: 977  LEDFTNLVWLKYRRAQIQPGEAVGAVAAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRI 1036

Query: 946  KEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVI 1005
            KEIIN  K ISTPII+A L  + +  +AR+VKGRIEKT LG +AK IK V T R   + +
Sbjct: 1037 KEIINATKEISTPIISARLVNDVDLISARIVKGRIEKTKLGDIAKYIKEVYTPRGCYLEV 1096

Query: 1006 ALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP-PVDKSKIHFEL 1064
             LD++ I    L +    VK +I++TPKIK+K+  I+V+D R + I P    +  ++F +
Sbjct: 1097 KLDIDAITALKLELTIHDVKNAIIKTPKIKVKENKIEVIDHRVVHIQPHDTTRDNMYFSM 1156

Query: 1065 YSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGI 1124
              LKN+LP V VKGI TV R VI+++E+         ++ K+ LLVEG GL+ VM   GI
Sbjct: 1157 QQLKNMLPNVSVKGIPTVVRAVISKQEQ---------DQSKHHLLVEGYGLKQVMSTPGI 1207

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
            D   TKSNH+ E +Q LGIEAAR  II+EI  TM++HGM+ID RH+ LLAD+MTF+G+VL
Sbjct: 1208 DFRSTKSNHVIETEQVLGIEAARQTIINEIQYTMQSHGMNIDPRHIQLLADIMTFKGQVL 1267

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
            GITRFG+ KM  S LMLASFE T DHL++++V+ + D I GVSECIIMG  +P+GTG+ K
Sbjct: 1268 GITRFGVSKMKNSTLMLASFEMTTDHLYDSAVHCKKDEISGVSECIIMGNMIPIGTGLFK 1327

Query: 1245 I 1245
            +
Sbjct: 1328 V 1328


>gi|353234990|emb|CCA67009.1| probable RPO31-DNA-directed RNA polymerase III, 160 KD subunit
            [Piriformospora indica DSM 11827]
          Length = 1371

 Score = 1172 bits (3032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/1259 (50%), Positives = 831/1259 (66%), Gaps = 73/1259 (5%)

Query: 4    PKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR---SKVTE 60
            P +E L +  L K ++     ++ K   C  CG ING VKKA A L I+H+R    K+TE
Sbjct: 129  PTLENLARQSLCKQVL----AISRKVNTCQHCGAINGTVKKAAA-LKIVHERFRQKKLTE 183

Query: 61   SL----QEFASAITHTKESKAAVNV-ATYILNPVNVLFLFKRMTDTDCEVLYLS---ERP 112
                  Q F++AI    +   A+++     LNP+ VL LFKRMT  DCE++ +     RP
Sbjct: 184  EAEKWRQSFSNAIKVQNDLDRALSIKGAEELNPLKVLDLFKRMTAEDCELVGMKPSHSRP 243

Query: 113  EKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLA 172
            E  +   IAVPP+AIRPSV  DG+ SNE+D+T +L  I   N+ ++Q L ++ +  K + 
Sbjct: 244  EHYLWQYIAVPPVAIRPSVNQDGA-SNEDDLTTKLSEIAFGNSLIKQSLNKSTNTSKLME 302

Query: 173  GWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTV 232
             WE LQ  VA YINSD  G+  S   ++PL GF QRLKGKQGRFRGNLSGKRV+++GRTV
Sbjct: 303  LWEFLQHSVALYINSDAPGIQQSD--SKPLRGFCQRLKGKQGRFRGNLSGKRVDFSGRTV 360

Query: 233  ISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA 292
            ISPDPNL+I EVAIP ++ARILTYP +V+ HN+E+LRQ +  GPDK  GA  ++   GT+
Sbjct: 361  ISPDPNLRIDEVAIPEKVARILTYPAKVTVHNLEQLRQAVLRGPDKPGGANFVQ--SGTS 418

Query: 293  RVL-YGKFRNQLAV--ELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 349
                + K+ + L V  +L+ G IV+RHL DGD+VLFNRQPSLHR+SIMCHRA+I PWRT 
Sbjct: 419  GFKKFLKYADPLDVAKKLRIGDIVERHLIDGDIVLFNRQPSLHRLSIMCHRAKIRPWRTF 478

Query: 350  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFL 409
            R NE VC PYNADFDGDEMN+HVPQTEEARTEAL LM V+ NL TPKNGE ++A+TQDF+
Sbjct: 479  RLNECVCGPYNADFDGDEMNLHVPQTEEARTEALQLMSVKLNLVTPKNGEPVIAATQDFI 538

Query: 410  TSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHA 469
            T++FL++ KD FYDR  F+ +C YM D    +D+P P I KP +LWTGKQ+F VL+RP  
Sbjct: 539  TAAFLLSGKDRFYDRRQFTQICSYMADAQSHIDIPPPTIWKPKQLWTGKQVFGVLMRPSR 598

Query: 470  NMRVYVNLTVKEKTY-SNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGN 528
              R +VNL  + +TY + K  R  G   +    + PNDG++   NS+++ G + KAT+G+
Sbjct: 599  KSRSFVNLETRCQTYQAPKADRLHGFTPL--PDLSPNDGWLVIVNSQVMCGVMDKATVGS 656

Query: 529  GNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLI 588
            G K  ++ VLLRDYG    +  MNRLAKL ARW+ N G S+GI+DV P  +L  +K   +
Sbjct: 657  GKKKSIFGVLLRDYGPDEAANAMNRLAKLCARWLTNVGMSLGINDVIPGSDLRTQKEGKV 716

Query: 589  SENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSP 648
               Y+ C   I +   GKL  KPGC+  QTLEA+I+D+L+++R D G  CM  L   N+P
Sbjct: 717  EAAYQDCQELIAKAKLGKLDNKPGCNQEQTLEAMISDVLSKVRGDVGSICMQELSRHNAP 776

Query: 649  LIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANS 708
            LIM+ CGSKGS +N+SQMVACVGQQ + G R P+GF DRSLPHF +++K+P +KGFV NS
Sbjct: 777  LIMATCGSKGSTVNVSQMVACVGQQIIAGHRVPDGFQDRSLPHFHKRSKDPPSKGFVRNS 836

Query: 709  FYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCI 768
            F+SGLS TEF FH + GREGLVDTAVKTA+TGYM RRL+KA +DL+  YD SVRN+ G I
Sbjct: 837  FFSGLSPTEFVFHAISGREGLVDTAVKTAETGYMQRRLMKA-KDLTTHYDFSVRNSHGGI 895

Query: 769  VQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAA- 827
            VQF+YGDDG+DPA++EG++ +PL+ +R  M  +A     G R LSP ++  + ++ +   
Sbjct: 896  VQFMYGDDGLDPASLEGEA-QPLDLNRSWMHAEAVSGRHG-RSLSPAEIINLTDEFVKGD 953

Query: 828  -YGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSG------ 880
             + K+ CS  +  ++  F  G   +++   +            +L E      G      
Sbjct: 954  DFAKQ-CSVVYARAVTNFIRGICSRMEAIGRRHNLPKTPQDHTVLSESVLVYHGDYIAAE 1012

Query: 881  ----ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 936
                +T++ LE F+Q C  RY   +VE G+ +GA+GAQSIGEPGTQMTLKTFHFAGVASM
Sbjct: 1013 NKCKVTKQHLETFLQICKDRYSRAKVEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASM 1072

Query: 937  NITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVM 996
            N+T GVPRIKEIIN +K I+TPIIT +L  +D+E AAR+VKGR+EKT LG +A  I+   
Sbjct: 1073 NVTLGVPRIKEIINASKTINTPIITTKLVASDSERAARIVKGRLEKTYLGDIAAVIEEAW 1132

Query: 997  TSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD 1056
            +S    + I LD E IQ   L +  D VK +I+   K+KLK                   
Sbjct: 1133 SSEGVYLGIHLDYEAIQKLQLELTLDDVKWAIISARKLKLKD------------------ 1174

Query: 1057 KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQ 1116
             S   F +Y  + +       GI +V+R +I  KEK+  +    G K +  L+VEG GLQ
Sbjct: 1175 -SASGFSIYFARLI-------GIPSVQRAIINIKEKDDSR----GRKGEKELIVEGNGLQ 1222

Query: 1117 AVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADL 1176
             VM   GI G  T SNHI EV++ LGIEAAR  II+EI  TM  HGM ID RH+MLL D+
Sbjct: 1223 QVMTTPGIIGEHTISNHIIEVEKVLGIEAARRTIINEIEYTMSQHGMYIDPRHIMLLGDV 1282

Query: 1177 MTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIP 1235
            MT++G+VLGITRFG+ KM  SVLMLASFEKT DHLF+AS  G++D + GVSE II+G P
Sbjct: 1283 MTYKGQVLGITRFGVSKMKDSVLMLASFEKTTDHLFDASAFGKNDSVLGVSESIILGNP 1341


>gi|241955144|ref|XP_002420293.1| DNA-directed RNA polymerase III subunit, putative [Candida
            dubliniensis CD36]
 gi|223643634|emb|CAX42517.1| DNA-directed RNA polymerase III subunit, putative [Candida
            dubliniensis CD36]
          Length = 1448

 Score = 1172 bits (3031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/1321 (47%), Positives = 841/1321 (63%), Gaps = 103/1321 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHDR 55
            +R P ++ LR+  ++K I+++C     K  +C +C +ING+VKKA      A L I+HD 
Sbjct: 127  LRKPHIDNLRRMKIIKKIIEQCK----KQRRCLKCNHINGVVKKAASGAGPAALKIVHDT 182

Query: 56   SKVT---ESLQ------EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +     E+L+      E         E +         LNP+  L LFK++T  DCE+ 
Sbjct: 183  FRWIGKKETLEKTIWDEELDQVFIRNPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELF 242

Query: 107  YLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
             L      RPE  I   +  PP+ IRPSV+MD +QSNE+D+T +L  I+ T++ ++  +V
Sbjct: 243  GLDPAKGGRPEMYIWRYLPAPPVCIRPSVMMD-AQSNEDDLTVKLTEIVWTSSMIRAGIV 301

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM-----QVARPLSGFVQRLKGKQGRFR 217
            +  S    +  W+ LQ+ VA YINSD      S      + ++P+  F QRLKGKQGRFR
Sbjct: 302  KGISINNLMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFR 361

Query: 218  GNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPD 277
            GNLSGKRV+++GRTVISPDPNLKI EVA+P R+A++LTYPE+ + +N +KL++ I NGPD
Sbjct: 362  GNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLIVNGPD 421

Query: 278  KYPGAR--MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMS 335
             +PGA   M +   G   + +G  R +LA  L+ G IV+RH+EDGDVVLFNRQPSLHR+S
Sbjct: 422  IHPGANYVMKQNEPGKRNLRFGD-RVKLAKTLQIGDIVERHIEDGDVVLFNRQPSLHRLS 480

Query: 336  IMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTP 395
            I+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TP
Sbjct: 481  ILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTP 540

Query: 396  KNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELW 455
            K+GE ++A+TQDF+T S+LI+ KD+F+DRA    +   M D   + D+P P I KPV LW
Sbjct: 541  KSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTIFKPVMLW 600

Query: 456  TGKQLFSVLIRPHANMRVYVNLTVKEKTYS--NKLIRTEGDEEIRIETMCPNDGFVYFRN 513
            TGKQ+FS+LI+P+    V +NL  K KT+    K +  E         M PNDGFV  R 
Sbjct: 601  TGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGLPNE---------MSPNDGFVVIRG 651

Query: 514  SELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDD 573
            S+++SG + K+TLG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI+D
Sbjct: 652  SKILSGLMDKSTLGDGKKHSVFYTILRDYGPEEAAAAMNRMAKLCARFLGNRGFSIGIND 711

Query: 574  VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRED 633
            V P  EL  KK  ++ + Y  C+  I  YN GKL+ +PGC+  QTLEA I  +L+++RE+
Sbjct: 712  VTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREE 771

Query: 634  AGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFP 693
             G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF 
Sbjct: 772  VGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFT 831

Query: 694  RKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDL 753
            + +K P +KGFV NSF+SGL+  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDL
Sbjct: 832  KNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDL 891

Query: 754  SIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLS 813
            S QYDN+VRN+   IVQF YG DG+DP +MEG + +P+NF+R                L 
Sbjct: 892  SSQYDNTVRNSSNGIVQFTYGGDGLDPYDMEGDA-KPVNFNRQWDHAYNLTYNVDDVSLL 950

Query: 814  PQQVSEIVEKQLAA-------------------------YGKESCSE-AFLNSLRKFFEG 847
            P Q+ E+V+  LA                          Y  ++  E  F  S+R F   
Sbjct: 951  PYQIEELVDSILAPLENKLIRYDNLGNALNDKEKEEKIEYIDQNDGERDFYKSIRDFITK 1010

Query: 848  QQDKLDK-------KIKFV---EDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRY 897
            +  +L +       K  F    ED    D+ ++      + S I+   ++ F++ C  +Y
Sbjct: 1011 KSTRLARLREERGLKAYFTAPNEDEIVMDEDRVTSNAIDQLSKISSNAVKTFLEQCLYKY 1070

Query: 898  RVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRIST 957
               RVE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K IST
Sbjct: 1071 SRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVIST 1130

Query: 958  PIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHL 1017
            PII A L  +D+E AARV KGRIEKTLL  VA  I+ V    LA + I +D+ETI    L
Sbjct: 1131 PIINAVLVNDDDEIAARVAKGRIEKTLLEDVAFYIEDVYKDNLAYLSIKVDLETIDKLQL 1190

Query: 1018 CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK-------------IHFEL 1064
             +N + +  +I   PK+K+ Q  + V    ++ +   + ++K             + F +
Sbjct: 1191 ELNLENIAVAIANAPKLKISQSDVSVTGKDRINVLVSIKETKTESLRNTVDPKNALFFRM 1250

Query: 1065 YSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGI 1124
              LK  LP V +KG+  + R VI         +K++G+K+   LLVEG GL+ VM  EGI
Sbjct: 1251 QHLKRALPGVCIKGLPNIFRAVI--------NIKDDGKKE---LLVEGYGLKDVMNTEGI 1299

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
             G KT +NH+ EV Q LGIEAAR  II EI+ TM  HGMS+D RH+ LL D+MT++GEVL
Sbjct: 1300 VGTKTTTNHVLEVNQILGIEAARGSIIKEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVL 1359

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
            GITRFG+ KM  SVL LASFEKT DHLF+A+   ++D+IEGVSECII+G  M +GTG  K
Sbjct: 1360 GITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKIEGVSECIILGQTMSIGTGSFK 1419

Query: 1245 I 1245
            +
Sbjct: 1420 L 1420


>gi|68481134|ref|XP_715482.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
 gi|46437106|gb|EAK96458.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
          Length = 1448

 Score = 1171 bits (3030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 634/1321 (47%), Positives = 843/1321 (63%), Gaps = 103/1321 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHDR 55
            +R P ++ LR+  ++K I+++C     K  +C +C +ING+VKKA      A L I+HD 
Sbjct: 127  LRKPHIDNLRRMKIIKKIIEQCK----KQRRCLKCNHINGVVKKAASGAGPAALKIVHDT 182

Query: 56   SKVT---ESLQ------EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +     E+L+      E         E +         LNP+  L LFK++T  DCE+ 
Sbjct: 183  FRWIGKKETLEKTIWDEELDQVFIRNPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELF 242

Query: 107  YLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
             L      RPE  I   +  PP+ IRPSV+MD SQSNE+D+T +L  I+ T++ ++  +V
Sbjct: 243  GLDPAKGGRPEMYIWRYLPAPPVCIRPSVMMD-SQSNEDDLTVKLTEIVWTSSMIRAGIV 301

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM-----QVARPLSGFVQRLKGKQGRFR 217
            +  S    +  W+ LQ+ VA YINSD      S      + ++P+  F QRLKGKQGRFR
Sbjct: 302  KGISINNLMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFR 361

Query: 218  GNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPD 277
            GNLSGKRV+++GRTVISPDPNLKI EVA+P R+A++LTYPE+ + +N +KL++ + NGPD
Sbjct: 362  GNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPD 421

Query: 278  KYPGAR--MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMS 335
             +PGA   M +   G   + +G  R +LA  L+ G +V+RH+EDGDVVLFNRQPSLHR+S
Sbjct: 422  IHPGANYVMKQNEPGKRNLRFGD-RVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRLS 480

Query: 336  IMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTP 395
            I+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TP
Sbjct: 481  ILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTP 540

Query: 396  KNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELW 455
            K+GE ++A+TQDF+T S+LI+ KD+F+DRA    +   M D   + D+P P I KPV LW
Sbjct: 541  KSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTIFKPVMLW 600

Query: 456  TGKQLFSVLIRPHANMRVYVNLTVKEKTYS--NKLIRTEGDEEIRIETMCPNDGFVYFRN 513
            TGKQ+FS+LI+P+    V +NL  K KT+    K +  E         M PNDGFV  R 
Sbjct: 601  TGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGLPNE---------MSPNDGFVVIRG 651

Query: 514  SELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDD 573
            S+++SG + K+TLG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI+D
Sbjct: 652  SKILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGIND 711

Query: 574  VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRED 633
            V P  EL  KK  ++ + Y  C+  I  YN GKL+ +PGC+  QTLEA I  +L+++RE+
Sbjct: 712  VTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREE 771

Query: 634  AGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFP 693
             G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF 
Sbjct: 772  VGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFT 831

Query: 694  RKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDL 753
            + +K P +KGFV NSF+SGL+  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDL
Sbjct: 832  KNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDL 891

Query: 754  SIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLS 813
            S QYDN+VRN+   IVQF YG DG+DP +MEG + +P+NF+R                L 
Sbjct: 892  SSQYDNTVRNSSNGIVQFTYGGDGLDPYDMEGDA-KPVNFNRQWDHAYNLTYNVDDASLL 950

Query: 814  PQQVSEIVEKQLAAYGKESCSEAFL-NSL------------------RKFFEGQQDKLDK 854
            P Q+ E+V+  LA    +      L N+L                  R F++  +D L K
Sbjct: 951  PYQIEELVDSVLAPLENKLIRYDNLGNALNDKEKEQKIEYIDQNDGERDFYKSIRDFLTK 1010

Query: 855  K-IKF----------------VEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRY 897
            K I+                  ED    D+  +  +   + S I+ K ++ F++ C  +Y
Sbjct: 1011 KSIRLALLREERGLKAYFTAPTEDEIVMDEDAVKVKAIDQLSKISSKAVKTFLEQCLYKY 1070

Query: 898  RVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRIST 957
               RVE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K IST
Sbjct: 1071 SRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVIST 1130

Query: 958  PIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHL 1017
            PII A L  +D+E AARV KGRIEKTLL  VA  I+ V    LA + I +D+ETI    L
Sbjct: 1131 PIINAVLVNDDDEIAARVAKGRIEKTLLEDVAFYIEDVYKDNLAYLSIKIDLETIDKLQL 1190

Query: 1018 CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK-------------IHFEL 1064
             +N + +  +I   PK+K+ Q  + V    ++ +   + ++K             + F +
Sbjct: 1191 ELNLENIAVAIANAPKLKIAQSDVSVTGKDRINVLVNIKETKTESLRNTVDPKNALFFRM 1250

Query: 1065 YSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGI 1124
              LK  LP V +KG+  + R VI         +K++G+K+   LLVEG GL+ VM  EGI
Sbjct: 1251 QYLKRALPGVCIKGLPNIFRAVI--------NIKDDGKKE---LLVEGYGLKDVMNTEGI 1299

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
             G KT +NH+ EV Q LGIEAAR  II EI+ TM  HGMS+D RH+ LL D+MT++GEVL
Sbjct: 1300 VGTKTTTNHVLEVNQILGIEAARGSIIKEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVL 1359

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
            GITRFG+ KM  SVL LASFEKT DHLF+A+   ++D+IEGVSECII+G  M +GTG  K
Sbjct: 1360 GITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKIEGVSECIILGQTMSIGTGSFK 1419

Query: 1245 I 1245
            +
Sbjct: 1420 L 1420


>gi|238881190|gb|EEQ44828.1| DNA-directed RNA polymerase III largest subunit [Candida albicans
            WO-1]
          Length = 1448

 Score = 1170 bits (3028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/1321 (47%), Positives = 842/1321 (63%), Gaps = 103/1321 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHDR 55
            +R P ++ LR+  ++K I+++C     K  +C +C +ING+VKKA      A L I+HD 
Sbjct: 127  LRKPHIDNLRRMKIIKKIIEQCK----KQRRCLKCNHINGVVKKAASGAGPAALKIVHDT 182

Query: 56   SKVT---ESLQ------EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +     E+L+      E         E +         LNP+  L LFK++T  DCE+ 
Sbjct: 183  FRWIGKKETLEKTIWDEELDQVFIRNPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELF 242

Query: 107  YLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
             L      RPE  I   +  PP+ IRPSV+MD +QSNE+D+T +L  I+ T++ ++  +V
Sbjct: 243  GLDPAKGGRPEMYIWRYLPAPPVCIRPSVMMD-AQSNEDDLTVKLTEIVWTSSMIRAGIV 301

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM-----QVARPLSGFVQRLKGKQGRFR 217
            +  S    +  W+ LQ+ VA YINSD      S      + ++P+  F QRLKGKQGRFR
Sbjct: 302  KGISINNLMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFR 361

Query: 218  GNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPD 277
            GNLSGKRV+++GRTVISPDPNLKI EVA+P R+A++LTYPE+ + +N +KL++ + NGPD
Sbjct: 362  GNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPD 421

Query: 278  KYPGAR--MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMS 335
             +PGA   M +   G   + +G  R +LA  L+ G +V+RH+EDGDVVLFNRQPSLHR+S
Sbjct: 422  IHPGANYVMKQNEPGKRNLRFGD-RVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRLS 480

Query: 336  IMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTP 395
            I+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TP
Sbjct: 481  ILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTP 540

Query: 396  KNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELW 455
            K+GE ++A+TQDF+T S+LI+ KD+F+DRA    +   M D   + D+P P I KPV LW
Sbjct: 541  KSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTIFKPVMLW 600

Query: 456  TGKQLFSVLIRPHANMRVYVNLTVKEKTYS--NKLIRTEGDEEIRIETMCPNDGFVYFRN 513
            TGKQ+FS+LI+P+    V +NL  K KT+    K +  E         M PNDGFV  R 
Sbjct: 601  TGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGLPNE---------MSPNDGFVVIRG 651

Query: 514  SELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDD 573
            S+++SG + K+TLG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI+D
Sbjct: 652  SKILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGIND 711

Query: 574  VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRED 633
            V P  EL  KK  ++ + Y  C+  I  YN GKL+ +PGC+  QTLEA I  +L+++RE+
Sbjct: 712  VTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREE 771

Query: 634  AGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFP 693
             G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF 
Sbjct: 772  VGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFT 831

Query: 694  RKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDL 753
            + +K P +KGFV NSF+SGL+  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDL
Sbjct: 832  KNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDL 891

Query: 754  SIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLS 813
            S QYDN+VRN+   IVQF YG DG+DP +MEG + +P+NF+R                L 
Sbjct: 892  SSQYDNTVRNSSNGIVQFTYGGDGLDPYDMEGDA-KPVNFNRQWDHAYNLTYNVDDASLL 950

Query: 814  PQQVSEIVEKQLAA-------------------------YGKESCSE-AFLNSLRKFFEG 847
            P Q+ E+V+  LA                          Y  ++  E  F  S+R F   
Sbjct: 951  PYQIEELVDSVLAPLENKLIRYDNLGNALNDKEKEQKIEYIDQNDGERDFYKSIRDFLTK 1010

Query: 848  QQDKLDK-------KIKF---VEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRY 897
            +  +L +       K  F    ED    D+  +  +   + S I+ K ++ F++ C  +Y
Sbjct: 1011 KSIRLARLREERGLKAYFTAPTEDEIVMDEDTVKVKAIDQLSKISSKAVKTFLEQCLYKY 1070

Query: 898  RVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRIST 957
               RVE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K IST
Sbjct: 1071 SRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVIST 1130

Query: 958  PIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHL 1017
            PII A L  +D+E AARV KGRIEKTLL  VA  I+ V    LA + I +D+ETI    L
Sbjct: 1131 PIINAVLVNDDDEIAARVAKGRIEKTLLEDVAFYIEDVYKDNLAYLSIKIDLETIDKLQL 1190

Query: 1018 CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK-------------IHFEL 1064
             +N + +  +I   PK+K+ Q  + V    ++ +   + ++K             + F +
Sbjct: 1191 ELNLENIAVAIANAPKLKIAQSDVSVTGKDRINVLVNIKETKTESLRNTVDPKNALFFRM 1250

Query: 1065 YSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGI 1124
              LK  LP V +KG+  + R VI         +K++G+K+   LLVEG GL+ VM  EGI
Sbjct: 1251 QYLKRALPGVCIKGLPNIFRAVI--------NIKDDGKKE---LLVEGYGLKDVMNTEGI 1299

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
             G KT +NH+ EV Q LGIEAAR  II EI+ TM  HGMS+D RH+ LL D+MT++GEVL
Sbjct: 1300 VGTKTTTNHVLEVNQILGIEAARGSIIKEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVL 1359

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
            GITRFG+ KM  SVL LASFEKT DHLF+A+   ++D+IEGVSECII+G  M +GTG  K
Sbjct: 1360 GITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKIEGVSECIILGQTMSIGTGSFK 1419

Query: 1245 I 1245
            +
Sbjct: 1420 L 1420


>gi|328354455|emb|CCA40852.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
            7435]
          Length = 1460

 Score = 1169 bits (3025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1330 (46%), Positives = 864/1330 (64%), Gaps = 105/1330 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLG-----IIHD- 54
            +R+P  + LR+  ++K I+++    A K  +C +CG +NG+VKKA A  G     +IHD 
Sbjct: 127  LRSPNNDNLRRMKIIKRILEQ----AKKQRRCLKCGALNGVVKKASAGAGPASLKVIHDT 182

Query: 55   --------RSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
                      +  E  ++F + + +  + +  +  A   LNP+ VL LFK++  +DCE+L
Sbjct: 183  FRWIGKKPSQEKVEWYEDFDNLLINNPDLEKFLKRAYDDLNPLKVLNLFKQVDPSDCELL 242

Query: 107  YLSE----RPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQEL 161
             +      RPE  +   +  PP+ IRPSV+M D + SNE+D+T +L  I+  ++ ++  +
Sbjct: 243  GIDTTRGGRPEMYLWRYVPAPPVCIRPSVLMSDSNTSNEDDLTVKLTEIVWISSLIRAGI 302

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA--------RPLSGFVQRLKGKQ 213
             +  S    +  W+ LQ+ VA YINSD   +      A        +P+ GF QRLKGKQ
Sbjct: 303  EKGISINNLIEQWDYLQLSVAMYINSDAGNMSMLPSAAGSAGSKSSKPIRGFCQRLKGKQ 362

Query: 214  GRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQ 273
            GRFRGNLSGKRV+++GRTVISPDPNL+I EVA+P R+A++LTYPE+V+ +N  KL+Q + 
Sbjct: 363  GRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPDRVAKVLTYPEKVTRYNKHKLQQLVL 422

Query: 274  NGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
            NGPD +PGA  +++  +   R L    R +LA  L+ G IV+RHLEDGDVVLFNRQPSLH
Sbjct: 423  NGPDVHPGANYLLKRDEQNRRNLRFGNRQKLANTLQIGDIVERHLEDGDVVLFNRQPSLH 482

Query: 333  RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
            R+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR+EA+ LMGV+NNL
Sbjct: 483  RLSILSHFAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARSEAMNLMGVKNNL 542

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
             TPK+GE ++A+TQDF+T S+LI+ KDTF+DRA+   +   M DG++  DLP P+I KP 
Sbjct: 543  LTPKSGEPIIAATQDFITGSYLISHKDTFFDRASLVQILASMSDGIEHFDLPPPSIFKPA 602

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFR 512
             LWTGKQ+FS+LI+P+A   V +NL  K KT+    I     +      M PNDGFV  R
Sbjct: 603  YLWTGKQVFSLLIKPNAKSNVNINLDAKCKTF----IPPPAGQP---SEMSPNDGFVIVR 655

Query: 513  NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
             S+++SG + K+ LG+G K  ++  +LRDYG H  +  MNR+AKL AR++GN GFSIGI+
Sbjct: 656  GSKILSGVMDKSLLGDGKKHSVFYTILRDYGPHEAANAMNRMAKLCARYLGNRGFSIGIN 715

Query: 573  DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
            DV P  ELS +K  ++ E Y+ C+  IK +N GKL+ +PGC+  QTLEA I  +L+++RE
Sbjct: 716  DVTPGDELSREKECMVEEAYKKCDELIKLFNHGKLETQPGCNEEQTLEAKIGGLLSKVRE 775

Query: 633  DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
            + G+ C+  LP  N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF
Sbjct: 776  EVGEVCIKELPSSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 835

Query: 693  PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
             + +K P +KGFV NSFYSGL+  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LED
Sbjct: 836  LKNSKTPQSKGFVRNSFYSGLNPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 895

Query: 753  LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL---------------- 796
            LS QYD++VRN+   +VQF YG DG+DP +MEG + +P+NF R                 
Sbjct: 896  LSAQYDHTVRNSSSGVVQFTYGGDGLDPLDMEGDA-KPVNFKRTWDHAYNITFNNEDKPL 954

Query: 797  ----LMKVKAT-CPPAGQRYLSPQQVSEIVEKQLA---AYGKESCSE-AFLNSLRKFFEG 847
                +MK+  +   P   R +    +  IV  + A    Y  +  +E  F ++L+ F   
Sbjct: 955  LPYEIMKIADSFLDPLKDRLVRLDNLGNIVNPEDADNIEYIDQFDAERTFYDTLKDFLFQ 1014

Query: 848  QQDKLD--KKIKFVEDIGWDDKSQILEEVTHKTS-------GITEKQLEVFIQTCFSRYR 898
            +  +L   ++ K    +  + +S + E   H  S        ITE  +  F++   ++Y 
Sbjct: 1015 KTKQLAALRESKGFPGLLQEPESFVDESPDHSVSILINQLYRITEAAVTKFLELSATKYN 1074

Query: 899  VKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTP 958
              +VE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K ISTP
Sbjct: 1075 RAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKTISTP 1134

Query: 959  IITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLC 1018
            II A L   D+E AARVVKGRIEKT+L  V   I+ V     A + + +D+ETI+   L 
Sbjct: 1135 IINAVLVNEDDERAARVVKGRIEKTILQDVVYYIQDVYKENQAYLQVKVDLETIERLQLE 1194

Query: 1019 INADIVKESIVQTPKIKLKQQHIKVLDFRKLEI------FPPVDKS-------------- 1058
            +N D ++ +IV+ PK+KL  + + +    K+ +         + K+              
Sbjct: 1195 LNIDEIRLAIVKAPKLKLALEDVIITGRNKISVCVSDALLDSISKTAAAKGIDTSSTMAN 1254

Query: 1059 KIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
            ++ F +  LK VL  V+VKG+  + R VI         ++++G+K+   LLVEG GL+ V
Sbjct: 1255 ELFFRMQHLKRVLTKVVVKGLPDISRAVI--------NIRDDGKKE---LLVEGYGLKEV 1303

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            +  +G+ GCKTK+NH+ EV +TLGIEAAR CII+EI+ TM  HGMS+D RH+ LL D+M+
Sbjct: 1304 IATDGVVGCKTKTNHVLEVYETLGIEAARSCIINEIDYTMSKHGMSVDPRHIQLLGDVMS 1363

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
            ++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSEC+I+G  M +
Sbjct: 1364 YKGEVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKKDLVEGVSECVILGQTMTI 1423

Query: 1239 GTGILKIRQR 1248
            GTG  ++ ++
Sbjct: 1424 GTGAFQLVKK 1433


>gi|254573222|ref|XP_002493720.1| RNA polymerase III subunit C160, part of core enzyme [Komagataella
            pastoris GS115]
 gi|238033519|emb|CAY71541.1| RNA polymerase III subunit C160, part of core enzyme [Komagataella
            pastoris GS115]
          Length = 1460

 Score = 1169 bits (3024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1330 (46%), Positives = 863/1330 (64%), Gaps = 105/1330 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLG-----IIHD- 54
            +R+P  + LR+  ++K I+++    A K  +C +CG +NG+VKKA A  G     +IHD 
Sbjct: 127  LRSPNNDNLRRMKIIKRILEQ----AKKQRRCLKCGALNGVVKKASAGAGPASLKVIHDT 182

Query: 55   --------RSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
                      +  E  ++F + + +  + +  +  A   LNP+ VL LFK++  +DCE+L
Sbjct: 183  FRWIGKKPSQEKVEWYEDFDNLLINNPDLEKFLKRAYDDLNPLKVLNLFKQVDPSDCELL 242

Query: 107  YLSE----RPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQEL 161
             +      RPE  +   +  PP+ IRPSV+M D + SNE+D+T +L  I+  ++ ++  +
Sbjct: 243  GIDTTRGGRPEMYLWRYVPAPPVCIRPSVLMSDSNTSNEDDLTVKLTEIVWISSLIRAGI 302

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA--------RPLSGFVQRLKGKQ 213
             +  S    +  W+ LQ+ VA YINSD   +      A        +P+ GF QRLKGKQ
Sbjct: 303  EKGISINNLIEQWDYLQLSVAMYINSDAGNMSMLPSAAGSAGSKSSKPIRGFCQRLKGKQ 362

Query: 214  GRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQ 273
            GRFRGNLSGKRV+++GRTVISPDPNL+I EVA+P R+A++LTYPE+V+ +N  KL+Q + 
Sbjct: 363  GRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPDRVAKVLTYPEKVTRYNKHKLQQLVL 422

Query: 274  NGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
            NGPD +PGA  +++  +   R L    R +LA  L+ G IV+RHLEDGDVVLFNRQPSLH
Sbjct: 423  NGPDVHPGANYLLKRDEQNRRNLRFGNRQKLANTLQIGDIVERHLEDGDVVLFNRQPSLH 482

Query: 333  RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
            R+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR+EA+ LMGV+NNL
Sbjct: 483  RLSILSHFAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARSEAMNLMGVKNNL 542

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
             TPK+GE ++A+TQDF+T S+LI+ KDTF+DRA+   +   M DG++  DLP P+I KP 
Sbjct: 543  LTPKSGEPIIAATQDFITGSYLISHKDTFFDRASLVQILASMSDGIEHFDLPPPSIFKPA 602

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFR 512
             LWTGKQ+FS+LI+P+A   V +NL  K KT+    I     +      M PNDGFV  R
Sbjct: 603  YLWTGKQVFSLLIKPNAKSNVNINLDAKCKTF----IPPPAGQP---SEMSPNDGFVIVR 655

Query: 513  NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
             S+++SG + K+ LG+G K  ++  +LRDYG H  +  MNR+AKL AR++GN GFSIGI+
Sbjct: 656  GSKILSGVMDKSLLGDGKKHSVFYTILRDYGPHEAANAMNRMAKLCARYLGNRGFSIGIN 715

Query: 573  DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
            DV P  ELS +K  ++ E Y+ C+  IK +N GKL+ +PGC+  QTLEA I  +L+++RE
Sbjct: 716  DVTPGDELSREKECMVEEAYKKCDELIKLFNHGKLETQPGCNEEQTLEAKIGGLLSKVRE 775

Query: 633  DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
            + G  C+  LP  N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF
Sbjct: 776  EVGGVCIKELPSSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 835

Query: 693  PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
             + +K P +KGFV NSFYSGL+  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LED
Sbjct: 836  LKNSKTPQSKGFVRNSFYSGLNPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 895

Query: 753  LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL---------------- 796
            LS QYD++VRN+   +VQF YG DG+DP +MEG + +P+NF R                 
Sbjct: 896  LSAQYDHTVRNSSSGVVQFTYGGDGLDPLDMEGDA-KPVNFKRTWDHAYNITFNNEDKPL 954

Query: 797  ----LMKVKAT-CPPAGQRYLSPQQVSEIVEKQLA---AYGKESCSE-AFLNSLRKFFEG 847
                +MK+  +   P   R +    +  IV  + A    Y  +  +E  F ++L+ F   
Sbjct: 955  LPYEIMKIADSFLDPLKDRLVRLDNLGNIVNPEDADNIEYIDQFDAERTFYDTLKDFLFQ 1014

Query: 848  QQDKLD--KKIKFVEDIGWDDKSQILEEVTHKTS-------GITEKQLEVFIQTCFSRYR 898
            +  +L   ++ K    +  + +S + E   H  S        ITE  +  F++   ++Y 
Sbjct: 1015 KTKQLAALRESKGFPGLLQEPESFVDESPDHSVSILINQLYRITEAAVTKFLELSATKYN 1074

Query: 899  VKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTP 958
              +VE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K ISTP
Sbjct: 1075 RAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKTISTP 1134

Query: 959  IITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLC 1018
            II A L   D+E AARVVKGRIEKT+L  V   I+ V     A + + +D+ETI+   L 
Sbjct: 1135 IINAVLVNEDDERAARVVKGRIEKTILQDVVYYIQDVYKENQAYLQVKVDLETIERLQLE 1194

Query: 1019 INADIVKESIVQTPKIKLKQQHIKVLDFRKLEI------FPPVDKS-------------- 1058
            +N D ++ +IV+ PK+KL  + + +    K+ +         + K+              
Sbjct: 1195 LNIDEIRLAIVKAPKLKLALEDVIITGRNKISVCVSDALLDSISKTAAAKGIDTSSTMAN 1254

Query: 1059 KIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
            ++ F +  LK VL  V+VKG+  + R VI         ++++G+K+   LLVEG GL+ V
Sbjct: 1255 ELFFRMQHLKRVLTKVVVKGLPDISRAVI--------NIRDDGKKE---LLVEGYGLKEV 1303

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            +  +G+ GCKTK+NH+ EV +TLGIEAAR CII+EI+ TM  HGMS+D RH+ LL D+M+
Sbjct: 1304 IATDGVVGCKTKTNHVLEVYETLGIEAARSCIINEIDYTMSKHGMSVDPRHIQLLGDVMS 1363

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
            ++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSEC+I+G  M +
Sbjct: 1364 YKGEVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKKDLVEGVSECVILGQTMTI 1423

Query: 1239 GTGILKIRQR 1248
            GTG  ++ ++
Sbjct: 1424 GTGAFQLVKK 1433


>gi|91092426|ref|XP_968165.1| PREDICTED: similar to AGAP004703-PA [Tribolium castaneum]
 gi|270004743|gb|EFA01191.1| hypothetical protein TcasGA2_TC010518 [Tribolium castaneum]
          Length = 1390

 Score = 1168 bits (3021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/1278 (49%), Positives = 837/1278 (65%), Gaps = 67/1278 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA--------VLGII 52
            + N  +  + K  + K I++KC     K  KCP C   NG VKK  A        VL I+
Sbjct: 129  LSNEHLSYMTKKAIRKKIIEKCR----KLTKCPYCKESNGFVKKLTASKGSTGGSVLKIV 184

Query: 53   HDRSK-------VTESLQEFASAITHTKESKAAV---NVATYILNPVNVLFLFKRMTDTD 102
             ++++       + E +++F SAI    E K A+   +  + IL P++VL LF+R+  +D
Sbjct: 185  CEKNRGSDKETVLKEHIEKFNSAIDVNPEIKNALTANSAVSQILTPIDVLKLFERIPQSD 244

Query: 103  CEVLYLSER---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQ 158
              +L +  R   P+ LI T + VPP++IRPSV+ D  + +NE+D+T R   II  N  ++
Sbjct: 245  IPLLAMDSRRSQPKDLIFTRMLVPPVSIRPSVVSDLKAGTNEDDLTMRQSEIIFINDVIK 304

Query: 159  QELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRG 218
            +  +   S      GW+ LQ++ A YINS++ G+P +M   +P  G VQRLKGKQGRFRG
Sbjct: 305  KHKLSGASVNMYQEGWDFLQLQTALYINSELSGIPLAMMPKKPGRGLVQRLKGKQGRFRG 364

Query: 219  NLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDK 278
            NLSGKRV+++ RTVISPDPNL+I +V +P+ +A+ILT+PERV   NI+ +RQ + NGPDK
Sbjct: 365  NLSGKRVDFSSRTVISPDPNLQIDQVGVPLHIAKILTFPERVIHANIDVMRQLVINGPDK 424

Query: 279  YPGARMIRYPDGTARVLYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSI 336
            +PGA  ++   G+A   + K+  R +LA ELK G +V+RHL + DVVLFNRQPSLH++SI
Sbjct: 425  WPGANYVQ-QKGSAFKKFLKYGNREKLAQELKLGDLVERHLHNDDVVLFNRQPSLHKLSI 483

Query: 337  MCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPK 396
            M HR ++   RT RFNE VCNPYNADFDGDEMN+H+PQTEEA+ EAL+LMG +NNL TP+
Sbjct: 484  MAHRTKVHQHRTFRFNECVCNPYNADFDGDEMNLHLPQTEEAKAEALILMGNKNNLVTPR 543

Query: 397  NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM---GDGMDRVDLPTPAILKPVE 453
            NGE+L+A+TQDFLT  +L+T+KDTF D A  S +   +    D   ++DLPTP ILKP  
Sbjct: 544  NGELLIAATQDFLTGGYLLTKKDTFLDLAHASQLAATLLAENDTNMQIDLPTPCILKPRR 603

Query: 454  LWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRN 513
            LW+GKQ+ S++ RP+    V  NL  K K Y+                +C  D +V  RN
Sbjct: 604  LWSGKQICSLIFRPNKKCPVKANLEAKGKAYTKN------------RELCVKDSYVLIRN 651

Query: 514  SELISGQLGKATLGNGNK-DGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
            SELI+G L K+ LG+G K + ++ V+LRD+G+      M RLAKL++ ++ N GFSIGI 
Sbjct: 652  SELIAGTLDKSHLGSGGKGNNIFYVILRDFGSEYAIKSMWRLAKLTSYYLMNSGFSIGIG 711

Query: 573  DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
            DV P K L  +K KL+ + Y  C+  I++  +G+LQ +PGC A +TLEAVI   L+ IRE
Sbjct: 712  DVTPSKGLLRRKNKLLEDGYTKCDEYIRQMADGRLQCQPGCTAEETLEAVILKELSVIRE 771

Query: 633  DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
             AG+AC+  L   NSPLIM+  GSKGS INISQM+ACVGQQ++ G+R P+GF +RSLPHF
Sbjct: 772  HAGQACLAELHPTNSPLIMALSGSKGSFINISQMIACVGQQALNGKRVPDGFENRSLPHF 831

Query: 693  PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
            P  +K P AKGFV NSFY+GL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K+LED
Sbjct: 832  PHHSKTPEAKGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLED 891

Query: 753  LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYL 812
            L + YD SVRNA G IVQ  YG DG+DP  MEGK   P++FDR+L  V+A CP   +  L
Sbjct: 892  LVVHYDGSVRNAEGDIVQVNYGGDGLDPTYMEGKDC-PVDFDRVLRHVQAKCPYRDETIL 950

Query: 813  SPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILE 872
            +  Q+    +  L       CSE F   L+ F     DK+  +++ + +   D K     
Sbjct: 951  NSVQIRRATKTFLETDALNECSEEFKAELKNFM----DKVALRVENIYNKFGDGK----- 1001

Query: 873  EVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 932
             V  +   +T  QL  F+Q C S+Y    +E GTA+GA+ AQSIGEPGTQMTLKTFHFAG
Sbjct: 1002 -VVKEIERLTCSQLVTFLQICGSKYTRSIIEPGTAVGALAAQSIGEPGTQMTLKTFHFAG 1060

Query: 933  VASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSI 992
            VASMNITQGVPRIKEIIN +K ISTPIITA L    +   AR VK RIE+T LG+VA  I
Sbjct: 1061 VASMNITQGVPRIKEIINASKDISTPIITASLTNPRDIGFAREVKARIERTTLGEVATFI 1120

Query: 993  KIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIF 1052
              + T     ++I L+ + I+   L INA+ V+ SI  T K+KLK   ++V     + + 
Sbjct: 1121 DEIYTQYDCFLLIQLNYDRIKLLKLEINAETVRYSIC-TSKLKLKPNEVRVESETIITVS 1179

Query: 1053 PPVDK--SKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLV 1110
            P   K   + +F L  LK  LP V+VKG+ TV R VIA++EK        G +  Y L V
Sbjct: 1180 PSGSKHTHRFNFSLNELKAKLPSVVVKGLPTVNRAVIAKEEK--------GGETLYNLCV 1231

Query: 1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
            EG  L+ V+   G+ G KT SN+I EV  TLGIEAAR  I+ EI   M+ HGMS+D RH+
Sbjct: 1232 EGDNLREVIATYGVLGTKTVSNNIMEVYHTLGIEAARETIMSEIKMVMENHGMSVDYRHI 1291

Query: 1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
            MLLA  MT  GEVLGITR+G+ KM +S+L LASFEKTADHLF+A+  G+ D+I GVSE I
Sbjct: 1292 MLLAAQMTHTGEVLGITRYGLSKMKQSILNLASFEKTADHLFDAAYYGQVDKINGVSENI 1351

Query: 1231 IMGIPMPLGTGILKIRQR 1248
            IMG+P P+GTGI K+  +
Sbjct: 1352 IMGMPAPIGTGIFKLLHK 1369


>gi|149234447|ref|XP_001523103.1| DNA-directed RNA polymerase III largest subunit [Lodderomyces
            elongisporus NRRL YB-4239]
 gi|146453212|gb|EDK47468.1| DNA-directed RNA polymerase III largest subunit [Lodderomyces
            elongisporus NRRL YB-4239]
          Length = 1450

 Score = 1166 bits (3017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1322 (47%), Positives = 841/1322 (63%), Gaps = 104/1322 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHDR 55
            +R P ++ L++  ++K +  +C     K  +C +C ++NG+VKKA      A L I+HD 
Sbjct: 128  LRKPDIDNLKRMKILKKVSDQCK----KQRRCLKCNHVNGVVKKAASGAGPAALKIVHDT 183

Query: 56   SKVT---------ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +           E  +E         E +      T   NP+  L LFK++T +DCE+ 
Sbjct: 184  FRWIGKKDTPEKEEWDKEIEQVFMRNPELEKYAKRITEDFNPLKTLNLFKQITPSDCELF 243

Query: 107  YLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
             +      RPE  I   +  PP+ IRPSV+MD +QSNE+D+T +L  I+ T++ ++  + 
Sbjct: 244  GMDPLRGGRPEMYIWRYLPAPPVCIRPSVMMD-AQSNEDDLTVKLTEIVWTSSMIKAGIA 302

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVAR----------PLSGFVQRLKGK 212
            +  S    +  W+ LQ+ VA YINSD         V            P+ GF QRLKGK
Sbjct: 303  KGISMNNLMEQWDYLQLSVAMYINSDSANPALIPSVGGGGGGGSKSSKPIRGFCQRLKGK 362

Query: 213  QGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCI 272
            QGRFRGNLSGKRV+++GRTVISPDPNLKI EVA+P R+A++LTYPE+ + +N  KL+Q I
Sbjct: 363  QGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKRKLQQLI 422

Query: 273  QNGPDKYPGARMIRYPD--GTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPS 330
             NGPD +PGA  ++  +  G   + +G  R++LA  L+ G +V+RH+EDGDVVLFNRQPS
Sbjct: 423  INGPDHHPGANYVQKQNEPGKRNLRFGD-RHKLARSLQVGDLVERHIEDGDVVLFNRQPS 481

Query: 331  LHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQN 390
            LHR+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+N
Sbjct: 482  LHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKN 541

Query: 391  NLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILK 450
            NL TPK+GE ++A+TQDF+T S+LI+ KDTF DRA+   +   M D     D+P PAI K
Sbjct: 542  NLLTPKSGEPIIAATQDFITGSYLISHKDTFLDRASLVQLLSMMSDADIHFDIPPPAIFK 601

Query: 451  PVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTY--SNKLIRTEGDEEIRIETMCPNDGF 508
            PV LWTGKQ+FS+LI+P+   +V +NL  K KT   + K    E         M  NDG+
Sbjct: 602  PVMLWTGKQVFSLLIKPNKQSKVIINLNAKNKTCHPAPKGFPPE---------MSTNDGY 652

Query: 509  VYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFS 568
            V  R S+++SG + K+TLG+G KD ++ V+LRDYG H  +  MNR+AKL AR++GN GFS
Sbjct: 653  VVIRGSQILSGLMDKSTLGDGKKDSVFYVILRDYGPHEAAAAMNRMAKLCARYLGNRGFS 712

Query: 569  IGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILN 628
            IGI+DV P  EL  KK  ++ + Y  C+  I  +N GKL+ +PGC+  +TLEA I  +L+
Sbjct: 713  IGINDVTPATELRQKKELMVEQAYLKCDQLIDLFNRGKLETQPGCNEEETLEAKIGGLLS 772

Query: 629  RIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRS 688
            ++RE+ G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRS
Sbjct: 773  KVREEVGNECIRELDSLNAPLIMATCGSKGSIVNVSQMVAVVGQQIISGHRVPDGFQDRS 832

Query: 689  LPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIK 748
            LPHF + +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKTA+TGYMSRRL+K
Sbjct: 833  LPHFTKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMK 892

Query: 749  ALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAG 808
            +LEDLS QYD++VRN+   IVQF YG DG+DP +MEG + +P+NF R           A 
Sbjct: 893  SLEDLSAQYDDTVRNSSNGIVQFTYGGDGLDPYDMEGDA-KPVNFIRQWDHAYNLTFSAN 951

Query: 809  QRYLSPQQVSEIVEKQL------------------AAYGKESCSEAFLNSLRKFFEGQQD 850
             + L P Q+ ++VE+ L                      ++     F  S+R F   + +
Sbjct: 952  DKSLLPYQIMDVVEQTLRPREEALKTGDEEGKTEDQLVDQKDAQREFYRSVRDFMAQKAE 1011

Query: 851  KLDK-------KIKFVEDIGWDDKSQ-ILEEVTHKTSG------ITEKQLEVFIQTCFSR 896
            +L +       K  F  D    D+ + +L+E   K +       I++K +++F+  C  +
Sbjct: 1012 RLARLREERGLKPYFTFDKQSSDQDEMVLDEDASKVNAIDQLMKISKKTVKIFLTQCLYK 1071

Query: 897  YRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRIS 956
            Y   +VEAGTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K IS
Sbjct: 1072 YSRAKVEAGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKTIS 1131

Query: 957  TPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAH 1016
            TPII A L   D+E AARV KGRIEKT L  V+  I+ V    LA + I +D+++I+   
Sbjct: 1132 TPIINAVLVNEDDEIAARVAKGRIEKTSLKDVSIYIEDVYKDNLAFLSIKVDLDSIEKLQ 1191

Query: 1017 LCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK-------------IHFE 1063
            L ++   + E+I + PK+K+ Q  + V+   ++ +   V +SK             + F 
Sbjct: 1192 LELDISNIAEAICKAPKLKISQSDVSVMGKDRILVACRVTESKTESLKSGEDQRNNLFFR 1251

Query: 1064 LYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEG 1123
            +  LK VLP + +KG+  + R VI  K+  K++           LLVEG GL+ VM  EG
Sbjct: 1252 MQLLKRVLPDICIKGLPNIFRAVINIKDDNKKE-----------LLVEGYGLKDVMNTEG 1300

Query: 1124 IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
            I G KT +NH+ EV + LGIEAAR  II EI+ TM  +GMS+D RH+ LL D+MT++GEV
Sbjct: 1301 IVGTKTTTNHVLEVNEILGIEAARSSIIREIDYTMSNYGMSVDPRHIQLLGDVMTYKGEV 1360

Query: 1184 LGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGIL 1243
            LGITRFG+ KM  SVL LASFEKT DHLF+A+   + D+IEGVSECII+G  M +GTG  
Sbjct: 1361 LGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKRDKIEGVSECIILGQTMAIGTGAF 1420

Query: 1244 KI 1245
            K+
Sbjct: 1421 KL 1422


>gi|354544265|emb|CCE40988.1| hypothetical protein CPAR2_110260 [Candida parapsilosis]
          Length = 1446

 Score = 1165 bits (3013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1330 (46%), Positives = 843/1330 (63%), Gaps = 124/1330 (9%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHDR 55
            +R P ++ L++  ++K I  +C     K  +C +C ++NG+VKKA      A L I+HD 
Sbjct: 128  LRRPNIDNLKRMKILKRINDQCK----KQRRCLKCNHVNGVVKKAASGAGPASLKIVHDT 183

Query: 56   SKV----------------------TESLQEFASAITHTKESKAAVNVATYILNPVNVLF 93
             +                          L++FA  I                 NP+  L 
Sbjct: 184  FRWIGKKDTPEKTLWDEDLDLVFQRNPDLEKFAKRIQED-------------FNPLKTLN 230

Query: 94   LFKRMTDTDCEVLYLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKR 149
            LFK++   DCE+L +      RPE  I   +  PP+ IRPSV+MD +QSNE+D+T +L  
Sbjct: 231  LFKQIIPEDCELLGMDSSKGGRPETYIWRYLPAPPVCIRPSVMMD-AQSNEDDLTVKLTE 289

Query: 150  IIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPF----------SMQVA 199
            I+ T++ ++  + +  S    +  W+ LQ+ VA YINSD                  + A
Sbjct: 290  IVWTSSMIKAGITKGISINNLMEQWDYLQLSVAMYINSDAANPALMSGGGGGGGSGSKSA 349

Query: 200  RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
            +P+ GF QRLKGKQGRFRGNLSGKRV+++GRTVISPDPNLKI EVA+P R+A++LTYPE+
Sbjct: 350  KPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEK 409

Query: 260  VSDHNIEKLRQCIQNGPDKYPGARMI-RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
             + +N +KL+  I NGPD +PGA  + +  +   R L    R +LA  L+ G +V+RH+E
Sbjct: 410  CTRYNKKKLQGLIINGPDVHPGANYVMKQNEAGKRNLRFGDRIKLAKSLQVGDVVERHIE 469

Query: 319  DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
            DGDVVLFNRQPSLHR+SI+ H A++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEA
Sbjct: 470  DGDVVLFNRQPSLHRLSILAHYAKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEA 529

Query: 379  RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
            R EA+ LMGV+NNL TPK+GE ++A+TQDF+T S+LI+ KD+F+DRA+   +   M D  
Sbjct: 530  RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRASLVQLLSMMSDAD 589

Query: 439  DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS--NKLIRTEGDEE 496
             + D+P P I+KP+ LWTGKQ+FS+LI+P+ + +V +NL  K KT+    K + +E    
Sbjct: 590  IQFDIPPPTIVKPIMLWTGKQVFSLLIKPNRHSKVVINLNAKNKTFHPPAKGLPSE---- 645

Query: 497  IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
                 M PNDGFV  R S+++SG + K+TLG+G K  ++  +LRDYG    +  MNR+AK
Sbjct: 646  -----MSPNDGFVIIRGSQILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAK 700

Query: 557  LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
            L AR++GN GFSIGI+DV P  EL  KK  ++ + Y  C+  I  YN GKL+ +PGC+  
Sbjct: 701  LCARFLGNRGFSIGINDVTPAHELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEE 760

Query: 617  QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
            QTLEA I  +L+++RE+ G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + 
Sbjct: 761  QTLEAKIGGLLSKVREEVGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIIS 820

Query: 677  GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
            G R P+GF DRSLPHF + +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKT
Sbjct: 821  GHRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKT 880

Query: 737  ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
            A+TGYMSRRL+K+LEDLS QYDN+VRN+   IVQF YG DG+DP +MEG + +P+NF R 
Sbjct: 881  AETGYMSRRLMKSLEDLSSQYDNTVRNSSNGIVQFTYGGDGLDPYDMEGDA-KPVNFIRQ 939

Query: 797  LMKVKATCPPAGQRYLSPQQVSEIVEKQL-------AAYGKESCSE-----------AFL 838
                         + L P ++ E+ +K L       A  G ES SE           AF 
Sbjct: 940  WDHAYNITYNVNDKPLLPYEIVELADKTLKPLVDKVAVVGTESQSEDELVDQKDAEKAFY 999

Query: 839  NSLRKFFEGQQDKLDK----------KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEV 888
             S+R+F   + +KL +            K  ED    D+ ++     ++   I+ +  + 
Sbjct: 1000 ESVREFLREKAEKLARLRESRGLKAYYNKIHEDEILVDEDEVKLNAVNQLMRISHRAAKE 1059

Query: 889  FIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEI 948
            F++ C  +Y   +VE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEI
Sbjct: 1060 FMKQCLYKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1119

Query: 949  INGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALD 1008
            IN +K ISTPII A L  +D+E AARV KGRIEKTLL  VA  I+ V    +A + I +D
Sbjct: 1120 INASKTISTPIINAVLVNDDDEIAARVAKGRIEKTLLKDVAFYIEDVYKDNMAYLAIKID 1179

Query: 1009 METIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK--------- 1059
            +ETI    L +  + + ++I + PK+++    + +    ++ +   V++SK         
Sbjct: 1180 LETIDKLQLELTIENIAQAIFKAPKLRIAPSDVVITAKNRINVLCNVNESKSESLKSVGD 1239

Query: 1060 ----IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGL 1115
                + F + +LK VLP + +KG+  + R VI         +K++G+K+   LLVEG GL
Sbjct: 1240 SSNALFFRMQTLKRVLPDICIKGLPNIFRAVI--------NIKDDGKKE---LLVEGYGL 1288

Query: 1116 QAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLAD 1175
            + VM  EGI G KT +NH+ EV + LGIEAAR  II EI  TM  HGMS+D RH+ LL D
Sbjct: 1289 KDVMNTEGIVGTKTTTNHVLEVNEILGIEAARGSIIREIEYTMSNHGMSVDPRHIQLLGD 1348

Query: 1176 LMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIP 1235
            +MT++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D+IEGVSECII+G  
Sbjct: 1349 VMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKKDKIEGVSECIILGQT 1408

Query: 1236 MPLGTGILKI 1245
            M +GTG  K+
Sbjct: 1409 MRVGTGAFKL 1418


>gi|221043166|dbj|BAH13260.1| unnamed protein product [Homo sapiens]
          Length = 1369

 Score = 1165 bits (3013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/1275 (49%), Positives = 840/1275 (65%), Gaps = 73/1275 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKNICHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ +QNGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  VILRPSDDNPVRANLRTKGKQYCGK-----------GEDLCANDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCPSEPALSKNELILTTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+  Q                     MNIT GV
Sbjct: 1008 PTQVEKFLETCRDKYMRAQMEPGSAVGALCTQ---------------------MNITLGV 1046

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1047 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1106

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS ++
Sbjct: 1107 ILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1165

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1166 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1217

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1218 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1277

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1278 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1337

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1338 LFKLLHKADRDPNPP 1352


>gi|344305554|gb|EGW35786.1| DNA-directed RNA polymerase III subunit C1 [Spathaspora passalidarum
            NRRL Y-27907]
          Length = 1445

 Score = 1164 bits (3010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 624/1319 (47%), Positives = 840/1319 (63%), Gaps = 101/1319 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHD- 54
            +R P ++ LR+  +++ ++ +C     K  +C +C ++NG+VKKA      A L I+HD 
Sbjct: 127  LRKPNIDNLRRMKILRKVLDQCK----KQRRCLKCNHVNGVVKKAASGAGPAALKIVHDT 182

Query: 55   ------RSKVTESL--QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
                  +    + L  QEF        E +         LNP+  L LFK+++ +DCE++
Sbjct: 183  FRWIGKKPTPEKELWDQEFNLVFDRNPELERFAKRVHEDLNPLKTLNLFKQISPSDCELI 242

Query: 107  YLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
             +      RPE  I   +  PP+ IRPSV+MD +QSNE+D+T +L  I+ T++ ++  + 
Sbjct: 243  GIDSARGGRPEMYIWRYLPAPPVCIRPSVMMD-AQSNEDDLTVKLTEIVWTSSLIRAGIE 301

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPF------SMQVARPLSGFVQRLKGKQGRF 216
            +  S    +  W+ LQ+ VA YINSD              + A+P+ GF QRLKGKQGRF
Sbjct: 302  KGISINNLMEQWDYLQLSVAMYINSDSANPALLPNAGAGAKSAKPIRGFCQRLKGKQGRF 361

Query: 217  RGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGP 276
            RGNLSGKRV+++GRTVISPDPNLKI EVA+P R+A++LTYPE+ + +N +KL++ I+ GP
Sbjct: 362  RGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNFKKLQKLIRAGP 421

Query: 277  DKYPGARMIRYPDGTA-RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMS 335
            D +PGA  I   +  A R L    R  LA  L+ G +V+RH+EDGDVVLFNRQPSLHR+S
Sbjct: 422  DVHPGANYIMKQNELAKRNLRFGNREILAKNLRIGDVVERHIEDGDVVLFNRQPSLHRLS 481

Query: 336  IMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTP 395
            I+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TP
Sbjct: 482  ILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTP 541

Query: 396  KNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELW 455
            K+GE ++A+TQDF+T S+LI+ KD+F+DRA+F  +   M D   + DLP P I KPV LW
Sbjct: 542  KSGEPIIAATQDFITGSYLISHKDSFFDRASFVQLLSMMSDADVQFDLPPPTIFKPVMLW 601

Query: 456  TGKQLFSVLIRPHANMRVYVNLTVKEKTY--SNKLIRTEGDEEIRIETMCPNDGFVYFRN 513
            TGKQ+FS+LI+P+    V +NL  K KT+    K + +E         M PNDGFV  R 
Sbjct: 602  TGKQVFSLLIKPNKKSNVIINLDAKNKTFIPPAKGLPSE---------MSPNDGFVIIRG 652

Query: 514  SELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDD 573
            S+++SG + K+TLG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI+D
Sbjct: 653  SQILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAASAMNRMAKLCARYLGNRGFSIGIND 712

Query: 574  VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRED 633
            V P+ +L  KK  ++ + Y  C+  I  YN GKL+ +PGC+  QTLEA I  +L+++RE+
Sbjct: 713  VTPETKLKQKKELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREE 772

Query: 634  AGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFP 693
             G+ C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF 
Sbjct: 773  VGEECIRELDSMNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFT 832

Query: 694  RKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDL 753
            + +K P +KGFV NSFYSGL+  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDL
Sbjct: 833  KNSKTPQSKGFVRNSFYSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDL 892

Query: 754  SIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLS 813
            S QYDN+VRN+   IVQF YG DG+DP +MEG + +P+NF+R             +  L 
Sbjct: 893  SAQYDNTVRNSSNGIVQFTYGGDGLDPYDMEGDA-KPVNFNRQWDHAYNLTYDGDETGLL 951

Query: 814  PQQVSEIV-------EKQLAAY---GKE---------------SCSEAFLNSLRKFFEGQ 848
            P ++  +V       E +L  Y   G+E                    F  SLR F   +
Sbjct: 952  PYEIKRLVDSILTPLESKLIRYDNLGRELADADQDRIEYIDQNDAEREFYQSLRDFLGKK 1011

Query: 849  QDKLDKK----------IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYR 898
             +KL +            K   ++  D+    L  + ++   I+ K +E F++ C  +Y 
Sbjct: 1012 AEKLARLREAKGLQPFFTKIESEMSVDEDEVKLNSI-NQLLKISSKTVEKFLEQCLYKYS 1070

Query: 899  VKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTP 958
              RVE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K ISTP
Sbjct: 1071 RARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKTISTP 1130

Query: 959  IITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLC 1018
            II A L  +D+E AARVVKGRIEKTLL  VA  I+ V    LA + I +D+ETI    L 
Sbjct: 1131 IINAVLVNDDDEIAARVVKGRIEKTLLEDVAFFIEDVYKDNLAYLSIKIDLETIDKLQLE 1190

Query: 1019 INADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD------------KSKIHFELYS 1066
            +  D +  +I   PK+K+    + V    ++ +   +             K+ + F +  
Sbjct: 1191 LTIDNIVRAIQNAPKLKITPGDVSVSGKDRVNVLVNLKEKTDSLKSQAETKNALFFRMQQ 1250

Query: 1067 LKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDG 1126
            LK  LP + +KG+  + R VI  ++  K++           LLVEG GL+ VM  +G+ G
Sbjct: 1251 LKRALPSICIKGLPNIFRAVINIRDDSKKE-----------LLVEGYGLKDVMSTDGVVG 1299

Query: 1127 CKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGI 1186
             KT +NH+ EV + LGIEAAR  II EI+ TM  HGMS+D RH+ LL D+MT++GEVLGI
Sbjct: 1300 TKTTTNHVLEVFEILGIEAARSSIIKEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGI 1359

Query: 1187 TRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            TRFG+ KM  SVL LASFEKT DHLF+A+   ++D+IEGVSECII+G  M +GTG  K+
Sbjct: 1360 TRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKIEGVSECIILGQTMSIGTGSFKL 1418


>gi|358060144|dbj|GAA94203.1| hypothetical protein E5Q_00851 [Mixia osmundae IAM 14324]
          Length = 1436

 Score = 1163 bits (3008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1275 (48%), Positives = 833/1275 (65%), Gaps = 68/1275 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVT- 59
            +R P ++  ++   +K +V      A KA+ CP CG ING VKKA   L IIH++ +   
Sbjct: 159  LRRPNLDNTQRDRFLKEVV----ATAKKALNCPHCGSINGTVKKA-GSLKIIHEKYRARK 213

Query: 60   -----ESL-QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---E 110
                 E+  Q F  A+  TKE K +++ A   LNP+  L LF+ +T+ DCE+L L     
Sbjct: 214  MKPAREAFEQSFDHALQDTKELKGSISRAQDDLNPLRALKLFECITNPDCELLGLDATIS 273

Query: 111  RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
            RPE  I   + VPP+ IRPSV  D + +NE+D+T +L  I+ TN  ++  L +       
Sbjct: 274  RPETFIWQYLLVPPVTIRPSVQQDDA-TNEDDLTVKLAEIVFTNQLIKSGLAKGIQTNVF 332

Query: 171  LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
            +  W+ LQ  VA YINSDV     S Q  +P+ G  QRLKGKQGRFRGNLSGKRV+++ R
Sbjct: 333  MEQWDFLQHAVATYINSDVNNNTISGQ--KPMRGLCQRLKGKQGRFRGNLSGKRVDFSAR 390

Query: 231  TVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA-RMIRYPD 289
            TVISPDPNL+I EVA+P ++A+ILTYPERV+ HN+E+LR+ ++NG + +PGA  +I    
Sbjct: 391  TVISPDPNLRIDEVAVPEKVAKILTYPERVTSHNLEQLRKAVRNGKEVHPGACYVISAAT 450

Query: 290  GTARVLYGKFRN--QLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
            G  + L  K+ N  +LA +L+ G +V+RHL D D+VLFNRQPSLH++SIM HR ++ PWR
Sbjct: 451  GIKKDL--KYGNPIELAKQLRIGDVVERHLRDDDIVLFNRQPSLHKLSIMSHRVKVRPWR 508

Query: 348  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQD 407
            T R NE VC PYNADFDGDEMN+HVPQTEEARTEA  LM ++ NL TP+NGE ++A+TQD
Sbjct: 509  TFRLNECVCTPYNADFDGDEMNLHVPQTEEARTEAAHLMSIKQNLVTPRNGEPIIAATQD 568

Query: 408  FLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRP 467
            F+T +FL++R+D F +RA    + CY+ D    ++LP P IL+P +LWTGKQ+FSVL+RP
Sbjct: 569  FITGAFLLSRRDKFLNRAEIGQILCYLTDAEGDLELPPPTILRPKQLWTGKQVFSVLMRP 628

Query: 468  HANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLG 527
             +   + VNL  K +T+       E         M PNDG++   NS ++ G L KAT+G
Sbjct: 629  SSRSSICVNLEAKCRTF-------EAPPAGYAPDMSPNDGYLVIENSVIMCGALDKATVG 681

Query: 528  NGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKL 587
            +G K+ ++ VLLRDYGA A +  MNRL+KL ARW+ N GFSIGI DV P  +L D+K   
Sbjct: 682  DGKKNSVFGVLLRDYGADAAAQAMNRLSKLCARWLTNQGFSIGISDVTPGDKLRDEKDDR 741

Query: 588  ISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNS 647
            I + YE  N+ I +   GKL+   GCD  QTLEA I+ +L+R+R+  G+ CM  L   N+
Sbjct: 742  IRKAYEESNLLITQAAHGKLENAAGCDQDQTLEASISGVLSRVRDKVGEICMTELSRNNA 801

Query: 648  PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVAN 707
            PLIM+ CGSKGS IN+ QMVACVGQQ   G+R  +GFI+RSLPH+ +K+K P +KGFV N
Sbjct: 802  PLIMAICGSKGSKINVCQMVACVGQQITNGKRVADGFINRSLPHYLKKSKNPPSKGFVRN 861

Query: 708  SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
            SFYSGL+ATEFFFH + GREGLVDTAVKTA+TGYM RRL+KALEDLS +YD SVR++ G 
Sbjct: 862  SFYSGLTATEFFFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLSTRYDLSVRSSTGS 921

Query: 768  IVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPA-GQRYLSPQQVSEIVEKQLA 826
            IVQF+YG+DG+DPA MEG  G P+ F R    ++AT P     + L P  + E+ ++ LA
Sbjct: 922  IVQFMYGNDGLDPAYMEG-DGSPVEFVRTWQHIRATVPHTKTSKPLMPYAILELTDRLLA 980

Query: 827  AYGKESCSEA-FLNSLRKF----FEGQQDKLDKKIKFVEDI----GWDDKSQILE----- 872
                +    + F   ++ F          +  +    +E +     WDD++ +       
Sbjct: 981  TDRFDMTRHSDFPAQIKAFVVKHIVAPAARFRRAYGMIEALEKHEEWDDETDLTGLAGPK 1040

Query: 873  --EVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHF 930
               V  + +  TE Q+  F+  C+ +Y    VE GTA+GAIGAQSIGEPGTQMTLKTFHF
Sbjct: 1041 AVHVVDQKTKTTEDQIARFLLLCWEKYARSMVEPGTAVGAIGAQSIGEPGTQMTLKTFHF 1100

Query: 931  AGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQV 988
            AGVASMN+T GVPRIKEIIN +K ISTPIITAEL  +   +E +ARV+K RIEKT LG++
Sbjct: 1101 AGVASMNVTLGVPRIKEIINASKVISTPIITAELLSDLAQSEASARVIKARIEKTYLGEI 1160

Query: 989  AKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRK 1048
            A  +   +T+  A + I +DM+T+    L +    +  SI+   K+KL + ++      +
Sbjct: 1161 ASQMAPTVTATQAYVNIQIDMDTVSRLQLEVTPHSIAASILAA-KLKLGKGNVSASHSGR 1219

Query: 1049 LEIFPPVD------KSKIHF--ELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKEN 1100
            + I+ P D       S  H    L +L  +LP V+VKG+    R VI        +VK+ 
Sbjct: 1220 IRIYLPDDDGSESTSSAPHKLDRLNTLCRLLPNVVVKGVGACSRAVI--------QVKQG 1271

Query: 1101 GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKA 1160
              K+K+ LLVEG GL+ VM  +G+DG +  SNHI EV + LGIEAAR  II+EI  TM A
Sbjct: 1272 SSKEKH-LLVEGNGLREVMTTDGVDGRRVTSNHIMEVVKVLGIEAARQTIINEIGGTMGA 1330

Query: 1161 HGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRD 1220
            HG+S+D RH+ LL D+MT +GEVLGITRFG+ K+  S LMLASFEKT DHLF+A+V  R 
Sbjct: 1331 HGLSVDPRHLGLLGDVMTCKGEVLGITRFGVAKLKDSTLMLASFEKTTDHLFDAAVYSRQ 1390

Query: 1221 DRIEGVSECIIMGIP 1235
            D I+G+SE IIMG+P
Sbjct: 1391 DDIDGISESIIMGLP 1405


>gi|448520288|ref|XP_003868270.1| Rpo31 protein [Candida orthopsilosis Co 90-125]
 gi|380352609|emb|CCG22836.1| Rpo31 protein [Candida orthopsilosis]
          Length = 1443

 Score = 1162 bits (3007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/1331 (47%), Positives = 845/1331 (63%), Gaps = 129/1331 (9%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHDR 55
            +R P ++ L++  ++K I  +C     K  +C +C ++NG+VKKA      A L I+HD 
Sbjct: 128  LRRPNIDNLKRMKILKKINDQCK----KQRRCLKCNHVNGVVKKAASGAGPASLKIVHDT 183

Query: 56   S----------------------KVTESLQEFASAITHTKESKAAVNVATYILNPVNVLF 93
                                   K    L++FA  I                 NP+  L 
Sbjct: 184  FRWIGKKDTPEKTVWDEDLDLVFKRNPDLEKFAKRIQED-------------FNPLKTLN 230

Query: 94   LFKRMTDTDCEVLYLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKR 149
            LFK++   DCE+L +      RPE  I   +  PP+ IRPSV+MD +QSNE+D+T +L  
Sbjct: 231  LFKQIIPEDCELLGMDASKGGRPEMYIWRYLPAPPVCIRPSVMMD-AQSNEDDLTVKLTE 289

Query: 150  IIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM--------QVARP 201
            I+ T++ ++  + +  S    +  W+ LQ+ VA YINSD    P  M        + A+P
Sbjct: 290  IVWTSSMIKAGIAKGISINNLMEQWDYLQLSVAMYINSDAAN-PALMSGGGGGGSKSAKP 348

Query: 202  LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
            + GF QRLKGKQGRFRGNLSGKRV+++GRTVISPDPNLKI EVA+P R+A++LTYPE+ +
Sbjct: 349  IRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCT 408

Query: 262  DHNIEKLRQCIQNGPDKYPGARMI-RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
             +N +KL+  I NGPD +PGA  + +  +   R L    R +LA  L+ G +V+RH+EDG
Sbjct: 409  RYNKKKLQCLIINGPDVHPGANYVMKQNEAGKRNLRFGDRVKLAKSLQIGDVVERHIEDG 468

Query: 321  DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
            DVVLFNRQPSLHR+SI+ H A++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR 
Sbjct: 469  DVVLFNRQPSLHRLSILAHYAKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARA 528

Query: 381  EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
            EA+ LMGV+NNL TPK+GE ++A+TQDF+T S+LI+ KD+F+DRA+   +   M D   +
Sbjct: 529  EAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRASLVQLLSMMSDADIQ 588

Query: 441  VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS--NKLIRTEGDEEIR 498
             D+P PAI+KPV LWTGKQ+FS+LI+P+   +V +NL  K KT+    K + +E      
Sbjct: 589  FDIPPPAIMKPVMLWTGKQVFSLLIKPNRQSKVVINLNAKNKTFHPPAKGLPSE------ 642

Query: 499  IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
               M PNDGFV  R S+++SG + K+TLG+G K  ++  +LRDYG    +  MNR+AKL 
Sbjct: 643  ---MSPNDGFVLIRGSQILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLC 699

Query: 559  ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
            AR++GN GFSIGI+DV P  EL  KK  ++ + Y  C+  I  YN GKL+ +PGC+  QT
Sbjct: 700  ARFLGNRGFSIGINDVTPAHELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQT 759

Query: 619  LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            LEA I  +L+++RE+ G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G 
Sbjct: 760  LEAKIGGLLSKVREEVGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGH 819

Query: 679  RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
            R P+GF DRSLPHF + +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKTA+
Sbjct: 820  RVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAE 879

Query: 739  TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
            TGYMSRRL+K+LEDLS QYDN+VRN+   IVQF YG DG+DP +MEG + +P+NF R   
Sbjct: 880  TGYMSRRLMKSLEDLSSQYDNTVRNSSNGIVQFTYGGDGLDPYDMEGDA-KPVNFVRQWD 938

Query: 799  KVKATCPPAGQRYLSPQQVSEIVEK-------QLAAYGKE-----------SCSEAFLNS 840
                       + L P +++E+ +K       +LA    E               AF  S
Sbjct: 939  HAYNVTYNVNDKPLLPYEINELADKTLKPLVDKLAVVSDEVQNKDELVDQKDAERAFYES 998

Query: 841  LRKFFEGQQDKLDKKIKFVEDIGW--------DDKSQILEE-----VTHKTSGITEKQLE 887
            +R+F    +DK +   +  E  G         +D  Q+ E+       ++   I+ +  +
Sbjct: 999  VREFL---RDKAETLARLRESRGLQAFYTRVNEDDIQLDEDEAKINAVNQLLKISHRAAK 1055

Query: 888  VFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKE 947
             F++ C  +Y   +VE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKE
Sbjct: 1056 EFMKQCLYKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKE 1115

Query: 948  IINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIAL 1007
            IIN +K ISTPII A L  +D+E AARV KGRIEKTLL  VA  I+ V    +A + I +
Sbjct: 1116 IINASKTISTPIINAVLVNDDDEIAARVAKGRIEKTLLKDVAFYIEDVYKDNMAYLAIKV 1175

Query: 1008 DMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK-------- 1059
            D+ETI    L +  D + ++I + PK+K+    + +    ++ +   V++SK        
Sbjct: 1176 DLETIDKLQLELTIDNIAQAICKAPKLKIAPSDVIITGKNRINVLCNVNESKSESLKSAS 1235

Query: 1060 -----IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTG 1114
                 + F + +LK VLP + +KG+  + R VI         +K++G+K+   LLVEG G
Sbjct: 1236 DSLNALFFRMQTLKRVLPDICIKGLPNIFRAVI--------NIKDDGKKE---LLVEGYG 1284

Query: 1115 LQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLA 1174
            L+ VM  EGI G KT +NH+ EV + LGIEAAR  II EI+ TM  HGMS+D RH+ LL 
Sbjct: 1285 LKDVMNTEGIVGTKTTTNHVLEVNEILGIEAARGSIIREIDYTMSNHGMSVDPRHIQLLG 1344

Query: 1175 DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGI 1234
            D+MT++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D+IEGVSECII+G 
Sbjct: 1345 DVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKKDKIEGVSECIILGK 1404

Query: 1235 PMPLGTGILKI 1245
             M +GTG  K+
Sbjct: 1405 TMSVGTGAFKL 1415


>gi|427798211|gb|JAA64557.1| Putative rna polymerase i large subunit, partial [Rhipicephalus
            pulchellus]
          Length = 1429

 Score = 1162 bits (3007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/1304 (48%), Positives = 833/1304 (63%), Gaps = 73/1304 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P    L K  L K IV+ C   AS    CP CG +NG VKK   +L  +++R K   
Sbjct: 129  VQRPSTSFLTKKSLHKKIVEICRKQAS----CPFCGVVNGQVKKC-GLLKFVYERYKAHK 183

Query: 58   ----VTESLQE-FASAITHTKESKAAVN-VATYILNPVNVLFLFKRMTDTDCEVLYLSER 111
                V + LQ+ +  A ++  E  + +N V + ILNP+ V  L +R+ D D  +L ++ R
Sbjct: 184  KNEGVIKDLQDDYQEARSYNNEIDSVINKVTSDILNPLVVRDLLRRIPDEDVPLLLMNTR 243

Query: 112  ---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               PE L++T+I VPP+ IRPSV+    + +NE+D+T +L  II  N  LQ+        
Sbjct: 244  CGRPEDLVLTHIPVPPLCIRPSVVSALKAGTNEDDVTVKLTEIIFLNDVLQKHRTNGGKM 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A Y+NS+  G+P +MQ  +P  GFVQRLKGK GRFRGNLSGKRV++
Sbjct: 304  SMIMEDWDFLQLQCALYVNSETSGIPLNMQPKKPTRGFVQRLKGKHGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIR- 286
            +GRTVISPDPNL+I EV +P  +A+ILTYPERV+ HNIE +RQ I+NG D +PGA  +  
Sbjct: 364  SGRTVISPDPNLRIDEVGVPEHVAKILTYPERVTQHNIELMRQLIRNGCDVHPGANFLEC 423

Query: 287  YPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW 346
               G  R L    R QLA +L+ G +V+RHL+DGDVVLFNRQPSLH++SIM H A+++P 
Sbjct: 424  RGTGIKRYLRYGNREQLAQQLRLGDMVERHLKDGDVVLFNRQPSLHKLSIMAHVAKVLPH 483

Query: 347  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQ 406
            RT RFNE VC PYNADFDGDEMN+H+PQTEEAR EAL+LMG + NL TP+NGE L+A+ Q
Sbjct: 484  RTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALILMGTRANLVTPRNGEPLIAAIQ 543

Query: 407  DFLTSSFLITRKDTFYDR-AAFSLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFSV 463
            DF+T  +LIT+KD F DR  A  L  C +   D   +V+LP PAILKPV LWTGKQ+FS+
Sbjct: 544  DFITGGYLITQKDVFLDRIKACQLASCMLAGKDTNMKVELPPPAILKPVCLWTGKQIFSL 603

Query: 464  LIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGK 523
            ++RP  +  V   L  K K+Y      T G+E      MC ND +V  RNSEL+SG + K
Sbjct: 604  IMRPSRSSPVMACLRAKGKSY------TSGEE------MCVNDAYVLIRNSELLSGTMDK 651

Query: 524  ATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK 583
             T+G+G+K+ ++ +LLRDYG    +  M RL +L+A +I N GFSIGI DV P   L   
Sbjct: 652  GTMGSGSKNNIFYILLRDYGDQYAADAMWRLVRLTAYYIQNRGFSIGIGDVTPGAGLIKA 711

Query: 584  KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLP 643
            K  L+S  Y  C   I++   GKLQ +PGC+  +TLEAV    L+ +R+ AGKAC+  L 
Sbjct: 712  KQDLVSAGYARCEEYIQQLKCGKLQAQPGCNEEETLEAVCLKELSVVRDHAGKACLRELH 771

Query: 644  WRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKG 703
              NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R PNGF DRSLPHF +  + P A+G
Sbjct: 772  KTNSPLIMAVCGSKGSFINISQMIACVGQQAISGHRVPNGFEDRSLPHFEKHDRSPQARG 831

Query: 704  FVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRN 763
            FV +SFYSGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K+LEDL   YD SVRN
Sbjct: 832  FVEDSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCCHYDRSVRN 891

Query: 764  AGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEK 823
            + G +VQF YG DG+DPA+MEGK  +P++F R++   +A      +  L    + ++ ++
Sbjct: 892  SCGEVVQFCYGADGLDPASMEGKDDKPVDFGRVMEVTRARNTHRNEPPLDMDGILQLSKE 951

Query: 824  QLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITE 883
             L       C E+F N L  F       + +     +    D        V  + + +T 
Sbjct: 952  ILGGEDMSVCGESFRNDLEAFLTTYAKGVAETYTLYKVKERDIP------VLKQLNRLTA 1005

Query: 884  KQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVP 943
             QL  F  TC  +Y    +E  TA+GA+ AQSIGEP TQMTLKTFHFAGVASMNITQGVP
Sbjct: 1006 SQLRSFFDTCREKYLRSVMEPATAVGAVCAQSIGEPATQMTLKTFHFAGVASMNITQGVP 1065

Query: 944  RIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASI 1003
            RIKEIIN +K ISTPIITA L  + +   AR VKGRIEKTLLG+V++ ++ V       +
Sbjct: 1066 RIKEIINASKNISTPIITAALMNDTDAEYARRVKGRIEKTLLGEVSEYLEEVFLPDDCFV 1125

Query: 1004 VIALDMETIQDAHLCINADIVKESI-VQTPKIKLKQQHIKVLDFRKLEIFPPV-DKSKIH 1061
            ++ LD++ I+   L + AD ++ SI +   K+++K + IK +    L I P    K+ ++
Sbjct: 1126 LVKLDIDRIRLLQLEVTADTIRYSISLYKTKLRIKNEDIKAIGTSLLTIRPNASSKTSLY 1185

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKE----------------------------KE 1093
            + L +L   LP +++KGI +  R VI   +                              
Sbjct: 1186 YSLQNLMEQLPKIVIKGIPSSSRAVIHADDSLGGTRYRLLXLQNLMEQLPKIVIKGIPSS 1245

Query: 1094 KRKVKENGEK---KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICI 1150
             R V    +     +YRLLVEG GL+ V+   G+ G KT SN+  EV++TLGIEAAR  I
Sbjct: 1246 SRAVIHADDSLGGTRYRLLVEGDGLRDVIATYGVKGIKTSSNNTSEVEKTLGIEAARTTI 1305

Query: 1151 IDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADH 1210
            I EI  TM+ HG+S+D+RH+MLLADLMTFRGEVLGITR G+ +M +S LMLASFEKTADH
Sbjct: 1306 IREIGVTMQNHGISVDRRHLMLLADLMTFRGEVLGITRHGLARMKESALMLASFEKTADH 1365

Query: 1211 LFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAVPPM 1254
            LF+A+  G+ D I GVSE II+G+PM +GTG   +  +    P+
Sbjct: 1366 LFDAAYYGQTDEISGVSESIILGVPMAIGTGFFDLVHKVDWQPL 1409


>gi|190347890|gb|EDK40245.2| DNA-directed RNA polymerase III largest subunit [Meyerozyma
            guilliermondii ATCC 6260]
          Length = 1379

 Score = 1162 bits (3006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1329 (47%), Positives = 841/1329 (63%), Gaps = 102/1329 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHDR 55
            +R P ++ LR+   +K +V +C     K  +C RC +ING+VKKA      A L I+HD 
Sbjct: 57   LRRPGIDNLRRMKTLKKVVDQCK----KQRRCLRCYHINGVVKKAASGSGPAALKIVHDT 112

Query: 56   SKVTESL---------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +              QEF        E +         LNP+ VL LFK++T  DCE+ 
Sbjct: 113  FRWVGKKSAPEKDAWDQEFDEVFARNPEVEKFAKRVHDDLNPLKVLNLFKQITPQDCELF 172

Query: 107  YLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
             +      RPE  I   +  PP+ IRPSV+MD +QSNE+DIT +L  I+ T++ ++  + 
Sbjct: 173  GIDASRGGRPEMYIWRYLPAPPVCIRPSVMMD-AQSNEDDITVKLTEIVWTSSLIKAGIE 231

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPF--SM----QVARPLSGFVQRLKGKQGRF 216
            +  S    +  W+ LQ+ VA YINSD        SM    + A+P+ GF QRLKGKQGRF
Sbjct: 232  KGISINNLMEQWDYLQLSVAMYINSDAANPALLPSMSGGAKSAKPIRGFCQRLKGKQGRF 291

Query: 217  RGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGP 276
            RGNLSGKRV+++ RTVISPDPNL+I EVA+P R+A++LTYPE+ + +N +KL+Q I NGP
Sbjct: 292  RGNLSGKRVDFSARTVISPDPNLRIDEVAVPDRVAKVLTYPEKCTRYNRKKLQQLILNGP 351

Query: 277  DKYPGARMI-RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMS 335
            D +PGA  + +  +   R L    + +LA  L  G +V+RH+EDGDVVLFNRQPSLHR+S
Sbjct: 352  DVHPGANYVMKQNEAAKRNLRFGDKVKLAKNLHVGDVVERHIEDGDVVLFNRQPSLHRLS 411

Query: 336  IMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTP 395
            I+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TP
Sbjct: 412  ILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTP 471

Query: 396  KNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELW 455
            K+GE ++A+TQDF+T S+LI+ KD+FYDRA F  +   M D   + DLP P I KPV LW
Sbjct: 472  KSGEPIIAATQDFITGSYLISHKDSFYDRATFIQLLSMMSDADLQFDLPPPTIFKPVMLW 531

Query: 456  TGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSE 515
            TGKQ+FS+L++P+ N  V VNL  K K ++        +       M PNDG+V  R S+
Sbjct: 532  TGKQVFSLLMKPNKNSNVIVNLDAKNKAFTPPAPGYPNE-------MSPNDGYVIIRGSQ 584

Query: 516  LISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQ 575
            ++SG + K+TLG+G K  ++  +LRD+G  A +  MNR+AKL AR++GN GFSIGI+DV 
Sbjct: 585  VLSGVMDKSTLGDGKKHSVFYTILRDFGPDAAAEAMNRMAKLCARYLGNRGFSIGINDVT 644

Query: 576  PKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAG 635
            P  +L  KK  ++ + Y  C+  I  YN GKL+ +PGC+  QTLEA I  +L+++RE  G
Sbjct: 645  PGTDLKRKKELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREQVG 704

Query: 636  KACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRK 695
            + C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF + 
Sbjct: 705  EVCINELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKN 764

Query: 696  AKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI 755
            +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS 
Sbjct: 765  SKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSA 824

Query: 756  QYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQ 815
            QYDN+VRN+   IVQF YG DG+DP +MEG +  P+NF R                L P 
Sbjct: 825  QYDNTVRNSSNGIVQFTYGGDGLDPFDMEGDA-RPVNFARQWSHAYNVTYDVNDLGLLPY 883

Query: 816  QVSEI-------VEKQLAAYGK--------ESCSEAFL---NSLRKFFEGQQDKLDKKIK 857
            ++ +        +E +L  Y          E+ SE F+   ++ R F++  ++ + +K  
Sbjct: 884  KILQATDDVLAPLEAKLIRYDNLGQPVTEGEADSEEFIDQNDAERAFYKSIREFVSEKAS 943

Query: 858  FVEDI--------GW------DDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVE 903
             + +I        GW      DD  Q+     ++ S I+ K +  F+  C  +Y   +VE
Sbjct: 944  QLAEIRQSKNLKSGWSRPASKDDPVQL--NAVNQLSKISLKAINKFLDQCIYKYSRAKVE 1001

Query: 904  AGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAE 963
             GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K ISTPII   
Sbjct: 1002 PGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINGV 1061

Query: 964  LECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADI 1023
            L  +D+E AARVVKGRIEKTLL  VA  I+ V    LA + + +D++TI+   L +  + 
Sbjct: 1062 LVNDDDEIAARVVKGRIEKTLLEDVAFFIEDVYKDNLAYLSVKIDLDTIEKLQLELTIES 1121

Query: 1024 VKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK-------------------IHFEL 1064
            +  +IV  PK+K+    + +    ++ +   + ++K                   + F +
Sbjct: 1122 IAHAIVTAPKLKIVASDVSIAGRDRINVLVTLRETKADLLKNMADDYRASDSTNSLFFRM 1181

Query: 1065 YSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGI 1124
              LK  LP V +KG+  + R VI         +K+NG+K+   LLVEG GL+ VM  +GI
Sbjct: 1182 QQLKRALPSVCIKGLPEISRAVI--------NIKDNGKKE---LLVEGYGLKQVMSTDGI 1230

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
             G KT +NH+ EV + LGIEAAR  II EI+ TM  HGMS+D RH+ LL D+M+++GEVL
Sbjct: 1231 IGTKTTTNHVLEVFEVLGIEAARASIIGEIDYTMSKHGMSVDPRHIQLLGDVMSYKGEVL 1290

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
            GITRFG+ KM  SVL LASFEKT DHLF+A+   + D+IEGVSECII+G  M +GTG  +
Sbjct: 1291 GITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDQIEGVSECIILGQTMSIGTGAFQ 1350

Query: 1245 IRQRDAVPP 1253
            + +     P
Sbjct: 1351 LVKSSPYEP 1359


>gi|50293727|ref|XP_449275.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528588|emb|CAG62249.1| unnamed protein product [Candida glabrata]
          Length = 1459

 Score = 1160 bits (3002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 630/1326 (47%), Positives = 845/1326 (63%), Gaps = 104/1326 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAV-----LGIIHDR 55
            +R P ++ LR+  L+K ++ +C     K  +C  CG +NG+VKKA A      L IIHD 
Sbjct: 127  LRRPGVDNLRRMALLKKVLDQCK----KQRRCLHCGALNGVVKKAAAGAGTASLKIIHDT 182

Query: 56   SKVT---------ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +           + + ++   ++H  E +  V  AT  LNP+  L LFK++   DCE+L
Sbjct: 183  FRWVGKKSTPEKDKWIGDWKEVLSHNPELERYVKRATDDLNPLKTLNLFKQIASEDCELL 242

Query: 107  YLSE-----RPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
             +       RPE  I   I  PP+ IRPSV+M D   SNE+D+T +L  I+ T++ ++  
Sbjct: 243  GIDATNKAGRPETYIWRYIPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAG 302

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSD------VRGVPFSMQVARPLSGFVQRLKGKQG 214
            + +  S    +  W+ LQ+ VA YINSD      + G        +P+ GF QRLKGKQG
Sbjct: 303  IEKGISINNMMEHWDYLQMTVAMYINSDSINPAMLPGSSTGGGKVKPIRGFCQRLKGKQG 362

Query: 215  RFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQN 274
            RFRGNLSGKRV+++GRTVISPDPNL I EVA+P  +A++LT+PE+V+ +NI+KLRQ +QN
Sbjct: 363  RFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPQLVAKVLTFPEKVTRYNIKKLRQLVQN 422

Query: 275  GPDKYPGARMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
            GP+ +PGA  +   +  AR  + YG  R +LA  L+ G +V+RHLEDGDVVLFNRQPSLH
Sbjct: 423  GPNVHPGANYLLKKNEEARRNLRYGD-RQKLANNLQYGDVVERHLEDGDVVLFNRQPSLH 481

Query: 333  RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
            R+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL
Sbjct: 482  RLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 541

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
             TPK+GE ++A+TQDF+T S+LI+ KD+F+D+A+ + +   M DG  + D+P PAI+KP 
Sbjct: 542  LTPKSGEPIIAATQDFITGSYLISHKDSFFDKASLTQLLSMMSDGSLQFDIPPPAIMKPC 601

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFR 512
             LWTGKQ+FS+LI+P+ N  V +NL  K K Y     +   +E      M  NDGFV  R
Sbjct: 602  YLWTGKQVFSLLIKPNKNSPVKINLDAKNKVYIPPKQKHYPNE------MSQNDGFVIVR 655

Query: 513  NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
             S+++SG + K+ LG+G K  ++  +LRD+G    +  MNR+AKL AR++GN GFSIGI 
Sbjct: 656  GSQILSGVMDKSVLGDGKKHSVFYTILRDFGPQEAASAMNRMAKLCARYLGNRGFSIGIS 715

Query: 573  DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
            DV P  +L  KK  L+   Y  C+  I  YN+GKL+ +PGC+  QTLEA I  +L+++RE
Sbjct: 716  DVTPADDLKQKKEDLVEIAYAKCDELIDLYNKGKLETQPGCNEEQTLEAKIGGLLSKVRE 775

Query: 633  DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
            + G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF
Sbjct: 776  EVGDVCINELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 835

Query: 693  PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
            P+ +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LED
Sbjct: 836  PKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 895

Query: 753  LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYL 812
            LS QYDN+VR +   IVQF YG DG+DP  MEG + +P+NF+R              R L
Sbjct: 896  LSCQYDNTVRTSSNGIVQFTYGGDGLDPLEMEG-NAQPVNFNRSWDHAYNITFNNTDRGL 954

Query: 813  SPQQVSEIV-------EKQLAAY---GKESCSE---------------AFLNSLRKFFEG 847
             P ++ + V       EK+L  Y   G+   +E                F  SLR+F   
Sbjct: 955  LPYEIKKTVDNILKPLEKRLIRYDTLGRPVSAEDDKLDDYVDQHDSERLFYASLREFMTD 1014

Query: 848  QQDK---------LDKKIKFVEDIGWDDKSQILEEVTHKT----SGITEKQLEVFIQTCF 894
            +  K         L K IK  E  G+D +++ ++ +   +      ITE  ++ F++   
Sbjct: 1015 KAKKLAKLRKSRGLPKLIKKSELEGYDPENEHIDAIVQHSITQLYRITEDAVQKFLEIAI 1074

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S+Y   +VE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K 
Sbjct: 1075 SKYHRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKV 1134

Query: 955  ISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQD 1014
            ISTPII A L  N++E AARVVKGRIEKTLL  V   I+ V    +A + + +D+ TI  
Sbjct: 1135 ISTPIINAVLVNNNDERAARVVKGRIEKTLLSDVCYYIQDVYKENMAYLQVKVDLNTIDK 1194

Query: 1015 AHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEI--FPPVDKSK------------- 1059
              L +  + +  +I + PK+K++   + VL   K+ I   P    SK             
Sbjct: 1195 LQLELTIEDIAIAITRAPKLKIQTSDVTVLGKDKIAINVLPEGFGSKTSSTSLKEPTEND 1254

Query: 1060 IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVM 1119
            + + + +L+  LP ++VKG+  + R VI  ++  KR+           LLVEG GL+ VM
Sbjct: 1255 VFYRMQTLRRALPSIMVKGLNDIARAVINIRDDGKRE-----------LLVEGYGLRDVM 1303

Query: 1120 GAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTF 1179
              +G+ G KT +NH+ E+   LGIEAAR  II EI+ TM  HGMS+D RH+ LL D+MTF
Sbjct: 1304 CTDGVIGAKTATNHVLEIFNVLGIEAARASIIGEIDYTMSNHGMSVDPRHIQLLGDVMTF 1363

Query: 1180 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLG 1239
            +GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSECII+G  M +G
Sbjct: 1364 KGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIG 1423

Query: 1240 TGILKI 1245
            TG  K+
Sbjct: 1424 TGSFKV 1429


>gi|406607118|emb|CCH41506.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
          Length = 1457

 Score = 1160 bits (3002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 630/1326 (47%), Positives = 857/1326 (64%), Gaps = 105/1326 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-----VAVLGIIHDR 55
            +R P ++ LR+  ++K I+ +C     K  +C  CG +NG+VKKA      A L I+HD 
Sbjct: 127  LRRPGIDNLRRMGILKKILDQCK----KQRRCLDCGAVNGVVKKAAAGSGTASLKIVHDT 182

Query: 56   SKVT---------ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +           E  ++  +A+ +  + +         LNP+ VL LFK++   DCE++
Sbjct: 183  FRWIGKKPTIEKGEWDKDIETAVHNNPDIERFAKRCMDDLNPLKVLNLFKQVKPEDCELM 242

Query: 107  YLSE----RPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQEL 161
             +      RPE  I   +  PP+ IRPSV+M D   SNE+D+T +L  I+ T++ ++  +
Sbjct: 243  GIDSGRGGRPETYIWRYLPAPPVCIRPSVMMSDSPTSNEDDLTVKLTEIVWTSSLIRAGI 302

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSD------VRGVPFSMQVARPLSGFVQRLKGKQGR 215
             +  S    +  W+ LQ+ VA YINSD      + G   + + A+P+ G  QRLKGKQGR
Sbjct: 303  EKGISINNLMEQWDYLQLSVAMYINSDAASPAMLPGASAAAKSAKPIRGLCQRLKGKQGR 362

Query: 216  FRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNG 275
            FRGNLSGKRV+++GRTVISPDPNL+I EVA+P R+A++LTYPE  + +N EKL++ I NG
Sbjct: 363  FRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPDRVAKVLTYPETCTRYNKEKLQRLILNG 422

Query: 276  PDKYPGARMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHR 333
            P ++PGA  +   +  AR  + YG  RN+LA  L+ G +V+RHLEDGDVVLFNRQPSLHR
Sbjct: 423  PTEHPGANYLLKKNEDARRNLRYGD-RNKLAKNLQYGDVVERHLEDGDVVLFNRQPSLHR 481

Query: 334  MSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLC 393
            +SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL 
Sbjct: 482  LSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLL 541

Query: 394  TPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVE 453
            TPK+GE ++A+TQDF+T S+LI+ KD+F+DRA F+ +   M DG  + DLP PAI KPV 
Sbjct: 542  TPKSGEPIIAATQDFITGSYLISHKDSFFDRATFTQLLSMMSDGDLQFDLPPPAIHKPVY 601

Query: 454  LWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRN 513
            +WTGKQ+FS+LI+P+    V +NL  K K +      T   + + +E M PNDGFV  R 
Sbjct: 602  MWTGKQVFSLLIKPNKKSPVVINLDAKNKAF------TPPAKGLPME-MSPNDGFVIIRG 654

Query: 514  SELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDD 573
            S+++SG + K+TLG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI D
Sbjct: 655  SQILSGVMDKSTLGDGKKHSVFYTILRDYGPKEAATAMNRMAKLCARFLGNRGFSIGISD 714

Query: 574  VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRED 633
            V P   L + K +++   Y  C+  IK Y+EGKL+ +PGC+  QTLEA I  +L+++RE+
Sbjct: 715  VTPGVALKNTKEEMVEAAYAKCDELIKLYSEGKLETQPGCNEEQTLEAKIGGLLSKVREE 774

Query: 634  AGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFP 693
             G+ C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHFP
Sbjct: 775  VGEVCINELDSSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFP 834

Query: 694  RKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDL 753
            + +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDL
Sbjct: 835  KNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDL 894

Query: 754  SIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLS 813
            S QYDN+VR +   IVQF YG DG+DP +MEG + +P+NF+R             +R L 
Sbjct: 895  SCQYDNTVRTSSNGIVQFTYGGDGLDPFDMEGDA-KPVNFNRTWDHSYNVTLDVNERSLL 953

Query: 814  PQQVS-------EIVEKQLAAY--------GKES----------CSEAFLNSLRKFFEGQ 848
            P +V        + +EK+L  Y        GK++              F NS+R+FF  +
Sbjct: 954  PYEVIEVVEEVLQPLEKKLIRYDNLGNQLEGKDAEKIEFIDQNDAKRGFYNSIREFFASK 1013

Query: 849  QDKL-----DKKIKFVEDIGWDDKSQI-LEE--------VTHKTSGITEKQLEVFIQTCF 894
              +L      KK+    +   D+ +Q+ L+E          ++ + IT+K ++ F+    
Sbjct: 1014 AARLARVREQKKLHGYLEKPADESAQMDLDEGSSEAALTAVNQLAKITKKCVKKFLDITL 1073

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
             +Y   +VE GTA+GAI A SIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K 
Sbjct: 1074 IKYSRAQVEPGTAVGAIAAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKV 1133

Query: 955  ISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQD 1014
            ISTPII A L  +D+E AARVVKGR+EKTLL  +   I+ V    ++ I + +D++TI+ 
Sbjct: 1134 ISTPIINAVLVNDDDERAARVVKGRVEKTLLSDIVYYIQDVYKDDMSYIQVKVDLKTIEK 1193

Query: 1015 AHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEI--FPPVDKSK------------- 1059
              L +  D +  +I + PK+K+    + V+   K+ I  FP   ++K             
Sbjct: 1194 LQLELTMDDIAVAISRAPKLKIPGGDVSVVGRNKININVFPEGARAKSVSTSAKEPLENE 1253

Query: 1060 IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVM 1119
            + F +  L+  LP V VKG   + R VI         V+++G+K+   LLVEG GL+ VM
Sbjct: 1254 LFFRMQHLRRALPGVTVKGFPDIARAVI--------NVRDDGKKE---LLVEGYGLRDVM 1302

Query: 1120 GAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTF 1179
              +G+ G KTK+NHI EV Q LGIEAAR  II+EI+ TM  HGMS+D RH+ LL D+M++
Sbjct: 1303 CTDGVIGTKTKTNHILEVWQVLGIEAARGSIINEIDYTMSNHGMSVDPRHIQLLGDVMSY 1362

Query: 1180 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLG 1239
            +GEVLGITRFG+ KM  SVL LASFEKT DHLF+AS   + D +EGVSECII+G  M +G
Sbjct: 1363 KGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKSDAVEGVSECIILGQTMAIG 1422

Query: 1240 TGILKI 1245
            TG  K+
Sbjct: 1423 TGAFKL 1428


>gi|367014307|ref|XP_003681653.1| hypothetical protein TDEL_0E01990 [Torulaspora delbrueckii]
 gi|359749314|emb|CCE92442.1| hypothetical protein TDEL_0E01990 [Torulaspora delbrueckii]
          Length = 1460

 Score = 1160 bits (3002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1329 (47%), Positives = 838/1329 (63%), Gaps = 109/1329 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA-----VLGIIHD- 54
            +R P ++ LR+  ++  ++ +C     K  +C +CG +NG+VKKA A      L IIHD 
Sbjct: 127  LRRPGVDNLRRMGILSKVLDQCK----KQRRCLQCGALNGVVKKAAAGSGSASLKIIHDT 182

Query: 55   -----RSKVTES---LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
                 +  V E    + ++   ++H  E +  V      LNP+  L LFK++   DCE+L
Sbjct: 183  FRWAGKKSVPEKDKWVGDWDEVLSHNPELERYVKRCMDDLNPLKTLNLFKQLKPEDCELL 242

Query: 107  YL-----SERPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
             +     S RPE  I   +  PP+ IRPSV+M D   SNE+D+T +L  I+ T++ ++  
Sbjct: 243  GIDSSNKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKSG 302

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSD------VRGVPFSMQVARPLSGFVQRLKGKQG 214
            L +  S    +  W+ LQ+ VA YINSD      + G        +P+ GF QRLKGKQG
Sbjct: 303  LEKGISINNMMEHWDYLQLSVAMYINSDSVNPAMMPGASSGGGKVKPIRGFCQRLKGKQG 362

Query: 215  RFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQN 274
            RFRGNLSGKRV+++GRTVISPDPNL I EVA+P R+A++LTYPE+V+ +N +KL+Q + N
Sbjct: 363  RFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRQKLQQLLIN 422

Query: 275  GPDKYPGARMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
            GP+ +PGA  +   D  AR  + YG  R +LA  L+ G +V+RHLEDGDVVLFNRQPSLH
Sbjct: 423  GPNVHPGANYLLKKDEDARRNLRYGD-RVKLAKNLRVGDVVERHLEDGDVVLFNRQPSLH 481

Query: 333  RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
            R+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL
Sbjct: 482  RLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 541

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
             TPK+GE ++A+TQDF+T S+LI+ KD+F+DR + + +   M DG  + D+P PAI+KP 
Sbjct: 542  LTPKSGEPIIAATQDFITGSYLISHKDSFFDRGSLTQLLSMMSDGNLQFDIPAPAIMKPC 601

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFR 512
             LWTGKQ+FS+LI+P+    V +NL  K K +     ++   E      M  NDG+V  R
Sbjct: 602  YLWTGKQVFSLLIKPNKKSPVVINLDAKNKVFIPPKSKSLPSE------MSQNDGYVIIR 655

Query: 513  NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
             SE++SG + K+ LG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI 
Sbjct: 656  GSEILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARYLGNRGFSIGIS 715

Query: 573  DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
            DV P  +L  KK  ++   Y  C+  I  YN+GKL+ +PGC+  QTLEA I  +L+++RE
Sbjct: 716  DVTPADDLKKKKEDMVEFAYAKCDELIDSYNKGKLETQPGCNEEQTLEAKIGGLLSKVRE 775

Query: 633  DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
            + G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF
Sbjct: 776  EVGDVCINELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 835

Query: 693  PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
            P+ +K P +KGFV NSF+SGL+  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LED
Sbjct: 836  PKNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 895

Query: 753  LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYL 812
            LS QYDN+VR +   IVQF YG DG+DP  MEG + +P+NF R             +R L
Sbjct: 896  LSCQYDNTVRTSSNGIVQFTYGGDGLDPMEMEGNA-QPVNFVRSWNHAFNVTFNNTERGL 954

Query: 813  SPQQVSEIVEKQLAAY-------------------------GKESCSEAFLNSLRKFFEG 847
             P Q+ E  +K LA                            +      F  SL+ F  G
Sbjct: 955  FPYQIEEETDKILAPLMNRLIRYDNVGKLVPKEKDALIEYIDQNDAERNFYLSLKSFMRG 1014

Query: 848  Q-------------QDKLDKKIKFVEDIGWDDKSQILEEVTHKTSG---ITEKQLEVFIQ 891
            +             ++ LD+     ++I +D+   + E + H       IT   +  F++
Sbjct: 1015 KAELLASVRKQRGMKELLDEPGPEFKNIDFDE--DVPENIRHSVDQLCRITGDSVREFLK 1072

Query: 892  TCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIING 951
               S+YR  RVE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN 
Sbjct: 1073 IAISKYRRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINA 1132

Query: 952  AKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
            +K ISTPII A L  +++E AARVVKGRIEKTLL  VA  I+ V    L+ + + +D+ T
Sbjct: 1133 SKVISTPIINAVLVNDNDERAARVVKGRIEKTLLSDVAFYIQDVYQDNLSFMQVRIDLNT 1192

Query: 1012 IQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEI--FPPVDKSK---------- 1059
            I    L +  + +  +I + PK+K++   + +LD  K+ I  FP   K+K          
Sbjct: 1193 IDKLQLELTIEDIAVAITRAPKLKIQASDVTILDKDKIAINVFPEGYKAKSISTSAKEPH 1252

Query: 1060 ---IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQ 1116
               + F +  L+  LP ++VKG+  + R VI  ++  KR+           LLVEG GL+
Sbjct: 1253 ENDVFFRMQQLRRSLPGIVVKGLPDISRAVINVRDDTKRE-----------LLVEGYGLR 1301

Query: 1117 AVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADL 1176
             VM  +G+ G KT +NHI EV   LGIEAAR  II EI+ TM  HGMS+D RH+ LL D+
Sbjct: 1302 DVMSTDGVVGHKTATNHILEVFSVLGIEAARASIIGEIDYTMSNHGMSVDPRHIQLLGDV 1361

Query: 1177 MTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPM 1236
            MT++GE+LGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSECII+G  M
Sbjct: 1362 MTYKGEILGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKRDAVEGVSECIILGQTM 1421

Query: 1237 PLGTGILKI 1245
             +GTG  K+
Sbjct: 1422 SIGTGAFKV 1430


>gi|410079408|ref|XP_003957285.1| hypothetical protein KAFR_0D05030 [Kazachstania africana CBS 2517]
 gi|372463870|emb|CCF58150.1| hypothetical protein KAFR_0D05030 [Kazachstania africana CBS 2517]
          Length = 1462

 Score = 1160 bits (3000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/1343 (46%), Positives = 851/1343 (63%), Gaps = 109/1343 (8%)

Query: 5    KMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-----VAVLGIIHDRSKVT 59
            +++ L+K  ++K ++ +C     K  +C  CG +NG+VKKA      A L IIHD  +  
Sbjct: 132  RIDNLKKMGILKKVMDQCK----KQRRCLHCGALNGVVKKAAAGSGTASLKIIHDTFRWV 187

Query: 60   ---------ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL-- 108
                       + ++   ++H  E +  V   T  LNP+  L LFK++   DCE+L +  
Sbjct: 188  GKKSTPEKDNWIGDWNEVLSHHPELERFVKRCTDDLNPLKTLNLFKQVRPEDCELLGIDS 247

Query: 109  ---SERPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQELVEA 164
               S RPE  I   +  PP+ IRPSV+M D   SNE+D+T +L  I+ T++ ++  L + 
Sbjct: 248  TVKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTIKLTEIVWTSSLIKAGLEKG 307

Query: 165  NSAFKSLAGWETLQVEVAQYINSD------VRGVPFSMQVARPLSGFVQRLKGKQGRFRG 218
             S    +  W+ LQ+ VA YIN+D      + G        +P+ GF QRLKGKQGRFRG
Sbjct: 308  ISINNMMEHWDYLQLTVAMYINADSVNPAMLPGASSGGGKVKPIRGFCQRLKGKQGRFRG 367

Query: 219  NLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDK 278
            NLSGKRV+++GRTVISPDPNL I EVA+P R+A++LTYPE+V+ +N +KL++ + NGP+ 
Sbjct: 368  NLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRKKLQELVMNGPNI 427

Query: 279  YPGARMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSI 336
            +PGA  +   +  AR  + YG  R +LA  L+ G IV+RHLEDGDVVLFNRQPSLHR+SI
Sbjct: 428  HPGANYLLKKNEEARRNLRYGD-RLKLAKNLQYGDIVERHLEDGDVVLFNRQPSLHRLSI 486

Query: 337  MCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPK 396
            + H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPK
Sbjct: 487  LSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPK 546

Query: 397  NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWT 456
            +GE ++A+TQDF+T S+LI+ KD+F+DRA F+ +   M DG  + D+P PAI+KP  LWT
Sbjct: 547  SGEPIIAATQDFITGSYLISHKDSFFDRATFTQLLSMMSDGNLQFDIPPPAIMKPYYLWT 606

Query: 457  GKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSEL 516
            GKQLFS+LI+P+    V +NL  K K Y     ++  +E      M  NDGFV  R S +
Sbjct: 607  GKQLFSLLIKPNHKSPVVINLDAKNKVYIPPKSKSLPNE------MSRNDGFVIIRGSNI 660

Query: 517  ISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQP 576
            +SG + K+ LG+G K  ++  +LRDYG    +  MNR++KL AR++GN GFSIGI DV P
Sbjct: 661  LSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMSKLCARFLGNRGFSIGISDVTP 720

Query: 577  KKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGK 636
              +L  KK +L+   Y  C+  I  YN+GKL+ +PGC+  +TLEA I  +L+++RE+ G 
Sbjct: 721  ADDLKIKKEELVEIAYAKCDDLIDSYNKGKLETQPGCNEEETLEAKIGGLLSKVREEVGD 780

Query: 637  ACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKA 696
             C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHFP+ +
Sbjct: 781  VCINELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNS 840

Query: 697  KEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
            K P +KGFV NSF+SGL+  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS Q
Sbjct: 841  KTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQ 900

Query: 757  YDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQ 816
            YDN+VR +   IVQF YG DG+DP  MEG S +P+NF+R             +R L P Q
Sbjct: 901  YDNTVRTSSNGIVQFTYGGDGLDPMEMEG-SAQPVNFNRSWDHALNITFNNNERGLLPYQ 959

Query: 817  V----SEI---VEKQLAAY---GKESCSE---------------AFLNSLRKFFEGQQDK 851
            V    +E+   +E++L  Y   G E   E                F  +LR + + + D 
Sbjct: 960  VMKKTNEVLNPLEERLVRYDNLGNEVMKEDLDKLEYADQFDAERDFYKTLRSYIQSKSDH 1019

Query: 852  LDKK------IKFVEDIGWDDKSQILEEVTHKTS--------GITEKQLEVFIQTCFSRY 897
            L         ++ + + G + +S   +E     S         ITEK +  F++   S+Y
Sbjct: 1020 LAHVRKSRGLLELLSEPGEELQSLHPDERATDVSRSSVDQLCKITEKAVLKFLEIALSKY 1079

Query: 898  RVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRIST 957
            R  RVE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K IST
Sbjct: 1080 RKARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKTIST 1139

Query: 958  PIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHL 1017
            PII A L  N++E AARVVKGR+EKT+L  VA  I+ V    L+ + I +D+ TI+   L
Sbjct: 1140 PIINAVLVNNNDERAARVVKGRVEKTMLSDVAYYIQDVYKDNLSFLQIRIDLNTIEKLQL 1199

Query: 1018 CINADIVKESIVQTPKIKLKQQHIKVLDFRK--LEIFPPVDKSK-------------IHF 1062
             +  + +  ++ + PK+K++   + +    K  + +FP   KSK             + +
Sbjct: 1200 ELTIEDIAVALTKAPKLKIQASDVSIAGDDKVIVNVFPEGSKSKSISTSAKDPSENDVFY 1259

Query: 1063 ELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAE 1122
             +  L+  LP ++VKG+  + R VI  ++  KR+           LLVEG GL+ VM  +
Sbjct: 1260 RMQQLRRALPHIVVKGLPEIARAVINIRDDGKRE-----------LLVEGYGLREVMCTD 1308

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
            G+ G KT +NH+ EV   LGIEAAR  II EI+ TM  HGMS+D RH+ LL D+MT++GE
Sbjct: 1309 GVIGSKTVTNHVLEVSSVLGIEAARSSIIGEIDYTMSNHGMSVDPRHIQLLGDVMTYKGE 1368

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            VLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSECII+G  M +GTG 
Sbjct: 1369 VLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDNVEGVSECIILGQTMSIGTGS 1428

Query: 1243 LK-IRQRDAVPPMLKYGAPDPIM 1264
             K ++  D  P  LK   P P +
Sbjct: 1429 FKVVKGTDIKPEDLK---PKPTL 1448


>gi|444314063|ref|XP_004177689.1| hypothetical protein TBLA_0A03720 [Tetrapisispora blattae CBS 6284]
 gi|387510728|emb|CCH58170.1| hypothetical protein TBLA_0A03720 [Tetrapisispora blattae CBS 6284]
          Length = 1458

 Score = 1159 bits (2999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/1326 (47%), Positives = 849/1326 (64%), Gaps = 105/1326 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA-----VLGIIHDR 55
            +R P ++ L++  ++K I+ +C     K  +C  CG +NG+VKKA A      L IIHD 
Sbjct: 127  LRRPGIDNLKRMGILKKILDQCK----KQRRCLHCGGLNGVVKKAAAGGGSASLKIIHDT 182

Query: 56   SKVTESLQ---------EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +     Q         ++   ++H  E +  V  A   LNP+  L LFK++   DCE+L
Sbjct: 183  FRWVGKKQTPEKDSWVGDWQEVLSHNPELERFVKRAMDDLNPLKTLNLFKQIKPEDCELL 242

Query: 107  YL-----SERPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
             +     S RPE  I   +  PP+ IRPSV+M D   SNE+D+T +L  ++ T++ ++  
Sbjct: 243  GIDSTSKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEVVWTSSLIKAG 302

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA------RPLSGFVQRLKGKQG 214
            L +  S    +  W+ LQ+ VA YINSD    P  M  A      +P+ GF QRLKGKQG
Sbjct: 303  LEKGISINNMMEHWDYLQLSVAMYINSDSVN-PLLMPGASTGNKVKPIRGFCQRLKGKQG 361

Query: 215  RFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQN 274
            RFRGNLSGKRV+++GRTVISPDPNL I EVA+P R+A++LT+PERV+ +N  KL+  + N
Sbjct: 362  RFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPERVTRYNKRKLQALVLN 421

Query: 275  GPDKYPGARMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
            GP+ +PGA  +   D  AR  + YG  + +LA  L+ G +V+RHLEDGDVVLFNRQPSLH
Sbjct: 422  GPNVHPGANYLLKKDEEARRNLRYGD-KVKLAKNLQIGDVVERHLEDGDVVLFNRQPSLH 480

Query: 333  RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
            R+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL
Sbjct: 481  RLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 540

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
             TPK+GE ++A+TQDF+T S+LI+ KD+F+DRA F+ +   M DG  + D+P PAI+KP 
Sbjct: 541  LTPKSGEPIIAATQDFITGSYLISHKDSFFDRATFTQLLSMMCDGNLQFDIPPPAIMKPC 600

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFR 512
             LWTGKQLFS+LI+P++N  V +N+  K     NK+ +   D+ +  E M PNDGFV  R
Sbjct: 601  YLWTGKQLFSLLIKPNSNSPVVINVDAK-----NKVFKPPKDKSLPSE-MSPNDGFVVIR 654

Query: 513  NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
             S+++SG + K+ LG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI+
Sbjct: 655  GSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAATAMNRMAKLCARFLGNRGFSIGIN 714

Query: 573  DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
            DV P  +L + K  L+   Y  C+  I  YN+GKL+ +PGC+  QTLEA I+ IL+++RE
Sbjct: 715  DVTPDDKLKNLKENLVEIAYAKCDELIGLYNQGKLETQPGCNEEQTLEAKISGILSKVRE 774

Query: 633  DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
            + G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF
Sbjct: 775  EVGDICINELDNWNAPLIMATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 834

Query: 693  PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
             + +K P +KGFV NSFYSGLS  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LED
Sbjct: 835  QKNSKTPQSKGFVRNSFYSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 894

Query: 753  LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYL 812
            LS QYDN+VR +   IVQF YG DG+DP +MEG + +P+NF+R              + +
Sbjct: 895  LSCQYDNTVRTSSNGIVQFTYGGDGLDPFDMEG-NAQPVNFNRSWDHAYNIKFDNNDKTI 953

Query: 813  SPQQVSEI-------VEKQLAAY---GK-----ESCSEAFLNSL---RKFFEGQQDKLDK 854
             P Q+ EI       +E++L  Y   GK      S  + F++ L   R F+   +D + K
Sbjct: 954  YPYQILEITNDILHPLEEKLIRYDNIGKVVTPENSGKDEFVDQLDAERNFYNSLRDYMTK 1013

Query: 855  KIKFVEDI-------------GWDDKSQILEEVT--------HKTSGITEKQLEVFIQTC 893
            K   + D+             G + K   L+E T         +   ITE  +  F++  
Sbjct: 1014 KANELADVRKSRGMKELLSAPGDEFKLMDLDEQTPDSIRHSVEQICRITENTVREFLKIA 1073

Query: 894  FSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
             ++YR  RVE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K
Sbjct: 1074 ITKYRRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASK 1133

Query: 954  RISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
             ISTPII A L   ++E AARVVKGRIEKTLL  VA  I+       + + + +D+ TI+
Sbjct: 1134 VISTPIINAVLVNENDERAARVVKGRIEKTLLSDVAYYIQDCYKDNNSYLEVKIDLGTIE 1193

Query: 1014 DAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIF--PPVDKSKIH---------- 1061
               L +    + ++I + PK+K++   +      K+ I   P    SKI           
Sbjct: 1194 KLQLELTMSDIADAIARAPKLKIQFGDVVPESNSKIRISVRPEASVSKISASAKEPLENN 1253

Query: 1062 --FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVM 1119
              + +  L+  LP ++VKG+  + R VI         +++NG+++   LLVEG GL+ VM
Sbjct: 1254 VFYRMQHLRRALPSIVVKGLPDIARAVI--------NIRDNGKRE---LLVEGYGLRDVM 1302

Query: 1120 GAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTF 1179
              +G+ G KT +NH+ EV   LGIEAAR  II EI+ TM  HGMS+D RH+ LL D+MT+
Sbjct: 1303 CTDGVIGSKTTTNHVLEVNSVLGIEAARASIIGEIDYTMSNHGMSVDPRHIQLLGDVMTY 1362

Query: 1180 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLG 1239
            +GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSECII+G  M +G
Sbjct: 1363 KGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIG 1422

Query: 1240 TGILKI 1245
            TG  K+
Sbjct: 1423 TGSFKV 1428


>gi|448115320|ref|XP_004202788.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
 gi|359383656|emb|CCE79572.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
          Length = 1454

 Score = 1159 bits (2997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/1325 (46%), Positives = 838/1325 (63%), Gaps = 105/1325 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHD- 54
            +R P ++ L++  ++K I+++C     K  +C +C +ING+VKKA      A L I+HD 
Sbjct: 127  LRRPNLDNLKRMKILKRILEQCK----KQRRCVKCNHINGVVKKAASGSGPAALKIVHDT 182

Query: 55   ------RSKVTESL--QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
                  +    ++L  +EF        E +         LNP+ VL LFK++   DCE+L
Sbjct: 183  FRWIGKKPTPEKALWNEEFDEVFARNPELEKFSKRVYDDLNPLKVLNLFKQIEPADCELL 242

Query: 107  YLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
             +      RPE  I   +  PP+ IRPSV+MD +QSNE+D+T +L  I+ T++ ++  + 
Sbjct: 243  GIDPARGGRPEMYIWRYLPAPPVCIRPSVMMD-TQSNEDDLTVKLTEIVWTSSLIRAGIE 301

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPF-----SMQVARPLSGFVQRLKGKQGRFR 217
            +  +    +  W+ LQ+ VA YINSD     F       + A+P+ GF QRLKGKQGRFR
Sbjct: 302  KGITINNLMEQWDYLQLSVAMYINSDAANSAFLPSSGGSKSAKPIRGFCQRLKGKQGRFR 361

Query: 218  GNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPD 277
            GNLSGKRV+++GRTV+SPDPNL+I EVA+P R+A++LTYPE  + +N +KL++ I NGP+
Sbjct: 362  GNLSGKRVDFSGRTVVSPDPNLRIDEVAVPDRVAKVLTYPEMCTRYNRKKLQRLILNGPN 421

Query: 278  KYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSI 336
             YPGA  +++  +   R L    R +LA  L  G +V+RH+EDGDVVLFNRQPSLHR+SI
Sbjct: 422  TYPGANYLMKQNEAAKRNLRFGDRVKLAKNLHIGDVVERHIEDGDVVLFNRQPSLHRLSI 481

Query: 337  MCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPK 396
            + H A++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPK
Sbjct: 482  LSHFAKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNLLTPK 541

Query: 397  NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWT 456
            +GE ++A+TQDF+T S+LI+ KD+FYDRAA   M   M D   + D+P PAI KPV LWT
Sbjct: 542  SGEPIIAATQDFITGSYLISHKDSFYDRAALVQMLSMMSDANVQYDIPPPAIFKPVMLWT 601

Query: 457  GKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSEL 516
            GKQLFS+LIRP+   +V +NL  K KT+   L     +       M  NDGFV  R S++
Sbjct: 602  GKQLFSLLIRPNKKSKVLINLDAKNKTFIPPLKGFPNE-------MSQNDGFVVIRGSQI 654

Query: 517  ISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQP 576
            +SG + K+ LG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI+DV P
Sbjct: 655  LSGVMDKSLLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARFMGNRGFSIGINDVIP 714

Query: 577  KKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGK 636
            + EL  KK  ++ + Y  C+  I  YN GKL+ +PGC+  QTLEA I  +L+++RE  G+
Sbjct: 715  RSELKQKKELMVEQAYLKCDELIDSYNRGKLETQPGCNEEQTLEAKIGGLLSKVREQVGE 774

Query: 637  ACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKA 696
             C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF + +
Sbjct: 775  ICIKELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNS 834

Query: 697  KEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
            K P +KGFV NSF+SGLS TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS Q
Sbjct: 835  KTPQSKGFVRNSFFSGLSPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQ 894

Query: 757  YDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQ 816
            YDN+VRN+   +VQF YG DG+DP +MEG +  P+NF+R              R L P +
Sbjct: 895  YDNTVRNSSNGVVQFTYGGDGLDPLDMEGDA-RPVNFNRQWDHAFNVTFDVKDRGLKPYE 953

Query: 817  VSEIV-------EKQLAAYG------------------KESCSEAFLNSLRKFFEGQQDK 851
            +   V       EK+L  Y                   ++     F NS+R+F   +   
Sbjct: 954  ILNAVNYVLNPLEKKLVRYSNSGKILSLEDSDKIEYADEKDAERIFYNSIREFITEKAVS 1013

Query: 852  LDKKIKFVEDIGWDDKS-----------QILEEVTHKTSGITEKQLEVFIQTCFSRYRVK 900
            L  +I+   ++    +S           +      ++   I+EK +  F+  C  +Y   
Sbjct: 1014 L-AQIRERRNLKPSLRSPNDDEMDVVDDEACLNAVNQLLKISEKAIRSFLDQCVYKYFRA 1072

Query: 901  RVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPII 960
            +VE GTA+GAIGA SIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K ISTPII
Sbjct: 1073 KVEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPII 1132

Query: 961  TAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCIN 1020
             + L  +D+E AARVVKGRIEKTLL  VA  I+ V    +A I I +D++TI+   L + 
Sbjct: 1133 NSVLVNDDDERAARVVKGRIEKTLLEDVAFYIEDVYKENMAYISIKVDLDTIEKLQLELT 1192

Query: 1021 ADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK--------------------I 1060
             + +  +I   PK+K+    + +    K+ +   + ++K                    +
Sbjct: 1193 IEQIARAIANAPKLKISAADVAISGKDKINVLVTLKENKADNLMRNIAADYGSTDMNNSL 1252

Query: 1061 HFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMG 1120
             F    LK  LP + V G+  + R VI         ++++G+K+   LLVEG GL+ VM 
Sbjct: 1253 FFRAQVLKRALPQICVNGLSDISRAVI--------NIRDDGKKE---LLVEGYGLKNVMS 1301

Query: 1121 AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFR 1180
             +G+ G KT +NH+ E+ Q LGIEAAR  II EI+ TM  HGMS+D RH+ LL D+MT++
Sbjct: 1302 TDGVVGTKTTTNHVLEIFQVLGIEAARASIIKEIDYTMTNHGMSVDPRHIQLLGDVMTYK 1361

Query: 1181 GEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
            GEVLGITRFG+ KM  SVL LASFEKT DHLF+AS   ++D+IEGVSECII+G  M +GT
Sbjct: 1362 GEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKEDKIEGVSECIILGQTMNIGT 1421

Query: 1241 GILKI 1245
            G  K+
Sbjct: 1422 GAFKL 1426


>gi|414586610|tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
          Length = 1030

 Score = 1158 bits (2996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/901 (64%), Positives = 693/901 (76%), Gaps = 25/901 (2%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            MRNP+ +AL+K+  MK +  KC     K   CPRC Y NG+VKK  A L ++HD SKV +
Sbjct: 136  MRNPRADALQKSATMKKVRDKC-----KLSCCPRCDYRNGVVKKGRAGLIVVHDCSKVLD 190

Query: 61   S-LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITN 119
               +E  +A+ + KE  +A +V   +L+P  VL LF+RM D DCE+L L +RPEKLI+T 
Sbjct: 191  GHTEELKNALQNKKEKVSASSV--LVLDPATVLSLFRRMIDEDCELLNLGDRPEKLIVTE 248

Query: 120  IAVPPIAIRPSVIMDGSQ-SNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQ 178
            IAVPP+ IRPSV++  S+ SNE+ IT  LK I+ TN+ L++ L       K    W+ LQ
Sbjct: 249  IAVPPVPIRPSVVVGNSRTSNEDSITVILKSIVNTNSILKETLHTGGPFTKCFDCWQYLQ 308

Query: 179  VEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPN 238
            ++V +Y+NSD   +P S        G VQRLKGK GRFRGNLSGKR EYTGRTVISPDPN
Sbjct: 309  LQVVEYVNSDAPSLPESQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTGRTVISPDPN 363

Query: 239  LKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGK 298
            LKITEVAIP+ MAR+LTYPERVS++NIEKLRQCI+NGP KYPGA  +  PDG  + L   
Sbjct: 364  LKITEVAIPVLMARVLTYPERVSNYNIEKLRQCIRNGPFKYPGANFVTQPDGMKQSLKYG 423

Query: 299  FRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNP 358
             R   A +LK GCIV+RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNP
Sbjct: 424  DRRITARDLKCGCIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNP 483

Query: 359  YNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK 418
            YNADFDGDEMN+HVPQTEEARTEAL+LMGVQNNLCTPKNGEILVASTQDFLTSSFL+TRK
Sbjct: 484  YNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLVTRK 543

Query: 419  DTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLT 478
            DTFYDR++F+L+C Y+GDGM+ +DLPTPA++KPVELWTGKQLFSVL+RP+A+ +V++NL 
Sbjct: 544  DTFYDRSSFTLLCSYLGDGMENIDLPTPALIKPVELWTGKQLFSVLVRPNAHTKVFLNLA 603

Query: 479  VKEKTYSNKLIRTEGDEEIRI-----ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDG 533
            V+EK YS K  + EG EE++      ETMCPNDG+VYFRNSEL+SGQ+GKATLGNGNKDG
Sbjct: 604  VQEKIYSKKKGKKEGGEEVKETMCGRETMCPNDGYVYFRNSELLSGQVGKATLGNGNKDG 663

Query: 534  LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYE 593
            LYSVLLRDY +HA + CMNRLAK SAR+IGNHGFSIG+DDVQP + L+ +K K I   Y+
Sbjct: 664  LYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKKKEIDGGYK 723

Query: 594  VCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQ 653
             C+  I  + +G L L PGC+AAQTLE  IT +LN IR  AG  CM +L WRNSPLIMSQ
Sbjct: 724  KCHDLISLFAKGALALHPGCNAAQTLEHNITGVLNEIRSIAGNVCMDTLHWRNSPLIMSQ 783

Query: 654  CGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGL 713
            CGSKGSPINISQMVACVGQQSVGGRRAP+GF++R+LPHFP  +K PAAKGFVANSFY+GL
Sbjct: 784  CGSKGSPINISQMVACVGQQSVGGRRAPDGFLNRTLPHFPINSKTPAAKGFVANSFYTGL 843

Query: 714  SATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLY 773
            +ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD +VRNA G IVQFLY
Sbjct: 844  TATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLY 903

Query: 774  GDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKES- 832
            GDDGMDPA MEGK G PLN D+L MKV ATCP  G   LSP  + +++E +   +   S 
Sbjct: 904  GDDGMDPAKMEGKDGMPLNLDQLFMKVMATCPQRGSDTLSPVGIKQMLEDKFLQHDTSSD 963

Query: 833  --CSEAFLNSLRKFFEGQQD--KLDKKIKFVEDIGWDDKSQILEE-VTHKTSGITEKQLE 887
              CS  F  +L +F + + +  K  ++   + +   + K   LEE +    SGI+ KQL+
Sbjct: 964  GGCSAEFKKNLTEFLDKRIELMKCTRRALHLHEDHVEKKDSCLEESIAAIISGISAKQLQ 1023

Query: 888  V 888
            V
Sbjct: 1024 V 1024


>gi|448112703|ref|XP_004202165.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
 gi|359465154|emb|CCE88859.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
          Length = 1454

 Score = 1158 bits (2996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1339 (46%), Positives = 835/1339 (62%), Gaps = 133/1339 (9%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHD- 54
            +R P ++ L++  ++K I+++C     K  +C +C +ING+VKKA      A L I+HD 
Sbjct: 127  LRRPNLDNLKRMKILKRILEQCK----KQRRCVKCNHINGVVKKAASGSGPAALKIVHDT 182

Query: 55   ------RSKVTESL--QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
                  +    ++L  +EF        E +         LNP+ VL LFK++   DCE+L
Sbjct: 183  FRWIGKKPTPEKALWNEEFDEVFARNPELEKFSKRVYDDLNPLKVLNLFKQIEPADCELL 242

Query: 107  YLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
             +      RPE  I   +  PP+ IRPSV+MD +QSNE+D+T +L  I+ T++ ++  + 
Sbjct: 243  GIDPARGGRPEMYIWRYLPAPPVCIRPSVMMD-TQSNEDDLTVKLTEIVWTSSLIRAGIE 301

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPF-----SMQVARPLSGFVQRLKGKQGRFR 217
            +  +    +  W+ LQ+ VA YINSD     F       + A+P+ GF QRLKGKQGRFR
Sbjct: 302  KGITINNLMEQWDYLQLSVAMYINSDAANSAFLPSSGGSKSAKPIRGFCQRLKGKQGRFR 361

Query: 218  GNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPD 277
            GNLSGKRV+++GRTV+SPDPNL+I EVA+P R+A++LTYPE  + +N +KL++ I NGP+
Sbjct: 362  GNLSGKRVDFSGRTVVSPDPNLRIDEVAVPDRVAKVLTYPEMCTRYNRKKLQRLILNGPN 421

Query: 278  KYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSI 336
             YPGA  +++  +   R L    R +LA  L  G +V+RH+EDGDVVLFNRQPSLHR+SI
Sbjct: 422  TYPGANYLMKQNEAAKRNLRFGDRVKLAKNLHIGDVVERHIEDGDVVLFNRQPSLHRLSI 481

Query: 337  MCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPK 396
            + H A++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPK
Sbjct: 482  LSHFAKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNLLTPK 541

Query: 397  NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWT 456
            +GE ++A+TQDF+T S+LI+ KD+FYDRAA   M   M D   + D+P PAI KPV LWT
Sbjct: 542  SGEPIIAATQDFITGSYLISHKDSFYDRAALVQMLSMMSDANVQYDIPPPAIFKPVMLWT 601

Query: 457  GKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSEL 516
            GKQ+FS+LIRP+ N +V +NL  K KT+   L     +       M  NDGFV  R S++
Sbjct: 602  GKQIFSLLIRPNKNSKVLINLDAKNKTFIPPLKGFPNE-------MSQNDGFVVIRGSQI 654

Query: 517  ISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQP 576
            +SG + K+ LG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI+DV P
Sbjct: 655  LSGVMDKSLLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARFMGNRGFSIGINDVIP 714

Query: 577  KKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGK 636
              EL  KK  ++ + Y  C+  I  YN GKL+ +PGC+  QTLEA I  +L+++RE  G+
Sbjct: 715  GSELKQKKELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREQVGE 774

Query: 637  ACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKA 696
             C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF + +
Sbjct: 775  ICIKELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNS 834

Query: 697  KEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
            K P +KGFV NSF+SGLS TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS Q
Sbjct: 835  KTPQSKGFVRNSFFSGLSPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQ 894

Query: 757  YDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQ 816
            YDN+VRN+   IVQF YG DG+DP +MEG + +P+NF+R              R L P +
Sbjct: 895  YDNTVRNSSNGIVQFTYGGDGLDPLDMEGDA-KPVNFNRQWDHAFNVTFDVKDRGLKPYE 953

Query: 817  VSEIV-------EKQLAAYG------------------KESCSEAFLNSLRKFFEGQQDK 851
            +   V       EK+L  Y                   ++     F NS+R+F   +  +
Sbjct: 954  ILNAVEYVLNPLEKKLVRYSNSGKILSLEDSDKIEYADEKDAERNFYNSIREFITEKAVQ 1013

Query: 852  LDKKIKFVEDIGWDDKSQILEEVTHKTS-------------------------GITEKQL 886
            L               +QI E    K S                          I+EK +
Sbjct: 1014 L---------------AQIRERRNLKPSLRPPKDDEMDVVDDEACLNAVNQLLKISEKAI 1058

Query: 887  EVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIK 946
              F+  C  +Y   +VE GTA+GAIGA SIGEPGTQMTLKTFHFAGVASMN+T GVPRIK
Sbjct: 1059 RSFLDQCIYKYFRAKVEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1118

Query: 947  EIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIA 1006
            EIIN +K ISTPII + L  +D+E AARVVKGRIEKTLL  VA  I+ V    +A I I 
Sbjct: 1119 EIINASKVISTPIINSVLVNDDDERAARVVKGRIEKTLLEDVAFYIEDVYKENMAYISIK 1178

Query: 1007 LDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK------- 1059
            +D+ETI+   L +  + +  +I   PK+K+    + +    K+ +   +  SK       
Sbjct: 1179 VDLETIEKLQLELTIEQIARAIANAPKLKISAADVAISGKDKINVLVTLKDSKADNLMRN 1238

Query: 1060 -------------IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKY 1106
                         + F    LK  LP + V G+  + R VI         ++++G+K+  
Sbjct: 1239 IAADYGSTDMNNSLFFRAQVLKRALPHICVNGLSDISRAVI--------NIRDDGKKE-- 1288

Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             LLVEG GL+ VM  +G+ G KT +NH+ E+ + LGIEAAR  II EI+ TM  HGMS+D
Sbjct: 1289 -LLVEGYGLKNVMSTDGVVGTKTTTNHVLEIFEVLGIEAARASIIKEIDYTMTNHGMSVD 1347

Query: 1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
             RH+ LL D+MT++GEVLGITRFG+ KM  SVL LASFEKT DHLF+AS   ++D+IEGV
Sbjct: 1348 PRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKEDKIEGV 1407

Query: 1227 SECIIMGIPMPLGTGILKI 1245
            SECII+G  M +GTG  K+
Sbjct: 1408 SECIILGQTMNIGTGAFKL 1426


>gi|260946503|ref|XP_002617549.1| DNA-directed RNA polymerase III largest subunit [Clavispora
            lusitaniae ATCC 42720]
 gi|238849403|gb|EEQ38867.1| DNA-directed RNA polymerase III largest subunit [Clavispora
            lusitaniae ATCC 42720]
          Length = 1491

 Score = 1157 bits (2993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/1330 (46%), Positives = 845/1330 (63%), Gaps = 111/1330 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHD- 54
            +R P ++ LR+  ++K +V++C     K  +C +C ++NG+VKKA      A L I+HD 
Sbjct: 160  LRRPNIDNLRRMKVLKKVVEQCK----KQRRCLKCHHVNGVVKKAASGAGPAALKILHDT 215

Query: 55   ------RSKVTESL--QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
                  +S   + L  +EF        E +         LNP+ VL LF+++T  DCE+ 
Sbjct: 216  FRYVGKKSAPEKDLWDREFDEVFHRNPELEKFAKRVHEDLNPLKVLNLFRQITPQDCELF 275

Query: 107  YLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
             +      RPE  I   +  PP+ IRPSV+MD +QSNE+D+T +L  I+ T++ ++  + 
Sbjct: 276  GIDAARGGRPEMYIWRYLPAPPVCIRPSVMMD-NQSNEDDLTVKLTEIVWTSSLIKAGIE 334

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPF--------SMQVARPLSGFVQRLKGKQG 214
            +  S    +  W+ LQ+ VA YINSD                + ++P+ GF QRLKGKQG
Sbjct: 335  KGISINNMMEQWDYLQLSVAMYINSDSANPALLPGGMGGSGSKSSKPIRGFCQRLKGKQG 394

Query: 215  RFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQN 274
            RFRGNLSGKRV+++GRTVISPDPNL+I EVA+P R+A+ILTYPE+ + +N +KL++ I N
Sbjct: 395  RFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPDRVAKILTYPEKCTRYNRQKLQKLILN 454

Query: 275  GPDKYPGARMIRYPDGTA-RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHR 333
            GP  +PGA  +   +  A R L    R +LA  L+ G IV+RH+EDGDVVLFNRQPSLHR
Sbjct: 455  GPTVHPGANYVLKQNEVAKRNLKFGDRVKLAKTLRIGDIVERHIEDGDVVLFNRQPSLHR 514

Query: 334  MSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLC 393
            +SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL 
Sbjct: 515  LSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLL 574

Query: 394  TPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVE 453
            TPK+GE ++A+TQDF+T S+LI+ KD+F+DRA+   + C M D   + D+P P + KPV 
Sbjct: 575  TPKSGEPIIAATQDFITGSYLISHKDSFFDRASLVQLLCMMSDADMQFDIPPPTVFKPVM 634

Query: 454  LWTGKQLFSVLIRPHANMRVYVNLTVKEKTY--SNKLIRTEGDEEIRIETMCPNDGFVYF 511
            LWTGKQ+FS+LIRP+    V +N+  K KT+    K +  E         M PNDGFV  
Sbjct: 635  LWTGKQVFSMLIRPNKKSNVVINVDAKNKTFIPPPKHLPNE---------MSPNDGFVVI 685

Query: 512  RNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGI 571
            R S+++SG + K+TLG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI
Sbjct: 686  RGSQILSGVMDKSTLGDGKKHSVFYTILRDYGPDEAAKAMNRMAKLCARYLGNRGFSIGI 745

Query: 572  DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIR 631
            +DV P  +L  KK +++   Y  C+  I  Y +GKL+ +PGC+  QTLEA I  +L+++R
Sbjct: 746  NDVTPGADLKAKKERMVEAAYAKCDELIDLYTKGKLETQPGCNEEQTLEAKIGGLLSKVR 805

Query: 632  EDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPH 691
            E+ G+ C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPH
Sbjct: 806  EEVGEVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPH 865

Query: 692  FPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALE 751
            F + +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LE
Sbjct: 866  FTKMSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLE 925

Query: 752  DLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRY 811
            DLS  YDN+VRN+   IVQF YG DG+DP +MEG + +P+NF+R             +  
Sbjct: 926  DLSSSYDNTVRNSSNGIVQFTYGGDGLDPLDMEGDA-QPVNFNRQWDHAYNITYNQKEAN 984

Query: 812  LSPQQVSEIV-------EKQLAAY------------------GKESCSEAFLNSLRKFFE 846
            L P Q+ ++V       E +L  Y                   ++    AF  S+R + +
Sbjct: 985  LLPFQIMDVVNSILAPLENKLVRYDNLGNLIEGEIGDRIEYIDQKDAERAFYQSIRTYVQ 1044

Query: 847  GQQDKL-----DKKIKFVEDIGWDDKSQILEE------VTHKTSGITEKQLEVFIQTCFS 895
             +  +L      KK++       DD   +L+E        ++   I++  +E F++ C  
Sbjct: 1045 KKATQLARLRQQKKLRPFLTKLEDDGDMVLDEDPVSINAINQLMKISQTCVEEFLKQCLY 1104

Query: 896  RYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRI 955
            +Y   RVE GTA+GAIGA SIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN AK I
Sbjct: 1105 KYLRARVEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKVI 1164

Query: 956  STPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDA 1015
            STPII   L  +++E AARVVKGRIEKTLL  VA  ++ V  + +A + I +D++TI+  
Sbjct: 1165 STPIINTVLVNDEDEVAARVVKGRIEKTLLRDVAFFVEDVYKNDMAYLSIKIDLKTIEKL 1224

Query: 1016 HLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK---------------- 1059
             L +  D ++++I   PK+K+    + V    ++ +   + +SK                
Sbjct: 1225 QLELTMDNIRQAIANAPKLKILNSEVSVYGKDRINVLVTLRESKSESLARTAASDYKASD 1284

Query: 1060 ----IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGL 1115
                + F +  LK  LP V++KG+  + R VI  ++  K++           LLVEG GL
Sbjct: 1285 VNNSLFFRMQHLKRALPDVVIKGLPNISRAVINIRDDSKKE-----------LLVEGYGL 1333

Query: 1116 QAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLAD 1175
            + VM  +GI G KT +NH+ EV + LGIEAAR  II EI+ TM  HGMS+D RH+ LL D
Sbjct: 1334 KDVMSTDGIVGTKTSTNHVLEVYEVLGIEAARASIIGEIDYTMSKHGMSVDPRHIQLLGD 1393

Query: 1176 LMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIP 1235
            +MT++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   ++D+IEGVSECII+G  
Sbjct: 1394 VMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKIEGVSECIILGQT 1453

Query: 1236 MPLGTGILKI 1245
            M +GTG  K+
Sbjct: 1454 MSIGTGAFKL 1463


>gi|146415288|ref|XP_001483614.1| DNA-directed RNA polymerase III largest subunit [Meyerozyma
            guilliermondii ATCC 6260]
          Length = 1379

 Score = 1157 bits (2992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1329 (47%), Positives = 839/1329 (63%), Gaps = 102/1329 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHDR 55
            +R P ++ LR+   +K +V +C     K  +C RC +ING+VKKA      A L I+HD 
Sbjct: 57   LRRPGIDNLRRMKTLKKVVDQCK----KQRRCLRCYHINGVVKKAASGSGPAALKIVHDT 112

Query: 56   SKVTESL---------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +              QEF        E +         LNP+ VL LFK++T  DCE+ 
Sbjct: 113  FRWVGKKSAPEKDAWDQEFDEVFARNPEVEKFAKRVHDDLNPLKVLNLFKQITPQDCELF 172

Query: 107  YLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
             +      RPE  I   +  PP+ IRPSV+MD +Q NE+DIT +L  I+ T++ ++  + 
Sbjct: 173  GIDASRGGRPEMYIWRYLPAPPVCIRPSVMMD-AQLNEDDITVKLTEIVWTSSLIKAGIE 231

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPF--SM----QVARPLSGFVQRLKGKQGRF 216
            +  S    +  W+ LQ+ VA YINSD        SM    + A+P+ GF QRLKGKQGRF
Sbjct: 232  KGISINNLMEQWDYLQLSVAMYINSDAANPALLPSMSGGAKSAKPIRGFCQRLKGKQGRF 291

Query: 217  RGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGP 276
            RGNLSGKRV+++ RTVISPDPNL+I EVA+P R+A++LTYPE+ + +N +KL+Q I NGP
Sbjct: 292  RGNLSGKRVDFSARTVISPDPNLRIDEVAVPDRVAKVLTYPEKCTRYNRKKLQQLILNGP 351

Query: 277  DKYPGARMI-RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMS 335
            D +PGA  + +  +   R L    + +LA  L  G +V+RH+EDGDVVLFNRQPSLHR+S
Sbjct: 352  DVHPGANYVMKQNEAAKRNLRFGDKVKLAKNLHVGDVVERHIEDGDVVLFNRQPSLHRLS 411

Query: 336  IMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTP 395
            I+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TP
Sbjct: 412  ILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTP 471

Query: 396  KNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELW 455
            K+GE ++A+TQDF+T S+LI+ KD+FYDRA F  +   M D   + DLP P I KPV LW
Sbjct: 472  KSGEPIIAATQDFITGSYLISHKDSFYDRATFIQLLSMMSDADLQFDLPPPTIFKPVMLW 531

Query: 456  TGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSE 515
            TGKQ+FS+L++P+ N  V VNL  K K ++        +       M PNDG+V  R S+
Sbjct: 532  TGKQVFSLLMKPNKNSNVIVNLDAKNKAFTPPAPGYPNE-------MSPNDGYVIIRGSQ 584

Query: 516  LISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQ 575
            ++SG + K TLG+G K  ++  +LRD+G  A +  MNR+AKL AR++GN GFSIGI+DV 
Sbjct: 585  VLSGVMDKLTLGDGKKHSVFYTILRDFGPDAAAEAMNRMAKLCARYLGNRGFSIGINDVT 644

Query: 576  PKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAG 635
            P  +L  KK  ++ + Y  C+  I  YN GKL+ +PGC+  QTLEA I  +L+++RE  G
Sbjct: 645  PGTDLKRKKELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREQVG 704

Query: 636  KACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRK 695
            + C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF + 
Sbjct: 705  EVCINELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKN 764

Query: 696  AKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI 755
            +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS 
Sbjct: 765  SKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSA 824

Query: 756  QYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQ 815
            QYDN+VRN+   IVQF YG DG+DP +MEG +  P+NF R                L P 
Sbjct: 825  QYDNTVRNSSNGIVQFTYGGDGLDPFDMEGDA-RPVNFARQWSHAYNVTYDVNDLGLLPY 883

Query: 816  QVSEI-------VEKQLAAYGK--------ESCSEAFL---NSLRKFFEGQQDKLDKKIK 857
            ++ +        +E +L  Y          E+ SE F+   ++ R F++  ++ + +K  
Sbjct: 884  KILQATDDVLAPLEAKLIRYDNLGQPVTEGEADSEEFIDQNDAERAFYKSIREFVLEKAS 943

Query: 858  FVEDI--------GW------DDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVE 903
             + +I        GW      DD  Q+     ++ S I+ K +  F+  C  +Y   +VE
Sbjct: 944  QLAEIRQSKNLKSGWSRPASKDDPVQL--NAVNQLSKISLKAINKFLDQCIYKYSRAKVE 1001

Query: 904  AGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAE 963
             GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K ISTPII   
Sbjct: 1002 PGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINGV 1061

Query: 964  LECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADI 1023
            L  +D+E AARVVKGRIEKTLL  VA  I+ V    LA + + +D++TI+   L +  + 
Sbjct: 1062 LVNDDDEIAARVVKGRIEKTLLEDVAFFIEDVYKDNLAYLSVKIDLDTIEKLQLELTIES 1121

Query: 1024 VKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK-------------------IHFEL 1064
            +  +IV  PK+K+    + +    ++ +   + ++K                   + F +
Sbjct: 1122 IAHAIVTAPKLKIVASDVSIAGRDRINVLVTLRETKADLLKNMADDYRASDSTNSLFFRM 1181

Query: 1065 YSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGI 1124
              LK  LP V +KG+  + R VI         +K+NG+K+   LLVEG GL+ VM  +GI
Sbjct: 1182 QQLKRALPSVCIKGLPEISRAVI--------NIKDNGKKE---LLVEGYGLKQVMSTDGI 1230

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
             G KT +NH+ EV + LGIEAAR  II EI+ TM  HGMS+D RH+ LL D+M+++GEVL
Sbjct: 1231 IGTKTTTNHVLEVFEVLGIEAARASIIGEIDYTMSKHGMSVDPRHIQLLGDVMSYKGEVL 1290

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
            GITRFG+ KM  SVL LASFEKT DHLF+A+   + D+IEGVSECII+G  M +GTG  +
Sbjct: 1291 GITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDQIEGVSECIILGQTMSIGTGAFQ 1350

Query: 1245 IRQRDAVPP 1253
            + +     P
Sbjct: 1351 LVKSSPYEP 1359


>gi|47216067|emb|CAG04806.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1319

 Score = 1156 bits (2991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 615/1257 (48%), Positives = 825/1257 (65%), Gaps = 94/1257 (7%)

Query: 32   CPRCGYINGMVK-------KAVAVLGIIHDRSK---------VTESLQEFASAITHTKES 75
            C   GY   ++        K   +L IIH++ K         V+E LQ F  AI H K  
Sbjct: 92   CFHIGYFKAIIGILQARPVKKCGLLKIIHEKYKTTKKVVDPFVSEFLQSFDIAIEHNKVL 151

Query: 76   KAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVI 132
            +  ++ A   LNP+ VL LFKR++  D  +L ++     P  LI+T + VPP+ IRPSV+
Sbjct: 152  EPLLSRAQENLNPLVVLNLFKRISREDIPLLLMNPEAGIPADLILTRLLVPPLCIRPSVV 211

Query: 133  MD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRG 191
             D  S +NE+D+T +L  II  N  +++  +        +  W+ LQ++ A YINS++ G
Sbjct: 212  SDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCALYINSELSG 271

Query: 192  VPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMA 251
            +P +M   +   GFVQRLKGKQGRFRGNLSGKRV+++GRTVISPDPNL+I EVA+P+ +A
Sbjct: 272  IPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVA 331

Query: 252  RILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI--RYPDGTARVLYGKFRNQLAVELKS 309
            +ILTYPERV+  N+E +R+ ++NGP+ +PGA  I  RY      + YG  R ++A EL+ 
Sbjct: 332  KILTYPERVNKANLELMRKLVRNGPEVHPGANFIQNRYNQIKRFLKYGN-REKIAQELRY 390

Query: 310  GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMN 369
            G IV+RH+ DGD+VLFNRQPSLH++SIM H AR+ P RT RFNE VC PYNADFDGDEMN
Sbjct: 391  GDIVERHMIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMN 450

Query: 370  MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
            +H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ QDFLT ++L+T KDTF+DR+    
Sbjct: 451  LHLPQTEEAKAEALILMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRSKACQ 510

Query: 430  MCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSN 486
            +   +  G D   R+  P PAI+KP+ LWTGKQ+FSV+++P  +  V  NL  K K Y  
Sbjct: 511  IVASILVGKDEKVRISFPRPAIMKPMALWTGKQIFSVILKPSKDCPVNANLKTKGKQYCG 570

Query: 487  KLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHA 546
            K            E +C ND FV   NSEL+ G + K TLG+G+K+ ++ +LLRD+G   
Sbjct: 571  K-----------GEDLCHNDSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQLE 619

Query: 547  TSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGK 606
             +  M+RLA+L+  ++ N GFSIGI DV P + L   K  L+ + Y  C+  I+    GK
Sbjct: 620  AANAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKHDLLDDGYTKCDEYIEALQTGK 679

Query: 607  LQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQM 666
            LQ +PGC A +TLEA+I   L+ IR+ AG AC+  L   NSPL M+ CGSKGS INISQM
Sbjct: 680  LQQQPGCTAEETLEALILRELSVIRDRAGSACLRELDKSNSPLTMALCGSKGSFINISQM 739

Query: 667  VACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGR 726
            +ACVGQQ++ G R P+GF +RSLPHF + +K PAAKGFVANSFYSGL+ TEFFFHTM GR
Sbjct: 740  IACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGR 799

Query: 727  EGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
            EGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR++ G I+QF+YG DG+DPA MEGK
Sbjct: 800  EGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGK 859

Query: 787  SGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFE 846
              EPL F R+L  ++A    + +  LS  ++    +  +       C ++FL  L     
Sbjct: 860  D-EPLEFKRVLDNIRAVYACSDEPALSQNELVLTADAIMKRTDFLCCRDSFLEELTD--T 916

Query: 847  GQQDKLDKKIKFVEDI-----------GWDDKSQILEEVTHKTSGITEKQLEVFIQTCFS 895
            G +  L++  KFV+             G +D      +V ++   IT  QLE F++TC  
Sbjct: 917  GSEKYLEEIKKFVKSFSERIKKTRDKYGINDNGTSEPKVLYQLDRITPTQLEKFLETCRD 976

Query: 896  RYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRI 955
            +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GVPRIKEIIN +K I
Sbjct: 977  KYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNI 1036

Query: 956  STPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ-- 1013
            STPIITA L+  D+ + AR+VKGRIEKTLLG++++ I+ V       I++ L +E I+  
Sbjct: 1037 STPIITAHLDVEDDADFARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLL 1096

Query: 1014 --DAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVL 1071
              +A +C++    +E+                             KS +++ L SLK  L
Sbjct: 1097 RLEAVVCVSP---REN----------------------------SKSSMYYVLQSLKEEL 1125

Query: 1072 PMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKS 1131
            P V+V+GI  V R VI         + E   + KY+LLVEG  ++AVM   G+ G +T S
Sbjct: 1126 PKVVVQGIPEVSRAVI--------HIDEQSGRNKYKLLVEGDNMRAVMATHGVKGSRTTS 1177

Query: 1132 NHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGI 1191
            N+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLLADLM+++GE+LGITRFG+
Sbjct: 1178 NNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGL 1237

Query: 1192 QKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
             KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG+ K+  +
Sbjct: 1238 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1294


>gi|6324690|ref|NP_014759.1| Rpo31p [Saccharomyces cerevisiae S288c]
 gi|133356|sp|P04051.1|RPC1_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
            polymerase III subunit C1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit; AltName: Full=RNA
            polymerase III subunit C160
 gi|4400|emb|CAA26905.1| RNA polymerase III largest subunit [Saccharomyces cerevisiae]
 gi|1050828|emb|CAA62123.1| ORF O3254 [Saccharomyces cerevisiae]
 gi|1164961|emb|CAA64036.1| YOR3254c [Saccharomyces cerevisiae]
 gi|1420309|emb|CAA99314.1| RPO31 [Saccharomyces cerevisiae]
 gi|151945738|gb|EDN63979.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
 gi|285814998|tpg|DAA10891.1| TPA: Rpo31p [Saccharomyces cerevisiae S288c]
 gi|392296445|gb|EIW07547.1| Rpo31p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1460

 Score = 1154 bits (2986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/1340 (46%), Positives = 839/1340 (62%), Gaps = 111/1340 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAV-----LGIIHDR 55
            +R P ++ LR+  ++K I+ +C     K  +C  CG +NG+VKKA A      L IIHD 
Sbjct: 127  LRRPGVDNLRRMGILKKILDQCK----KQRRCLHCGALNGVVKKAAAGAGSAALKIIHDT 182

Query: 56   SKVTES---------LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +             + E+   + H  E +  V      LNP+  L LFK++   DCE+L
Sbjct: 183  FRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELL 242

Query: 107  YL-----SERPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
             +     S RPE  I   +  PP+ IRPSV+M D   SNE+D+T +L  I+ T++ ++  
Sbjct: 243  GIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAG 302

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSD------VRGVPFSMQVARPLSGFVQRLKGKQG 214
            L +  S    +  W+ LQ+ VA YINSD      + G        +P+ GF QRLKGKQG
Sbjct: 303  LDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQG 362

Query: 215  RFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQN 274
            RFRGNLSGKRV+++GRTVISPDPNL I EVA+P R+A++LTYPE+V+ +N  KL++ I N
Sbjct: 363  RFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVN 422

Query: 275  GPDKYPGARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
            GP+ +PGA  +  R  D    + YG  R +LA  L+ G +V+RHLEDGDVVLFNRQPSLH
Sbjct: 423  GPNVHPGANYLLKRNEDARRNLRYGD-RMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLH 481

Query: 333  RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
            R+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL
Sbjct: 482  RLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 541

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
             TPK+GE ++A+TQDF+T S+LI+ KD+FYDRA  + +   M DG++  D+P PAI+KP 
Sbjct: 542  LTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGIEHFDIPPPAIMKPY 601

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFR 512
             LWTGKQ+FS+LI+P+ N  V +NL  K K +     ++  +E      M  NDGFV  R
Sbjct: 602  YLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNE------MSQNDGFVIIR 655

Query: 513  NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
             S+++SG + K+ LG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI+
Sbjct: 656  GSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSIGIN 715

Query: 573  DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
            DV P  +L  KK +L+   Y  C+  I  +N+G+L+ +PGC+  QTLEA I  +L+++RE
Sbjct: 716  DVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVRE 775

Query: 633  DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
            + G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF
Sbjct: 776  EVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 835

Query: 693  PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
            P+ +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LED
Sbjct: 836  PKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 895

Query: 753  LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYL 812
            LS QYDN+VR +   IVQF YG DG+DP  MEG + +P+NF+R              + L
Sbjct: 896  LSCQYDNTVRTSANGIVQFTYGGDGLDPLEMEG-NAQPVNFNRSWDHAYNITFNNQDKGL 954

Query: 813  SPQQVSEI-------VEKQLAAYGKESC------------------SEAFLNSLRKFFEG 847
             P  + E        +E++L  Y    C                     F +SLR++  G
Sbjct: 955  LPYAIMETANEILGPLEERLVRYDNSGCLVKREDLNKAEYVDQYDAERDFYHSLREYING 1014

Query: 848  QQDKLDKKIK-----------FVEDIGWDDKSQILEEVTHKTSG---ITEKQLEVFIQTC 893
            +   L    K             E  G D    + + V    S    I+EK +  F++  
Sbjct: 1015 KATALANLRKSRGMLGLLEPPAKELQGIDPDETVPDNVKTSVSQLYRISEKSVRKFLEIA 1074

Query: 894  FSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
              +YR  R+E GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K
Sbjct: 1075 LFKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASK 1134

Query: 954  RISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
             ISTPII A L  +++E AARVVKGR+EKTLL  VA  ++ V    L+ I + +D+ TI 
Sbjct: 1135 VISTPIINAVLVNDNDERAARVVKGRVEKTLLSDVAFYVQDVYKDNLSFIQVRIDLGTID 1194

Query: 1014 DAHLCINADIVKESIVQTPKIKLKQQHIKVL--DFRKLEIFPPVDKSK------------ 1059
               L +  + +  +I +  K+K++   + ++  D   + +FP   K+K            
Sbjct: 1195 KLQLELTIEDIAVAITRASKLKIQASDVNIIGKDRIAINVFPEGYKAKSISTSAKEPSEN 1254

Query: 1060 -IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
             + + +  L+  LP V+VKG+  + R VI  ++  KR+           LLVEG GL+ V
Sbjct: 1255 DVFYRMQQLRRALPDVVVKGLPDISRAVINIRDDGKRE-----------LLVEGYGLRDV 1303

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            M  +G+ G +T +NH+ EV   LGIEAAR  II EIN TM  HGMS+D RH+ LL D+MT
Sbjct: 1304 MCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMT 1363

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
            ++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSECII+G  M +
Sbjct: 1364 YKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSI 1423

Query: 1239 GTGILK------IRQRDAVP 1252
            GTG  K      I ++D VP
Sbjct: 1424 GTGSFKVVKGTNISEKDLVP 1443


>gi|190407445|gb|EDV10712.1| DNA-directed RNA polymerase III largest subunit [Saccharomyces
            cerevisiae RM11-1a]
 gi|207341165|gb|EDZ69295.1| YOR116Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259149599|emb|CAY86403.1| Rpo31p [Saccharomyces cerevisiae EC1118]
 gi|323331486|gb|EGA72901.1| Rpo31p [Saccharomyces cerevisiae AWRI796]
 gi|323352093|gb|EGA84630.1| Rpo31p [Saccharomyces cerevisiae VL3]
          Length = 1460

 Score = 1154 bits (2986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/1340 (46%), Positives = 838/1340 (62%), Gaps = 111/1340 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAV-----LGIIHDR 55
            +R P ++ LR+  ++K I+ +C     K  +C  CG +NG+VKKA A      L IIHD 
Sbjct: 127  LRRPGVDNLRRMGILKKILDQCK----KQRRCLHCGALNGVVKKAAAGAGSAALKIIHDT 182

Query: 56   SKVTES---------LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +             + E+   + H  E +  V      LNP+  L LFK++   DCE+L
Sbjct: 183  FRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELL 242

Query: 107  YL-----SERPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
             +     S RPE  I   +  PP+ IRPSV+M D   SNE+D+T +L  I+ T++ ++  
Sbjct: 243  GIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAG 302

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSD------VRGVPFSMQVARPLSGFVQRLKGKQG 214
            L +  S    +  W+ LQ+ VA YINSD      + G        +P+ GF QRLKGKQG
Sbjct: 303  LDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQG 362

Query: 215  RFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQN 274
            RFRGNLSGKRV+++GRTVISPDPNL I EVA+P R+A++LTYPE+V+ +N  KL++ I N
Sbjct: 363  RFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVN 422

Query: 275  GPDKYPGARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
            GP+ +PGA  +  R  D    + YG  R +LA  L+ G +V+RHLEDGDVVLFNRQPSLH
Sbjct: 423  GPNVHPGANYLLKRNEDARRNLRYGD-RMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLH 481

Query: 333  RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
            R+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL
Sbjct: 482  RLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 541

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
             TPK+GE ++A+TQDF+T S+LI+ KD+FYDRA  + +   M DG++  D+P PAI+KP 
Sbjct: 542  LTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGIEHFDIPPPAIMKPY 601

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFR 512
             LWTGKQ+FS+LI+P+ N  V +NL  K K +     ++  +E      M  NDGFV  R
Sbjct: 602  YLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNE------MSQNDGFVIIR 655

Query: 513  NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
             S+++SG + K+ LG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI+
Sbjct: 656  GSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSIGIN 715

Query: 573  DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
            DV P  +L  KK +L+   Y  C+  I  +N+G+L+ +PGC+  QTLEA I  +L+++RE
Sbjct: 716  DVTPADDLKQKKEELVEIAYRKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVRE 775

Query: 633  DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
            + G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF
Sbjct: 776  EVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 835

Query: 693  PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
            P+ +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LED
Sbjct: 836  PKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 895

Query: 753  LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYL 812
            LS QYDN+VR +   IVQF YG DG+DP  MEG + +P+NF+R              + L
Sbjct: 896  LSCQYDNTVRTSANGIVQFTYGGDGLDPLEMEG-NAQPVNFNRSWDHAYNITFNNQDKGL 954

Query: 813  SPQQVSEI-------VEKQLAAYGKESC------------------SEAFLNSLRKFFEG 847
             P  + E        +E++L  Y    C                     F +SLR++  G
Sbjct: 955  LPYAIMETANEILGPLEERLVRYDNSGCLVKREDLNKAEYVDQYDAERDFYHSLREYING 1014

Query: 848  QQDKLDKKIK-----------FVEDIGWDDKSQILEEVTHKTSG---ITEKQLEVFIQTC 893
            +   L    K             E  G D    +   V    S    I+EK +  F++  
Sbjct: 1015 KATALANLRKSRGMLGLLEPPAKELQGIDPDETVPNNVKTSVSQLYRISEKSVRKFLEIA 1074

Query: 894  FSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
              +YR  R+E GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K
Sbjct: 1075 LFKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASK 1134

Query: 954  RISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
             ISTPII A L  +++E AARVVKGR+EKTLL  VA  ++ V    L+ I + +D+ TI 
Sbjct: 1135 VISTPIINAVLVNDNDERAARVVKGRVEKTLLSDVAFYVQDVYKDNLSFIQVRIDLGTID 1194

Query: 1014 DAHLCINADIVKESIVQTPKIKLKQQHIKVL--DFRKLEIFPPVDKSK------------ 1059
               L +  + +  +I +  K+K++   + ++  D   + +FP   K+K            
Sbjct: 1195 KLQLELTIEDIAVAITRASKLKIQASDVNIIGKDRIAINVFPEGYKAKSISTSAKEPSEN 1254

Query: 1060 -IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
             + + +  L+  LP V+VKG+  + R VI  ++  KR+           LLVEG GL+ V
Sbjct: 1255 DVFYRMQQLRRALPDVVVKGLPDISRAVINIRDDGKRE-----------LLVEGYGLRDV 1303

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            M  +G+ G +T +NH+ EV   LGIEAAR  II EIN TM  HGMS+D RH+ LL D+MT
Sbjct: 1304 MCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMT 1363

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
            ++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSECII+G  M +
Sbjct: 1364 YKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSI 1423

Query: 1239 GTGILK------IRQRDAVP 1252
            GTG  K      I ++D VP
Sbjct: 1424 GTGSFKVVKGTNISEKDLVP 1443


>gi|256272995|gb|EEU07959.1| Rpo31p [Saccharomyces cerevisiae JAY291]
 gi|349581277|dbj|GAA26435.1| K7_Rpo31p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 1460

 Score = 1154 bits (2985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/1340 (46%), Positives = 839/1340 (62%), Gaps = 111/1340 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAV-----LGIIHDR 55
            +R P ++ LR+  ++K I+ +C     K  +C  CG +NG+VKKA A      L IIHD 
Sbjct: 127  LRRPGVDNLRRMGILKKILDQCK----KQRRCLHCGALNGVVKKAAAGAGSAALKIIHDT 182

Query: 56   SKVTES---------LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +             + E+   + H  E +  V      LNP+  L LFK++   DCE+L
Sbjct: 183  FRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELL 242

Query: 107  YL-----SERPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
             +     S RPE  I   +  PP+ IRPSV+M D   SNE+D+T +L  I+ T++ ++  
Sbjct: 243  GIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAG 302

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSD------VRGVPFSMQVARPLSGFVQRLKGKQG 214
            L +  S    +  W+ LQ+ VA YINSD      + G        +P+ GF QRLKGKQG
Sbjct: 303  LDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQG 362

Query: 215  RFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQN 274
            RFRGNLSGKRV+++GRTVISPDPNL I EVA+P R+A++LTYPE+V+ +N  KL++ I N
Sbjct: 363  RFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVN 422

Query: 275  GPDKYPGARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
            GP+ +PGA  +  R  D    + YG  R +LA  L+ G +V+RHLEDGDVVLFNRQPSLH
Sbjct: 423  GPNVHPGANYLLKRNEDARRNLRYGD-RMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLH 481

Query: 333  RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
            R+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL
Sbjct: 482  RLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 541

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
             TPK+GE ++A+TQDF+T S+LI+ KD+FYDRA  + +   M DG++  D+P PAI+KP 
Sbjct: 542  LTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGIEHFDIPPPAIMKPY 601

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFR 512
             LWTGKQ+FS+LI+P+ N  V +NL  K K +     ++  +E      M  NDGFV  R
Sbjct: 602  YLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNE------MSQNDGFVIIR 655

Query: 513  NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
             S+++SG + K+ LG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI+
Sbjct: 656  GSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSIGIN 715

Query: 573  DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
            DV P  +L  KK +L+   Y  C+  I  +N+G+L+ +PGC+  QTLEA I  +L+++RE
Sbjct: 716  DVTPADDLKQKKEELVEIAYRKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVRE 775

Query: 633  DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
            + G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF
Sbjct: 776  EVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 835

Query: 693  PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
            P+ +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LED
Sbjct: 836  PKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 895

Query: 753  LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYL 812
            LS QYDN+VR +   IVQF YG DG+DP  MEG + +P+NF+R              + L
Sbjct: 896  LSCQYDNTVRTSANGIVQFTYGGDGLDPLEMEG-NAQPVNFNRSWDHAYNITFNNQDKGL 954

Query: 813  SPQQVSEI-------VEKQLAAYGKESC------------------SEAFLNSLRKFFEG 847
             P  + E        +E++L  Y    C                     F +SLR++  G
Sbjct: 955  LPYAIMETANEILGPLEERLVRYDNSGCLVKREDLNKAEYVDQYDAERDFYHSLREYING 1014

Query: 848  QQDKLDKKIK-----------FVEDIGWDDKSQILEEVTHKTSG---ITEKQLEVFIQTC 893
            +   L    K             E  G D    + + V    S    I+EK +  F++  
Sbjct: 1015 KATALANLRKSRGMLGLLEPPAKELQGIDPDETVPDNVKTSVSQLYRISEKSVRKFLEIA 1074

Query: 894  FSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
              +YR  R+E GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K
Sbjct: 1075 LFKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASK 1134

Query: 954  RISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
             ISTPII A L  +++E AARVVKGR+EKTLL  VA  ++ V    L+ I + +D+ TI 
Sbjct: 1135 VISTPIINAVLVNDNDERAARVVKGRVEKTLLSDVAFYVQDVYKDNLSFIQVRIDLGTID 1194

Query: 1014 DAHLCINADIVKESIVQTPKIKLKQQHIKVL--DFRKLEIFPPVDKSK------------ 1059
               L +  + +  +I +  K+K++   + ++  D   + +FP   K+K            
Sbjct: 1195 KLQLELTIEDIAVAITRASKLKIQASDVNIIGKDRIAINVFPEGYKAKSISTSAKEPSEN 1254

Query: 1060 -IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
             + + +  L+  LP V+VKG+  + R VI  ++  KR+           LLVEG GL+ V
Sbjct: 1255 DVFYRMQQLRRALPDVVVKGLPDISRAVINIRDDGKRE-----------LLVEGYGLRDV 1303

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            M  +G+ G +T +NH+ EV   LGIEAAR  II EIN TM  HGMS+D RH+ LL D+MT
Sbjct: 1304 MCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMT 1363

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
            ++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSECII+G  M +
Sbjct: 1364 YKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSI 1423

Query: 1239 GTGILK------IRQRDAVP 1252
            GTG  K      I ++D VP
Sbjct: 1424 GTGSFKVVKGTNISEKDLVP 1443


>gi|365763066|gb|EHN04597.1| Rpo31p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1460

 Score = 1154 bits (2985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/1340 (46%), Positives = 839/1340 (62%), Gaps = 111/1340 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAV-----LGIIHDR 55
            +R P ++ LR+  ++K I+ +C     K  +C  CG +NG+VKKA A      L IIHD 
Sbjct: 127  LRRPGVDNLRRMGILKKILDQCK----KQRRCLHCGALNGVVKKAAAGAGSAALKIIHDT 182

Query: 56   SKVTES---------LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +             + E+   + H  E +  V      LNP+  L LFK++   DCE+L
Sbjct: 183  FRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELL 242

Query: 107  YL-----SERPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
             +     S RPE  I   +  PP+ IRPSV+M D   SNE+D+T +L  I+ T++ ++  
Sbjct: 243  GIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAG 302

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSD------VRGVPFSMQVARPLSGFVQRLKGKQG 214
            L +  S    +  W+ LQ+ VA YINSD      + G        +P+ GF QRLKGKQG
Sbjct: 303  LDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQG 362

Query: 215  RFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQN 274
            RFRGNLSGKRV+++GRTVISPDPNL I EVA+P R+A++LTYPE+V+ +N  KL++ I N
Sbjct: 363  RFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVN 422

Query: 275  GPDKYPGARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
            GP+ +PGA  +  R  D    + YG  R +LA  L+ G +V+RHLEDGDVVLFNRQPSLH
Sbjct: 423  GPNVHPGANYLLKRNEDARRNLRYGD-RMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLH 481

Query: 333  RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
            R+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL
Sbjct: 482  RLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 541

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
             TPK+GE ++A+TQDF+T S+LI+ KD+FYDRA  + +   M DG++  D+P PAI+KP 
Sbjct: 542  LTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGIEHFDIPPPAIMKPY 601

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFR 512
             LWTGKQ+FS+LI+P+ N  V +NL  K K +     ++  +E      M  NDGFV  R
Sbjct: 602  YLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNE------MSQNDGFVIIR 655

Query: 513  NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
             S+++SG + K+ LG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI+
Sbjct: 656  GSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSIGIN 715

Query: 573  DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
            DV P  +L  KK +L+   Y  C+  I  +N+G+L+ +PGC+  QTLEA I  +L+++RE
Sbjct: 716  DVTPADDLKQKKEELVEIAYRKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVRE 775

Query: 633  DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
            + G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF
Sbjct: 776  EVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 835

Query: 693  PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
            P+ +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LED
Sbjct: 836  PKNSKTPZSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 895

Query: 753  LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYL 812
            LS QYDN+VR +   IVQF YG DG+DP  MEG + +P+NF+R              + L
Sbjct: 896  LSCQYDNTVRTSANGIVQFTYGGDGLDPLEMEG-NAQPVNFNRSWDHAYNITFNNQDKGL 954

Query: 813  SPQQVSEI-------VEKQLAAYGKESC------------------SEAFLNSLRKFFEG 847
             P  + E        +E++L  Y    C                     F +SLR++  G
Sbjct: 955  LPYAIMETANEILGPLEERLVRYDNSGCLVKREDLNKAEYVDQYDAERDFYHSLREYING 1014

Query: 848  QQDKLDKKIK-----------FVEDIGWDDKSQILEEVTHKTSG---ITEKQLEVFIQTC 893
            +   L    K             E  G D    +  +V    S    I+EK +  F++  
Sbjct: 1015 KATALANLRKSRGMLGLLEPPAKELQGIDPDETVPNBVKTSVSQLYRISEKSVRKFLEIA 1074

Query: 894  FSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
              +YR  R+E GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K
Sbjct: 1075 LFKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASK 1134

Query: 954  RISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
             ISTPII A L  +++E AARVVKGR+EKTLL  VA  ++ V    L+ I + +D+ TI 
Sbjct: 1135 VISTPIINAVLVNDNDERAARVVKGRVEKTLLSDVAFYVQDVYKDNLSFIQVRIDLGTID 1194

Query: 1014 DAHLCINADIVKESIVQTPKIKLKQQHIKVL--DFRKLEIFPPVDKSK------------ 1059
               L +  + +  +I +  K+K++   + ++  D   + +FP   K+K            
Sbjct: 1195 KLQLELTIEDIAVAITRASKLKIQASDVNIIGKDRIAINVFPEGYKAKSISTSAKEPSEN 1254

Query: 1060 -IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
             + + +  L+  LP V+VKG+  + R VI  ++  KR+           LLVEG GL+ V
Sbjct: 1255 DVFYRMQQLRRALPDVVVKGLPDISRAVINIRDDGKRE-----------LLVEGYGLRDV 1303

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            M  +G+ G +T +NH+ EV   LGIEAAR  II EIN TM  HGMS+D RH+ LL D+MT
Sbjct: 1304 MCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMT 1363

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
            ++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSECII+G  M +
Sbjct: 1364 YKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSI 1423

Query: 1239 GTGILK------IRQRDAVP 1252
            GTG  K      I ++D VP
Sbjct: 1424 GTGSFKVVKGTNISEKDLVP 1443


>gi|294659690|ref|XP_462102.2| DEHA2G12980p [Debaryomyces hansenii CBS767]
 gi|218511816|sp|Q6BI69.2|RPC1_DEBHA RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
            polymerase III subunit C1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit
 gi|199434160|emb|CAG90588.2| DEHA2G12980p [Debaryomyces hansenii CBS767]
          Length = 1457

 Score = 1152 bits (2981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1327 (46%), Positives = 846/1327 (63%), Gaps = 106/1327 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHD- 54
            +R P ++ LR+  ++K ++++C     K  +C  C ++NG+VKKA      A L I+HD 
Sbjct: 127  LRRPHIDNLRRMKILKKLLEQCK----KQRRCLNCNHVNGVVKKAASGAGPAALKIVHDT 182

Query: 55   ------RSKVTESL--QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
                  ++   + L  +EF    +   E +  V      LNP+ VL LFK+++ +DCE+L
Sbjct: 183  FRWIGKKATPEKDLWDKEFDEVFSRNPELEKFVKRIHDDLNPLKVLNLFKQISPSDCELL 242

Query: 107  YLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
             +      RPE  I   +  PP+ IRPSV+MD +QSNE+D+T +L  I+ T++ ++  + 
Sbjct: 243  GIDSARGGRPEMYIWRYLPAPPVCIRPSVMMD-AQSNEDDLTIKLTEIVWTSSLIKAGIE 301

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPF------SMQVARPLSGFVQRLKGKQGRF 216
            +  S    +  W+ LQ+ VA YINSD              + ++P+ GF QRLKGKQGRF
Sbjct: 302  KGISINNLMEQWDYLQLSVAMYINSDSANPALLPSSGGGSKSSKPIRGFCQRLKGKQGRF 361

Query: 217  RGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGP 276
            RGNLSGKRV+++GRTVISPDPNLKI EVA+P R+A++LTYPE+ + +N +KL++ I +GP
Sbjct: 362  RGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQKLILSGP 421

Query: 277  DKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMS 335
            + +PGA  +++  +   R L    R +LA  L  G +V+RH+EDGD+VLFNRQPSLHR+S
Sbjct: 422  NVHPGANYLLKQNESAKRNLRFGDRVKLAKNLHIGDVVERHIEDGDIVLFNRQPSLHRLS 481

Query: 336  IMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTP 395
            I+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TP
Sbjct: 482  ILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNIHVPQTEEARAEAINLMGVKNNLLTP 541

Query: 396  KNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELW 455
            K+GE ++A+TQDF+T S+L++ KD+F+DRA+   + C M D   + D+P PAI KPV LW
Sbjct: 542  KSGEPIIAATQDFITGSYLVSHKDSFFDRASLVQLLCMMSDADIQFDIPPPAIFKPVMLW 601

Query: 456  TGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSE 515
            TGKQ+FS+LI+P+    V +NL  K KTY+        +       M PNDGFV  R S+
Sbjct: 602  TGKQVFSLLIKPNKKSNVVINLDAKNKTYTPPAKGFPNE-------MSPNDGFVIIRGSQ 654

Query: 516  LISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQ 575
            ++SG + K+TLG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI+DV 
Sbjct: 655  ILSGVMDKSTLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARYLGNRGFSIGINDVI 714

Query: 576  PKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAG 635
            P  +L  KK  ++ + Y  C+  I  YN G L+ +PGC+  QTLEA I  +L+++RE+ G
Sbjct: 715  PGSDLKQKKELMVEQAYLKCDELIDLYNRGNLETQPGCNEEQTLEAKIGGLLSKVREEVG 774

Query: 636  KACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRK 695
            + C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF + 
Sbjct: 775  EICINELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKN 834

Query: 696  AKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI 755
            +K P +KGFV NSF+SGL+  EF FH++ GREGLVDTAVKTA+TGYMSRRL+K+L+DLS 
Sbjct: 835  SKTPQSKGFVRNSFFSGLTPPEFLFHSISGREGLVDTAVKTAETGYMSRRLMKSLDDLSA 894

Query: 756  QYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQ 815
            QYD++VRN+   IVQF YG DG+DP +MEG +  P+NF R              + L P 
Sbjct: 895  QYDHTVRNSSNGIVQFTYGGDGLDPFDMEGDA-RPVNFVRQWDHAYNITFDIEDKGLLPY 953

Query: 816  QVSEIV-------EKQLAAY------------------GKESCSEAFLNSLRKFFEGQQD 850
            Q+ E+V       E +L  Y                   +      F  S+R+F   +  
Sbjct: 954  QIIELVDSILHPLEDRLVRYDNVGKIIPLEDSDKIEYIDQNDAEREFYQSIREFTTNKAT 1013

Query: 851  KL----DKKI------KFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVK 900
            KL    +KK+      +  ED    D+S       ++ S ++   +  F++ C  +Y   
Sbjct: 1014 KLAEIREKKMLKPFLTEPAEDFIRLDESDESLVAINQLSKVSANSINKFLEQCIYKYSRA 1073

Query: 901  RVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPII 960
            +VE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K ISTPII
Sbjct: 1074 KVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPII 1133

Query: 961  TAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCIN 1020
             + L  +D+E AARVVKGR+EKTLL  VA  I+ V  + +A + I +D+ TI+   L +N
Sbjct: 1134 NSVLVNDDDEIAARVVKGRVEKTLLEDVAYFIEDVYKNNMAYLSIKIDLNTIEKLQLELN 1193

Query: 1021 ADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK--------------------- 1059
             + +  SI   PK+K+    + V    ++ +   + + K                     
Sbjct: 1194 IESIAHSIANAPKLKILAGDVSVTGKDRINVLVTLREPKSINLMKNASADYKGTDASIVN 1253

Query: 1060 -IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
             + F +  LK  LP + +KG+  + R VI         ++++G+K+   LLVEG GL+ V
Sbjct: 1254 SLFFRMQHLKRALPRICIKGLPDISRAVI--------NIRDDGKKE---LLVEGYGLKEV 1302

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            M  +G+ G KT +NHI EV Q LGIEAAR  II EI+ TM  HGMS+D RH+ LL D+MT
Sbjct: 1303 MSTDGVVGTKTSTNHILEVFQVLGIEAARASIIGEIDYTMSKHGMSVDPRHIQLLGDVMT 1362

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
            ++GEVLGITRFG+ KM  SVL LASFEKT DHLF+AS   ++D+IEGVSECII+G  M +
Sbjct: 1363 YKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKNDKIEGVSECIILGQTMNI 1422

Query: 1239 GTGILKI 1245
            GTG  K+
Sbjct: 1423 GTGAFKL 1429


>gi|50549343|ref|XP_502142.1| YALI0C22550p [Yarrowia lipolytica]
 gi|49648009|emb|CAG82462.1| YALI0C22550p [Yarrowia lipolytica CLIB122]
          Length = 1483

 Score = 1152 bits (2979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/1344 (46%), Positives = 839/1344 (62%), Gaps = 122/1344 (9%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----- 55
            +R P ++ LR+  ++K + ++C     K  +C  C  ING+VKKA   L IIHD+     
Sbjct: 135  LRRPGIDNLRRMQILKKVNEQCK----KQRRCVHCNSINGVVKKA-GPLKIIHDKFRHVG 189

Query: 56   SKVTESLQEFASAITHTKESKAAVN----VATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
             K+ E   EF ++    KES   V      A   LNP+ V  LF+ +   DCE+L +   
Sbjct: 190  KKIPEEKTEFDNSFNTAKESIPDVERLQKKAMDDLNPLKVFNLFREILPMDCELLGMDPG 249

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAF 168
              RPE  I   +  PP+ IRPSV+ D S SNE+D+T +L  I+ T+A ++  L +  +  
Sbjct: 250  KGRPETYIWRYMPAPPVCIRPSVMQD-SASNEDDLTVKLTEIVWTSAIIEAGLKQGMAVA 308

Query: 169  KSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYT 228
              +  WE LQ+ VA YINSD    P     ++P+    QRLKGKQGRFRGNLSGKRV+++
Sbjct: 309  SLMEQWELLQLAVAVYINSDTPQGP-GQSASKPIRALTQRLKGKQGRFRGNLSGKRVDFS 367

Query: 229  GRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRY 287
            GRTVISPDPNL+I +VA+P R+A+ILTYPERV+ HNIEKLR  +  GP ++PGA  + + 
Sbjct: 368  GRTVISPDPNLRIDQVAVPDRVAKILTYPERVTSHNIEKLRNLVITGPSQHPGANYLFKK 427

Query: 288  PDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
             +   R L    R ++A  L+ G +V+RHLEDGDVVLFNRQPSLHR+SI+ H A+I PWR
Sbjct: 428  GESLRRNLRFGDRAKIAERLEIGDVVERHLEDGDVVLFNRQPSLHRLSILAHFAQIRPWR 487

Query: 348  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQD 407
            T R NE VC PYNADFDGDEMN+HVPQTEEARTEA+ LMGV++NL TP++GE ++A+TQD
Sbjct: 488  TFRLNECVCTPYNADFDGDEMNLHVPQTEEARTEAMCLMGVKHNLVTPRSGEPIIAATQD 547

Query: 408  FLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRP 467
            F+T SFLI++KD   DR  F  +   M DG  + D+P PAI KPV+LWTGKQ+FS+LIRP
Sbjct: 548  FITGSFLISKKDYMIDRRTFCQLLAMMSDGDMQFDIPPPAIQKPVQLWTGKQVFSLLIRP 607

Query: 468  HANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLG 527
            + + +V +NL  K KT+         D       M PNDGF+  RNS+++ G + KATLG
Sbjct: 608  NKSSKVIINLDAKNKTFQPPPQGYPRD-------MSPNDGFLVIRNSQVMCGAMDKATLG 660

Query: 528  NGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKL 587
            +G KD ++  +LRDYG    +G MNR+AKL ARW+G  GFSIGI DV P  ELS  K  L
Sbjct: 661  DGKKDSVFYSILRDYGPDEAAGAMNRMAKLCARWLGGRGFSIGISDVTPGAELSSTKEIL 720

Query: 588  ISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNS 647
            + + Y  C+  I+   +GKL+ +PGC  AQTLEA I  +L+++RE+ G+ C+  L   N+
Sbjct: 721  VEQAYAKCDELIEALAQGKLEPQPGCTPAQTLEAKIGGLLSKVREEVGEVCIKELEKSNA 780

Query: 648  PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVAN 707
            PLIM+ CGSKGS +N+SQMVA VGQQ + G+R PNGF DRSLPHF + +  P +KGFV N
Sbjct: 781  PLIMATCGSKGSTLNVSQMVAVVGQQIISGKRVPNGFQDRSLPHFRKFSVTPPSKGFVRN 840

Query: 708  SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
            SFYSGL   EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD++VR +   
Sbjct: 841  SFYSGLDPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSARYDSTVRTSSNG 900

Query: 768  IVQFLYGDDGMDPANMEGKSGEPLNFDRLL-----MKVKATCPPAGQRY---------LS 813
            +VQF YG DG+DP +MEG +  P++F+R       +  K    P  +           L 
Sbjct: 901  VVQFRYGGDGLDPFDMEGDA-RPVDFNRTWTHCEYISSKLGIEPEAETINVSSVPDTPLK 959

Query: 814  PQQVSEIVEKQL----------------------AAYGKESCSEA---------FLNSLR 842
            P ++  +VE+Q+                      AA  + S  +          FL S+R
Sbjct: 960  PFEIMAVVEEQIFALEQKLQRMDNSGNMLSVATKAARDRASAEKYVDEVDPRRDFLQSIR 1019

Query: 843  KFFEGQQDKLDKK------IKFVEDIGWDD---------KSQILEEVTHKTSGITEKQLE 887
             F   + ++L         +  +E    D+           + +    ++   I+ + ++
Sbjct: 1020 GFIYTKAEELATVRESRGLMGLLEKPDGDEYDGQDFDLFAPKAVIRAVNQVCRISHRMVD 1079

Query: 888  VFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKE 947
             F+Q C  +Y+  +VE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKE
Sbjct: 1080 TFLQACLRKYQKAQVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKE 1139

Query: 948  IINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIAL 1007
            IIN +K ISTPIIT  L       AAR+VKGRIEKTLLG +A  I+   +   AS+ + +
Sbjct: 1140 IINASKAISTPIITTVLNNETELQAARIVKGRIEKTLLGDIAHYIQDEYSYAKASVRVRI 1199

Query: 1008 DMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKL------------------ 1049
            D  TI    L I+ D ++E+I++ PK+KLK   + + + + +                  
Sbjct: 1200 DFNTIDHLLLEIDMDQIREAIIKAPKLKLKPGQVSIEEEKYIRVDIESDAVKKNGSTTII 1259

Query: 1050 ----EIFPPVDKSKIHFELYS--LKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEK 1103
                EIF    +S     L +  LK VLP V+VKG   + R VI  +EK+          
Sbjct: 1260 DTDGEIFEEGVESDTAMFLRTQHLKRVLPNVVVKGFTDISRAVINIREKD---------- 1309

Query: 1104 KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGM 1163
              + LLVEG GL+ VM   G+ G +T +NH+ EV++ LGIEAAR  II EI+ TM  HGM
Sbjct: 1310 NTHELLVEGYGLRHVMTTSGVIGTQTSTNHVLEVKEVLGIEAARASIIHEIDYTMSKHGM 1369

Query: 1164 SIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRI 1223
            S+D RH+ LL D+MT++G+VLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +
Sbjct: 1370 SVDPRHITLLGDVMTYKGDVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKTDDV 1429

Query: 1224 EGVSECIIMGIPMPLGTGILKIRQ 1247
            EGVSECII+G  M +GTG  K+ Q
Sbjct: 1430 EGVSECIILGQGMSIGTGAFKVLQ 1453


>gi|401623626|gb|EJS41719.1| rpo31p [Saccharomyces arboricola H-6]
          Length = 1460

 Score = 1150 bits (2975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1342 (46%), Positives = 845/1342 (62%), Gaps = 115/1342 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAV-----LGIIHDR 55
            +R P ++ LR+  ++K I+ +C     K  +C  CG +NG+VKKA A      L IIHD 
Sbjct: 127  LRRPGVDNLRRMGILKKILDQCK----KQRRCLHCGALNGVVKKAAAGAGSAALKIIHDT 182

Query: 56   SKVTES---------LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +             + E+   + H  E +  V      LNP+  L LFK++   DCE+L
Sbjct: 183  FRWVGKKSAPEKDIWVGEWKEVLGHNPELERYVKRCMDDLNPLKTLNLFKQVKSADCELL 242

Query: 107  YL-----SERPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
             +     S RPE  I   +  PP+ IRPSV+M D   SNE+D+T +L  I+ T++ ++  
Sbjct: 243  GIDTTVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAG 302

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSD------VRGVPFSMQVARPLSGFVQRLKGKQG 214
            L +  S    +  W+ LQ+ VA YINSD      + G        +P+ GF QRLKGKQG
Sbjct: 303  LEKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQG 362

Query: 215  RFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQN 274
            RFRGNLSGKRV+++GRTVISPDPNL I EVA+P R+A++LTYPE+V+ +N  KL++ + N
Sbjct: 363  RFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELVVN 422

Query: 275  GPDKYPGARMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
            GP+ +PGA  +   +  AR  + YG  R +LA  L+ G +V+RHLEDGDVVLFNRQPSLH
Sbjct: 423  GPNVHPGANYLLKKNEDARRNLRYGD-RMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLH 481

Query: 333  RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
            R+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL
Sbjct: 482  RLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 541

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
             TPK+GE ++A+TQDF+T S+LI+ KD+FYDRA  + +   M DG+++ D+P PAI+KP 
Sbjct: 542  LTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGVEQFDIPPPAIMKPY 601

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFR 512
             LWTGKQ+FS+LI+P+ N  V +NL  K K +     ++   E      M  NDGFV  R
Sbjct: 602  YLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPSE------MSQNDGFVIIR 655

Query: 513  NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
             S ++SG + K+ LG+G K  ++  +LRDYG    +  MNR++KL AR++GN GFSIGI+
Sbjct: 656  GSNILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMSKLCARFLGNRGFSIGIN 715

Query: 573  DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
            DV P  +L  KK +L+   Y  C+  I E+N G+L+ +PGC+  QTLEA I   L+++RE
Sbjct: 716  DVTPADDLKQKKEELVEIAYRKCDELITEFNRGELETQPGCNEEQTLEAKIGGFLSKVRE 775

Query: 633  DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
            + G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF
Sbjct: 776  EVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 835

Query: 693  PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
            P+ +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LED
Sbjct: 836  PKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 895

Query: 753  LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR---------LLMKVKAT 803
            LS QYDN+VR +   IVQF YG DG+DP  MEG + +P+NF+R            K +  
Sbjct: 896  LSCQYDNTVRTSANGIVQFTYGGDGLDPLEMEG-NAQPVNFNRSWDHAYNITFDNKDEGL 954

Query: 804  CPPAGQRYLSPQQVSEIVEKQLAAYGKESC------------------SEAFLNSLRKFF 845
             P A  +  +  +V   +E++L  Y    C                     F  SLR++ 
Sbjct: 955  LPYAIMK--TANEVLRPLEERLIRYDNSGCLVKAEDKDKAEYVDQYDAERDFYRSLREYI 1012

Query: 846  E-------------GQQDKLDKKIKFVEDIGWDDK-SQILEEVTHKTSGITEKQLEVFIQ 891
                          G  + L+   K +E +  D+     ++    +   I+EK ++ F++
Sbjct: 1013 NLKATALANLRRSRGMSELLEAPEKILEGVNPDENVPDNIKISVSQLYRISEKSVKKFLE 1072

Query: 892  TCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIING 951
                +YR  R+E GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN 
Sbjct: 1073 IALFKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINA 1132

Query: 952  AKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
            +K ISTPII A L  +++E AARVVKGR+EKTLL  VA  ++ V    L+ I + +D+ T
Sbjct: 1133 SKVISTPIINAVLVNDNDERAARVVKGRVEKTLLSDVAYYVQDVYKDNLSFIQVRIDLAT 1192

Query: 1012 IQDAHLCINADIVKESIVQTPKIKLKQQHIKVL--DFRKLEIFPPVDKSK---------- 1059
            I    L +  + +  +I +  K+K++   + ++  D   + +FP   K+K          
Sbjct: 1193 IDKLQLELTIEDIAVAITRASKLKIQASDVNIIGKDRIAINVFPDGYKAKSISTSAKEPS 1252

Query: 1060 ---IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQ 1116
               + + +  L+  +P V+VKG+  + R VI         +++NG+++   LLVEG GL+
Sbjct: 1253 ENDVFYRMQQLRRAIPDVVVKGLPDISRAVI--------NIRDNGKRE---LLVEGYGLR 1301

Query: 1117 AVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADL 1176
             VM  +G+ G KT +NH+ EV   LGIEAAR  I+ EIN TM  HGMS+D RH+ LL D+
Sbjct: 1302 DVMCTDGVIGSKTTTNHVLEVFSVLGIEAARYSIVREINYTMSNHGMSVDPRHIQLLGDV 1361

Query: 1177 MTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPM 1236
            MT++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSECII+G  M
Sbjct: 1362 MTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTM 1421

Query: 1237 PLGTGILK------IRQRDAVP 1252
             +GTG  K      I + D VP
Sbjct: 1422 SIGTGSFKVVKGTNISENDLVP 1443


>gi|430813213|emb|CCJ29412.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 1390

 Score = 1149 bits (2972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/1274 (47%), Positives = 817/1274 (64%), Gaps = 77/1274 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            +R  + + L+K+ + K I   C     K   CP C    G+VKK V  L IIH++ K  +
Sbjct: 141  LRKAETDNLKKSQIYKRINDTCK----KVRICPNCQSTQGVVKK-VGALKIIHEKFKY-K 194

Query: 61   SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL---YLSERPEKLII 117
              + F + +  T + K  ++ A   LNP+ VL LFK++   DCE+L    L  RPE  I 
Sbjct: 195  FQKTFETILKSTPDMKTHLSKAHDDLNPLKVLNLFKQIPPMDCELLGINPLKGRPEMFIW 254

Query: 118  TNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETL 177
              I  PP+ IRPS+  DG+ S E+D+T +L  II TN+ ++  L +       +  W+ L
Sbjct: 255  QCIPAPPVCIRPSISQDGA-STEDDLTVKLTEIIWTNSLIKSALEKGTPIQNLMEQWDYL 313

Query: 178  QVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDP 237
            Q+ VA YINS++ G+  S    +P+ GF QRLKGKQGRFRGNLSGKRV+++ RTVI PDP
Sbjct: 314  QLCVAMYINSELPGIS-SQANTKPMRGFCQRLKGKQGRFRGNLSGKRVDFSARTVIGPDP 372

Query: 238  NLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-RYPDGTARVLY 296
            NL I ++AIP R+A+ILTYPE+V+ +NIE+L++ I NGPD +PGA  I    +G  + L 
Sbjct: 373  NLSIDQIAIPERIAKILTYPEKVTYYNIEQLKKAIINGPDIHPGANYIMNQENGFKKFLK 432

Query: 297  GKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 356
               R ++A+ELK G +V+RH+ D D+VLFNRQPSLH++SI+CH+ R  PW+T R NE VC
Sbjct: 433  FGDRQKMALELKIGDVVERHIRDDDIVLFNRQPSLHKLSILCHKVR--PWKTFRLNECVC 490

Query: 357  NPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
            NPYNADFDGDEMN+HVPQTEEAR EA+ LM V+NNL TP+NG+ ++A+ QDF+T+S+LI+
Sbjct: 491  NPYNADFDGDEMNLHVPQTEEARAEAIELMSVKNNLVTPRNGDPIIAAIQDFVTASYLIS 550

Query: 417  RKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
            +KD FYDR  F+ +C +M D    +DLP+P I+KPV              P+        
Sbjct: 551  QKDNFYDRKTFTHICSFMVDANMHIDLPSPVIIKPV--------------PYG------- 589

Query: 477  LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
               +E  Y       +G     I  +C NDG++  R SE++ G + K+T+G+G K+ ++ 
Sbjct: 590  ---QESKYLMSFSSPKG-----IPDLCINDGYLLIRGSEIMCGVMDKSTVGDGKKNSIFY 641

Query: 537  VLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCN 596
            V+L++YG    +  MNRLAKL ARWIGNHGFSIGI+DVQP   L  KK  L+   Y+ C+
Sbjct: 642  VILKNYGPTEAAEAMNRLAKLCARWIGNHGFSIGINDVQPGVLLKKKKESLVKAAYQSCD 701

Query: 597  VKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
              I   + GKL+ +PGCDA QTLEA ++ IL+++R+D G+ CM  L   N+ LIM+ CGS
Sbjct: 702  DLIYALSSGKLENQPGCDAEQTLEAKVSGILSKVRDDVGQICMSELARTNASLIMATCGS 761

Query: 657  KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAK-EPAAKGFVANSFYSGLSA 715
            KGS IN+SQMV+CVGQQ + G R PNGF DRSLPHF +  K +P AKGFV NSFYSGL+ 
Sbjct: 762  KGSKINVSQMVSCVGQQIISGSRVPNGFQDRSLPHFQKNCKFQPPAKGFVKNSFYSGLTP 821

Query: 716  TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGD 775
            TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS+QYD +VRN+   IVQF+YGD
Sbjct: 822  TEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSLQYDGTVRNSSSGIVQFIYGD 881

Query: 776  DGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSE 835
            DG+DP  +EG +  P+ F R              + L P ++ E   K L     ++C+E
Sbjct: 882  DGLDPTYLEGDNC-PVEFSRTWNHCHNITSKIQSKGLLPYEIIETTRKYLENPKFKNCTE 940

Query: 836  AFLNSLRKFFEGQQDKLDKKIK-------FVEDIGWDDKSQILEEVTHKTSG-------- 880
             F NS+  F +    +    I+       F+E         I+ E + +           
Sbjct: 941  NFKNSILNFIQKNIAEHLAAIRERRNLPSFLEHTNDSKYKNIINEESLEIDSKKTVDSIF 1000

Query: 881  -ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNIT 939
             +T+ QL  ++Q C  +Y   +VE GTA+GA+GAQSIGEPGTQMTLKTFHFAGVASMN+T
Sbjct: 1001 KVTKHQLLTYLQLCLEKYIKSKVEPGTAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVT 1060

Query: 940  QGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSR 999
             GVPRIKEIIN AK ISTPI+T +L   D+  +ARVVKGR+EKT +  +   I+ V    
Sbjct: 1061 LGVPRIKEIINAAKIISTPIVTCKLVAEDDTRSARVVKGRVEKTYMKDITTFIEEVYGPT 1120

Query: 1000 LASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDK-- 1057
             + I I +D  T+    L I  D +  SI Q PK+K+    + +    K++++   D   
Sbjct: 1121 SSYIGIKIDWNTVNRLQLEITIDEIAASIWQAPKLKISNTKVSISSEDKIKVYVSNDDKD 1180

Query: 1058 ---SKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTG 1114
                +++++L   K  LP VIVKGI +  R VI   EK K             LLVEG G
Sbjct: 1181 KEFDEVYYKLQHYKRTLPHVIVKGIPSTSRAVINIDEKGKNT-----------LLVEGYG 1229

Query: 1115 LQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLA 1174
            L+ V+  +G+ G KT +NH+ E++Q LGIEAAR  II EI+ TM +HGM+ID RH+MLL 
Sbjct: 1230 LRDVINTDGVVGTKTSTNHVMEMKQVLGIEAARASIIKEIDITMSSHGMNIDPRHVMLLG 1289

Query: 1175 DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGI 1234
            D+MT+RGE+LGITRFG+ KM  SVLMLASFEKT DHLF+A+     D IEGVSECII+G 
Sbjct: 1290 DVMTYRGEILGITRFGVAKMKNSVLMLASFEKTTDHLFDAAARLTKDSIEGVSECIILGK 1349

Query: 1235 PMPLGTGILKIRQR 1248
            P P+GTG+ ++ +R
Sbjct: 1350 PAPIGTGLFRLVRR 1363


>gi|366996196|ref|XP_003677861.1| hypothetical protein NCAS_0H02040 [Naumovozyma castellii CBS 4309]
 gi|342303731|emb|CCC71514.1| hypothetical protein NCAS_0H02040 [Naumovozyma castellii CBS 4309]
          Length = 1460

 Score = 1149 bits (2971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/1327 (46%), Positives = 845/1327 (63%), Gaps = 105/1327 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAV-----LGIIHDR 55
            +R P ++ LR+  ++K ++ +C     K  +C +CG +NG+VKKA A      L IIHD 
Sbjct: 127  LRRPGVDNLRRMGILKKVLDQCK----KQRRCLQCGALNGVVKKAAAGAGPASLKIIHDT 182

Query: 56   SKVT---------ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +           + + ++   ++H  E +  +   +  LNP+  L LFK++   DCE+L
Sbjct: 183  FRWVGKKSAPEKDKWVGDWKEVLSHHPELERFMKRCSDDLNPLKTLNLFKQIKPEDCELL 242

Query: 107  YL-----SERPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
             +     S RPE  I   +  PP+ IRPSV+M D   SNE+D+T +L  I+ T++ ++  
Sbjct: 243  GIDSTVKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAG 302

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSD------VRGVPFSMQVARPLSGFVQRLKGKQG 214
            L +  S    +  W+ LQ+ VA YINSD      + G        +P+ GF QRLKGKQG
Sbjct: 303  LEKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGASSGGGKVKPIRGFCQRLKGKQG 362

Query: 215  RFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQN 274
            RFRGNLSGKRV+++GRTVISPDPNL I EVA+P R+A++LT+PE+V+ +N +KL+Q I N
Sbjct: 363  RFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNKQKLQQLIIN 422

Query: 275  GPDKYPGARMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
            GP+ +PGA  +   +  AR  + YG  R +LA  L+ G +V+RHLEDGDVVLFNRQPSLH
Sbjct: 423  GPNVHPGANYLLKKNEDARRNLRYGD-RIKLAKNLQHGDVVERHLEDGDVVLFNRQPSLH 481

Query: 333  RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
            R+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL
Sbjct: 482  RLSILSHFAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 541

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
             TPK+GE ++A+TQDF+T S+LI+ KD+F+DRA  + +   M +G  R D+P PAI+KP 
Sbjct: 542  LTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLTQLLSMMSNGTLRFDIPPPAIMKPY 601

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFR 512
             +WTGKQ+FS+LIRP+    V +NL  K K +     +   +E      M  NDG+V  R
Sbjct: 602  YMWTGKQVFSLLIRPNKESPVVINLDAKNKVFMPPKYKDYPNE------MSRNDGYVVIR 655

Query: 513  NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
             S ++SG + K+ LG+G K  ++  +LRDYG    +  MNR++KL AR++GN GFSIGI 
Sbjct: 656  GSNILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMSKLCARYLGNRGFSIGIS 715

Query: 573  DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
            DV P  +L  KK +L+   Y  C+  I ++++GKL+ +PGC+  QTLEA I  +L+++RE
Sbjct: 716  DVTPADDLKQKKEELVEIAYAKCDELIDQFHKGKLETQPGCNEEQTLEAKIGGLLSKVRE 775

Query: 633  DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
            + G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF
Sbjct: 776  EVGDVCINELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 835

Query: 693  PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
             + +K P +KGFV NSF+SGL+  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LED
Sbjct: 836  QKNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 895

Query: 753  LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR----------------- 795
            LS QYDN+VR +   IVQF YG DG+DP  MEG + +P+NF+R                 
Sbjct: 896  LSCQYDNTVRTSSNGIVQFTYGGDGLDPMEMEG-NAKPVNFNRSWDHAINITFSNLEKGL 954

Query: 796  ----LLMKVKATCPPAGQRYLSPQQVSEIVEK---QLAAYGKESCSEA-FLNSLRKFFEG 847
                ++ K      P  +R +    V E+V K   + A Y  +  +E  F  SLR + + 
Sbjct: 955  LPYEIMEKTNEILKPLEERLIRYDNVGELVPKKDNEKAEYVDQFDAERDFYRSLRDYIQE 1014

Query: 848  QQDKLDK------KIKFVEDIG-----WDDKSQILEEVTHKTS---GITEKQLEVFIQTC 893
            + D L +       ++   + G      D   +I E + H       ITEK ++ F++  
Sbjct: 1015 KADILARVRKSRGMLEMSSEPGEELRKLDPDERITESIKHSVDQLYKITEKSVQTFLEIA 1074

Query: 894  FSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
              +YR  RVE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K
Sbjct: 1075 LYKYRKARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASK 1134

Query: 954  RISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
             ISTPII A L   ++E AARVVKGRIEKTLL  +A  I+ V    L+ I + +D+ TI+
Sbjct: 1135 VISTPIINAVLVNENDERAARVVKGRIEKTLLSDIAYYIQDVYKDNLSFIQVRVDLGTIE 1194

Query: 1014 DAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEI--FPPVDKSK------------ 1059
               L +  + +  +I + PK+K++   + +L   K+ I  +P   K+K            
Sbjct: 1195 KLQLELTIEDIAVAITKAPKLKIQTSDVNILGKDKIAINVYPDGYKAKSISTMAKEPSNN 1254

Query: 1060 -IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
             + + +  L+ VLP ++VKG   + R VI  ++  KR+           LLVEG GL+ V
Sbjct: 1255 AVFYRMQHLRRVLPSIVVKGFGDISRAVINIRDDGKRE-----------LLVEGYGLRDV 1303

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            M  +G+ G KT +NHI EV   LGIEAAR  II EI+ TM  HGMS+D RH+ LL D+MT
Sbjct: 1304 MCTDGVIGMKTTTNHILEVNNVLGIEAARSSIIGEIDYTMSNHGMSVDPRHIQLLGDVMT 1363

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
            ++GE+LGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSECII+G  M +
Sbjct: 1364 YKGEILGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSI 1423

Query: 1239 GTGILKI 1245
            GTG  K+
Sbjct: 1424 GTGSFKV 1430


>gi|50309797|ref|XP_454912.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644047|emb|CAG99999.1| KLLA0E21253p [Kluyveromyces lactis]
          Length = 1457

 Score = 1146 bits (2964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/1333 (46%), Positives = 847/1333 (63%), Gaps = 107/1333 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAV-----LGIIHDR 55
            +R P M+ LR+ +++K I+ +C     K  +C  CG +NG+VKKA A      L IIHD 
Sbjct: 127  LRRPGMDNLRRMNILKKILDQCK----KQRRCFECGELNGVVKKAAAGSGSAALKIIHDT 182

Query: 56   SKVT---------ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +           + + ++   + +  E +  V      LNP+ VL LFK++   DCE+L
Sbjct: 183  FRWVGKKSAPEKEQWIGDWKQVLENNPELERYVKRCMDDLNPLKVLNLFKQIKPNDCELL 242

Query: 107  YL-----SERPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
             +     S RPE  I   +  PP+ IRPSV+M D   SNE+D+T +L  I+ T++ ++  
Sbjct: 243  GIDSTSKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAG 302

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSDVRG---VPFSMQV-ARPLSGFVQRLKGKQGRF 216
            L +  S    +  W+ LQ+ VA YINSD      +P S    ++P+ GF QRLKGKQGRF
Sbjct: 303  LEKGISINNMMEQWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQGRF 362

Query: 217  RGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGP 276
            RGNLSGKRV+++GRTVISPDPNL I EVA+P R+A+ILTYPE+V+ +N  KL+Q + NGP
Sbjct: 363  RGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGP 422

Query: 277  DKYPGARMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRM 334
              +PGA  +   +  AR  + YG  R +LA +L+ G +V+RH+EDGDVVLFNRQPSLHR+
Sbjct: 423  KVHPGANYLLKKNEDARRNLRYGD-RVKLAKQLQYGDVVERHIEDGDVVLFNRQPSLHRL 481

Query: 335  SIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCT 394
            SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL T
Sbjct: 482  SILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLT 541

Query: 395  PKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVEL 454
            PK+GE ++A+TQDF+T S+LI+ KD+F+DRA  + +   M D   + D+P P+I+KP  L
Sbjct: 542  PKSGEPIIAATQDFITGSYLISHKDSFFDRAQLTQLLSMMSDSNLQFDIPPPSIMKPHYL 601

Query: 455  WTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNS 514
            WTGKQ+FS+LI+P     V +NL  K K Y     +   +E      M  NDGFV  R S
Sbjct: 602  WTGKQVFSLLIKPSRKSPVVINLDAKNKVYLPPPKKEYPNE------MSQNDGFVLIRGS 655

Query: 515  ELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDV 574
             ++SG + K+ LG+G K  ++  +LRDYG +  +  MNR+AKL AR++GN GFSIGI+DV
Sbjct: 656  NILSGVMDKSVLGDGKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIGINDV 715

Query: 575  QPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDA 634
             P  +L  KK +++   Y  C+  I  +N+GKL+ +PGC+  QTLEA I  +L+++RE+ 
Sbjct: 716  TPGSDLKQKKEQMVESAYAKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEV 775

Query: 635  GKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPR 694
            G+ C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHFP+
Sbjct: 776  GEVCIRELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPK 835

Query: 695  KAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLS 754
             +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS
Sbjct: 836  NSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLS 895

Query: 755  IQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSP 814
             QYDN+VR +   IVQF YG DG+DP +MEG + +P+NF+R                L P
Sbjct: 896  CQYDNTVRTSSNGIVQFTYGGDGLDPLDMEG-NAQPVNFNRSWTHANNLTLNDNSPGLLP 954

Query: 815  QQ-------VSEIVEKQLAAY---GKE---------------SCSEAFLNSLRKFF---- 845
             Q       + + +E +L  Y   G+E                   +F  SLR+F     
Sbjct: 955  YQIIAETNVILQPLENKLKRYDNIGQELRKEDEHKDEYIDQFDAERSFYQSLREFMTEKA 1014

Query: 846  ---------EGQQDKLDKKIKFVEDIGWDDKSQILEEVT---HKTSGITEKQLEVFIQTC 893
                      G ++ +D+  + + +  WD+   +   +T   ++   I++  ++ F+   
Sbjct: 1015 LTLASLRGERGLKELVDEPAEELREFNWDE--NVPASITIALNQLCKISKILVQKFLSIA 1072

Query: 894  FSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
             S+Y   RVE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K
Sbjct: 1073 ISKYHRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASK 1132

Query: 954  RISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
             ISTPII A L  +++E AARVVKGR+EKTLL  V+  ++ +    +A + I +D ETI+
Sbjct: 1133 VISTPIINAVLVNDNDERAARVVKGRVEKTLLSDVSFYVQDIYRDNMAFLQIKIDSETIE 1192

Query: 1014 DAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD---------------KS 1058
               L +  + +  +I + PK+K+    I ++   K+ I    D                +
Sbjct: 1193 KLQLELTLEDIVVAIAKAPKLKIGTNDISIIGKDKINIAVSSDGKSMKSISTAMKEPEPN 1252

Query: 1059 KIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
            ++ + +  L+  LP ++VKG   + R VI  ++  KR+           LLVEG GL+ V
Sbjct: 1253 EVFYRMQQLRRALPHIVVKGFSDISRAVINIRDDGKRE-----------LLVEGYGLRDV 1301

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            M  +G+ G KTK+NHI EV   LGIEAAR CII+EI+ TM  HGMS+D RH+ LL D+MT
Sbjct: 1302 MTTDGVIGSKTKTNHILEVYDVLGIEAARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMT 1361

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
            ++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   ++D +EGVSECII+G  M +
Sbjct: 1362 YKGEVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSI 1421

Query: 1239 GTGILKIRQRDAV 1251
            GTG  K+ +   V
Sbjct: 1422 GTGSFKVVKNTVV 1434


>gi|156841103|ref|XP_001643927.1| hypothetical protein Kpol_1016p9 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156114557|gb|EDO16069.1| hypothetical protein Kpol_1016p9 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1460

 Score = 1145 bits (2963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/1335 (46%), Positives = 840/1335 (62%), Gaps = 105/1335 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA-----VLGIIHDR 55
            +R P ++ L++  ++K I+ +C     K  +C  CG +NG+VK+A A      L IIHD 
Sbjct: 127  LRRPGIDNLKRMAIIKKILDQCK----KQRRCLTCGALNGVVKRAAAGSGSASLKIIHDT 182

Query: 56   SKVT---------ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +           E + ++   + +  E +     +   LNP+  L LFK++   DCE+L
Sbjct: 183  FRWVGKKSSPEKDEWVGDWEKVLANNPELERFAKRSMDDLNPLKTLNLFKQIRPEDCELL 242

Query: 107  YLSE-----RPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
             +       RPE  I   +  PP+ IRPSV+M D   SNE+D+T +L  I+ T++ ++  
Sbjct: 243  GIDSTVKAGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAG 302

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSD------VRGVPFSMQVARPLSGFVQRLKGKQG 214
            L +  S    +  W+ LQ+ VA YINSD      + G       A+P+ GF QRLKGKQG
Sbjct: 303  LEKGISINNMMEHWDYLQLSVAMYINSDSVNPSMMPGASSGGAKAKPIRGFCQRLKGKQG 362

Query: 215  RFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQN 274
            RFRGNLSGKRV+++GRTVISPDPNL I EVA+P R+A++LTYPE+V+ +N EKL+  + N
Sbjct: 363  RFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNREKLQALVIN 422

Query: 275  GPDKYPGARMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
            GP+ +PGA  I   +  AR  + YG  R ++A +L+ G IV+RHLEDGD+VLFNRQPSLH
Sbjct: 423  GPNVHPGANYILKANEEARRNLRYGD-RLKIAKQLRVGDIVERHLEDGDIVLFNRQPSLH 481

Query: 333  RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
            R+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL
Sbjct: 482  RLSILSHFAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNL 541

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
             TPK+GE ++A+TQDF+T S+LI+ KDTF DRA F+ +   M D   + D+P P I+KP 
Sbjct: 542  LTPKSGEPIIAATQDFITGSYLISHKDTFLDRATFTQLLSMMSDSNLQFDIPPPTIIKPY 601

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFR 512
             LWTGKQLFS+LI+P+ +  V +NL  K K +     ++  +E      M  NDGFV  R
Sbjct: 602  CLWTGKQLFSLLIKPNKDSPVVINLDAKNKVFIPPKSKSLPNE------MSQNDGFVVIR 655

Query: 513  NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
             S+++SG + K+ LG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI 
Sbjct: 656  GSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARYLGNRGFSIGIS 715

Query: 573  DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
            DV P   L  KK +L+   Y  C+  I  + +GKL+ +PGC+  QTLEA I  +L+++RE
Sbjct: 716  DVTPDNALKQKKEELVEIAYAKCDELIDLFTKGKLETQPGCNEEQTLEAKIGGLLSKVRE 775

Query: 633  DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
            + G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF
Sbjct: 776  EVGDICINELDNLNAPLIMATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 835

Query: 693  PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
             + +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LED
Sbjct: 836  RKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 895

Query: 753  LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR----------------- 795
            LS QYDN+VR +   IVQF YG DG+DP  MEG + +P+NF R                 
Sbjct: 896  LSCQYDNTVRTSSNGIVQFTYGGDGLDPLEMEG-NAQPVNFKRSWDHAINITFDNSAQGL 954

Query: 796  ----LLMKVKATCPPAGQRYLSPQQVSEIVEKQLAA----YGKESCSEAFLNSLRKFFEG 847
                ++ K      P  +R +    +  +V+    A      +      F  SLRK+ + 
Sbjct: 955  LPYAIINKTNDILAPFEERLIRYDNIGTLVKANDQAKDEFVDQLDSERNFYCSLRKYMQE 1014

Query: 848  QQDKL-----DKKIK-FVEDIGWDDKSQILEE--------VTHKTSGITEKQLEVFIQTC 893
            +   L     DK +K    + G + K   L+E           K   ITEK +E F++  
Sbjct: 1015 KASILASIRKDKGLKELSSEPGNEFKEMDLDEGESSEARFAVEKLCKITEKTVEKFLEIA 1074

Query: 894  FSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
             S+YR  RVE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K
Sbjct: 1075 MSKYRRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASK 1134

Query: 954  RISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
             ISTPII A L  ++++ AARVVKGRIEKTLL  VA  ++ V    L+ + + +D+ TI 
Sbjct: 1135 VISTPIINAVLVNDNDKRAARVVKGRIEKTLLSDVAYYVQDVYKDNLSFLEVKIDLSTID 1194

Query: 1014 DAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEI--FPPVDKSK------------ 1059
               L +  + +  ++ + PK+K++   ++++   K+ I  +P   K+K            
Sbjct: 1195 KLQLELTIEDIAVALTRAPKLKIQTTDVQIVSKDKITISVYPEGSKAKSISTSMKEPSEN 1254

Query: 1060 -IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
             + + + +L+  LP ++V G+  + R VI  ++  KR+           LLVEG GL+ V
Sbjct: 1255 DVFYRMQTLRRALPQIVVNGLPDIARAVINIRDDGKRE-----------LLVEGYGLREV 1303

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            M  +G+ G KT +NH+ EV   LGIEAAR  II EI+ TM  HGMS+D RH+ LL D+MT
Sbjct: 1304 MCTDGVIGSKTTTNHVLEVFSVLGIEAARSSIIGEIDYTMSNHGMSVDPRHIQLLGDVMT 1363

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
            ++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSECII+G  M +
Sbjct: 1364 YKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSI 1423

Query: 1239 GTGILKIRQRDAVPP 1253
            GTG  KI +   + P
Sbjct: 1424 GTGAFKILKSTEIKP 1438


>gi|213410469|ref|XP_002176004.1| DNA-directed RNA polymerase III complex large subunit Rpc1
            [Schizosaccharomyces japonicus yFS275]
 gi|212004051|gb|EEB09711.1| DNA-directed RNA polymerase III complex large subunit Rpc1
            [Schizosaccharomyces japonicus yFS275]
          Length = 1406

 Score = 1145 bits (2961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1308 (46%), Positives = 830/1308 (63%), Gaps = 84/1308 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            +R P ++ LR+T + K +   C     K   CP C    G+VKKA   L IIH+R +   
Sbjct: 126  LRKPGIDNLRRTQICKRLNDACK----KVRVCPYCNKTQGVVKKA-GPLKIIHERFRFNR 180

Query: 61   SLQE--------FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
             +QE        F  A+    + +  ++ A   LNP+ VL LFK++T  DCE+L +    
Sbjct: 181  KMQEEGGEFRQSFDQALKAMPDLRPHLHKAHDDLNPLRVLNLFKQITPMDCELLGMDPEK 240

Query: 111  -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE L+   +  PP+ IRP+V  +G+ + E+DIT +L  I+ T++ ++  L +      
Sbjct: 241  GRPENLLWQYMPAPPVTIRPTVAQEGA-TTEDDITIKLTEIVWTSSLIRAALNKGTPINS 299

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  WE LQ+ VA YINS++ G+      ++P  GF QRLKGKQGRFRGNLSGKRV+++G
Sbjct: 300  LMEQWEFLQLSVALYINSELPGLRPPDMPSKPTRGFCQRLKGKQGRFRGNLSGKRVDFSG 359

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
            RTVISPDPNL+I +VA+P+R+A+ILTYPE+V+D NI+ LR  + NGPD +PGA  +   D
Sbjct: 360  RTVISPDPNLQIDQVAVPLRIAKILTYPEKVTDQNIDALRTRVTNGPDVHPGANYVVDRD 419

Query: 290  -GTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 348
             G  R L    R ++A EL  G  V+RHL+D DVVLFNRQPSLH++SIM H  ++ PWRT
Sbjct: 420  TGIKRFLRFGNRKRIAEELHVGDTVERHLQDNDVVLFNRQPSLHKLSIMAHLVKVRPWRT 479

Query: 349  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDF 408
            LRFNE VC PYNADFDGDEMN+HVPQTEEARTEAL LMG++NNL TP+NGE ++A+TQDF
Sbjct: 480  LRFNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMGIKNNLVTPRNGEPIIAATQDF 539

Query: 409  LTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
            +T+S+L++ KD F DR  F  +CC+M D    +D+P PAILKP  LWTGKQLF VL+RP+
Sbjct: 540  ITASYLLSLKDCFLDRKTFCNLCCFMVDASVHIDIPPPAILKPRCLWTGKQLFGVLMRPN 599

Query: 469  ANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGN 528
                V VNL    ++ +          +     MCPNDG++  +NSEL++G + K+ +G+
Sbjct: 600  HLSPVMVNLAANTRSIAKG--------KCSPPEMCPNDGYLLIQNSELLAGVVDKSIVGD 651

Query: 529  GNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLI 588
            G K+ L+ V+LRDYG    +  MNRLAKL AR++GN GFSIGI+DVQP + L   K  L+
Sbjct: 652  GKKNSLFYVILRDYGPIEAAATMNRLAKLCARYLGNRGFSIGINDVQPGQRLYHTKEALV 711

Query: 589  SENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSP 648
             + Y V +  I +Y +G L+ +PG +   TLE+ I+  L+++R+D G+ CM  L  RN+P
Sbjct: 712  EKAYSVSDDLIMQYAKGTLECQPGMNQEATLESKISSTLSKVRDDVGETCMKELGSRNAP 771

Query: 649  LIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANS 708
            LIM+ CGSKGS IN+SQMVACVGQQ + G+R P+GF DRSLPHF + +K P AKGFV+NS
Sbjct: 772  LIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHFRKNSKHPLAKGFVSNS 831

Query: 709  FYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCI 768
            FY+GL+ TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDL+  YD +VR++   I
Sbjct: 832  FYTGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLTSAYDGTVRSSNSSI 891

Query: 769  VQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAY 828
            VQF YGDDG+DP  +EG  G P+ F+R                L P ++ E  E  L++ 
Sbjct: 892  VQFTYGDDGLDPTYLEG-DGTPVAFERCWSHSSNITYNEDDSGLLPYKIIEETESILSSR 950

Query: 829  G-KESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSG------- 880
                +C+E F+ S+R F     ++L KK+  V         Q+  ++   +         
Sbjct: 951  KFTANCTENFIESVRTFV---IERLAKKLAQVR-----ANRQLAPKLERPSEDDFDDFEN 1002

Query: 881  -----------------ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQM 923
                             +++KQL  F+Q C+ +Y   +VE GTA+GA+GA SIGEPGTQM
Sbjct: 1003 DDFAPLAARKSVDNVLRVSKKQLYTFLQFCWEKYMKAKVEPGTAVGAVGAHSIGEPGTQM 1062

Query: 924  TLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKT 983
            TLKTFHFAGVA+   T GVPRIKEIIN AK ISTPII   L  + +  +ARVVKGRIEKT
Sbjct: 1063 TLKTFHFAGVAAQT-TLGVPRIKEIINAAKTISTPIIYGALVNDQDVRSARVVKGRIEKT 1121

Query: 984  LLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKV 1043
             L  V  S++ +       I + ++ +TI+   L +    +  +I   PK+K+  Q + V
Sbjct: 1122 YLKDVISSLEEIFGPTNTYISVHVNFDTIRKLQLDLTLADIASAIWTAPKLKIPMQQVTV 1181

Query: 1044 LDFR---KLEIFPPV---DKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKV 1097
             D     ++ + P     + S +++ L + K  LP V+V GI    R +I ++       
Sbjct: 1182 HDSANEIRVHVTPDTKDFENSSVYYRLQTYKRALPNVVVSGIPKTSRAIILQE------- 1234

Query: 1098 KENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINET 1157
               GEKK+  L+VEG GL+ VM  EGI G KT +NH+ E+   LGIEAAR  II EI+ T
Sbjct: 1235 ---GEKKQ--LVVEGYGLREVMNTEGIVGSKTFTNHVMEMNAVLGIEAARQSIIYEIDST 1289

Query: 1158 MKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVN 1217
            M+ HG+++D RH+MLL D+MT +GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+  
Sbjct: 1290 MRNHGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLSLASFEKTTDHLFDAAAR 1349

Query: 1218 GRDDRIEGVSECIIMGIPMPLGTGILKI-----RQRDAVPPMLKYGAP 1260
               D IEG+SECI++G   P+GT + ++        D  P  L +  P
Sbjct: 1350 FAKDSIEGISECIVLGKLAPIGTNVFQLIRTTEESHDQEPKKLLFDNP 1397


>gi|148669493|gb|EDL01440.1| mCG7865 [Mus musculus]
          Length = 1349

 Score = 1144 bits (2959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 624/1275 (48%), Positives = 830/1275 (65%), Gaps = 93/1275 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKSTCHYCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL--- 108
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L +   
Sbjct: 184  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 109  SERPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
            S +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  SGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGPD +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHMQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILK    W       
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKVC--WGQ----- 595

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
                       YV +   E                                  L+ G + 
Sbjct: 596  -----------YVTIQNSE----------------------------------LMCGSMD 610

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 611  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 670

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 671  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 730

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 731  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 790

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 791  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 850

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS   ++   E
Sbjct: 851  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVYPCQTEPALSKNDLTLTAE 909

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++ F +G  +K+ K     +  G +D       V ++   IT
Sbjct: 910  AIMKKNEFLCCQDSFLQEIKTFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 966

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 967  PTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1026

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1027 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1086

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS ++
Sbjct: 1087 ILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1145

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+K++LLVEG  L+AVM  
Sbjct: 1146 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKFKLLVEGDNLRAVMAT 1197

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1198 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1257

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1258 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1317

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1318 LFKLLHKANRDPKPP 1332


>gi|320581578|gb|EFW95798.1| DNA-directed RNA polymerase III subunit, putative [Ogataea
            parapolymorpha DL-1]
          Length = 1469

 Score = 1144 bits (2959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1346 (45%), Positives = 843/1346 (62%), Gaps = 117/1346 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAV-----LGIIHD- 54
            +R P ++ LR+  ++K ++ +    A K  +C RCG +NG+VKKA A      L IIHD 
Sbjct: 127  LRRPGLDNLRRMKILKKLLDQ----AKKQRRCLRCGALNGVVKKAAAGAGPAALKIIHDT 182

Query: 55   -----RSKVTESLQ---EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
                 +    E LQ   +F        + +         LNP+ VL LFK++  +DCE+L
Sbjct: 183  FRWVGKKGADEKLQWDEDFEDLFDENPDLEKFFKRCFDDLNPLKVLNLFKQVDTSDCELL 242

Query: 107  YLSE----RPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQEL 161
             +      RPE  +   +  PP+ IRPSV+M D + SNE+D+T +L  I+ T++ ++  +
Sbjct: 243  GIDPSKGGRPEMYLWRYLPAPPVCIRPSVVMTDTNTSNEDDLTVKLTEIVWTSSMIRAGI 302

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVP-----FSMQVARPLSGFVQRLKGKQGRF 216
             +  S    +  W+ LQ+ VA YINSD           S + A+P+ G  QRLKGKQGRF
Sbjct: 303  EKGISINSLMEQWDYLQLAVAMYINSDSASPSALSGGTSTKSAKPIRGLCQRLKGKQGRF 362

Query: 217  RGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGP 276
            RGNLSGKRV+++GRTVISPDPNL+I EVA+P R+A++LTYPERV+ +N  KL+  I NGP
Sbjct: 363  RGNLSGKRVDFSGRTVISPDPNLRIDEVAVPDRVAKVLTYPERVTRYNKAKLQALIINGP 422

Query: 277  DKYPGARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRM 334
            D +PGA  +  ++ D    + YG  RN+LA +L  G IV+RH+EDGD+VLFNRQPSLHR+
Sbjct: 423  DVHPGANYLVKKHEDVKRNLRYGD-RNKLAKQLAVGDIVERHIEDGDIVLFNRQPSLHRL 481

Query: 335  SIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCT 394
            SIM H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL T
Sbjct: 482  SIMSHFAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNLLT 541

Query: 395  PKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVEL 454
            PK+GE ++A+TQDF+T S+LI+ KD+FYDRA F+ M   M DG   VD+P PAI KP  +
Sbjct: 542  PKSGEPIIAATQDFITGSYLISNKDSFYDRATFTQMLAMMSDGALHVDIPPPAIFKPAFM 601

Query: 455  WTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNS 514
            WTGKQLFS+LIRP+   +V +NL  K KT+         +       M PNDGFV  RNS
Sbjct: 602  WTGKQLFSLLIRPNRQSKVVINLDAKNKTFVPPPPGMPSE-------MSPNDGFVVIRNS 654

Query: 515  ELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDV 574
            +++SG + K+TLG+G K  ++  +LRDYGA   +  MNR+AKL AR++GN GFSIGI+DV
Sbjct: 655  QILSGVMDKSTLGDGKKHSVFYTILRDYGADEAANAMNRMAKLCARYLGNRGFSIGINDV 714

Query: 575  QPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDA 634
             P + L ++K +L+   Y  C+  I  +  GKL+ +PGC+  QTLEA I  +L+++RE+ 
Sbjct: 715  TPGENLKNRKEQLVEIAYRKCDELITLFKTGKLETQPGCNEEQTLEAKIGGLLSKVREEV 774

Query: 635  GKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPR 694
            G+ C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF +
Sbjct: 775  GEVCIKELDKSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFLK 834

Query: 695  KAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLS 754
             +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKTA+TGY SRRL+K++EDLS
Sbjct: 835  NSKSPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYTSRRLMKSMEDLS 894

Query: 755  IQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSP 814
              YD +VRN+   IVQF YG DG+DP +MEG +  P+NF+R             ++ L P
Sbjct: 895  AGYDETVRNSSNGIVQFNYGGDGLDPLDMEGDA-RPVNFNRTWDHAFHVTLDHHEQGLYP 953

Query: 815  QQVSEIVE-------------------------KQLAAYGKESCSEAFLNSLRKFFEG-- 847
             +   I +                         +++    +      F +S+R + E   
Sbjct: 954  YEALRIADSVLQPLKDRLVRVDNLGRPLAGRDAEKIEYVDRHDAERDFYSSIRAYIETKC 1013

Query: 848  -------QQDKLDKKIKFVEDIGWDDKSQI----LEEVTHKTSGITEKQLEVFIQTCFSR 896
                   +Q  LD  ++  E         +     E V  + + ++E  +  F++ C  +
Sbjct: 1014 RSIARLREQRGLDPLLEAPEASEGPGTRPVSDPERERVVTQLAKVSESMIREFLRLCLHK 1073

Query: 897  YRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRIS 956
            Y   +VE GTA+GAIGA SIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K IS
Sbjct: 1074 YLKAKVEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVIS 1133

Query: 957  TPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAH 1016
            TPII A L  +++E AARVVKGRIEKT+L  VA  I+ V     A + + +D+ TI+   
Sbjct: 1134 TPIINAVLVNDEDERAARVVKGRIEKTILEDVAFFIEDVYKENQAYLQVKIDLHTIERLQ 1193

Query: 1017 LCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP---------------------- 1054
            L +  D +  +IV  PK+K+ +  + ++   ++++F                        
Sbjct: 1194 LELTIDQIASAIVDAPKLKISRGDVAIVGKNRIQVFVSETGNETGKTARTASSRESSVVK 1253

Query: 1055 -------VDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYR 1107
                   ++++ + F +  L+ VL  V+VKG+  + R VI         VK++G+K+   
Sbjct: 1254 DADERERLERTSLFFRMQQLRRVLTKVVVKGLPDISRAVI--------NVKDDGKKE--- 1302

Query: 1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
            LLVEG GL+AVM  +G+   +TK+NH+ E+   LGIEAAR  II EI+ TM +HGM++D 
Sbjct: 1303 LLVEGYGLKAVMATDGVVAHRTKTNHVLEIFDVLGIEAARASIISEIDYTMGSHGMAVDP 1362

Query: 1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
            RH+ LL D+MT++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVS
Sbjct: 1363 RHIQLLGDVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKKDLVEGVS 1422

Query: 1228 ECIIMGIPMPLGTGILKIRQRDAVPP 1253
            E II+G  M +GTG  K+  +  V P
Sbjct: 1423 ERIILGQTMSIGTGAFKLAAQSKVDP 1448


>gi|365984467|ref|XP_003669066.1| hypothetical protein NDAI_0C01620 [Naumovozyma dairenensis CBS 421]
 gi|343767834|emb|CCD23823.1| hypothetical protein NDAI_0C01620 [Naumovozyma dairenensis CBS 421]
          Length = 1460

 Score = 1144 bits (2958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/1327 (46%), Positives = 842/1327 (63%), Gaps = 105/1327 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAV-----LGIIHDR 55
            +R P ++ LR+  ++K ++ +C     K  +C +CG +NG+VKKA A      L IIHD 
Sbjct: 127  LRRPGVDNLRRMGILKKVLDQCK----KQRRCLQCGALNGVVKKAAAGAGSASLKIIHDN 182

Query: 56   SKVT---------ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +           + + ++   ++H  E +  V   +  LNP+  L LFK++   DCE+L
Sbjct: 183  FRWVGKKSAPEKDKWVGDWKEVLSHHPELERFVKRCSDDLNPLKTLNLFKQIKPEDCELL 242

Query: 107  YL-----SERPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
             +     S RPE  I   +  PP+ IRPSV+M D   SNE+D+T +L  I+ T++ ++  
Sbjct: 243  GVNSTVKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAG 302

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSD------VRGVPFSMQVARPLSGFVQRLKGKQG 214
            L +  S    +  W+ LQ+ VA YINSD      + G        +P+ GF QRLKGKQG
Sbjct: 303  LEKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGASSGGGKVKPIRGFCQRLKGKQG 362

Query: 215  RFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQN 274
            RFRGNLSGKRV+++GRTVISPDPNL I EVA+P R+A++LT+PE+V+ +N +KL+Q I N
Sbjct: 363  RFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNRQKLQQLIIN 422

Query: 275  GPDKYPGARMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
            GP+ +PGA  +   +  AR  + YG  R +LA  L+ G +V+RHLEDGDVVLFNRQPSLH
Sbjct: 423  GPNVHPGANYLLKNNEDARRNLRYGD-RVKLAKNLQFGDVVERHLEDGDVVLFNRQPSLH 481

Query: 333  RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
            R+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL
Sbjct: 482  RLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 541

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
             TPK+GE ++A+TQDF+T S+LI+ KD+F+DRA  + +   M D   + D+P PAI+KP 
Sbjct: 542  LTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLTQLLSMMCDANLQFDIPPPAIMKPH 601

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFR 512
             LWTGKQLFS+LI+P+ +  V +NL  K K Y     +   +E      M  NDG+V  R
Sbjct: 602  YLWTGKQLFSLLIKPNKDSPVVINLDAKNKVYIPPKTKAYPNE------MSRNDGYVIIR 655

Query: 513  NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
             S+++SG + K+ LG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI 
Sbjct: 656  GSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAATAMNRMAKLCARFLGNRGFSIGIS 715

Query: 573  DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
            DV P  +L  KK +L+   Y  C+  I ++N+GKL+ +PGC+  QTLEA I  +L+++RE
Sbjct: 716  DVTPADDLKQKKEELVEIAYAKCDELIDQFNKGKLETQPGCNEEQTLEAKIGGLLSKVRE 775

Query: 633  DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
            + G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF
Sbjct: 776  EVGDVCINELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 835

Query: 693  PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
             + +K P +KGFV NSF+SGL+  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LED
Sbjct: 836  QKNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 895

Query: 753  LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYL 812
            LS QYDN+VR +   IVQF YG DG+DP  MEG + +P+NF+R             Q  L
Sbjct: 896  LSCQYDNTVRTSSNGIVQFTYGGDGLDPMEMEG-NAKPVNFNRSWDHATNITFSPDQHGL 954

Query: 813  SPQQVSEI-------VEKQLAAY--------GKESCSEAFLNSL---RKFFEGQQDKLDK 854
             P Q+ E        +E +L  Y         ++S    +++     R F++  +D +D+
Sbjct: 955  LPYQIMETTNAILKPLEDRLIRYDNLGEIVPNEDSTKAEYVDQFDAERDFYKSLRDYMDE 1014

Query: 855  KIKFVEDI------------------GWDDKSQILEEVTHKTS---GITEKQLEVFIQTC 893
            K K +  +                    +   Q+ E + +       ITE  ++ F++  
Sbjct: 1015 KAKVLGSVRKSRGMLPMVDEPAEELKKMNPDEQVPETIRYSVDQLYKITEDLVKKFLEIA 1074

Query: 894  FSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
              +YR  RVE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K
Sbjct: 1075 LYKYRKARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASK 1134

Query: 954  RISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
             ISTPII A L   ++E AARVVKGRIEKTLL  VA  I+ V    L+ I + +D+ TI+
Sbjct: 1135 VISTPIINAVLVNENDERAARVVKGRIEKTLLSDVAYYIQDVYKDNLSFIQVRIDLNTIE 1194

Query: 1014 DAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEI--FPPVDKSK------------ 1059
               L +  + +  ++ + PK+K+    + ++   K+ I  FP   K+K            
Sbjct: 1195 KLQLELTIEDIAVALTRAPKLKILTSDVNIIGKDKIAINVFPEGYKAKSISTAAKEPTEN 1254

Query: 1060 -IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
             + + +  L+  LP ++VKG+  + R VI  ++  KR+           LLVEG GL+ V
Sbjct: 1255 AVFYRMQHLRRALPSIVVKGLPEIARAVINIRDDGKRE-----------LLVEGYGLRDV 1303

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            M  +G+ G KT +NHI EV   LGIEAAR  I+ EI+ TM  HGMS+D RH+ LL D+MT
Sbjct: 1304 MCTDGVIGMKTTTNHILEVNTVLGIEAARSSIVGEIDYTMSNHGMSVDPRHIQLLGDVMT 1363

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
            ++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSECII+G  M +
Sbjct: 1364 YKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSI 1423

Query: 1239 GTGILKI 1245
            GTG  K+
Sbjct: 1424 GTGSFKV 1430


>gi|150951372|ref|XP_001387687.2| DNA-directed RNA polymerase III subunit C1 (RPO31) [Scheffersomyces
            stipitis CBS 6054]
 gi|149388539|gb|EAZ63664.2| DNA-directed RNA polymerase III subunit C1 (RPO31) [Scheffersomyces
            stipitis CBS 6054]
          Length = 1448

 Score = 1142 bits (2954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/1321 (46%), Positives = 843/1321 (63%), Gaps = 103/1321 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHDR 55
            +R P ++ LR+  ++K ++ +C     K  +C +C ++NG+VKKA      A L I+HD 
Sbjct: 127  LRRPNIDNLRRMKILKKVLDQCK----KQRRCLKCNHVNGVVKKAASGAGPAALKIVHDT 182

Query: 56   -----SKVTESLQ----EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
                  K T   +    EF   ++   E +         LNP+  L LFK++T +DCE+ 
Sbjct: 183  FRWIGKKPTPEKEYWDKEFDQVLSRNPELEKFAKRVYDDLNPLKTLNLFKQITPSDCELF 242

Query: 107  YLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
             L      RPE  I   +  PP+ IRPSV+MD SQSNE+D+T +L  I+ T++ ++  + 
Sbjct: 243  GLDPARGGRPEMYIWRYLPAPPVCIRPSVMMD-SQSNEDDLTVKLTEIVWTSSLIKAGIE 301

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPF-------SMQVARPLSGFVQRLKGKQGR 215
            +  S    +  W+ LQ+ VA YINSD               + ++P+ GF QRLKGKQGR
Sbjct: 302  KGISINNLMEQWDYLQLSVAMYINSDSANPALLPSSGGGGSKSSKPIRGFCQRLKGKQGR 361

Query: 216  FRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNG 275
            FRGNLSGKRV+++GRTVISPDPNLKI EVA+P  +A++LTYPER + +N +KL++ + NG
Sbjct: 362  FRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPELVAKVLTYPERCTRYNRKKLQRLVVNG 421

Query: 276  PDKYPGARMIRYPDGTA-RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRM 334
            PD +PGA  +   +  A R L    R +LA  L+ G +V+RH+EDGDVVLFNRQPSLHR+
Sbjct: 422  PDIHPGANYVMKQNEQAKRNLRFGDRVKLAKNLQIGDLVERHIEDGDVVLFNRQPSLHRL 481

Query: 335  SIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCT 394
            SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL T
Sbjct: 482  SILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLT 541

Query: 395  PKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVEL 454
            PK+GE ++A+TQDF+T S+LI+ KD+F+DRA+   +   M D   + D+P P+I KPV L
Sbjct: 542  PKSGEPIIAATQDFITGSYLISHKDSFFDRASLVQLLSMMSDADVQFDIPPPSIFKPVML 601

Query: 455  WTGKQLFSVLIRPHANMRVYVNLTVKEKTY--SNKLIRTEGDEEIRIETMCPNDGFVYFR 512
            WTGKQ+FS+LI+P+    V +NL  K KT+    K + +E         M PNDGFV  R
Sbjct: 602  WTGKQVFSLLIKPNKKSNVVINLDAKCKTFIPPEKGLPSE---------MSPNDGFVIIR 652

Query: 513  NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
             S++++G + K+ LG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI+
Sbjct: 653  GSQVLAGVMDKSLLGDGKKHSVFYTILRDYGPEEAATAMNRMAKLCARFLGNRGFSIGIN 712

Query: 573  DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
            DV P  +L  KK  ++ + Y  C+  I  Y+ GKL+ +PGC+  QTLEA I+ +L+++RE
Sbjct: 713  DVTPGFDLRRKKELMVEQAYLKCDELIDLYHRGKLETQPGCNEEQTLEAKISGLLSKVRE 772

Query: 633  DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
            + G+ C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF
Sbjct: 773  EVGEVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 832

Query: 693  PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
             + +K P +KGFV NSFYSGL+  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LED
Sbjct: 833  TKNSKTPQSKGFVRNSFYSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 892

Query: 753  LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR---------LLMKVKAT 803
            LS QYD++VRN+   IVQF YG DG+DP +MEG +  P+NF R           +K K+ 
Sbjct: 893  LSSQYDSTVRNSSNGIVQFTYGGDGLDPYDMEGDA-RPVNFKRQWDHAFNITFNIKDKSL 951

Query: 804  CP------------PAGQRYLSPQQVSEIVEKQ----LAAYGKESCSEAFLNSLRKFFEG 847
             P            P   R +    V +I+ ++    +    +     A+  SLR F   
Sbjct: 952  LPYEIIDLVNSILEPLEDRLIRYDNVGKILPEEDFDKIEYIDQNDAERAYYQSLRDFVTD 1011

Query: 848  QQDKLDK-------KIKFV----EDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSR 896
            + ++L +       +  F     EDI +D     +  V      I+ K +E F++    +
Sbjct: 1012 KAEQLAQIREHRGLRTFFTRPDSEDILFDSDESAVNAVDQLLK-ISSKTIEKFLEQSLYK 1070

Query: 897  YRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRIS 956
            Y   +VE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K IS
Sbjct: 1071 YSKAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKTIS 1130

Query: 957  TPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAH 1016
            TPII + L  +D+E AARVVKGR+EKTLL  VA  I+ V  + +A + I +DM TI+   
Sbjct: 1131 TPIINSVLVNDDDEIAARVVKGRVEKTLLKDVAFFIEDVYKNEMAYLSIKIDMSTIEKLQ 1190

Query: 1017 LCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK------------IHFEL 1064
            L +  D +  +I   PK+K+    + V    ++ +   + +SK            + F +
Sbjct: 1191 LELTIDDIVTAIHNAPKLKISPGDVSVSGKDRVNVLATLRESKADALKNGSNANELFFRM 1250

Query: 1065 YSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGI 1124
              L+  LP + +KG+  + R VI         ++++G+K+   LLVEG GL+ VM  +GI
Sbjct: 1251 QQLRRSLPNICIKGLPNIMRAVI--------NIRDDGKKE---LLVEGYGLKDVMSTDGI 1299

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
             G KT +NH+ EV + LGIEAAR  II EI+ TM  HGMS+D RH+ LL D+MT++GEVL
Sbjct: 1300 VGTKTTTNHVLEVFEVLGIEAARASIIKEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVL 1359

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
            GITRFG+ KM  SVL LASFEKT DHLF+A+   + D+IEGVSECII+G  M +GTG  K
Sbjct: 1360 GITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKSDKIEGVSECIILGQSMSIGTGSFK 1419

Query: 1245 I 1245
            +
Sbjct: 1420 L 1420


>gi|254584114|ref|XP_002497625.1| ZYRO0F09856p [Zygosaccharomyces rouxii]
 gi|238940518|emb|CAR28692.1| ZYRO0F09856p [Zygosaccharomyces rouxii]
          Length = 1458

 Score = 1141 bits (2951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/1327 (46%), Positives = 845/1327 (63%), Gaps = 107/1327 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA-----VLGIIHD- 54
            +R P ++ LR+  ++K ++ +C     K  +C +CG +NG+VKKA A      L IIHD 
Sbjct: 127  LRRPGVDNLRRMGILKKVLDQCK----KQRRCLQCGALNGVVKKAAAGGGSASLKIIHDT 182

Query: 55   -----RSKVTES---LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
                 +  V E    + ++ S + H+ E +  V      LNP+  L LFK++   DCE+L
Sbjct: 183  FRWAGKKSVPEKEKWIGDWDSVLAHSPELERYVKRCMDDLNPLKTLNLFKQVKPEDCELL 242

Query: 107  YL-----SERPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
             +     S RPE  I   +  PP+ IRPSV+M D   SNE+D+T +L  ++ T++ ++  
Sbjct: 243  GIDSTIKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEVVWTSSLIKAG 302

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSD-VRGVPFSMQVA---RPLSGFVQRLKGKQGRF 216
            L +  S    +  W+ LQ+ VA YINSD V     S       +P+ GF QRLKGKQGRF
Sbjct: 303  LEKGISINNMMEHWDYLQLAVAMYINSDSVNPAILSGGTGGKVKPIRGFCQRLKGKQGRF 362

Query: 217  RGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGP 276
            RGNLSGKRV+++GRTVISPDPNL + EVA+P R+A++LTYPERV+ +N  KL+Q + NGP
Sbjct: 363  RGNLSGKRVDFSGRTVISPDPNLSVDEVAVPDRVAKVLTYPERVTRYNKGKLQQLVVNGP 422

Query: 277  DKYPGARMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRM 334
            ++YPGA  +   D  AR  + +G  R +LA  L+ G +V+RHLEDGDVVLFNRQPSLHR+
Sbjct: 423  NEYPGANYLLKKDEDARRNLRFGD-RVKLAKNLRIGDLVERHLEDGDVVLFNRQPSLHRL 481

Query: 335  SIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCT 394
            SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQ+EEAR EA+ LMGV++NL T
Sbjct: 482  SILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQSEEARAEAINLMGVKSNLLT 541

Query: 395  PKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVEL 454
            PK+GE ++A+TQDF+T S+LI+ KD+F+D+   + +   M DG  + D+P P I KP  L
Sbjct: 542  PKSGEPIIAATQDFITGSYLISHKDSFFDKYDMTQLLSMMSDGALQFDIPPPTIWKPCYL 601

Query: 455  WTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNS 514
            WTGKQ+FS+LIRP+    V +NL  K K Y     ++  +E      M  NDGFV  R S
Sbjct: 602  WTGKQIFSLLIRPNKKSPVVLNLDAKNKVYIPPKSKSLPNE------MSQNDGFVLIRGS 655

Query: 515  ELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDV 574
            +++SG + K+ LG+G K  ++  +LRDYG+   +  MNR+AKL AR++GN GFSIGI DV
Sbjct: 656  QILSGVMDKSVLGDGKKHSVFYTILRDYGSQEAAEAMNRMAKLCARYVGNRGFSIGISDV 715

Query: 575  QPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDA 634
             P +EL +KK +++   Y  C+  I  +++GKL+ +PGC+  QTLEA I  +L+++RE+ 
Sbjct: 716  TPAEELKEKKEEMVESAYAKCDELIDLFSKGKLETQPGCNEEQTLEAKIGGLLSKVREEV 775

Query: 635  GKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPR 694
            G+ C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHFP+
Sbjct: 776  GEVCINELDNMNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGSRVPDGFQDRSLPHFPK 835

Query: 695  KAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLS 754
             +K P +KGFV NSF+SGL+  EF +H + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS
Sbjct: 836  NSKTPQSKGFVRNSFFSGLTPPEFLYHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLS 895

Query: 755  IQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSP 814
              YDN+VR +   IVQF YG DG+DP  MEG + +P+NF+R              R L P
Sbjct: 896  CLYDNTVRTSSNGIVQFTYGGDGLDPLEMEGNA-QPVNFNRTWDHATNVTFNNMDRGLLP 954

Query: 815  QQVSEI-------VEKQLAAY---GKESCSE---------------AFLNSLRKF----- 844
             Q+ ++       +E +L  Y   G E   E                F +SLR F     
Sbjct: 955  YQIMQVTEEILQPLENRLVRYDNLGNEITKENRDRIEYIDQNDAERGFYHSLRDFIWAKA 1014

Query: 845  -----FEGQQDK---LDKKIKFVEDIGWDDKSQILEEVTHKTSG---ITEKQLEVFIQTC 893
                 F G +D    +D+    ++ +  D+   + E++ H       IT+K +  F++  
Sbjct: 1015 QLLAKFRGSKDMKELMDEPALELQSVDLDE--NVPEDIRHSVDQVYRITDKMVREFLRVA 1072

Query: 894  FSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
              +YR  +VE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K
Sbjct: 1073 ILKYRRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASK 1132

Query: 954  RISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
             ISTPII A L    +E AARVVKGRIEKTLL  VA  I+ V    L+ + + +D+ TI 
Sbjct: 1133 VISTPIINAVLVNESDERAARVVKGRIEKTLLSDVAFYIQDVYRDNLSYLQVRVDLSTID 1192

Query: 1014 DAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEI--FPPVDKSK------------ 1059
               L +  + +  ++ + PK+K++   + ++   K+ I  FP   K+K            
Sbjct: 1193 KLQLELTIEDIAVAMTRAPKLKIQASDVHIVGKDKIAINVFPDGAKAKSISTLAKEPSEN 1252

Query: 1060 -IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
             + + +  L+  LP ++VKG+  + R VI  ++  KR+           LLVEG GL+ V
Sbjct: 1253 EVFYRMQQLRRALPGIVVKGLSDISRAVINIRDDGKRE-----------LLVEGYGLRDV 1301

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            M  +G+ G KT +NHI EV   LGIEAAR  I+ EI+ TM  HGMS+D RH+ LL D+MT
Sbjct: 1302 MSTDGVVGHKTVTNHILEVYSVLGIEAARASIVGEIDYTMSNHGMSVDPRHIQLLGDVMT 1361

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
            ++GE+LGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSECII+G  M +
Sbjct: 1362 YKGEILGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMAI 1421

Query: 1239 GTGILKI 1245
            GTG  K+
Sbjct: 1422 GTGAFKV 1428


>gi|392572905|gb|EIW66048.1| hypothetical protein TREMEDRAFT_72470 [Tremella mesenterica DSM 1558]
          Length = 1457

 Score = 1140 bits (2949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1312 (46%), Positives = 836/1312 (63%), Gaps = 94/1312 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD--RSKV 58
             R+  +++ ++T   KS++    T+  K   C  CG  NG VKK V  + I+H+  R+K 
Sbjct: 139  FRHANIDSRQRTSANKSVL----TLCKKQNICAHCGAANGPVKK-VGAMKIVHEPFRAKK 193

Query: 59   TESLQ-----EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE--- 110
              +++     +F +AI      K  +      LNPV VL LF+R+T  DCE+L L     
Sbjct: 194  MGAMKADFESKFTTAIADDITLKGNLGSVVEDLNPVKVLALFQRITAEDCELLSLHPEVG 253

Query: 111  RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
            RPE  I   ++VPP AIRPSV  + S +NE+D+T +L  I   N  LQ  +       + 
Sbjct: 254  RPEDYIWRYVSVPPPAIRPSVASE-SGNNEDDLTVKLAEIAHYNKLLQLTMESGRGIEQI 312

Query: 171  LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
            +A WE L   VA YINS   G+  S+  ++P  GFVQRLKGKQGRFRGNLSGKRV+++GR
Sbjct: 313  MANWENLGQVVALYINSQTPGL--SVPGSKPNRGFVQRLKGKQGRFRGNLSGKRVDFSGR 370

Query: 231  TVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI--RYP 288
            TVI PDPNL+I EVA+P ++A  L+YPERV+++NI  +RQ I +G   +PGA ++  + P
Sbjct: 371  TVIGPDPNLRIDEVAVPEKVAVKLSYPERVNNYNIVAMRQAIIHGAKLHPGANILERKAP 430

Query: 289  DGTA------RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRAR 342
            DGT        +   + R  +A ELK G +V RH+ DGD+ LFNRQPSLH++SIMCHR R
Sbjct: 431  DGTTVRTALHMIKDVERRTLVARELKIGDVVHRHVRDGDIALFNRQPSLHKLSIMCHRVR 490

Query: 343  IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILV 402
            + PWRT R NE VCNPYNADFDGDEMN+H+PQTEEARTEAL LM V+ NL TP+NGE ++
Sbjct: 491  VRPWRTFRLNECVCNPYNADFDGDEMNLHIPQTEEARTEALELMSVKKNLVTPRNGEPII 550

Query: 403  ASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFS 462
            A+ QDF+T SFL++R+D F+ R  F+ +C +  D    +D+P P I KP  LWTGKQ+F+
Sbjct: 551  AAIQDFITGSFLLSRRDRFFSRQQFTQICSFFCDADLDIDIPPPTIWKPQRLWTGKQIFN 610

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            VL++P+   R+ VNL  K +T  +   +     +     M PNDG++   NSE++ G   
Sbjct: 611  VLMKPNRRSRIKVNLEAKCRTMKDPDPKDHFPPD-----MSPNDGYLVIVNSEIMCGVFD 665

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K T+G+G K  ++ V+LRDYG    +  MNRLAKL+ARW+ N GFS+GI+DV P  +L  
Sbjct: 666  KNTVGDGKKKSVFGVILRDYGPDEAAAGMNRLAKLAARWLANQGFSLGINDVIPGPKLHL 725

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K   + E Y+ C+  I++  +G L+  PGCD   TLE  I+  L+++R + G+ CM  L
Sbjct: 726  SKDGKVEEAYKYCDDLIEKAKKGLLENAPGCDQDTTLEQQISGTLSKVRGEVGELCMQDL 785

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               N+PLIM+ CGSKGS IN++QMVACVGQQ + G R PNGF DRSLPHF +K++ P +K
Sbjct: 786  SRHNAPLIMATCGSKGSVINVAQMVACVGQQIISGNRIPNGFQDRSLPHFHKKSRNPPSK 845

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFV NSFY+GLS TEF FH + GREGLVDTAVKTA+TGYM+RRL+KA+EDLS  YD SVR
Sbjct: 846  GFVRNSFYTGLSPTEFLFHAISGREGLVDTAVKTAETGYMARRLMKAMEDLSTHYDLSVR 905

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQV----- 817
            N+ G +VQF YGDD +DPA +EG +  P+++ R            G R L P +V     
Sbjct: 906  NSEGGVVQFQYGDDMLDPACLEGDA-TPVDYGRTWTHASRIASRGG-RALLPYEVLAIAQ 963

Query: 818  ------SEIVEKQLA----------------AYGKESCSEAFLNSLRKFFEGQ------- 848
                  +E+ E Q                    G ESC + F  +   F           
Sbjct: 964  RIFPESAEVTEPQTKRNRRGRSTKKIVSTEMLTGWESCHDKFRENTFAFVRDNIVKVMAD 1023

Query: 849  ---------QDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRV 899
                      D L+   ++ + +  DD +  +++V   T+ +++ Q+  F++ C  RY  
Sbjct: 1024 QRLSRGLPPADTLEDAEEYGDLLVPDDFA--IKQVLDNTNKVSQDQIRTFLEICRIRYLR 1081

Query: 900  KRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPI 959
             ++E G+ +GA+GAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K ISTPI
Sbjct: 1082 SKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKTISTPI 1141

Query: 960  ITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCI 1019
            ITAEL    +E+AAR+VKGR+EKT+LG +A  I+   ++ +  I++ +D+E +Q   L I
Sbjct: 1142 ITAELVNATSEHAARIVKGRVEKTVLGDIASVIEESWSNAMGYIMVHIDLEAVQRLQLEI 1201

Query: 1020 NADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPV----DKSKIHFE-LYSLKNVLPMV 1074
              D +KES++ + K+KL Q         +++I+P V    DK++  +E L +LK  LP V
Sbjct: 1202 TLDSIKESLIGS-KLKLTQSSFSFHKGSRIQIYPEVSGKGDKTEGLYERLKALKRALPDV 1260

Query: 1075 IVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHI 1134
             +KG+   +R VI + EK +            RLLV G GL  VMG +G+DG +TK+NH+
Sbjct: 1261 QIKGLPQADRGVITKDEKNQ---------NINRLLVTGYGLAEVMGTDGVDGRRTKTNHV 1311

Query: 1135 FEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKM 1194
             E  + LGIEAAR  I +EI  TM++HGMSID RH+MLL D+MT++GEVLGITRFG+QKM
Sbjct: 1312 METAEVLGIEAARTTIYNEIQHTMQSHGMSIDPRHVMLLGDVMTYKGEVLGITRFGVQKM 1371

Query: 1195 DKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP-LGTGILKI 1245
              SVLMLASFEKT DHLF+AS+  + D I+GVSECIIMG P P  GT +  I
Sbjct: 1372 KDSVLMLASFEKTTDHLFDASLFSKKDEIQGVSECIIMGTPAPSCGTSMASI 1423


>gi|58268624|ref|XP_571468.1| DNA-directed RNA polymerase iii largest subunit [Cryptococcus
            neoformans var. neoformans JEC21]
 gi|57227703|gb|AAW44161.1| DNA-directed RNA polymerase iii largest subunit, putative
            [Cryptococcus neoformans var. neoformans JEC21]
          Length = 1466

 Score = 1139 bits (2947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1321 (47%), Positives = 823/1321 (62%), Gaps = 104/1321 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVT- 59
             R P +E+L++    K+++  C     K   C  CG  NG+VKK+   L I H+  +   
Sbjct: 139  FRRPNLESLQRQSAAKAVLAACK----KQNICTYCGAPNGIVKKS-GPLRISHEPYRAAK 193

Query: 60   ------ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE--- 110
                  E +  F +A+   +     +  A   LNP+ VL LF+R+T  DCE+L L     
Sbjct: 194  MASMKDEWMATFKNAVAENQAVATHLAKAVDDLNPLKVLNLFERITAEDCELLSLHPEVG 253

Query: 111  RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
            RPE  I   I+VPP  IRPSV  +   +NE+D+T +L  I+  N +L   +         
Sbjct: 254  RPEDYIWQYISVPPPCIRPSVASEAG-NNEDDLTAKLAEIVNYNNTLALMMDLGRGIEMI 312

Query: 171  LAGWETLQVEVAQYINSDVRGVPFSMQV--ARPLSGFVQRLKGKQGRFRGNLSGKRVEYT 228
             + WE L   VA YINS   G    MQ   ++P+ GFVQRLKGKQGRFRGNLSGKRV+++
Sbjct: 313  SSNWEVLGQAVALYINSQAPG----MQTIGSKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 368

Query: 229  GRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI--R 286
            GRTVI PDPNL+I EVA+P ++A  L+YPERV+D+N++ +RQ I NG   +PGA ++  +
Sbjct: 369  GRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQLMRQAIINGSKLHPGANVLERK 428

Query: 287  YPDG-TARVLYG-----KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
            + +G T R+        + R + A EL+ G IV RH+ DGD+VLFNRQPSLH++SIMCHR
Sbjct: 429  HENGSTVRISLNVMKDLEARKRYARELQIGDIVHRHVRDGDIVLFNRQPSLHKLSIMCHR 488

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
             R+ PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEAL LM V+ NL TP+NGE 
Sbjct: 489  VRVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMSVKKNLVTPRNGEP 548

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A+ QDF+T+++L++R+D FYDR  F+ +  Y+ D   ++++P P I KPV LWTGKQ+
Sbjct: 549  IIAAIQDFITAAYLLSRRDRFYDRQQFTQIVSYLDDANLKIEMPPPTIWKPVRLWTGKQI 608

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            F++L+RP+   +V VNL  K +T  +        E+     M PNDG++  +NSE++ G 
Sbjct: 609  FNLLMRPNKESKVLVNLEAKCRTLVDP-----AKEDRFPPDMSPNDGYLVIQNSEIMCGV 663

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
              K T+G+G K+ ++ V+LRDYG    +  MNRLAK++ARW+ N GFS+GI+DV P   L
Sbjct: 664  FDKNTVGDGKKNSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLGINDVIPGPIL 723

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
               K   + + Y+ C+V I    +GKL+  PGCD   TLE+ I+  L+ +RE  GK CM 
Sbjct: 724  HASKDARVEKAYDECDVFIDLAKKGKLENAPGCDQEATLESKISKTLSDVREAVGKICMQ 783

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
             L   N+PLIM+ CGSKGS IN++QMVACVGQQ +GG R  NGF DRSLPHF +K+K P 
Sbjct: 784  ELSRHNAPLIMATCGSKGSVINVAQMVACVGQQIIGGSRVRNGFQDRSLPHFRKKSKNPP 843

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSF+SGL+  EF FH M GREGLVDTAVKTA+TGYM+RRL+KALEDL   YD S
Sbjct: 844  SKGFVRNSFFSGLTPPEFLFHAMSGREGLVDTAVKTAETGYMARRLMKALEDLCTHYDLS 903

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQ--RYLSPQQVS 818
            VRN+ G IVQF YGDD +DPA +EG +  P+ + R        C  AG   R L P +V 
Sbjct: 904  VRNSVGGIVQFQYGDDMLDPACLEGDA-TPVEYVRSWTH---ACRTAGNQGRALYPYEVR 959

Query: 819  EIVEK----------------------------------QLAAYGKESCSEAFLNSLRKF 844
             I  +                                         E C   F  +  KF
Sbjct: 960  RIAARIYPESFVPPNFSPSLPKTKSRRRKEPTPPPPVVAPTLPKEWEGCHHKFRENTYKF 1019

Query: 845  F--------------EGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFI 890
                            G  D  D+++    +   +     ++ V    + +TE QL  F+
Sbjct: 1020 VVDKIVKQMVDQRLARGLPDADDEEMAEEYEALLNSDDPAVQRVLENANKVTEAQLSSFL 1079

Query: 891  QTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN 950
            + C  RY   ++E G+ +GA+GAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN
Sbjct: 1080 ENCRIRYLRAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 1139

Query: 951  GAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDME 1010
             AK ISTPII AEL   ++E AAR+VKGRIEKT+LG +A  I+   T+  A I + +DM+
Sbjct: 1140 AAKVISTPIIAAELAIPESETAARIVKGRIEKTVLGDIAAVIEESWTNANAYIEVHIDMD 1199

Query: 1011 TIQDAHLCINADIVKESIVQTPKIKLKQQ--HIKVLDFRKLEIFPPVDKSK---IHFELY 1065
             ++   L I+ + +K ++V+  K+K+ +   HI     R        DK K   I+  L 
Sbjct: 1200 AVRRLQLEISLESIKWALVRANKLKIPEGSIHISQKTSRIRIWIDESDKDKGVGIYERLK 1259

Query: 1066 SLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGID 1125
             LK  +P V VKG+  +ER V+ + EK          +K +RLLV G GL  VMG EG+D
Sbjct: 1260 FLKRAIPSVQVKGLPAIERGVVTKDEK---------NEKIHRLLVTGYGLSEVMGTEGVD 1310

Query: 1126 GCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLG 1185
            G KTK+NH+ E QQ LGIEAAR  I +EI  TMK+HGMSID RH+MLL D+MT++GEVLG
Sbjct: 1311 GLKTKTNHVMETQQVLGIEAARSTIYNEIQTTMKSHGMSIDPRHVMLLGDVMTYKGEVLG 1370

Query: 1186 ITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP-LGTGILK 1244
            ITRFG+QKM  SVLMLASFEKT DHLF+AS+  + D I+GVSECIIMG P P  GT +  
Sbjct: 1371 ITRFGVQKMKDSVLMLASFEKTTDHLFDASLYSKKDEIQGVSECIIMGTPAPGCGTSLAS 1430

Query: 1245 I 1245
            I
Sbjct: 1431 I 1431


>gi|134113452|ref|XP_774751.1| hypothetical protein CNBF4300 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50257395|gb|EAL20104.1| hypothetical protein CNBF4300 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1466

 Score = 1139 bits (2946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1321 (47%), Positives = 823/1321 (62%), Gaps = 104/1321 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVT- 59
             R P +E+L++    K+++  C     K   C  CG  NG+VKK+   L I H+  +   
Sbjct: 139  FRRPNLESLQRQSAAKAVLAACK----KQNICTYCGAPNGIVKKS-GPLRISHEPYRAAK 193

Query: 60   ------ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE--- 110
                  E +  F +A+   +     +  A   LNP+ VL LF+R+T  DCE+L L     
Sbjct: 194  MASMKDEWMATFKNAVAENQAVATHLAKAVDDLNPLKVLNLFERITAEDCELLSLHPEVG 253

Query: 111  RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
            RPE  I   I+VPP  IRPSV  +   +NE+D+T +L  I+  N +L   +         
Sbjct: 254  RPEDYIWQYISVPPPCIRPSVASEAG-NNEDDLTAKLAEIVNYNNTLALMMDLGRGIEMI 312

Query: 171  LAGWETLQVEVAQYINSDVRGVPFSMQV--ARPLSGFVQRLKGKQGRFRGNLSGKRVEYT 228
             + WE L   VA YINS   G    MQ   ++P+ GFVQRLKGKQGRFRGNLSGKRV+++
Sbjct: 313  SSNWEVLGQAVALYINSQAPG----MQTIGSKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 368

Query: 229  GRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI--R 286
            GRTVI PDPNL+I EVA+P ++A  L+YPERV+D+N++ +RQ I NG   +PGA ++  +
Sbjct: 369  GRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQFMRQAIINGSKLHPGANVLERK 428

Query: 287  YPDG-TARVLYG-----KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
            + +G T R+        + R + A EL+ G IV RH+ DGD+VLFNRQPSLH++SIMCHR
Sbjct: 429  HENGSTVRISLNVMKDLEARKRYARELQIGDIVHRHVRDGDIVLFNRQPSLHKLSIMCHR 488

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
             R+ PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEAL LM V+ NL TP+NGE 
Sbjct: 489  VRVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMSVKKNLVTPRNGEP 548

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A+ QDF+T+++L++R+D FYDR  F+ +  Y+ D   ++++P P I KPV LWTGKQ+
Sbjct: 549  IIAAIQDFITAAYLLSRRDRFYDRQQFTQIVSYLDDANLKIEMPPPTIWKPVRLWTGKQI 608

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            F++L+RP+   +V VNL  K +T  +        E+     M PNDG++  +NSE++ G 
Sbjct: 609  FNLLMRPNKESKVLVNLEAKCRTLVDP-----AKEDRFPPDMSPNDGYLVIQNSEIMCGV 663

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
              K T+G+G K+ ++ V+LRDYG    +  MNRLAK++ARW+ N GFS+GI+DV P   L
Sbjct: 664  FDKNTVGDGKKNSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLGINDVIPGPIL 723

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
               K   + + Y+ C+V I    +GKL+  PGCD   TLE+ I+  L+ +RE  GK CM 
Sbjct: 724  HASKDARVEKAYDECDVFIDLAKKGKLENAPGCDQEATLESKISKTLSDVREAVGKICMQ 783

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
             L   N+PLIM+ CGSKGS IN++QMVACVGQQ +GG R  NGF DRSLPHF +K+K P 
Sbjct: 784  ELSRHNAPLIMATCGSKGSVINVAQMVACVGQQIIGGSRVRNGFQDRSLPHFRKKSKNPP 843

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSF+SGL+  EF FH M GREGLVDTAVKTA+TGYM+RRL+KALEDL   YD S
Sbjct: 844  SKGFVRNSFFSGLTPPEFLFHAMSGREGLVDTAVKTAETGYMARRLMKALEDLCTHYDLS 903

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQ--RYLSPQQVS 818
            VRN+ G IVQF YGDD +DPA +EG +  P+ + R        C  AG   R L P +V 
Sbjct: 904  VRNSVGGIVQFQYGDDMLDPACLEGDA-TPVEYVRSWTH---ACRTAGNQGRALYPYEVR 959

Query: 819  EIVEK----------------------------------QLAAYGKESCSEAFLNSLRKF 844
             I  +                                         E C   F  +  KF
Sbjct: 960  RIAARIYPESFVPPNFSLSPPKTKSRRRKEPTPPPPVVAPTLPKEWEGCHHKFRENTYKF 1019

Query: 845  F--------------EGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFI 890
                            G  D  D+++    +   +     ++ V    + +TE QL  F+
Sbjct: 1020 VVDKIVKQMVDQRLARGLPDADDEEMAEEYEALLNSDDPAVQRVLENANKVTEAQLSSFL 1079

Query: 891  QTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN 950
            + C  RY   ++E G+ +GA+GAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN
Sbjct: 1080 ENCRIRYLRAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 1139

Query: 951  GAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDME 1010
             AK ISTPII AEL   ++E AAR+VKGRIEKT+LG +A  I+   T+  A I + +DM+
Sbjct: 1140 AAKVISTPIIAAELAIPESETAARIVKGRIEKTVLGDIAAVIEESWTNANAYIEVHIDMD 1199

Query: 1011 TIQDAHLCINADIVKESIVQTPKIKLKQQ--HIKVLDFRKLEIFPPVDKSK---IHFELY 1065
             ++   L I+ + +K ++V+  K+K+ +   HI     R        DK K   I+  L 
Sbjct: 1200 AVRRLQLEISLESIKWALVRANKLKIPEGSIHISQKTSRIRIWIDESDKDKGVGIYERLK 1259

Query: 1066 SLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGID 1125
             LK  +P V VKG+  +ER V+ + EK          +K +RLLV G GL  VMG EG+D
Sbjct: 1260 FLKRAIPSVQVKGLPAIERGVVTKDEK---------NEKIHRLLVTGYGLSEVMGTEGVD 1310

Query: 1126 GCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLG 1185
            G KTK+NH+ E QQ LGIEAAR  I +EI  TMK+HGMSID RH+MLL D+MT++GEVLG
Sbjct: 1311 GLKTKTNHVMETQQVLGIEAARSTIYNEIQTTMKSHGMSIDPRHVMLLGDVMTYKGEVLG 1370

Query: 1186 ITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP-LGTGILK 1244
            ITRFG+QKM  SVLMLASFEKT DHLF+AS+  + D I+GVSECIIMG P P  GT +  
Sbjct: 1371 ITRFGVQKMKDSVLMLASFEKTTDHLFDASLYSKKDEIQGVSECIIMGTPAPGCGTSLAS 1430

Query: 1245 I 1245
            I
Sbjct: 1431 I 1431


>gi|452825408|gb|EME32405.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
          Length = 1423

 Score = 1139 bits (2946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/1290 (47%), Positives = 829/1290 (64%), Gaps = 59/1290 (4%)

Query: 1    MRNPKMEA--LRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD---R 55
            +R+P   A   ++  ++K+I+K C +       CP CG  NG VKK V V+ +IHD    
Sbjct: 138  LRSPITRANPSKRKAVLKNILKLCKSRK----HCPFCGSPNGAVKK-VGVMKLIHDPFSS 192

Query: 56   SKVTES-----LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS- 109
            +K TE      L++F     +  +    +  A   LNP+ VL +  R+   D  +L +  
Sbjct: 193  AKDTEEEKENFLRKFHFVADNLSDVSPHIQKAVDDLNPLRVLEILSRIPPEDVILLGMDP 252

Query: 110  --ERPEKLIITNIAVPPIAIRPSVIMDGS-QSNENDITERLKRIIQTNASLQQELVEANS 166
               RPE L++TN  VPP  +RPSV  D +  SNE+D+T +L  I+  N  LQQ +    +
Sbjct: 253  TYNRPENLLLTNFPVPPACLRPSVCSDPTIGSNEDDLTMKLSEIVHINCILQQAMENGGN 312

Query: 167  AFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVE 226
            A   +  WE LQ+E A+YIN+D+ G+P S    + + G  QRLKGKQGRFRGNLSGKRV+
Sbjct: 313  ASLVMDDWELLQLECARYINADLPGLPPSATSGKTIRGLCQRLKGKQGRFRGNLSGKRVD 372

Query: 227  YTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIR 286
            ++ RTVISPDPNL I +V +P+ +A+ LT+PERV+ +NI++L + + NGPD +PGA  + 
Sbjct: 373  FSSRTVISPDPNLSIEQVGVPVYVAKQLTFPERVTKYNIKQLSKAVLNGPDIHPGANFVE 432

Query: 287  YPDG-----TARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRA 341
              DG     T R L    R ++A EL  G +V+RHL D D+VLFNRQPSLHR+SIMCHR 
Sbjct: 433  LKDGKFGSWTKRFLRYGDRKKIAQELSLGLVVERHLRDNDIVLFNRQPSLHRVSIMCHRV 492

Query: 342  RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEIL 401
            ++ P RT R NE VC PYNADFDGDEMNMHVPQTEEAR EA  LM VQ NL TP+NGE L
Sbjct: 493  KVFPCRTFRLNECVCTPYNADFDGDEMNMHVPQTEEARAEAATLMCVQENLVTPRNGEPL 552

Query: 402  VASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVD--LPTPAILKPVELWTGKQ 459
            +A+TQDFL++ +  T KD + DRA F+ +    G      D  LP PAI+KP E+WTGKQ
Sbjct: 553  IAATQDFLSACYKFTCKDVYLDRAEFTRIIFLSGLQSVAYDLKLPNPAIIKPFEMWTGKQ 612

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
              S ++R     +  +   V EK +S+    +  +       +C NDG+VY RN EL+ G
Sbjct: 613  AISFILRLCPGFQT-MTAYVYEKQWSHP---SGYESNFLAPHLCKNDGYVYIRNGELLCG 668

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
            QLGKA+LG+G+K  L+ +L R+ G  A +  M+ ++K ++RW  + GFS+GIDDV P   
Sbjct: 669  QLGKASLGSGSKRSLFYLLSREGGNSAAASAMSMISKFASRWFSDFGFSLGIDDVTPSVI 728

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L  +K +L+   Y+ C+  I+ +    L+ +PGC   QTLE  I  +L++IREDAGK C+
Sbjct: 729  LQARKDELLRAGYKDCDDLIEAFQSRTLEARPGCTVEQTLEVSINAVLSKIREDAGKVCI 788

Query: 640  GSL-PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPR--KA 696
             ++ P  NS + M+ CGSKGS INISQM++CVGQQ+V G R P+GF+ R+LPHF     A
Sbjct: 789  AAIDPKVNSAMAMALCGSKGSNINISQMISCVGQQTVNGCRVPDGFLGRALPHFASGMSA 848

Query: 697  KEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
            + P AKGFV NSF+SG++ATEFFFHTM GREGLVDTAVKTA+TGYM RRL+KALEDLS+ 
Sbjct: 849  RTPWAKGFVKNSFFSGMTATEFFFHTMAGREGLVDTAVKTAETGYMQRRLMKALEDLSVN 908

Query: 757  YDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGE--PLNFDRLLMKVKA--TCPPAGQRYL 812
            YDN+VR + G +VQFLYGDDGMDP  +EG SG   PLN ++LL   KA  T    G+  L
Sbjct: 909  YDNTVRYSDGTVVQFLYGDDGMDPTVVEGASGANCPLNLEQLLEDSKAEGTIKSKGEPRL 968

Query: 813  SPQQVSEIVEK-QLAAYGKESCSEAFLNSLR---KFFEGQQDKLDKKIKFVEDIGWDDKS 868
            +P +V    +     ++G    SE+ L  LR    F      K + +++ +         
Sbjct: 969  NPDEVIHYADSLTFHSFGAFEDSESHLKILRDVKNFLSSIARKHEMELERISSSC--SNG 1026

Query: 869  QILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTF 928
             +L +      G+ + QL+  ++    + +  ++E GTA+GAIGAQSIGEPGTQMTLKTF
Sbjct: 1027 SMLRDTIDAAFGLRKSQLDALVRRIVHKLQRFKIEPGTAVGAIGAQSIGEPGTQMTLKTF 1086

Query: 929  HFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQV 988
            HFAGVASMNIT GVPRIKEIIN +  I+TP+ITAEL   ++   AR+VKGRIE+T LG++
Sbjct: 1087 HFAGVASMNITLGVPRIKEIINASPIINTPVITAELVSPNDITIARIVKGRIERTTLGEI 1146

Query: 989  AKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRK 1048
               IK V       I + LD E I    L ++ ++V+ +IV   K++LK+  I V+   +
Sbjct: 1147 CNFIKEVYRRNQVYISLQLDKELISRLQLDVDVNVVRNAIVNNSKLRLKENDIAVVSDDR 1206

Query: 1049 LEIFPPVDKS-KIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYR 1107
            L IF P   S  ++F++ SLK  LP V+V+GI +++R VI +K           + K Y+
Sbjct: 1207 LHIFVPSKASGDLYFQMNSLKRQLPHVVVQGISSIKRAVIHQK-----------DDKSYQ 1255

Query: 1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
            LLVEG+ L +VM   G++G  T SNH+  V++ LGIEAAR  +  EI  TM +HGMSID 
Sbjct: 1256 LLVEGSDLLSVMTTAGVEGTCTTSNHVIIVEKVLGIEAARKTVASEIQYTMASHGMSIDT 1315

Query: 1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
            RH+ LLAD+M+FRGE+LGITRFGI KM  S +MLASFEKT DHLF+A++    D + GVS
Sbjct: 1316 RHVALLADVMSFRGEILGITRFGIGKMKTSAIMLASFEKTVDHLFDAALYKTQDDVVGVS 1375

Query: 1228 ECIIMGIPMPLGTGILKIRQRD----AVPP 1253
            EC+IMG+P+PLGTG+  + + D     VPP
Sbjct: 1376 ECVIMGMPVPLGTGLFGLLRNDRNSVVVPP 1405


>gi|345567741|gb|EGX50669.1| hypothetical protein AOL_s00075g95 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1442

 Score = 1138 bits (2944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/1303 (46%), Positives = 836/1303 (64%), Gaps = 83/1303 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            +R P ++ LR+  + K I ++C     K   C  CG ING VKK V  L +IHD+ +   
Sbjct: 138  IRKPGIDNLRRVQICKKINEQCR----KTKACFVCGAINGTVKK-VGPLKVIHDKFRAFN 192

Query: 61   SL---------------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
            S                + F  A    ++    +  A   LNP+ VL LFK+++  DCE+
Sbjct: 193  SSNAASKVPPEAKVIFDKSFMEAKKTNQDLDKHIRKAMDDLNPLKVLNLFKKVSPADCEL 252

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L +     RPE  +   +  PP+ IRPSV  + + SNE+D+T +L +I +T+A ++  L+
Sbjct: 253  LGMDPGQGRPEMFLWQYMPAPPVCIRPSVSQEDA-SNEDDLTVKLAQITETSALIRAGLL 311

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            +       +  WE +Q+++AQY+NSD+ GV   +Q  +P+ G  QRLKGKQGRFRGNLSG
Sbjct: 312  KGIPIQTLMEQWEWMQLQIAQYVNSDLPGV--QLQGTKPIRGICQRLKGKQGRFRGNLSG 369

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I +VA+P+ +A+ LTYPERV+D+N  KL++ ++NG DKYPGA
Sbjct: 370  KRVDFSGRTVISPDPNLSIEQVAVPMLVAKNLTYPERVTDYNRGKLQELVRNGVDKYPGA 429

Query: 283  RMIRYPDGTARVLYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
              +   D   +  + KF  R++ A EL  G IV+RHLEDGDVVLFNRQPSLH++SI+ H 
Sbjct: 430  NFVVKKDLQYKT-WLKFGNRDKTAQELAIGDIVERHLEDGDVVLFNRQPSLHKLSILSHY 488

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
             ++ PW+T R NE VCNPYNADFDGDEMN+HVPQTEEARTEA+ LMGV+NNLCTP+NGE 
Sbjct: 489  VKVRPWKTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAINLMGVKNNLCTPRNGEP 548

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A+ QDF+T+++L++ KD F+DR +F+ +C +M +G +++DLP PA++KP  +WTGKQL
Sbjct: 549  IIAAIQDFITAAYLLSNKDNFFDRKSFATLCMFMVNGNEQIDLPPPAVIKPEAMWTGKQL 608

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            FSVLI+P+   +V +NL  K + +  K +     +      +CPNDG++  R SE++ G 
Sbjct: 609  FSVLIKPNKKSKVVLNLDAKCRDF--KAVPGMAPD------LCPNDGWLVIRGSEVMCGL 660

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + K+T+G+G K  ++ V+LRDYGA      MNRLAKL ARW+GN GFSIGI+DV P ++L
Sbjct: 661  MDKSTVGSGKKSSVFYVILRDYGADEAVAAMNRLAKLCARWLGNRGFSIGINDVSPGQKL 720

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
             D K   +   Y+ C+  I ++  G+L+   GCD   TLE  I+ +L+++R+  G  CM 
Sbjct: 721  QDLKQMHVMAAYKECDNLIDDFRLGRLEKAAGCDEETTLENKISGVLSKVRDKVGDICMS 780

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
             L   NSPLIM+  GSKGS IN+SQMVACVGQQ + G+R PNGF DRSLPHF + +KEP 
Sbjct: 781  ELSRMNSPLIMANSGSKGSKINVSQMVACVGQQIISGKRVPNGFQDRSLPHFQKNSKEPP 840

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSF+SGL+ TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD++
Sbjct: 841  SKGFVRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDHT 900

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEI 820
            VRN+   +VQF YG D +DP +MEG + +P+N  R     +          L P ++  +
Sbjct: 901  VRNSSAGVVQFQYGGDNLDPVDMEGDA-KPVNLVRTYNHAENLTWDNNDPSLLPYEIIAM 959

Query: 821  ---------VEKQLAAYGKE---SCSEAFLNSLRKFFEGQQ---DKLDKKIKFVE----- 860
                     +E  LA  G         AF  SL  F + +     ++ +++  +      
Sbjct: 960  CRELLDFDELEAMLARLGPTDEIDSKVAFRQSLYHFVKERAVECARIRERVGLMACLEPV 1019

Query: 861  -----DIGW-DDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQ 914
                 D+G+ D  +   + +  +   I+ + L  FI  C ++Y   +VE GTA+GA+GAQ
Sbjct: 1020 DSDEYDMGYIDSLNATAKAIVDRVHKISARTLREFISQCMTKYSRSKVEPGTAVGAVGAQ 1079

Query: 915  SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAAR 974
            SIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K ISTPII  EL    +  +AR
Sbjct: 1080 SIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKSISTPIIKCELVNKSDIRSAR 1139

Query: 975  VVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKI 1034
             VKGRIEKT L  +   I+ V +   + I I +D  TI    L +  + +  +I + PK+
Sbjct: 1140 YVKGRIEKTYLEDIIFYIEDVCSPDDSYISIKIDEATIDKLGLELTIEDIMTAITRAPKL 1199

Query: 1035 KLKQQHIKVLDFR-KLEIFPPVDKS--------KIHFELYSLKNVLPMVIVKGIKTVERV 1085
            K+ +  +KV   R ++ ++   ++          +H  + +LK VLP V+VKG     R 
Sbjct: 1200 KIDKSQLKVTGSRIRIYVYELSEREMKRSKEDLSVHQRIQALKRVLPRVVVKGYPEATRA 1259

Query: 1086 VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
            VI+  E                L VEG GL+  M  +G+ G KTK+N + E++  LGIEA
Sbjct: 1260 VISTDESSGNNT----------LCVEGYGLRQCMNTDGVVGTKTKTNSVMEMRTVLGIEA 1309

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
            AR  IIDEI+ TM+ HGM +D RH+ LL D+MT++GEVLGITRFG+ KM  SVL LASFE
Sbjct: 1310 ARFTIIDEISFTMREHGMDVDPRHIQLLGDVMTYKGEVLGITRFGLAKMRDSVLQLASFE 1369

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            KT DHLF+A+ + + D+IEGVSECII+G  M +GTG  ++ +R
Sbjct: 1370 KTTDHLFDAAFHTKKDKIEGVSECIILGQSMGIGTGAFQVVRR 1412


>gi|321260548|ref|XP_003194994.1| DNA-directed RNA polymerase III largest subunit [Cryptococcus gattii
            WM276]
 gi|317461466|gb|ADV23207.1| DNA-directed RNA polymerase III largest subunit, putative
            [Cryptococcus gattii WM276]
          Length = 1463

 Score = 1137 bits (2942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1324 (47%), Positives = 827/1324 (62%), Gaps = 110/1324 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVT- 59
             R P +E+L++    K+++  C     K   C  CG  NG+VKK+   L I H+  +   
Sbjct: 139  FRRPNLESLQRQSAAKAVLAACK----KQNICTYCGAPNGIVKKS-GPLRISHEPYRAAK 193

Query: 60   ------ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE--- 110
                  E +  F +A+   +     +  A   LNP+ VL LF+R+T  DCE+L L     
Sbjct: 194  MASMKDEWMATFKNAVAENQAVATHLGKAVDDLNPLKVLNLFERVTAEDCELLSLHPDVG 253

Query: 111  RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
            RPE  I   I+VPP  IRPSV  +   +NE+D+T +L  I+  N +L   +         
Sbjct: 254  RPEDYIWQYISVPPPCIRPSVASEAG-NNEDDLTAKLAEIVNYNNTLALMMDLGRGIEMI 312

Query: 171  LAGWETLQVEVAQYINSDVRGVPFSMQV--ARPLSGFVQRLKGKQGRFRGNLSGKRVEYT 228
             + WE L   VA YINS   G    MQ   ++P+ GFVQRLKGKQGRFRGNLSGKRV+++
Sbjct: 313  SSNWEVLGQAVALYINSQAPG----MQTIGSKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 368

Query: 229  GRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI--R 286
            GRTVI PDPNL+I EVA+P ++A  L+YPERV+D+N++ +RQ I NG   +PGA ++  +
Sbjct: 369  GRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQLMRQAIINGSKLHPGANVLERK 428

Query: 287  YPDG-TARVLYG-----KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
            + +G T R+        + R + A EL+ G +V RH+ DGD+VLFNRQPSLH++SIMCHR
Sbjct: 429  HENGSTVRISLNVMKDLEARKRYARELQIGDVVHRHVRDGDIVLFNRQPSLHKLSIMCHR 488

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
             R+ PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEAL LM V+ NL TP+NGE 
Sbjct: 489  VRVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMSVKKNLVTPRNGEP 548

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A+ QDF+T+++L++R+D FYDR  F+ +  Y+GD   ++++P P I KPV LWTGKQ+
Sbjct: 549  IIAAIQDFITAAYLLSRRDRFYDRQQFTQIASYLGDANLKIEMPPPTIWKPVRLWTGKQI 608

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            F++L+RP+   +V VNL  K +T  +        E+     M PNDG++  +NSE++ G 
Sbjct: 609  FNLLMRPNKESKVLVNLEAKCRTLVDP-----AKEDRFPPDMSPNDGYLVIQNSEIMCGV 663

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
              K T+G+G K+ ++ V+LRDYG    +  MNRLAK++ARW+ N GFS+GI+DV P   L
Sbjct: 664  FDKNTVGDGKKNSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLGINDVIPGPIL 723

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
               K   + + Y  C+V I     GKL+  PGCD   TLE+ I+  L+ +RE  GK CM 
Sbjct: 724  HASKDARVEKAYGECDVFIDLAKRGKLENAPGCDQEATLESKISKTLSDVREAVGKICMQ 783

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
             L   N+PLIM+ CGSKGS IN++QMVACVGQQ +GG R  NGF DRSLPHF +K+K P 
Sbjct: 784  ELSRHNAPLIMATCGSKGSVINVAQMVACVGQQIIGGSRVRNGFQDRSLPHFRKKSKNPP 843

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSF+SGL+  EF FH M GREGLVDTAVKTA+TGYM+RRL+KALEDL   YD S
Sbjct: 844  SKGFVRNSFFSGLTPPEFLFHAMSGREGLVDTAVKTAETGYMARRLMKALEDLCTHYDLS 903

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQ--RYLSPQQVS 818
            VRN+ G IVQF YGDD +DPA +EG +  P+ + R        C  AG   R L P +V 
Sbjct: 904  VRNSVGGIVQFQYGDDMLDPACLEGDA-TPVEYVRSWTH---ACRTAGNQGRALFPYEVR 959

Query: 819  EIVEK--------------QLAAYGK--------------------ESCSEAFLNSLRKF 844
             I  +                   G+                    E C   F  +  KF
Sbjct: 960  RIAARIYPESFILPSPPPSPPKTKGRRRKEPTPPPPVVAPALPKEWEGCHHKFRENTYKF 1019

Query: 845  FEGQQDKLDKKI---KFVEDIGWDDKSQILEE--------------VTHKTSGITEKQLE 887
                 DK+ K++   +    +   D  ++ EE              V    + +TE Q+ 
Sbjct: 1020 V---VDKIVKQMVDQRLARGLPDADDEEMAEEYEALLYSDDPAVQRVLENANKVTEAQVN 1076

Query: 888  VFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKE 947
             F++ C  RY   ++E G+ +GA+GAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKE
Sbjct: 1077 SFLENCRIRYLRAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKE 1136

Query: 948  IINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIAL 1007
            IIN AK ISTPII AEL   ++E AAR+VKGRIEKT+LG +A  I+   T+  A I + +
Sbjct: 1137 IINAAKVISTPIIAAELAIPESETAARIVKGRIEKTVLGDIAAVIEESWTNANAYIEVHI 1196

Query: 1008 DMETIQDAHLCINADIVKESIVQTPKIKLKQQ--HIKVLDFRKLEIFPPVDKSK---IHF 1062
            DM+ ++   L I+ + +K ++V+  K+K+ +   HI     R        DK K   I+ 
Sbjct: 1197 DMDAVRRLQLEISLESIKWALVRANKLKIPEGSIHISQKTSRIRIWIDESDKDKGVGIYE 1256

Query: 1063 ELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAE 1122
             L  LK  +P V VKG+  +ER V+ + EK          +K +RLLV G GL  VMG E
Sbjct: 1257 RLKFLKRAIPSVQVKGLPAIERGVVTKDEK---------NEKIHRLLVTGYGLSEVMGTE 1307

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
            G+DG KTK+NH+ E QQ LGIEAAR  I +EI  TMK+HGMSID RH+MLL D+MT++GE
Sbjct: 1308 GVDGLKTKTNHVMETQQVLGIEAARSTIYNEIQTTMKSHGMSIDPRHVMLLGDVMTYKGE 1367

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP-LGTG 1241
            VLGITRFG+QKM  SVLMLASFEKT DHLF+AS+  + D I+GVSECIIMG P P  GT 
Sbjct: 1368 VLGITRFGVQKMKDSVLMLASFEKTTDHLFDASLYSKKDEIQGVSECIIMGTPAPGCGTS 1427

Query: 1242 ILKI 1245
            +  I
Sbjct: 1428 LASI 1431


>gi|321475339|gb|EFX86302.1| hypothetical protein DAPPUDRAFT_45101 [Daphnia pulex]
          Length = 1389

 Score = 1137 bits (2940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/1276 (48%), Positives = 832/1276 (65%), Gaps = 60/1276 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            +RNP +  LRK    K I K+   +  K  +CP C  +NG+VKK   +L I H++ +   
Sbjct: 134  LRNPNLPYLRK----KVIRKQIQELCKKVKRCPHCDEMNGVVKKC-GMLKISHEKFRNVK 188

Query: 58   ---VTESLQEFASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYLSE--- 110
               + + L  + +A+   KE +  ++ A   +LNP+ VL L +R+ D   + L ++    
Sbjct: 189  KPIIEKELAAYDNAVQFNKEIEPMLSSALIKMLNPIEVLHLLERIPDEHIQFLLMNPEHG 248

Query: 111  RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             P+ +I+T + VPP+ IRPSV+ D  S +NE+D+T +L  I+  N  + +  +   ++ K
Sbjct: 249  HPKDMILTRVPVPPVCIRPSVVSDFKSGTNEDDLTMKLTEIVFLNGVIVKHRLLGVTSQK 308

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             L  W+ LQ++ A YINS + G+P  MQ  +   G VQRLKGKQGRFRGNLSGKRV ++G
Sbjct: 309  ILEDWDFLQLQCALYINSQLSGIPLCMQPKKKSRGLVQRLKGKQGRFRGNLSGKRVNFSG 368

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
            RTVISPDPNL+I +V +P  +A++LTYP  V++ NIE +R+ ++NGPD +PGA  ++  D
Sbjct: 369  RTVISPDPNLRIDQVGVPELIAKLLTYPTLVNEANIELMRKLVRNGPDIHPGAIFLKEKD 428

Query: 290  G--TARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
               T  + YG  R  LA  LK G +++RH+ D D+VLFNRQPSLH++SIMCHRA+I+P  
Sbjct: 429  SKLTRSLKYGN-RETLARNLKRGDLIERHMMDEDIVLFNRQPSLHKLSIMCHRAKILPHL 487

Query: 348  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQD 407
            T R NE VC PYNADFDGDEMN+H+PQTEEAR EAL+LMG ++NL TP+NGE+L+A+ QD
Sbjct: 488  TFRLNECVCTPYNADFDGDEMNLHLPQTEEARAEALILMGNKSNLVTPRNGELLIAAIQD 547

Query: 408  FLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRV-DLPTPAILKPVELWTGKQLFSVL 464
            F+T ++L+T KD F+DRA    M   M  GD ++ V  LP P I KP  +W+GKQ+FS++
Sbjct: 548  FITGAYLLTLKDAFFDRAKTCQMVASMLAGDEVNMVIKLPPPCIQKPAAMWSGKQIFSLI 607

Query: 465  IRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKA 524
            +RP+    + VNL  K K YS K            E  C NDGF+  RNSE+++G + K+
Sbjct: 608  LRPNPGNPIKVNLRTKGKEYSKK-----------NEEFCVNDGFLLVRNSEVLAGCVDKS 656

Query: 525  TLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKK 584
            T+G+G+K  ++ VLLRDYG       M +L ++++ ++ N GFSIGI DV P K L  +K
Sbjct: 657  TIGSGSKINIFYVLLRDYGEDFAIQAMWKLCRVASYYMMNRGFSIGIGDVTPGKTLLKEK 716

Query: 585  GKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW 644
             KL+   Y  C+  I+    G+L   PGC+  ++LE+ I   L+ IR+ AG+ C   L  
Sbjct: 717  QKLLDSGYSKCDEYIRLLTIGQLPCLPGCNVEESLESKILKELSGIRDQAGEVCKKELHP 776

Query: 645  RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 704
             NSPL+MS+ GSKGS INISQM+ACVGQQ++ G+R PNGF DRSLPHF R +K PAAKGF
Sbjct: 777  SNSPLVMSKSGSKGSYINISQMIACVGQQALNGKRVPNGFEDRSLPHFKRHSKIPAAKGF 836

Query: 705  VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
            V+NSFYSGL+ TEFFFHTMGGREGLVDTAVKTADTGYM RRLIK+LEDL  QYD++VRN+
Sbjct: 837  VSNSFYSGLTPTEFFFHTMGGREGLVDTAVKTADTGYMQRRLIKSLEDLCCQYDSTVRNS 896

Query: 765  GGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE----I 820
             G I+QF+YG DG+DP  ME K   P++F R L  +KA  P   +  L   ++      I
Sbjct: 897  AGEIIQFVYGGDGLDPTYMEAKD-RPVDFQRTLDHIKAASPYPDEEPLDDNELEHAFNTI 955

Query: 821  VEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSG 880
            +E      G +     F + LR F E Q     K+IK V +I   D S+ L  V      
Sbjct: 956  METDFKTLGID-----FKHELRVFVESQV----KRIKSVREIYQMD-SRALHPVEKHLER 1005

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            IT  QL  F      +Y   ++E GTA+GA+ AQSIGEPGTQMTLKTFHFAGVASMNITQ
Sbjct: 1006 ITVGQLVEFCDFAKEKYERAKIEPGTAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITQ 1065

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRL 1000
            GVPRIKEIIN +K ISTP+I+ +L  +D+   AR VKGRIEKT LG+V +  + V     
Sbjct: 1066 GVPRIKEIINASKAISTPVISTQLLKDDDPEYARRVKGRIEKTTLGEVTEYFEEVYLPDG 1125

Query: 1001 ASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP-PVDKSK 1059
              ++I LDM  I+   L ++A  ++ S+  T K+K+K   + V+    + + P P  KS 
Sbjct: 1126 CYMLIKLDMNRIRLLKLEVDASSIRLSLC-TGKLKIKPNFVAVVSESIITVKPAPNAKSS 1184

Query: 1060 IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVM 1119
             +  +  LK  LP V++KG+ TV R VI         + E  +  +Y LLVEG  ++ VM
Sbjct: 1185 TYHVMQHLKEELPKVVIKGLPTVSRAVI--------NIDETRKPPRYYLLVEGNNMREVM 1236

Query: 1120 GAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTF 1179
               G+ G  T SN+I EV  TLGIEAA+  I  EI  TM++HGMS+D+RH+ LL+DLM+ 
Sbjct: 1237 ATYGVQGSSTTSNNILEVSSTLGIEAAKATIAKEIKFTMESHGMSVDRRHVALLSDLMSC 1296

Query: 1180 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLG 1239
            RGE+LGITR G+ KM +SVLMLASFE T+DHLF+A+  G++D + GVSECIIMGIPM +G
Sbjct: 1297 RGEILGITRNGLNKMKESVLMLASFESTSDHLFDAAYYGQEDEVTGVSECIIMGIPMSIG 1356

Query: 1240 TGILKIRQR--DAVPP 1253
            TG  K+  +   +VPP
Sbjct: 1357 TGAFKLLYKTGKSVPP 1372


>gi|405974578|gb|EKC39212.1| DNA-directed RNA polymerase III subunit RPC1 [Crassostrea gigas]
          Length = 1368

 Score = 1135 bits (2937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/1236 (49%), Positives = 821/1236 (66%), Gaps = 53/1236 (4%)

Query: 9    LRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--------VTE 60
            L++  L K I  KC  M+     C  CG  NGMVKK   +L IIHD+ K        + E
Sbjct: 136  LQRKVLKKKIYDKCRKMSV----CVSCGAYNGMVKKC-GLLKIIHDKYKQRKGTDPVIEE 190

Query: 61   SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLII 117
             +  F +A+ H K+ +  ++    +LNP+ V  +F ++ + +  +L ++     P+ LI+
Sbjct: 191  FMGSFEAAMEHNKDLEPLLSKTQEVLNPIKVQQIFLQIPEEEIPLLMMNPEVGSPKDLIL 250

Query: 118  TNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWET 176
            T I VPPI IRPSV+ D  + +NE+DIT ++  I+  N  +Q+           +  W+ 
Sbjct: 251  TRILVPPICIRPSVVSDLKAGTNEDDITMKMTEIMFLNDVIQKHKATGAKMSMIMEDWDY 310

Query: 177  LQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPD 236
            LQ++VA   NS+  G+P  MQ  +   GFVQRLKGKQGRFRGNLSGKRV+++GRTVISPD
Sbjct: 311  LQLQVALLYNSETSGIPLHMQPKKMTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPD 370

Query: 237  PNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTAR--V 294
            PN++I +VA+P+ +A++LTYPERV+  NI+ +R+ ++NG D +PGA  I+  D   +  +
Sbjct: 371  PNMRIDQVAVPVHVAKVLTYPERVNKANIKLMRKLVKNGCDTHPGANFIQQRDNNMKRYL 430

Query: 295  LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNES 354
             YG  R ++A ELK G IV+RHL D D++LFNRQPSLH++SI    A++MP RT RFNE 
Sbjct: 431  RYGN-REKIAKELKFGDIVERHLIDNDIILFNRQPSLHKLSIQAFYAKVMPHRTFRFNEC 489

Query: 355  VCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFL 414
             CNP+NADFDGDEMN+H+PQTEEA+ EA+ LMG ++N+ TP+NGE L+A+ QDF+T  +L
Sbjct: 490  CCNPFNADFDGDEMNLHLPQTEEAKAEAITLMGSKSNIITPRNGEPLIAAIQDFITGGYL 549

Query: 415  ITRKDTFYDRAAFSLMCCYMGDGMDR---VDLPTPAILKPVELWTGKQLFSVLIRPHANM 471
            IT+KD F DRA    +   M  G +R   +DLP PAI+KP++LWTGKQ+FSVL+RP+ N 
Sbjct: 550  ITQKDVFLDRARACQLIASMLSGRERTLKIDLPPPAIIKPIKLWTGKQIFSVLLRPNKNS 609

Query: 472  RVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNK 531
             V  NL  K K YS              E +C ND FV  RNSEL+ G + K TLG G+K
Sbjct: 610  PVRANLWTKGKNYSGG------------EDLCINDSFVVIRNSELLCGAMDKGTLGGGSK 657

Query: 532  DGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISEN 591
            + ++ V+LRD+G    +  ++RLA+L   ++ + GFSIGI DV P   L   K  L+ + 
Sbjct: 658  NNIFYVILRDFGEQEAADALSRLARLCPAYLSHRGFSIGIGDVTPGAGLIKAKNNLLEDG 717

Query: 592  YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIM 651
            Y  C+  I++  EGKLQ +PGC   +TLEA+I   L+ IR+ AGKAC+  L   NSPL M
Sbjct: 718  YTKCDSFIRDLEEGKLQTQPGCSEEETLEAMILRELSVIRDHAGKACLRELHKSNSPLNM 777

Query: 652  SQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYS 711
            + CGSKGS INISQM+ACVGQQ++ G+R PNGF DR+LPHF + +K+PAA+GFV NSFYS
Sbjct: 778  AICGSKGSFINISQMIACVGQQAISGKRTPNGFEDRALPHFEKFSKDPAARGFVENSFYS 837

Query: 712  GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQF 771
            GL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL   YD +VR++   IVQF
Sbjct: 838  GLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSHYDLTVRSSTNDIVQF 897

Query: 772  LYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQR--YLSPQQVSEIVEKQLAAYG 829
            +YG D +DPA+MEGK  +P++F R+   +KA    + +    LS   +   V   L    
Sbjct: 898  VYGGDSLDPASMEGKD-QPIDFKRVYDHIKANTRSSFREEPSLSGADLRAFVNTTLQENL 956

Query: 830  KESCSEAFLNSLRKFFEGQQDKLDK-KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEV 888
             +S S+ F   L  F +    ++DK + KF      + +   L  V  + + IT  Q + 
Sbjct: 957  FKSFSDDFKKDLINFIDDVGSEIDKTRQKFGM---MNAQRSELPPVLFELNRITTSQAKQ 1013

Query: 889  FIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEI 948
            F+  C  ++   ++E GTA+GA+ AQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEI
Sbjct: 1014 FLNICRDKFMKSQIEPGTAVGAVCAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEI 1073

Query: 949  INGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALD 1008
            IN +K ISTPIITAEL  + +   ARVVKGRIEKT LG+V++ I+ V       I++ LD
Sbjct: 1074 INASKNISTPIITAELMVDSDPEFARVVKGRIEKTTLGEVSEYIEEVFLPDDCFILVKLD 1133

Query: 1009 METIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP-PVDKSKIHFELYSL 1067
            M+ I+   L +N D ++ES+ ++ K+++K Q I++     L + P    KS +++ L  L
Sbjct: 1134 MDRIRLLKLEVNVDSIRESLCKS-KLRVKPQDIQIHSSAVLSVRPRETSKSSLYYVLQML 1192

Query: 1068 KNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGC 1127
            K  LP V++KGI+ V R VI   EK+       GE   Y+LLVEG  L AVM   GI G 
Sbjct: 1193 KKELPSVMIKGIQNVTRAVIHIDEKK-------GE--TYKLLVEGDNLLAVMATPGIKGT 1243

Query: 1128 KTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGIT 1187
            +  SN+ F +++TLGIEAAR  I++E+N TM +HGMSID RH+MLLADLMTF+GEVLGIT
Sbjct: 1244 RACSNNTFAMERTLGIEAARTTIMNEVNFTMSSHGMSIDIRHVMLLADLMTFKGEVLGIT 1303

Query: 1188 RFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRI 1223
            RFG+ KM +SVLMLASFEKTADHLF A+ +G+ D I
Sbjct: 1304 RFGLAKMKESVLMLASFEKTADHLFEAAYHGQRDTI 1339


>gi|321473720|gb|EFX84687.1| hypothetical protein DAPPUDRAFT_222950 [Daphnia pulex]
          Length = 1387

 Score = 1135 bits (2936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/1274 (47%), Positives = 832/1274 (65%), Gaps = 53/1274 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ PK+  L K  L K I + C     K  +CP C  INGMVKK   +L I H++ +   
Sbjct: 129  LKGPKIPYLNKKALRKQIQEACK----KVTRCPNCNDINGMVKKC-GMLKISHEKFRSIK 183

Query: 58   -----VTESLQEFASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                 +   L  + +A+   KE +  ++     +LNP+ VL LF+R+ D D + L ++  
Sbjct: 184  KDNVILKNELVAYENAVQFNKEIEPMLSSGLIKMLNPLEVLHLFERIPDEDVQFLVMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               P+ +I+T + VPP+ IRPSV+ D  S +NE+D+T +L  I+  N  + +  +    +
Sbjct: 244  HGHPKDMILTRVPVPPVCIRPSVVSDLKSGTNEDDLTMKLTEIVFLNDVIVKHRLSGAKS 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               L  W+ LQ++ A YINS++ G+P +MQ  +P  G VQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMILEDWDFLQLQCALYINSELSGIPLNMQPKKPSRGLVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY 287
            +GRTVISPDPNL+I +V +P  +A+ILT+P RV++ NI+ +RQ ++NG D +PGA  ++ 
Sbjct: 364  SGRTVISPDPNLRIDQVGVPELVAKILTFPTRVNEANIDLMRQLVRNGADVHPGANYLQE 423

Query: 288  PDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
                 +    YG  R  LA  LK G +++RH+ D D+VLFNRQPSLH++SIMCHRA+I+P
Sbjct: 424  KGSELKKFLKYGN-RESLARNLKLGDLIERHMMDEDIVLFNRQPSLHKLSIMCHRAKILP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEAR EA +LMG + NL TP+NGE+L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEAWILMGNKFNLVTPRNGELLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRV-DLPTPAILKPVELWTGKQLFS 462
            QDF+T ++L+T KD F+DRA    M   M  GD ++ V  LP P I KP  LW+GKQ+FS
Sbjct: 543  QDFITGAYLLTLKDAFFDRAKTCQMVASMLAGDEVNMVIKLPPPCIQKPAALWSGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            +++RP+   R+ VNL  K K YS K            E  C NDGF+  RNSE+++G + 
Sbjct: 603  LILRPNPGDRIKVNLRTKGKEYSKK-----------NEEFCVNDGFLLVRNSEVLAGCVD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K+T+G+G+K  ++ VLLRDYG       M +L ++++ ++ N GFSIGI DV P K L  
Sbjct: 652  KSTIGSGSKINIFYVLLRDYGEDFAIQAMWKLCRVASYYMMNRGFSIGIGDVTPGKTLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
            +K  L+   Y  C+  I+    G+L   PGC+  ++LE+ I   L+ IR+ AG+ C   L
Sbjct: 712  EKQTLLDTGYSKCDEYIRLLTLGQLPCLPGCNEEESLESKILKELSGIRDQAGEVCKKEL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL+MS+ GSKGS INISQM+ACVGQQ++ G+R PNGF DRSLPHF R +K PAAK
Sbjct: 772  HPSNSPLVMSKSGSKGSYINISQMIACVGQQALNGKRVPNGFEDRSLPHFKRHSKIPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFV+NSFYSGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD++VR
Sbjct: 832  GFVSNSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCCQYDSTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            N+ G I+QF+YG DG+DP  ME K   P++F R L  +KA  P   +  L   ++ +   
Sbjct: 892  NSTGEIIQFVYGGDGLDPTYMEAKD-RPVDFQRALDHIKAASPYPDEEPLDDIELQQAFN 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +     +     F + LR F E Q     K+IK V  + +  + + L  V      IT
Sbjct: 951  TIMDTDSFKMLGVDFQHELRVFVESQV----KRIKKVRQL-FKMEGRSLLRVEKHLERIT 1005

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              QL  F      +Y   ++E GTA+GA+ AQSIGEPGTQMTLKTFHFAGVASMNITQGV
Sbjct: 1006 VGQLVEFCDFSKEKYERAKIEPGTAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITQGV 1065

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTP+I+ +L  +D+   AR VKGRIEKT LG+V +  + V       
Sbjct: 1066 PRIKEIINASKAISTPVISTQLLKDDDPEYARRVKGRIEKTTLGEVTEYFEEVYLPDDCF 1125

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP-PVDKSKIH 1061
            ++I LDM  I+   L ++A+ ++ S+  T K+K+K   IKV+    + + P P  KS ++
Sbjct: 1126 MLIKLDMNRIRLLKLEVDANSIQWSLC-TCKLKIKPSFIKVISETIVIVKPAPSSKSSMY 1184

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
              +  LK  LP V++KG+ TV R VI         + +  +  +Y LLVEG  ++ VM  
Sbjct: 1185 HVMQHLKETLPRVVIKGLPTVSRAVI--------NIDDTRKPPRYYLLVEGDNMREVMAT 1236

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G  T SN+I EV  TLGIEAA+  I  EI  TM++HGMS+D+RH+ LL+DLM+ RG
Sbjct: 1237 YGVKGTSTTSNNILEVYTTLGIEAAKATIAKEIQYTMESHGMSVDRRHVALLSDLMSCRG 1296

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            E+LGITR G+ KM +SVLMLASFE+T+DHLF+AS  G++D I GVSECIIMGIPM +GTG
Sbjct: 1297 EILGITRHGLAKMKESVLMLASFERTSDHLFDASYYGQEDEITGVSECIIMGIPMSIGTG 1356

Query: 1242 ILKIRQR--DAVPP 1253
              K+  +   +VPP
Sbjct: 1357 AFKLLYKTGKSVPP 1370


>gi|345489196|ref|XP_001602571.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Nasonia
            vitripennis]
          Length = 1355

 Score = 1135 bits (2935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/1270 (47%), Positives = 827/1270 (65%), Gaps = 53/1270 (4%)

Query: 3    NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK----- 57
            NP +  L +  L K I++K    A K   C  CG +NG VKKA  +L I+H++ K     
Sbjct: 103  NPNLSYLSRKALRKQILEK----AKKCTTCHYCGELNGTVKKA-GLLKIVHEKYKNKKPS 157

Query: 58   ---VTESLQEFASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYLSER-- 111
               V   L E+   +   KE ++ +      ILNP+ V+ L +R+ + D  +L ++ +  
Sbjct: 158  DPIVQTKLAEYHKVVEDNKELESILQSGLISILNPLEVIGLLERIPERDIPLLLMNPQCS 217

Query: 112  -PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             P  LI+T I VPPI+IRPS++ D  + +NE+++T +L  I+  N ++Q           
Sbjct: 218  VPRDLILTRIPVPPISIRPSIVSDLKAGTNEDNLTMKLSEILLINEAIQIHRQRGLKIQN 277

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
                WE LQ+ VA YINS++ G+P SMQ  +   G VQRLKGKQGRFRGNLSGKRV+++ 
Sbjct: 278  YTEDWEFLQLHVALYINSEMSGIPPSMQPQKAGRGLVQRLKGKQGRFRGNLSGKRVDFSS 337

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
            RTVISPDPNL+I +V +PI +A+ILTYPERV+  NIE +R+ ++NGPD +PGA  I    
Sbjct: 338  RTVISPDPNLRIEQVGVPIHVAKILTYPERVNKCNIELMRRLVKNGPDVHPGANFIEIGK 397

Query: 290  GTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
               R  + YG  R ++A +L+ G IV+RHL DGDVVLFNRQPSLH++SIM H+A+++  R
Sbjct: 398  NKERRFLRYGN-RQKMAQDLQYGDIVERHLHDGDVVLFNRQPSLHKLSIMAHKAKVLENR 456

Query: 348  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQD 407
            T RFNE VC PYNADFDGDEMN+H+PQTEEAR EAL+LMG ++NL TP+NGE+L+A+TQD
Sbjct: 457  TFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALVLMGNKSNLVTPRNGELLIAATQD 516

Query: 408  FLTSSFLITRKDTFYDRAAFS-LMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFSVL 464
            F+T  +L+T+KDTF +++  S L+ C +   D   ++ LP PAILKP  +WTGKQ+FSV+
Sbjct: 517  FITGGYLLTQKDTFLNKSQVSQLISCLLAGEDTTMQITLPKPAILKPAIMWTGKQIFSVI 576

Query: 465  IRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKA 524
            +RP+    V  NL  K + Y++             E +C ND +V  RNS+L++G + K+
Sbjct: 577  LRPNEKCPVKANLKTKGRAYTSN------------EELCINDSYVIIRNSQLLAGSMDKS 624

Query: 525  TLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKK 584
            TLG+G K  ++ +LLRD+G    +  M RLA++++ ++ N GFSIGI DV P   L   K
Sbjct: 625  TLGSGAKQNIFYILLRDWGEDVAALVMWRLARIASYFLMNRGFSIGIGDVTPGHSLLRAK 684

Query: 585  GKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW 644
             +L++  Y  C   I++   GKL  +PGC   ++LEA+I   L+ IR+ AGK C+  L  
Sbjct: 685  QELLNNGYGKCTEYIRKMEAGKLPCQPGCSEEESLEAMILKELSVIRDHAGKVCLKELHP 744

Query: 645  RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 704
             NSPL+M+  GSKGS INISQM+ACVGQQ++ G R PNGF DR+LPHF + +K PAAKGF
Sbjct: 745  SNSPLVMALSGSKGSFINISQMIACVGQQAISGHRVPNGFEDRALPHFEKYSKVPAAKGF 804

Query: 705  VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
            V NSFYSGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K+LEDL + YD +VRN+
Sbjct: 805  VENSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCLHYDLTVRNS 864

Query: 765  GGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQ 824
             G IVQ LYG D MDP  MEGK   P+++ R+L  VK+      +  L    + +     
Sbjct: 865  TGDIVQVLYGGDAMDPTYMEGKDC-PVDYKRVLDDVKSRSTHITEDPLDGPGIMKATSLL 923

Query: 825  LAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEK 884
            L +      S+ F   L +F +    K+ +  + +       KS   + V      +T  
Sbjct: 924  LDSEDFACLSDEFKQELAQFLKAVAIKIARVRQHI-------KSNDNQPVYKYIERLTVS 976

Query: 885  QLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 944
            QL  FI TC  +Y   ++E GTA+GA+ AQSIGEPGTQMTLKTFHFAGVASMNITQGVPR
Sbjct: 977  QLAEFIHTCKEKYMKAKIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 1036

Query: 945  IKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIV 1004
            IKEIIN   +ISTPIITA LE + +   AR VKGRIEKT LG++ + I+ V       ++
Sbjct: 1037 IKEIINANPKISTPIITAALENDTDPEFARRVKGRIEKTTLGEITEYIEEVYLPDDCFLL 1096

Query: 1005 IALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFEL 1064
            + +D++ ++   L ++ + ++ S+  T K+KL  +++ +     + I+P   K  +   L
Sbjct: 1097 LKIDIDRVKLLKLEVDVNSIRYSLC-TSKLKLNPKNVVIQGDSIITIYPSKQKHNLSVTL 1155

Query: 1065 YSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGI 1124
              LK+ +P VIVKGI +V R VI           ++  K +Y+L VEG  ++ VM   G+
Sbjct: 1156 TQLKDSIPNVIVKGIASVSRAVIHN--------DDSSGKTRYKLFVEGDNMRDVMATLGV 1207

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
             G KT SN+  EV +TLGIEAAR  I+ EI   M+ HGMSID+RH ML+ADLMT RGEVL
Sbjct: 1208 KGPKTTSNNTIEVFKTLGIEAARATIMTEIKLVMENHGMSIDRRHPMLVADLMTSRGEVL 1267

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
            GITR G+ KM +SVL LASFEKTADHLF+A+  G+ D I GVSE IIMGIP+P+GTGI K
Sbjct: 1268 GITRQGLAKMKESVLNLASFEKTADHLFDAAYYGQKDAISGVSESIIMGIPVPVGTGIFK 1327

Query: 1245 IRQRDAVPPM 1254
            +  +    P+
Sbjct: 1328 LLHKSEKDPL 1337


>gi|302308245|ref|NP_985109.2| AER252Cp [Ashbya gossypii ATCC 10895]
 gi|299789362|gb|AAS52933.2| AER252Cp [Ashbya gossypii ATCC 10895]
 gi|374108334|gb|AEY97241.1| FAER252Cp [Ashbya gossypii FDAG1]
          Length = 1459

 Score = 1135 bits (2935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1342 (46%), Positives = 843/1342 (62%), Gaps = 120/1342 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAV-----LGIIHDR 55
            +R P ++ LR+   +K ++ +C     K  +C  CG +NG+VKKA A      L IIHD 
Sbjct: 127  LRRPGIDNLRRMATLKKVLDQCK----KQRRCLHCGMLNGVVKKAAAGSGSAALKIIHDT 182

Query: 56   SKVT---------ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +           + + ++   + H+ E +  +      LNP+  L LFK+++  DCE+L
Sbjct: 183  FRWVGKKSAPEKDKWIGDWNQVLQHSPELERYMKRTMENLNPLKTLNLFKQISPQDCELL 242

Query: 107  YLSE-----RPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
             +       RPE  I   +  PP+ IRPSV+M D   SNE+D+T +L  I+ T++ ++  
Sbjct: 243  GIDSTVKAGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAG 302

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ------VARPLSGFVQRLKGKQG 214
            L +  S    +  W+ LQ+ VA YINSD    P  M         +P+ GF QRLKGKQG
Sbjct: 303  LEKGISINNMMEQWDYLQMAVAMYINSDSVN-PALMPGGNGGGKTKPIRGFCQRLKGKQG 361

Query: 215  RFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQN 274
            RFRGNLSGKRV+++GRTVISPDPNL I EVA+P R+A++LT+PE+V+ +N  KL+Q I N
Sbjct: 362  RFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNKHKLQQLIVN 421

Query: 275  GPDKYPGARMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
            G + +PGA  +   +  AR  + YG  R +LA  L+ G +V+RHLEDGDVVLFNRQPSLH
Sbjct: 422  GANVHPGANYLLKKNEEARRNLRYGD-RIKLAKNLQIGDVVERHLEDGDVVLFNRQPSLH 480

Query: 333  RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
            R+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL
Sbjct: 481  RLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 540

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
             TPK+GE ++A+TQDF+T S+LI+ KD+F+DRA F  M   M DG  + D+P PAI++P 
Sbjct: 541  LTPKSGEPIIAATQDFITGSYLISHKDSFFDRATFVQMLSMMSDGNLQFDIPPPAIMRPH 600

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTY---SNKLIRTEGDEEIRIETMCPNDGFV 509
             LWTGKQLFS+LI+P+    V +NL  K K Y    NK    E         M  NDG+V
Sbjct: 601  YLWTGKQLFSLLIKPNKKSPVIINLDAKNKVYIAPKNKAYPNE---------MSANDGYV 651

Query: 510  YFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSI 569
              R S ++SG + K+ LG+G K  ++  +LRD+G    +  MNR+AKL AR++GN GFSI
Sbjct: 652  VIRGSNILSGVMDKSVLGDGKKHSVFYTILRDFGPQEATQAMNRMAKLCARYLGNRGFSI 711

Query: 570  GIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNR 629
            GI DV P  EL   K +++   Y  C+  I  Y  GKL+ +PGC+  QTLEA I  +L++
Sbjct: 712  GISDVTPGVELKATKEEMVEIAYAKCDELIDLYKRGKLETQPGCNEEQTLEAKIGGLLSK 771

Query: 630  IREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSL 689
            +RE+ G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSL
Sbjct: 772  VREEVGDVCIRELDNLNAPLIMATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSL 831

Query: 690  PHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKA 749
            PHFP+ +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+
Sbjct: 832  PHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKS 891

Query: 750  LEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQ 809
            LEDLS QYDN+VR +   IVQF YG DG+DP NMEG + +P+NF+R              
Sbjct: 892  LEDLSCQYDNTVRTSSNGIVQFTYGGDGLDPLNMEG-NAKPVNFNRSWDHANNITYNHDD 950

Query: 810  RYLSPQQVSE-------IVEKQLAAY---------GKESCSEAFL---NSLRKFFEGQQD 850
            + + P Q+ E        +E+QL+ Y         G E+  E ++   ++ R+F++  + 
Sbjct: 951  KGMLPYQILEETNAILHPLEQQLSRYDNVGNPLAPGLEN-EELYIDQHDAEREFYQSLRT 1009

Query: 851  KLDKKIKFVEDIGWDDKSQILEEVTHKTS------------------------GITEKQL 886
             + +K + + DI    KS+ L+E+ H  +                         I+ K +
Sbjct: 1010 YMSEKARKLADI---RKSRGLKELYHAPALELQLMDLDASCPEVDVKSVNQLCKISSKLV 1066

Query: 887  EVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIK 946
              F+    S+YR  +VE GTA+GAIGA SIGEPGTQMTLKTFHFAGVASMN+T GVPRIK
Sbjct: 1067 RTFLDIAISKYRKAKVEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1126

Query: 947  EIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIA 1006
            EIIN +K ISTPII A L  +D+E AARVVKGR+EKTLL  V   I+ V    ++ + + 
Sbjct: 1127 EIINASKVISTPIINATLVNDDDERAARVVKGRVEKTLLSDVIFYIQDVYRDNMSFLQVK 1186

Query: 1007 LDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEI--FPPVDKSK----- 1059
            +D+ TI+   L +  + +  +I   PK+K+    + ++   K+ I     +DK+K     
Sbjct: 1187 VDLATIEKLQLELTVEDIAIAITSAPKLKISTGDVSIVGRNKININVCNDLDKAKSISTL 1246

Query: 1060 --------IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVE 1111
                    + F++  L+  LP ++VKG+  + R VI  ++  KR+           LLVE
Sbjct: 1247 ASEPHENDVFFKMQHLRRALPGIVVKGLPDISRAVINIRDDGKRE-----------LLVE 1295

Query: 1112 GTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMM 1171
            G GL+ VM  +G+ G KTK+NH  EV   LGIEAAR  IIDEI+ TM  HGMS+D RH+ 
Sbjct: 1296 GYGLRDVMTTDGVVGYKTKTNHFLEVYDVLGIEAARTSIIDEIDYTMSNHGMSVDPRHIQ 1355

Query: 1172 LLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECII 1231
            LL D+MT++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSECII
Sbjct: 1356 LLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECII 1415

Query: 1232 MGIPMPLGTGILKIRQRDAVPP 1253
            +G  M +GTG  K+ +   + P
Sbjct: 1416 LGQTMTIGTGSFKVVKGTNISP 1437


>gi|340519695|gb|EGR49933.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1465

 Score = 1133 bits (2930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/1327 (45%), Positives = 835/1327 (62%), Gaps = 112/1327 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKV-- 58
            +R P ++ +R+T + K I ++C     K  +CP CG ING ++K V VL + HD+     
Sbjct: 136  LRRPGLDNIRRTQICKRINEQCR----KCRQCPYCGEINGQIRK-VGVLKLTHDKFSAYK 190

Query: 59   ---------TESLQEFASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCEV 105
                      ES   F ++    K+    ++     A   LNP+ VL  FK +T TDCE+
Sbjct: 191  KSTSQKKLPPESKIAFDASFDEAKKLNPDLDKHLARAMEDLNPLWVLNHFKMITATDCEL 250

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L     RPE  I   +  PP+ IRPSV  +G+ S E+D+T +L  I+  +  ++  L 
Sbjct: 251  LGLDPTEGRPEMFIWQFVPAPPVCIRPSVAQEGA-STEDDLTAKLAEIVYISGLIRTALN 309

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            +       +  WE LQ+++A Y+NSDV G+       + + GF QRLKGKQGRFRGNLSG
Sbjct: 310  KGKPMQTIMEQWEYLQLQIAMYVNSDVPGLN-QPGFGKSIRGFCQRLKGKQGRFRGNLSG 368

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I +VA+P  +A+ LT+PERV  HN+EKLRQCI NGP  +PGA
Sbjct: 369  KRVDFSGRTVISPDPNLGINQVAVPQLVAKNLTFPERVQSHNMEKLRQCILNGPKVWPGA 428

Query: 283  RMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
              +   +G  +  + +G  R  +A +L+ G +V+RHLEDGDVVLFNRQPSLH++SIM H 
Sbjct: 429  NHVIKDNGNWKQDLQFGD-RALVARDLRIGDVVERHLEDGDVVLFNRQPSLHKLSIMSHL 487

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
            A+I PWRT R NE VC PYNADFDGDEMN+HVPQ+EEAR EA+ LMGV+NNL TPKNGE 
Sbjct: 488  AKIRPWRTFRLNECVCGPYNADFDGDEMNLHVPQSEEARAEAITLMGVKNNLATPKNGEP 547

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A+TQDF+T+S+L++ KD FY+R AF+ +C +M DG+  +DLP P+I+KP  LWTGKQ+
Sbjct: 548  IIAATQDFITASYLLSSKDRFYNRKAFTYICTHMVDGVTHIDLPPPSIIKPEALWTGKQI 607

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            F+VL+RP+    V VNL  + + YS +          +   M PND ++  RNSE++ G+
Sbjct: 608  FNVLMRPNKQSPVLVNLDARCREYSAR--------PGQCPDMDPNDAWLVIRNSEVMCGR 659

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + K+ +G+G K+ ++ ++LRD+G       MNRL KL AR +GN GFS+G+ DV P  EL
Sbjct: 660  MDKSIIGSGKKNSVFYIILRDFGPDHAVYAMNRLTKLCARQLGNQGFSLGVGDVFPSTEL 719

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
            +  + +L+ + Y+  +  I+ + +GKL+   GCD  QTLE  I+ IL+++R+ AG+ C+ 
Sbjct: 720  TKSRDRLVQDAYDKSDALIETFKQGKLEKAAGCDMEQTLEISISGILSKVRQQAGQQCVD 779

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
            +L   N+PLIM+  GSKG  IN++QMVACVGQQ +GG+R P+GF DRSLPHF + A++PA
Sbjct: 780  ALSRNNAPLIMANSGSKGLHINVAQMVACVGQQIIGGQRVPDGFQDRSLPHFHKNARQPA 839

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSFYSGL  TEFFFH + GREGL+DTAVKTA+TGYMSRRL+K+LEDLS QYDN+
Sbjct: 840  SKGFVRNSFYSGLFPTEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLSTQYDNT 899

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEI 820
            VR + G IVQF +G D +DP +MEG S  P+ FDR     ++T     +R L P +V E+
Sbjct: 900  VRTSSGTIVQFQFGADKLDPVDMEG-SAVPVQFDRTWTHAESTTWDNNERSLLPHEVLEV 958

Query: 821  VEKQL-------------------------AAYGKESCSEAFLNSLRKFFEGQQDKLDKK 855
                L                          A  +   +  F++++  +   +  K+ K 
Sbjct: 959  CTSMLDKEKLRYKRRRLVDNALLDYSDPTDEALDEHESARGFIDTIYSYVAERAQKMSKA 1018

Query: 856  IKFVEDIGWDDKSQILEEVTH-------------KTSGITEKQLEVFIQTCFSRYRVKRV 902
             + V   G D      E++++             + S I+   L+ F++ C  RY    V
Sbjct: 1019 RELV---GLDPDPSHDEDLSNASPDLKARLARVERVSKISLTTLQRFVKECLERYHKAHV 1075

Query: 903  EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITA 962
            E G A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT 
Sbjct: 1076 EPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKNISTPVITC 1135

Query: 963  ELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINAD 1022
             L  +    AAR+VKGRIEKT +  V K+I+    S   +IV+ +DME +Q+ HL I   
Sbjct: 1136 PLLNDKQIEAARIVKGRIEKTYVIDVLKAIEDEWVSDRGTIVLYIDMEALQNMHLGIGIV 1195

Query: 1023 IVKESIVQTPKIKLKQQHIKV-LDFRKLEIF-----PPVDK---------------SKIH 1061
             + E+I++  K+K++   + V  ++ K+ +      P   K               S   
Sbjct: 1196 DIAEAILRFKKLKIQPTDVSVGPNYIKIYVLNSWVDPDAAKKRQRSQGSLTMTEEASDFL 1255

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
              +  L+ +LP V + G     R +I           +  E+ ++ +LVEG GL+A M  
Sbjct: 1256 LRVNHLRRMLPKVPISGYNEATRAII-----------QTSEQNEHTVLVEGYGLRACMTT 1304

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
            EG+ G K++SN + E +  LGIEAAR  I+DEI+  M   GM ID RH+ LLAD+MTF+G
Sbjct: 1305 EGVIGTKSRSNSVMEARDVLGIEAARTTIVDEISSVMA--GMDIDPRHIQLLADVMTFKG 1362

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVL LASFEKT DHLF A+   + DRIEGVSECIIMG  M +GTG
Sbjct: 1363 EVLGITRFGLSKMRESVLQLASFEKTPDHLFEAAAGMKTDRIEGVSECIIMGQTMSVGTG 1422

Query: 1242 ILKIRQR 1248
              ++ +R
Sbjct: 1423 SFQVVRR 1429


>gi|367004166|ref|XP_003686816.1| hypothetical protein TPHA_0H01760 [Tetrapisispora phaffii CBS 4417]
 gi|357525118|emb|CCE64382.1| hypothetical protein TPHA_0H01760 [Tetrapisispora phaffii CBS 4417]
          Length = 1459

 Score = 1133 bits (2930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/1336 (46%), Positives = 843/1336 (63%), Gaps = 109/1336 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHD- 54
            +R P ++ L++  ++K I+ +C     K  +C  CG +NG+VK+A      A L IIHD 
Sbjct: 127  LRKPDIDNLKRMSILKKILDQCK----KQRRCLECGDLNGVVKRAATGSGSASLKIIHDT 182

Query: 55   -----RSKVTES---LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
                 +  V E    + ++   +T+  E +  +   T  LNP+  L LFK++ + DCE+L
Sbjct: 183  FRWVGKKNVPEKDKWIGDWNQVLTNNPELEKFIKRCTDDLNPLKTLNLFKQIKNEDCELL 242

Query: 107  YL-----SERPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
             +     S RPE  I   +  PP+ IRPSV+M D S SNE+D+T +L  I+ T++ ++  
Sbjct: 243  GIDSTVASGRPETYIWRYLPAPPVCIRPSVMMQDSSASNEDDLTVKLTEIVWTSSLIKAG 302

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSDVRGV---PFSM--QVARPLSGFVQRLKGKQGR 215
            L +  S    +  W+ LQ+ VA YINSD   +   P S     A+P+ GF QRLKGKQGR
Sbjct: 303  LEKGISINNMMEHWDYLQLSVAMYINSDSVNLLVMPGSNGGTKAKPIRGFCQRLKGKQGR 362

Query: 216  FRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNG 275
            FRGNLSGKRV+++GRTVISPDPNL I EVA+P  +A++LTYPE+V+ +N  KL++ + NG
Sbjct: 363  FRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPELVAKVLTYPEKVTRYNKTKLQKLVMNG 422

Query: 276  PDKYPGARMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHR 333
            P+ +PGA  +   +  AR  + YG  R++LA +L+ G IV+RHLEDGD+VLFNRQPSLHR
Sbjct: 423  PNVHPGANYLLKSNEEARRNLRYGN-RDKLAKQLRIGDIVERHLEDGDIVLFNRQPSLHR 481

Query: 334  MSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHV-PQTEEARTEALLLMGVQNNL 392
            +SI+ H A+I PWRT R NE VC PYNADFDGDEMN+    QTEEAR EA+ LMGV+NNL
Sbjct: 482  LSILSHFAKIRPWRTFRLNECVCTPYNADFDGDEMNLLCYQQTEEARAEAINLMGVKNNL 541

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
             TPK+GE ++A+TQDF+T S+LI+ KD+F+DRA  + +   M D   + D+P PAI KP 
Sbjct: 542  LTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLTQLLSMMSDANLKFDIPPPAIFKPQ 601

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTY---SNKLIRTEGDEEIRIETMCPNDGFV 509
             LWTGKQ+FS+LI+P+    V +NL  K K Y    NK   +E         M PNDG+V
Sbjct: 602  CLWTGKQIFSLLIKPNKESPVVINLDAKNKVYIPPQNKSWPSE---------MSPNDGYV 652

Query: 510  YFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSI 569
              R SE++SG + K+ LG+G K  ++  +LRDYG   ++  MNR+AKL AR++GN GFSI
Sbjct: 653  IIRGSEILSGVMDKSVLGDGKKHSVFYTILRDYGPQESANAMNRMAKLCARYLGNRGFSI 712

Query: 570  GIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNR 629
            GI DV P +EL  KK  L+   Y+ C+  I +YN+G+L+ +PGC+  QTLEA I  +L++
Sbjct: 713  GISDVTPGEELKLKKEDLVEIAYKKCDELIIQYNKGELETQPGCNEEQTLEAKIGGLLSK 772

Query: 630  IREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSL 689
            +RE+ G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSL
Sbjct: 773  VREEVGDVCINELDNLNAPLIMATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSL 832

Query: 690  PHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKA 749
            PHF + +K P +KGFV NSF++GL+  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+
Sbjct: 833  PHFEKNSKTPQSKGFVRNSFFTGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKS 892

Query: 750  LEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQ 809
            LEDLS QYDN++R +   IVQF YG DG+DP +MEG + +P+NF R              
Sbjct: 893  LEDLSCQYDNTIRTSSNGIVQFTYGGDGLDPLDMEG-NAKPVNFKRTWDHASNITFDFNA 951

Query: 810  RYLSPQQ-------VSEIVEKQLAAY---GKE---------------SCSEAFLNSLRKF 844
            + L P Q       + + +E  L  Y   GK                     F  S+R++
Sbjct: 952  KGLLPYQIIKQTNLILQPLENALVRYNNVGKPLSKKDYHKDEYVDQLDAKRDFYASIREY 1011

Query: 845  FEGQQDKLDKKIKF-------------VEDIGWDDK-SQILEEVTHKTSGITEKQLEVFI 890
               + ++L K  K              ++ I +D+     + EV  K   I+E  ++ F+
Sbjct: 1012 MVEKAEQLAKIRKARSLKELISEPAEELQHIDFDENIPSNVREVVDKLCKISEANVKKFL 1071

Query: 891  QTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN 950
            +   S+Y   +VE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN
Sbjct: 1072 EIAISKYHRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 1131

Query: 951  GAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDME 1010
             +K ISTPII A L  + +  AARVVKGRIEKTLL  VA  I+ V       I I +D+ 
Sbjct: 1132 ASKTISTPIIKAVLVNDSDRRAARVVKGRIEKTLLSDVAYYIEDVYRDNRTFIRIKIDLS 1191

Query: 1011 TIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL--DFRKLEIFPPVDKS---------- 1058
            TI+   L +  + +  +I + PK+K+   +I ++  D   +++F    KS          
Sbjct: 1192 TIEKLQLELTIEDIAIAISKAPKLKIDSSNIHIVGNDKIAIDVFEEASKSISTSLKESSE 1251

Query: 1059 -KIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQA 1117
              + +++ +L+  LP V+VKG+  + R VI  K+  K +           LLVEG GL+ 
Sbjct: 1252 NTVFYKMQTLRRALPDVVVKGLADISRAVINIKDDSKTE-----------LLVEGYGLRD 1300

Query: 1118 VMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLM 1177
            VM  +G+ G KT +NHI E+   LGIEAAR  I+ EI+ TM  HGMS+D RH+ LL D+M
Sbjct: 1301 VMCTDGVIGTKTSTNHILEIFNVLGIEAARSSIVGEIDYTMSNHGMSVDPRHIQLLGDVM 1360

Query: 1178 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP 1237
            TF+GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D ++GVSECII+G  M 
Sbjct: 1361 TFKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDEVKGVSECIILGQTMS 1420

Query: 1238 LGTGILKIRQRDAVPP 1253
            +GTG   + +   V P
Sbjct: 1421 IGTGSFNVVKHTVVSP 1436


>gi|255717220|ref|XP_002554891.1| KLTH0F16236p [Lachancea thermotolerans]
 gi|238936274|emb|CAR24454.1| KLTH0F16236p [Lachancea thermotolerans CBS 6340]
          Length = 1460

 Score = 1133 bits (2930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1327 (45%), Positives = 842/1327 (63%), Gaps = 106/1327 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA-----VLGIIHDR 55
            +R P ++ LR+  ++K +V +C     K  +C RCG +NG+VKKA A      L I+HD 
Sbjct: 127  LRRPGIDNLRRMGILKKVVDQCK----KQRRCLRCGSLNGVVKKAAAGSGSASLKILHDT 182

Query: 56   SKVT---------ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +           + + ++ + + H  E +  V      LNP+  L LFK++   DCE+L
Sbjct: 183  FRWVGKKSAPEKDKWVGDWKTVLAHNPELERYVKKCMDDLNPLKTLNLFKQVAPEDCELL 242

Query: 107  YL-----SERPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
             +     S RPE  I   +  PP+ IRPSV+M D   SNE+D+T +L  I+ T++ ++  
Sbjct: 243  GIDSTVKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAG 302

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ------VARPLSGFVQRLKGKQG 214
            L +  S    +  W+ LQ+ VA YINSD    P  M         +P+ GF QRLKGKQG
Sbjct: 303  LEKGISINNMMEQWDYLQLAVAMYINSDSVN-PAMMPGGSTGGKTKPIRGFCQRLKGKQG 361

Query: 215  RFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQN 274
            RFRGNLSGKRV+++GRTV+SPDPNL I EVA+P R+A++LTYPE V+ +N +KL+Q + N
Sbjct: 362  RFRGNLSGKRVDFSGRTVVSPDPNLSIDEVAVPDRVAKVLTYPEMVTRYNKQKLQQLVIN 421

Query: 275  GPDKYPGARMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
            GP+++PGA  +   D  AR  + YG  R +LA  L+ G +V+RHLEDGDVVLFNRQPSLH
Sbjct: 422  GPNEHPGANYLLKKDEEARRNLRYGD-RMKLARNLQYGDVVERHLEDGDVVLFNRQPSLH 480

Query: 333  RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
            R+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL
Sbjct: 481  RLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 540

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
             TPK+GE ++A+TQDF+T S+LI+ KD+F+ RA F  +   M DG  + D+P P+I+KP 
Sbjct: 541  LTPKSGEPIIAATQDFITGSYLISHKDSFFSRAEFVQLLSMMSDGNLQFDIPPPSIMKPY 600

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFR 512
             +WTGKQ+FS+LIRP+    V +NL  K K Y     ++  +E      M  NDG+V  R
Sbjct: 601  YMWTGKQVFSLLIRPNKESPVVINLDAKNKVYIPPKDKSLPNE------MSINDGYVVIR 654

Query: 513  NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
             S+++SG + K+ LG+G K  ++  +LRD+G    +  MNR+AKL AR++GN GFSIGI+
Sbjct: 655  GSKILSGVMDKSVLGDGKKHSVFYTILRDFGPQEAAFAMNRMAKLCARFLGNRGFSIGIN 714

Query: 573  DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
            DV P  EL +KK  ++ + Y  C+  I  +N+GKL+ +PGC+  QTLEA I  +L+++RE
Sbjct: 715  DVTPGFELKNKKEIMVEDAYAKCDALIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVRE 774

Query: 633  DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
            + G+ C+  L   NS LIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF
Sbjct: 775  EVGEVCIKELDNLNSCLIMANCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 834

Query: 693  PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
             + +K P +KGFV NSF+SGLS  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LED
Sbjct: 835  LKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 894

Query: 753  LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYL 812
            LS QYDN++R +   IVQF YG DG+DP +MEG + +P+NF R              + L
Sbjct: 895  LSCQYDNTIRTSSNGIVQFTYGGDGLDPIDMEG-NAQPVNFSRSWEHANNVTFNHVDKPL 953

Query: 813  SPQQVSE-------IVEKQLAAY------------------GKESCSEAFLNSLRKFFEG 847
             P Q+ +        +E++L  Y                   ++     F  SLR +   
Sbjct: 954  LPYQIMQQTNGVLKPLEEKLVRYDNLGNELDPSLQDRVEYIDQDDAERNFYKSLRDYMYE 1013

Query: 848  QQDKL-----DKKIK-FVEDIGWDDKSQILEEVTHKTS--------GITEKQLEVFIQTC 893
            +   L      K +K F+++   + ++  L+E    ++         I+ K +  F++  
Sbjct: 1014 KASHLANIRAHKGLKEFLDEPAAELQAMDLDEGAPASALASVDQLCKISSKLVLKFLEIA 1073

Query: 894  FSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
              +Y   +VE GTA+GA+GA SIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K
Sbjct: 1074 IFKYHKAKVEPGTAVGAVGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASK 1133

Query: 954  RISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
             ISTPII A L  N++E AARVVKGRIEKTLL  VA  I+ V    ++ + + +D+ TI+
Sbjct: 1134 VISTPIINAVLVNNNDERAARVVKGRIEKTLLSDVAFYIQDVYKDNMSFLQVKVDLGTIE 1193

Query: 1014 DAHLCINADIVKESIVQTPKIKLKQQHIKVL--DFRKLEIFPPVDKSK------------ 1059
               L +  + +  +I +  K+K+    + ++  D   + ++P + K K            
Sbjct: 1194 KLQLELTVEDIAVAITRAAKLKIAASDVSIMGKDKVNINVYPEMAKLKSISTSAKEPVEN 1253

Query: 1060 -IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
             + + +  L+  LP ++VKG+  + R VI         +K++G ++   LLVEG GL+ V
Sbjct: 1254 ELFYRMQHLRRALPGIVVKGLPDIARAVI--------NIKDDGSRE---LLVEGYGLREV 1302

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            M  +G+ G KTK+NHI EV   LGIEAAR  I+ EI+ TM  HGMS+D RH+ LL D+MT
Sbjct: 1303 MTTDGVIGMKTKTNHILEVFSVLGIEAARTSIVGEIDYTMSNHGMSVDPRHVQLLGDVMT 1362

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
            ++GE+LGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSECII+G  M +
Sbjct: 1363 YKGEILGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSI 1422

Query: 1239 GTGILKI 1245
            GTG  K+
Sbjct: 1423 GTGAFKV 1429


>gi|238504894|ref|XP_002383676.1| DNA-directed RNA polymerase III largest subunit, putative
            [Aspergillus flavus NRRL3357]
 gi|220689790|gb|EED46140.1| DNA-directed RNA polymerase III largest subunit, putative
            [Aspergillus flavus NRRL3357]
          Length = 1436

 Score = 1132 bits (2928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/1296 (47%), Positives = 837/1296 (64%), Gaps = 80/1296 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKV- 58
            MR P ++ LR+  + K I ++C     K   C RCG  NG+VKKA  + L I HD+ +  
Sbjct: 138  MRRPGLDNLRRLQIAKRINERCR----KTRNCDRCGATNGVVKKAGTSALKITHDKFRAF 193

Query: 59   --TESLQE------------FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
              + S+++            F  A +H  E +     A   +N + VL LFKR++DTDCE
Sbjct: 194  NASTSMKKIPPPSKIVFDRSFEEARSHNPEVEKHHKKAQDDMNALRVLNLFKRISDTDCE 253

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L     RPE  +   I  PP+ IRPSV  D S S E+D+T +L  I+Q+N +L+  L
Sbjct: 254  LLGLDPKEARPEMFLWQYIPAPPVCIRPSVGQDAS-STEDDLTAKLGDIVQSNINLKNAL 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
            ++       +  W+ +Q+++A YINSDV G+     + +P+ GFVQRLKGKQGRFRGNLS
Sbjct: 313  LKGAPVQTIMECWDYMQLQIAVYINSDVPGLN-KADLGKPIRGFVQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL++ EVA+P  +A+ +TYPE V+ +N EKL+Q ++NG  K+PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 431

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +     T +    YG   N +A +L+ G +V+RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYLVKKGSTFKTFLKYGSL-NMIADQLQEGDVVERHIEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491  FAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++++ QDF++++++++ KD F+DR +F+ +C YM     R DLP PA+LKP  LWTGKQ
Sbjct: 551  PIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPETRFDLPPPAVLKPQMLWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F++L+RP+ +  V VNL    + Y       +  ++ R + + P DG++  RNSE++ G
Sbjct: 611  VFNILMRPNKDDPVMVNLDAACREY-------KPPKDGRPKDLDPKDGWLVIRNSEVMCG 663

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + KAT+G+G KD ++ V+LRD+G  A +  MNRL++LSARW  N GFSIGI DV P ++
Sbjct: 664  VMDKATIGSGKKDNVFYVMLRDFGPPAAAEGMNRLSRLSARWFTNMGFSIGITDVYPSEK 723

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K  L+   Y  C+  I +Y  G L+  PGCD  QT+E  ++ IL+++R+ AG  C+
Sbjct: 724  LLQSKHDLVETAYAQCDEVIAQYKAGTLETFPGCDELQTMENKLSGILSKVRQQAGDECI 783

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN+SQMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P
Sbjct: 784  AQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQP 843

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             +KGFV NSF+SGL   EF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD+
Sbjct: 844  PSKGFVRNSFFSGLEPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDD 903

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+ G IVQF YGDD +DP +MEGK+ +P++FDR  +  +AT     +R L P ++ E
Sbjct: 904  TVRNSSGHIVQFQYGDDKLDPVDMEGKA-KPVHFDRTFIHSEATTYDNDERSLQPAEIME 962

Query: 820  IVEKQLAAYGKESCSEAFLN-----------------SLRKFFEGQQD----KLDKKIKF 858
            + E+ L+    +   +  L+                 S R F E  Q     K DK I  
Sbjct: 963  VCEEMLSKERAKLVRKDLLDVELGYMDRSNHGVDQFESARDFLESIQQYVSTKADKLISR 1022

Query: 859  VEDIG-WDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIG 917
              DI   D++SQ  + + H T  +TEK L  FI  C  +Y+  +VE G A+GA+GAQSIG
Sbjct: 1023 GGDIDPSDERSQ--QGLNH-TGKLTEKTLRTFISACLMKYKKAQVEPGHAVGAVGAQSIG 1079

Query: 918  EPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVK 977
            EPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+++ EL   DN  AAR+VK
Sbjct: 1080 EPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVVSCELVTKDNVIAARIVK 1139

Query: 978  GRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCIN-----ADIVKESIVQTP 1032
            GRIEKT L  +   ++   T + A I + ++ +TIQD  L +      A I      ++ 
Sbjct: 1140 GRIEKTYLRDITHYVRETWTGKEAYITVKINWKTIQDLALELKIQDILAAIKNHRRFKSD 1199

Query: 1033 KIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEK 1092
             +K + Q   +  +   EI      +     L  LK +LP + V G     R +I     
Sbjct: 1200 DLKFRCQRSHIHIYMDTEI--AATSADPFLRLKHLKRLLPDIQVLGHPQAYRAII----- 1252

Query: 1093 EKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIID 1152
                 + +       LLVEG GL+A M   G+DG +T +N++ E+++ LGIEAAR  I+ 
Sbjct: 1253 -----RTDDTSTTNTLLVEGYGLRACMNTIGVDGLRTSTNNVMEMREVLGIEAARTTIVR 1307

Query: 1153 EINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLF 1212
            EI+E MK   M ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LASFEKTADHLF
Sbjct: 1308 EISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLF 1365

Query: 1213 NASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            +A   GR D +EGVSECIIMG  + LGTG +++ +R
Sbjct: 1366 DAGGAGRTDLVEGVSECIIMGKTVSLGTGAMEVVRR 1401


>gi|115390328|ref|XP_001212669.1| DNA-directed RNA polymerase III largest subunit [Aspergillus terreus
            NIH2624]
 gi|114195065|gb|EAU36765.1| DNA-directed RNA polymerase III largest subunit [Aspergillus terreus
            NIH2624]
          Length = 1450

 Score = 1132 bits (2928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/1307 (46%), Positives = 838/1307 (64%), Gaps = 97/1307 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKV- 58
            MR P ++ LR+  + K + ++C     K   C  CG ING+VKKA  + L I HD+ +  
Sbjct: 138  MRRPGLDNLRRLQIAKRVHERCK----KTKTCEACGTINGVVKKAGTSALKITHDKFRAY 193

Query: 59   -----------------TESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDT 101
                              +SL E   A  H  E +     A   LN + VL LFKR++DT
Sbjct: 194  NISTSTKKVLPPGKGAFDDSLME---ARRHNPEVEKHHKKAQDDLNALRVLNLFKRISDT 250

Query: 102  DCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQ 158
            DCE+L L+    RPE  +   I  PP+ IRPSV  D + S E+D+T +L  I+Q+N +L+
Sbjct: 251  DCELLGLNPREARPEMFLWQFIPAPPVCIRPSVGQDAA-STEDDLTAKLGDIVQSNINLK 309

Query: 159  QELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRG 218
              L++       +  W+ +Q+++A YINSDV G+     + +P+ GFVQRLKGKQGRFRG
Sbjct: 310  NSLLKGAPVHTIMECWDYMQLQIAVYINSDVPGLN-KADLGKPIRGFVQRLKGKQGRFRG 368

Query: 219  NLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDK 278
            NLSGKRV+++GRTVISPDPNL++ EVA+P  +A+ +TYPE V+ +N EKL+Q ++NG  K
Sbjct: 369  NLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKK 428

Query: 279  YPGAR--MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSI 336
            +PGA   M +  D    + YG   N +A +++ G +V+RH+EDGD+VLFNRQPSLH++SI
Sbjct: 429  WPGANYLMKKGADYKTFLKYGNL-NMIADQIQEGDVVERHIEDGDIVLFNRQPSLHKLSI 487

Query: 337  MCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPK 396
            + H A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPK
Sbjct: 488  LSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPK 547

Query: 397  NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWT 456
            NGE ++++ QDF++++++++ KD F+DR +F+ +C YM     R DLP PA+LKP  LWT
Sbjct: 548  NGEPIISAIQDFISAAYILSSKDNFFDRRSFTQLCLYMLGPETRFDLPPPAVLKPQMLWT 607

Query: 457  GKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSEL 516
            GKQ+F++L+RP+ +  V VNL    + +          ++ R + + P DG++  RNSE+
Sbjct: 608  GKQVFNILMRPNKDDPVLVNLDAACREFKQP-------KDGRPKDLDPKDGWLVIRNSEM 660

Query: 517  ISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQP 576
            + G + K+T+G+G KD ++ ++LRDYG  A +  MNRL++LSARW  N GFSIGI DV P
Sbjct: 661  MCGVMDKSTIGSGKKDNVFYIMLRDYGPAAAAEGMNRLSRLSARWFTNMGFSIGITDVYP 720

Query: 577  KKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGK 636
             ++L   K  L+   Y  C+  I +Y  G L+  PGCD  QT+E  ++ IL+++R+ AG 
Sbjct: 721  SQKLLQSKHDLVETAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQQAGD 780

Query: 637  ACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKA 696
             C+  L   NSPLIM+  GSKGS IN+SQMVA VGQQ +GG+R  +GF DR+LPHFP+ A
Sbjct: 781  ECIAQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNA 840

Query: 697  KEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
            ++P +KGFV NSF+SGL  TEF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +
Sbjct: 841  RQPPSKGFVRNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSK 900

Query: 757  YDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQ 816
            YD++VRN+ G IVQF YGDD +DP +MEGK+ +P++FDR  +  + T     +R L P +
Sbjct: 901  YDDTVRNSSGSIVQFQYGDDKLDPVDMEGKA-KPVHFDRTFIHSETTTYDNDERSLLPHE 959

Query: 817  VSEIVEKQLAA----------------------YGKESCSEA--FLNSLRKFFEGQQDKL 852
            + E+ E+ L+                       +G +    A  FL S++++ + + D+L
Sbjct: 960  IMEVCEEMLSKERAKLVRKDLMGNELGYMDRSDHGIDQYESARDFLESIQQYVQTKADRL 1019

Query: 853  DKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIG 912
               I    DI  +D+    ++  + T  +TE  L  FI  C  +Y+  +VE G A+GA+G
Sbjct: 1020 ---ISRGGDIDPNDERS--QKGLNHTGKLTETTLRTFINACLMKYKKAQVEPGHAVGAVG 1074

Query: 913  AQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENA 972
            AQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP++  EL   DN  A
Sbjct: 1075 AQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVVACELVTKDNIIA 1134

Query: 973  ARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTP 1032
            AR+VKGRIEKT L  +   ++   T + A I + ++ +TIQD  L +  + +  +I    
Sbjct: 1135 ARIVKGRIEKTYLRDIIHYVRETWTGKEAFITVKINWKTIQDLALELKINNILAAIKNHK 1194

Query: 1033 KIK---LKQQHIKVLDFRKLEIFP----PVDKSKI-------HFELYSLKNVLPMVIVKG 1078
            + K   LK +H +      +++ P     + K++I          L  LK +LP + V G
Sbjct: 1195 RFKADDLKFRHSRSHIHIYMDLDPSSKASLSKTEIAATSADPFLRLKHLKRMLPDIQVLG 1254

Query: 1079 IKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQ 1138
                 R +I   E                LLVEG GL+  M   G+DG  T +N++ E++
Sbjct: 1255 HPQAYRAIIRTDETSTTNT----------LLVEGYGLRECMTTLGVDGLHTSTNNVMEMR 1304

Query: 1139 QTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSV 1198
            + LGIEAAR+ I+ EI+E MK   M ID RHM LLAD+MT++GEVLGITRFG+ KM  SV
Sbjct: 1305 EVLGIEAARVTIVQEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSV 1362

Query: 1199 LMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            L LASFEKTADHLF+A   GR D IEGVSECIIMG  + LGTG +++
Sbjct: 1363 LQLASFEKTADHLFDAGGAGRSDMIEGVSECIIMGKTVSLGTGAMEV 1409


>gi|169780898|ref|XP_001824913.1| DNA-directed RNA polymerase III subunit RPO31 [Aspergillus oryzae
            RIB40]
 gi|83773653|dbj|BAE63780.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|391867224|gb|EIT76474.1| RNA polymerase III, large subunit [Aspergillus oryzae 3.042]
          Length = 1447

 Score = 1132 bits (2927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/1296 (46%), Positives = 836/1296 (64%), Gaps = 69/1296 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKV- 58
            MR P ++ LR+  + K I ++C     K   C RCG  NG+VKKA  + L I HD+ +  
Sbjct: 138  MRRPGLDNLRRLQIAKRINERCR----KTRNCDRCGATNGVVKKAGTSALKITHDKFRAF 193

Query: 59   --TESLQE------------FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
              + S+++            F  A +H  E +     A   +N + VL LFKR++DTDCE
Sbjct: 194  NASTSMKKIPPPSKIVFDRSFEEARSHNPEVEKHHKKAQDDMNALRVLNLFKRISDTDCE 253

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L     RPE  +   I  PP+ IRPSV  D S S E+D+T +L  I+Q+N +L+  L
Sbjct: 254  LLGLDPKEARPEMFLWQYIPAPPVCIRPSVGQDAS-STEDDLTAKLGDIVQSNINLKNAL 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
            ++       +  W+ +Q+++A YINSDV G+     + +P+ GFVQRLKGKQGRFRGNLS
Sbjct: 313  LKGAPVQTIMECWDYMQLQIAVYINSDVPGLN-KADLGKPIRGFVQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL++ EVA+P  +A+ +TYPE V+ +N EKL+Q ++NG  K+PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 431

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +     T +    YG   N +A +L+ G +V+RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYLVKKGSTFKTFLKYGSL-NMIADQLQEGDVVERHIEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491  FAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++++ QDF++++++++ KD F+DR +F+ +C YM     R DLP PA+LKP  LWTGKQ
Sbjct: 551  PIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPETRFDLPPPAVLKPQMLWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F++L+RP+ +  V VNL    + Y       +  ++ R + + P DG++  RNSE++ G
Sbjct: 611  VFNILMRPNKDDPVMVNLDAACREY-------KPPKDGRPKDLDPKDGWLVIRNSEVMCG 663

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + KAT+G+G KD ++ V+LRD+G  A +  MNRL++LSARW  N GFSIGI DV P ++
Sbjct: 664  VMDKATIGSGKKDNVFYVMLRDFGPPAAAEGMNRLSRLSARWFTNMGFSIGITDVYPSEK 723

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K  L+   Y  C+  I +Y  G L+  PGCD  QT+E  ++ IL+++R+ AG  C+
Sbjct: 724  LLQSKHDLVETAYAQCDEVIAQYKAGTLETFPGCDELQTMENKLSGILSKVRQQAGDECI 783

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN+SQMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P
Sbjct: 784  AQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQP 843

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             +KGFV NSF+SGL   EF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD+
Sbjct: 844  PSKGFVRNSFFSGLEPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDD 903

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+ G IVQF YGDD +DP +MEGK+ +P++FDR  +  +AT     +R L P ++ E
Sbjct: 904  TVRNSSGHIVQFQYGDDKLDPVDMEGKA-KPVHFDRTFIHSEATTYDNDERSLQPAEIME 962

Query: 820  IVEKQLAAYGKESCSEAFLN-----------------SLRKFFEGQQD----KLDKKIKF 858
            + E+ L+    +   +  L+                 S R F E  Q     K DK I  
Sbjct: 963  VCEEMLSKERAKLVRKDLLDVELGYMDRSNHGVDQFESARDFLESIQQYVSTKADKLISR 1022

Query: 859  VEDIG-WDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIG 917
              DI   D++SQ  + + H T  +TEK L  FI  C  +Y+  +VE G A+GA+GAQSIG
Sbjct: 1023 GGDIDPSDERSQ--QGLNH-TGKLTEKTLRTFISACLMKYKKAQVEPGHAVGAVGAQSIG 1079

Query: 918  EPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVK 977
            EPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+++ EL   DN  AAR+VK
Sbjct: 1080 EPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVVSCELVTKDNVIAARIVK 1139

Query: 978  GRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCIN-----ADIVKESIVQTP 1032
            GRIEKT L  +   ++   T + A I + ++ +TIQD  L +      A I      ++ 
Sbjct: 1140 GRIEKTYLRDITHYVRETWTGKEAYITVKINWKTIQDLALELKIQDILAAIKNHRRFKSD 1199

Query: 1033 KIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEK 1092
             +K + Q   +  +  ++    +  SK      S  +    +        +  V+   + 
Sbjct: 1200 DLKFRCQRSHIHIYMDVDPASKLGLSKTEIAATS-ADPFLRLKHLKRLLPDIQVLGHPQA 1258

Query: 1093 EKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIID 1152
             +  ++ +       LLVEG GL+A M   G+DG +T +N++ E+++ LGIEAAR  I+ 
Sbjct: 1259 YRAIIRTDDTSTTNTLLVEGYGLRACMNTIGVDGLRTSTNNVMEMREVLGIEAARTTIVR 1318

Query: 1153 EINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLF 1212
            EI+E MK   M ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LASFEKTADHLF
Sbjct: 1319 EISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLF 1376

Query: 1213 NASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            +A   GR D +EGVSECIIMG  + LGTG +++ +R
Sbjct: 1377 DAGGAGRTDLVEGVSECIIMGKTVSLGTGAMEVVRR 1412


>gi|321473486|gb|EFX84453.1| hypothetical protein DAPPUDRAFT_209553 [Daphnia pulex]
          Length = 1387

 Score = 1130 bits (2924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/1282 (47%), Positives = 833/1282 (64%), Gaps = 61/1282 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIH------- 53
            +RNP +  L K  L K I + C     K  +CP C  ING+VKK   +L I H       
Sbjct: 129  LRNPNLPYLTKKALRKQIQEVCK----KVTRCPHCNDINGVVKKC-GMLKISHEKFRSVK 183

Query: 54   -DRSKVTESLQEFASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYLSER 111
             D + +   L  + +A+   KE +  ++     +LNP+ VL LF+R+ D D + L ++ +
Sbjct: 184  KDNTIIKAELVAYDNAVQFNKEIEPMLSCGLIKMLNPIEVLHLFERIPDEDVQFLLMNPQ 243

Query: 112  ---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTN-ASLQQELVEANS 166
               P+ +I+T + VPP+ IRPSV+ D  S +NE+D+T +L  I+  N   ++  L+ ANS
Sbjct: 244  HGHPKDMILTRVPVPPVCIRPSVVSDLKSGTNEDDLTMKLTEIVFLNDVIVKHRLIGANS 303

Query: 167  AFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVE 226
            +   L  W+ LQ++ A YIN ++ G+P +MQ  +   G +QRLKGKQGRFRGNLSGKRV+
Sbjct: 304  SL-ILEAWDFLQLQSALYINGELSGIPLNMQPKKSSRGIIQRLKGKQGRFRGNLSGKRVD 362

Query: 227  YTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIR 286
            ++GRTVISPDPNL+I +V +P  +A+ILT+P RV++ NIE +R+ ++NG D +PGA  ++
Sbjct: 363  FSGRTVISPDPNLRIDQVGVPELVAKILTFPTRVNEANIELMRKLVRNGADVHPGANYLQ 422

Query: 287  YPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIM 344
                  R    YG  R  LA  LK G +++RH+ D D+VLFNRQPSLH++SIMCHRA+I+
Sbjct: 423  EKSSGMRKFLKYGN-RENLARNLKLGDLIERHMMDEDIVLFNRQPSLHKLSIMCHRAKIL 481

Query: 345  PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAS 404
            P RT RFNE VC PYNADFDGDEMN+H+PQTEEAR EA +LMG + NL TP+NGE+L+A+
Sbjct: 482  PHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEAWILMGNKYNLVTPRNGELLIAA 541

Query: 405  TQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRV-DLPTPAILKPVELWTGKQLF 461
             QDF+T ++L+T KD F+DRA    M   M  GD ++ V  LP P I KP  LW+GKQ+F
Sbjct: 542  IQDFITGAYLLTLKDAFFDRAKTCQMVASMLAGDEVNMVIKLPPPCIQKPAALWSGKQIF 601

Query: 462  SVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQL 521
            S+++RP+   R+ VNL  K K YS K            E  C NDGF+  RNSE+++G +
Sbjct: 602  SLILRPNPGDRIKVNLRTKGKEYSKK-----------NEEFCVNDGFLLVRNSEVLAGCV 650

Query: 522  GKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELS 581
             K+T+G+G+K  ++ VLLRDYG       M +L ++++ ++ N GFSIGI DV P K L 
Sbjct: 651  DKSTIGSGSKINIFYVLLRDYGEDFAIQAMWKLCRVASYYMMNRGFSIGIGDVTPGKTLL 710

Query: 582  DKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGS 641
             +K  L+   Y  C+  I+    G+L   PGC+  ++LE+ I   L+ IR+ AG+ C   
Sbjct: 711  KEKQILLDSGYSKCDEYIRLLTIGQLPCLPGCNEEESLESKILKELSGIRDQAGEVCKKE 770

Query: 642  LPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAA 701
            L   NSPL+MS+ GSKGS INISQM+ACVGQQ++ G+R PNGF DRSLPHF R +K PAA
Sbjct: 771  LHPSNSPLVMSKSGSKGSYINISQMIACVGQQALNGKRVPNGFEDRSLPHFKRHSKIPAA 830

Query: 702  KGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSV 761
            KGFV+NSFYSGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD++V
Sbjct: 831  KGFVSNSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCCQYDSTV 890

Query: 762  RNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIV 821
            RN+ G I+QF+YG DG+DP  ME K   P++F R L  +KA  P   +  L   ++ +  
Sbjct: 891  RNSAGEIIQFVYGGDGLDPTYMEAKD-RPVDFQRALDHIKAASPYPDEDPLDDIELQQAF 949

Query: 822  EKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGI 881
               +     ++    F + LR F E Q     K+IK V  I +  + + L  V      I
Sbjct: 950  NTIMDTDSFKTLGIDFKHELRVFLESQV----KRIKSVRKI-FQMEGRPLHPVEKHLERI 1004

Query: 882  TEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQG 941
            T  QL  F      +Y   ++E GTA+GA+ AQSIGEPGTQMTLKTFHFAGVASMNITQG
Sbjct: 1005 TVGQLVEFCDFSKEKYERAKIEPGTAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITQG 1064

Query: 942  VPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLA 1001
            VPRIKEIIN +K ISTP+I+ +L  +D+   AR VKGRIEKT LG+V +  + V      
Sbjct: 1065 VPRIKEIINASKAISTPVISTQLLKDDDPEYARRVKGRIEKTTLGEVTEYFEEVYLPDDC 1124

Query: 1002 SIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP-PVDKSKI 1060
             ++I LDM  I+   L ++A  ++ S+  T K+K+K   + V+    + + P P  KS +
Sbjct: 1125 FLLIKLDMNRIRLLKLEVDASSIRWSLC-TGKLKIKPNFVVVVSETIITVKPAPSAKSSM 1183

Query: 1061 HFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMG 1120
            +  +  LK  LP V++KG+ TV R VI         + +  +  +Y LLVEG  ++ VM 
Sbjct: 1184 YHVMQHLKEELPKVVIKGLPTVSRAVI--------NIDDTRKPPRYYLLVEGDNMREVMA 1235

Query: 1121 AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFR 1180
              G+ G  T SN+I EV  TLGIEAA+  I  EI  TM++HGMS+D+RH+ LL+DLM+ R
Sbjct: 1236 TYGVQGSSTTSNNILEVFSTLGIEAAKATIAKEIQFTMESHGMSVDRRHVALLSDLMSCR 1295

Query: 1181 GEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
            GE+LGITR G+ KM +SVLMLASFE+T+DHLF+A+  G++D + GVSECIIMGIPM +GT
Sbjct: 1296 GEILGITRNGLAKMKESVLMLASFERTSDHLFDAAYYGQEDEVTGVSECIIMGIPMAIGT 1355

Query: 1241 GILKIRQRDAVPPMLKYGAPDP 1262
            G  K+        + K G  DP
Sbjct: 1356 GAFKL--------LYKTGKKDP 1369


>gi|350640058|gb|EHA28411.1| hypothetical protein ASPNIDRAFT_128642 [Aspergillus niger ATCC 1015]
          Length = 2063

 Score = 1130 bits (2922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/1308 (46%), Positives = 834/1308 (63%), Gaps = 99/1308 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKVT 59
            MR P ++ LR+  + K I ++C     K   C  CG +NG+VKKA  + L I HD+ +  
Sbjct: 751  MRRPGLDNLRRGQIAKRINERCR----KTRNCEACGAVNGVVKKAGTSALKITHDKFRAF 806

Query: 60   ESL---------------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
             +                + F  A T   E +     A   +N + VL LFK+++DTDCE
Sbjct: 807  NASTSVKKVPPPSKIVFDRSFDEARTSNAEVEKHYKKAQDDMNALRVLNLFKKISDTDCE 866

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP+ IRPSV  D + S E+D+T +L  I+Q+N +L+  L
Sbjct: 867  LLGLNPKEARPEMFLWQFIPAPPVCIRPSVGQDAA-STEDDLTAKLGDIVQSNINLKNAL 925

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
            ++       +  W+ +Q+++A YINSDV G+     + +P+ GFVQRLKGKQGRFRGNLS
Sbjct: 926  LKGAPVQTIMECWDYMQLQIAVYINSDVPGLN-KADLGKPIRGFVQRLKGKQGRFRGNLS 984

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL++ EVA+P  +A+ +TYPE V+ +N EKL+Q ++NG  K+PG
Sbjct: 985  GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 1044

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  I     T ++   YG   N +A +L+ G +++RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct: 1045 ANYIMKKGQTFKLFLKYGNL-NMIADQLQEGDVIERHIEDGDIVLFNRQPSLHKLSILSH 1103

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 1104 FAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 1163

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++++ QDF++++++++ KD F+DR +F+ +C YM     R DLP PA+LKP  LWTGKQ
Sbjct: 1164 PIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPQTRFDLPPPAVLKPQMLWTGKQ 1223

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F++L+RP+ +  V VNL    + +      T  D       + P D ++  RNSE++ G
Sbjct: 1224 VFNILMRPNKDDPVLVNLDAACRQFKAPKDGTPRD-------LDPKDSWLVIRNSEVMCG 1276

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K+T+G+G KD ++ ++LRDYG  A +  MNRL++LSARW  N GFSIGI DV P ++
Sbjct: 1277 VMDKSTIGSGKKDNVFYIMLRDYGPVAAAEGMNRLSRLSARWFTNMGFSIGITDVYPSEK 1336

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K  L+   Y  C+  I +Y  G L+  PGCD  QT+E  ++ IL+++R+ AG  C+
Sbjct: 1337 LLRSKHDLVETAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQQAGDECI 1396

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN+SQMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P
Sbjct: 1397 AQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQP 1456

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             +KGFV NSF+SGL  TEF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD+
Sbjct: 1457 PSKGFVRNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDD 1516

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +MEGK+ +P++FDR  +  ++T     +R L P ++ E
Sbjct: 1517 TVRNSSAAIVQFQYGDDKLDPLDMEGKA-KPVHFDRTFIHAESTTYKNDERSLLPAEIME 1575

Query: 820  IVEKQLAA----------------------YGKESCSEA--FLNSLRKFFEGQQDKLDKK 855
            I E+ L+                       +G +    A  FL S++++   + DKL   
Sbjct: 1576 ICEEMLSKERSKLVRKDLMGNELGYMDRSDHGVDQFESARDFLESIQQYVATKADKL--- 1632

Query: 856  IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQS 915
            I    DI  +D+    ++  + T  +TE+ L  FI +C  +Y+  +VEAG A+GA+GAQS
Sbjct: 1633 ISRGGDIDPNDERS--QKGLNHTGKLTERTLRTFISSCLMKYKKAQVEAGHAVGAVGAQS 1690

Query: 916  IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARV 975
            IGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP++  EL   DN  AAR+
Sbjct: 1691 IGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVVACELVTKDNIIAARI 1750

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESI------- 1028
            VKGRIEKT L  +   ++   T + A I + ++ +TIQD  L +  + +  +I       
Sbjct: 1751 VKGRIEKTYLRDIIHYVRETWTGKEAYITVKINWKTIQDLALELKIENILSAIKNHKRFK 1810

Query: 1029 VQTPKIKLKQQHIKVLDFRKLEIFPP----VDKSKI-------HFELYSLKNVLPMVIVK 1077
                K +  + HI V     +++ P     + K++I          L  LK +LP + V 
Sbjct: 1811 ADDLKFRCSRSHIHVY----MDVDPSTKANLSKTEIAHTSADPFLRLKHLKRMLPDIQVL 1866

Query: 1078 GIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEV 1137
            G     R +I   E                LLVEG GL+  M   G+DG +T +N++ E+
Sbjct: 1867 GHPQAFRAIIRTDETSTTNT----------LLVEGYGLRECMTTMGVDGLRTSTNNVMEM 1916

Query: 1138 QQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKS 1197
            +  LGIEAAR  I+ EI+E MK   M ID RHM LLAD+MT++GEVLGITRFG+ KM  S
Sbjct: 1917 RDVLGIEAARTTIVQEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDS 1974

Query: 1198 VLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            VL LASFEKTADHLF+A   GR D IEGVSECIIMG  + LGTG +++
Sbjct: 1975 VLQLASFEKTADHLFDAGGAGRSDLIEGVSECIIMGKTVSLGTGAMEV 2022


>gi|384497273|gb|EIE87764.1| hypothetical protein RO3G_12475 [Rhizopus delemar RA 99-880]
          Length = 1273

 Score = 1129 bits (2921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/1207 (48%), Positives = 792/1207 (65%), Gaps = 53/1207 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            +R P ++ L++  ++K I +KC     K   C  C  +NG+VKK V  + I HD+ ++  
Sbjct: 91   LRAPGLDNLQRNRILKQIQEKCK----KVTYCMHCNSVNGVVKK-VGPMKITHDKYRLKR 145

Query: 61   SLQE-------FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE--- 110
               E       F +A     E K  +N A   LNP+ VL LF+R++  DCE+L LSE   
Sbjct: 146  VADEAEQFRKTFDAAAASMPELKPHINKAQDDLNPLRVLRLFQRISPEDCELLGLSEEHG 205

Query: 111  RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
            RPE  I   + VPP  +RPSV+ + + SNE+D+T +L  II TNA ++  L    +    
Sbjct: 206  RPEWYIWQYLPVPPACVRPSVVQEDNTSNEDDLTAKLTEIIFTNAIIRAGLERGVTVMNL 265

Query: 171  LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
            +  WE LQ+  A YINS++ GV  +    +P  G  QRLKGKQGRFRGNLSGKRV+++GR
Sbjct: 266  MEQWEFLQLAAALYINSEMPGV-LNATSGKPTRGLCQRLKGKQGRFRGNLSGKRVDFSGR 324

Query: 231  TVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDG 290
            TVISPDPN++I +VA+P R+A++LT+PERV+ HNI KLRQ + NGP  +PGA  +   +G
Sbjct: 325  TVISPDPNMRIDQVAVPERVAKVLTFPERVNRHNIHKLRQNVINGPFVHPGANYVEKQNG 384

Query: 291  TARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 350
              R L    R ++A +L+ G +V+RHL D DVVLFNRQPSLHR+SIM H A++MPWRT R
Sbjct: 385  FKRFLKFGNRQEIAADLQIGDLVERHLSDNDVVLFNRQPSLHRLSIMAHFAKVMPWRTFR 444

Query: 351  FNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLT 410
            FNE VC+PYNADFDGDEMNMH+PQT+EA+ EA+ LMGV+NNL TP+NGE L+A+TQDF+T
Sbjct: 445  FNECVCSPYNADFDGDEMNMHLPQTQEAKAEAMELMGVKNNLVTPRNGEPLIAATQDFIT 504

Query: 411  SSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHAN 470
            +S+L++ KDTFY R  F+  C  M D   ++DLP P I KP  LWTGKQ+F+VL RP+  
Sbjct: 505  ASYLLSHKDTFYTRGEFAQACSMMCDADLKIDLPPPVIWKPQRLWTGKQVFNVLFRPNKE 564

Query: 471  MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGN 530
             +V +++  K K++    ++ EG    R+  MCPNDG++  +NSE++ G + KA +G+GN
Sbjct: 565  SKVLLSVEAKTKSF----VKQEG----RLPDMCPNDGWLVVQNSEIMCGLVDKAVVGDGN 616

Query: 531  KDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISE 590
            K+ ++ V+LRDYG    + CMNRLAKL ARW+ N GFSIGI DV P + LS  K   +  
Sbjct: 617  KNSVFYVILRDYGPIEAAKCMNRLAKLCARWLANRGFSIGISDVTPGERLSRIKFNEVET 676

Query: 591  NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLI 650
             Y  C+  I +YN G+L   PGC+  QT+E++++ IL+ +R D GK CM  L   NSP I
Sbjct: 677  AYAKCDEVIAKYNSGQLDTMPGCNEEQTMESIVSGILSAVRGDLGKVCMEELNMYNSPSI 736

Query: 651  MSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFY 710
            M++CGSKGS IN+SQMVACVGQQ + G R PNGF DRSLPHF + +K P AKGFV NSFY
Sbjct: 737  MARCGSKGSQINVSQMVACVGQQIISGTRIPNGFQDRSLPHFLKHSKTPPAKGFVRNSFY 796

Query: 711  SGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQ 770
            +GLS TEF FH + GREGLVDTAVKTA+TGYM+RRL+KA EDL+  YD SVRN+ G ++Q
Sbjct: 797  TGLSPTEFLFHAISGREGLVDTAVKTAETGYMARRLMKAFEDLTTHYDLSVRNSEGAMLQ 856

Query: 771  FLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAA-YG 829
            F YG DG+DP  +EG+ G P+ F R L  V+   P  G+R L P +++ I ++++     
Sbjct: 857  FFYGADGLDPMTIEGE-GVPVEFARNLRHVQEITPLNGERGLLPWEINYITQQEIQTEIW 915

Query: 830  KESCSEAFLNSLRKFFE----GQQDKLDKKIKFVEDIGWDDKSQI-----------LEEV 874
            +++C  +F++ + KF E    G+  K+ K       +   D+  +           ++ V
Sbjct: 916  QKNCLPSFIDMVTKFVEEKIAGRLAKIRKAHGMQSGLAMPDEDYMDIDIDEDEDEAVKTV 975

Query: 875  THKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 934
                  ITE+QL  ++  C S+Y   ++E GTA+GAIGA SIGEPGTQMTLKTFHFAGVA
Sbjct: 976  VRNLFTITERQLRDYLHVCVSKYMKAKIEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGVA 1035

Query: 935  SMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKI 994
            SMNIT GVPRIKEIIN AK ISTPIIT EL  N +  AARVVKGR+EKT LG VA  ++ 
Sbjct: 1036 SMNITLGVPRIKEIINAAKVISTPIITCELHSNQDVRAARVVKGRVEKTTLGDVAVYMEE 1095

Query: 995  VMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL--DFRKLEIF 1052
            V       I+I +D++ I    L  N   +  +I   PK+K+ Q  ++    D  ++ + 
Sbjct: 1096 VYEPNETYILIRIDLDAINRLQLETNLHQIAHAIKTAPKLKMGQLDVQTSRPDIIRVYVH 1155

Query: 1053 PPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEG 1112
               ++S +++ L +LK VL  V++ G+  V R VI+EK+         G K   +LLVEG
Sbjct: 1156 AKQEES-MYYNLKALKRVLTSVVITGLPPVVRAVISEKQ---------GGKGAKQLLVEG 1205

Query: 1113 TGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMML 1172
             GL  VM  +GI G KT SNHI EV   LGIEAAR  II+EI  TM++HGM+ID RH+ L
Sbjct: 1206 YGLLDVMTTDGIVGDKTTSNHIMEVADVLGIEAARSTIINEITMTMESHGMTIDHRHVFL 1265

Query: 1173 LADLMTF 1179
            L D+MT 
Sbjct: 1266 LGDIMTM 1272


>gi|242015075|ref|XP_002428200.1| DNA-directed RNA polymerase III largest subunit, putative [Pediculus
            humanus corporis]
 gi|212512752|gb|EEB15462.1| DNA-directed RNA polymerase III largest subunit, putative [Pediculus
            humanus corporis]
          Length = 1364

 Score = 1129 bits (2920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1272 (47%), Positives = 843/1272 (66%), Gaps = 60/1272 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            ++NPK   L +  L K I +K    A K   CP C  +NG+VKK   +L ++H++ + ++
Sbjct: 129  LQNPKFLYLARKALRKQIHEK----AKKISICPYCQSLNGVVKKC-GLLKLVHEKFRGSK 183

Query: 61   S---------LQEFASAITHTKESKAAV-NVATYILNPVNVLFLFKRMTDTDCEVLYLSE 110
            S         +Q + + + + +E ++ + +   +IL P++VL L +R+ + D  +L ++ 
Sbjct: 184  STTDALMAKHIQAYNNVLEYDRELESVIASGVAFILTPLDVLNLLERIPEDDVCLLCMNP 243

Query: 111  ---RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANS 166
                P  L++T + VPP+ +RPSVI +  S +NE+D+T +L  II  N  +Q+       
Sbjct: 244  AMVHPRDLMLTRLPVPPLCVRPSVISELKSGTNEDDLTMKLSEIIFINDVIQKHRQSGAK 303

Query: 167  AFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVE 226
                   W+ LQ+  A YINS+  G+P SMQ  +   G VQRLKGKQGRFRGNLSGKRV+
Sbjct: 304  VHMINEDWDFLQLHCALYINSETTGIPLSMQPKKATRGLVQRLKGKQGRFRGNLSGKRVD 363

Query: 227  YTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIR 286
            ++ RTVISPDPNL+I +V +P  +A+ILT+PE+V+  NI  LR+ ++NGPD +PGA  + 
Sbjct: 364  FSSRTVISPDPNLQIDQVGVPEHVAKILTFPEKVNRANIFLLRELVRNGPDTHPGANFVE 423

Query: 287  YPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIM 344
              +G ++  + YG  R++++ ELK G +V+RHL D D+VLFNRQPSLH++SIM HRA+++
Sbjct: 424  DRNGNSKRYLRYGN-RSKISSELKFGDVVERHLIDDDIVLFNRQPSLHKLSIMAHRAKVL 482

Query: 345  PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAS 404
              RT RFNE VC PYNADFDGDEMN+H+PQT EA+ EAL+LM  + NL TP+NGE+L+A+
Sbjct: 483  KHRTFRFNECVCTPYNADFDGDEMNLHLPQTLEAKAEALVLMSNKANLATPRNGELLIAA 542

Query: 405  TQDFLTSSFLITRKDTFYDRA-AFSLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLF 461
            TQDF+T ++L+T+K+TF+ +A A  L+ C +   D    +DLP PAI+KP+ LWT KQ+F
Sbjct: 543  TQDFITGAYLLTQKNTFFTQAKANWLLACILAGKDANLHIDLPPPAIIKPMRLWTAKQIF 602

Query: 462  SVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQL 521
            SV+++P+   ++  NL  K K Y+++            E MC ND FV  RNS L++G +
Sbjct: 603  SVILKPNKKCKIVCNLRTKGKAYTSR------------EEMCVNDSFVLIRNSVLLAGTM 650

Query: 522  GKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELS 581
             K TLG+G+KD +  +LLRD+G  A +  M RLA++++ ++ N GFSIG+ DV P   L 
Sbjct: 651  DKGTLGSGSKDNILYILLRDWGEDAAATVMWRLARIASWFLMNRGFSIGLGDVTPGVGLL 710

Query: 582  DKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGS 641
              K KL++  Y  C   IK    GKL  +PGC   +TLEAVI   L+ IR+ AGKAC+  
Sbjct: 711  RAKEKLLNAGYSKCVEYIKAMEAGKLPCQPGCTIDETLEAVILKELSVIRDHAGKACLQE 770

Query: 642  LPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAA 701
            L   NSPLIM+ CGSKGS INISQM+ACVGQQ++ G+R P+ F +R+LP F R  K PAA
Sbjct: 771  LHSSNSPLIMALCGSKGSFINISQMIACVGQQAISGKRVPDKFENRALPQFERYTKIPAA 830

Query: 702  KGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSV 761
            KGFV NSFYS L+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+KALEDL +QYD +V
Sbjct: 831  KGFVENSFYSSLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKALEDLCVQYDMTV 890

Query: 762  RNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIV 821
            RN+ G I+QF YG DG+DP  MEGK   P+NF R L  ++A  P   +  L    V +  
Sbjct: 891  RNSMGEIIQFNYGGDGLDPTYMEGKDC-PVNFQRTLDHIRAKYPYREEEALDSISVEKAT 949

Query: 822  EKQLAAYGKESCSEAFLNSLRKFFEGQQDKLD-KKIKFVEDIGWDDK--SQILEEVTHKT 878
            ++ L       C + F   L+ F  G   K+   + KF    G++++  S I + +  + 
Sbjct: 950  DELLNTEEFGVCDDVFKFDLKNFMSGIVRKMALTRQKF----GYNERNLSDIPKAII-QI 1004

Query: 879  SGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNI 938
              +T  Q+  F Q C  +Y   +VEAGTA+GA+ AQSIGEPGTQMTLKTFHFAGVASMNI
Sbjct: 1005 ERLTVSQIVEFFQICRKKYLRAKVEAGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNI 1064

Query: 939  TQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            TQGVPRIKEIIN +K+ISTPIITA LE + +   AR VKGRIEKT LG++++ I+ V   
Sbjct: 1065 TQGVPRIKEIINASKKISTPIITAYLENDSDAEFARRVKGRIEKTTLGEISEYIEEVFLP 1124

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKS 1058
                I++ LD++ I+   L ++A+ +K ++  T ++K+   +++V+    L++ P   K+
Sbjct: 1125 DDFFIIVKLDVDRIKLLKLEVDANSIKYTLC-TARLKV---NVEVVSDTILKVTPIKTKN 1180

Query: 1059 --KIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQ 1116
              +I++ L SLK  LP +++KG+  V R VI   + +           KY+L VEG  L 
Sbjct: 1181 ADRINYVLQSLKKSLPNIVIKGLSAVNRAVIHHDDSKG--------GTKYKLFVEGYNLG 1232

Query: 1117 AVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADL 1176
             VM   G+ G KT SN+IFEV   LGIEAAR  II EI   M+ HGMSID+RH+MLLADL
Sbjct: 1233 EVMATNGVLGTKTTSNNIFEVFTYLGIEAARQTIISEIKMVMENHGMSIDRRHIMLLADL 1292

Query: 1177 MTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPM 1236
            MT RGEVLGITR G+ KM +SVL LASFE+TADHLF+A+  G+ D I GVSE IIMG+P+
Sbjct: 1293 MTSRGEVLGITRHGLVKMKESVLNLASFERTADHLFDAAYYGQTDAITGVSESIIMGLPV 1352

Query: 1237 PLGTGILKIRQR 1248
             +GTG+ K+ +R
Sbjct: 1353 SVGTGLFKLEKR 1364


>gi|403214358|emb|CCK68859.1| hypothetical protein KNAG_0B04240 [Kazachstania naganishii CBS 8797]
          Length = 1455

 Score = 1129 bits (2920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 615/1329 (46%), Positives = 840/1329 (63%), Gaps = 102/1329 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAV-----LGIIHD- 54
            +R P ++ LRK  ++K ++ +C     K  +C +CG +NG+VKKA A      L IIHD 
Sbjct: 127  LRRPGIDNLRKMSILKKVIDQCK----KQRRCLKCGGLNGVVKKAAAGAGTASLKIIHDT 182

Query: 55   -----RSKVTES---LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
                 +  V E    + E+   +TH  E +  V   +  LNP+  L LFK++   DCE+L
Sbjct: 183  FRWVGKKMVPEKDRWIGEWNEILTHHPELERFVKRCSDDLNPLKTLTLFKQLKSEDCELL 242

Query: 107  YL-----SERPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
             +     S RPE  I   +  PP+ IRPSV M D   SNE+D+T +L  I+ T++ ++  
Sbjct: 243  GINSTVRSGRPETYIWRYLPAPPVCIRPSVTMQDSPASNEDDLTVKLTEIVWTSSLIKAG 302

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSD------VRGVPFSMQVARPLSGFVQRLKGKQG 214
            L +  S    +  W+ LQ+ VA YINSD      + G        +P+ GF QRLKGKQG
Sbjct: 303  LAKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGASSGGGKVKPIRGFCQRLKGKQG 362

Query: 215  RFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQN 274
            RFRGNLSGKRV+++GRTVISPDPNL I EVA+P  +A++LT+PE+V+ +N  KL+Q I N
Sbjct: 363  RFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPQLVAKVLTFPEKVTRYNKRKLQQLIIN 422

Query: 275  GPDKYPGARMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
            GP  +PGA  +   +  AR  + YG  + +LA  L+ G +V+RHLEDGDVVLFNRQPSLH
Sbjct: 423  GPTVHPGANYLLKKNEEARRNLRYGD-KLKLAKNLQYGDVVERHLEDGDVVLFNRQPSLH 481

Query: 333  RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
            R+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL
Sbjct: 482  RLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 541

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
             TPK+GE ++A+TQDF+T S+LI+ KD+F+D  + + +   M D   + D+P PAI+KP 
Sbjct: 542  LTPKSGEPIIAATQDFITGSYLISHKDSFFDLGSLTQLLSMMSDAKLQFDIPPPAIMKPY 601

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFR 512
             LWTGKQ+FS+LIRP+    V +NL  K K Y     ++  +E      M  NDGFV  R
Sbjct: 602  YLWTGKQVFSLLIRPNKKSPVVINLDAKNKVYIPPKDKSFPNE------MSINDGFVIIR 655

Query: 513  NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
             SE++SG + K+ LG+G K  ++  +LRDYG    +  MNR+AKL AR++GN GFSIGI 
Sbjct: 656  GSEILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANTMNRMAKLCARYLGNRGFSIGIS 715

Query: 573  DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
            DV P  +L DKK +++   Y  C+  I  +  GKL+ +PGC+  QTLEA I  +L+++RE
Sbjct: 716  DVTPSSDLRDKKEEMVRFAYAKCDELIDMFKNGKLETQPGCNEEQTLEAKIGGLLSKVRE 775

Query: 633  DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
            + G  C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF
Sbjct: 776  EVGDVCINELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 835

Query: 693  PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
             + +K P +KGFV NSF+SGL+  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LED
Sbjct: 836  QKNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 895

Query: 753  LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR----------------- 795
            LS QYD++VR +   IVQF YG DG+DP +MEG + +P+NF R                 
Sbjct: 896  LSCQYDDTVRTSANGIVQFTYGGDGLDPLDMEG-NAKPVNFIRSWDHACNITFNKNETGL 954

Query: 796  ----LLMKVKATCPPAGQRYLSPQQVSEIVEKQL---AAYGKESCSE-AFLNSLRKFFEG 847
                ++ +      P  ++ +    +  +V K+L     Y     +E AF  SLR + + 
Sbjct: 955  LPYEIVRETDNVLKPLEEKLIRYDNLGAVVPKELIDDERYADRHDAERAFYKSLRMYMQE 1014

Query: 848  QQDKLDKKIKFVEDI------GWDDKSQI----LEEVTHKTSGITEKQLEVFIQTCFSRY 897
            +  +L  +I+    +      G D   ++    L+    +   IT+K +  F+     +Y
Sbjct: 1015 KAARL-AQIRNTRGLLEMTQNGGDTSMEVVSSELQASVDQVYKITKKNVNAFLTIALHKY 1073

Query: 898  RVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRIST 957
               +VE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K IST
Sbjct: 1074 HRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVIST 1133

Query: 958  PIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHL 1017
            PII A L    +E AARVVKGRIEKTLL  +A  I+ V    ++ + I +D+ TI+   L
Sbjct: 1134 PIINAVLVNEGDERAARVVKGRIEKTLLSDLAFYIQDVYRGNMSYLEIRVDLATIEKLQL 1193

Query: 1018 CINADIVKESIVQTPKIKLKQQHIKVLDFRKLE--IFPPVDKSK-------------IHF 1062
             +  + +  ++ + PK+K++   I +L   K+   ++P   K+K             + +
Sbjct: 1194 ELTMEDIAVALSRAPKLKIQTTDIHILGKDKIHVNVYPEGMKAKSISTSAKEPSENEVFY 1253

Query: 1063 ELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAE 1122
            ++ +L+  LP V+VKG+  + R VI  ++  KR+           LLVEG GL+ VM  +
Sbjct: 1254 KMQTLRRSLPDVVVKGLPDISRAVINIRDDGKRE-----------LLVEGYGLREVMCTD 1302

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
            G+ G KT +NH+ EV   LGIEAAR  I+ EI+ TM  HGMS+D RH+ LL D+MT++GE
Sbjct: 1303 GVIGSKTITNHVLEVNSVLGIEAARASIVGEIDYTMSNHGMSVDPRHIQLLGDVMTYKGE 1362

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            VLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSECII+G  M +GTG 
Sbjct: 1363 VLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSVGTGS 1422

Query: 1243 LKIRQRDAV 1251
             K+ + + V
Sbjct: 1423 FKVVKYNDV 1431


>gi|145242160|ref|XP_001393726.1| DNA-directed RNA polymerase III subunit RPO31 [Aspergillus niger CBS
            513.88]
 gi|134078271|emb|CAK96852.1| unnamed protein product [Aspergillus niger]
          Length = 1450

 Score = 1128 bits (2918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/1308 (46%), Positives = 834/1308 (63%), Gaps = 99/1308 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKVT 59
            MR P ++ LR+  + K I ++C     K   C  CG +NG+VKKA  + L I HD+ +  
Sbjct: 138  MRRPGLDNLRRGQIAKRINERCR----KTRNCEACGAVNGVVKKAGTSALKITHDKFRAF 193

Query: 60   ESL---------------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
             +                + F  A T   E +     A   +N + VL LFK+++DTDCE
Sbjct: 194  NASTSVKKVPPPSKIVFDRSFDEARTSNAEVEKHYKKAQDDMNALRVLNLFKKISDTDCE 253

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP+ IRPSV  D + S E+D+T +L  I+Q+N +L+  L
Sbjct: 254  LLGLNPKEARPEMFLWQFIPAPPVCIRPSVGQDAA-STEDDLTAKLGDIVQSNINLKNAL 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
            ++       +  W+ +Q+++A YINSDV G+     + +P+ GFVQRLKGKQGRFRGNLS
Sbjct: 313  LKGAPVQTIMECWDYMQLQIAVYINSDVPGLN-KADLGKPIRGFVQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL++ EVA+P  +A+ +TYPE V+ +N EKL+Q ++NG  K+PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 431

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  I     T ++   YG   N +A +L+ G +++RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYIMKKGQTFKLFLKYGNL-NMIADQLQEGDVIERHIEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491  FAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++++ QDF++++++++ KD F+DR +F+ +C YM     R DLP PA+LKP  LWTGKQ
Sbjct: 551  PIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPQTRFDLPPPAVLKPQMLWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F++L+RP+ +  V VNL    + +      T  D       + P D ++  RNSE++ G
Sbjct: 611  VFNILMRPNKDDPVLVNLDAACRQFKAPKDGTPRD-------LDPKDSWLVIRNSEVMCG 663

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K+T+G+G KD ++ ++LRDYG  A +  MNRL++LSARW  N GFSIGI DV P ++
Sbjct: 664  VMDKSTIGSGKKDNVFYIMLRDYGPVAAAEGMNRLSRLSARWFTNMGFSIGITDVYPSEK 723

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K  L+   Y  C+  I +Y  G L+  PGCD  QT+E  ++ IL+++R+ AG  C+
Sbjct: 724  LLRSKHDLVETAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQQAGDECI 783

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN+SQMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P
Sbjct: 784  AQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQP 843

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             +KGFV NSF+SGL  TEF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD+
Sbjct: 844  PSKGFVRNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDD 903

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +MEGK+ +P++FDR  +  ++T     +R L P ++ E
Sbjct: 904  TVRNSSAAIVQFQYGDDKLDPLDMEGKA-KPVHFDRTFIHAESTTYKNDERSLLPAEIME 962

Query: 820  IVEKQLAA----------------------YGKESCSEA--FLNSLRKFFEGQQDKLDKK 855
            I E+ L+                       +G +    A  FL S++++   + DKL   
Sbjct: 963  ICEEMLSKERSKLVRKDLMGNELGYMDRSDHGVDQFESARDFLESIQQYVATKADKL--- 1019

Query: 856  IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQS 915
            I    DI  +D+    ++  + T  +TE+ L  FI +C  +Y+  +VEAG A+GA+GAQS
Sbjct: 1020 ISRGGDIDPNDERS--QKGLNHTGKLTERTLRTFISSCLMKYKKAQVEAGHAVGAVGAQS 1077

Query: 916  IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARV 975
            IGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP++  EL   DN  AAR+
Sbjct: 1078 IGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVVACELVTKDNIIAARI 1137

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESI------- 1028
            VKGRIEKT L  +   ++   T + A I + ++ +TIQD  L +  + +  +I       
Sbjct: 1138 VKGRIEKTYLRDIIHYVRETWTGKEAYITVKINWKTIQDLALELKIENILSAIKNHKRFK 1197

Query: 1029 VQTPKIKLKQQHIKVLDFRKLEIFPP----VDKSKI-------HFELYSLKNVLPMVIVK 1077
                K +  + HI V     +++ P     + K++I          L  LK +LP + V 
Sbjct: 1198 ADDLKFRCSRSHIHVY----MDVDPSTKANLSKTEIAHTSADPFLRLKHLKRMLPDIQVL 1253

Query: 1078 GIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEV 1137
            G     R +I   E                LLVEG GL+  M   G+DG +T +N++ E+
Sbjct: 1254 GHPQAFRAIIRTDETSTTNT----------LLVEGYGLRECMTTMGVDGLRTSTNNVMEM 1303

Query: 1138 QQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKS 1197
            +  LGIEAAR  I+ EI+E MK   M ID RHM LLAD+MT++GEVLGITRFG+ KM  S
Sbjct: 1304 RDVLGIEAARTTIVQEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDS 1361

Query: 1198 VLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            VL LASFEKTADHLF+A   GR D IEGVSECIIMG  + LGTG +++
Sbjct: 1362 VLQLASFEKTADHLFDAGGAGRSDLIEGVSECIIMGKTVSLGTGAMEV 1409


>gi|358371706|dbj|GAA88313.1| DNA-directed RNA polymerase III largest subunit [Aspergillus kawachii
            IFO 4308]
          Length = 2146

 Score = 1128 bits (2918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/1308 (46%), Positives = 834/1308 (63%), Gaps = 99/1308 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKVT 59
            MR P ++ LR+  + K I ++C     K   C  CG +NG+VKKA  + L I HD+ +  
Sbjct: 834  MRRPGLDNLRRGQIAKRINERCR----KTRNCEACGAVNGVVKKAGTSALKITHDKFRAF 889

Query: 60   ESL---------------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
             +                + F  A T   E +     A   +N + VL LFK+++DTDCE
Sbjct: 890  NASTSVKKVPPPSKIVFDRSFDEARTSNAEVEKHYKKAQDDMNALRVLNLFKKISDTDCE 949

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP+ IRPSV  D + S E+D+T +L  I+Q+N +L+  L
Sbjct: 950  LLGLNPKEARPEMFLWQFIPAPPVCIRPSVGQDAA-STEDDLTAKLGDIVQSNINLKNAL 1008

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
            ++       +  W+ +Q+++A YINSDV G+     + +P+ GFVQRLKGKQGRFRGNLS
Sbjct: 1009 LKGAPVQTIMECWDYMQLQIAVYINSDVPGLN-KADLGKPIRGFVQRLKGKQGRFRGNLS 1067

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL++ EVA+P  +A+ +TYPE V+ +N EKL+Q ++NG  K+PG
Sbjct: 1068 GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 1127

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  I     T ++   YG   N +A +L+ G +++RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct: 1128 ANYIMKKGQTFKLFLKYGNL-NMIADQLQEGDVIERHIEDGDIVLFNRQPSLHKLSILSH 1186

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 1187 FAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 1246

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++++ QDF++++++++ KD F+DR +F+ +C YM     R DLP PA+LKP  LWTGKQ
Sbjct: 1247 PIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPQTRFDLPPPAVLKPQMLWTGKQ 1306

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F++L+RP+ +  V VNL    + +      T  D       + P D ++  RNSE++ G
Sbjct: 1307 VFNILMRPNKDDPVLVNLDAACREFKAPKDGTPRD-------LDPKDAWLVIRNSEVMCG 1359

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K+T+G+G KD ++ ++LRDYG  A +  MNRL++LSARW  N GFSIGI DV P ++
Sbjct: 1360 VMDKSTIGSGKKDNVFYIMLRDYGPVAAAEGMNRLSRLSARWFTNMGFSIGITDVYPSEK 1419

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K  L+   Y  C+  I +Y  G L+  PGCD  QT+E  ++ IL+++R+ AG  C+
Sbjct: 1420 LLRSKHNLVETAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQQAGDECI 1479

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN+SQMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P
Sbjct: 1480 AQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQP 1539

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             +KGFV NSF+SGL  TEF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD+
Sbjct: 1540 PSKGFVRNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDD 1599

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +MEGK+ +P++FDR  +  ++T     +R L P ++ E
Sbjct: 1600 TVRNSSAAIVQFQYGDDKLDPLDMEGKA-KPVHFDRTFIHAESTTYKNDERSLLPAEIME 1658

Query: 820  IVEKQLAA----------------------YGKESCSEA--FLNSLRKFFEGQQDKLDKK 855
            I E+ L+                       +G +    A  FL S++++   + DKL   
Sbjct: 1659 ICEEMLSKERSKLVRKDLMGNELGYMDRSDHGVDQFESARDFLESIQQYVATKADKL--- 1715

Query: 856  IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQS 915
            I    DI  +D+    ++  + T  +TE+ L  FI +C  +Y+  +VEAG A+GA+GAQS
Sbjct: 1716 ISRGGDIDPNDERS--QKGLNHTGKLTERTLRTFISSCLMKYKKAQVEAGHAVGAVGAQS 1773

Query: 916  IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARV 975
            IGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP++  EL   DN  AAR+
Sbjct: 1774 IGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVVACELVTKDNIIAARI 1833

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESI------- 1028
            VKGRIEKT L  +   ++   T + A I + ++ +TIQD  L +  + +  +I       
Sbjct: 1834 VKGRIEKTYLRDIIHYVRETWTGKEAYITVKINWKTIQDLALELKIENILSAIKNHKRFK 1893

Query: 1029 VQTPKIKLKQQHIKVLDFRKLEIFPP----VDKSKI-------HFELYSLKNVLPMVIVK 1077
                K +  + HI V     +++ P     + K++I          L  LK +LP + V 
Sbjct: 1894 ADDLKFRCSRSHIHVY----MDVDPSTKANLSKTEIAHTSADPFLRLKHLKRMLPDIQVL 1949

Query: 1078 GIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEV 1137
            G     R +I   E                LLVEG GL+  M   G+DG +T +N++ E+
Sbjct: 1950 GHPQAFRAIIRTDETSTTNT----------LLVEGYGLRECMTTMGVDGLRTSTNNVMEM 1999

Query: 1138 QQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKS 1197
            +  LGIEAAR  I+ EI+E MK   M ID RHM LLAD+MT++GEVLGITRFG+ KM  S
Sbjct: 2000 RDVLGIEAARTTIVQEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDS 2057

Query: 1198 VLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            VL LASFEKTADHLF+A   GR D IEGVSECIIMG  + LGTG +++
Sbjct: 2058 VLQLASFEKTADHLFDAGGAGRSDLIEGVSECIIMGKTVSLGTGAMEV 2105


>gi|425778039|gb|EKV16185.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
 gi|425781413|gb|EKV19382.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
          Length = 2075

 Score = 1127 bits (2914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/1308 (46%), Positives = 841/1308 (64%), Gaps = 99/1308 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKK-AVAVLGIIHDRSK-- 57
            MR P ++ LR+T + K I ++C     K  +C  CG ING+VKK   + L I HD+ +  
Sbjct: 765  MRRPGLDNLRRTQIAKRINERCR----KTRECTYCGAINGVVKKTGTSALKITHDKFRAF 820

Query: 58   -VTESLQE------------FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
             V+ S+++            F  A     + +     A   +NP+ VL LFK+M+D+DCE
Sbjct: 821  NVSVSVKKQTPISKDVFDNSFLEARGANPDVEKHFKKAQDDMNPLRVLKLFKKMSDSDCE 880

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            ++ ++    RPE  +   I  PP+ IRPSV  DG+ S E+D+T +L  I+Q+N +L+  L
Sbjct: 881  LIGMNPKEARPEMFLWQFIPAPPVCIRPSVGQDGA-STEDDLTAKLGDIVQSNINLKNAL 939

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
            ++       +  W+ +Q+++A YINSDV G+     + +P+ GFVQRLKGKQGRFRGNLS
Sbjct: 940  LKGAPVQTIMECWDYMQLQIAVYINSDVPGLN-KADLGKPIRGFVQRLKGKQGRFRGNLS 998

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL++ EVA+P  +A+ +TYPE V+ +N EKL+Q I NG +K+PG
Sbjct: 999  GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPELVTRYNKEKLQQRICNGSNKWPG 1058

Query: 282  ARMIRYPDGTARVLYGKFRN--QLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A +I    GT      K+ N  ++A  L+ G +V+RHLEDGD+VLFNRQPSLH++SI+ H
Sbjct: 1059 ANLI-VKKGTGFRQMLKYSNTQRMADALQEGDLVERHLEDGDIVLFNRQPSLHKLSILSH 1117

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A+I P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 1118 FAKIRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 1177

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++++ QDF++++++++ KD F+DRA+F+ +C YM     R DLP P++LKP  +WTGKQ
Sbjct: 1178 PIISAIQDFISAAYVLSSKDNFFDRASFTQICLYMLGPETRFDLPPPSVLKPQMMWTGKQ 1237

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F++L+RP+++  V VNL    + +          ++ R + + PNDG++  RNSE++ G
Sbjct: 1238 VFNILMRPNSSDPVMVNLDAACREFKMP-------KDGRPKDLDPNDGWLVIRNSEVMCG 1290

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K+T+G+G KD ++ ++LRD+G  A +  MNRL+KLSARW  N GFSIGI DV P   
Sbjct: 1291 VMDKSTIGSGKKDNVFYIMLRDFGPPAAAEGMNRLSKLSARWFTNIGFSIGIGDVYPSAG 1350

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K  L+   Y  C+  I +Y  G L+  PGCD  QT+E  I+ IL+++R+ AG  C+
Sbjct: 1351 LVQSKNDLVEAAYSQCDEVIAKYKAGTLEKYPGCDELQTMENQISGILSKVRQQAGDECI 1410

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN+SQMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P
Sbjct: 1411 KQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQP 1470

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             +KGFV NSF+SGL   EF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS  YD+
Sbjct: 1471 PSKGFVRNSFFSGLEPPEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSMYDD 1530

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +MEGK+ +P++FDR  +  ++T     +R L P+++ E
Sbjct: 1531 TVRNSSAAIVQFQYGDDKLDPVDMEGKA-KPVHFDRTFIHSESTTYNNDERSLLPKEIME 1589

Query: 820  IVEKQLA----------------AYGKES--------CSEAFLNSLRKFFEGQQDKLDKK 855
            + E+ L+                AY   S         +  FL+S++++ + + DKL  +
Sbjct: 1590 VCEQMLSKERAKLNRKDLLGNDLAYMDRSDHGIDQFESARDFLDSIQEYVQKRADKLISR 1649

Query: 856  IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQS 915
                    +D   Q   +    T  +T+  L  FI  C  +Y+  +VE G A+GA+GAQS
Sbjct: 1650 -----GGDFDPSDQRSRKGLDHTGKLTDTTLRAFITACLLKYKKAQVEPGHAVGAVGAQS 1704

Query: 916  IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARV 975
            IGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP++  EL   ++  AAR+
Sbjct: 1705 IGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVVACELVNKESTIAARI 1764

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIK 1035
            VKGRIEKT L  V +SI  V +   A + + L+ +TI+D  L I    + E+I    + K
Sbjct: 1765 VKGRIEKTFLSDVIRSITEVWSPDEAYLKVVLNWKTIEDLALEITTPQIVEAIKTNKRFK 1824

Query: 1036 -------LKQQHIKVLDFRKLEIFPP----VDKSKI-------HFELYSLKNVLPMVIVK 1077
                    KQ  IKV     +++ P     + K++I          L  LK +LP + + 
Sbjct: 1825 GSDLKFSCKQASIKV----HMDLDPASKAGLSKTEIAATSVDPFLRLKHLKRILPNIQIL 1880

Query: 1078 GIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEV 1137
            G     R +I   E                LLVEG GL+  M   G+DG +T++N+I E 
Sbjct: 1881 GHPRATRAIIRTDETSTTNT----------LLVEGYGLRECMTTMGVDGLRTRTNNIMEA 1930

Query: 1138 QQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKS 1197
            ++ LG+EAAR  I+ EI+E MK   M ID RHM LLAD+MT++GEVLGITRFG+ KM  S
Sbjct: 1931 REVLGVEAARSTIVVEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDS 1988

Query: 1198 VLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            VL LASFEKTADHLF+A   GR D IEGVSECIIMG  + LGTG +++
Sbjct: 1989 VLQLASFEKTADHLFDAGGLGRTDLIEGVSECIIMGKTVSLGTGAMEV 2036


>gi|119490427|ref|XP_001263030.1| DNA-directed RNA polymerase III largest subunit, putative
            [Neosartorya fischeri NRRL 181]
 gi|119411190|gb|EAW21133.1| DNA-directed RNA polymerase III largest subunit, putative
            [Neosartorya fischeri NRRL 181]
          Length = 1453

 Score = 1126 bits (2913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1307 (46%), Positives = 840/1307 (64%), Gaps = 97/1307 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSK-- 57
            MR P ++ LR+  + K I ++C     K   C  CG ING+VKKA  + L I HD+ +  
Sbjct: 138  MRRPGLDNLRRLQIAKRINERCR----KTRTCEACGAINGVVKKAGNSALKITHDKFRAF 193

Query: 58   -VTESLQE------------FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
             V+ S+++            F  A T   E +     A   +N + VL LFK+++DTDCE
Sbjct: 194  NVSTSVKKVPPPSKIVFDRSFDEARTSNAEVEKHYKKAQDDMNALRVLNLFKKVSDTDCE 253

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP+ IRPSV  D + S E+D+T +L  I+Q+N +L+  L
Sbjct: 254  LLGLNPKEARPEMFLWQFIPAPPVCIRPSVGQDAA-STEDDLTAKLGDIVQSNINLKNAL 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
            ++       +  W+ +Q+++A YINSDV G+     + +P+ GFVQRLKGKQGRFRGNLS
Sbjct: 313  MKGAPVQTIVECWDYMQLQIAVYINSDVPGLN-KADLGKPIRGFVQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL++ EVA+P  +A+ +TYPE V+ +N EKL+Q ++NG  K+PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 431

Query: 282  ARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  I  +  D    + YG   N +A +++ G +++RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYIIKKGSDFKLFLKYGNL-NMIADQIQEGDVIERHIEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491  FAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++++ QDF++++++++ KD F+DR +F+ +C YM     R DLP PA+LKP  LWTGKQ
Sbjct: 551  PIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPETRFDLPPPAVLKPQMLWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F++L+RP  +  V VNL    + +       +  ++ R + + PNDG++  RNSE++ G
Sbjct: 611  VFNILMRPSKDDPVLVNLDAACREF-------KPPKDGRPKDLDPNDGWLVIRNSEVMCG 663

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + KAT+G+G KD ++ ++LRD+G  A +  MNRL+KLSARW  N GFSIGI DV P + 
Sbjct: 664  VMDKATIGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFTNMGFSIGITDVYPSES 723

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K +L+   Y  C+  I +Y  G L+  PGCD  QT+E  ++ IL+++R+ AG  C+
Sbjct: 724  LVRSKNELVEAAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQQAGDECI 783

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN+SQMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P
Sbjct: 784  AQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQP 843

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             +KGFV NSF+SGL  TEF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD+
Sbjct: 844  PSKGFVRNSFFSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDD 903

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +MEGK+ +P++FDR  +  ++      +R L P ++ E
Sbjct: 904  TVRNSSDAIVQFQYGDDKLDPVDMEGKA-KPVHFDRTFIHAESITYDNDERSLLPHEIME 962

Query: 820  IVEKQLAAYGKESCSEAFL-----------------NSLRKFFEGQQ----DKLDKKIKF 858
            + E+ L+    +   E  L                  S R F E  Q     K DK I  
Sbjct: 963  VCEEMLSKERAKLVREDLLGNKLSYMDRSDHGVDQFESARDFLESIQQYISSKADKLISR 1022

Query: 859  VEDIG-WDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIG 917
              DI   D++SQ  + + H T  +TEK L  FI +C  +Y+  +VE G A+GA+GAQSIG
Sbjct: 1023 GGDIDPSDERSQ--KGLNH-TGKLTEKTLRTFITSCLMKYKKAQVEPGHAVGAVGAQSIG 1079

Query: 918  EPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVK 977
            EPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+I+ +L   DN  AAR+VK
Sbjct: 1080 EPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVISCDLVTKDNVIAARIVK 1139

Query: 978  GRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLK 1037
            GRIEKT L  +   ++   T + A + + ++ ETIQ+  L +    + ++I    + K  
Sbjct: 1140 GRIEKTYLRDIIHYVREAWTGKEAYLTVKINWETIQNLALELKIRNIVDAIKNHKRFKAD 1199

Query: 1038 QQHIKVLDFRK----LEIFPPVD--------KSKI-------HFELYSLKNVLPMVIVKG 1078
                  L FR     + I+  +D        K++I          L  LK +LP + V G
Sbjct: 1200 D-----LKFRSTNSHIHIYMDIDPASKASLSKTEIAATSADPFLRLKHLKRILPDIQVLG 1254

Query: 1079 IKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQ 1138
                 R +I          + +       LLVEG GL+  M   G++G +T +N++ E++
Sbjct: 1255 HPQASRAII----------RTDDTSSTNTLLVEGYGLKECMTTLGVNGLRTSTNNVMEMR 1304

Query: 1139 QTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSV 1198
              LGIEAAR+ I+ EI+E MK   M ID RHM LLAD+MT++GEVLGITRFG+ KM  SV
Sbjct: 1305 DVLGIEAARVTIVQEISEVMK--DMGIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSV 1362

Query: 1199 LMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            L LASFEKTADHLF+A   GR D IEGVSECIIMG  + LGTG +++
Sbjct: 1363 LQLASFEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTGAMEV 1409


>gi|358385218|gb|EHK22815.1| hypothetical protein TRIVIDRAFT_28982 [Trichoderma virens Gv29-8]
          Length = 1465

 Score = 1125 bits (2911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/1326 (45%), Positives = 831/1326 (62%), Gaps = 110/1326 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKV-- 58
            +R P ++ +R+T + K I ++C     K  +CP CG ING ++K V VL + HD+     
Sbjct: 136  LRRPGLDNIRRTQICKKINEQCR----KCRQCPYCGEINGQIRK-VGVLKLTHDKFSAYK 190

Query: 59   ---------TESLQEFASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCEV 105
                      ES   F ++    K+    ++     A   LNP+ VL  FK +T TDCE+
Sbjct: 191  KSTSQKKLPPESKLAFDASFDEAKKLNPDLDKHLVRAMEDLNPLWVLNHFKMITPTDCEL 250

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L     RPE  I   +  PP+ IRPSV  +G+ S E+D+T +L  I+  +  ++  L 
Sbjct: 251  LGLDPSEGRPEMFIWQFVPAPPVCIRPSVAQEGA-STEDDLTAKLAEIVYISGLIRTALN 309

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            +       +  WE LQ+++A Y+NSDV G+       + + GF QRLKGKQGRFRGNLSG
Sbjct: 310  KGKPMQTIMEQWEYLQLQIAMYVNSDVPGLN-QPGFGKSIRGFCQRLKGKQGRFRGNLSG 368

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I +VA+P  +A+ LT+PERV + N+EKLRQCI NGP  +PGA
Sbjct: 369  KRVDFSGRTVISPDPNLGINQVAVPQLVAKNLTFPERVQNQNLEKLRQCILNGPKVWPGA 428

Query: 283  RMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
              +   +G  +  + +G  R  +A +L+ G IV+RHLEDGDVVLFNRQPSLH++SIM H 
Sbjct: 429  NHVIKDNGNWKQDLQFGD-RALVARDLRIGDIVERHLEDGDVVLFNRQPSLHKLSIMSHL 487

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
            A+I PWRT R NE VC PYNADFDGDEMN+HVPQ+EEAR EA+ LMGV+NNL TPKNGE 
Sbjct: 488  AKIRPWRTFRLNECVCGPYNADFDGDEMNLHVPQSEEARAEAITLMGVKNNLATPKNGEP 547

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A+TQDF+T+S+L++ KD FY+R  F+ +C +M DG+  +DLP P+I+KP  LWTGKQ+
Sbjct: 548  IIAATQDFITASYLLSSKDRFYNRKTFTYICTHMMDGVTHLDLPPPSIIKPEALWTGKQI 607

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            F+VL+RP+    V VNL  + + YS +          +   M PND ++  RNSE++ G+
Sbjct: 608  FNVLMRPNKQSPVLVNLDARCREYSAR--------PGQCPDMDPNDAWLVIRNSEVMCGR 659

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + K+ +G+G K+ ++ ++LRD+G       MNRL KL AR +GN GFS+G+ DV P  EL
Sbjct: 660  MDKSIIGSGKKNSVFYIILRDFGPDHAVMAMNRLTKLCARQLGNQGFSLGVGDVFPITEL 719

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
            +  + +L+ + Y+  +  I+ +  GKL+   GCD  QTLE  I+ IL+++R+ AG+ C+ 
Sbjct: 720  TKSRDRLVQDAYDKSDSLIETFKAGKLEKAAGCDMEQTLEISISGILSKVRQQAGQQCVD 779

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
            +L   N+PLIM+  GSKG  IN++QMVACVGQQ +GG+R P+GF DRSLPHF + A++PA
Sbjct: 780  TLSRNNAPLIMANSGSKGLHINVAQMVACVGQQIIGGQRVPDGFQDRSLPHFHKNARQPA 839

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSFYSGL  TEFFFH + GREGL+DTAVKTA+TGYMSRRL+K+LEDLS QYDN+
Sbjct: 840  SKGFVRNSFYSGLFPTEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLSTQYDNT 899

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEI 820
            VR + G IVQF +G D +DP +MEG S  P+ FDR     ++T     +R L P ++ E+
Sbjct: 900  VRTSSGTIVQFQFGADKLDPVDMEG-SAVPVQFDRTWTHAESTTWDNNERSLLPHEILEV 958

Query: 821  VEKQL-------------------------AAYGKESCSEAFLNSLRKFFEGQQDKLDK- 854
                L                          A  +   +  F+ ++  +   +  K+ K 
Sbjct: 959  CSSMLDKEKLRYQRRRLVDNALLDYSDPTDEALDEHESARGFIETIYSYVSERAQKMSKA 1018

Query: 855  -----------KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVE 903
                       + + + D   D K+Q+      + S ++   L+ F++ C  RY    VE
Sbjct: 1019 RALVGLDPNPSQDEVIADASADLKAQLAR--VDRVSKVSMTTLQRFVKECLERYHKAHVE 1076

Query: 904  AGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAE 963
             G A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT  
Sbjct: 1077 PGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKNISTPVITCP 1136

Query: 964  LECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADI 1023
            L  +    AA++VKGRIEKT +  V K+I+    S   +IV+ +DME +Q+ HL I    
Sbjct: 1137 LLNDKQIEAAKIVKGRIEKTYVIDVLKAIEDEWVSDRGTIVLYIDMEALQNMHLGIGVVD 1196

Query: 1024 VKESIVQTPKIKLKQQHIKV-LDFRKLEIF-----PPVDKSK---------------IHF 1062
            + E+I++  K+K++   I V  ++ K+ +      P   K +                  
Sbjct: 1197 IAEAILKFKKLKIQPTDISVGPNYIKIYVLNSWVDPDAAKKRQRSLASLTLTEEAPDFLL 1256

Query: 1063 ELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAE 1122
             +  L+ +LP V + G     R +I           +  E  ++ +LVEG GL+A M  E
Sbjct: 1257 RVNHLRRMLPKVPISGYNEATRAII-----------QTSETSEHTVLVEGYGLRACMTTE 1305

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
            G+ G K++SN + E +  LGIEAAR  I+DEI+  M   GM ID RH+ LLAD+MTF+GE
Sbjct: 1306 GVIGTKSRSNSVMEARDVLGIEAARTTIVDEISSVMA--GMDIDPRHIQLLADVMTFKGE 1363

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            VLGITRFG+ KM +SVL LASFEKT DHLF A+   + DRIEGVSECIIMG  M +GTG 
Sbjct: 1364 VLGITRFGLSKMRESVLQLASFEKTPDHLFEAAAGMKTDRIEGVSECIIMGQTMSVGTGS 1423

Query: 1243 LKIRQR 1248
             ++ +R
Sbjct: 1424 FQVVRR 1429


>gi|70998935|ref|XP_754189.1| DNA-directed RNA polymerase III largest subunit [Aspergillus
            fumigatus Af293]
 gi|66851826|gb|EAL92151.1| DNA-directed RNA polymerase III largest subunit, putative
            [Aspergillus fumigatus Af293]
 gi|159127207|gb|EDP52322.1| DNA-directed RNA polymerase III largest subunit, putative
            [Aspergillus fumigatus A1163]
          Length = 1453

 Score = 1125 bits (2911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/1307 (46%), Positives = 841/1307 (64%), Gaps = 97/1307 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSK-- 57
            MR P ++ LR+  + K + ++C     K   C  CG ING+VKKA  + L I HD+ +  
Sbjct: 138  MRRPGLDNLRRLQIAKRVNERCR----KTRTCEACGAINGVVKKAGNSALKITHDKFRAF 193

Query: 58   -VTESLQE------------FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
             V+ S+++            F  A T   E +     A   +N + VL LFK+++DTDCE
Sbjct: 194  NVSTSVKKVPPPSKIVFDRSFDEARTSNPEVEKHYKKAQDDMNALRVLNLFKKVSDTDCE 253

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP+ IRPSV  D + S E+D+T +L  I+Q+N +L+  L
Sbjct: 254  LLGLNPKEARPEMFLWQFIPAPPVCIRPSVGQDAA-STEDDLTAKLGDIVQSNINLKNAL 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
            ++       +  W+ +Q+++A YINSDV G+     + +P+ GFVQRLKGKQGRFRGNLS
Sbjct: 313  MKGAPVQTIVECWDYMQLQIAVYINSDVPGLN-KADLGKPIRGFVQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL++ EVA+P  +A+ +TYPE V+ +N EKL+Q ++NG  K+PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 431

Query: 282  ARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  I  +  D    + YG   N +A +++ G +++RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYIIKKGSDFKLFLKYGNL-NMIADQIQEGDVIERHIEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491  FAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++++ QDF++++++++ KD F+DR +F+ +C YM     R DLP PA+LKP  LWTGKQ
Sbjct: 551  PIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPETRFDLPPPAVLKPQMLWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F++L+RP+ +  V VNL    + +       +  ++ R + + PNDG++  RNSE++ G
Sbjct: 611  VFNILMRPNKDDPVLVNLDAACREF-------KPPKDGRPKDLDPNDGWLVIRNSEVMCG 663

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + KAT+G+G KD ++ ++LRD+G  A +  MNRL+KLSARW  N GFSIGI DV P + 
Sbjct: 664  VMDKATIGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFTNMGFSIGITDVYPSES 723

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K +L+   Y  C+  I +Y  G L+  PGCD  QT+E  ++ IL+++R+ AG  C+
Sbjct: 724  LVRSKNELVEVAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQQAGDECI 783

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN+SQMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P
Sbjct: 784  AQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQP 843

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             +KGFV NSF+SGL  TEF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD+
Sbjct: 844  PSKGFVRNSFFSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDD 903

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +MEGK+ +P++FDR  +  ++      +R L P ++ E
Sbjct: 904  TVRNSSDAIVQFQYGDDKLDPVDMEGKA-KPVHFDRTFIHAESITYDNDERSLLPHEIME 962

Query: 820  IVEKQLAAYGKESCSEAFL-----------------NSLRKFFEGQQ----DKLDKKIKF 858
            + E+ L+    +   E  L                  S R F E  Q     K DK I  
Sbjct: 963  VCEEMLSKERAKLVREDLLGNKLAYMDRSDHGVDQFESARDFLESIQQYISSKADKLISR 1022

Query: 859  VEDIG-WDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIG 917
              DI   D++SQ  + + H T  +TEK L  FI +C  +Y+  +VE G A+GA+GAQSIG
Sbjct: 1023 GGDIDPSDERSQ--KGLNH-TGKLTEKTLRTFITSCLMKYKKAQVEPGHAVGAVGAQSIG 1079

Query: 918  EPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVK 977
            EPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+I+ +L   DN  AAR+VK
Sbjct: 1080 EPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVISCDLVTKDNVIAARIVK 1139

Query: 978  GRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLK 1037
            GRIEKT L  +   ++   T + A + + ++ ETIQ+  L +    + ++I    + K  
Sbjct: 1140 GRIEKTYLRDIIHYVREAWTGKEAYLTVKINWETIQNLALELKIRNIVDAIKNHKRFKAD 1199

Query: 1038 QQHIKVLDFRK----LEIFPPVD--------KSKI-------HFELYSLKNVLPMVIVKG 1078
                  L FR     + I+  +D        K++I          L  LK +LP + V G
Sbjct: 1200 D-----LKFRSTNSHIHIYMDIDPASKASLSKTEIAATSADPFLRLKHLKRILPDIQVLG 1254

Query: 1079 IKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQ 1138
                 R +I          + +       LLVEG GL+  M   G++G +T +N++ E++
Sbjct: 1255 HPQANRAII----------RTDDTSSTNTLLVEGYGLKECMTTLGVNGLRTSTNNVMEMR 1304

Query: 1139 QTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSV 1198
              LGIEAAR+ I+ EI+E MK   M ID RHM LLAD+MT++GEVLGITRFG+ KM  SV
Sbjct: 1305 DVLGIEAARVTIVQEISEVMK--DMGIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSV 1362

Query: 1199 LMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            L LASFEKTADHLF+A   GR D IEGVSECIIMG  + LGTG +++
Sbjct: 1363 LQLASFEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTGAMEV 1409


>gi|449525688|ref|XP_004169848.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
           subunit rpc1-like, partial [Cucumis sativus]
          Length = 693

 Score = 1125 bits (2910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/684 (78%), Positives = 592/684 (86%), Gaps = 12/684 (1%)

Query: 174 WETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVI 233
           W+ LQ EVAQ INSDVRG+PFSMQV++PL+GFVQRLKGKQGRFRGNL GKRVE+TGRTVI
Sbjct: 3   WDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTGRTVI 62

Query: 234 SPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTAR 293
           SPDPNLKITEVA+PI MARILTYPERV+ HNIEKLRQC+ NGPDKYPGARM+R+ DG+ R
Sbjct: 63  SPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYPGARMLRHLDGSMR 122

Query: 294 VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNE 353
            L    R +LA ELK G IV+RHLEDGDVVLFNRQPSLHRMSIMCHR R+MPWRTLRFNE
Sbjct: 123 SLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTLRFNE 182

Query: 354 SVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSF 413
           SVCNPYNADFDGDEMNMHVPQTEEARTEA+LLMGVQNNLCTPKNGEILVASTQDFLTSSF
Sbjct: 183 SVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSF 242

Query: 414 LITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRV 473
           LITRKDTFYDRAAFSLMC YMGDGMD VDLPTPA++KP+ELWTGKQLFSVL+RPHA+M+V
Sbjct: 243 LITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQLFSVLVRPHASMKV 302

Query: 474 YVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDG 533
           Y+NLTVKEK+YS    + +G+E+ R ETMCPNDGFVYFRNSELISGQ+GKATLGNGNKDG
Sbjct: 303 YLNLTVKEKSYS----KVKGNEKER-ETMCPNDGFVYFRNSELISGQVGKATLGNGNKDG 357

Query: 534 LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYE 593
           LYSVLLRDY AHA + CMNRLAKLSARWIGNHGFSIGIDDVQP  +L  K    I E Y 
Sbjct: 358 LYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKKNKXTILEGYR 417

Query: 594 VCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQ 653
            C+ +I  +N G L  + GCDAAQ+LE+ IT ILN IRE     CM +L WRNSPLIMSQ
Sbjct: 418 DCDKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVCMQNLHWRNSPLIMSQ 477

Query: 654 CGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGL 713
           CGSKGSPINISQMVACVGQQSVGGRRAP+GFIDRSLPHF RKAK PAAKGFVANSFYSGL
Sbjct: 478 CGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAAKGFVANSFYSGL 537

Query: 714 SATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLY 773
           +ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI YD+SVRNAGGCIVQF Y
Sbjct: 538 TATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGCIVQFCY 597

Query: 774 GDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLA---AYGK 830
           GDDGMDPA MEGKSG PLNF+RL +K KATCP  G + LSP + SE VE +L+   A  +
Sbjct: 598 GDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVEDRLSKDDASPE 657

Query: 831 ESCSEAFLNSLR----KFFEGQQD 850
             CS AF+ SL+    K+ E Q++
Sbjct: 658 CGCSPAFVGSLKIFLNKYVEAQKN 681


>gi|363753734|ref|XP_003647083.1| hypothetical protein Ecym_5525 [Eremothecium cymbalariae DBVPG#7215]
 gi|356890719|gb|AET40266.1| hypothetical protein Ecym_5525 [Eremothecium cymbalariae DBVPG#7215]
          Length = 1459

 Score = 1125 bits (2909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/1330 (46%), Positives = 831/1330 (62%), Gaps = 112/1330 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHDR 55
            +R P ++ LR+   ++ ++ +C     K  +C  CG +NG+VKKA      A L IIHD 
Sbjct: 127  LRRPGIDNLRRMATLRKVLDQCK----KQRRCLHCGALNGVVKKAATGSGSAALKIIHDT 182

Query: 56   SKVT---------ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +           + + ++   + H  E +  +  +   LNP+  L LFK++   DCE+L
Sbjct: 183  FRWVGKKSAPEKEKWIGDWNQVLQHNPELERYMKRSMDNLNPLKTLNLFKQVRAQDCELL 242

Query: 107  YLSE-----RPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
             +       RPE  I   +  PP+ IRPSV+M D   SNE+D+T +L  I+ T++ ++  
Sbjct: 243  GIDSTVKAGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAG 302

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSD-----VRGVPFSMQVARPLSGFVQRLKGKQGR 215
            L +  S    +  W+ LQ+ VA YINSD     +          +P+ GF QRLKGKQGR
Sbjct: 303  LEKGISINNMMEQWDYLQMAVAMYINSDSVNPALMPGGTGGGKTKPIRGFCQRLKGKQGR 362

Query: 216  FRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNG 275
            FRGNLSGKRV+++GRTVISPDPNL I EVA+P R+A++LTYPERV+ +N  KL+Q I NG
Sbjct: 363  FRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPERVTRYNKHKLQQLIING 422

Query: 276  PDKYPGARMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHR 333
            P+ +PGA  +   +  AR  + YG  R +LA  ++ G +V+RH+EDGDVVLFNRQPSLHR
Sbjct: 423  PNVHPGANYMLKKNEDARRNLRYGD-RIKLAKNIQIGDVVERHIEDGDVVLFNRQPSLHR 481

Query: 334  MSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLC 393
            +SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL 
Sbjct: 482  LSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLL 541

Query: 394  TPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVE 453
            TPK+GE ++++TQDF+T S+LI+ KD+F+DRA F+ +   M D   + DLP PAI+KP  
Sbjct: 542  TPKSGEPIISATQDFITGSYLISHKDSFFDRATFTQLLSMMADANMQFDLPPPAIIKPCY 601

Query: 454  LWTGKQLFSVLIRPHANMRVYVNLTVKEKTY---SNKLIRTEGDEEIRIETMCPNDGFVY 510
            LWTGKQ+FS+LIRP+    V +NL  K K Y    NK    E         M  NDG+V 
Sbjct: 602  LWTGKQVFSLLIRPNKKSPVIINLDAKNKVYLPPKNKSFPNE---------MSSNDGYVI 652

Query: 511  FRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIG 570
             R SE++ G + K+ LG+G K  ++  +LRD+G +  +  MNR+AKL AR++GN GFSIG
Sbjct: 653  IRGSEILCGVMDKSVLGDGKKHSVFYTILRDFGPYEAAKAMNRMAKLCARYLGNRGFSIG 712

Query: 571  IDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRI 630
            I+DV P KEL  KK +++   Y  C+  I  +  G+L+ +PGC+  QTLEA I  +L+++
Sbjct: 713  INDVTPGKELKAKKEEMVEIAYAKCDELIDLFKRGELETQPGCNEEQTLEAKIGGLLSKV 772

Query: 631  REDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLP 690
            RE+ G+ C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLP
Sbjct: 773  REEVGEVCIRELDNLNAPLIMATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLP 832

Query: 691  HFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKAL 750
            HF + +K P +KGFV +SF+SGLS  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+L
Sbjct: 833  HFAKNSKTPQSKGFVRSSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSL 892

Query: 751  EDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQR 810
            EDLS QYDN+VR +   +VQF YG DG+DP NMEG + +P+NF+R             + 
Sbjct: 893  EDLSCQYDNTVRTSSNGVVQFTYGGDGLDPLNMEG-NAQPVNFNRSWDHANNITFNNEEP 951

Query: 811  YLSPQQVSEI-------VEKQL-----------AAYG-------KESCSEAFLNSLRKFF 845
             L P Q+ E        +E+QL           A  G       +      F  SLR + 
Sbjct: 952  GLLPYQIMETSNSILVPLERQLLRLDNVGNAISADLGSNDEYIDQNDAERDFYQSLRTYM 1011

Query: 846  EGQQDKLD--KKIKFVEDIGWDDKSQILEEVTHKTSG-------------ITEKQLEVFI 890
              +  +L   +K K ++ +  ++ +Q L+ +    S              I+   +  F+
Sbjct: 1012 TAKAHRLAQIRKSKGLKSL-LEEPAQELKYMDLDASASTADLNSINQLCKISYNLVTTFL 1070

Query: 891  QTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN 950
                S+Y   +VE GTA+GAIGA SIGEPGTQMTLKTFHFAGVASMNIT GVPRIKEIIN
Sbjct: 1071 NIAISKYHKAKVEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN 1130

Query: 951  GAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDME 1010
             +K ISTPII A L  +++E AARVVKGRIEKTLL  V   I+ V    ++ I + +D+ 
Sbjct: 1131 ASKVISTPIINALLVNDNDERAARVVKGRIEKTLLSDVVFYIQDVYRDNMSFIQVKVDLS 1190

Query: 1011 TIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK----------- 1059
            TI+   L +  + +  +I + PK+K+    + ++   K+ I    D  K           
Sbjct: 1191 TIEKLQLELTIEDIAIAISRAPKLKISTGDVSIIGKNKINISVGNDLEKGKSISTLVSEP 1250

Query: 1060 ----IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGL 1115
                + + +  L+  LP ++VKG+  + R VI   E  KR+           LLVEG GL
Sbjct: 1251 NENDVFYRMQHLRRALPNIVVKGLPDISRAVINILEDGKRE-----------LLVEGYGL 1299

Query: 1116 QAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLAD 1175
            + VM  +G+ G KTK+NH  EV + LGIEAAR  IIDEI+ TM  HGMS+D RH+ LL D
Sbjct: 1300 RDVMTTDGVIGYKTKTNHFLEVFEVLGIEAARTSIIDEIDYTMSNHGMSVDPRHIQLLGD 1359

Query: 1176 LMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIP 1235
            +MT++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D +EGVSECII+G  
Sbjct: 1360 VMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQT 1419

Query: 1236 MPLGTGILKI 1245
            M +GTG  K+
Sbjct: 1420 MSIGTGSFKV 1429


>gi|255938285|ref|XP_002559913.1| Pc13g15170 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211584533|emb|CAP92586.1| Pc13g15170 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1448

 Score = 1124 bits (2907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/1308 (46%), Positives = 835/1308 (63%), Gaps = 99/1308 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKK-AVAVLGIIHDRSKVT 59
            MR P ++ LR+T + K I ++C     K  +C  CG ING+VKK   + L I HD+ +  
Sbjct: 138  MRRPGLDNLRRTQIAKRINERCR----KTRECTYCGAINGVVKKTGTSALKITHDKFRAF 193

Query: 60   ESL---------------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
             +                  F  A     E +     A   +NP+ VL LFK+M+D+DCE
Sbjct: 194  NASVSVKKQTPISKDVFDNSFLEARGANPEVEKHFKKAQDDMNPLRVLKLFKKMSDSDCE 253

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            ++ ++    RPE  +   I  PP+ IRPSV  DG+ S E+D+T +L  I+Q+N +L+  L
Sbjct: 254  LIGMNPKEARPEMFLWQFIPAPPVCIRPSVGQDGA-STEDDLTAKLGDIVQSNINLKNAL 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
            ++       +  W+ +Q+++A YINSDV G+     + +P+ GFVQRLKGKQGRFRGNLS
Sbjct: 313  LKGAPVQTIMECWDYMQLQIAVYINSDVPGLN-KADLGKPIRGFVQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL++ EVA+P  +A+ +TYPE V+ +N EKL+Q I NG +K+PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPELVTRYNKEKLQQRICNGSNKWPG 431

Query: 282  ARMIRYPDGTARVLYGKFRN--QLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A +I    GT      K+ N  ++A +L+ G +V+RHLEDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANLI-VKKGTGFRQMLKYSNTQRMADQLQEGDLVERHLEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A+I P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491  FAKIRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++++ QDF++++++++ KD FYDRA+F+ +C YM     R DLP P+ILKP  +WTGKQ
Sbjct: 551  PIISAIQDFISAAYVLSSKDNFYDRASFTQICLYMLGPETRFDLPPPSILKPQMMWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F++L+RP+ +  V VNL    + +  K+ +    +++      PNDG++  RNSE++ G
Sbjct: 611  VFNILMRPNKDDPVMVNLDAACREF--KMPKDGSPKDLD-----PNDGWLVIRNSEVMCG 663

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K+T+G+G KD ++ +LLRD+G  A +  MNRL+KLSARW  N GFSIGI DV P +E
Sbjct: 664  VMDKSTIGSGKKDNVFYILLRDFGPPAAAEGMNRLSKLSARWFTNIGFSIGIGDVYPSEE 723

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K  L+   Y  C+  I +Y  G L+  PGCD  QT+E  I+ IL+++R+ AG  C+
Sbjct: 724  LVQSKNDLVEAAYSQCDEVIAKYKAGTLEKYPGCDELQTMENQISGILSKVRQQAGDECI 783

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN+SQMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P
Sbjct: 784  RQLSKYNSPLIMATSGSKGSGINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQP 843

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             +KGFV NSF+SGL   EF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS  YD+
Sbjct: 844  PSKGFVRNSFFSGLQPPEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSMYDD 903

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +MEGK+ +P++FDR  +  ++T     +R L P ++ +
Sbjct: 904  TVRNSSAAIVQFQYGDDKLDPVDMEGKA-KPVHFDRTFIHSESTTYNNEERSLLPAEIMD 962

Query: 820  IVEKQLA----------------AYGKES--------CSEAFLNSLRKFFEGQQDKLDKK 855
            + E+ L+                AY   S         +  FL+S++++ + + DKL   
Sbjct: 963  VCEQMLSKERAKLNRKDLLGNDLAYMDRSDHGIDQFESARDFLDSIQEYVQNRADKL--- 1019

Query: 856  IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQS 915
            I    DI  D   Q   +    T  +TE  L  FI  C  +Y+  +VE G A+GA+GAQS
Sbjct: 1020 ISRGGDI--DPSDQRSRKGLDHTGKLTETTLRAFITACLLKYKRAQVEPGHAVGAVGAQS 1077

Query: 916  IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARV 975
            IGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN ++ ISTP++  EL    +  AAR+
Sbjct: 1078 IGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASREISTPVVACELVNRGSTIAARI 1137

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIK 1035
            VKGRIEKT L  V  SI  V +   A + + L+ +TI+D  L I    + E+I    + K
Sbjct: 1138 VKGRIEKTFLQDVIHSITEVWSPDDAYLKVVLNWKTIEDLALEITTPQIVEAIKTNKRFK 1197

Query: 1036 -------LKQQHIKVLDFRKLEIFPP----VDKSKI-------HFELYSLKNVLPMVIVK 1077
                    K   IKV     +++ P     + K++I          L  LK +LP + + 
Sbjct: 1198 GGDLKFSCKHGSIKV----HMDLDPASKASLSKTEIAATSIDPFLRLKHLKRILPHIQIL 1253

Query: 1078 GIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEV 1137
            G     R +I   E                LLVEG GL+  M   G+DG  T++N+I E 
Sbjct: 1254 GHPRAARAIIRTDETSTTNT----------LLVEGYGLRECMTTMGVDGLHTRTNNIMEA 1303

Query: 1138 QQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKS 1197
            ++ LGIEAAR  I+ EI+E MK   M ID RHM LLAD+MT++GEVLGITRFG+ KM  S
Sbjct: 1304 REVLGIEAARSTIVVEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDS 1361

Query: 1198 VLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            VL LASFEKTADHLF+A   GR D IEGVSECIIMG  + LGTG +++
Sbjct: 1362 VLQLASFEKTADHLFDAGGLGRTDLIEGVSECIIMGKTVSLGTGAMEV 1409


>gi|121706250|ref|XP_001271388.1| DNA-directed RNA polymerase III largest subunit, putative
            [Aspergillus clavatus NRRL 1]
 gi|119399534|gb|EAW09962.1| DNA-directed RNA polymerase III largest subunit, putative
            [Aspergillus clavatus NRRL 1]
          Length = 1449

 Score = 1124 bits (2906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/1309 (46%), Positives = 836/1309 (63%), Gaps = 101/1309 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKV- 58
            MR P ++ LR+  + K I ++C     K   C  CG +NG+VKKA  + L I HD+ +  
Sbjct: 138  MRRPGLDNLRRLQIAKRINERCR----KTRTCETCGTVNGVVKKAGNSALKITHDKFRAF 193

Query: 59   --TESLQE--------FASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCE 104
              + S+++        F  +    + S A V      A   +N + VL LFK+++DTDCE
Sbjct: 194  NASTSVKKVPPPSKIVFDRSFDEARNSNAEVEKHYKKAQDDMNALRVLNLFKKISDTDCE 253

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP+ IRPSV  D + S E+D+T +L  I+Q+N +L+  L
Sbjct: 254  LLGLNPKEARPEMFLWQFIPAPPVCIRPSVGQDAA-STEDDLTAKLGDIVQSNINLKNSL 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
            ++       +  W+ +Q+++A YINSDV G+     + +P+ GFVQRLKGKQGRFRGNLS
Sbjct: 313  LKGAPVQTIMECWDYMQLQIAVYINSDVPGLN-KADLGKPIRGFVQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL++ EVA+P  +A+ +TYPE VS +N EKL+Q ++NG  K+PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVSRYNKEKLQQRVRNGTKKWPG 431

Query: 282  ARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  I  +  D    + YG   N +A +L+ G +++RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYIIKKGSDFKLFLKYGNL-NMIADQLQEGDVIERHIEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491  FAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++++ QDF++++++++ KD F+DR +F+ +C YM     R DLP P+ILKP  +WTGKQ
Sbjct: 551  PIISAIQDFISAAYVLSSKDNFFDRRSFTQICLYMLGPETRFDLPPPSILKPQMMWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F++L+RP+ +  V VNL    + Y       +  ++ R + + PNDG++  RNSE++ G
Sbjct: 611  VFNILMRPNKDDPVMVNLDAACREY-------KPPKDGRPKDLDPNDGWLVIRNSEVMCG 663

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K+T+G+G KD ++ ++LRDYG  A +  MNRL+KLSARW  N GFSIGI DV P + 
Sbjct: 664  VMDKSTIGSGKKDNVFYIMLRDYGPPAAAEGMNRLSKLSARWFTNMGFSIGITDVYPSEG 723

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K +L+   Y  C+  I +Y  G L+  PGCD  QT+E  ++ IL+++R+ AG  C+
Sbjct: 724  LVRSKNELVESAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQQAGDECI 783

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN+SQMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P
Sbjct: 784  AQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQP 843

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             +KGFV NSF+SGL  TEF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD+
Sbjct: 844  PSKGFVRNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDD 903

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +MEGK+ +P++FDR  +  ++      +R L P ++ E
Sbjct: 904  TVRNSSDAIVQFQYGDDLLDPVDMEGKA-KPVHFDRTFIHSESITYDNDERSLLPHEIME 962

Query: 820  IVEKQLAA----------------------YGKESCSEA--FLNSLRKFFEGQQDKLDKK 855
            + E+ L+                       +G +    A  FL+S++++   + DKL   
Sbjct: 963  VCEEMLSKERAKLVREDLMGNKLGYMDRSDHGIDQFESARDFLDSIQQYISTKADKL--- 1019

Query: 856  IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQS 915
                    +D   +  ++  + T  +TEK L  FI  C  +Y+  +VE G A+GA+GAQS
Sbjct: 1020 --ISRGGDFDPSDERSQKGLNHTGKLTEKTLRTFIAACLLKYKRAQVEPGHAVGAVGAQS 1077

Query: 916  IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARV 975
            IGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+I+ +L   DN  AAR+
Sbjct: 1078 IGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKAISTPVISCDLVTKDNVIAARI 1137

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIK 1035
            VKGRIEKT L  +   ++   T + A I + ++ ETIQ+  L +    +  +I    + K
Sbjct: 1138 VKGRIEKTFLRDIIHYVRETWTGKEAYITVKINWETIQNLALELKIHHIVAAIKNHKRFK 1197

Query: 1036 LKQQHIKVLDFRK----LEIFPPVD---------------KSKIHFELYSLKNVLPMVIV 1076
                    L FR     + I+  VD                S     L  LK +LP + V
Sbjct: 1198 ADD-----LKFRSSRSHIHIYMDVDPASKASLSKTEVAATSSDPFLRLKHLKRMLPDIQV 1252

Query: 1077 KGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFE 1136
             G     R +I          + +       LLVEG GL+  M   G++G  T SN++ E
Sbjct: 1253 LGHPQASRAII----------RTDDTSSTNTLLVEGYGLKECMTTLGVNGLHTYSNNVME 1302

Query: 1137 VQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDK 1196
            +++ LGIEAAR+ II EI+E MK   M ID RHM LLAD+MT++GEVLGITRFG+ KM  
Sbjct: 1303 MREVLGIEAARVTIIQEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRD 1360

Query: 1197 SVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            SVL LASFEKTADHLF+A   GR D IEGVSECIIMG  + LGTG +++
Sbjct: 1361 SVLQLASFEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTGAMEV 1409


>gi|385303556|gb|EIF47620.1| dna-directed rna polymerase iii largest subunit [Dekkera bruxellensis
            AWRI1499]
          Length = 1472

 Score = 1124 bits (2906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 615/1351 (45%), Positives = 846/1351 (62%), Gaps = 128/1351 (9%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAV------LGIIHD 54
            +R P ++ LRK   MK IVKK    A K  +C  CG +NG+VK+A A       L I+HD
Sbjct: 127  LRRPDIDNLRK---MK-IVKKVLDQAKKQRRCLVCGALNGVVKRAAAGGGGAAALKIVHD 182

Query: 55   RSKV---------TESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
              +          T    +F        + +         LNP+ VL LFK++T TDCE+
Sbjct: 183  SFRWVGKKGAEEKTRWNDDFQKYFRQNPDLERFYKRCYEDLNPLRVLNLFKQITPTDCEL 242

Query: 106  LYLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQ-SNENDITERLKRIIQTNASLQ-- 158
            L +      RPE  I   +  PP+ IRPSV+M  S  SNE+D+T +L  I+ T++ ++  
Sbjct: 243  LGIDPAKGGRPEMYIWRYLPAPPVCIRPSVMMGQSNTSNEDDLTVKLTEIVWTSSMIRAG 302

Query: 159  -QELVEANSAFKSLAGWETLQVEVAQYINSD------VRGVPFSMQVARPLSGFVQRLKG 211
             Q+ +  NS F+    W+ LQ+ VA YINSD      + G     + ++P+ GF QRLKG
Sbjct: 303  IQKGITLNSLFEQ---WDYLQLAVAMYINSDSVSPNLMPGSTGGSKSSKPIRGFCQRLKG 359

Query: 212  KQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQC 271
            KQGRFRGNLSGKRV+++ RTVISPDPNL++ +V  P  +A++LTYPERV+ +N  KL+  
Sbjct: 360  KQGRFRGNLSGKRVDFSARTVISPDPNLRVDQVCXPELVAKVLTYPERVTRYNKNKLQTL 419

Query: 272  IQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPS 330
            ++NGPD YPGA  +IR  +   R L    RN+LA  L  G +V+RHL +GD+VLFNRQPS
Sbjct: 420  VRNGPDLYPGANYLIRRNEDVKRNLRYGDRNKLAKTLSFGDVVERHLVEGDIVLFNRQPS 479

Query: 331  LHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQN 390
            LHR+SI+ H   +  WRT RFNE VC PYNADFDGDEMN+HVPQTEEAR EA  LMGV++
Sbjct: 480  LHRLSILAHYVTVKKWRTFRFNECVCAPYNADFDGDEMNLHVPQTEEARAEAATLMGVKS 539

Query: 391  NLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILK 450
            NL TPK+GE ++A+TQDF+T SFLIT KD+FYDRA F+ MC  M DG  + D+P P ILK
Sbjct: 540  NLLTPKSGEPIIAATQDFITGSFLITXKDSFYDRAVFTEMCVMMSDGATKFDVPPPTILK 599

Query: 451  PVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVY 510
            P  +WTGKQ++S+LIRP+   +V +N   K KT+   +   +G        M PNDG+V 
Sbjct: 600  PAYMWTGKQIYSLLIRPNHESKVLLNFDSKSKTF---IPPKDGLPN----EMSPNDGYVL 652

Query: 511  FRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIG 570
             RNS+L+SG + KA LG G K  L+  +LRDYGA   +  MNR+AKL+AR++G  GFSIG
Sbjct: 653  VRNSQLLSGVMDKALLGGGKKTSLFYTILRDYGADEAAKAMNRMAKLAARYMGEKGFSIG 712

Query: 571  IDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRI 630
            I+DV P + +  KK +++   Y+ C+  IK Y  GKL+ +PGC+  +TLEA I  +L+++
Sbjct: 713  INDVIPSEPVKQKKQEMVRIAYKKCDDLIKLYKSGKLETQPGCNEEETLEAKIGGLLSKV 772

Query: 631  REDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLP 690
            RE+ G+ C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF +R+LP
Sbjct: 773  REEVGEFCINELDPSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQNRTLP 832

Query: 691  HFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKAL 750
            HFP+ +K P +KGFV++SFYSGL+  EFFFH + GREGLVDTAVKTA+TGY SRRL+K++
Sbjct: 833  HFPKNSKTPQSKGFVSDSFYSGLNPPEFFFHAISGREGLVDTAVKTAETGYTSRRLMKSM 892

Query: 751  EDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQR 810
            EDLS QYD +VRN+G  IVQF YG DG+DP  MEG +  P+NF+R              +
Sbjct: 893  EDLSTQYDGTVRNSGDGIVQFRYGADGLDPMEMEGDA-VPVNFERTWEHCFFVTLNHSDK 951

Query: 811  YLSPQQVSEIV-------------------------EKQLAAYGKESCSEAFLNSLRKFF 845
             L P +V++IV                         E ++    K      F  S++KF 
Sbjct: 952  ALYPYEVTDIVNNTLNPLRDSLIRRDNLGKIVAKNXENKIEYVDKNDAKRNFYESIKKFV 1011

Query: 846  EGQQDKLDKKIKFVEDIGWDD-----KSQILEE------VTHKTSGITEKQLEVFIQTCF 894
               + K+    K  E    D      K++++        + +K   I+   ++ F+  C 
Sbjct: 1012 ---RKKVGVIAKMREGHSLDPMLIKPKNKVVTNKAVEXYLINKLQKISVPMIKKFLGLCL 1068

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            ++Y   RVE GTA+GA+GA SIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K 
Sbjct: 1069 TKYIKARVEPGTAVGAVGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKL 1128

Query: 955  ISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQD 1014
            ISTPII A L  + +E AARVVKGR+EKT L  V   I+ V     A + + +D++TI+ 
Sbjct: 1129 ISTPIIKAVLVNDKDERAARVVKGRVEKTTLEDVTYYIEDVYKESQAYLQVKIDLDTIEK 1188

Query: 1015 AHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP-------------------- 1054
              L +  D + ++IV+T K+K+ +    ++   K++I                       
Sbjct: 1189 LQLELTIDQIMDAIVKT-KLKIPRSCXSIVGKNKIQILVSEMGLENGKPSSRSTSSREIA 1247

Query: 1055 ------------VDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGE 1102
                        +++S + +++  LK  L  V+VKG+  V + VI         V+++G+
Sbjct: 1248 ALAKKDPDERDRLERSSLFYKMQQLKRQLTKVVVKGLPEVAKAVI--------NVRDDGK 1299

Query: 1103 KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHG 1162
            K+   LLVEG GL+ VM  +G+   KTK+NH+ E+   LGIEAAR  I+ EI+ TM++HG
Sbjct: 1300 KE---LLVEGYGLKDVMATDGVIATKTKTNHVIEIFHVLGIEAARSSIVSEIDYTMRSHG 1356

Query: 1163 MSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDR 1222
            M +D RH+ LLAD+MT++GE+LGITRFG+ KM  SV+ LASFEKT DHLF+A+   +DD+
Sbjct: 1357 MVVDPRHLQLLADVMTYKGEILGITRFGLAKMRDSVMQLASFEKTTDHLFDAAFYTKDDK 1416

Query: 1223 IEGVSECIIMGIPMPLGTGILKIRQRDAVPP 1253
            +EGVSE II+G  M +GTG  K+  ++ +PP
Sbjct: 1417 VEGVSERIILGQTMSIGTGSFKLSVQNNIPP 1447


>gi|158298044|ref|XP_318130.4| AGAP004703-PA [Anopheles gambiae str. PEST]
 gi|157014619|gb|EAA13195.5| AGAP004703-PA [Anopheles gambiae str. PEST]
          Length = 1379

 Score = 1124 bits (2906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/1265 (47%), Positives = 822/1265 (64%), Gaps = 58/1265 (4%)

Query: 3    NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD--RSK--- 57
            NP +  L K  +   ++KK    A K  KCP C  +NG VKK   ++ I+H+  R K   
Sbjct: 131  NPNLSYLAKKSIHSQVLKK----AKKNTKCPYCNSLNGPVKKGPGLMKIVHEPFRGKKPS 186

Query: 58   ---VTESLQEFASAITHTKESKAAVNVATYI---LNPVNVLFLFKRMTDTDCEVLYLSE- 110
               VT +L E  +A+   +E    V   + +   LN V VL LF+ +  +D  +L ++  
Sbjct: 187  DPLVTHALHEMQAAVESNRELAQTVVGPSSLSKELNAVEVLDLFRNIPKSDVPLLGMTST 246

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               P  LI+T + VPP+ IRPSV+ +  + + E+D+T +   I+  +  + + ++     
Sbjct: 247  YSNPADLIVTRVFVPPVCIRPSVVSEVKAGTTEDDLTMKQSEILLISDVITKHMMTNGKI 306

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                  W+ LQ+  A Y NS++ G+P S+   +P  G VQRLKGKQGRFRGNLSGKRV++
Sbjct: 307  ELIQEDWDYLQLHCALYFNSELSGIPLSLMPKKPTRGIVQRLKGKQGRFRGNLSGKRVDF 366

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY 287
            + RTVISPDPNL I +V +P R+A+ILT+PE+V+  NI ++RQ I+NG +K+PGA  ++ 
Sbjct: 367  SARTVISPDPNLMIHQVGVPDRVAKILTFPEKVNSANITRMRQLIRNGTEKHPGANYVQQ 426

Query: 288  PDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
                 +  + YG  R+++A +LK G IV+RHL DGDVVLFNRQPSLH++SIMCH A++ P
Sbjct: 427  KGSAFKKYLAYGN-RDKVAQDLKCGDIVERHLIDGDVVLFNRQPSLHKLSIMCHVAKVQP 485

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE  C PYNADFDGDEMN+H+PQTEEAR EAL+LMG ++NL TP+NGE+L+A+T
Sbjct: 486  QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALVLMGNKSNLVTPRNGELLIAAT 545

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR---VDLPTPAILKPVELWTGKQLFS 462
            QDF+T  +L+T+KD F        +   M  G D    +DLP PAILKP +LWTGKQ+FS
Sbjct: 546  QDFITGGYLLTQKDQFLTLEQVMQLAACMLSGPDSNMVIDLPRPAILKPRKLWTGKQIFS 605

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            ++++P++   V  NL  K + Y+            R   MC  D +V  RNS+L+ G + 
Sbjct: 606  LILKPNSQSCVNANLYTKGRNYT------------RDNDMCVKDSWVIIRNSQLLCGAMD 653

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G K+ ++ V+LRD+G       M RLA++++ ++ NHGFS GI DV P ++L +
Sbjct: 654  KGTLGSGTKNCIFYVILRDFGEEYAIKSMWRLARMASYFMMNHGFSFGIGDVTPSRKLLE 713

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
            +K KL+   Y  C+  I E  +G LQ +PGC A QTLEAV+   L+ IRE A KAC   L
Sbjct: 714  EKQKLLENGYRKCDEYIAEMKKGTLQCQPGCTAEQTLEAVMLKELSSIRELAAKACFREL 773

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NS LIM+Q GSKGS INISQM+ACVGQQ++ G+R PNGF DR+LPHF + +K PAA+
Sbjct: 774  HPTNSALIMAQSGSKGSNINISQMIACVGQQAINGKRVPNGFEDRALPHFEKFSKIPAAR 833

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFV NSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+K LEDL +QYD +VR
Sbjct: 834  GFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVQYDGTVR 893

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            NA G +V+F YG DG+DP  ME K+ +P++ +R  M V+   P   +  L  ++V    E
Sbjct: 894  NAIGEVVEFSYGADGLDPVYMEVKN-KPVDIERQFMHVRNMLPCRDEIPLRGEEVLSEGE 952

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
            + L+     +C + F      F E    K  +++  ++ + + +  ++  EV   T+G  
Sbjct: 953  RILSTPQFSNCRQDFRKECLDFLE----KFGRRLCTLQRL-YRNGPRVTTEVQRTTAG-- 1005

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              QLE F+    ++Y     E GTA+GA+ AQSIGEPGTQMTLKTFHFAGVASMNITQGV
Sbjct: 1006 --QLEEFLLQVRNKYNKAVTEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGV 1063

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRI EIIN  K ISTPIITAE+E N N   AR VK RIEKT LG+++  I+ V       
Sbjct: 1064 PRIVEIINATKAISTPIITAEIENNTNMEFARKVKARIEKTTLGEISSYIEEVYKMNECF 1123

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDK--SKI 1060
            ++I LD+  I+   L +NAD ++ SI  T K+KLKQ++++V     + I P   K    +
Sbjct: 1124 LLIKLDLGRIRVLGLEVNADTIRYSIC-TSKLKLKQENVEVYGPSLIIIRPDSSKHSHSL 1182

Query: 1061 HFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMG 1120
            + EL  L   +P V+V G+  V R VIA        V ++    KYRL VEG GL+ VMG
Sbjct: 1183 NAELQRLITAIPNVVVAGLPQVSRAVIA--------VDDSRGTPKYRLCVEGCGLRDVMG 1234

Query: 1121 AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFR 1180
              G+ G +TKSN+I EV QTLGIEAAR  I+ EI E M+ HGMS+D RH+MLL+  MT R
Sbjct: 1235 TYGVIGNRTKSNNILEVYQTLGIEAARTTIMTEITEVMEGHGMSVDHRHIMLLSGQMTSR 1294

Query: 1181 GEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
            GEVLGITR G+ KM +SV  LASFEKTADHLF+A+  G+ D ++GVSE II+G+P  +GT
Sbjct: 1295 GEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDSVDGVSERIILGMPASIGT 1354

Query: 1241 GILKI 1245
            G+ K+
Sbjct: 1355 GLFKL 1359


>gi|342886359|gb|EGU86224.1| hypothetical protein FOXB_03263 [Fusarium oxysporum Fo5176]
          Length = 1404

 Score = 1123 bits (2905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/1299 (45%), Positives = 825/1299 (63%), Gaps = 69/1299 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----S 56
            +R P ++ LR+T + K I ++C  + +    CP CG +NG ++K + VL + HD+    +
Sbjct: 91   LRRPFLDNLRRTQICKKINEQCRKIKT----CPYCGSLNGQIRK-IGVLKLAHDKFVAYN 145

Query: 57   KVT-------ESLQEFASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCEV 105
            K T       ES  +F ++    K     ++     A   LNP+ VL LFK ++ TDCE+
Sbjct: 146  KSTAAKKVPPESKIKFDNSFNEAKRENPELDKHLRKAMEDLNPLRVLNLFKMISPTDCEL 205

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L     RPE  I   +  PP+ IRPSV  D + SNE+DIT +L  I+  +  ++  L 
Sbjct: 206  LGLDPAEGRPEMFIWQFLPAPPVCIRPSVAQDNA-SNEDDITTKLADIVWVSGMIRSALQ 264

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            + +     +  WE LQ ++A Y+NSDV G+       +   GF QRLKGKQGRFRGNLSG
Sbjct: 265  KGSPVQTIMEQWEYLQTQIAMYVNSDVPGLQ-QPGFGKATRGFCQRLKGKQGRFRGNLSG 323

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I +VA+P  +A+ LTYPERV  HN+EKLRQC++NGPD +PGA
Sbjct: 324  KRVDFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVQRHNLEKLRQCVKNGPDIWPGA 383

Query: 283  RMIRYPDGTARVLYGKFRNQ--LAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
            + +   D    +   KF N+  +A +LK G IV+RHLED D+VLFNRQPSLH++SIM H 
Sbjct: 384  QRVIKSDEGGYLQSLKFGNREYIARDLKFGDIVERHLEDNDIVLFNRQPSLHKLSIMSHL 443

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
            A++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMG+++NL TPKNGE 
Sbjct: 444  AKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEAINLMGIKHNLATPKNGEP 503

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A+TQDF+T++FL++ KD F+DR  F+ +C +M DG   +D+P PAI+ P  LWTGKQL
Sbjct: 504  VIAATQDFITAAFLLSSKDRFFDRKTFTYLCMHMMDGKTHLDMPPPAIIAPQSLWTGKQL 563

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            FS+L+RP+ +  V VNL  K + Y  +          +   M PNDG++  RNSE++ G+
Sbjct: 564  FSMLMRPNKDSPVKVNLDAKCRAYKAR--------PGQCPDMDPNDGWLVVRNSEVMCGR 615

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + K+T+G G KD ++ V+LRD+G       MNRLAKL AR + N GFSIG+ DV P + L
Sbjct: 616  MDKSTVGTGKKDSIFYVILRDFGPDEAVIAMNRLAKLCARQLTNRGFSIGVGDVFPTESL 675

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
            + +K KL++  Y+ C+  I+ +  GKL+   GC+  QTLE  ++ IL+++R+ AG  C+ 
Sbjct: 676  NKEKEKLVAVAYKQCDDLIETFKAGKLEKAAGCNQEQTLENSMSGILSKVRQQAGSYCVD 735

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
            +L   N+PLIM++ GSKGS IN++QMVA VGQQ +GG R  +GF DR+LPHF + A++P 
Sbjct: 736  TLSRNNAPLIMAKSGSKGSDINVAQMVALVGQQIIGGSRVADGFQDRTLPHFHKNARQPP 795

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSFY+GL  TEF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD++
Sbjct: 796  SKGFVKNSFYTGLFPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDT 855

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEI 820
            VR +GG IVQF +G D +DP +MEG S EP++F R     ++      +  ++P+++   
Sbjct: 856  VRTSGGGIVQFQFGADKLDPVDMEG-SAEPVHFQRTWTHAESLTVDNSETSMTPEEIRSF 914

Query: 821  VEKQLAA-----------------YGKES--------CSEAFLNSLRKFFEGQQDKLDKK 855
             +K L                   YG  S         +  FL ++ +  EG   KL+  
Sbjct: 915  CDKVLETERRRYVRRGLLHNEILDYGDTSDYGIDEHEGARGFLKAIERHVEGLASKLETV 974

Query: 856  IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQS 915
             K     G        ++   +T+ +T   L +FI+ C  +Y+   VE G A+GA+GA S
Sbjct: 975  RKLAGFKGGAMVRSTAQDHADRTAKVTLSTLRLFIKMCLEKYKKAHVEPGHAVGAVGAHS 1034

Query: 916  IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARV 975
            IGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT  LE N+   AARV
Sbjct: 1035 IGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKAISTPVITCPLENNEQIEAARV 1094

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIK 1035
            VKGRIEKT +  V + ++    +   ++V+ +D   + D HL I    + E+I +  K+K
Sbjct: 1095 VKGRIEKTYISDVLRFVEDEWRTTEGNVVLQIDSAALSDMHLGIGPYDIAEAICKQRKLK 1154

Query: 1036 LKQQHIKV----LDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGI--KTVERVVIAE 1089
            +++  + +    +  R  ++  P  K        +      M++      +++  V I+ 
Sbjct: 1155 VQRDDLSIDGERIIVRVRDVTDPATKRTTARSKAAAAETGDMLLRANFLRRSLPNVPISG 1214

Query: 1090 KEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARIC 1149
              +  R + +  E+  + +LVEG GL+  M  EG+ G K ++N++ E +  LGIEAAR  
Sbjct: 1215 YPEATRAIIQTSEQSTHTVLVEGYGLRECMTTEGVIGTKARTNNVMECRDVLGIEAARTT 1274

Query: 1150 IIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTAD 1209
            I DEI E M    M ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LASFEKT D
Sbjct: 1275 IADEIGEVMG--DMGIDPRHMQLLADVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTPD 1332

Query: 1210 HLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            HLF A+   + D+IEGVSECIIMG  M +GTG  ++ +R
Sbjct: 1333 HLFEAAAGMKTDQIEGVSECIIMGQTMSVGTGAFQVVRR 1371


>gi|383861274|ref|XP_003706111.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
            [Megachile rotundata]
          Length = 2015

 Score = 1121 bits (2900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/1267 (47%), Positives = 823/1267 (64%), Gaps = 58/1267 (4%)

Query: 3    NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK----- 57
            NP +  L +  L K I++K    A K   C  CG +NG VKKA  +L I+H++ K     
Sbjct: 762  NPNLGYLTRKALRKQILEK----AKKTTVCQNCGDLNGTVKKA-GLLKIVHEKYKAKKKI 816

Query: 58   ---VTESLQEFASAITHTKESKAAV-NVATYILNPVNVLF---LFKRMTDTDCEVLYLSE 110
               V + L E+ + +   K  +  + N    ILNP+ V     + +++ ++D  +L ++ 
Sbjct: 817  DAIVQQKLAEYNNVLEDNKALEGILQNGLVNILNPLEVKVVQSILEKIPESDIPLLMMNP 876

Query: 111  R---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANS 166
                P+ LI+T I VPPI IRPSV+ D  + + E+ +T +L  I+  N  +Q+       
Sbjct: 877  ECALPKDLILTRIPVPPICIRPSVVSDLKAGTTEDHLTMKLSEIVFINDVIQKHRQSGAK 936

Query: 167  AFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVE 226
                   WE LQ+  A YINS++ G+P +MQ  +   G VQRLKGKQGRFRGNLSGKRV+
Sbjct: 937  VQMYNEDWEFLQLHCALYINSEMSGIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVD 996

Query: 227  YTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIR 286
            ++ RTVISPDPNL+I +V +PI +A+ILTYPERV+  NIE +R+ ++NGPD +PGA  I+
Sbjct: 997  FSSRTVISPDPNLRIEQVGVPIHVAKILTYPERVNPSNIELMRKLVRNGPDVHPGANFIQ 1056

Query: 287  YPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIM 344
                  +  + YG  R ++A +L+ G IV+RHL D DVVLFNRQPSLH++SIM H+A+++
Sbjct: 1057 QGKTQFKKYLRYGN-RQKIAQDLQYGDIVERHLRDDDVVLFNRQPSLHKLSIMAHKAKVL 1115

Query: 345  PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAS 404
              RT RFNE VC PYNADFDGDEMN+H+PQTEEAR EAL+LMG ++NL TP+NGE+L+A+
Sbjct: 1116 EHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALVLMGNKSNLVTPRNGELLIAA 1175

Query: 405  TQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLF 461
            TQDF+T  +L+T+KD F +++  S +   +  G+D    +DLP PAILKP  LWTGKQ+F
Sbjct: 1176 TQDFITGGYLLTQKDMFLNKSQASQLAGCLLAGLDIAMSIDLPEPAILKPTVLWTGKQIF 1235

Query: 462  SVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQL 521
            S++++P+    +  NL  K + Y+              E +C ND +V  RNSEL++G +
Sbjct: 1236 SLILKPNKMCNIRANLKTKGRAYTTN------------EELCINDSYVIIRNSELLAGSM 1283

Query: 522  GKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELS 581
             K+TLG+G+K  ++ +LLRD+G    +  M RLA++++ ++ N GFSIGI DV P + L 
Sbjct: 1284 DKSTLGSGSKQNIFYILLRDWGEDIATTAMWRLARMASFFLMNRGFSIGIGDVTPGQGLL 1343

Query: 582  DKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGS 641
              K +L+   Y  C   I +  EG+L  +PGC   +TLEA+I   L+ IR+ AGKAC+  
Sbjct: 1344 KAKQELLHAGYSKCTEYIHQMEEGRLVCQPGCTEEETLEAMILKELSVIRDHAGKACLKE 1403

Query: 642  LPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAA 701
            L   NSPL+M+  GSKGS INISQM+ACVGQQ++ G R PNGF DR+LPHF R +K PAA
Sbjct: 1404 LHPSNSPLVMALSGSKGSFINISQMIACVGQQAISGHRVPNGFEDRALPHFERHSKIPAA 1463

Query: 702  KGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSV 761
            KGFV NSFYSGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K+LEDL + YD +V
Sbjct: 1464 KGFVENSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCLHYDMTV 1523

Query: 762  RNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIV 821
            RN+ G IVQ LYG D +DP  MEGK   P+++ R+L  V+A  P   ++ L    V    
Sbjct: 1524 RNSVGDIVQILYGGDALDPTYMEGKDC-PVDYKRVLDHVRAKSPCKNEQSLDGPSVITAT 1582

Query: 822  EKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGI 881
             + L++   E  S+ F   L  F +     + +KI  +      +   IL+        +
Sbjct: 1583 NELLSSEEYECLSKEFKQELATFLKS----IARKIARLRHNAPSNIPVILQ-----LERL 1633

Query: 882  TEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQG 941
            T  QL  FI  C  +Y   ++E GTA+GA+ AQSIGEPGTQMTLKTFHFAGVASMNITQG
Sbjct: 1634 TVSQLVEFIHICKEKYMRAKIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQG 1693

Query: 942  VPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLA 1001
            VPRIKEIIN   +ISTPIITA LE + +   AR VKGRIEKT LG+V + I  V      
Sbjct: 1694 VPRIKEIINANPKISTPIITAALENDVDPEYARRVKGRIEKTTLGEVTEYIDEVYLPDDC 1753

Query: 1002 SIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIH 1061
             ++I LD++ I+   L ++ + ++ SI  T K+KL  + + V     + + P  +K  I+
Sbjct: 1754 FLLIKLDIDRIKLLKLEVDVNSIRYSIC-TSKLKLNPKLVNVRGDSIITVSPNKNKYSIN 1812

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  +P ++VKG+ +V R VI           ++  K +Y+L VEG  ++ VM  
Sbjct: 1813 YALTQLKETIPNIVVKGLPSVSRAVIHN--------DDSSGKTRYKLFVEGDNMREVMAT 1864

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G KT SN+  EV +TLGIEAAR  I+ EI   M+ HGMSID+RH ML+ADLMT RG
Sbjct: 1865 LGVSGKKTTSNNTIEVFKTLGIEAARATIMTEIKLVMENHGMSIDRRHPMLVADLMTSRG 1924

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITR G+ KM +SVL LASFEKTADHLF+A+  G+ D I GVSE IIMGIP+PLGTG
Sbjct: 1925 EVLGITRQGLAKMKESVLNLASFEKTADHLFDAAYYGQKDVICGVSESIIMGIPVPLGTG 1984

Query: 1242 ILKIRQR 1248
            I K+  +
Sbjct: 1985 IFKLLHK 1991


>gi|322702047|gb|EFY93795.1| DNA-directed RNA polymerase III [Metarhizium acridum CQMa 102]
          Length = 1447

 Score = 1121 bits (2899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/1321 (46%), Positives = 831/1321 (62%), Gaps = 104/1321 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----S 56
            +R P M+ LR+T + K I ++C     K+  CP CG +NG ++K + VL + HD+    +
Sbjct: 135  LRRP-MDNLRRTQICKRINEQCR----KSRTCPYCGSVNGQIRK-IGVLKLTHDKFSFYN 188

Query: 57   KVT-------ESLQEFASAITHTK----ESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
            K T       ES  +F  + +  K    E +  +  A   LNP+ VL LFK ++ TDCE+
Sbjct: 189  KSTAAKKVPPESKVKFDDSFSEAKRENPELEKHLRKAMEDLNPLRVLNLFKMISPTDCEL 248

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L     RPE  I   +  PP+ IRPSV  D + SNE+D+T +L  I+  +  ++  L 
Sbjct: 249  LGLDPAEGRPEMFIWQFVPAPPVCIRPSVAQDNA-SNEDDLTTKLADIVWVSGMIRSALQ 307

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            + +     +  WE LQ ++A Y+NSDV G+       +   GF QRLKGKQGRFRGNLSG
Sbjct: 308  KGSPIQTIMEQWEYLQTQIAMYVNSDVPGLQ-QPGFGKSTRGFCQRLKGKQGRFRGNLSG 366

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I +VA+P  +A+ LTYPE+V+  NIEKLRQC++NG D +PGA
Sbjct: 367  KRVDFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPEKVNRQNIEKLRQCVRNGCDVWPGA 426

Query: 283  RMIRYPDGTARVLYGKF------RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSI 336
            + I   +  +   Y KF      R+  A +L  G IV+RHLEDGDVVLFNRQPSLH++SI
Sbjct: 427  QGILKKEDDS---YYKFNLRFGNRDLAAKQLSYGDIVERHLEDGDVVLFNRQPSLHKLSI 483

Query: 337  MCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPK 396
            M H A+I PWRT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+ NL TPK
Sbjct: 484  MSHLAKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAINLMGVKYNLATPK 543

Query: 397  NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWT 456
            NGE ++A+TQDF+T++FL++ KD F+DR +FS +C +M +   ++++P PAI+ P  LWT
Sbjct: 544  NGEPIIAATQDFITAAFLLSSKDRFFDRKSFSYICMHMMEQGTKIEIPPPAIVAPKALWT 603

Query: 457  GKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSEL 516
            GKQ+FS+++RP+ +  V +NL  K + Y  +          +   M PNDG++  RNSE+
Sbjct: 604  GKQIFSIMMRPNKDCSVKINLDAKCRAYKAR--------PGQCPDMDPNDGWLVVRNSEV 655

Query: 517  ISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQP 576
            + G++ K+T+G+G KD ++ V+LRD+G       MNRLAKL AR + N GFSIG+ DV P
Sbjct: 656  MCGRMDKSTVGSGKKDSIFYVILRDFGPDEAVIAMNRLAKLCARALTNRGFSIGVGDVFP 715

Query: 577  KKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGK 636
             + L+ +K  L+S  Y++C+  I+ + +GKL   PGC+  QTLE  I+ IL+++R+ AG 
Sbjct: 716  TETLNVEKENLVSTAYKMCDDLIETFKQGKLDKAPGCNMEQTLENSISGILSKVRQQAGS 775

Query: 637  ACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKA 696
             C+ +L   N+PLIM+Q GSKGS IN++QMVA VGQQ +GG+R P+GF DRSLPHF + A
Sbjct: 776  YCIDTLSRNNAPLIMAQSGSKGSDINVAQMVAVVGQQIIGGQRVPDGFQDRSLPHFHKNA 835

Query: 697  KEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
            ++P +KGFV NSFY+GL  TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS Q
Sbjct: 836  RQPPSKGFVKNSFYTGLFPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQ 895

Query: 757  YDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQ 816
            YD++VR +GG IVQF +G D +DP +MEG S EP+NF R     +       +  ++P +
Sbjct: 896  YDDTVRTSGGGIVQFQFGADKLDPVDMEG-SAEPVNFKRTWSHAETLTWDNDEAAMTPSE 954

Query: 817  VSEIVEKQLA-----------AYGKE--------------SCSEAFLNSLRKFFEGQQDK 851
            +    +  LA           AYG++                +  FL ++    EG   K
Sbjct: 955  IRAFCDSMLAVERKRFPRHGLAYGEKLDYEDTTDYGIDEHEGARRFLKTIENHVEGLASK 1014

Query: 852  LDKKIKFVEDIGWDDKSQI---LEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAI 908
            L+K  K     G+D    +    ++   +T+ +T   L +FI+ C  +Y+   VE G A+
Sbjct: 1015 LEKVRKLA---GFDGDKMLRATAQDHADRTAKVTATTLRLFIKMCLEKYKKAHVEPGHAV 1071

Query: 909  GAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECND 968
            GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT  L  + 
Sbjct: 1072 GAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKNISTPVITCPLMNDK 1131

Query: 969  NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESI 1028
               AARVVKGRIEKT +  V   ++        ++V+ +D   + D HL I    + ESI
Sbjct: 1132 QIEAARVVKGRIEKTYISDVLHFVEDEWRPGEGNVVLQIDRSALSDLHLGIGIYDIAESI 1191

Query: 1029 VQTPKIKLKQQHIKV--------------LDFRKLEIFPPV--DKSKIHFELYSLKNVLP 1072
             +  K+K+ ++ + V              +  RK     P   D   +      L+  LP
Sbjct: 1192 CKQRKLKIPREDLSVYGERIVIRVRDASDMPARKTTRTKPALEDSGDMLLRANFLRRALP 1251

Query: 1073 MVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSN 1132
             V + G     R +I           +  E+  + +LVEG GL+  M  EG+ G KT+SN
Sbjct: 1252 HVPISGYSEATRAII-----------QTSEQNTHTVLVEGYGLRECMTTEGVLGTKTRSN 1300

Query: 1133 HIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQ 1192
            ++ E +  LGIEAAR  I DEI++ M    M ID RHM LLAD+MT++GEVLGITRFG+ 
Sbjct: 1301 NVMECRDVLGIEAARTTIADEISQVMG--DMGIDPRHMQLLADVMTYKGEVLGITRFGLS 1358

Query: 1193 KMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAVP 1252
            KM  SVL LASFEKT DHLF A+   + D+IEGVSECIIMG  M +GTG  ++ +R  + 
Sbjct: 1359 KMRDSVLQLASFEKTPDHLFEAAAGMKTDQIEGVSECIIMGQTMAVGTGAFQVVRRLGIR 1418

Query: 1253 P 1253
            P
Sbjct: 1419 P 1419


>gi|405121486|gb|AFR96255.1| DNA-directed RNA polymerase III largest subunit [Cryptococcus
            neoformans var. grubii H99]
          Length = 1437

 Score = 1121 bits (2899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/1321 (46%), Positives = 817/1321 (61%), Gaps = 133/1321 (10%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVT- 59
             R P +E+L++    K+++  C     K   C  CG  NG+VKK+   L I H+  +   
Sbjct: 139  FRRPNLESLQRQSAAKAVLAACK----KQNICTYCGAPNGIVKKS-GPLRISHEPYRAAK 193

Query: 60   ------ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE--- 110
                  E +  F +A+   +     ++ A   LNP+ VL LF+R+T  DCE+L L     
Sbjct: 194  MASMKDEWMATFKNAVAENQAVATHLSKAVDDLNPLKVLNLFERITAEDCELLSLHPDVG 253

Query: 111  RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
            RPE  I   I+VPP  IRPSV  +   +NE+D+T +L  I+  N +L   +         
Sbjct: 254  RPEDYIWQYISVPPPCIRPSVASEAG-NNEDDLTAKLAEIVNYNNTLALMMDLGRGIEMI 312

Query: 171  LAGWETLQVEVAQYINSDVRGVPFSMQV--ARPLSGFVQRLKGKQGRFRGNLSGKRVEYT 228
             + WE L   VA YINS   G    MQ   ++P+ GFVQRLKGKQGRFRGNLSGKRV+++
Sbjct: 313  SSNWEVLGQAVALYINSQAPG----MQTIGSKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 368

Query: 229  GRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI--R 286
            GRTVI PDPNL+I EVA+P ++A  L+YPERV+D+NI+ +RQ I NG   +PGA ++  +
Sbjct: 369  GRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNIQLMRQAIINGSKLHPGANVLERK 428

Query: 287  YPDG-TARVLYG-----KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
            + +G T R+        + R + A EL+ G +V RH+ DGD+VLFNRQPSLH++SIMCHR
Sbjct: 429  HENGSTVRISLNVMKDLEARKRYARELQIGDVVHRHVRDGDIVLFNRQPSLHKLSIMCHR 488

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
             R+ PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEAL LM V+ NL TP+NGE 
Sbjct: 489  VRVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMSVKKNLVTPRNGEP 548

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A+ QDF+T+++L++R+D FYDR  F+ +  Y+GD   ++++P P I KPV LWTGKQ+
Sbjct: 549  IIAAIQDFITAAYLLSRRDRFYDRQQFTQIASYLGDANLKIEMPPPTIWKPVRLWTGKQI 608

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            F++L+RP+   +V VNL  K +T  +        E+     M PNDG++  +NSE++ G 
Sbjct: 609  FNLLMRPNKESKVLVNLEAKCRTLVDP-----AKEDRFPPDMSPNDGYLVIQNSEIMCGV 663

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
              K T+G+G K+ ++ V+LRDYG    +  MNRLAK++ARW+ N GFS+GI+DV P   L
Sbjct: 664  FDKNTVGDGKKNSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLGINDVIPGPIL 723

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
               K   + + Y+ C+V I    +GKL+  PGCD   TLE+ I+  L+ +RE  GK CM 
Sbjct: 724  HASKDARVEKAYDECDVFIDLAKKGKLENAPGCDQEATLESKISKTLSDVREAVGKICMQ 783

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
             L   N+PLIM+ CGSKGS IN++QMVACVGQQ +GG R  NGF DRSLPHF +K+K P 
Sbjct: 784  ELSRHNAPLIMATCGSKGSVINVAQMVACVGQQIIGGSRVRNGFQDRSLPHFRKKSKNPP 843

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSF+SGL+  EF FH M GREGLVDTAVKTA+TGYM+RRL+KALEDL   YD S
Sbjct: 844  SKGFVRNSFFSGLTPPEFLFHAMSGREGLVDTAVKTAETGYMARRLMKALEDLCTHYDLS 903

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQ--RYLSPQQVS 818
            VRN+ G IVQF YGDD +DPA +EG +  P+ + R        C  AG   R L P +V 
Sbjct: 904  VRNSVGGIVQFQYGDDMLDPACLEGDA-TPVEYVRSWTH---ACRTAGNQGRALYPYEVR 959

Query: 819  EIVEK--------------QLAAYGK--------------------ESCSEAFLNSLRKF 844
             I  +                   G+                    E C   F  +  KF
Sbjct: 960  RIAARIYPESFVPPSFPSSPPKTKGRRRKEPTPPPPVVAPTLPKEWEGCHHKFRENTYKF 1019

Query: 845  FEGQ------QDKLDKKIKFVEDIGWDDKSQIL--------EEVTHKTSGITEKQLEVFI 890
               +        +L + +   +D+   ++ + L        + V    + +TE QL  F+
Sbjct: 1020 VVDKIVKQMVDQRLARGLPDADDVEMAEEYEALLNSDDLAVQRVLENANKVTEAQLSSFL 1079

Query: 891  QTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN 950
            + C  RY   ++E G+ +GA+GAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN
Sbjct: 1080 ENCRIRYLRAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 1139

Query: 951  GAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDME 1010
             AK ISTPII AEL   ++E AAR+VKGRIEKT+LG                     D+E
Sbjct: 1140 AAKVISTPIIAAELAIPESETAARIVKGRIEKTVLG---------------------DLE 1178

Query: 1011 TIQDAHLCINADIVKESIVQTPKIKLKQQ--HIKVLDFRKLEIFPPVDKSK---IHFELY 1065
                    I+ + +K ++V+  K+K+ +   HI     R        DK K   I+  L 
Sbjct: 1179 --------ISLESIKWALVRANKLKIPEGSIHISQKTSRIRIWIDESDKDKGVGIYERLK 1230

Query: 1066 SLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGID 1125
             LK  +P V VKG+  +ER V+ + EK +         K +RLLV G GL  VMG EG+D
Sbjct: 1231 FLKRAIPSVQVKGLPAIERGVVTKDEKNE---------KIHRLLVTGYGLSEVMGTEGVD 1281

Query: 1126 GCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLG 1185
            G KTK+NH+ E QQ LGIEAAR  I +EI  TMK+HGMSID RH+MLL D+MT++GEVLG
Sbjct: 1282 GLKTKTNHVMETQQVLGIEAARSTIYNEIQTTMKSHGMSIDPRHVMLLGDVMTYKGEVLG 1341

Query: 1186 ITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP-LGTGILK 1244
            ITRFG+QKM  SVLMLASFEKT DHLF+AS+  + D I+GVSECIIMG P P  GT +  
Sbjct: 1342 ITRFGVQKMKDSVLMLASFEKTTDHLFDASLYSKKDEIQGVSECIIMGTPAPGCGTSLAS 1401

Query: 1245 I 1245
            I
Sbjct: 1402 I 1402


>gi|346324489|gb|EGX94086.1| DNA-directed RNA polymerase III [Cordyceps militaris CM01]
          Length = 1486

 Score = 1120 bits (2898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/1306 (46%), Positives = 818/1306 (62%), Gaps = 87/1306 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----S 56
            +R P ++ LR+T + K I ++C     K   C  CG +NG ++K   VL ++HD+    +
Sbjct: 180  LRRPFIDNLRRTQICKRINEQCR----KTKNCAYCGSVNGQIRK-FGVLKLVHDKFASFN 234

Query: 57   KVT-------ESLQEFASAITHTK----ESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
            K T       ES   F ++ T  K    E +  +  A   LNP+ VL LFK +T TDCE+
Sbjct: 235  KSTAIKKVPPESKVLFEASFTEAKRENPELEKHLRKAMEDLNPLRVLNLFKMITATDCEL 294

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L+    RPE  I   +  PP+ IRPSV  D + SNE+DIT +L  I+  +  ++  L 
Sbjct: 295  LGLNAAEGRPEMFIWQFLPAPPVCIRPSVAQDNA-SNEDDITTKLADIVWVSGMIRSALQ 353

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            + ++    +  WE LQ ++A Y+NSDV G+       + + GF QRLKGKQGRFRGNLSG
Sbjct: 354  KGSAIQTIMEQWEYLQTQIAMYVNSDVPGLQ-QPGFGKAMRGFCQRLKGKQGRFRGNLSG 412

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I EVAIP  +A+ LTYPERV   N+ KLRQC+ NG D +PGA
Sbjct: 413  KRVDFSGRTVISPDPNLGIDEVAIPQLVAKNLTYPERVQRQNMAKLRQCVTNGCDVWPGA 472

Query: 283  RMIRYPDGTARVLYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
            + +   D     +  KF  RN +A +L+ G +V+RH+EDGD+VLFNRQPSLH++SIM H 
Sbjct: 473  QSVIKMDEGGYKINLKFGNRNMVARDLRIGDVVERHIEDGDIVLFNRQPSLHKLSIMSHL 532

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
            A+I PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEA+ LMGV++NL TPK+G  
Sbjct: 533  AKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAITLMGVRHNLTTPKDGAP 592

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++ +TQDF+T++FL++ KD F+DR  F+ MC +M D   R+DLP P I+ PV LWTGKQL
Sbjct: 593  IIGATQDFITAAFLLSSKDRFFDRKTFTYMCMHMLDSQTRLDLPPPTIIAPVALWTGKQL 652

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            F+V++RP+    + +N   K KT+S K           I  M PNDG++  RNSE++ G 
Sbjct: 653  FNVMMRPNKESNIRINFESKCKTFSGK--------SKNIPDMDPNDGWLVVRNSEVMCGV 704

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + KAT+G G KD ++ V+LRD+GA   +  MNRLA+L AR + N GFSIG+ DV P   L
Sbjct: 705  MDKATVGTGKKDSVFYVMLRDFGADHAATAMNRLARLCARTLTNRGFSIGVGDVCPTGSL 764

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
            + +  +L+S  Y+  +  I+ +  GKL+  PGC+  QTLE  I+ IL+R+R+ AG  C+ 
Sbjct: 765  TAETERLVSIAYKQSDDLIESFKAGKLEKAPGCNLEQTLENSISGILSRVRQQAGDYCVD 824

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
            +L   N+PLIM++ GSKGS IN++QMVA VGQQ +GG+R P+GF DRSLPHF + A++P 
Sbjct: 825  TLSRNNAPLIMAKSGSKGSDINVAQMVALVGQQIIGGQRVPDGFQDRSLPHFFKNARQPP 884

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSFY+GL  TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD++
Sbjct: 885  SKGFVKNSFYTGLYPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDT 944

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEI 820
            VR +GG +VQF +G D +DP +MEG SG P+ F R     + T     +  L+P +  E+
Sbjct: 945  VRTSGGTVVQFQFGGDRLDPVDMEG-SGAPVQFVRTWRHAENTTWDNEEVALTPNEAREL 1003

Query: 821  VEKQLA-------------------------AYGKESCSEAFLNSLRKFFEGQQDKLDKK 855
                LA                         A  +   +  F+  ++ F     DKL++ 
Sbjct: 1004 CGNMLASERNRFPRKGLLHGEDLAYTDVSDYAVDEHEGARKFITEVKDFVGALADKLERV 1063

Query: 856  IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQS 915
                   G D      ++   +T+ IT   L +FI+ C  +Y+  +VE G A+GA+GAQS
Sbjct: 1064 RALAGLAGKDKTGSAAQDHADRTAKITATTLRLFIKLCLHKYKKAQVEPGHAVGAVGAQS 1123

Query: 916  IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARV 975
            IGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT  L  N    AA+V
Sbjct: 1124 IGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKAISTPVITCPLMNNQQIEAAKV 1183

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIK 1035
            VK RIEK  L  V + ++        ++V+ +D + + D HL I+   + ++I +  K+K
Sbjct: 1184 VKARIEKIFLQDVLQYVEDEWRPDEGNVVVQVDRQVLADMHLGIDIQDIAQAICKDRKMK 1243

Query: 1036 LKQQHIKVLDFR-KLEIFPPV------------DKSKIHFELYSLKNVLPMVIVKGIKTV 1082
            ++   + ++  R  + +   +            D S +     +L+ +LP + + G    
Sbjct: 1244 IQATDVAIIGDRISIRVHDNIGAKRTTRSKTGEDTSDMLLRANALRRMLPALPISGYPNA 1303

Query: 1083 ERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLG 1142
             R +I           E  E   +R+LVEG G QA M  EG+ G K ++N + E  + LG
Sbjct: 1304 SRALI-----------ETCEDSTHRVLVEGYGYQACMTTEGVIGTKVRTNSVTECNEVLG 1352

Query: 1143 IEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLA 1202
            IEAAR  I  EI + MK   M ID RHM LLAD MTF+GE+LGITRFG+ KM  SVL LA
Sbjct: 1353 IEAARTTIAFEIEQVMKF--MEIDHRHMQLLADAMTFKGEILGITRFGLSKMRDSVLHLA 1410

Query: 1203 SFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            SFEKT DHLF A+   + D+IEGVSE IIMG  M +GTG  ++ +R
Sbjct: 1411 SFEKTPDHLFEAAAGMKTDKIEGVSEGIIMGQGMAVGTGAFQVVRR 1456


>gi|340711859|ref|XP_003394485.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Bombus
            terrestris]
          Length = 1385

 Score = 1120 bits (2896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/1276 (47%), Positives = 826/1276 (64%), Gaps = 62/1276 (4%)

Query: 3    NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK----- 57
            NP +  L +  L K I+ K    A K   C  C  +NG VKKA  +L I+H++ K     
Sbjct: 131  NPNLGYLTRKALRKQILDK----AKKTTVCQYCRDLNGTVKKA-GLLKIVHEKYKGKKKI 185

Query: 58   ---VTESLQEFASAITHTKESKAAVNVA-TYILNPVNVLFLFKRMTDTDCEVLYLSER-- 111
               V + L E+ + +   K  +  +      +LNP+ V  + +++ ++D  +L ++    
Sbjct: 186  DAIVQQKLAEYNNVLEDNKALEGVLQSGLVNVLNPLEVQSILEKIPESDIPLLLMNSECA 245

Query: 112  -PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             P+ LI+T I VPPI IRPSV+ D  + + E+ +T +L  I+  N  +Q+          
Sbjct: 246  LPKDLILTRIPVPPICIRPSVVSDLKAGTTEDHLTMKLSEIVFINDVIQKHRQSGAKVQM 305

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
                WE LQ+  A YINS++ G+P +MQ  +   G VQRLKGKQGRFRGNLSGKRV+++ 
Sbjct: 306  YNEDWEFLQLHCALYINSEMSGIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDFSS 365

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
            RTVISPDPNL+I +V +PI +A+ILTYPERV+  NIE +R+ ++NGPD +PGA  I+   
Sbjct: 366  RTVISPDPNLRIEQVGVPIHVAKILTYPERVNPSNIELMRKLVRNGPDIHPGANFIQ--- 422

Query: 290  GTARVLYGKF-----RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIM 344
               +  + KF     R ++A +L+ G IV+RHL D DVVLFNRQPSLH++SIM H+A+++
Sbjct: 423  -QGKTQFKKFLKYGNRQKIAQDLQYGDIVERHLRDDDVVLFNRQPSLHKLSIMAHKAKVL 481

Query: 345  PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAS 404
              RT RFNE VC PYNADFDGDEMN+H+PQTEEAR EAL+LMG ++NL TP+NGE+L+A+
Sbjct: 482  DHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALILMGNKSNLVTPRNGELLIAA 541

Query: 405  TQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLF 461
            TQDF+T  +L+T+KD F ++A  S +   +  G D    + LP PAILKP  LWTGKQ+F
Sbjct: 542  TQDFITGGYLLTQKDMFLNKAQASQLAGCLLAGPDIAMSISLPEPAILKPSMLWTGKQIF 601

Query: 462  SVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQL 521
            S++++P++   +  NL  K + Y++             + +C ND +V  RNSEL++G +
Sbjct: 602  SLILKPNSTCNIKANLKTKGRAYTSN------------QELCINDSYVIIRNSELLAGTM 649

Query: 522  GKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELS 581
             K+TLG+G+K  ++ +LLRD+G    +  M RLA++++ ++ N GFSIGI DV P + L 
Sbjct: 650  DKSTLGSGSKQNIFYILLRDWGEDIATIAMWRLARMASFFLMNRGFSIGIGDVTPGQGLL 709

Query: 582  DKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGS 641
              K KL++  Y  C   I +  EG+L  +PGC   +TLEA+I   L+ IR+ AGKAC+  
Sbjct: 710  KAKEKLLNAGYSKCTEYICQMEEGRLVCQPGCSEEETLEAMILKELSVIRDHAGKACLKE 769

Query: 642  LPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAA 701
            L   NSPLIM+  GSKGS INISQM+ACVGQQ++ G R PNGF DR+LPHF R +K PAA
Sbjct: 770  LHPSNSPLIMALSGSKGSFINISQMIACVGQQAISGHRVPNGFEDRALPHFERHSKIPAA 829

Query: 702  KGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSV 761
            KGFV NSFYSGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K+LEDL + YD +V
Sbjct: 830  KGFVENSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCLHYDMTV 889

Query: 762  RNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIV 821
            RN+ G I+Q LYG DG+DP  MEGK   P+++ R+L  V A  P   +  L    + +  
Sbjct: 890  RNSVGDIIQILYGGDGLDPTYMEGKDC-PVDYKRVLDHVTAKSPCKNEEPLDGPDLIKAT 948

Query: 822  EKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGI 881
             + L +   E  SE F   L  F +G   K       +  + ++  S I   V  +   +
Sbjct: 949  NELLGSKDCECLSEEFKQELSTFLKGVARK-------IIHLRYNAPSNI--PVIFQLERL 999

Query: 882  TEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQG 941
            T  QL  FI TC  +Y   ++E GTA+GA+ AQSIGEPGTQMTLKTFHFAGVASMNITQG
Sbjct: 1000 TVSQLVEFIHTCKEKYMKAKIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQG 1059

Query: 942  VPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLA 1001
            VPRIKEIIN   +ISTPII+A LE + +   AR VKGRIEKT LG+V + I+ V      
Sbjct: 1060 VPRIKEIINANPKISTPIISAALENDVDPEYARRVKGRIEKTTLGEVTEYIEEVYLPDDC 1119

Query: 1002 SIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIH 1061
             +++ LD++ I+   L ++ + ++ SI  T K++L  + + V     + + P   K  I+
Sbjct: 1120 FLLVKLDIDRIKLLKLEVDVNSIRYSIC-TSKLRLNPKLVNVRGDSIITVNPSKSKYSIN 1178

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  +P +++KG+ +V R VI           ++  K +Y+L VEG  ++ VM  
Sbjct: 1179 YALTQLKETIPNIVIKGLPSVSRAVIHN--------DDSSGKTRYKLFVEGNNMREVMAT 1230

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G KT SN+  EV +TLGIEAAR  I+ EI   M+ HGMSID+RH ML+ADLMT RG
Sbjct: 1231 LGVLGRKTTSNNTIEVFKTLGIEAARATIMTEIKLVMENHGMSIDRRHPMLVADLMTSRG 1290

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITR G+ KM +SVL LASFEKT+DHLF+A+  G+ D I GVSE IIMGIP+P+GTG
Sbjct: 1291 EVLGITRQGLAKMKESVLNLASFEKTSDHLFDAAYYGQKDVICGVSESIIMGIPVPVGTG 1350

Query: 1242 ILKIRQR-DAVPPMLK 1256
            I K+  + D   P +K
Sbjct: 1351 IFKLLHKADKDEPRIK 1366


>gi|328790760|ref|XP_003251457.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like, partial
            [Apis mellifera]
          Length = 1374

 Score = 1119 bits (2895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/1264 (47%), Positives = 821/1264 (64%), Gaps = 55/1264 (4%)

Query: 3    NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK----- 57
            NP +  L +  L K I+ K    A K   C  CG +NG VKKA  +L I+H++ K     
Sbjct: 131  NPNLGYLTRKALRKQILDK----AKKTSVCQNCGDLNGTVKKA-GLLKIVHEKYKAKKKV 185

Query: 58   ---VTESLQEFASAITHTKESKAAVNVA-TYILNPVNVLFLFKRMTDTDCEVLYLSER-- 111
               V + L E+ + +   K  +  +      +LNP+ V  + +++ + D  +L ++    
Sbjct: 186  DVIVQQKLAEYNNVLEENKALEGILQSGLVNVLNPLEVQSILEKIPENDIPLLMMNTECA 245

Query: 112  -PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             P+ LI+T I VPPI IRPSV+ D  + + E+ +T +L  I+  N  +Q+          
Sbjct: 246  LPKDLILTRIPVPPICIRPSVVSDIKAGTTEDHLTMKLSEIVFINDVIQKHRQSGAKVQM 305

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
                WE LQ+  A YINS++ G+P +MQ  +   G VQRLKGKQGRFRGNLSGKRV+++ 
Sbjct: 306  YSEDWEFLQLHCALYINSEMSGIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDFSS 365

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
            RTVISPDPNL+I +V +PI +A+ILTYPE+V+  NIE +R+ ++NGPD +PGA  I+   
Sbjct: 366  RTVISPDPNLRIEQVGVPIHVAKILTYPEKVNPSNIELMRKLVRNGPDIHPGANFIQQGK 425

Query: 290  GTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
               +  + YG  R ++A +L+ G IV+RHL D DVVLFNRQPSLH++SIM H+A+I+  R
Sbjct: 426  TQFKKYLRYGN-RQKIAQDLQYGDIVERHLRDDDVVLFNRQPSLHKLSIMAHKAKILDHR 484

Query: 348  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQD 407
            T RFNE VC PYNADFDGDEMN+HVPQTEEAR EAL+LMG ++NL TP+NGE+L+A+TQD
Sbjct: 485  TFRFNECVCTPYNADFDGDEMNLHVPQTEEARAEALVLMGNKSNLVTPRNGELLIAATQD 544

Query: 408  FLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFSVL 464
            F+T  +L+T+KD F ++   S +   +  G D    ++LP PAILKP  LWTGKQ+FS++
Sbjct: 545  FITGGYLLTQKDMFLNKTQASQLAGCLLAGPDIAMSINLPEPAILKPTTLWTGKQIFSLI 604

Query: 465  IRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKA 524
            ++P+    +  NL  K + Y+              E +C ND +V  RNSEL++G + K+
Sbjct: 605  LKPNNTCNIKANLKTKGRAYTTN------------EELCINDSYVIIRNSELLAGSMDKS 652

Query: 525  TLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKK 584
            TLG+G+K  ++ +LLRD+G    +  M RLA++++ ++ N GFSIGI DV P + L   K
Sbjct: 653  TLGSGSKQNIFYILLRDWGEDIATIAMWRLARMASFFLMNRGFSIGIGDVTPGQGLLKAK 712

Query: 585  GKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW 644
             +L++  Y  C   I++  EG+L  +PGC   +TLEA+I   L+ IR+ AGKAC+  L  
Sbjct: 713  QELLNAGYSKCTEYIQDMEEGRLICQPGCTEEETLEAMILKELSVIRDHAGKACLKELHP 772

Query: 645  RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 704
             NSPLIM+  GSKGS INISQM+ACVGQQ++ G R PNGF DR+LPHF R +K PAAKGF
Sbjct: 773  SNSPLIMALSGSKGSFINISQMIACVGQQAISGHRVPNGFEDRALPHFERHSKIPAAKGF 832

Query: 705  VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
            V NSFYSGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K+LEDL + YD +VRN+
Sbjct: 833  VENSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCLHYDMTVRNS 892

Query: 765  GGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQ 824
             G IVQ LYG D +DP  MEGK   P+++ R+L  V+A  P   +  L    V +   + 
Sbjct: 893  VGDIVQILYGGDALDPTYMEGKDC-PVDYKRILDHVRAKSPCKNEESLDGHSVIKATNEL 951

Query: 825  LAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEK 884
            L +   E  SE F   L  F +    K+ +             + +   V  +   +T  
Sbjct: 952  LNSEEYECLSEEFKQELSTFLKSVARKIAR---------LRHNAALNVPVILQLERLTVS 1002

Query: 885  QLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 944
            QL  FI TC  +Y   ++E GTA+GA+ AQSIGEPGTQMTLKTFHFAGVASMNITQGVPR
Sbjct: 1003 QLVEFIHTCKEKYMRAKIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 1062

Query: 945  IKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIV 1004
            IKEIIN + +ISTPIITA L  + +   AR VKGRIEKT LG+V + I+ V       ++
Sbjct: 1063 IKEIINASPKISTPIITAALINDADPEYARRVKGRIEKTTLGEVTEYIEEVYLPDDCFLL 1122

Query: 1005 IALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFEL 1064
            I +D++ I+   L ++ + ++ SI  T K++L  + + V     + + P  +K  +++ L
Sbjct: 1123 IKIDIDRIKLLKLEVDVNSIRYSIC-TSKLRLNPKLVNVRGDSIITVNPSKNKYSLNYAL 1181

Query: 1065 YSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGI 1124
              LK ++P +++KG+ +V R VI           ++  KKKY+L VEG  ++ VM   G+
Sbjct: 1182 TQLKELIPNIVIKGLPSVSRAVIHN--------DDSCGKKKYKLFVEGDNMRDVMATLGV 1233

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
             G KT SN+  EV +TLGIEAAR  I+ EI   M+ HGMSID+RH ML+ADLMT RGEVL
Sbjct: 1234 LGKKTTSNNTIEVFKTLGIEAARATIMTEIKLVMENHGMSIDRRHPMLVADLMTSRGEVL 1293

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
            GITR G+ KM +SVL LASFEKT+DHLF+A+  G+ D I GVSE IIMGIP+P+GTGI K
Sbjct: 1294 GITRQGLAKMKESVLNLASFEKTSDHLFDAAYYGQKDVICGVSESIIMGIPVPVGTGIFK 1353

Query: 1245 IRQR 1248
            +  +
Sbjct: 1354 LLHK 1357


>gi|46136689|ref|XP_390036.1| hypothetical protein FG09860.1 [Gibberella zeae PH-1]
          Length = 2443

 Score = 1119 bits (2895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/1315 (45%), Positives = 827/1315 (62%), Gaps = 101/1315 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----S 56
            +R P ++ LR+T + K I ++C     K   CP CG +NG ++K + VL + HD+    +
Sbjct: 1130 LRRPFLDNLRRTQICKRINEQCR----KVKTCPYCGSLNGQIRK-IGVLKLAHDKFVAYN 1184

Query: 57   KVT-------ESLQEFASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCEV 105
            K T       ES  +F ++    K     ++     A   LNP+ VL LFK ++ TDCE+
Sbjct: 1185 KSTSIKKTPPESKIKFDNSFNEAKRENPELDKHLRKAMEDLNPLRVLNLFKMISPTDCEL 1244

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L     RPE  I   +  PP+ IRPSV  D + SNE+DIT +L  I+  +  ++  L 
Sbjct: 1245 LGLDPAEGRPEMFIWQFLPAPPVCIRPSVAQDNA-SNEDDITTKLADIVWVSGMIRSALQ 1303

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGV--PFSMQVARPLSGFVQRLKGKQGRFRGNL 220
            + +     +  WE LQ ++A Y+NSDV G+  P   +  R   GF QRLKGKQGRFRGNL
Sbjct: 1304 KGSPVQTIMEQWEYLQTQIAMYVNSDVPGLQQPGFGKTTR---GFCQRLKGKQGRFRGNL 1360

Query: 221  SGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYP 280
            SGKRV+++GRTVISPDPNL I +VA+P  +A+ LTYPERV  HNIEKLRQC++NGPD +P
Sbjct: 1361 SGKRVDFSGRTVISPDPNLGIDQVAVPELVAKNLTYPERVQRHNIEKLRQCVKNGPDVWP 1420

Query: 281  GARMIRYPDGTARVLYGKFRNQ--LAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMC 338
            GA+ +   D    +   KF N+  +A +LK G IV+RHLED D+VLFNRQPSLH++SIM 
Sbjct: 1421 GAQRVIKSDEGGYLQSLKFGNREYIARDLKFGDIVERHLEDNDIVLFNRQPSLHKLSIMS 1480

Query: 339  HRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNG 398
            H A++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMG+++NL TPKNG
Sbjct: 1481 HLAKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEAINLMGIKHNLATPKNG 1540

Query: 399  EILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGK 458
            E ++A+TQDF+T+++L++ KD F+DR  F+ +C +M DG   +DLP PAI+ P  LWTGK
Sbjct: 1541 EPVIAATQDFITAAYLLSGKDRFFDRKTFTYLCMHMMDGKTHLDLPPPAIIAPQSLWTGK 1600

Query: 459  QLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELIS 518
            QLF +L+RP+ +  V VNL  K KTY  +          +   M PNDG++  RNSE++ 
Sbjct: 1601 QLFGMLMRPNKDSPVKVNLDAKCKTYKAR--------PGQCPDMDPNDGWLVVRNSEVMC 1652

Query: 519  GQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKK 578
            G++ K+T+G+G KD ++ V+LRD+G       MNRLAKL AR + NHGFSIGI DV P +
Sbjct: 1653 GRMDKSTVGDGKKDSIFYVILRDFGPDEAVTAMNRLAKLCARQLTNHGFSIGIGDVFPPE 1712

Query: 579  ELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKAC 638
             L  +K +L +  Y+ C+  I+ +  GKL+   GC+  Q+LE  ++ IL+++R+ AG  C
Sbjct: 1713 SLIQEKERLAAAAYKQCDDLIETFKAGKLEKAAGCNQEQSLENFMSGILSKVRQQAGSYC 1772

Query: 639  MGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKE 698
            + +L   N+PL+M++ GSKGS +N++QMVA VGQQ +GG R  +GF DR+LPHF + A++
Sbjct: 1773 VETLSRNNAPLVMAKSGSKGSDLNVAQMVALVGQQIIGGARVADGFQDRTLPHFHKNARQ 1832

Query: 699  PAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYD 758
            P +KGFV NSFYSGLS TEF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD
Sbjct: 1833 PPSKGFVKNSFYSGLSPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYD 1892

Query: 759  NSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVS 818
            ++VR +GG IVQF +G D +DP +MEG S  P++F+R     ++      +  ++P ++ 
Sbjct: 1893 DTVRTSGGGIVQFQFGADKLDPVDMEG-SAAPVHFERTWTHAQSLTVDNTETSMTPDEIR 1951

Query: 819  EIVEKQL-----------------------AAYG--KESCSEAFLNSLRKFFEGQQDKLD 853
               + +L                       + YG  +   +  FL ++ +  E    KL+
Sbjct: 1952 SFCDSKLEHERRRYVRKGLLGGEVLDYEDTSDYGIDEHEGARGFLKAIERHVEALASKLE 2011

Query: 854  KKIKFVEDIGWDDKSQI---LEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGA 910
            +  K     G++    I    ++   +T+ +T   L++FI+ C  +Y+   VE G A+GA
Sbjct: 2012 RVRKLA---GFEGDRMIRPTAQDHADRTAKVTLSTLQLFIKLCLEKYKKAHVEPGHAVGA 2068

Query: 911  IGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNE 970
            +GA SIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT  LE N+  
Sbjct: 2069 VGAHSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKAISTPVITCPLENNEQI 2128

Query: 971  NAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQ 1030
             AARVVKGRIEKT +  + + ++    +   ++V+ +D   + D HL I    + E+I +
Sbjct: 2129 EAARVVKGRIEKTYISDILRFVEDEWRTTEGNVVLQIDPTALSDMHLGIGPYDIAEAICK 2188

Query: 1031 TPKIKLKQQHIKV----LDFRKLEIFPPVDK-------------SKIHFELYSLKNVLPM 1073
              K+K+++  + +    +  R  +I  P  K               +      L+  LP 
Sbjct: 2189 QRKLKVQRDDLSIDGDRIIVRVRDISDPAAKRTATRSKAAAAESGDMLLRANFLRRALPN 2248

Query: 1074 VIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNH 1133
            V + G     R +I           +  E+  + +LVEG GL+  M  EG+ G K  SN+
Sbjct: 2249 VPISGYSEATRAII-----------QTSEQNTHTVLVEGYGLRECMTTEGVIGTKASSNN 2297

Query: 1134 IFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQK 1193
            + E +  LGIEAAR  I  EI   M    M+ID RHM LLAD+MT++GEVLGITRFG+ K
Sbjct: 2298 VMECRDVLGIEAARTTIAVEIGSVMG--DMNIDPRHMQLLADVMTYKGEVLGITRFGLSK 2355

Query: 1194 MDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            M  SVL LASFEKT DHLF A+   + D+IEGVSECIIMG  M +GTG  ++ +R
Sbjct: 2356 MRDSVLQLASFEKTPDHLFEAAAGMKTDQIEGVSECIIMGQTMSVGTGAFQVVRR 2410


>gi|302914119|ref|XP_003051073.1| hypothetical protein NECHADRAFT_41824 [Nectria haematococca mpVI
            77-13-4]
 gi|256732011|gb|EEU45360.1| hypothetical protein NECHADRAFT_41824 [Nectria haematococca mpVI
            77-13-4]
          Length = 1449

 Score = 1119 bits (2894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1309 (45%), Positives = 824/1309 (62%), Gaps = 90/1309 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----S 56
            +R P ++ LR+T + K I  +C  + +    CP CG ING ++K + VL + HD+    +
Sbjct: 137  LRRPFLDNLRRTQICKKINAECRKIKT----CPYCGSINGQIRK-IGVLKLAHDKFSFYN 191

Query: 57   KVT-------ESLQEFASAITHTK----ESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
            K T       ES  +F ++ T  K    E    +  A   LNP+ VL LFK ++ TDCE+
Sbjct: 192  KSTSVKKVPPESKIKFDNSFTEAKRENPELDKHLRKAMEDLNPLRVLNLFKMISPTDCEL 251

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L     RPE  I   +  PP+ IRPSV  D + SNE+DIT +L  I+  +  ++  L 
Sbjct: 252  LGLDPAEGRPEMFIWQFLPAPPVCIRPSVAQDNA-SNEDDITTKLADIVWVSGMIRSALQ 310

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            + +     +  WE LQ ++A Y+NSDV G+       +   GF QRLKGKQGRFRGNLSG
Sbjct: 311  KGSPVQTIMEQWEYLQTQIAMYVNSDVPGLQ-QPGFGKATRGFCQRLKGKQGRFRGNLSG 369

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I +VA+P  +A+ LTYPERV  HNIEKLRQCI+NG D +PGA
Sbjct: 370  KRVDFSGRTVISPDPNLGIDQVAVPELVAKNLTYPERVQRHNIEKLRQCIKNGVDVWPGA 429

Query: 283  -RMIRYPDGTARV-LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
             R+++  DG   + L    R+  + +LK G +V+RHLED D+VLFNRQPSLH++SIM H 
Sbjct: 430  QRVVKQDDGGYSINLKFANRDNTSRDLKYGDVVERHLEDNDIVLFNRQPSLHKLSIMSHL 489

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
            A++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMG+++NL TPKNGE 
Sbjct: 490  AKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEAINLMGIKHNLATPKNGEP 549

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A+TQDF+T++FL++ KD F+DR  F+ +C +M DG   +D+P PAI+ P  LWTGKQL
Sbjct: 550  VIAATQDFITAAFLLSSKDRFFDRKTFTYLCMHMMDGKTHLDMPPPAIIAPQALWTGKQL 609

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            FS+L+RP+ + +V VNL  K + Y  +          +   M PNDG++  RNSE++ G+
Sbjct: 610  FSMLMRPNKDSKVKVNLDAKCRAYKAR--------PGQCPDMDPNDGWLVVRNSEVMCGR 661

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + K+T+G+G KD ++ V+LRD+G       MNRLAKL AR + N GFSIG+ DV P + L
Sbjct: 662  MDKSTVGSGKKDSIFYVILRDFGPDEAVIAMNRLAKLCARQLTNRGFSIGVGDVFPTQSL 721

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
            +D+K KL++  Y+ C+  I+ +  GKL+   GC+  QTLE  ++ IL+++R+ AG  C+ 
Sbjct: 722  NDEKEKLVAVAYKQCDDLIETFKAGKLEKAAGCNQEQTLENSMSGILSKVRQQAGSYCVD 781

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
            +L   N+PLIM++ GSKGS IN++QMVA VGQQ +GG R  +GF DR+LPHF + A++P 
Sbjct: 782  TLSRNNAPLIMAKSGSKGSDINVAQMVALVGQQIIGGSRVADGFQDRTLPHFHKNARQPP 841

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSFY+GL  TEF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD++
Sbjct: 842  SKGFVKNSFYTGLFPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDT 901

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE- 819
            VR +GG IVQF +G D +DP +MEG S EP++F R     ++      +  ++P+++   
Sbjct: 902  VRTSGGGIVQFQFGADKLDPVDMEG-SAEPVHFLRTWTHAESLTRDNSEASMTPEEIRSF 960

Query: 820  ----------------IVEKQLAAYGKES--------CSEAFLNSLRKFFEGQQDKLDKK 855
                            ++  ++  YG  S         +  FL ++    EG   KL++ 
Sbjct: 961  CDTVLETERKRYVRRGLLHNEVLDYGDTSDYGIDEHEGARGFLKAIETHVEGLASKLERV 1020

Query: 856  IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQS 915
             K     G        ++   +T+ +T   L +FI+ C  +Y+   VE G A+GA+GA S
Sbjct: 1021 RKLAGFEGDVMVRATAQDHADRTAKVTLSTLRLFIKMCLDKYKKAHVEPGHAVGAVGAHS 1080

Query: 916  IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARV 975
            IGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT  LE N+   AARV
Sbjct: 1081 IGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKTISTPVITCPLENNEQIEAARV 1140

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIK 1035
            VKGRIEKT +  V + ++    +   ++V+ +D   + D HL I    + E+I +  K+K
Sbjct: 1141 VKGRIEKTYISDVLRFVEDEWRTNEGNVVLQIDSTALSDMHLGIGPYDIAEAICKQRKLK 1200

Query: 1036 LKQQHIKVLDFRKLEIFPPV----------------DKSKIHFELYSLKNVLPMVIVKGI 1079
            +++  + +   R +     V                D   +      L+  LP V + G 
Sbjct: 1201 VQRDDLSIDGERIIVRVRDVSDSTKRTTARSKAAADDTGDMLLRANFLRRALPTVPISGY 1260

Query: 1080 KTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQ 1139
                R +I           +  E+  + +LVEG GL+  M  EG+ G K +SN++ E + 
Sbjct: 1261 SEATRAII-----------QTSEQNTHTVLVEGYGLRECMTTEGVIGIKARSNNVMECRD 1309

Query: 1140 TLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVL 1199
             LGIEAAR  I  EI E M    M ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL
Sbjct: 1310 VLGIEAARTTIAAEIGEVMG--DMGIDPRHMQLLADVMTYKGEVLGITRFGLSKMRDSVL 1367

Query: 1200 MLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
             LASFEKT DHLF A+   + D+IEGVSECIIMG  M +GTG  ++ +R
Sbjct: 1368 QLASFEKTPDHLFEAAAGMKTDQIEGVSECIIMGQTMRVGTGAFQVVRR 1416


>gi|322704718|gb|EFY96310.1| DNA-directed RNA polymerase III [Metarhizium anisopliae ARSEF 23]
          Length = 1447

 Score = 1119 bits (2894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/1321 (45%), Positives = 831/1321 (62%), Gaps = 104/1321 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----S 56
            +R P M+ LR+T + K I ++C     K+  CP CG +NG ++K + VL + HD+    +
Sbjct: 135  LRRP-MDNLRRTQICKRINEQCR----KSKTCPYCGSVNGQIRK-IGVLKLTHDKFSFYN 188

Query: 57   KVT-------ESLQEFASAITHTK----ESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
            K T       ES  +F  + +  K    E +  +  A   LNP+ VL LFK ++ TDCE+
Sbjct: 189  KSTAAKKVPPESKVKFDDSFSEAKRENPELEKHLRKAMEDLNPLRVLNLFKMISPTDCEL 248

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L     RPE  I   +  PP+ IRPSV  D + SNE+D+T +L  I+  +  ++  L 
Sbjct: 249  LGLDPAEGRPEMFIWQFVPAPPVCIRPSVAQDNA-SNEDDLTTKLADIVWVSGMIRSALQ 307

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            + +     +  WE LQ ++A Y+NSDV G+       +   GF QRLKGKQGRFRGNLSG
Sbjct: 308  KGSPIQTIMEQWEYLQTQIAMYVNSDVPGLQ-QPGFGKSTRGFCQRLKGKQGRFRGNLSG 366

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I +VA+P  +A+ LTYPE+V+  NIEKLRQC++NG D +PGA
Sbjct: 367  KRVDFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPEKVNRQNIEKLRQCVRNGCDVWPGA 426

Query: 283  RMIRYPDGTARVLYGKF------RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSI 336
            + I   +  +   Y KF      R+  A +L  G IV+RHLEDGDVVLFNRQPSLH++SI
Sbjct: 427  QGILKKEDDS---YYKFNLRFGNRDLAAKQLSYGDIVERHLEDGDVVLFNRQPSLHKLSI 483

Query: 337  MCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPK 396
            M H A+I PWRT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+ NL TPK
Sbjct: 484  MSHLAKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAINLMGVKYNLATPK 543

Query: 397  NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWT 456
            NGE ++A+TQDF+T++FL++ KD F+DR +FS +C +M +   ++++P PAI+ P  LWT
Sbjct: 544  NGEPIIAATQDFITAAFLLSSKDRFFDRKSFSYICMHMMEQGTKIEIPPPAIVAPKALWT 603

Query: 457  GKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSEL 516
            GKQ+FS+++RP+ +  V +NL  K + Y  +          +   M PNDG++  RNSE+
Sbjct: 604  GKQIFSIMMRPNKDCSVKINLDAKCRAYKAR--------PGQCPDMDPNDGWLVVRNSEV 655

Query: 517  ISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQP 576
            + G++ K+T+G+G KD ++ V+LRD+G       MNRLAKL AR + N GFSIG+ DV P
Sbjct: 656  MCGRMDKSTVGSGKKDSIFYVILRDFGPDEAVIAMNRLAKLCARALTNRGFSIGVGDVFP 715

Query: 577  KKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGK 636
             + L+ +K  L+S  Y++C+  I+ + +GKL   PGC+  QTLE  I+ IL+++R+ AG 
Sbjct: 716  TETLNVEKENLVSTAYKMCDDLIETFKQGKLDKAPGCNMEQTLENSISGILSKVRQQAGS 775

Query: 637  ACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKA 696
             C+ +L   N+PLIM+Q GSKGS IN++QMVA VGQQ +GG+R P+GF DRSLPHF + A
Sbjct: 776  YCIDTLSRNNAPLIMAQSGSKGSDINVAQMVAVVGQQIIGGQRVPDGFQDRSLPHFHKNA 835

Query: 697  KEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
            ++P +KGFV NSFY+GL  TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS Q
Sbjct: 836  RQPPSKGFVKNSFYTGLFPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQ 895

Query: 757  YDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQ 816
            YD++VR +GG IVQF +G D +DP +MEG S EP+NF R     +       +  ++P +
Sbjct: 896  YDDTVRTSGGGIVQFQFGADKLDPVDMEG-SAEPVNFKRTWSHAETLTWDNEEAAMTPSE 954

Query: 817  VSEIVEKQLA-----------AYGKE--------------SCSEAFLNSLRKFFEGQQDK 851
            +    +  LA           AYG++                +  FL ++    EG   K
Sbjct: 955  IRAFCDSMLAVERKRFPRHGLAYGEKLDYEDTTDYGIDEHEGARRFLKTIENHVEGLASK 1014

Query: 852  LDKKIKFVEDIGWDDKSQI---LEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAI 908
            L+K  K     G+D    +    ++   +T+ +T   L +FI+ C  +Y+   VE G A+
Sbjct: 1015 LEKVRKLA---GFDGDKMLRATAQDHADRTAKVTATTLRLFIKMCLEKYKKAHVEPGHAV 1071

Query: 909  GAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECND 968
            GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT  L  + 
Sbjct: 1072 GAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKNISTPVITCPLMNDK 1131

Query: 969  NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESI 1028
               AARVVKGRIEKT +  V   ++        ++V+ +D   + D HL I    + ESI
Sbjct: 1132 QIEAARVVKGRIEKTYISDVLHFVEDEWRPDEGNVVLQIDRSALSDLHLGIGIYDIAESI 1191

Query: 1029 VQTPKIKLKQQHIKV--------------LDFRKLEIFPPV--DKSKIHFELYSLKNVLP 1072
             +  K+K+ ++ + V              +  RK     P   D   +      L+  LP
Sbjct: 1192 CKQRKLKIPREDLSVYGERIVIRVRDASDMPARKTTRTKPALEDSGDMLLRANFLRRALP 1251

Query: 1073 MVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSN 1132
             V + G     R +I           +  E+  + +LVEG GL+  M  EG+ G +T+SN
Sbjct: 1252 HVPISGYSEATRAII-----------QTSEQNTHTVLVEGYGLRECMTTEGVIGTQTRSN 1300

Query: 1133 HIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQ 1192
            ++ E +  LGIEAAR  I DEI++ M    M ID RHM LLAD+MT++GEVLGITRFG+ 
Sbjct: 1301 NVMECRDVLGIEAARSTIADEISQVMG--DMGIDPRHMQLLADVMTYKGEVLGITRFGLS 1358

Query: 1193 KMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAVP 1252
            KM  SVL LASFEKT DHLF A+   + D+IEGVSECIIMG  M +GTG  ++ +R  + 
Sbjct: 1359 KMRDSVLQLASFEKTPDHLFEAAAGMKTDQIEGVSECIIMGQTMAVGTGAFQVVRRLGIR 1418

Query: 1253 P 1253
            P
Sbjct: 1419 P 1419


>gi|350402598|ref|XP_003486538.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Bombus
            impatiens]
          Length = 1385

 Score = 1119 bits (2894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/1276 (47%), Positives = 826/1276 (64%), Gaps = 62/1276 (4%)

Query: 3    NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK----- 57
            NP +  L +  L K I+ K    A K   C  C  +NG VKKA  +L I+H++ K     
Sbjct: 131  NPNLGYLTRKALRKQILDK----AKKTTVCQHCRDLNGTVKKA-GLLKIVHEKYKGKKKI 185

Query: 58   ---VTESLQEFASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYLSER-- 111
               V + L E+ + +   K  +  +      +LNP+ V  + +++ ++D  +L ++    
Sbjct: 186  DAIVQQKLAEYNNVLEDNKALEGVLQTGLISVLNPLEVQSILEKIPESDIPLLLMNSEYA 245

Query: 112  -PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             P+ LI+T I VPPI IRPSV+ D  + + E+ +T +L  I+  N  +Q+          
Sbjct: 246  LPKDLILTRIPVPPICIRPSVVSDLKAGTTEDHLTMKLSEIVFINDVIQKHRQSGAKVQM 305

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
                WE LQ+  A YINS++ G+P +MQ  +   G VQRLKGKQGRFRGNLSGKRV+++ 
Sbjct: 306  YNEDWEFLQLHCALYINSEMSGIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDFSS 365

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
            RTVISPDPNL+I +V +PI +A+ILTYPERV+  NIE +R+ ++NGPD +PGA  I+   
Sbjct: 366  RTVISPDPNLRIEQVGVPIHVAKILTYPERVNPSNIELMRKLVRNGPDIHPGANFIQ--- 422

Query: 290  GTARVLYGKF-----RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIM 344
               +  + KF     R ++A +L+ G IV+RHL D DVVLFNRQPSLH++SIM H+A+++
Sbjct: 423  -QGKTQFKKFLKYGNRQKIAQDLQYGDIVERHLRDDDVVLFNRQPSLHKLSIMAHKAKVL 481

Query: 345  PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAS 404
              RT RFNE VC PYNADFDGDEMN+H+PQTEEAR EAL+LMG ++NL TP+NGE+L+A+
Sbjct: 482  DHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALILMGNKSNLVTPRNGELLIAA 541

Query: 405  TQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLF 461
            TQDF+T  +L+T+KD F ++A  S +   +  G D    + LP PAILKP  LWTGKQ+F
Sbjct: 542  TQDFITGGYLLTQKDMFLNKAQASQLAGCLLAGPDIAMSITLPEPAILKPSMLWTGKQIF 601

Query: 462  SVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQL 521
            S++++P++   +  NL  K + Y++             + +C ND +V  RNSEL++G +
Sbjct: 602  SLILKPNSTCNIKANLKTKGRAYTSN------------QELCINDSYVIIRNSELLAGTM 649

Query: 522  GKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELS 581
             K+TLG+G+K  ++ +LLRD+G    +  M RLA++++ ++ N GFSIGI DV P + L 
Sbjct: 650  DKSTLGSGSKQNIFYILLRDWGEDIATIAMWRLARMASFFLMNRGFSIGIGDVTPGQGLL 709

Query: 582  DKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGS 641
              K KL++  Y  C   I++  EG+L  +PGC   +TLEA+I   L+ IR+ AGKAC+  
Sbjct: 710  KAKEKLLNAGYSKCTEYIRQMEEGRLVCQPGCSEEETLEAMILKELSVIRDHAGKACLKE 769

Query: 642  LPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAA 701
            L   NSPLIM+  GSKGS INISQM+ACVGQQ++ G R PNGF DR+LPHF R +K PAA
Sbjct: 770  LHPSNSPLIMALSGSKGSFINISQMIACVGQQAISGHRVPNGFEDRALPHFERHSKIPAA 829

Query: 702  KGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSV 761
            KGFV NSFYSGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K+LEDL + YD +V
Sbjct: 830  KGFVENSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCLHYDMTV 889

Query: 762  RNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIV 821
            RN+ G IVQ LYG DG+DP  MEGK   P+++ R+L  V A      +  L    + +  
Sbjct: 890  RNSVGDIVQILYGGDGLDPTYMEGKDC-PVDYKRVLDHVTAKSSCKNEEPLDGPDLIKAT 948

Query: 822  EKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGI 881
             + + +   E  SE F   L  F +G   K       +  + ++  S I   V  +   I
Sbjct: 949  NELVGSKDCECLSEEFKQELSTFLKGVARK-------IIHLRYNAPSNI--PVIFQLERI 999

Query: 882  TEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQG 941
            T  QL  FI TC  +Y   ++E GTA+GA+ AQSIGEPGTQMTLKTFHFAGVASMNITQG
Sbjct: 1000 TVSQLVEFIHTCKEKYMKAKIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQG 1059

Query: 942  VPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLA 1001
            VPRIKEIIN   +ISTPII+A LE + +   AR VKGRIEKT LG+V + I+ V      
Sbjct: 1060 VPRIKEIINANPKISTPIISAALENDVDPEYARRVKGRIEKTTLGEVTEYIEEVYLPDDC 1119

Query: 1002 SIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIH 1061
             +++ LD++ I+   L ++ + ++ SI  T K++L  + + V     + + P   K  I+
Sbjct: 1120 FLLVKLDIDRIKLLKLEVDVNSIRYSIC-TSKLRLNPKLVNVRGDSIITVNPSKSKYSIN 1178

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  +P +++KG+ +V R VI           ++  K +Y+L VEG  ++ VM  
Sbjct: 1179 YALTQLKETIPNIVIKGLPSVSRAVIHN--------DDSSGKTRYKLFVEGNNMREVMAT 1230

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G KT SN+  EV +TLGIEAAR  I+ EI   M+ HGMSID+RH ML+ADLMT RG
Sbjct: 1231 LGVLGRKTTSNNTIEVFKTLGIEAARATIMTEIKLVMENHGMSIDRRHPMLVADLMTSRG 1290

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITR G+ KM +SVL LASFEKT+DHLF+A+  G+ D I GVSE IIMGIP+P+GTG
Sbjct: 1291 EVLGITRQGLAKMKESVLNLASFEKTSDHLFDAAYYGQKDVICGVSESIIMGIPVPVGTG 1350

Query: 1242 ILKIRQR-DAVPPMLK 1256
            I K+  + D   P +K
Sbjct: 1351 IFKLLHKADKDEPRIK 1366


>gi|380025198|ref|XP_003696364.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC1-like, partial [Apis florea]
          Length = 1994

 Score = 1118 bits (2893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 603/1265 (47%), Positives = 822/1265 (64%), Gaps = 57/1265 (4%)

Query: 3    NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK----- 57
            NP +  L +  L K I+ K    A K   C  CG +NG VKKA  +L I+H++ K     
Sbjct: 759  NPNLGYLTRKALRKQILDK----AKKTSVCQNCGDLNGTVKKA-GLLKIVHEKYKAKKKV 813

Query: 58   ---VTESLQEFASAITHTKESKAAVNVA-TYILNPVNVLFLFKRMTDTDCEVLYLSER-- 111
               V + L E+ + +   K  +  +      +LNP+ V  + +++ + D  +L ++    
Sbjct: 814  DVIVQQKLAEYNNVLEENKALEGILQSGLVNVLNPLEVQSILEKIPENDIPLLMMNTECA 873

Query: 112  -PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             P+ LI+T I VPPI IRPSV+ D  + + E+ +T +L  I+  N  +Q+          
Sbjct: 874  LPKDLILTRIPVPPICIRPSVVSDIKAGTTEDHLTMKLSEIVFINDVIQKHRQSGAKVQM 933

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
                WE LQ+  A YINS++ G+P +MQ  +   G VQRLKGKQGRFRGNLSGKRV+++ 
Sbjct: 934  YSEDWEFLQLHCALYINSEMSGIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDFSS 993

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
            RTVISPDPNL+I +V +PI +A+ILTYPE+V+  NIE +R+ ++NGPD +PGA  I+   
Sbjct: 994  RTVISPDPNLRIEQVGVPIHVAKILTYPEKVNPSNIELMRKLVRNGPDIHPGANFIQQGK 1053

Query: 290  GTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
               +  + YG  R ++A +L+ G IV+RHL D DVVLFNRQPSLH++SIM H+A+I+  R
Sbjct: 1054 TQFKKYLRYGN-RQKIAQDLQYGDIVERHLRDDDVVLFNRQPSLHKLSIMAHKAKILDHR 1112

Query: 348  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQD 407
            T RFNE VC PYNADFDGDEMN+HVPQTEEAR EAL+LMG ++NL TP+NGE+L+A+TQD
Sbjct: 1113 TFRFNECVCTPYNADFDGDEMNLHVPQTEEARAEALVLMGNKSNLVTPRNGELLIAATQD 1172

Query: 408  FLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFSVL 464
            F+T  +L+T+KD F ++   S +   +  G D    ++LP PAILKP  LWTGKQ FS++
Sbjct: 1173 FITGGYLLTQKDMFLNKTQASQLAGCLLAGPDITMSINLPEPAILKPTTLWTGKQXFSLI 1232

Query: 465  IRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKA 524
            ++P+    +  NL  K + Y+              E +C ND +V  RNSEL++G + K+
Sbjct: 1233 LKPNNTCNIKANLKTKGRAYTTN------------EELCINDSYVIIRNSELLAGSMDKS 1280

Query: 525  TLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKK 584
            TLG+G+K  ++ +LLRD+G    +  M RLA++++ ++ N GFSIGI DV P + L   K
Sbjct: 1281 TLGSGSKQNIFYILLRDWGEDIATIAMWRLARMASFFLMNRGFSIGIGDVTPGQGLLKAK 1340

Query: 585  GKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW 644
             +L++  Y  C   I++  EG+L  +PGC   +TLEA+I   L+ IR+ AGKAC+  L  
Sbjct: 1341 QELLNAGYSKCTEYIQDMEEGRLICQPGCTEEETLEAMILKELSVIRDHAGKACLKELHP 1400

Query: 645  RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 704
             NSPLIM+  GSKGS INISQM+ACVGQQ++ G R PNGF DR+LPHF R +K PAAKGF
Sbjct: 1401 SNSPLIMALSGSKGSFINISQMIACVGQQAISGHRVPNGFEDRALPHFERHSKIPAAKGF 1460

Query: 705  VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
            V NSFYSGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K+LEDL + YD +VRN+
Sbjct: 1461 VENSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCLHYDMTVRNS 1520

Query: 765  GGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQ 824
             G IVQ LYG D +DP  MEGK   P+++ R+L  V+A  P   +  L    V +   + 
Sbjct: 1521 VGDIVQILYGGDALDPTYMEGKDC-PVDYKRILDHVRAKSPCKNEESLDGHSVIKATNEL 1579

Query: 825  LAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILE-EVTHKTSGITE 883
            L +   E  SE F   L  F +    K+ +             + IL   V  +   +T 
Sbjct: 1580 LNSEEYECLSEEFKQELSTFLKTVARKIARL----------RHNAILNVPVILQLERLTV 1629

Query: 884  KQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVP 943
             QL  FI TC  +Y   ++E GTA+GA+ AQSIGEPGTQMTLKTFHFAGVASMNITQGVP
Sbjct: 1630 SQLVEFIHTCKEKYMRAKIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVP 1689

Query: 944  RIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASI 1003
            RIKEIIN + +ISTPIITA L  + +   AR VKGRIEKT+LG+V + I+ V       +
Sbjct: 1690 RIKEIINASPKISTPIITAALINDADPEYARRVKGRIEKTILGEVTEYIEEVYLPDDCFL 1749

Query: 1004 VIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFE 1063
            +I +D++ I+   L ++ + ++ SI  T K++L  + + V     + + P  +K  +++ 
Sbjct: 1750 LIKIDIDRIKLLKLEVDVNSIRYSIC-TSKLRLNPKLVNVRGDSIITVNPSKNKYSLNYA 1808

Query: 1064 LYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEG 1123
            L  LK ++P +++KG+ +V R VI           ++  KKKY+L VEG  ++ VM   G
Sbjct: 1809 LTQLKELIPNIVIKGLPSVSRAVIHN--------DDSCGKKKYKLFVEGDNMRDVMATLG 1860

Query: 1124 IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
            + G KT SN+  EV +TLGIEAAR  I+ EI   M+ HGMSID+RH ML+ADLMT RGEV
Sbjct: 1861 VLGKKTTSNNTIEVFKTLGIEAARATIMTEIKLVMENHGMSIDRRHPMLVADLMTSRGEV 1920

Query: 1184 LGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGIL 1243
            LGITR G+ KM +SVL LASFEKT+DHLF+A+  G+ D I GVSE IIMGIP+P+GTGI 
Sbjct: 1921 LGITRQGLAKMKESVLNLASFEKTSDHLFDAAYYGQKDVICGVSESIIMGIPVPVGTGIF 1980

Query: 1244 KIRQR 1248
            K+  +
Sbjct: 1981 KLLHK 1985


>gi|358393275|gb|EHK42676.1| hypothetical protein TRIATDRAFT_86460 [Trichoderma atroviride IMI
            206040]
          Length = 1463

 Score = 1117 bits (2890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/1324 (44%), Positives = 832/1324 (62%), Gaps = 106/1324 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKV-- 58
            +R P ++ +R+T + K I ++C     K   CP CG ING ++K V VL + HD+     
Sbjct: 136  LRRPGLDNIRRTAVYKRINEQCR----KCRTCPYCGEINGQIRK-VGVLKLTHDKFSAYK 190

Query: 59   ---------TESLQEFASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCEV 105
                      ES   F ++    K+    ++     A   LNP+ VL  FK +  TDCE+
Sbjct: 191  KSTSQKKMPPESKIAFDASFDEAKKLNPDLDKHLVRAMEDLNPLWVLNHFKMIGPTDCEL 250

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L     RPE  I   +  PP+ IRPSV  +G+ S E+D+T +L  I+  +  ++  L 
Sbjct: 251  LGLDPTEGRPEMFIWQFVPAPPVCIRPSVAQEGA-STEDDLTAKLAEIVYISGLIRTALN 309

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            +       +  WE +Q+++A Y+NSDV G+       + + GF QRLKGKQGRFRGNLSG
Sbjct: 310  KGKPMQTIMEQWEYMQLQIAMYVNSDVPGLN-QPGFGKSIRGFCQRLKGKQGRFRGNLSG 368

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I +VA+P  +A+ LT+PERV  HN+EKLRQCI NGP  +PGA
Sbjct: 369  KRVDFSGRTVISPDPNLAINQVAVPQLVAKNLTFPERVQSHNLEKLRQCILNGPKVHPGA 428

Query: 283  RMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
              +   +G  +  + +G  +  +A +L+ G +V+RHLEDGD+VLFNRQPSLH++SIM H 
Sbjct: 429  NHVIKDNGNWKQDLQFGD-KALVARDLRIGDVVERHLEDGDIVLFNRQPSLHKLSIMSHF 487

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
            A+I PWRT R NE VC PYNADFDGDEMN+HVPQ+EEAR EA+ LMGV++NL TPKNGE 
Sbjct: 488  AKIRPWRTFRLNECVCGPYNADFDGDEMNLHVPQSEEARAEAMTLMGVKHNLATPKNGEP 547

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A+TQDF+T+S+L++ KD FY+R AF+ +C +M DG+  +DLP P+I+KP  LWTGKQ+
Sbjct: 548  IIAATQDFITASYLLSSKDRFYNRKAFTYICTHMMDGVVNIDLPPPSIIKPEALWTGKQI 607

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            F+VL+RP+    V VNL  + + YS +          +   M PND ++  RNSE++ G+
Sbjct: 608  FNVLMRPNKESPVLVNLDARCREYSAR--------PGQCPDMDPNDAWLVIRNSEVMCGR 659

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + K+ +G+G K+ ++ ++LRD+G       MNRL KL AR +GN GFS+G+ DV P  EL
Sbjct: 660  MDKSIIGSGKKNSVFYIILRDFGPDHAVAAMNRLTKLCARALGNQGFSLGVGDVFPITEL 719

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
            +  + +L+ + Y+  +  I+ +  GKL+  PGCD  QTLE  I+ IL+++R+ AG+ C+ 
Sbjct: 720  TRSRDRLVQDAYDKSDALIETFKAGKLEKAPGCDMEQTLEISISGILSKVRQQAGQQCVD 779

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
            +L   N+PLIM+  GSKG  IN++QMVACVGQQ +GG+R P+GF DRSLPHF + A++PA
Sbjct: 780  TLSRNNAPLIMANSGSKGLHINVAQMVACVGQQIIGGQRVPDGFQDRSLPHFHKNARQPA 839

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSFYSGL  TEFFFH + GREGL+DTAVKTA+TGYMSRRL+K+LEDLS QYDN+
Sbjct: 840  SKGFVRNSFYSGLFPTEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLSTQYDNT 899

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQV--- 817
            VR + G IVQF +G D +DP +MEG S  P+ FDR     ++T     +R L P++V   
Sbjct: 900  VRTSAGGIVQFQFGADKLDPVDMEG-SAVPVAFDRTWTHSESTTWDNNERSLLPREVLAV 958

Query: 818  -SEIVEKQLAAYGKE---------------------SCSEAFLNSLRKFFEGQQDKLDKK 855
             S ++EK+   Y +                        +  F+ ++  +   +  K+ K 
Sbjct: 959  CSSMLEKEKQRYQRHRLVDNALLNYSDPTDENIDEHESARGFIETIYSYVSDRAQKISKA 1018

Query: 856  IKFV--------EDIGWDDKSQILEEVT--HKTSGITEKQLEVFIQTCFSRYRVKRVEAG 905
               V        ED+  D  + +  ++    + + ++   L+ F++ C  RY    VE G
Sbjct: 1019 RALVGLDPDPTQEDVIADASADLKVQLARVERVTKVSLTTLQRFVKECLERYHKAHVEPG 1078

Query: 906  TAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELE 965
             A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT  L 
Sbjct: 1079 HAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKNISTPVITCPLL 1138

Query: 966  CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVK 1025
             +    AAR+VKGRIEKT +  V K+I+    +   ++++ +DME +Q  HL I    + 
Sbjct: 1139 NDKQIEAARIVKGRIEKTFVIDVLKAIEDEWVTDRGTVILYIDMEALQSMHLGIGVVDIA 1198

Query: 1026 ESIVQTPKIKLKQQHIKV-LDFRKLEIF-----PPVDK---------------SKIHFEL 1064
            E+I++  K+K++   I +  ++ K+ +      P   K               S     +
Sbjct: 1199 EAILRFKKLKIQPSDISIGPNYIKIFVLNSWVDPDAAKKRQRSGASLTMTEETSDFLLRV 1258

Query: 1065 YSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGI 1124
              L+  LP + + G     R +I           +  E+ ++ +LVEG GL+A M  EG+
Sbjct: 1259 NHLRRTLPKIPISGYNEATRAII-----------QTSEQSEHMVLVEGYGLRACMTTEGV 1307

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
             G K  SN + E +  LGIEAAR  I+ EI+  M   GM ID RH+ LLAD+MTF+GEVL
Sbjct: 1308 IGTKASSNSVMEARDVLGIEAARTTIVVEISAVMA--GMDIDPRHIQLLADVMTFKGEVL 1365

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
            GITRFG+ KM +SVL LASFEKT DHLF+A+   + DRIEGVSECIIMG  M +GTG  +
Sbjct: 1366 GITRFGLSKMRESVLQLASFEKTPDHLFDAAAKMKTDRIEGVSECIIMGQTMSVGTGSFQ 1425

Query: 1245 IRQR 1248
            + +R
Sbjct: 1426 VVRR 1429


>gi|426365245|ref|XP_004049691.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Gorilla
            gorilla gorilla]
          Length = 1334

 Score = 1117 bits (2889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/1275 (48%), Positives = 821/1275 (64%), Gaps = 99/1275 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 120  LKRPGLTYLQKRGLKKKISDKCR----KKNICHHCGAFNGTVKKC-GLLKIIHEKYKTNK 174

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 175  KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 234

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 235  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 294

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 295  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 354

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ +QNGP+ +PGA  I  
Sbjct: 355  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQ 414

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H  +   
Sbjct: 415  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLTKA-- 471

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
                                                         NL TP+NGE L+A+ 
Sbjct: 472  ---------------------------------------------NLVTPRNGEPLIAAI 486

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 487  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 546

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 547  VILRPSNDNPVRANLRTKGKQYCGKG-----------EDLCANDSYVTIQNSELMSGSMD 595

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 596  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 655

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 656  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 715

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 716  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 775

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 776  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 835

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  ++    E
Sbjct: 836  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCPSEPALSKNELILTTE 894

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +G  +K+ K     +  G +D       V ++   IT
Sbjct: 895  SIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 951

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 952  PTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1011

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1012 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1071

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  + KS ++
Sbjct: 1072 ILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1130

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L  LK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1131 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1182

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++G
Sbjct: 1183 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1242

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG
Sbjct: 1243 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1302

Query: 1242 ILKIRQ---RDAVPP 1253
            + K+     RD  PP
Sbjct: 1303 LFKLLHKADRDPNPP 1317


>gi|408390218|gb|EKJ69624.1| hypothetical protein FPSE_10220 [Fusarium pseudograminearum CS3096]
          Length = 1450

 Score = 1113 bits (2880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1313 (45%), Positives = 825/1313 (62%), Gaps = 97/1313 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----S 56
            +R P ++ LR+T + K I ++C     K   CP CG +NG ++K + VL + HD+    +
Sbjct: 137  LRRPFLDNLRRTQICKRINEQCR----KVKTCPYCGSLNGQIRK-IGVLKLAHDKFVAYN 191

Query: 57   KVT-------ESLQEFASAITHTK----ESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
            K T       ES  +F ++    K    E    +  A   LNP+ VL LFK ++ TDCE+
Sbjct: 192  KSTSIKKTPPESKIKFDNSFNEAKRENPELDKHLRKAMEDLNPLRVLNLFKMISPTDCEL 251

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L     RPE  I   +  PP+ IRPSV  D + SNE+DIT +L  I+  +  ++  L 
Sbjct: 252  LGLDPAEGRPEMFIWQFLPAPPVCIRPSVAQDNA-SNEDDITTKLADIVWVSGMIRSALQ 310

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            + +     +  WE LQ ++A Y+NSDV G+       +   GF QRLKGKQGRFRGNLSG
Sbjct: 311  KGSPVQTIMEQWEYLQTQIAMYVNSDVPGLQ-QPGFGKTTRGFCQRLKGKQGRFRGNLSG 369

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I +VA+P  +A+ LTYPERV  HNIEKLRQC++NGPD +PGA
Sbjct: 370  KRVDFSGRTVISPDPNLGIDQVAVPELVAKNLTYPERVQRHNIEKLRQCVKNGPDVWPGA 429

Query: 283  RMIRYPDGTARVLYGKFRNQ--LAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
            + +   D    +   KF N+  +A +LK G IV+RHLED D+VLFNRQPSLH++SIM H 
Sbjct: 430  QRVIKSDEGGYLQSLKFGNKEYIARDLKFGDIVERHLEDNDIVLFNRQPSLHKLSIMSHL 489

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
            A++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMG+++NL TPKNGE 
Sbjct: 490  AKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEAINLMGIKHNLATPKNGEP 549

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A+TQDF+T+++L++ KD F+DR  F+ +C +M DG   +DLP PAI+ P  LWTGKQL
Sbjct: 550  VIAATQDFITAAYLLSGKDRFFDRKTFTYLCMHMMDGKTHLDLPPPAIIAPQSLWTGKQL 609

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            F +L+RP+ +  V VNL  K KTY  +          +   M PNDG++  RNSE++ G+
Sbjct: 610  FGMLMRPNKDSPVKVNLDAKCKTYKAR--------PGQCPDMDPNDGWLVVRNSEVMCGR 661

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + K+T+G+G KD ++ V+LRD+G       MNRLAKL AR + NHGFSIGI DV P + L
Sbjct: 662  MDKSTVGDGKKDSIFYVILRDFGPDEAVTAMNRLAKLCARQLTNHGFSIGIGDVFPPESL 721

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
              +K +L +  Y+ C+  I+ +  GKL+   GC+  Q+LE  ++ IL+++R+ AG  C+ 
Sbjct: 722  IQEKERLAAAAYKQCDDLIETFKAGKLEKAAGCNQEQSLENFMSGILSKVRQQAGSYCVE 781

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
            +L   N+PL+M++ GSKGS +N++QMVA VGQQ +GG R  +GF DR+LPHF + A++P 
Sbjct: 782  TLSRNNAPLVMAKSGSKGSDLNVAQMVALVGQQIIGGARVADGFQDRTLPHFHKNARQPP 841

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSFYSGLS TEF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD++
Sbjct: 842  SKGFVKNSFYSGLSPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDT 901

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEI 820
            VR +GG IVQF +G D +DP +MEG S  P++F+R     ++      +  ++P ++   
Sbjct: 902  VRTSGGGIVQFQFGADKLDPVDMEG-SAAPVHFERTWTHAQSLTVDNTETSMTPDEIRSF 960

Query: 821  VEKQL-----------------------AAYG--KESCSEAFLNSLRKFFEGQQDKLDKK 855
             + +L                       + YG  +   +  FL ++ +  E    KL++ 
Sbjct: 961  CDSKLEHERRRYVRKGLLGGEVLDYEDTSDYGIDEHEGARGFLKAIERHVEALASKLERV 1020

Query: 856  IKFVEDIGWDDKSQI---LEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIG 912
             K     G++    I    ++   +T+ +T   L++FI+ C  +Y+   VE G A+GA+G
Sbjct: 1021 RKLA---GFEGDRMIRPTAQDHADRTAKVTLSTLQLFIKLCLEKYKKAHVEPGHAVGAVG 1077

Query: 913  AQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENA 972
            A SIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT  LE N+   A
Sbjct: 1078 AHSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKAISTPVITCPLENNEQIEA 1137

Query: 973  ARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTP 1032
            ARVVKGRIEKT +  + + ++    +   ++V+ +D   + D HL I    + E+I +  
Sbjct: 1138 ARVVKGRIEKTYISDILRFVEDEWRTTEGNVVLQIDPTALSDMHLGIGPYDIAEAICKQR 1197

Query: 1033 KIKLKQQHIKV----LDFRKLEIFPPVDK-------------SKIHFELYSLKNVLPMVI 1075
            K+K+++  + +    +  R  +I  P  K               +      L+  LP V 
Sbjct: 1198 KLKVQRDDLSIDGDRIIVRVRDISDPAAKRTAARSKAAAAESGDMLLRANFLRRALPNVP 1257

Query: 1076 VKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + G     R +I           +  E+  + +LVEG GL+  M  EG+ G K  SN++ 
Sbjct: 1258 ISGYSEATRAII-----------QTSEQNTHTVLVEGYGLRECMTTEGVIGTKASSNNVM 1306

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E +  LGIEAAR  I  EI   M    M+ID RHM LLAD+MT++GEVLGITRFG+ KM 
Sbjct: 1307 ECRDVLGIEAARTTIAVEIGSVMG--DMNIDPRHMQLLADVMTYKGEVLGITRFGLSKMR 1364

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
             SVL LASFEKT DHLF A+   + D+IEGVSECIIMG  M +GTG  ++ +R
Sbjct: 1365 DSVLQLASFEKTPDHLFEAAAGMKTDQIEGVSECIIMGQTMSVGTGAFQVVRR 1417


>gi|440296621|gb|ELP89407.1| DNA-directed RNA polymerase III subunit RPC1, putative [Entamoeba
            invadens IP1]
          Length = 1381

 Score = 1111 bits (2874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/1276 (46%), Positives = 819/1276 (64%), Gaps = 57/1276 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            MRN   + +++T L+++++ +C    +    CP C  ING V+K    + ++HD+     
Sbjct: 151  MRNKTTDTIQRTMLVRALIVQCRKHYNG---CPHCNAINGSVRK-YGNIKLVHDKYHKDP 206

Query: 61   SLQE-------FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSER-- 111
            +L E       F  +I   KE  A +  A   L+P+ VL +FK +   D E +  S    
Sbjct: 207  NLNEMNEFYDGFDESIKMDKEIGAFLGNAQEDLDPLRVLNIFKSLVREDIEAMDFSPDAP 266

Query: 112  PEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
            PEKLI+T++ VPP+ IRPSV MDG + SNE+D+T +LK +++ N  +   + +  S ++ 
Sbjct: 267  PEKLILTSVPVPPLTIRPSVSMDGGNASNEDDLTTQLKEVVECNTKIIALMEKGYSPYQF 326

Query: 171  LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
               W+ L V V+  INSD+   P   +  +PL    QRLKGK GRFRGNL GKRV+++GR
Sbjct: 327  YEAWDQLTVAVSLIINSDL---PMCEEKGKPLRSLCQRLKGKHGRFRGNLLGKRVDFSGR 383

Query: 231  TVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDG 290
            TVISPDPNL + ++ +P  MA  LTYPERV+ +NIEK+RQ ++NGPD YPG   I   DG
Sbjct: 384  TVISPDPNLDVEQLGVPQLMAITLTYPERVTRYNIEKMRQLVRNGPDTYPGCNGIIMIDG 443

Query: 291  TARVLYGK--FRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 348
              R +  K   R + A EL+ G IV+RHLEDGD+VLFNRQPSLHR+SIMCH A+++PWRT
Sbjct: 444  NRRSMMIKPEMREKFAKELRIGEIVERHLEDGDIVLFNRQPSLHRISIMCHIAKVLPWRT 503

Query: 349  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDF 408
            +RFNE VC PYNADFDGDEMN+HVPQTEEAR E L+LM    NL TP+ G++++A TQDF
Sbjct: 504  MRFNECVCTPYNADFDGDEMNLHVPQTEEARAECLMLMHSAKNLQTPRTGQMIIAETQDF 563

Query: 409  LTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
            LT SFL+T KD         L  C+  +    + LPTPA LKP +LWTGKQL+ + +RP+
Sbjct: 564  LTVSFLLTAKDFVVTEEEMMLWSCWFHNAGVEIRLPTPAYLKPKKLWTGKQLYGLALRPN 623

Query: 469  ANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGN 528
             N  V + L    K YS      EG      + MC  DG++ F++S+L+ GQ+ KA +G+
Sbjct: 624  PNFGVDICLDAPSKNYSK-----EG------KWMCMKDGWICFKHSQLVCGQIDKAIIGS 672

Query: 529  GNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLI 588
            GNK GL+ ++LRDYG   ++  M  +++  AR++G++GFSIGI DV P   L+  K +L+
Sbjct: 673  GNKSGLFHLILRDYGLLDSAKMMAHISRFCARFLGDYGFSIGISDVTPSLSLTRMKEELV 732

Query: 589  SENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSP 648
             E Y  C+  IK YN+GK +++PG    QTLEA++   L+++RE AGK C+  L   NSP
Sbjct: 733  GEGYAKCDQFIKSYNDGKQEIQPGSTPEQTLEALLNSELSQVRERAGKRCIDELRCDNSP 792

Query: 649  LIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANS 708
            L+M+ CGSKGS INISQM+ACVGQQ+V G R  +GFI RSLPHFP  ++ P AKGFV NS
Sbjct: 793  LVMALCGSKGSVINISQMIACVGQQTVNGGRVSDGFISRSLPHFPLHSRTPQAKGFVKNS 852

Query: 709  FYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCI 768
            F++GL+ATEFFFHTMGGREGLVD+AVKTA+TGYM RRL+KALEDL + YD +VR+AG  +
Sbjct: 853  FFTGLNATEFFFHTMGGREGLVDSAVKTAETGYMQRRLMKALEDLHVHYDGTVRSAGMTV 912

Query: 769  VQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAY 828
            ++F YGDDG+DP  +E    +P+N++ +L  ++         Y++P+      ++ L   
Sbjct: 913  IEFKYGDDGLDPLKVECDI-DPINYESVLANLQQH-QKTEDLYITPKTFDSYYKEALT-- 968

Query: 829  GKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEV 888
            G +  ++ + + L  F E ++ ++ +         + +KS     V     GIT   ++ 
Sbjct: 969  GVQIVTDLWKSQLDVFMEKKKSEMSEVYTH-----YSEKS-----VRDGLCGITVDTMKK 1018

Query: 889  FIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEI 948
            F++ C  +      E GT +GA+  QS+GEP TQM LKTFHFAGVASMNI  GVPRIKEI
Sbjct: 1019 FVKVCEQKGLRNICEPGTPVGALAGQSMGEPSTQMVLKTFHFAGVASMNIALGVPRIKEI 1078

Query: 949  INGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALD 1008
            IN +K+I TPI+TA+L  + +  +AR+VKGRIE T L ++AKS+KIV     A + I LD
Sbjct: 1079 INASKKIQTPIVTAKLVNSKDVTSARIVKGRIEATKLKEIAKSVKIVFKPAEAYVSIKLD 1138

Query: 1009 METIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK 1068
             ETI+   L  +A+ V + ++ T  +KLK++ + V +  KL ++     + + F L +L+
Sbjct: 1139 FETIKQLQLECSAEKVHDILLNTRGLKLKEKQVLVRNVDKLRVYVDKVNTSLLFSLNALR 1198

Query: 1069 NVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCK 1128
            N L  +IV GI+   R VI            N  K  + LLVEG+ L  VMG  G+ G  
Sbjct: 1199 NQLLEIIVCGIEGTGRAVI------------NKSKIGFELLVEGSELLKVMGVAGVIGES 1246

Query: 1129 TKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITR 1188
            T  NHI  V++ LGIEAAR  II EI   M A+G+SID RH++LL+DLMTF+G +LGITR
Sbjct: 1247 TTCNHIMVVEKVLGIEAARSTIISEIKNVMDAYGLSIDIRHLLLLSDLMTFKGVILGITR 1306

Query: 1189 FGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            +GI KM  SV   ASFE+T DHLF+A+V+ R + I GVSE II+G  + LGTG++ I   
Sbjct: 1307 YGISKMKDSVFTFASFERTNDHLFDAAVHSRQNDIAGVSESIIVGNQVGLGTGLMSI-MY 1365

Query: 1249 DAVPPMLKYGAPDPIM 1264
            D   P++ Y   DP+ 
Sbjct: 1366 DPPKPIVFYKKYDPLF 1381


>gi|400602522|gb|EJP70124.1| DNA-directed RNA polymerase III subunit RPC1 [Beauveria bassiana
            ARSEF 2860]
          Length = 1443

 Score = 1110 bits (2871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/1308 (45%), Positives = 813/1308 (62%), Gaps = 89/1308 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----S 56
            +R P ++ LR+T + K I ++C     K   CP CG +NG ++K   VL ++HD+    +
Sbjct: 135  LRRPLIDNLRRTQICKKINEQCR----KTKNCPYCGSVNGQIRK-FGVLKLVHDKFISYN 189

Query: 57   KVT-------ESLQEFASAITHTK----ESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
            K T       ES   F ++ T  K    E +  +  A   LNP+ VL LFK +T TDCE+
Sbjct: 190  KSTAIKKVPPESKILFDASFTEAKRENPELEKHLRKAMEDLNPLRVLNLFKLITATDCEL 249

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L+    RPE  I   +  PP+ IRPSV  D + SNE+DIT +L  I+  +  ++  L 
Sbjct: 250  LGLNATEGRPEMFIWQFLPAPPVCIRPSVAQDNA-SNEDDITTKLADIVWVSGMIRSALQ 308

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            + ++    +  WE LQ ++A Y+NSDV G+       + + GF QRLKGKQGRFRGNLSG
Sbjct: 309  KGSAIQTIMEQWEYLQTQIAMYVNSDVPGLQ-QPGFGKAMRGFCQRLKGKQGRFRGNLSG 367

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I EVAIP  +A+ LTYPERV   N+ KLRQC++NGPD +PGA
Sbjct: 368  KRVDFSGRTVISPDPNLGIDEVAIPQLVAKNLTYPERVQRQNMAKLRQCVKNGPDVWPGA 427

Query: 283  RMIRYPDGTARVLYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
            + +   D     +  KF  RN +A +L+ G +V+RH+EDGD+VLFNRQPSLH++SIM H 
Sbjct: 428  QSVIKMDEGGYKINLKFGNRNMVARDLRIGDVVERHIEDGDIVLFNRQPSLHKLSIMSHL 487

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
             ++ PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEA+ LMGV++NL TPK+G  
Sbjct: 488  VKVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAITLMGVRHNLTTPKDGAP 547

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++ +TQDF+T++FL++ KD F+DR  F+ MC +M +   R DLP P I+ PV LWTGKQL
Sbjct: 548  IIGATQDFITAAFLLSSKDRFFDRKTFTYMCMHMLETNTRFDLPPPTIIAPVALWTGKQL 607

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            F+V++RP+   ++ +N   K KT+S K           I  M PNDG++  RNSE++ G 
Sbjct: 608  FNVMMRPNKESKIRINFESKCKTFSGK--------SKNIPDMDPNDGWLVVRNSEVMCGV 659

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + KAT+G G KD ++ V+LRD+GA   +  MNRLA+L AR + N GFSIG+ DV P   L
Sbjct: 660  MDKATVGTGKKDSVFYVMLRDFGADHAATAMNRLARLCARTLTNRGFSIGVGDVFPTGSL 719

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
            + +  +L+S  Y  C+  I+ +  GKL+  PGC+  QTLE  I+ IL+++R+ AG  C+ 
Sbjct: 720  TAEVERLVSIAYAQCDDLIESFKAGKLEKSPGCNLEQTLENSISGILSKVRQQAGDYCVD 779

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
            +L   N+PLIM++ GSKGS IN++QMVA VGQQ +GG+R P+GF DRSLPHF + A++P 
Sbjct: 780  TLSRNNAPLIMAKSGSKGSDINVAQMVALVGQQIIGGQRVPDGFQDRSLPHFFKNARQPP 839

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSFY+GL  TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD++
Sbjct: 840  SKGFVKNSFYTGLYPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDT 899

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEI 820
            VR +GG +VQF +G D +DP +MEG SG P+ F R     + T     +  L+P +  E+
Sbjct: 900  VRTSGGTVVQFQFGGDRLDPVDMEG-SGAPVQFVRTWRHAENTTWDNNEAALTPNEAREL 958

Query: 821  VEKQLAAYGKESCSEAFLN------------------SLRKFFEGQQDKLDKKIKFVEDI 862
                L    K    +  L+                    RKF    +D +   I  +E +
Sbjct: 959  CANMLINERKRFPRKGLLHGEELDYEDDSDYAVDEHEGARKFITEVEDFVGVLINKLERV 1018

Query: 863  -------GWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQS 915
                   G +      ++   +T+ IT   L +F++ C  +Y+  +VE G A+GA+GAQS
Sbjct: 1019 RALAGLSGNEKTRAAAQDHADRTAKITATTLRLFVKLCLHKYKKAQVEPGHAVGAVGAQS 1078

Query: 916  IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARV 975
            IGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT  L  N    AA+V
Sbjct: 1079 IGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKLISTPVITCPLMNNQQIEAAKV 1138

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIK 1035
            VK RIEK  L  V   I+        ++V+ +D + + D HL I    + ++I +  K+K
Sbjct: 1139 VKARIEKIFLEDVLHYIEDEWRPDEGNVVVQVDRQALADMHLGIGIHDIAQAICKDRKMK 1198

Query: 1036 LKQQHI---------------KVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIK 1080
            ++   +                VL  R        D S +     +L+ +LP + + G  
Sbjct: 1199 IQATDVAIIGDRISIRVRDNASVLAKRTTRGKAAEDTSDMLLRANALRRMLPALPISGYP 1258

Query: 1081 TVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQT 1140
               R +I           E  E   +R+LVEG G QA +  EG+ G + ++N + E    
Sbjct: 1259 DASRALI-----------ETCEDGTHRVLVEGYGFQACLTTEGVIGTQVRTNSVTECNDV 1307

Query: 1141 LGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLM 1200
            LGIEAAR  I  EI + MK   M ID RHM LLAD MTF+GE+LGITRFG+ KM  SVL 
Sbjct: 1308 LGIEAARTTIAFEIEQVMKF--MEIDHRHMQLLADAMTFKGEILGITRFGLSKMRDSVLH 1365

Query: 1201 LASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            LASFEKT DHLF A+   + D IEGVSE IIMG  M +GTG  ++ +R
Sbjct: 1366 LASFEKTPDHLFEAAAGMKTDEIEGVSEGIIMGQGMAVGTGAFQVVRR 1413


>gi|67476290|ref|XP_653748.1| DNA-directed RNA polymerase III largest subunit [Entamoeba
            histolytica HM-1:IMSS]
 gi|56470729|gb|EAL48362.1| DNA-directed RNA polymerase III largest subunit, putative [Entamoeba
            histolytica HM-1:IMSS]
 gi|449705808|gb|EMD45780.1| DNA-directed RNA polymerase III largest subunit, putative [Entamoeba
            histolytica KU27]
          Length = 1379

 Score = 1110 bits (2871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/1280 (46%), Positives = 826/1280 (64%), Gaps = 63/1280 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----- 55
            MRN K + + +T L+++++ +C    +    CP C  ING +KK    L ++HD+     
Sbjct: 147  MRNKKTDTVARTYLVRALIAQCRKHYNS---CPHCNAINGSIKK-YGNLRLVHDKYHRDP 202

Query: 56   --SKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SE 110
              +++ E    F  +I   K+  A +N A   L+P  VL +F+ +   D E +     + 
Sbjct: 203  TITEMNEFYDGFEESIKLDKDINAFINNAQEDLDPRKVLSIFRSLIREDIETMDFDPDNA 262

Query: 111  RPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             PE +I+T++ VPPIAIRPSV MDG + SNE+D+T +LK I++ N  +++ +    S ++
Sbjct: 263  PPENMILTSVPVPPIAIRPSVAMDGGNASNEDDLTTQLKEIMECNDRIKEMIKRGASPYQ 322

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
                W+ L V V+ +INS++ G        +PL    QRLKGK GRFRGNL GKRV+++G
Sbjct: 323  YYDSWDQLTVAVSMFINSELPGCD---DKGKPLRAICQRLKGKHGRFRGNLLGKRVDFSG 379

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYP 288
            RTVISPDPNL I ++ +P  MA  LTYPERV+ HNI+KLRQ + NG + YPG   +I   
Sbjct: 380  RTVISPDPNLDIEQIGVPKLMAVKLTYPERVTKHNIDKLRQLVINGSNNYPGCNSIIGGS 439

Query: 289  DGTARVLYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW 346
            DG  R +  K   R + A +LK G IV+RHLED D+VLFNRQPSLHR+SIMCHRA+I+PW
Sbjct: 440  DGLRRSMCIKLEMREKFAKDLKIGDIVERHLEDNDIVLFNRQPSLHRISIMCHRAKILPW 499

Query: 347  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQ 406
            RTLRFNE VC PYNADFDGDEMN+HVPQTEEAR E L+LM    NL TP+ G++++A TQ
Sbjct: 500  RTLRFNECVCTPYNADFDGDEMNLHVPQTEEARAECLMLMHSAKNLQTPRTGQMIIAETQ 559

Query: 407  DFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIR 466
            DFLT+S+L+T KD   +        C+  +    +DLPTPA LKP +LWTGKQL+ + ++
Sbjct: 560  DFLTTSYLLTSKDFVIEEEDMMQWACWFHNAGTEIDLPTPAYLKPKKLWTGKQLYGLALK 619

Query: 467  PHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATL 526
            P+ +  V ++L V  K YS      EG      + MC  DG++ F+NS+L+SGQ+ K+ +
Sbjct: 620  PNKHEGVNISLDVPSKLYSK-----EG------KWMCVKDGWICFKNSQLLSGQIEKSII 668

Query: 527  GNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGK 586
            G+GNK GL+ ++LRDYG   ++  M  +++  AR++G++GFSIGI DV P  +L+  K +
Sbjct: 669  GSGNKTGLFHLILRDYGTLESAKIMAHISRFCARFLGDYGFSIGISDVTPSADLTQMKEE 728

Query: 587  LISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRN 646
            L+SE Y+ C+  I++Y  GK +++ G    QTLEA++ + L++IRE AGK C+  L   N
Sbjct: 729  LVSEGYKKCDQFIEDYKSGKQEVQAGSTPEQTLEALLNNELSQIRERAGKRCIEELKSDN 788

Query: 647  SPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVA 706
            SPL+M+  GSKGS INISQM+ACVGQQ+V G R  +GFI RSLPHF   ++ P AKGFV 
Sbjct: 789  SPLVMALSGSKGSVINISQMIACVGQQTVNGGRVSDGFISRSLPHFALHSRTPQAKGFVK 848

Query: 707  NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGG 766
            NSF++GL+ATEFFFHTMGGREGLVD+AVKTA+TGYM RRL+KALEDL + YD +VR+A  
Sbjct: 849  NSFFTGLNATEFFFHTMGGREGLVDSAVKTAETGYMQRRLMKALEDLHVHYDGTVRSASL 908

Query: 767  CIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLA 826
             +++F YGDDG+DP  +E     P+N + +L  ++    P  + Y++P    E  +K+  
Sbjct: 909  TVIEFKYGDDGLDPLKVESDK-YPINLESVLSNLQQNQKPDDE-YITP----ESFDKEYN 962

Query: 827  AYGKES--CSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEK 884
            A   ++   SE +   +  F + +++++ +         ++  +Q  E   H   GIT +
Sbjct: 963  AIISQTKIVSELWKQQIETFLKEKKEEMTEI--------YNHYNQ--ENAQHGLCGITIQ 1012

Query: 885  QLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 944
             L+ FI  C  +      EAGT +GA+  QS+GEP TQM LKTFHFAGVASMNI  GVPR
Sbjct: 1013 TLKDFISICHEKGLRSVCEAGTPVGALAGQSMGEPSTQMVLKTFHFAGVASMNIALGVPR 1072

Query: 945  IKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIV 1004
            IKEIIN +K+I TPI+TA+L  + +  +AR+VKGRIE T L ++AKS+KIV     A I 
Sbjct: 1073 IKEIINASKKIQTPIVTAKLVNSQDVTSARIVKGRIEATRLKEIAKSVKIVFKPAEAYIS 1132

Query: 1005 IALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFEL 1064
            + LD ETI+   L    + V++ ++    +KLK   + + + +KL ++     + + F L
Sbjct: 1133 VKLDFETIKQLELECTIEKVQDVLLNYRGLKLKDNQVIIRNKQKLRVYVDKSSTSLLFAL 1192

Query: 1065 YSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGI 1124
             SL+N L  VIV GI+   R VI            N  K  + LLVEG+ L  VMG  G+
Sbjct: 1193 NSLRNQLLEVIVCGIENTGRAVI------------NKNKGSFELLVEGSELLKVMGTPGV 1240

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
             G +T SNHI  V++ LGIEAAR  II EI   M A+G+SID RH++LL+DLMTF+G +L
Sbjct: 1241 IGEETTSNHIAVVEKVLGIEAARSTIISEIKNVMDAYGLSIDVRHLLLLSDLMTFKGVIL 1300

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
            GITR+GI KM  SV   ASFE+T DHLF+A+V+ R D I+GVSE II+G  + LGTG+++
Sbjct: 1301 GITRYGISKMKDSVFTFASFERTNDHLFDAAVHSRKDEIKGVSESIIVGNQVGLGTGLMQ 1360

Query: 1245 IRQRDAVPPMLKYGAPDPIM 1264
            I   D   P+      DP+ 
Sbjct: 1361 ILY-DPPKPIFLQRKYDPLF 1379


>gi|67524109|ref|XP_660116.1| hypothetical protein AN2512.2 [Aspergillus nidulans FGSC A4]
 gi|40744841|gb|EAA63997.1| hypothetical protein AN2512.2 [Aspergillus nidulans FGSC A4]
          Length = 2092

 Score = 1109 bits (2869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1302 (46%), Positives = 836/1302 (64%), Gaps = 87/1302 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKK-AVAVLGIIHDRSKVT 59
            MR P+++ LR+  + K +  +C     K   C  CG +NG+VKK   + L I HD+ +  
Sbjct: 785  MRRPRLDNLRRMQIAKRVNDRCR----KTRTCENCGAVNGVVKKTGTSSLKITHDKFRAF 840

Query: 60   ESLQE-----------FASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCE 104
             +              F  ++   + S   V      A   LN + VL LFKR++D+DCE
Sbjct: 841  NASTSAKKIPPPSKIVFDRSLEEARSSNPEVEKHHKKAQDDLNALRVLNLFKRISDSDCE 900

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L     RPE  +   I  PP+ IRPSV  D S S E+D+T +L  I+Q+N +L+  L
Sbjct: 901  LLGLDPKEARPEMFLWQFIPAPPVCIRPSVGQDAS-STEDDLTAKLGDIVQSNINLKNAL 959

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
            ++       +  W+ +Q+++A YINSDV G+     + +P+ GFVQRLKGKQGRFRGNLS
Sbjct: 960  LKGAPVQTIMECWDYMQLQIAVYINSDVPGLN-KADLGKPIRGFVQRLKGKQGRFRGNLS 1018

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL++ EVA+P  +A+ +TYPE V+ +N EKL+QC++NG  K+PG
Sbjct: 1019 GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVNRYNKEKLQQCVRNGQKKWPG 1078

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  I       + +  YG  +  +A +L+ G IV+RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct: 1079 ANYIIKKGNPLKTMLKYGNLKF-IADQLQEGDIVERHIEDGDIVLFNRQPSLHKLSILSH 1137

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 1138 FAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 1197

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++ + QDF+++++L++ KD F+DR +F+ +C YM     R DLP PA+ KP  LWTGKQ
Sbjct: 1198 PIIGAIQDFISAAYLLSSKDNFFDRRSFTQICLYMLGPQTRFDLPPPAVFKPQMLWTGKQ 1257

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F++L+RP+ +  V VNL    K +       +G++   ++   PND ++  RNSE++ G
Sbjct: 1258 VFNILMRPNKDDPVLVNLDAACKQFKP----PKGNQPRDLD---PNDSWLVVRNSEVMCG 1310

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K+T+G+G KD ++ ++LRD+G  A +  MNRL+KLSARW  N GFSIGI DV P   
Sbjct: 1311 VMDKSTVGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFSNMGFSIGITDVYPSDR 1370

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K  L+   Y  C+  I +Y  G L+  PGCD  QT+E  ++ IL+++R+ AG  C+
Sbjct: 1371 LVQSKNDLVEAAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQQAGDECI 1430

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN+SQMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P
Sbjct: 1431 AQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQP 1490

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             +KGFV NSF+SGL   EF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS  YD+
Sbjct: 1491 PSKGFVRNSFFSGLLPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTGYDD 1550

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +MEGK+ +P++FDR  +  + T     +R LSP ++ E
Sbjct: 1551 TVRNSSQGIVQFQYGDDKLDPVDMEGKA-KPVHFDRTFIHAETTTYKNEERSLSPAEIME 1609

Query: 820  IVEK-------QLAAY---GKE--------------SCSEAFLNSLRKFFEGQQDKLDKK 855
            + E+       +LA Y   G E                +  FL+S++++ + + DKL   
Sbjct: 1610 VCEEMLSKERAKLARYDLMGAELDYMDRSDHGVDQFESARDFLDSIQQYVQTKADKL--- 1666

Query: 856  IKFVEDIGWDDKS--QILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGA 913
               +   G  D S  + ++ + H T  +TE+ L  FI  C  +Y+  +VE G A+GA+GA
Sbjct: 1667 ---ISRGGDSDPSDERTIKGLNH-TGKLTERTLRTFIAECLMKYKKAQVEPGHAVGAVGA 1722

Query: 914  QSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAA 973
            QSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+I+ EL    N  AA
Sbjct: 1723 QSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVISCELVEKRNIVAA 1782

Query: 974  RVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESI----- 1028
            R+ KGRIEKT L  +   ++   T + A + + ++ +TI    L +    ++++I     
Sbjct: 1783 RMAKGRIEKTFLRDIIHYVRETWTGKEAYLTVKINWDTISALELDLTVGKIRQAIENHRR 1842

Query: 1029 VQTPKIKLK--QQHIKV-LDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTV--E 1083
             ++  +KL+  + HI + +D        P  K K+     +  +  P + +K +K +  +
Sbjct: 1843 FKSEDLKLRSTRSHIHIHID------LDPASKEKLSKTEIAATSSDPFLRLKALKRLLPD 1896

Query: 1084 RVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
              V+   +  +  ++ + +     LLVEG GL+  M   GIDG +T+SN++ E ++ LGI
Sbjct: 1897 IQVLGHPQANRAIIRTDDKSDTNTLLVEGYGLRQCMNTVGIDGLRTRSNNVMETREVLGI 1956

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            EAAR  II EI+E MK   M ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LAS
Sbjct: 1957 EAARSTIIQEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLAS 2014

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            FEKTADHLF+A   GR D IEGVSECIIMG  + LGTG +++
Sbjct: 2015 FEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTGAMEV 2056


>gi|402077501|gb|EJT72850.1| hypothetical protein GGTG_09702 [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1461

 Score = 1109 bits (2868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/1323 (46%), Positives = 831/1323 (62%), Gaps = 110/1323 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----- 55
            +R P ++ LR+T + K I ++C     K   CP C  +NG ++K + VL + HD+     
Sbjct: 138  LRRPGIDNLRRTGICKKINEQCR----KVKICPYCDSVNGTIRK-IGVLKLAHDKFVAFN 192

Query: 56   -----SKVT-ESLQEFASAITHTKES----KAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
                  K+  ES   F ++  + K++    +  +  A   LNP+ VL LFK +T TDCE+
Sbjct: 193  KSNSAKKIPPESKIVFDNSFLYAKKAVPDLEKHLRKAMEDLNPLKVLTLFKMITPTDCEL 252

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L     RPE  +   +  PPI IRPSV  D + SNE+DIT +L  I+     ++  L 
Sbjct: 253  LGLDPSEGRPEMFLWQYLPAPPICIRPSVAQDNA-SNEDDITTKLAEIVHIAGLIRGALS 311

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGV--PFSMQVARPLSGFVQRLKGKQGRFRGNL 220
            + ++    +  WE LQ+++A Y+NS+V G+  P   ++ R   GF QRLKGKQGRFRGNL
Sbjct: 312  KGHTIQTIMEQWEFLQLQIAMYVNSEVPGLGQPGFGKMTR---GFCQRLKGKQGRFRGNL 368

Query: 221  SGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYP 280
            SGKRV+++GRTVISPDPNL I +VAIPI +A+ LTYPERV   N+ KL+QC++NGP  +P
Sbjct: 369  SGKRVDFSGRTVISPDPNLGIDQVAIPILVAKNLTYPERVQFQNLAKLQQCVRNGPATWP 428

Query: 281  GARMIRYPDGTARV-LYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIM 337
            GA+ +   DG     +  KF  R+ +A  L+ G +V+RH+EDGD+VLFNRQPSLH++SIM
Sbjct: 429  GAQAVIKQDGDGDYKMNLKFGNRDDVANNLRFGDVVERHIEDGDIVLFNRQPSLHKLSIM 488

Query: 338  CHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKN 397
             H  ++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV++NL TPKN
Sbjct: 489  SHLVKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLATPKN 548

Query: 398  GEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG-DGMDRVDLPTPAILKPVELWT 456
            GE ++A+TQDF+T+++L++ KD F+ R  F+ +C +M  DG + ++LP PAILKP  LWT
Sbjct: 549  GEPIIAATQDFITAAYLLSSKDNFFSRKVFTYLCQHMMVDGKEYLELPPPAILKPCALWT 608

Query: 457  GKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSEL 516
            GKQ+F+VL+RP+    V VNL  K + Y  K+   E  +      +CPNDG++  RNSE+
Sbjct: 609  GKQIFNVLMRPNKQSPVKVNLDAKCREY--KVRPGEAPD------LCPNDGWLIIRNSEI 660

Query: 517  ISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQP 576
            + G + K+ +G G KD ++ V+LRD+G       MNRLAKL AR +GN GFSIG+ DV P
Sbjct: 661  MCGVMDKSIVGGGKKDSIFYVILRDFGPDYAVTAMNRLAKLCARTLGNRGFSIGVGDVFP 720

Query: 577  KKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGK 636
              EL  +K KL+++    C+  I  +  GKLQ   GCD  QTLE  I+ IL+R+R+ AG 
Sbjct: 721  TMELRVEKDKLVADADRKCDDLIDTFKAGKLQKAAGCDLEQTLENSISGILSRVRQQAGA 780

Query: 637  ACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKA 696
             C+ +L   N+PLIM++ GSKGS IN++QMVA VGQQ +GG+R P+GF DRSLPHF + +
Sbjct: 781  KCVETLSRNNAPLIMAKSGSKGSEINVAQMVAAVGQQIIGGQRVPDGFQDRSLPHFHKNS 840

Query: 697  KEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
            ++P +KGFVANSFYSGL  TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS Q
Sbjct: 841  RQPPSKGFVANSFYSGLLPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQ 900

Query: 757  YDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQ 816
            YD++VR +GG IVQF +G D +DP +MEG +  P++FDR     +A      +R L P +
Sbjct: 901  YDDTVRTSGGGIVQFQFGADKLDPVDMEG-TAVPVHFDRTWTHSEALTWDNAERSLLPWE 959

Query: 817  V----SEIVEKQLAAYGK---------------------ESCSEAFLNSLRKFFEGQQDK 851
            +     +++E Q   YG+                        +  F  S+  + +G+ D+
Sbjct: 960  ILQLCDQVIETQRQRYGRYDLVNKSPLPYDDQRDRSIDEHESARNFWKSVYGYIQGRADR 1019

Query: 852  LDKKIKFV-------EDIGWDDKSQILEEVT--HKTSGITEKQLEVFIQTCFSRYRVKRV 902
            L+   + +       +D G DD       V   ++ + +++  L  F+  C  ++   +V
Sbjct: 1020 LEAIRRQIGLSPGGSDDRGADDSIADPARVAQVNRVAKVSQTTLLKFLNLCQEKHERAKV 1079

Query: 903  EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITA 962
            E G A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT 
Sbjct: 1080 EPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKSISTPVITC 1139

Query: 963  ELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINAD 1022
             L  N    AARVVKGRIEKT +  V + I+    +   S+V+  DM  +QD HL I   
Sbjct: 1140 PLMNNKQIEAARVVKGRIEKTYISDVLRFIEDEWKADAGSVVLQFDMAVLQDMHLGIGMA 1199

Query: 1023 IVKESIVQTPKIKLKQQHIKVLDFRKLEIF---PPVD-----------------KSKIHF 1062
             + ESI +  K+KL+   ++ L    +EI      VD                    +  
Sbjct: 1200 DIAESICKHKKLKLEPDDLR-LGSSSIEIVVRNTWVDVAAAKKAARSRSAAMEESPDLLL 1258

Query: 1063 ELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAE 1122
             +  L+ +LP V + G     R +I           +  EK ++ +LVEG GL+A M  E
Sbjct: 1259 RVNHLRRMLPTVPISGYPEASRAII-----------QTSEKSEHTVLVEGYGLRACMTTE 1307

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
            G+ G KTKSN++ E +  LGIEAAR  I  EI   M    M ID RHM LLAD+MT++G+
Sbjct: 1308 GVIGTKTKSNNVMENRDVLGIEAARTTIATEIEAVMG--DMGIDPRHMQLLADVMTYKGD 1365

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            VLGITRFG+ KM  SVL LASFEKT DHLF A+   + DRIEGVSECIIMG  M +GTG 
Sbjct: 1366 VLGITRFGLSKMRDSVLQLASFEKTPDHLFAAAAGMKTDRIEGVSECIIMGQTMSVGTGA 1425

Query: 1243 LKI 1245
             +I
Sbjct: 1426 CQI 1428


>gi|259487939|tpe|CBF87003.1| TPA: hypothetical protein similar to RNA polymerase III (Broad)
            [Aspergillus nidulans FGSC A4]
          Length = 1445

 Score = 1109 bits (2868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1302 (46%), Positives = 836/1302 (64%), Gaps = 87/1302 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKK-AVAVLGIIHDRSKVT 59
            MR P+++ LR+  + K +  +C     K   C  CG +NG+VKK   + L I HD+ +  
Sbjct: 138  MRRPRLDNLRRMQIAKRVNDRCR----KTRTCENCGAVNGVVKKTGTSSLKITHDKFRAF 193

Query: 60   ESLQE-----------FASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCE 104
             +              F  ++   + S   V      A   LN + VL LFKR++D+DCE
Sbjct: 194  NASTSAKKIPPPSKIVFDRSLEEARSSNPEVEKHHKKAQDDLNALRVLNLFKRISDSDCE 253

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L     RPE  +   I  PP+ IRPSV  D S S E+D+T +L  I+Q+N +L+  L
Sbjct: 254  LLGLDPKEARPEMFLWQFIPAPPVCIRPSVGQDAS-STEDDLTAKLGDIVQSNINLKNAL 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
            ++       +  W+ +Q+++A YINSDV G+     + +P+ GFVQRLKGKQGRFRGNLS
Sbjct: 313  LKGAPVQTIMECWDYMQLQIAVYINSDVPGLN-KADLGKPIRGFVQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL++ EVA+P  +A+ +TYPE V+ +N EKL+QC++NG  K+PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVNRYNKEKLQQCVRNGQKKWPG 431

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  I       + +  YG  +  +A +L+ G IV+RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYIIKKGNPLKTMLKYGNLKF-IADQLQEGDIVERHIEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491  FAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++ + QDF+++++L++ KD F+DR +F+ +C YM     R DLP PA+ KP  LWTGKQ
Sbjct: 551  PIIGAIQDFISAAYLLSSKDNFFDRRSFTQICLYMLGPQTRFDLPPPAVFKPQMLWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F++L+RP+ +  V VNL    K +       +G++   ++   PND ++  RNSE++ G
Sbjct: 611  VFNILMRPNKDDPVLVNLDAACKQFKP----PKGNQPRDLD---PNDSWLVVRNSEVMCG 663

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K+T+G+G KD ++ ++LRD+G  A +  MNRL+KLSARW  N GFSIGI DV P   
Sbjct: 664  VMDKSTVGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFSNMGFSIGITDVYPSDR 723

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K  L+   Y  C+  I +Y  G L+  PGCD  QT+E  ++ IL+++R+ AG  C+
Sbjct: 724  LVQSKNDLVEAAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQQAGDECI 783

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN+SQMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P
Sbjct: 784  AQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQP 843

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             +KGFV NSF+SGL   EF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS  YD+
Sbjct: 844  PSKGFVRNSFFSGLLPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTGYDD 903

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +MEGK+ +P++FDR  +  + T     +R LSP ++ E
Sbjct: 904  TVRNSSQGIVQFQYGDDKLDPVDMEGKA-KPVHFDRTFIHAETTTYKNEERSLSPAEIME 962

Query: 820  IVEK-------QLAAY---GKE--------------SCSEAFLNSLRKFFEGQQDKLDKK 855
            + E+       +LA Y   G E                +  FL+S++++ + + DKL   
Sbjct: 963  VCEEMLSKERAKLARYDLMGAELDYMDRSDHGVDQFESARDFLDSIQQYVQTKADKL--- 1019

Query: 856  IKFVEDIGWDDKS--QILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGA 913
               +   G  D S  + ++ + H T  +TE+ L  FI  C  +Y+  +VE G A+GA+GA
Sbjct: 1020 ---ISRGGDSDPSDERTIKGLNH-TGKLTERTLRTFIAECLMKYKKAQVEPGHAVGAVGA 1075

Query: 914  QSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAA 973
            QSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+I+ EL    N  AA
Sbjct: 1076 QSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVISCELVEKRNIVAA 1135

Query: 974  RVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESI----- 1028
            R+ KGRIEKT L  +   ++   T + A + + ++ +TI    L +    ++++I     
Sbjct: 1136 RMAKGRIEKTFLRDIIHYVRETWTGKEAYLTVKINWDTISALELDLTVGKIRQAIENHRR 1195

Query: 1029 VQTPKIKLK--QQHIKV-LDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTV--E 1083
             ++  +KL+  + HI + +D        P  K K+     +  +  P + +K +K +  +
Sbjct: 1196 FKSEDLKLRSTRSHIHIHID------LDPASKEKLSKTEIAATSSDPFLRLKALKRLLPD 1249

Query: 1084 RVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
              V+   +  +  ++ + +     LLVEG GL+  M   GIDG +T+SN++ E ++ LGI
Sbjct: 1250 IQVLGHPQANRAIIRTDDKSDTNTLLVEGYGLRQCMNTVGIDGLRTRSNNVMETREVLGI 1309

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            EAAR  II EI+E MK   M ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LAS
Sbjct: 1310 EAARSTIIQEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLAS 1367

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            FEKTADHLF+A   GR D IEGVSECIIMG  + LGTG +++
Sbjct: 1368 FEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTGAMEV 1409


>gi|380495147|emb|CCF32618.1| RNA polymerase Rpb1 [Colletotrichum higginsianum]
          Length = 1456

 Score = 1108 bits (2867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 602/1310 (45%), Positives = 835/1310 (63%), Gaps = 78/1310 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----S 56
            +R P ++ LR++ + K I ++C     K   C  CG + G ++K V VL + HD+    +
Sbjct: 136  LRRPLLDNLRRSQICKRINEQCR----KVKNCMYCGSVQGQIRK-VGVLKLAHDKFVTYN 190

Query: 57   KVT-------ESLQEFASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCEV 105
            K T       ES  +F  + +  +++ A ++     A   +NP+ VL LFK ++ TDCE+
Sbjct: 191  KSTSAKKVPPESKIKFDESFSEARKNNAELDKHLRKAMEDMNPLRVLNLFKMISPTDCEL 250

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L     RPE  I   +  PP+ IRPSV  D + SNE+DIT +L  I+  +  ++  L 
Sbjct: 251  LGLDPAEGRPEMFIWQFLPAPPVCIRPSVAQDNA-SNEDDITTKLADIVWVSGMIRSALQ 309

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            + +     +  WE LQ++VA Y+NSDV G+       + + GF QRLKGKQGRFRGNLSG
Sbjct: 310  KGSPVQTIMEQWEYLQLQVAMYVNSDVPGLQ-QPGFGKAVRGFCQRLKGKQGRFRGNLSG 368

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I +VA+P  +A+ LTYPERVSD+NIEKL++C++NGP  +PGA
Sbjct: 369  KRVDFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVSDYNIEKLKECVRNGPSIWPGA 428

Query: 283  RMIRYPDGTARVLYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
            + +   D     +  KF  RNQ+A +LK G +V+RHLED D+VLFNRQPSLH++SIM H 
Sbjct: 429  QQVIKKDDGGYKISLKFGNRNQVAQDLKIGDVVERHLEDNDIVLFNRQPSLHKLSIMSHL 488

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
             ++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV++NL TPKNGE 
Sbjct: 489  VKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLATPKNGEP 548

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A+TQDF+T+++L++ KD F+DR  F+ +C +M DG   +DLP PA+LKP  LWTGKQ+
Sbjct: 549  VIAATQDFITAAYLLSSKDNFFDRKTFTYICMHMMDGKVHLDLPPPAVLKPKALWTGKQV 608

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            FS+++RP+ +  V +NL  K + Y  +          +   M P D ++  RNSE++ G 
Sbjct: 609  FSMMMRPNKDSPVKINLDAKCREYKAR--------AGQCPDMDPEDAWLVIRNSEVMCGV 660

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + K+T+G+G KD ++ V+LRD+G  A    MNRLAKL AR + N GFSIGI DV P ++L
Sbjct: 661  MDKSTVGDGKKDSVFYVILRDFGPDAAVVTMNRLAKLCARHLTNRGFSIGIGDVFPTEKL 720

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
             DKK  L+       +V I +Y + KL+   GC   QTLE  I+ +L+++R  AG  C+ 
Sbjct: 721  LDKKRTLVKNASIEVDVLIDKYKKNKLEKATGCSMEQTLENSISGLLSKLRTQAGSHCIE 780

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
            +L   N+PL+M++CGSKGS IN++QMVA VGQQ +GG+R  +GF DR+LPHF + A +P 
Sbjct: 781  TLSKNNAPLVMAKCGSKGSNINVAQMVALVGQQIIGGKRVADGFQDRTLPHFHKNAPQPP 840

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSFYSGL  TEF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD++
Sbjct: 841  SKGFVENSFYSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDT 900

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQV--- 817
            VR +GG IVQF +G D +DP +ME  S +P+NFDR     +       +R L P ++   
Sbjct: 901  VRTSGGGIVQFQFGADKLDPVDMEA-SAKPVNFDRTFSHAENLTWDNNERALLPDEIVKY 959

Query: 818  -SEIVEKQLAAYGKESC---------------------SEAFLNSLRKFFEGQQDKLDKK 855
               ++ ++ A Y ++S                      +  FL SL  +   + +KL + 
Sbjct: 960  CDNMLSRERARYPRKSLLGDLTLDYDNEEERYTDEHEGARDFLRSLESYVGARAEKLRRL 1019

Query: 856  IKFVEDIGWDDKSQI---LEEVTH------KTSGITEKQLEVFIQTCFSRYRVKRVEAGT 906
            ++        D   +    +EV H      K + ++E  L++FI+ C  +Y+   VE G 
Sbjct: 1020 MEMTGLTATADSMDVDVDEDEVRHKKAFADKVAKMSETTLKLFIRLCLEKYKKAHVEPGH 1079

Query: 907  AIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELEC 966
            A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT  L  
Sbjct: 1080 AVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKVISTPVITCPLVQ 1139

Query: 967  NDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKE 1026
            N    AAR+VK RIEKT +  +   I+    +   S+V+ +DM+ + D  L I    V E
Sbjct: 1140 NREMTAARIVKARIEKTFVEDILSYIEDEWFAESGSVVLKVDMDALSDMQLGITLGDVAE 1199

Query: 1027 SIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNV--LPMVIVKG---IKT 1081
            +I +  K+K+ +  + +   R +EI   +D+S         K V  L  ++V+     +T
Sbjct: 1200 AICKHKKMKVSRSDMHIGAGR-IEIRVRLDESAAAKRAIKAKPVDELGDLLVRANYLRRT 1258

Query: 1082 VERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTL 1141
            +  V I+   +  R + +  E++ + +LVEG GL A M  EG++G + KSN++ E +  L
Sbjct: 1259 IPTVAISGYPEATRAIIQTSEQETHTVLVEGYGLLACMNTEGVEGRRVKSNNVMECRDVL 1318

Query: 1142 GIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLML 1201
            GIEAAR  I  EI E M    M+ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL L
Sbjct: 1319 GIEAARSTIAYEIGEVMG--DMNIDPRHMQLLADVMTYKGEVLGITRFGLSKMRDSVLQL 1376

Query: 1202 ASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAV 1251
            ASFEKT DHLF A+   + D+IEGVSECIIMG  M +GTG   + +R A+
Sbjct: 1377 ASFEKTPDHLFEAAAGMKTDQIEGVSECIIMGQTMTVGTGAFHVVRRLAL 1426


>gi|407043155|gb|EKE41776.1| DNA-directed RNA polymerase III largest subunit, putative [Entamoeba
            nuttalli P19]
          Length = 1379

 Score = 1108 bits (2867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/1280 (46%), Positives = 825/1280 (64%), Gaps = 63/1280 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----- 55
            MRN K + + +T L+++++ +C    +    CP C  ING +KK    L ++HD+     
Sbjct: 147  MRNKKTDTVARTYLVRALIAQCRKHYNS---CPHCNAINGSIKK-YGNLRLVHDKYHRDP 202

Query: 56   --SKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SE 110
              +++ E    F  +I   K+  A VN A   L+P  VL +F+ +   D E +     + 
Sbjct: 203  TITEMNEFYDGFEESIKLDKDINAFVNNAQEDLDPRKVLSIFRSLIREDIETMDFDPDNA 262

Query: 111  RPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             PE +I+T++ VPPIAIRPSV MDG + SNE+D+T +LK I++ N  +++ +    S ++
Sbjct: 263  PPENMILTSVPVPPIAIRPSVAMDGGNASNEDDLTTQLKEIMECNDRIKEMIKRGASPYQ 322

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
                W+ L V V+ +INS++ G        +PL    QRLKGK GRFRGNL GKRV+++G
Sbjct: 323  YYDSWDQLTVAVSMFINSELPGCD---DKGKPLRAICQRLKGKHGRFRGNLLGKRVDFSG 379

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYP 288
            RTVISPDPNL I ++ +P  MA  LTYPERV+ HNI+KLRQ + NG + YPG   +I   
Sbjct: 380  RTVISPDPNLDIEQIGVPKLMAVKLTYPERVTKHNIDKLRQLVINGSNNYPGCNSIIGGS 439

Query: 289  DGTARVLYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW 346
            DG  R +  K   R + A +LK G IV+RHLED D+VLFNRQPSLHR+SIMCHRA+I+PW
Sbjct: 440  DGLRRSMCIKLEMREKFAKDLKIGDIVERHLEDNDIVLFNRQPSLHRISIMCHRAKILPW 499

Query: 347  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQ 406
            RTLRFNE VC PYNADFDGDEMN+HVPQTEEAR E L+LM    NL TP+ G++++A TQ
Sbjct: 500  RTLRFNECVCTPYNADFDGDEMNLHVPQTEEARAECLMLMHSAKNLQTPRTGQMIIAETQ 559

Query: 407  DFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIR 466
            DFLT+S+L+T KD   +        C+  +    +DLPTPA LKP +LWTGKQL+ + ++
Sbjct: 560  DFLTTSYLLTSKDFVIEEEDMMQWACWFHNAGTEIDLPTPAYLKPKKLWTGKQLYGLALK 619

Query: 467  PHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATL 526
            P+ +  V ++L V  K YS      EG      + MC  DG++ F+NS+L+ GQ+ K+ +
Sbjct: 620  PNKHEGVNISLDVPSKLYSK-----EG------KWMCVKDGWICFKNSQLLCGQIEKSII 668

Query: 527  GNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGK 586
            G+GNK GL+ ++LRDYG   ++  M  +++  AR++G++GFSIGI DV P  +L+  K +
Sbjct: 669  GSGNKTGLFHLILRDYGTLESAKIMAHISRFCARFLGDYGFSIGISDVTPSADLTQMKEE 728

Query: 587  LISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRN 646
            L+SE Y+ C+  I++Y  GK +++ G    QTLEA++ + L++IRE AGK C+  L   N
Sbjct: 729  LVSEGYKKCDQFIEDYKSGKQEVQAGSTPEQTLEALLNNELSQIRERAGKRCIEELKSDN 788

Query: 647  SPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVA 706
            SPL+M+  GSKGS INISQM+ACVGQQ+V G R  +GFI RSLPHF   ++ P AKGFV 
Sbjct: 789  SPLVMALSGSKGSVINISQMIACVGQQTVNGGRVSDGFISRSLPHFALHSRTPQAKGFVK 848

Query: 707  NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGG 766
            NSF++GL+ATEFFFHTMGGREGLVD+AVKTA+TGYM RRL+KALEDL + YD +VR+A  
Sbjct: 849  NSFFTGLNATEFFFHTMGGREGLVDSAVKTAETGYMQRRLMKALEDLHVHYDGTVRSASL 908

Query: 767  CIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLA 826
             +++F YGDDG+DP  +E     P+N + +L  ++    P  + Y++P    E  +K+  
Sbjct: 909  TVIEFKYGDDGLDPLKVESDK-YPINLESVLSNLQQNQKPDDE-YITP----ESFDKEYN 962

Query: 827  AYGKES--CSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEK 884
            A   ++   SE +   +  F + +++++ +         ++  SQ  E   H   GIT +
Sbjct: 963  AIISQTKIVSELWKQQIETFLKEKKEEMTEV--------YNHYSQ--ENAQHGLCGITIQ 1012

Query: 885  QLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 944
             L+ FI  C  +      EAGT +GA+  QS+GEP TQM LKTFHFAGVASMNI  GVPR
Sbjct: 1013 TLKDFISICQEKGLRSVCEAGTPVGALAGQSMGEPSTQMVLKTFHFAGVASMNIALGVPR 1072

Query: 945  IKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIV 1004
            IKEIIN +K+I TPI+TA+L  + +  +AR+VKGRIE T L ++AKS+KIV     A I 
Sbjct: 1073 IKEIINASKKIQTPIVTAKLVNSQDVTSARIVKGRIEATRLKEIAKSVKIVFKPAEAYIS 1132

Query: 1005 IALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFEL 1064
            + LD ETI+   L    + V++ ++    +KLK   + + + +KL ++     + + F L
Sbjct: 1133 VKLDFETIKQLELECTIEKVQDVLLNYRGLKLKDNQVIIRNKQKLRVYVDKSSTSLLFAL 1192

Query: 1065 YSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGI 1124
             SL+N L  VIV GI+   R VI            N  K  + LLVEG+ L  VMG  G+
Sbjct: 1193 NSLRNQLLEVIVCGIENTGRAVI------------NKNKGSFELLVEGSELLKVMGTPGV 1240

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
             G +T SNHI  V++ LGIEAAR  II EI   M A+G+SID RH++LL+DLMTF+G +L
Sbjct: 1241 IGEETTSNHIAVVEKVLGIEAARSTIISEIKNVMDAYGLSIDVRHLLLLSDLMTFKGVIL 1300

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
            GITR+GI KM  SV   ASFE+T DHLF+A+V+ R D I+GVSE II+G  + LGTG+++
Sbjct: 1301 GITRYGISKMKDSVFTFASFERTNDHLFDAAVHSRKDEIKGVSESIIVGNQVGLGTGLMQ 1360

Query: 1245 IRQRDAVPPMLKYGAPDPIM 1264
            I   D   P+      DP+ 
Sbjct: 1361 ILY-DPPKPIFLQRKYDPLF 1379


>gi|167537656|ref|XP_001750496.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771036|gb|EDQ84710.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1414

 Score = 1107 bits (2863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/1291 (45%), Positives = 805/1291 (62%), Gaps = 82/1291 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-AVLGIIHDR-SKV 58
            +++P +E   +  ++K +  +C      A  CP C   NG+VK+   +VL I+H+R +K 
Sbjct: 129  LQDPNLERGPRAAIIKEVGDQCR---KNAASCPHCSACNGVVKRPKNSVLRIVHERFTKK 185

Query: 59   TESLQE-----FASAITHTKESKAAVNVATYI--LNPVNVLFLFKRMTDTDCEVLYLSE- 110
               L+E     F  A +  K+  A++        LNP+  L L + + D DC +L +   
Sbjct: 186  NNRLREAHHQLFQEAASEVKDLSASLKADKVQDELNPLRALQLLRAVPDQDCPLLDMDPF 245

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAF 168
              RPEKLI+TN+ VPP          GS SNE+ +T  L       A+ + E        
Sbjct: 246  CGRPEKLILTNLIVPP---------GGSGSNEDPLTTGL-------AAKRVEDAGGQKIE 289

Query: 169  KSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYT 228
            + +  WE LQV VA Y N D+ G+P  ++  +   GF QRLKGKQGRFRGNLSGKRV Y+
Sbjct: 290  RIMQTWEALQVHVALYFNGDLPGLPKDLKPKKAPRGFYQRLKGKQGRFRGNLSGKRVNYS 349

Query: 229  GRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-RY 287
            GRTVISPDPN  I EV +P  + +ILTYPE V+D+NI++LR  ++NGPD YPGA ++ + 
Sbjct: 350  GRTVISPDPNASIDEVCVPYHVCKILTYPEMVNDYNIQRLRAAVENGPDNYPGAVLLEKS 409

Query: 288  PDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
             D     L    R + A EL  G IV RHL DGD  LFNRQPSLHRMSIMCHR +  PWR
Sbjct: 410  RDKRTYDLAHCNRQKSARELAKGDIVRRHLIDGDYALFNRQPSLHRMSIMCHRVKARPWR 469

Query: 348  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQD 407
            T RFNE VC PYNADFDGDEMN+HVPQTEEA+ EA LL+   +NLCTP NGE L+A+ QD
Sbjct: 470  TFRFNECVCKPYNADFDGDEMNLHVPQTEEAKAEAALLLRTTHNLCTPCNGEPLIAACQD 529

Query: 408  FLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRP 467
            F+T  FLI++KDTF+ +A    M C   DG  ++ LP PAI+KPV +WTGKQ+FS+++RP
Sbjct: 530  FITGCFLISQKDTFFTKAKVMQMVCAFSDGSLKISLPVPAIVKPVAMWTGKQVFSMMMRP 589

Query: 468  HANMRVYVNLTVKEKTYSNKLIRTE-----GDEEIRIETMCPNDGFVYFRNSELISGQLG 522
              +    V+LT K K++     ++E      D  I   ++CP DGFV  R+S L+ G L 
Sbjct: 590  SKDDPHQVDLTEKNKSFDKNYEKSEVKKLGRDLTIGERSLCPEDGFVIIRSSRLLCGFLD 649

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            KA +G  +K  ++  LLRDY A A    M R+ KL+ R++   GFSIG++DV P +EL+D
Sbjct: 650  KANVGE-SKSTIFYRLLRDYSAQAAVDGMLRMTKLTTRYLMERGFSIGLEDVTPPQELTD 708

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
            +K  LI   ++ C+  I EY  G+++ +PG  A +TLE+ I   LN++RE+AG  C   L
Sbjct: 709  EKAVLIKTAFDKCSGYIAEYKSGRIECQPGQSAEETLESFIRKDLNQVREEAGSLCRKVL 768

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               N+P IM++CGSKGSPIN++QM+A VGQQ + G R PNGF DR LPHF R AK P AK
Sbjct: 769  SPYNAPKIMAKCGSKGSPINMAQMIALVGQQILNGSRVPNGFEDRPLPHFRRFAKVPMAK 828

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFY+GL+  EFFFHTM GREGLVDTAVKTA+TGYM RRL+KALEDL + YD +VR
Sbjct: 829  GFVANSFYTGLTPAEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLVVHYDTTVR 888

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKAT----CPPAGQRYLSPQQV- 817
            N+ G ++QF YGDDG+DP  ME      ++ + L + V A+     PP     L P  V 
Sbjct: 889  NSSGHMIQFCYGDDGLDPQGMETDDCA-VDLEHLFVHVLASDRDGPPPV---TLQPAAVI 944

Query: 818  ----SEIVEKQLAAYGKESC----------SEAFLNSLRKFFEGQQDKLD---KKIKF-- 858
                S + E+ L  Y    C             FLN LR F E +  +L    ++I    
Sbjct: 945  STFESILKEQDLRDYDHPYCPLGLDVSADKEHFFLNQLRVFLEKRAQQLAEIRQRIGLAP 1004

Query: 859  -VEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIG 917
             +E    DD ++    + +    +T + + +F++    ++R   VE GTA+GAIGAQSIG
Sbjct: 1005 ALEAPAEDDPAK--RHLVNNLMSVTREDMRIFVEKALFKFRRTVVEPGTAVGAIGAQSIG 1062

Query: 918  EPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVK 977
            EPGTQMTLKTFHFAGVA+MN+T GVPRIKEIIN AK ISTP+ITA+LE +  E+ AR VK
Sbjct: 1063 EPGTQMTLKTFHFAGVAAMNVTLGVPRIKEIINAAKNISTPVITAKLENDREESFARQVK 1122

Query: 978  GRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLK 1037
             R+E   LG+VA    +V       + + L+++ IQ  HL +  + + +SI  +   K+K
Sbjct: 1123 ARLETLTLGEVADHFDVVCNEDGGYVRVKLNLKVIQRKHLEVTMNTIIDSIAASRLTKIK 1182

Query: 1038 QQHIKVLDFRKLEIFPPVDKSKIHFELYSLK---NVLPMVIVKGIKTVERVVIAEKEKEK 1094
             +H+ V+     +  P  D   +   +++L+   NVLP  ++ G+  + R +IA+   E 
Sbjct: 1183 HEHLSVMSSEVFQAVPVCDSKTVANRVHALRHLANVLPNCVITGLPGIRRAIIAKDPNE- 1241

Query: 1095 RKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEI 1154
                       + + ++GT L+ VM   G+ G     NH+ E++QTLGIEAAR  I+D++
Sbjct: 1242 ---------GTFSIAIDGTDLKGVMATPGVIGTTVDCNHVMELEQTLGIEAARSIIMDQV 1292

Query: 1155 NETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA 1214
               M  +G+ I+ RH ML++DLMTF+GEVLGITRFGI KM +SV MLASFEKT DHLF+A
Sbjct: 1293 QYVMSNYGIHINPRHTMLMSDLMTFKGEVLGITRFGIAKMKESVFMLASFEKTTDHLFDA 1352

Query: 1215 SVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            ++ G  D ++GVSECII+G+PM +GTG+ K+
Sbjct: 1353 ALRGTTDSVDGVSECIILGVPMRIGTGLFKL 1383


>gi|429851154|gb|ELA26368.1| DNA-directed RNA polymerase iii largest [Colletotrichum
            gloeosporioides Nara gc5]
          Length = 1456

 Score = 1107 bits (2863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/1321 (45%), Positives = 840/1321 (63%), Gaps = 100/1321 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----S 56
            +R P ++ LR++ + K I ++C     K   C  CG + G ++K V VL + HD+    +
Sbjct: 136  LRRPLLDNLRRSQICKRINEQCR----KVKNCMYCGSVQGQIRK-VGVLKLAHDKFVTYN 190

Query: 57   KVT-------ESLQEFASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCEV 105
            K T       ES  +F  + +  +++ A ++     A   +NP+ VL LFK ++ TDCE+
Sbjct: 191  KSTSAKKVPPESKIKFDESFSEARKNNAELDKHLRKAMEDMNPLRVLNLFKMISPTDCEL 250

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L     RPE  I   +  PP+ IRPSV  D + SNE+DIT +L  I+  +  ++  L 
Sbjct: 251  LGLDPAEGRPEMFIWQFLPAPPVCIRPSVAQDNA-SNEDDITTKLADIVWVSGMIRSALQ 309

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            + +     +  WE LQ++VA Y+NSDV G+       + + GF QRLKGKQGRFRGNLSG
Sbjct: 310  KGSPIQTIMEQWEYLQLQVAMYVNSDVPGLQ-QPGFGKAVRGFCQRLKGKQGRFRGNLSG 368

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I +VA+P  +A+ LTYPERVSD+NI+KL++C++NGP+ +PGA
Sbjct: 369  KRVDFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVSDYNIKKLKECVRNGPNIWPGA 428

Query: 283  R-MIRYPDGTARV-LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
            + +I+  DG  ++ L    RNQ+A +LK G +V+RHLED D+VLFNRQPSLH++SIM H 
Sbjct: 429  QQVIKNDDGGYKISLRFGNRNQVAQDLKIGDVVERHLEDNDIVLFNRQPSLHKLSIMSHL 488

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
             ++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV++NL TPKNGE 
Sbjct: 489  VKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLATPKNGEP 548

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A+TQDF+T+++L++ KD F+DR  F+ +C +M DG   +DLP PAILKP  LWTGKQ+
Sbjct: 549  VIAATQDFITAAYLLSGKDRFFDRKTFTYICMHMMDGNVHLDLPPPAILKPQALWTGKQV 608

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            FS+++RP+ +  V VNL  K + Y  +          +   M PNDG++  RNSE++ G+
Sbjct: 609  FSIMMRPNKDSPVKVNLDAKCREYKAR--------PGQCPDMDPNDGWLVVRNSEVMCGR 660

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + K+T+G+G KD ++ V+LRD+G  A    MNRLAKL AR + N GFSIG+ DV P + L
Sbjct: 661  MDKSTVGSGKKDSVFYVILRDFGPDAAVVTMNRLAKLCARHLTNRGFSIGVGDVFPTQLL 720

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
             +KK K+I +  +  +  I +Y +GKL+   GC   +TLE  I+ +L+++R  AG  C+ 
Sbjct: 721  LEKKSKMIQDANKDVDELIDKYKKGKLEKATGCSMEETLENSISGLLSKVRTQAGSHCIE 780

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
            +L   N+PL+M++ GSKGS IN++QMVA VGQQ +GG+R  +GF DR+LPHF + A +P 
Sbjct: 781  TLSRNNAPLVMAKSGSKGSEINVAQMVALVGQQIIGGKRVADGFQDRTLPHFHKNAPQPP 840

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFVANSFYSGL  TEF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD++
Sbjct: 841  SKGFVANSFYSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDT 900

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEI 820
            VR +GG IVQF +G D +DP +ME  S +P+NFDR     +       +  L P ++ + 
Sbjct: 901  VRTSGGGIVQFQFGADKLDPVDMEA-SAKPVNFDRTFSHAENLTWNNDEAALLPDEIVKY 959

Query: 821  VEKQL----AAYGKESC---------------------SEAFLNSLRKFFEGQQDKLDKK 855
             +  L    A Y +++                      +  FL SL  +  G+ +KL + 
Sbjct: 960  CDSMLSVERARYPRKALVGDDVLDYDNEEDKFTDEHEGARDFLRSLESYVAGRANKLRRV 1019

Query: 856  IKFV------EDIGWD-DKSQI--LEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGT 906
            ++        E +  D D+S++   +    K + ++E  L +FI+ C  +Y+   VE G 
Sbjct: 1020 MELTGLTAGAESMEVDVDESEMKAKKAFADKVAKVSETTLRMFIRLCLEKYKKAHVEPGH 1079

Query: 907  AIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELEC 966
            A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT  L  
Sbjct: 1080 AVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKTISTPVITCPLVQ 1139

Query: 967  NDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKE 1026
            N    AAR+VK RIEKT +  +   I+    +   ++V+ +DM+ + +  L I    V E
Sbjct: 1140 NRELTAARIVKARIEKTYVEDILSYIEDEWFADSGNVVLQVDMDALSNMQLGIGLGDVAE 1199

Query: 1027 SIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKI------------HFELY----SLKNV 1070
            +I +  K+K+ +Q + +   R +EI   +D+S              H +L      L+  
Sbjct: 1200 AICKHKKMKISRQDMHIGPGR-IEIRVRLDESAASKRSVKAKPVDEHGDLLVRANYLRRT 1258

Query: 1071 LPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTK 1130
            +P V + G     R +I   E+E   V           LVEG GLQ  M  EG++G + K
Sbjct: 1259 IPTVSISGYPEATRAIIQTSEQETHTV-----------LVEGYGLQKCMNTEGVEGRRVK 1307

Query: 1131 SNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFG 1190
            SN++ E +  LGIEAAR  I  EI E M    M ID RHM LLAD+MT++GEVLGITRFG
Sbjct: 1308 SNNVMECRDVLGIEAARTTIAHEIGEVMG--DMGIDPRHMQLLADVMTYKGEVLGITRFG 1365

Query: 1191 IQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDA 1250
            + KM  SVL LASFEKT DHLF A+   + D+IEGVSECIIMG  M +GTG   + +R A
Sbjct: 1366 LSKMRDSVLQLASFEKTPDHLFEAAAGMKTDQIEGVSECIIMGQTMSVGTGAFHVVRRLA 1425

Query: 1251 V 1251
            +
Sbjct: 1426 L 1426


>gi|327276885|ref|XP_003223197.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Anolis
            carolinensis]
          Length = 1337

 Score = 1105 bits (2859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1233 (48%), Positives = 811/1233 (65%), Gaps = 61/1233 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            ++ P +  L+K  L K + +KC     K   CP CG  NG VKK   +L IIH++ K T+
Sbjct: 129  LKRPGLTYLQKRGLKKKVSEKCR----KKNTCPHCGAFNGTVKKC-GLLKIIHEKYKTTK 183

Query: 61   SL---------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL--- 108
             +         Q F +AI H KE ++ +  A   LNP+ VL L KR+   D  +L +   
Sbjct: 184  KIMDPIVSNFIQSFDTAIEHNKEIESLLGKAQENLNPLVVLNLLKRIPAEDIPLLLMNPE 243

Query: 109  SERPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
            S +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  SGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI+ +R+ ++NGP+ +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANIDLMRKLVRNGPEAHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGD+VLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP PAILKPV LWTGKQ+F 
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKTCQIIASILVGKDEKIKVHLPPPAILKPVTLWTGKQVFG 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V+++P  +  V  NL  K K Y  K            E +C ND +V   NSEL+SG + 
Sbjct: 603  VILKPSKSCPVKANLRTKGKQYCGKG-----------EDLCTNDSYVTIHNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G    +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+    GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALKTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFQKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  ++A  P   +  LS  ++    E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVYPSRSEPALSKNELMLTAE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++KF +   +K+ K     +  G +D       V ++   IT
Sbjct: 951  SIMKKNEFLCCQDSFLQEIKKFIKNMSEKIKKT---RDKYGINDNGTTEPYVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
              QLE F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQLEKFLETCREKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA L+ +D+ + AR+VKGRIEKTLLG++++ I+ V       
Sbjct: 1068 PRIKEIINASKAISTPIITAHLDTDDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP-PVDKSKIH 1061
            I++ L +E I+   L +NA+ V+ SI  + K+++K   + V     + + P    KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSICVS-KLRVKPGDVAVHGEAVVCVTPRESSKSSMY 1186

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + L SLK  LP V+V+GI  V R VI         + E   K+KY+LLVEG  L+AVM  
Sbjct: 1187 YVLQSLKEELPKVVVQGIPEVARAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G  T SN+ +EV++TLGIEA+R  II+EI  TM  HGMSID+RH+MLL+DLMT++ 
Sbjct: 1239 HGVKGTSTTSNNTYEVEKTLGIEASRTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKA 1298

Query: 1182 E------VLGITRF------GIQKMDKSVLMLA 1202
                   ++GI  F      G    D S++  A
Sbjct: 1299 PRALCYVIIGILEFYNRWSLGFGSCDSSIMSTA 1331


>gi|242807568|ref|XP_002484983.1| DNA-directed RNA polymerase III largest subunit, putative
            [Talaromyces stipitatus ATCC 10500]
 gi|218715608|gb|EED15030.1| DNA-directed RNA polymerase III largest subunit, putative
            [Talaromyces stipitatus ATCC 10500]
          Length = 1441

 Score = 1105 bits (2858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/1305 (44%), Positives = 842/1305 (64%), Gaps = 95/1305 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKV- 58
            MR P+M+ LR+  + K +V++C     K  +CPRCG +NG+VKKA  A L I+H++ +  
Sbjct: 137  MRRPRMDNLRRLQIAKRVVERCK----KTRECPRCGAVNGVVKKAGTAALKIVHEKFRYY 192

Query: 59   --TESLQE--------FASAITHTKESKAAVN----VATYILNPVNVLFLFKRMTDTDCE 104
              + ++++        F +++T  + S   V+     A   L+ + V+ LFK++T+ DCE
Sbjct: 193  NQSTAMKKVAPISKIVFDNSLTEARASNPDVDRFYKKAQDDLHALRVMNLFKKITNADCE 252

Query: 105  VLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L     RPE  +   I  PP  IRPSV  DG+ SNE+D+T +L  I+Q+N +L+  L
Sbjct: 253  LLGLDPTEVRPETFLWQYIPAPPNCIRPSVSQDGA-SNEDDLTAKLGDIVQSNITLRNNL 311

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
             +       +  W+ + +++A YIN DV G+    +  +P    V RLKGKQGRFRGNLS
Sbjct: 312  RKGAPVPTLMECWDYMTLQIAIYINGDVPGL--KGEAGKPTRSLVSRLKGKQGRFRGNLS 369

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL+I EVA+P  +A+ +TYPE V+ +N+E LR+ ++NG +K+PG
Sbjct: 370  GKRVDFSGRTVISPDPNLRIDEVAVPELVAKNMTYPEIVTRYNLEYLRKLVRNGINKWPG 429

Query: 282  AR-MIRYPDGTARVLYGKFR--NQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMC 338
            A+ +I+   G    L    R  + +A +L+ G +V+RHL DGD+ L+NRQPSLH++SI+ 
Sbjct: 430  AKKVIKKDSGLTISLKHSARSLDLIAAQLQIGDLVERHLVDGDIALYNRQPSLHKLSILS 489

Query: 339  HRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNG 398
            H  ++ P+RT R NE VCNPYNADFDGDEMN+H+PQTEEAR+EA+ LMGV+NNL TPKNG
Sbjct: 490  HFVKVRPYRTFRMNECVCNPYNADFDGDEMNLHIPQTEEARSEAMELMGVKNNLVTPKNG 549

Query: 399  EILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGK 458
            E ++ + QDF++++++++ KD F+DR +F+ +C YM     R DLP PAILKP  LWTGK
Sbjct: 550  EPIIGAIQDFISAAYMLSSKDNFFDRRSFTQICLYMLGPETRFDLPPPAILKPQMLWTGK 609

Query: 459  QLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELIS 518
            Q+F++L+RP+ +  V VN+    + +       +  ++ + + + PNDG++  RNSE++ 
Sbjct: 610  QVFNILMRPNKDDPVKVNIDAACREF-------KAPKDGQPKDLDPNDGWLVIRNSEIMC 662

Query: 519  GQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKK 578
            G + K+T+G+G KD ++ ++LRD+G  A +  MNRL+KL ARW  N GFSIGI DV P +
Sbjct: 663  GVMDKSTIGSGKKDNVFYIMLRDFGPPAAAEGMNRLSKLCARWFTNVGFSIGITDVYPSE 722

Query: 579  ELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKAC 638
            +L   K +L+   Y  C+  I +Y  GKL+   GCD  QT+E+ ++ IL+++R+ AG+ C
Sbjct: 723  KLVQTKNELVERAYAACDEVIAKYKAGKLEKLAGCDELQTMESQVSGILSKVRQQAGEEC 782

Query: 639  MGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKE 698
            +  L   N+PLIM+  GSKGS IN+SQMVA VGQQ +   R  +GF DR+LPHFP+ A+ 
Sbjct: 783  IAQLSKYNAPLIMATSGSKGSSINVSQMVAVVGQQIISSERVQDGFQDRTLPHFPKNARH 842

Query: 699  PAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYD 758
            P +KGFV NSF+S LS TEFFFH M GREGL+DTAVKTA+TGYMSRRL+K+LEDLS +YD
Sbjct: 843  PPSKGFVRNSFFSSLSPTEFFFHAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSAKYD 902

Query: 759  NSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVS 818
             ++R +   IVQF YG D +DP +MEGK+ +P++FDR      A      +R L P ++ 
Sbjct: 903  GTIRTSSASIVQFSYGGDDLDPVDMEGKA-KPVHFDRTYNHAMAITHNNNERGLEPSEIR 961

Query: 819  EIVEKQLAA----------------------YGKE--SCSEAFLNSLRKFFEGQQDKLDK 854
             I E+ LA                       YG +    + AFL+S+++  E +  +++K
Sbjct: 962  TITEELLAKERQRYVRKGLFGEDLPYKDDSDYGTDQFESARAFLDSIQEHIEKKAVEMEK 1021

Query: 855  KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQ 914
             I     +  ++    L+ V      ++E+ L  FI++C S+Y   ++E G A+GA+GAQ
Sbjct: 1022 AINSA--LSGEEARMALDHV----GKLSERSLRYFIKSCLSKYEKAKIEPGHAVGAVGAQ 1075

Query: 915  SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAAR 974
            SIGEPGTQMTLKTFHFAGV ++ +TQGVPRIKEIIN +K ISTP+IT  L   D  +AAR
Sbjct: 1076 SIGEPGTQMTLKTFHFAGVGNLALTQGVPRIKEIINASKEISTPVITCHLAVPDKVHAAR 1135

Query: 975  VVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKI 1034
            + KGRIEKT L  +   I+   + +   I + L+ +TI++  L ++   +KE+I+   + 
Sbjct: 1136 IAKGRIEKTFLRDIIHYIRESWSDKEGYITVKLNWDTIENLQLELSLPQIKEAIINHRRF 1195

Query: 1035 KLKQQHIKVLDFR---KLEIFPP----VDKSKI-------HFELYSLKNVLPMVIVKGIK 1080
            K K   I VL      ++++ P     + K+ I       +  L  LK +LP + V G  
Sbjct: 1196 KGKDLSIDVLRSHIKIRVDMDPSSKAGLSKTDIAATSADPYLRLKHLKRMLPDIQVLGHP 1255

Query: 1081 TVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQT 1140
               R +I            + E+   +LLVEG GL+  M  +GI+G +TK+N++ E++  
Sbjct: 1256 QARRAII------------HSERGLNKLLVEGYGLRECMNTDGIEGVRTKTNNVMEMRAV 1303

Query: 1141 LGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLM 1200
            LGIEAAR  II+E++E MK   M ID RHM LLAD+MT  GEVLGITRFG+ KM  SVL 
Sbjct: 1304 LGIEAARGTIINEMSEVMK--DMDIDPRHMHLLADIMTTTGEVLGITRFGMAKMRDSVLQ 1361

Query: 1201 LASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            LASFEKTADHLF+A   GR DR+EGVSECIIMG  + LGTG +++
Sbjct: 1362 LASFEKTADHLFDAGGTGRTDRVEGVSECIIMGKTVSLGTGAMEV 1406


>gi|167385199|ref|XP_001737245.1| DNA-directed RNA polymerase III subunit RPC1 [Entamoeba dispar
            SAW760]
 gi|165900031|gb|EDR26493.1| DNA-directed RNA polymerase III subunit RPC1, putative [Entamoeba
            dispar SAW760]
          Length = 1379

 Score = 1104 bits (2855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/1270 (46%), Positives = 816/1270 (64%), Gaps = 58/1270 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----- 55
            MRN K + + +T L+++++ +C    +    CP C  ING +KK    L ++HD+     
Sbjct: 147  MRNKKTDTVARTYLVRALITQCRKHYNS---CPHCNAINGSIKK-YGNLRLVHDKYHRDA 202

Query: 56   --SKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SE 110
              +++ E    F  +I   K+  A V+ A   L+P  VL +F+ +   D E +     + 
Sbjct: 203  TITEMNEFYDGFEESIKLDKDINAFVDNAQEDLDPRKVLSIFRSLIREDIETMDFDPDNA 262

Query: 111  RPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             PE +I+T++ VPPIAIRPSV MDG + SNE+D+T +LK I++ N  +++ +    S ++
Sbjct: 263  PPENMILTSVPVPPIAIRPSVAMDGGNASNEDDLTTQLKEIMECNDRIKEMIKRGASPYQ 322

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
                W+ L + V+ +INSD+ G        +PL    QRLKGK GRFRGNL GKRV+++G
Sbjct: 323  YYDSWDQLTIAVSMFINSDLPGCD---DKGKPLRSICQRLKGKHGRFRGNLLGKRVDFSG 379

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYP 288
            RTVISPDPNL I ++ +P  MA  LTYPERV+ HNI+KLRQ + NG + YPG   +I   
Sbjct: 380  RTVISPDPNLDIEQIGVPKLMAIKLTYPERVTKHNIDKLRQLVINGSNIYPGCNSIIGGT 439

Query: 289  DGTARVLYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW 346
            DG  R +  K   R + A +LK G IV+RHLED D+VLFNRQPSLHR+SIMCH+A+I+PW
Sbjct: 440  DGLRRSMCIKLEMREKFAKDLKIGDIVERHLEDNDIVLFNRQPSLHRISIMCHKAKILPW 499

Query: 347  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQ 406
            RTLRFNE VC PYNADFDGDEMN+HVPQTEEAR E L+LM    NL TP+ G++++A TQ
Sbjct: 500  RTLRFNECVCTPYNADFDGDEMNLHVPQTEEARAECLMLMHSAKNLQTPRTGQMIIAETQ 559

Query: 407  DFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIR 466
            DFLT+S+L+T KD   +        C+  +    +DLPTPA LKP +LWTGKQL+ + ++
Sbjct: 560  DFLTTSYLLTSKDFVIEEEDMMQWACWFHNAGTEIDLPTPAYLKPKKLWTGKQLYGLALK 619

Query: 467  PHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATL 526
            P+ +  V ++L V  K YS      EG      + MC  DG++ F+NS+L+ GQ+ K+ +
Sbjct: 620  PNKHEGVNISLDVPSKLYSK-----EG------KWMCVKDGWICFKNSQLLCGQIEKSII 668

Query: 527  GNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGK 586
            G+GNK GL+ ++LRDYG   ++  M  +++  AR++G++GFSIGI DV P  +L+  K +
Sbjct: 669  GSGNKTGLFHLILRDYGTLESAKIMAHISRFCARFLGDYGFSIGISDVTPSADLTQMKEE 728

Query: 587  LISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRN 646
            L+SE Y+ C+  I++Y  GK +++ G    QTLEA++ + L+ IRE AGK C+  L   N
Sbjct: 729  LVSEGYKKCDQFIEDYKSGKQEVQAGSTPEQTLEALLNNELSEIRERAGKRCIEELKSDN 788

Query: 647  SPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVA 706
            SPL+M+  GSKGS INISQM+ACVGQQ+V G R  +GFI RSLPHF   ++ P AKGFV 
Sbjct: 789  SPLVMALSGSKGSVINISQMIACVGQQTVNGGRVSDGFISRSLPHFALHSRTPQAKGFVK 848

Query: 707  NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGG 766
            NSF++GL+ATEFFFHTMGGREGLVD+AVKTA+TGYM RRL+KALEDL + YD +VR+A  
Sbjct: 849  NSFFTGLNATEFFFHTMGGREGLVDSAVKTAETGYMQRRLMKALEDLHVHYDGTVRSASL 908

Query: 767  CIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLA 826
             +++F YGDDG+DP  +E     P+N + +L  ++    P  + Y++P+   +  E    
Sbjct: 909  TVIEFKYGDDGLDPLKVESDK-YPINLESVLSNLQQNQKPDDE-YITPENFDK--EYNAI 964

Query: 827  AYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQL 886
                +  SE +   L  F +      +KK + +E     D+    E   H   GIT + L
Sbjct: 965  ISQTKIVSELWKQQLETFLK------EKKEEMIEIYNRYDQ----ENAQHGLCGITIQTL 1014

Query: 887  EVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIK 946
            + FI  C  +      EAGT +GA+  QS+GEP TQM LKTFHFAGVASMNI  GVPRIK
Sbjct: 1015 KEFISICQKKGLRSVCEAGTPVGALAGQSMGEPSTQMVLKTFHFAGVASMNIALGVPRIK 1074

Query: 947  EIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIA 1006
            EIIN +K+I TPI+TA+L  + +  +AR+VKGRIE T L ++AKSIKIV     A I + 
Sbjct: 1075 EIINASKKIQTPIVTAKLVNSQDLTSARIVKGRIEATRLKEIAKSIKIVFKPAEAYISVK 1134

Query: 1007 LDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYS 1066
            LD ETI+   L    + V++ ++    +KLK   + + + +KL ++     + + F L S
Sbjct: 1135 LDFETIKQLELECTIEKVQDVLLNYRGLKLKDNQVIIRNKQKLRVYVDKASTSLLFALNS 1194

Query: 1067 LKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDG 1126
            L+N L  VIV GI+   R VI            N  K  + LLVEG+ L  VMG  G+ G
Sbjct: 1195 LRNQLLEVIVCGIENTGRAVI------------NKNKGLFELLVEGSELLKVMGTPGVIG 1242

Query: 1127 CKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGI 1186
             +T SNHI  V++ LGIEAAR  II EI   M A+G+SID RH++LL+DLMTF+G +LGI
Sbjct: 1243 EETTSNHIAVVEKVLGIEAARSTIISEIKNVMDAYGLSIDVRHLLLLSDLMTFKGVILGI 1302

Query: 1187 TRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIR 1246
            TR+GI KM  SV   ASFE+T DHLF+A+V+ R D I+GVSE II+G  + LGTG+++I 
Sbjct: 1303 TRYGISKMKDSVFTFASFERTNDHLFDAAVHSRKDEIKGVSESIIVGNQVGLGTGLMQIL 1362

Query: 1247 QRDAVPPMLK 1256
                 P  LK
Sbjct: 1363 YDPPKPIFLK 1372


>gi|324500904|gb|ADY40409.1| DNA-directed RNA polymerase III subunit RPC1 [Ascaris suum]
          Length = 1405

 Score = 1103 bits (2853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/1286 (47%), Positives = 815/1286 (63%), Gaps = 61/1286 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVK-CPRCGYINGMVKKAV-AVLGIIHDRSKV 58
            + NP ++ LR+  L K IV      ASK +  CP CG+ NG+VKKAV AVL I H     
Sbjct: 130  VNNPNLDYLRRKALHKRIVA-----ASKKITICPHCGHKNGVVKKAVGAVLKIAHMDPIP 184

Query: 59   TESLQEFASAITHTKE-SKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL-----SERP 112
             + + +F  A    KE S     V   +LNP+ V  +F ++   D  +L +        P
Sbjct: 185  ADKISKFVCAAQENKELSTLLPKVKFSLLNPLEVQKIFSKVRLEDVPLLMIRPFGSHNHP 244

Query: 113  EKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSL 171
              ++ T + VPP  IRPSV+ +  S + E+DIT +L  I+  N  +++   +   A    
Sbjct: 245  VDVLFTRLPVPPCCIRPSVVSEVKSGTTEDDITMKLSEIMLINDIIRKHKKDGAPAKTIS 304

Query: 172  AGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRT 231
              WE LQV+ A YINS++ G+P  MQ  +P+ GF QRLKGKQGRFRGNLSGKRV+++GRT
Sbjct: 305  ETWEHLQVQCALYINSELSGLPPDMQPKKPIRGFTQRLKGKQGRFRGNLSGKRVDFSGRT 364

Query: 232  VISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA-RMIRYPDG 290
            VISPDPNL+I +V +PI +A+ILT+PE V++ N+E++R+ + NG D +PGA  ++    G
Sbjct: 365  VISPDPNLRIDQVGVPIHVAKILTFPEIVNESNMERMRKLVINGDDIHPGANHIVERLTG 424

Query: 291  TARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 350
              R L    R Q A +LK G IV+RHL+D DVVLFNRQPSLH++SIM HRA+I+P RT R
Sbjct: 425  NKRFLRYGNREQTAAQLKVGDIVERHLDDNDVVLFNRQPSLHKISIMSHRAKIVPGRTFR 484

Query: 351  FNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLT 410
            FNE  C PYNADFDGDEMN+HVPQT EAR EA LLMGV++NL TP++GE L+A+ QDF+T
Sbjct: 485  FNECACTPYNADFDGDEMNLHVPQTYEARAEASLLMGVKSNLITPRSGEPLIAAIQDFIT 544

Query: 411  SSFLITRKDTFYDRAAFSLMCCYMGDG----MDRVDLPTPAILKPVELWTGKQLFSVLIR 466
              +L+T KD+F+ R+        + D       R+ +P PAI KPVELWTGKQL  ++IR
Sbjct: 545  GGYLMTHKDSFFPRSEVHRFASAIIDANAKKQSRIRIPPPAIRKPVELWTGKQLVELIIR 604

Query: 467  PHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATL 526
            P  + +V +NLT K K+Y+       G+EE      C  D +V  RNS LI G L KA L
Sbjct: 605  PDVDSKVSLNLTTKNKSYT-------GNEE-----FCVKDSYVIIRNSVLICGVLDKALL 652

Query: 527  GNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGK 586
            G+G+K  ++ +LLRD+G  A    M RLA+++  ++ N GFSIGI DV+P + L  +K  
Sbjct: 653  GSGSKTNIFYILLRDFGEDAAVDAMWRLARMAPVYLTNRGFSIGIGDVRPGEGLLKEKAA 712

Query: 587  LISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRN 646
            L++  Y+ C+  I    EG L+ +PGC   +TLEA+I   L+ IR+ AG+AC+ +L   N
Sbjct: 713  LLAAGYKKCDEYITSLKEGHLKAQPGCTEHETLEALILKELSAIRDHAGQACLRNLSRHN 772

Query: 647  SPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVA 706
            +PL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF DRSLPHF R+ K PAAKGFV 
Sbjct: 773  APLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEDRSLPHFERRQKTPAAKGFVE 832

Query: 707  NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGG 766
            NSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K LEDL + YD +VR++ G
Sbjct: 833  NSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKCLEDLCVNYDGTVRSSVG 892

Query: 767  CIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCP----------PAGQRYLSPQQ 816
             I++F +G+DG+DPA ME K G+ ++F  +L  V+ T P              R L    
Sbjct: 893  DIIEFTFGEDGLDPALMEAKDGKVVDFKHVLEHVRNTTPHIWEEGSELETEEMRLLITTT 952

Query: 817  VSEIVEKQLAAYGKESCSEAFLN---SLRKFF----EGQQDKLDKKIKFVEDIGWDDKSQ 869
            +   + K+   + +E   E  LN   S  K++      QQ +   +    +      +S+
Sbjct: 953  IKSKLGKEHTRF-REQLEEFMLNYIASTHKYYTLPKTCQQHEFSSRAVCAKCDTCISRSR 1011

Query: 870  ILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFH 929
               ++  ++  ++  Q   FI+ C  + +    E GTA+GAI A SIGEP TQMTLKTFH
Sbjct: 1012 -FRQIQIRSHCLSHSQAVAFIELCNDKLKRAVTEPGTAVGAIAATSIGEPSTQMTLKTFH 1070

Query: 930  FAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVA 989
            FAGVASMNITQGVPRIKEIING K ISTPIITA L    +E+ AR VK RIEKT LG++ 
Sbjct: 1071 FAGVASMNITQGVPRIKEIINGVKLISTPIITAALSNEKDESLARRVKARIEKTTLGEIC 1130

Query: 990  KSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTP-KIKLKQQHIKVLDFRK 1048
            + I+ V       +++ ++ + ++   L I    + +SI  T   + +K   I++L    
Sbjct: 1131 EYIEEVYLPDDCFVLVKINAKRVRLLQLEITMGSIAQSICSTKLPVPVKLNQIRILGKTI 1190

Query: 1049 LEIFPP-VDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYR 1107
            L I PP + K      +  LK  L  V+VKG+  V R VI   EK         +   Y+
Sbjct: 1191 LVIRPPDLAKCSKMMAIQYLKYNLTNVVVKGLPGVVRCVITADEK---------KGDSYK 1241

Query: 1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
            LLVEGT  Q+VM   GIDG +T  N+   V + LGIEAAR  II EI  TM++HG+ +D+
Sbjct: 1242 LLVEGTDYQSVMATMGIDGRRTYFNNALTVAEVLGIEAARTSIISEILSTMESHGIGLDQ 1301

Query: 1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
            RH+MLLAD+MT+RGEVLGITR G+ KM +SVL+LASFEKT DHL+ A+   ++D+I GVS
Sbjct: 1302 RHVMLLADVMTYRGEVLGITRNGLVKMKESVLLLASFEKTTDHLYEAAFFSQEDKIAGVS 1361

Query: 1228 ECIIMGIPMPLGTGILKIRQRDAVPP 1253
            ECIIMG PM +GTG+ K+      PP
Sbjct: 1362 ECIIMGTPMTIGTGLFKVLYNHGKPP 1387


>gi|449296109|gb|EMC92129.1| hypothetical protein BAUCODRAFT_78328 [Baudoinia compniacensis UAMH
            10762]
          Length = 1477

 Score = 1102 bits (2850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/1314 (46%), Positives = 819/1314 (62%), Gaps = 92/1314 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVK-CPRCGYINGMVKK-AVAVLGIIHDR-SK 57
            +R P +++LRK  L K I   C     K +K CPRC  +NG V++ A   + I+H R +K
Sbjct: 144  LRRPGLDSLRKAALCKKISADC-----KKIKVCPRCAGLNGPVRRQAHHPVKIMHHRFAK 198

Query: 58   VTES----------LQEFASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDC 103
             T S          + EF  + T  K++ A +      A   L P+ VL +FK+M D D 
Sbjct: 199  YTSSNAKSKQKPQAMVEFEESFTEAKKASADIERNMRRALDDLTPLRVLHIFKKMPDMDV 258

Query: 104  EVLYLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQ 159
            E+L L      RPE ++ T++  PP+AIRPSV  D + S E+DIT +L  I+Q N  L+ 
Sbjct: 259  ELLGLDPSRGGRPEYMVWTHVPAPPVAIRPSVAQDAA-STEDDITNKLGDIVQINNLLKA 317

Query: 160  ELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGN 219
             L       K +  WE LQV+VA YI+ +  G+    Q  R + GF QRLKGKQGRFRGN
Sbjct: 318  ALTLGQPITKVMEMWEFLQVQVAMYIDGNCPGLGRDSQWGRMMRGFCQRLKGKQGRFRGN 377

Query: 220  LSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKY 279
            LSGKRV+++GRTVISPDPNL I EVA+P+R+A  +TYPERV+ +NIEKLR+ I  G  K+
Sbjct: 378  LSGKRVDFSGRTVISPDPNLGIDEVAVPVRVAMHMTYPERVTSYNIEKLRKRILRGTQKH 437

Query: 280  PGA-RMIRYPDGTARVLY-----GKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHR 333
            PGA  +++  DG   +L      GK + Q+   L+ G +V+RHLEDGD+VLFNRQPSLH+
Sbjct: 438  PGANHVVKARDGRKIMLRIMEQNGKLQ-QVVDRLEIGDVVERHLEDGDIVLFNRQPSLHK 496

Query: 334  MSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLC 393
            +SI+ H+ ++ PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEA+ LMGV++NL 
Sbjct: 497  LSILSHKVKVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAIELMGVKHNLA 556

Query: 394  TPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD----------RVDL 443
            TPKNG  ++A+ QDF+T S+LI++KD F+ R  F  +  +M DGM            V +
Sbjct: 557  TPKNGTPIIAAIQDFITGSYLISQKDRFFTRRQFCQIVTFMFDGMHVDDPLTGEQRDVQI 616

Query: 444  PTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMC 503
            P PAI KP  LWTGKQ+++VL++PH +  V VNL  K K YS  L  T  D       + 
Sbjct: 617  PPPAIFKPQSLWTGKQVWNVLMKPHPSYPVNVNLDAKGKQYSAPLGNTAPD-------LL 669

Query: 504  PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIG 563
            PND ++  RNSE++ G + KA +G+G KD ++ V++RD+G       MNRLAKLSARW+ 
Sbjct: 670  PNDSYLVVRNSEVMCGTMDKAVIGDGKKDSIFYVIMRDFGPEYAVAAMNRLAKLSARWLT 729

Query: 564  NHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
              GFSIGI DV P  +L ++K  L+   Y  C   IK YNEGKLQ  PGCD  QT+E  I
Sbjct: 730  EQGFSIGISDVYPSGKLREEKENLVKAAYAKCVHLIKLYNEGKLQRDPGCDEEQTMENQI 789

Query: 624  TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
            + IL+ +R+  G  C   L   N+PL M++CGSKGS IN+SQMVA VGQQ +GG+R  +G
Sbjct: 790  SGILSEVRQQCGNVCFSELSRFNAPLTMAKCGSKGSNINVSQMVAAVGQQIIGGKRVLDG 849

Query: 684  FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
            F DR+LPHF + +++P AKGFV NSF+SGL+ TEF FH M GREGLVDTAVKTA+TGYMS
Sbjct: 850  FQDRTLPHFSKNSRDPPAKGFVVNSFFSGLNPTEFIFHAMSGREGLVDTAVKTAETGYMS 909

Query: 744  RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKAT 803
            RRL+K+LEDLS +YD++VRN+   +VQ  +GDDG+DP +MEG S +P++F+R  M    +
Sbjct: 910  RRLMKSLEDLSARYDHTVRNSSEGVVQMRFGDDGLDPLDMEG-SAKPVHFERTWMHAVTS 968

Query: 804  CPPAGQRYLSPQQVSEIVEKQL----------AAYGKE-----SCSEAF--LNSLRKFFE 846
                 +R L  ++ S+IV + L          A  G+E     +  E    L S+R F E
Sbjct: 969  TWDNSERGLMSEEASDIVAEMLDVERRKLVRFADDGRELPFGDTSDEGVDQLESVRGFLE 1028

Query: 847  GQQDKLDKKIKFV-----EDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKR 901
              +  +  K+  V     +  G  + +  L  +   +  ITE  L +F+  C  ++   +
Sbjct: 1029 TVRVFVGTKVNAVISSQAKYTGSVNGNSDLRRLP-TSFKITETALRLFLTLCLRKFEKSK 1087

Query: 902  VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIIT 961
            VE G A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN ++ ISTP+IT
Sbjct: 1088 VEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASRVISTPVIT 1147

Query: 962  AELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINA 1021
              L+    E A R  K  I+KT L  +   ++ V       + + +D  T++   L I  
Sbjct: 1148 CALDSRYEELAGRFAKAIIQKTYLKDIVAYVEDVWFVGGCYLNMRIDWRTVEGLGLRIGM 1207

Query: 1022 DIVKESIVQTPKIKLKQQHIKVLDFRKLEIF---PPVDKSK-------IHFELYSLKNVL 1071
              VK+++ +    K      +V+    L +F   P   ++K       +   +  LK  L
Sbjct: 1208 AEVKDAVERHKGFKTLNVEARVVGGCHLRVFCDTPSASQTKNAAVTDELFMTIQQLKRRL 1267

Query: 1072 PMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKS 1131
            P V+++G     R ++ + +K  R  +E        + VEG GL+  M   GIDG  T +
Sbjct: 1268 PNVVIRGYPDAHRAILKKDDKPDRTGRE-----PISVFVEGYGLKLCMTTPGIDGLHTTT 1322

Query: 1132 NHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGI 1191
            N I EV   LGIEAAR  II EI+  M   GM ID RHM LLAD+MT+RGEVLGITRFG+
Sbjct: 1323 NSIMEVASVLGIEAARRTIISEISSVMG--GMDIDPRHMQLLADVMTYRGEVLGITRFGL 1380

Query: 1192 QKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             KM  SVL LASFEKT DHLF+A+V G+ D ++GVSECIIMG P+ +GTG + I
Sbjct: 1381 SKMRDSVLQLASFEKTPDHLFDAAVGGKRDEVKGVSECIIMGQPVRIGTGSVGI 1434


>gi|389626659|ref|XP_003710983.1| DNA-directed RNA polymerase III subunit RPC1 [Magnaporthe oryzae
            70-15]
 gi|351650512|gb|EHA58371.1| DNA-directed RNA polymerase III subunit RPC1 [Magnaporthe oryzae
            70-15]
 gi|440463479|gb|ELQ33059.1| DNA-directed RNA polymerase III subunit RPC1 [Magnaporthe oryzae Y34]
 gi|440481206|gb|ELQ61814.1| DNA-directed RNA polymerase III subunit RPC1 [Magnaporthe oryzae
            P131]
          Length = 1456

 Score = 1101 bits (2847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/1323 (45%), Positives = 823/1323 (62%), Gaps = 110/1323 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD------ 54
            +R P ++ LR+T + K I ++C     K   CP C  +NG ++K + VL + HD      
Sbjct: 137  LRRPGIDNLRRTGICKKINEQCR----KVKICPYCDSVNGTIRK-IGVLKLAHDKFVTFN 191

Query: 55   -----RSKVTESLQEFASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCEV 105
                 R +   S   F ++  + K+S   ++     A   LNP+ VL LFK ++ TDCE+
Sbjct: 192  KSNALRKQPPVSKIVFDNSFNYAKKSVPELDKHLRKAMEDLNPLKVLTLFKMISPTDCEL 251

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L     RPE  +   +  PPI IRPSV  D S SNE+DIT +L  I+     ++  L 
Sbjct: 252  LGLDPSEGRPEMFLWQYLPAPPICIRPSVQQDTS-SNEDDITTKLAEIVHIAGLIRGALS 310

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGV--PFSMQVARPLSGFVQRLKGKQGRFRGNL 220
            + +     +  WE LQ+++A Y+NS+V G+  P   ++ R   GF QRLKGKQGRFRGNL
Sbjct: 311  KGHPIQTIMEQWEFLQLQIAIYVNSEVPGLGQPGFGKMTR---GFCQRLKGKQGRFRGNL 367

Query: 221  SGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYP 280
            SGKRV+++GRTVI PDPNL I +VAIPI +A+ LTYPERV+  NIEKLR+C++NGP  +P
Sbjct: 368  SGKRVDFSGRTVIGPDPNLAIDQVAIPILVAKNLTYPERVNHINIEKLRECVRNGPTVWP 427

Query: 281  GARMIRYPDGTARV-LYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIM 337
            GA  +   DG     +  KF  RN +A  L+ G +V+RH+EDGD+VLFNRQPSLH++SIM
Sbjct: 428  GANAVVKQDGDGEYKMNLKFGDRNDVAYRLRYGDVVERHIEDGDIVLFNRQPSLHKLSIM 487

Query: 338  CHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKN 397
             H  ++ PWRT R NE  C PYNADFDGDEMN+HVPQTEEARTEA+ LMGV+ NL TPKN
Sbjct: 488  SHFVKVRPWRTFRLNECACTPYNADFDGDEMNLHVPQTEEARTEAMTLMGVKYNLATPKN 547

Query: 398  GEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM-GDGMDRVDLPTPAILKPVELWT 456
            GE ++A+TQDF+T+++LI+ KD FYDR  F+ +C +M  DG D +DLP PAILKP  LWT
Sbjct: 548  GEPIIAATQDFITAAYLISLKDVFYDRKTFTYVCQHMLMDGKDYLDLPPPAILKPRALWT 607

Query: 457  GKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSEL 516
            GKQ+FS+++RP+    V +NL  K + Y  +     G+       MCPNDG++  RNSE+
Sbjct: 608  GKQVFSMMLRPNKESPVKINLDAKCREYKPR----PGE----CPDMCPNDGWLVIRNSEV 659

Query: 517  ISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQP 576
            + G++ K+ +G G KD ++ V+LRD+G       M+RLAKL AR +GN GFSIG+ DV P
Sbjct: 660  MCGKMDKSIVGGGKKDSIFYVILRDFGPDHAVIVMSRLAKLCARTLGNRGFSIGVGDVFP 719

Query: 577  KKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGK 636
              EL  +K  L++     C+  I+ +  GKLQ   GCD  QTLE  I+ +L+++R+ AG 
Sbjct: 720  TMELRAEKEVLVANANRQCDELIETFKAGKLQKAAGCDLEQTLENSISGLLSKVRQLAGA 779

Query: 637  ACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKA 696
             C+ +L   N+PL+M++ GSKGS IN++QMVA VGQQ +GG+R P+GF DRSLPHF + +
Sbjct: 780  KCVETLSRNNAPLVMAKSGSKGSEINVAQMVALVGQQIIGGQRVPDGFQDRSLPHFHKNS 839

Query: 697  KEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
            ++P +KGFVANSFYSGL  TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS Q
Sbjct: 840  RQPPSKGFVANSFYSGLLPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQ 899

Query: 757  YDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQ 816
            YD++VR +GG IVQF +G D +DP +MEG S  P++FDR     +       +  L P +
Sbjct: 900  YDDTVRTSGGGIVQFQFGADKLDPVDMEG-SAVPVHFDRTWTHAETLSWDNDENSLLPWE 958

Query: 817  V----SEIVEKQLAAY----------------------GKESCSEAFLNSLRKFFEGQQD 850
            V     +++E Q   Y                       +   +  F  ++  + EG+ +
Sbjct: 959  VLQVCDQVIETQRQRYVRRDLVDRSKILDYEDQRDLSIDEHESARGFWKTVYSYVEGRAN 1018

Query: 851  KLDKKIKF-------VEDIGWDDKSQILEEVT--HKTSGITEKQLEVFIQTCFSRYRVKR 901
            +L+K  K        V+D   DD    ++ V   ++ + I+   L  F++ C  ++   +
Sbjct: 1019 RLEKIRKRIGLSPGGVDDRTADDSKADMQRVAQVNRVAKISHTTLIKFLKLCQEKHERAK 1078

Query: 902  VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIIT 961
             E G A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT
Sbjct: 1079 TEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKLISTPVIT 1138

Query: 962  AELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINA 1021
              L+ N    AARVVKGRIEKT +  V + I+    +   S+V+ +DM  +QD HL I  
Sbjct: 1139 CPLQNNKQIEAARVVKGRIEKTYVSDVLRFIEDEWKADTGSVVLQIDMGALQDMHLGIGL 1198

Query: 1022 DIVKESIVQTPKIKLKQQHIKVLDFRKLEIF-------------------PPVDKSKIHF 1062
              + E+I +  K+K++   ++ L    +EI                       D   +  
Sbjct: 1199 PEIAEAICKYKKLKIEPDDLR-LSSDSVEIVVRNTWADTAAAKKAARSRTTTEDSPDLLL 1257

Query: 1063 ELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAE 1122
             +  L+ VLP V + G     R +I           +  EK ++++LVEG GL+  M  E
Sbjct: 1258 RVNHLRRVLPQVPISGYPEAARAII-----------QTSEKNEHKVLVEGYGLRECMTTE 1306

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
            G+ G    SN++ E +  LGIEAAR  I  EI   M    M ID RHM LLAD+MT++G+
Sbjct: 1307 GVIGTSVISNNVMEARDILGIEAARSTIATEIGSVMG--DMGIDPRHMQLLADVMTYKGD 1364

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            VLGITRFG+ KM  SVL LASFEKT DHLF A+   + D+IEGVSECIIMG  M +GTG 
Sbjct: 1365 VLGITRFGLSKMRDSVLQLASFEKTPDHLFAAAAGMKTDKIEGVSECIIMGQTMSVGTGA 1424

Query: 1243 LKI 1245
             KI
Sbjct: 1425 SKI 1427


>gi|440634119|gb|ELR04038.1| hypothetical protein GMDG_06549 [Geomyces destructans 20631-21]
          Length = 1478

 Score = 1100 bits (2846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/1322 (44%), Positives = 822/1322 (62%), Gaps = 110/1322 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD------ 54
            +R P ++ L++T + K I  +C     KA  CP C  +NG ++K   V  + HD      
Sbjct: 144  LRRPNIDNLKRTQICKKINAQCR----KAKTCPYCSAVNGQIRK-TGVFKLTHDKFLAYN 198

Query: 55   -----RSKVTESLQEFASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCEV 105
                 R  +      F  +    K++ A ++     A   LNP+ VL LF+ +T TDCE+
Sbjct: 199  KSTAARKVIPPEKAAFDKSFVEAKKTNAELDKHLKKAMDDLNPLRVLNLFRMITPTDCEL 258

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L ++    RPE  +   +  PPI IRPSV  DG+ S E+D+T +L  I+  ++ ++  L 
Sbjct: 259  LGINPSEGRPEMFLWQYVPAPPICIRPSVAQDGA-STEDDLTSKLGDIVHISSLIRSALQ 317

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            +       +  WE LQ+++A Y+NSDV G+       + + GF QRLKGKQGRFRGNLSG
Sbjct: 318  KGQPIQTIMEQWEYLQLQIAMYVNSDVPGLQ-QPGFGKAIRGFCQRLKGKQGRFRGNLSG 376

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I EVAIPI +A  +TYPERV D NI KLR+CI+ GP K+PGA
Sbjct: 377  KRVDFSGRTVISPDPNLSIEEVAIPILVATNMTYPERVHDRNIHKLRECIKRGPGKWPGA 436

Query: 283  RMI-RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRA 341
             ++ +  DG    L    R   A  L+ G +V+RHLEDGD++LFNRQPSLH++SIM H  
Sbjct: 437  NIVEKKMDGRKVSLKHADREYTANTLRVGDVVERHLEDGDIILFNRQPSLHKLSIMSHYV 496

Query: 342  RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEIL 401
            ++ PWRT RFNE VC PYNADFDGDEMN+HVPQTEEARTEA+ LMGV+NNLCTPK+GE +
Sbjct: 497  KVRPWRTFRFNECVCGPYNADFDGDEMNIHVPQTEEARTEAINLMGVKNNLCTPKSGEPI 556

Query: 402  VASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLF 461
            +++TQDF+T+++L++ K+ F+DR  F+ +C YM DG   +D+P PAI+KP  LWTGKQ+F
Sbjct: 557  ISATQDFITAAYLLSSKENFFDRKTFAHLCMYMVDGKMDIDIPPPAIIKPEALWTGKQVF 616

Query: 462  SVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQL 521
            SVL+RP+    V VNL  K + Y  K +  +  +      M PNDG++  RNSE++ G++
Sbjct: 617  SVLMRPNKTSPVKVNLDAKCRDY--KAVAGQAPD------MDPNDGWLVVRNSEVMCGRM 668

Query: 522  GKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELS 581
             K T+G+G KD ++  +LRD+G       MNRLAKLSAR++ N GFSIGI DV P K L 
Sbjct: 669  DKTTVGSGKKDCIFYTILRDFGPDHAVLAMNRLAKLSARYLTNRGFSIGISDVYPSKSLE 728

Query: 582  DKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGS 641
            D+K  L+++ Y  C+  I ++  GKL+   GC+  +TLE  I+ IL+R+R+ AG+ C+ +
Sbjct: 729  DQKLALVTKAYAECDDLIVQFKSGKLEKATGCNMEETLENKISGILSRVRQQAGEFCINT 788

Query: 642  LPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAA 701
            L   NSPLIM++ GSKGS IN++QMV  VGQQ + G R  +GF DR+LPHFP+ A++P +
Sbjct: 789  LSKWNSPLIMAKSGSKGSNINVAQMVTLVGQQMISGARVADGFQDRTLPHFPKNARQPPS 848

Query: 702  KGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSV 761
            KGFV NSF+ GL+ TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD++V
Sbjct: 849  KGFVRNSFFGGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTV 908

Query: 762  RNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATC----PPAGQRYLSPQQV 817
            RN+ G IVQF +G D +DP +MEG S  P++FDR     ++       PA   Y    Q 
Sbjct: 909  RNSSGGIVQFQFGADKLDPVDMEG-SAVPVHFDRTYTHAESLTWDNNDPALLPYEITAQC 967

Query: 818  SEIVEKQLAA-------------YGKES--------CSEAFLNSLRKFFEGQQDKLDKKI 856
            + ++E + A              Y  +S         +  F++ + K+      KL +  
Sbjct: 968  AALLEPEKAKLTRRGLLHNEKLEYNDQSDYAIDELESARGFVSEVSKYVGRLAQKLSQAR 1027

Query: 857  K-----------FVEDIGWD--DKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVE 903
            K            + DI ++   + Q       + + ++E  L  FI+ C ++Y    VE
Sbjct: 1028 KRAGLPELTENPSLSDIHYNPATEDQTRRNQMDRVAKVSEATLAKFIELCLTKYLKAHVE 1087

Query: 904  AGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAE 963
             G A+GA+GAQSIGEPGTQMTL+TFHFAGVA M+ITQGVPRIKEIIN +K ISTP++T  
Sbjct: 1088 PGHAVGAVGAQSIGEPGTQMTLRTFHFAGVAGMSITQGVPRIKEIINASKLISTPVMTCP 1147

Query: 964  LECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADI 1023
            LE   +  AARVVKGRIEKT +    + ++ + +++ A+I +++D++ + + HL I    
Sbjct: 1148 LENPHDIVAARVVKGRIEKTYISDCIRFVEDMWSAKSATICLSVDVQGVSEMHLDITTAD 1207

Query: 1024 VKESIVQTPKIKLKQQHIKVLDFRKLEIFPPV--------------------DKSKIHFE 1063
            +  +I++  K+K+       LD    +IF  V                    + S +   
Sbjct: 1208 IANAILRNKKLKIPND---ALDIIGDDIFVRVAHGSNTGTFGRGGAAKKSTDEASDLLLR 1264

Query: 1064 LYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEG 1123
            +  LK  +P + V G     R +I +            +K ++ + VEG GL+A M  EG
Sbjct: 1265 VNYLKRTIPTIPVSGYPEATRAIIQQ------------DKGEHTVHVEGYGLRACMTTEG 1312

Query: 1124 IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
            + G +  +N + E  Q LGIEAAR  I +EI   M    M+ID RHM LLAD+MT++GE+
Sbjct: 1313 VIGTRVTTNSVVECNQVLGIEAARTTIANEIESVMSE--MNIDPRHMQLLADVMTYKGEI 1370

Query: 1184 LGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGIL 1243
            LGITRFG+ KM  SVL LASFEKT DHLF+A+   + D IEGVSECIIMG  M +GTG  
Sbjct: 1371 LGITRFGLSKMRDSVLQLASFEKTPDHLFDAAAGMKKDAIEGVSECIIMGQTMSVGTGAF 1430

Query: 1244 KI 1245
            K+
Sbjct: 1431 KV 1432


>gi|428186682|gb|EKX55532.1| hypothetical protein GUITHDRAFT_156792 [Guillardia theta CCMP2712]
          Length = 1281

 Score = 1100 bits (2844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/1291 (46%), Positives = 795/1291 (61%), Gaps = 146/1291 (11%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA----VLGIIHDR- 55
            MR  + + LR+   +++I ++C  ++     CPRCG  NG +KK  A     L +IHD+ 
Sbjct: 96   MRRVQDDHLRRAAKLRAITEECKKISV----CPRCGACNGPIKKIPAGGSRYLMLIHDKF 151

Query: 56   SKVTESLQEFASAIT----------HTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
            +K  E   EF S +            +++ K A+  A   L+P+ VL +F+R+ D D E 
Sbjct: 152  AKHEEQKLEFHSMLAAEDKSFSLTKRSQDMKQAIGKAAQDLDPLTVLDMFQRIPDEDVE- 210

Query: 106  LYLSERPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEA 164
                 RPE+LIIT++ VPP  IRPSV M  G+ SNE+D+T  L  I++ + S+Q  + + 
Sbjct: 211  ---HSRPEELIITHLPVPPCCIRPSVAMGVGAGSNEDDLTVILSEIVKASESIQDTMDKG 267

Query: 165  NSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-----RPLSGFVQRLKGKQGRFRGN 219
             S    +  W  LQ+++A Y NS++ GV   + +      + + GF QRLKGKQGRFRGN
Sbjct: 268  GSIANIMDCWGFLQLKIAHYFNSELPGVQQQLTMKSSGKRKIMRGFAQRLKGKQGRFRGN 327

Query: 220  LSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKY 279
            LSGKRV+++GRTVISPDPNL + +VA+P+ MA+ILTYPERV+ HN+ +L++ I NGPD +
Sbjct: 328  LSGKRVDHSGRTVISPDPNLHVRQVAVPVHMAKILTYPERVTSHNLVRLKKAIDNGPDIW 387

Query: 280  PGARMIRYP-DGTARVLYGKFRNQLAV-ELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIM 337
            PGA  I    +   R     +  ++A  EL+ G IV+RHL D DVVLFNRQPSLHR+SIM
Sbjct: 388  PGATHILLQGNSNDRKDLRYYPKKIAKNELRIGDIVERHLIDDDVVLFNRQPSLHRISIM 447

Query: 338  CHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKN 397
             HRA+++ WRTLRFNE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV NNLCTPK+
Sbjct: 448  AHRAKVLKWRTLRFNECVCNPYNADFDGDEMNLHVPQTEEARAEAIELMGVVNNLCTPKD 507

Query: 398  GEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTG 457
            G I++A+TQDFLT S+LI+RK+TF+  A     C +  D  +  +L  PAI+KP+ LWTG
Sbjct: 508  GSIMIAATQDFLTGSYLISRKNTFFHEAQMWYYCSFTCDAKEDFELEPPAIIKPMRLWTG 567

Query: 458  KQLFSVLIRPHANMR-------VYVNLTVKEKTYSNKLIRTEGDEEI-RIETMCPNDGFV 509
            KQL S+L++P  N R       V VN  + E  Y  K      D +I +   MCP+D +V
Sbjct: 568  KQLLSMLLKPRKNTRSLETDVEVLVNTELGESQYEKK-----SDNDIDKGRYMCPHDNYV 622

Query: 510  YFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSI 569
             FRNSEL+ G LGK+TLG GNK+ L+  LLRD  A   +  M +LAKL +RW+G HGF+ 
Sbjct: 623  CFRNSELMCGNLGKSTLGAGNKNSLFYTLLRDCDAETAADRMTKLAKLCSRWMGLHGFTF 682

Query: 570  GIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNR 629
            GI+DV P + +   K + + +  + C+  I +Y  GKLQ  PGCD   +LE ++   L+ 
Sbjct: 683  GIEDVMPTEPIKKAKAEAMQKVKDKCDKLIADYRAGKLQRVPGCDLELSLEQMVGKELDD 742

Query: 630  IREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSL 689
            +R     A    L + N  L+M+ C SKGS  NISQM+ C+GQQ +GG R PNGFI R+L
Sbjct: 743  VRNLVASAAKKELHYDNKVLVMALCKSKGSNDNISQMIGCLGQQKLGGSRIPNGFIGRTL 802

Query: 690  PHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKA 749
            PHF   AKEPAAKGFV NSF++GL+ TEFF HTM GREGLVDTAVKTA+ GYM+RRL+K+
Sbjct: 803  PHFEMYAKEPAAKGFVENSFFTGLNPTEFFMHTMTGREGLVDTAVKTAECGYMARRLMKS 862

Query: 750  LEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQ 809
            LEDLSI YD++VRN+ GCIVQF YGDDG+DP  ME   G+P+N  R++ +  A       
Sbjct: 863  LEDLSIHYDSTVRNSHGCIVQFRYGDDGLDPMLMEDDDGKPINMKRMIQRSCAL------ 916

Query: 810  RYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQ 869
                           L  YG E  S A    +                            
Sbjct: 917  ---------------LGCYGDEERSPANFTLM---------------------------- 933

Query: 870  ILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFH 929
                        TE+QL+ F+     RYR    E G+A+GA+GAQSIGEPGTQMTLKTFH
Sbjct: 934  ------------TEEQLKHFLDEIICRYRRAVAEPGSAVGALGAQSIGEPGTQMTLKTFH 981

Query: 930  FAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVA 989
            FAG+ASMN+T GVPRIKEIIN +K ISTP++   L+ + +E  AR++KGRIE+T LGQVA
Sbjct: 982  FAGIASMNVTLGVPRIKEIINASKIISTPVVEVPLQLDRDEINARIIKGRIERTTLGQVA 1041

Query: 990  KSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKL 1049
            K IK V       +V+ LDM+ +QD  L ++A  VK++I+  PK+K+K+QHI      KL
Sbjct: 1042 KYIKQVFAPSRCYVVVKLDMQCVQDLQLNLSASTVKKAILSDPKLKVKEQHISSKGTDKL 1101

Query: 1050 EIFPPVD---KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKY 1106
             I PP D   K  +HF L +L + L  VIV GI T+ R VI   E     VK  G    Y
Sbjct: 1102 LIHPPHDGRSKESLHFMLINLASQLRNVIVCGIPTIRRAVIQSTE-----VKGGGNS--Y 1154

Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
            +LLVEGTGLQ VM   G+ G   K+NH+ E+Q                            
Sbjct: 1155 QLLVEGTGLQEVMATSGVKGASAKTNHVMEMQTVRERRRE-------------------- 1194

Query: 1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
                         RGEVLGITRFG+ KM +SV+MLASFEKT DHL++A+++GR D+I GV
Sbjct: 1195 -------KGRRERRGEVLGITRFGLAKMKESVMMLASFEKTVDHLYDAAIHGRSDQISGV 1247

Query: 1227 SECIIMGIPMPLGTGILKIRQ----RDAVPP 1253
            SECIIMG P+ +GTG  K+      +DAV P
Sbjct: 1248 SECIIMGTPVQIGTGSFKVLHQTDPQDAVRP 1278


>gi|407917443|gb|EKG10751.1| RNA polymerase alpha subunit [Macrophomina phaseolina MS6]
          Length = 1466

 Score = 1098 bits (2840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1343 (45%), Positives = 823/1343 (61%), Gaps = 136/1343 (10%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA-VLGIIH------ 53
            +R P +++L++T + K I  +C     K  KCP CG  NG V+K     L I+H      
Sbjct: 136  LRRPDLDSLQRTAICKKISGECR----KVKKCPHCGATNGPVRKVAGHPLKIVHLKFDAY 191

Query: 54   -----DRSKVTESLQEFASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCE 104
                  R ++     EF  +    K+  A ++     A   +NP+ VL LFKR+  TDC 
Sbjct: 192  NKSNAKRKEMPRGKPEFDKSFEIAKQGNAELDKHIRKAVDDMNPLRVLNLFKRIKTTDCP 251

Query: 105  VLYLSE-RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVE 163
            +L +S+ RPE  I   +  PP+ IRPSV  + + + E+DIT +L  I+Q ++ ++  L +
Sbjct: 252  LLGMSKGRPEMFIWQYVPAPPVTIRPSVAQEAA-TTEDDITNKLGDIVQISSLIRAGLAK 310

Query: 164  ANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGK 223
                   +  W+ LQ+++A Y+NSDV G+  +  V + + GF QRLKGKQGRFRGNLSGK
Sbjct: 311  GLPVQTIMEQWDFLQLQIALYVNSDVPGLQ-AQGVGKHIRGFCQRLKGKQGRFRGNLSGK 369

Query: 224  RVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR 283
            RV+++GRTVI PDPNL I EVA+P R+A+ +TYPE+VS +N+EKLR C++ G  K+PGA 
Sbjct: 370  RVDFSGRTVIGPDPNLSIEEVAVPERVAKNMTYPEKVSRYNLEKLRGCVRRGKFKHPGAN 429

Query: 284  MIRYPDGTARVL-----YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMC 338
             I   DG   VL      GK   Q A +L+ G +V+RH+EDGD+VLFNRQPSLH++SI+ 
Sbjct: 430  FIVKQDGRRMVLEVLQKLGKLE-QTAEQLQIGDVVERHIEDGDIVLFNRQPSLHKLSILS 488

Query: 339  HRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNG 398
            H+A++ PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEA+ LMGV+NNL TPKNG
Sbjct: 489  HKAKVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAIELMGVKNNLATPKNG 548

Query: 399  EILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG----------MDRVDLPTPAI 448
              ++A+ QDF+T +FL TRKD F DR  F+LMC YM +G            ++DLP P I
Sbjct: 549  TPIIAAIQDFITCAFLTTRKDLFLDRKTFALMCSYMFNGDSVRDPETGKYHKIDLPPPVI 608

Query: 449  LKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTY-SNKLIRTEGDEEIRIETMCPNDG 507
            LKP  LWTGKQ+++VL+RP+   +V VNL    K Y  NK            + +  +D 
Sbjct: 609  LKPQALWTGKQVWNVLMRPYKASKVLVNLDAACKQYKGNK------------KDLNEDDA 656

Query: 508  FVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGF 567
            ++  RNSE++ G + K+T+G+G KD ++ V++RD+G       MNRLAKLSARW+ N GF
Sbjct: 657  WLVVRNSEVMCGVMDKSTVGDGKKDSVFYVMMRDFGPDYAVQAMNRLAKLSARWLTNRGF 716

Query: 568  SIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDIL 627
            SIG+ DV P  +L ++K KLI + Y      ++ YN GKL+   GCD   T+E  I+ +L
Sbjct: 717  SIGVSDVTPGSKLVERKTKLIQDAYIQAKKIVELYNTGKLERDAGCDEELTMENKISGVL 776

Query: 628  NRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDR 687
            N++R +AG  C   L   NSPLIM++CGSKGS IN++QMVACVGQQ +GG R  +GF DR
Sbjct: 777  NKVRAEAGDICFSELTNWNSPLIMAKCGSKGSNINVAQMVACVGQQIIGGARVQDGFQDR 836

Query: 688  SLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLI 747
            +LPHF +  + P AKGFVANSFYSGL+  EF FH M GREGLVDTAVKTA+TGYMSRRL+
Sbjct: 837  TLPHFAKGGRLPDAKGFVANSFYSGLTPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLM 896

Query: 748  KALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPA 807
            K+LEDLS QYD++VRN+   IVQF YGDD +DP +MEGK+ +P+NF R     + T    
Sbjct: 897  KSLEDLSAQYDDTVRNSASQIVQFRYGDDNLDPVDMEGKA-KPVNFVRSFDHARTTTWDN 955

Query: 808  GQRYLSPQQVSEIVEKQLAA-------YGKESCSEAFL----------NSLRKFFEGQQD 850
             +R L P ++ +I   +L A       Y +      F            S R F+   QD
Sbjct: 956  EERGLLPDEIRDIARARLDAKRREIQRYSETGQELQFTVNDPGMVDQKESKRNFYNEVQD 1015

Query: 851  KLDKK--------IKFVE--------------DIGWDDKSQILEEVTHKTSGITEKQLEV 888
             + KK         +FVE              D+G+   S I++ V    S I+ + LE 
Sbjct: 1016 FIFKKAGDVERLTTRFVEVQNENKQKGEAIADDVGF---SNIVDGV----SKISRRCLEY 1068

Query: 889  FIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEI 948
            F+  C +++    V+ G A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEI
Sbjct: 1069 FLDLCLTKHAQSHVQPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEI 1128

Query: 949  INGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALD 1008
            IN +K ISTPIIT ELE   +  AAR+VK R+EKT L  +   I+ V       + + +D
Sbjct: 1129 INASKTISTPIITCELENKKDIRAARLVKARVEKTYLKDITHYIEDVWYDDGNYLNMRID 1188

Query: 1009 METIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRK-LEIFPP------------- 1054
             ET++   L +  + ++ +I++ PK+K+     ++  F+  L I+ P             
Sbjct: 1189 WETVEALGLELTKNDLELAILKAPKLKIGADGGRIEFFKNHLRIYVPDVNDPSNEKQRKA 1248

Query: 1055 ------VDKSKIHFE------LYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGE 1102
                    K+K   E      +  LK  +P + +KG     R +I          KE+  
Sbjct: 1249 AATRSGASKAKNSTEDAYFARIQLLKRAIPEIAIKGYPEATRAIIK---------KEDNA 1299

Query: 1103 KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHG 1162
             +   L+VEG GL+ +M   GI G +  SN + E    LGIEAAR  II EI   M +  
Sbjct: 1300 DEDISLIVEGYGLKLIMATPGIRGTQCYSNSVLECFAVLGIEAARTTIIKEIASVMGS-- 1357

Query: 1163 MSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDR 1222
            M ID RHM LLAD+MT++G++LGITRFG+ KM  SVL LASFEKT DHLF A   G+ D 
Sbjct: 1358 MDIDPRHMQLLADVMTYKGDILGITRFGLAKMRDSVLQLASFEKTPDHLFEAGYRGKSDG 1417

Query: 1223 IEGVSECIIMGIPMPLGTGILKI 1245
            ++GVSECII+G  M +GTG  K+
Sbjct: 1418 VQGVSECIILGQSMGIGTGSFKV 1440


>gi|322702468|gb|EFY94113.1| DNA-directed RNA polymerase III largest subunit [Metarhizium
            anisopliae ARSEF 23]
          Length = 1364

 Score = 1097 bits (2838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/1305 (44%), Positives = 815/1305 (62%), Gaps = 90/1305 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----- 55
            +R P ++ LR++ + K I ++C  + S    CP C  ING V+K + VL + HD+     
Sbjct: 51   LRRPHLDNLRRSQICKRINEQCRKVKS----CPHCTSINGQVRK-IGVLKLTHDKFSSYN 105

Query: 56   -----SKV-----TESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
                  KV     T+  + FA+A     E    ++ A   LNP+ VL LF+R+   DCE+
Sbjct: 106  KSTSVKKVPPVAKTQFDESFATARNGNPELSKHLHKAVEDLNPLRVLGLFQRIGSVDCEL 165

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L+    RPE  I   +  PP+ IRPS+  D + SNE+D+T +L  I+  +  ++  L 
Sbjct: 166  LGLNPSDGRPEMFIWQYLPAPPVCIRPSIAQDNA-SNEDDLTTKLADIVWVSGMIRSALQ 224

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            + +     +  WE LQ +VA YINSDV G+       +P+ G  QRLKGKQGRFRGNLSG
Sbjct: 225  KGSPIQTIMEQWEYLQTQVAIYINSDVPGLQ-QPGFGKPIRGICQRLKGKQGRFRGNLSG 283

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I EVA+P  +A+ LTYPER    NIEKLR+CI+NGP+ +PGA
Sbjct: 284  KRVDFSGRTVISPDPNLGIDEVAVPQLVAKNLTYPERAQRQNIEKLRRCIRNGPNVWPGA 343

Query: 283  R-MIRYPDGTARVLYGKFRNQ--LAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            + +++  +G  ++   KF +   +A +L  G +V+RH+EDGD+VLFNRQPSLH++SIM H
Sbjct: 344  QCVLKMREGGYKISL-KFADTELIANKLCIGDVVERHIEDGDIVLFNRQPSLHKLSIMSH 402

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
              ++ PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEA+ LMGV++NL TPK+GE
Sbjct: 403  FVKVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAMSLMGVKHNLITPKSGE 462

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++A+TQDF+T+++L++ KD F+DR  F+ +C +M DG  ++DLP PAI+ P  LWTGKQ
Sbjct: 463  PIIAATQDFITAAYLLSYKDRFFDRKTFTTICIHMLDGGTQLDLPPPAIIVPKTLWTGKQ 522

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F+VL+RP+    V VNL  + K++  +          +   M PNDG++  RNS+++ G
Sbjct: 523  IFNVLMRPNNRSPVMVNLDARCKSFVTR--------PGQCPDMDPNDGWLVVRNSQVMCG 574

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
            Q+ K+T+G+G KD ++ V+LRDYG       MNRLAKL AR++ N GFSIG+ DV P   
Sbjct: 575  QMDKSTVGSGKKDSIFYVILRDYGPDEAVSAMNRLAKLCARYLTNRGFSIGVGDVYPTAS 634

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L  +   L+S  Y+ C+  I  +  G L+  PGCD  QTLE  I+ +L+++R+ AG+ C+
Sbjct: 635  LRKEIDHLVSTAYKKCDNIIATFQAGSLEKAPGCDMEQTLENSISGVLSKVRQQAGEHCI 694

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
             +L   N+PLIM++ GSKGS IN++QMV+ VGQQ +GG+R P+GF DRSLPHF + A++P
Sbjct: 695  NTLSRHNAPLIMAKSGSKGSDINVAQMVSLVGQQIIGGQRVPDGFQDRSLPHFHKNARQP 754

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             +KGFV NSFYSGL  TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS++YDN
Sbjct: 755  PSKGFVKNSFYSGLLPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSVKYDN 814

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VR +GG IVQF +G D +DPA+MEG +G P+ F R     ++      +  L P ++  
Sbjct: 815  TVRTSGGNIVQFQFGADNLDPADMEG-AGTPVQFHRTWTHAESLTRDDDEPSLMPHEIGI 873

Query: 820  IVEKQLAAY-------------------------GKESCSEAFLNSLRKFFEGQQDKLDK 854
            I +  L  Y                          +      FL S++ + +G   +L K
Sbjct: 874  ICDSMLEPYRSRYVRKGLLHNEELDYEDDSDYGIDEHESGRKFLKSIKSYIDGLASRLRK 933

Query: 855  KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQ 914
              +     G     +  ++   +T+ +    L +FI+ C  ++    VE G  +GA+GAQ
Sbjct: 934  VREIAGYQGNTPSRETAQDHVDRTAKVAATTLRLFIRLCLDKFTKAHVEPGHPVGAVGAQ 993

Query: 915  SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAAR 974
            SIGEPGTQMTLKTFHFAGVA M +TQGVPRI EIIN ++ ISTP+IT  L       AA+
Sbjct: 994  SIGEPGTQMTLKTFHFAGVAGMGMTQGVPRINEIINASRAISTPVITCPLLNKWQIEAAK 1053

Query: 975  VVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKI 1034
            VVK RIEKT +  +   I++    +   IV+ +D +T+ +    +    V ++I    K+
Sbjct: 1054 VVKARIEKTYVSDILCFIEVEWDCQSGHIVMQVDTDTLANMQAGVGVFNVAQAICDQRKL 1113

Query: 1035 KLKQQHIKV------LDFRKLEIFPPVDKSKIHFELYS--------LKNVLPMVIVKGIK 1080
            K++ + + V      +  R+ +  PP  K+K   E +         L+  LP V + G  
Sbjct: 1114 KVRPEDVTVDKDIIFVRIRETDDLPPRSKNKSAAEGFRDMMLRANFLRRTLPSVPISGYP 1173

Query: 1081 TVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQT 1140
               R +I           E  E+  YR+LVEG GL+A M  EG+ G + ++N + E  Q 
Sbjct: 1174 DATRALI-----------ETTEENTYRVLVEGYGLRACMATEGVVGTQVRTNSVMECGQV 1222

Query: 1141 LGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLM 1200
            LGIEAAR  I DEI E M    M ID RHM LLAD+MT++GEVLGITRFG+ K   SVL 
Sbjct: 1223 LGIEAARTTIADEIAEVMGY--MGIDPRHMQLLADVMTYKGEVLGITRFGLSKTRDSVLH 1280

Query: 1201 LASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            LASFEK ADHLF+A    + DRIE VSE II+G  M +GTG L +
Sbjct: 1281 LASFEKPADHLFDAVAGMKMDRIEEVSESIILGQAMSVGTGGLDV 1325


>gi|346972060|gb|EGY15512.1| DNA-directed RNA polymerase III subunit RPC1 [Verticillium dahliae
            VdLs.17]
          Length = 1456

 Score = 1097 bits (2837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/1322 (45%), Positives = 826/1322 (62%), Gaps = 101/1322 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----S 56
            +R P ++ LR+T + K I ++C     K   C  CG ING ++K V VL ++HD+    +
Sbjct: 135  LRRPFIDNLRRTQICKKINEQCR----KTKTCHYCGSINGQIRK-VGVLKLVHDKFVAYN 189

Query: 57   KVT-------ESLQEFASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCEV 105
            K T       ES   F ++    K+    ++     A   LNP+ VL LFK ++ TDCE+
Sbjct: 190  KSTSMKKVPPESKIAFDASFDEAKKQNPDLDKHLRKAMEDLNPLRVLNLFKTISPTDCEL 249

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L     RPE  I   +  PP+ IRPSV  D + S E+D+T +L  I+  +  ++  L 
Sbjct: 250  LGLDPVEGRPEMFIWQFLPAPPVCIRPSVAQDNA-STEDDLTTKLADIVWISGMIRLALQ 308

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            + +     +  WE LQ+++A Y+NSDV G+       + + GF QRLKGKQGRFRGNLSG
Sbjct: 309  KGSPVQTIMEQWEYLQLQIAMYVNSDVPGLQ-QPGFGKTVRGFCQRLKGKQGRFRGNLSG 367

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL IT+VAIPI +A+ LTYPERV+D++++KLR+C+QNGPD +PGA
Sbjct: 368  KRVDFSGRTVISPDPNLGITQVAIPILVAKNLTYPERVNDYSLKKLRKCVQNGPDVWPGA 427

Query: 283  RMIRYPDGTARVLYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
            + +   D     +  KF  R Q+A +LK G +V+RH+ED D+VLFNRQPSLH++SIM H 
Sbjct: 428  QQVIKSDEGGYKISLKFGNRRQVARDLKVGDVVERHIEDNDIVLFNRQPSLHKLSIMSHL 487

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
             ++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV++NL TPKNGE 
Sbjct: 488  VKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLATPKNGEP 547

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A+TQDF+T+++L++ KD F+DR  F+ +  +M DG+  +DLP PAILKP  LWTGKQ+
Sbjct: 548  IIAATQDFITAAYLLSGKDRFFDRKTFTYIVMHMMDGITHLDLPPPAILKPQALWTGKQV 607

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            FS+++RP+   +V +NL  K + Y  K          +   M P D ++  RNSE++ G+
Sbjct: 608  FSMMLRPNKECQVKINLDAKCREYKAK--------PGQCPDMDPEDAWLVIRNSEVMCGR 659

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + K+T+G G KD ++ V+LRD+G       MNRLAKL AR + N GFSIG+ DV P ++L
Sbjct: 660  MDKSTVGGGKKDSVFYVILRDFGPDEAVTAMNRLAKLCARQLTNRGFSIGVGDVFPTEQL 719

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
              KK KLI +     +  I  Y +GKL+   GC+  QTLE  I+ +L+++R  AG  C+ 
Sbjct: 720  LVKKKKLIEDANIQVDELINTYKKGKLEKATGCNMEQTLENSISGLLSKVRTQAGAQCIQ 779

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
            +L   N+PL+M++ GSKGS IN++QMVA VGQQ +GG R  +GF DRSLPHF + A +P 
Sbjct: 780  TLSRNNAPLVMAKSGSKGSEINVAQMVAVVGQQIIGGSRVADGFQDRSLPHFHKNAPQPP 839

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSFYSGL  TEF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD++
Sbjct: 840  SKGFVGNSFYSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDT 899

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEI 820
            VR +GG IVQF +G D +DP +MEG S +P++FDR     +          L P ++   
Sbjct: 900  VRTSGGGIVQFQFGADKLDPVDMEG-SAKPVHFDRTWSHAENLTWSNTDPALLPNEILSF 958

Query: 821  VEKQLAA------------------------YGKE-SCSEAFLNSLRKFFEGQQDKLDKK 855
             +  L+                         Y  E   +  FL S+ ++  G+  KL + 
Sbjct: 959  CDSMLSHERSRYPRRDLVGQGYLEYDNTEDRYTDEHEGARDFLRSVEQYVAGRAAKLTRI 1018

Query: 856  IKFV----EDIGW-------DDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEA 904
            ++      + +G        D++ +  +    + + ++E  L++FI+ C  +Y+   VE 
Sbjct: 1019 LQLTGLTSDPLGAHMEIDLIDEEQKAKKAYADRVAKVSENTLKLFIKLCLEKYKKAHVEP 1078

Query: 905  GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL 964
            G A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+I   L
Sbjct: 1079 GHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKLISTPVIKCPL 1138

Query: 965  ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIV 1024
              N    AAR+VK RIEKT +  +   I+    +   ++V+ +DM+ + D  L I    V
Sbjct: 1139 VQNKEMRAARIVKARIEKTYVSDILSYIEDEWMANAGNVVLQIDMDALSDMQLGIGIHDV 1198

Query: 1025 KESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD---------------KSKIHFELYSLKN 1069
             E+I +  K+K+++  + +   R +EI   VD               ++ +      L+ 
Sbjct: 1199 AEAICRHRKLKVQRGDLHIGQSR-IEIRVRVDENAAAKRTKAKGSEEQADLLVRANYLRR 1257

Query: 1070 VLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKT 1129
            ++P V + G     R +I           +  E   + +LVEG GL+A M  EG+DG KT
Sbjct: 1258 LVPFVAISGYPDATRAII-----------QTSEHDTHTVLVEGYGLRACMNTEGVDGTKT 1306

Query: 1130 KSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRF 1189
             +N++ E +  LGIEAAR  I  EI E M    M ID RHM LLAD+MT++GEVLGITRF
Sbjct: 1307 STNNVMEARDILGIEAARSTIAHEIGEVMG--DMDIDPRHMQLLADVMTYKGEVLGITRF 1364

Query: 1190 GIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRD 1249
            G+ KM  SVL LASFEKT DHLF+A+   + D+IEGVSECIIMG  M +GTG   + +R 
Sbjct: 1365 GLSKMRDSVLQLASFEKTPDHLFDAAAGMKTDKIEGVSECIIMGQTMTVGTGAFHVVRRL 1424

Query: 1250 AV 1251
            A+
Sbjct: 1425 AL 1426


>gi|310799174|gb|EFQ34067.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
          Length = 1342

 Score = 1097 bits (2837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/1320 (45%), Positives = 823/1320 (62%), Gaps = 98/1320 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----S 56
            +R P ++ LR++ + K I ++C     K   C  CG + G ++K V VL + HD+    +
Sbjct: 22   LRRPLLDNLRRSQICKRINEQCR----KVKNCMYCGSVQGQIRK-VGVLKLAHDKFVTYN 76

Query: 57   KVT-------ESLQEFASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCEV 105
            K T       ES  +F  + +  +++ A ++     A   +NP+ VL LFK ++ +DCE+
Sbjct: 77   KSTSAKKVPPESKIKFDESFSEARKNNAELDKHLRKAMEDMNPLRVLNLFKMISPSDCEL 136

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L     RPE  I   +  PP+ IRPSV  D + SNE+DIT +L  I+  +  ++  L 
Sbjct: 137  LGLDPAEGRPEMFIWQFLPAPPVCIRPSVAQDNA-SNEDDITTKLADIVWVSGMIRSALQ 195

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            + +     +  WE LQ++VA Y+NSDV G+       + + GF QRLKGKQGRFRGNLSG
Sbjct: 196  KGSPVQTIMEQWEYLQLQVAMYVNSDVPGLQ-QPGFGKAVRGFCQRLKGKQGRFRGNLSG 254

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I +VA+P  +A+ LTYPERVSD+NI KL++C++NGP+ +PGA
Sbjct: 255  KRVDFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVSDYNIAKLKECVRNGPNIWPGA 314

Query: 283  RMIRYPDGTARVLYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
            + +   D     +  KF  RNQ+A +L+ G +V+RHLED D+VLFNRQPSLH++SIM H 
Sbjct: 315  QQVIKKDDGGYKISLKFGNRNQVAQDLRIGDVVERHLEDNDIVLFNRQPSLHKLSIMSHL 374

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
             ++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV++NL TPKNGE 
Sbjct: 375  VKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLATPKNGEP 434

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A+TQDF+T+++L++ KD F+DR  F+ +C +M DG   +DLP PA+LKP  LWTGKQ+
Sbjct: 435  VIAATQDFITAAYLLSSKDNFFDRKTFTYICMHMMDGKVHLDLPPPAVLKPKALWTGKQV 494

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            F++++RP+    V +NL  K + Y  +          +   M P D ++  RNSE++ G 
Sbjct: 495  FNMMMRPNKESPVKINLDAKCREYKAR--------AGQCPDMDPEDAWLVIRNSEVMCGV 546

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + K+T+G+G KD ++ V+LRD+G  A    MNRLAKL AR + N GFSIGI DV P ++L
Sbjct: 547  MDKSTVGDGKKDSVFYVILRDFGPDAAVATMNRLAKLCARHLTNRGFSIGIGDVFPTEKL 606

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
             +KK  L+       +V I +Y + KL+   GC   QTLE  I+ +L+++R  AG  C+ 
Sbjct: 607  LEKKSTLVKTASLEVDVLIDKYKKNKLEKATGCSMEQTLENSISGLLSKVRTQAGAHCIE 666

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
            +L   N+PL+M++CGSKGS IN++QMVA VGQQ +GG+R  +GF DR+LPHF + A +P 
Sbjct: 667  TLSKNNAPLVMAKCGSKGSNINVAQMVALVGQQIIGGKRVADGFQDRTLPHFHKNAPQPP 726

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSFYSGL  TEF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD++
Sbjct: 727  SKGFVENSFYSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDT 786

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQV--- 817
            VR +GG IVQF +G D +DP +ME  S +P+NFDR     +       +  L P ++   
Sbjct: 787  VRTSGGGIVQFQFGADKLDPVDMEA-SAKPVNFDRTFSHAENLTWNNEEPALLPDEIVRY 845

Query: 818  -SEIVEKQLAAYGKESC---------------------SEAFLNSLRKFFEGQQDKLDKK 855
               ++ ++ A Y ++S                      +  FL SL  +   +  KL + 
Sbjct: 846  CDSMLSRERARYPRKSLLGDLTLDYDNEEERYTDEHEGARDFLRSLESYVGARAQKLRRL 905

Query: 856  IK---FVEDIGWDDKSQILEEVTH------KTSGITEKQLEVFIQTCFSRYRVKRVEAGT 906
            ++      D    D     EE+ H      K + ++E  L +FI+ C  +Y+   VE G 
Sbjct: 906  MELTGLTADADSMDVDVDQEEMRHKKAYAEKVAKVSETTLRLFIKLCLEKYKKAHVEPGH 965

Query: 907  AIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELEC 966
            A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT  L  
Sbjct: 966  AVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKVISTPVITCPLVQ 1025

Query: 967  NDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKE 1026
            N    AAR+VK RIEKT +  +   I+    +   ++V+ +DM+ + D  L I    V E
Sbjct: 1026 NRELTAARIVKARIEKTFVEDILSYIEDEWFAESGNVVLKVDMDALSDMQLGITLGDVAE 1085

Query: 1027 SIVQTPKIKLKQQHIKV----------LD-----FRKLEIFPPVDKSKIHFELYSLKNVL 1071
            +I +  K+K+ +  + +          LD      R ++  P  D   +      L+  +
Sbjct: 1086 AICKHKKMKVSRSDMHIGAGRIEIRVRLDESAAAKRAVKGKPVDDLGDLLVRANYLRRTI 1145

Query: 1072 PMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKS 1131
            P V + G     R +I   E+E   V           LVEG GL + M  EG+DG + K+
Sbjct: 1146 PTVAISGYPLATRAIIQTSEQETHTV-----------LVEGYGLLSCMNTEGVDGRRVKT 1194

Query: 1132 NHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGI 1191
            N++ E +  LGIEAAR  I  EI E M    M+ID RHM LLAD+MT++GEVLGITRFG+
Sbjct: 1195 NNVMECRDVLGIEAARSTIAYEIGEVMG--DMNIDPRHMQLLADVMTYKGEVLGITRFGL 1252

Query: 1192 QKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAV 1251
             KM  SVL LASFEKT DHLF A+   + D+IEGVSECIIMG  M +GTG   + +R A+
Sbjct: 1253 SKMRDSVLQLASFEKTPDHLFEAAAGMKTDQIEGVSECIIMGQTMTVGTGAFHVVRRLAL 1312


>gi|170584528|ref|XP_001897051.1| RNA polymerase Rpb1, domain 1 family protein [Brugia malayi]
 gi|158595586|gb|EDP34129.1| RNA polymerase Rpb1, domain 1 family protein [Brugia malayi]
          Length = 1404

 Score = 1097 bits (2837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/1274 (46%), Positives = 809/1274 (63%), Gaps = 54/1274 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-AVLGIIHDRSKVT 59
            + NP ++ LR+  L K IV      + K   C RCG+ NG+VKKAV AVL I H      
Sbjct: 130  VNNPNLDYLRRKALHKRIV----AASKKITVCNRCGHKNGIVKKAVGAVLKIAHAEVIPA 185

Query: 60   ESLQEFASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYL-----SERPE 113
            ++  E+  A    KE +  +    + +L+P+ V  LF ++   D  +L +      + P 
Sbjct: 186  DNYSEYVYAAQENKELQNLLPKTKFTLLDPLQVQILFNKIEKEDIPLLMVRSADTPKHPS 245

Query: 114  KLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLA 172
             +I+T I VPP  IRPSV+ +  S + E+DIT +L  I+  N  +++   E +       
Sbjct: 246  DVILTRIPVPPCCIRPSVVSEVKSGTTEDDITMKLSEIMLINDVIEKHKKEGSPTKTISE 305

Query: 173  GWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTV 232
             W+ LQV+ A YINS++ G+P  MQ  R   GF QRLKGKQGRFRGNLSGKRV+++GRTV
Sbjct: 306  TWDHLQVQCALYINSELSGLPPDMQPKRTTRGFTQRLKGKQGRFRGNLSGKRVDFSGRTV 365

Query: 233  ISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA-RMIRYPDGT 291
            ISPDPNL+I +V +P+ +A+ILT+PE V+  NIE++R+ I NG D +PGA  ++    G 
Sbjct: 366  ISPDPNLRIDQVGVPVYVAKILTFPEIVNKANIERMRKLILNGDDIHPGANHIVERATGN 425

Query: 292  ARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRF 351
             R L    R   A +LK G I++RHL+D DVVLFNRQPSLH++SIM HRA+I+P RT RF
Sbjct: 426  KRFLKYGNREITAAQLKVGDIIERHLDDNDVVLFNRQPSLHKISIMSHRAKIVPGRTFRF 485

Query: 352  NESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTS 411
            NE  C PYNADFDGDEMN+HVPQT EAR EA LLMGV++NL TP++GE L+A+ QDF+T 
Sbjct: 486  NECACTPYNADFDGDEMNLHVPQTYEARAEASLLMGVKSNLITPRSGEPLIAAIQDFITG 545

Query: 412  SFLITRKDTFYDRAAFSLMCCYMGDG----MDRVDLPTPAILKPVELWTGKQLFSVLIRP 467
            ++L+T KD+F+ R         + D       R+ +P PAILKPVELWTGKQL  ++IRP
Sbjct: 546  TYLLTHKDSFFPRLEVHRFAAAIIDSSSKKQQRIRIPPPAILKPVELWTGKQLVELIIRP 605

Query: 468  HANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLG 527
              + ++ +NLT K K+Y+       G+EE      C  D +V  RNS L+ G L KA LG
Sbjct: 606  DVDSKISLNLTTKNKSYT-------GNEE-----FCVKDSYVIIRNSVLLCGVLDKALLG 653

Query: 528  NGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKL 587
            +G+K  ++ +LLRD+G  A    M RL +++  ++ N GFSIGI DV+P K L  +K  L
Sbjct: 654  SGSKTNIFYILLRDFGEDAAVDAMWRLGRMAPVFLSNRGFSIGIGDVRPSKTLLKEKSDL 713

Query: 588  ISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNS 647
            +S  Y++C+  I+   EG+L+ +PGC   +TLEA+I   L+ IR+ AG+AC+ +L   N+
Sbjct: 714  LSNGYKICDDYIESLKEGRLKAQPGCTEYETLEALILKELSAIRDHAGQACLRNLSRHNA 773

Query: 648  PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVAN 707
            PL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF DRSLPHF R+ K PAAKGFV N
Sbjct: 774  PLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEDRSLPHFERRQKTPAAKGFVEN 833

Query: 708  SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
            SFYSGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K LEDL + YD +VR++ G 
Sbjct: 834  SFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCVNYDGTVRSSVGD 893

Query: 768  IVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQ---------RYLSPQQVS 818
            +++F +G+DG+DPA ME K G  ++F  +L   + T P   +         + +    +S
Sbjct: 894  VIEFTFGEDGLDPALMEAKDGGVVDFKHILEHTRNTLPHLIEDANTTINELQKVVADTIS 953

Query: 819  EIVEKQLAAYGK--ESCSEAFLNSLRKFFEGQQD---KLDKKIKFVEDIGWDDKSQILEE 873
            EI+ K+ A + +  ES    +L    K+++  ++    +D  +            +   E
Sbjct: 954  EIIGKRHAMFREQLESFINEYLKRTNKYYKLPKNCTKHMDNWMPSATHCNDCKNQKFFRE 1013

Query: 874  VTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGV 933
               ++  ++  Q   FI+ C  ++R    E GTA+GA+ A SIGEP TQMTLKTFHFAGV
Sbjct: 1014 TEIRSHCLSRAQAVAFIKLCLRKFRRAICEPGTAVGAVAATSIGEPSTQMTLKTFHFAGV 1073

Query: 934  ASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIK 993
            ASMNITQGVPRIKEIING K ISTP+ITA L    +E  AR VK RIEKT LG++   I+
Sbjct: 1074 ASMNITQGVPRIKEIINGVKLISTPLITAALTNEKDEKLARRVKARIEKTTLGEICDYIE 1133

Query: 994  IVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTP-KIKLKQQHIKVLDFRKLEIF 1052
             V       I++ ++ + ++   L I    + +SI  +   + +K   I +L    + I 
Sbjct: 1134 EVYLPDDCFILLKINAKRVRLLQLEITMSSIAQSICTSKLPVPVKISQITILGKTIMTIR 1193

Query: 1053 PP-VDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVE 1111
            PP + K      +  LK  +  V+VKG+  + R VI   EK         +   Y+LLVE
Sbjct: 1194 PPELAKCSKMMAIQYLKYNIGNVVVKGLPGIVRCVIHADEK---------KGDSYKLLVE 1244

Query: 1112 GTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMM 1171
            G   + VM   G+DG +T  N+   V   LGIEAAR  II EI  TM +HG+ +D+RH+M
Sbjct: 1245 GIDYREVMATLGVDGRRTYFNNALTVADVLGIEAARSSIISEILSTMASHGIGLDQRHVM 1304

Query: 1172 LLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECII 1231
            LLADLMT+RGEVLGITR G+ KM +SVL+LASFEKTADHLF A+   ++D+I GVSECII
Sbjct: 1305 LLADLMTYRGEVLGITRNGLVKMKESVLLLASFEKTADHLFEAAFFSQEDKICGVSECII 1364

Query: 1232 MGIPMPLGTGILKI 1245
            +G P+ +GTG+ K+
Sbjct: 1365 LGTPITIGTGLFKL 1378


>gi|312073209|ref|XP_003139417.1| RNA polymerase Rpb1 [Loa loa]
 gi|307765420|gb|EFO24654.1| RNA polymerase Rpb1 [Loa loa]
          Length = 1403

 Score = 1097 bits (2836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/1275 (46%), Positives = 811/1275 (63%), Gaps = 57/1275 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-AVLGIIHDRSKVT 59
            + NP ++ LR+  L K IV      + K   C RCG+ NG+VKKAV AVL I H      
Sbjct: 130  VNNPNLDYLRRKALHKRIV----AASKKITVCNRCGHKNGIVKKAVGAVLKIAHAEVIPA 185

Query: 60   ESLQEFASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYL-----SERPE 113
            ++  E+  A    KE +  +    + +L+P+ V  LF ++   D  +L +      + P 
Sbjct: 186  DNYSEYVYAAQENKELQNLLPKTKFTLLDPLQVQVLFSKIEKEDIPLLMVRSADTPKHPS 245

Query: 114  KLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLA 172
             +I+T I VPP  IRPSV+ +  S + E+DIT +L  I+  N  +++   E +       
Sbjct: 246  DVILTRIPVPPCCIRPSVVSEVKSGTTEDDITMKLSEIMLINDVIKKHKKEGSPTKTISE 305

Query: 173  GWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTV 232
             W+ LQV+ A YINS++ G+P  MQ  R   GF QRLKGKQGRFRGNLSGKRV+++GRTV
Sbjct: 306  TWDHLQVQCALYINSELSGLPPDMQPKRATRGFTQRLKGKQGRFRGNLSGKRVDFSGRTV 365

Query: 233  ISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA-RMIRYPDGT 291
            ISPDPNLKI +V +P+ +A+ILT+PE V++ NIE++R+ I NG D +PGA  ++    G 
Sbjct: 366  ISPDPNLKIDQVGVPVHVAKILTFPEIVNEANIERMRKLILNGDDIHPGANHIVERATGN 425

Query: 292  ARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRF 351
             R L    R   A +LK G +++RHL+D D+VLFNRQPSLH++SIM HRA+++P RT RF
Sbjct: 426  KRFLRYGNRQITAAQLKVGDVIERHLDDNDIVLFNRQPSLHKISIMSHRAKVVPGRTFRF 485

Query: 352  NESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTS 411
            NE  C PYNADFDGDEMN+HVPQT EAR EA LLMGV++NL TP++GE L+A+ QDF+T 
Sbjct: 486  NECACTPYNADFDGDEMNLHVPQTYEARAEASLLMGVKSNLITPRSGEPLIAAIQDFITG 545

Query: 412  SFLITRKDTFYDRAAFSLMCCYMGDG----MDRVDLPTPAILKPVELWTGKQLFSVLIRP 467
            ++L+T KD+F+ R+        + D       R+ +P PAILKP ELWTGKQL  ++IRP
Sbjct: 546  TYLLTHKDSFFPRSEVHRFAAAIIDSNSKKQQRIRIPPPAILKPAELWTGKQLAELIIRP 605

Query: 468  HANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLG 527
              + ++ +NLT K K+Y+       G+EE      C  D +V  RNS L+ G L KA LG
Sbjct: 606  DVDSKINLNLTTKNKSYT-------GNEE-----FCVKDSYVIIRNSVLLCGVLDKALLG 653

Query: 528  NGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKL 587
            +G+K  ++ +LLRD+G  A    M RL ++++ ++ N GFSIGI DV+P K L  +K  L
Sbjct: 654  SGSKTSIFYILLRDFGEDAAIDAMWRLGRMASVFLSNRGFSIGIGDVRPSKALLKEKSDL 713

Query: 588  ISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNS 647
            +   Y+VC+  I+   EG+L+ +PGC   +TLEA+I   L+ IR+ AG+AC+ +L   N+
Sbjct: 714  LRNGYKVCDDYIESLKEGRLKAQPGCTEYETLEALILKELSAIRDHAGQACLRNLSRHNA 773

Query: 648  PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVAN 707
            PL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF DRSLPHF R+ K PAAKGFV N
Sbjct: 774  PLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEDRSLPHFERRQKTPAAKGFVEN 833

Query: 708  SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
            SFYSGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K LEDL I YD +VR++ G 
Sbjct: 834  SFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCINYDGTVRSSVGD 893

Query: 768  IVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRY-LSPQQVSEIVEKQL- 825
            +++F +G+DG+DPA ME K G  ++F  +L   + T P + +   ++  ++ +IV   + 
Sbjct: 894  VIEFKFGEDGLDPALMESKDGGVVDFKHILEHTRHTVPHSTEDVDITNDEIQKIVTDTIN 953

Query: 826  AAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKF----VEDIGW--------DDKSQ-ILE 872
               GKE     F   L  F      K DK  K     ++ +G         D K+Q    
Sbjct: 954  EKIGKEHV--MFREQLESFISEYLRKTDKYYKLSKNCIKHMGLMSSETQCNDCKNQNFFR 1011

Query: 873  EVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 932
            E   K+  ++  Q   F+  C  ++R    E GTA+GA+ A SIGEP TQMTLKTFHFAG
Sbjct: 1012 ETEIKSHCLSRAQAFGFVDLCSRKFRRAICEPGTAVGAVAATSIGEPSTQMTLKTFHFAG 1071

Query: 933  VASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSI 992
            VASMNITQGVPRIKEIING K ISTPIITA L    +E  AR VK RIEKT LG++   I
Sbjct: 1072 VASMNITQGVPRIKEIINGVKLISTPIITAALMNEKDEKLARRVKARIEKTTLGEICDYI 1131

Query: 993  KIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTP-KIKLKQQHIKVLDFRKLEI 1051
            + V       I++ ++ + ++   L I    + +SI  +   + +K   IK+L    + I
Sbjct: 1132 EEVYLPDDCFILLKINAKRVRLLQLEITMSSIAQSICSSKLPVPVKISQIKILGKTIMTI 1191

Query: 1052 FPP-VDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLV 1110
             PP + K      +  LK  +  V+VKG+  + R VI   EK         +   Y+LLV
Sbjct: 1192 RPPELAKCSKMMAIQYLKYNIGNVVVKGLPGIVRCVIHADEK---------KGDSYKLLV 1242

Query: 1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
            EG   + VM   G+DG +T  N+   V   LGIEAAR  II EI  TM +HG+ +D+RH+
Sbjct: 1243 EGIDYREVMATVGVDGRRTYFNNALTVADVLGIEAARSSIISEILSTMASHGIGLDQRHV 1302

Query: 1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
            MLLADLMT+RGEVLGITR G+ KM +SVL+LASFEKTADHLF A+   ++D+I GVSECI
Sbjct: 1303 MLLADLMTYRGEVLGITRNGLVKMKESVLLLASFEKTADHLFEAAFFSQEDKICGVSECI 1362

Query: 1231 IMGIPMPLGTGILKI 1245
            I+G P+ +GTG+ K+
Sbjct: 1363 ILGTPITIGTGLFKL 1377


>gi|302409260|ref|XP_003002464.1| DNA-directed RNA polymerase III subunit RPC1 [Verticillium albo-atrum
            VaMs.102]
 gi|261358497|gb|EEY20925.1| DNA-directed RNA polymerase III subunit RPC1 [Verticillium albo-atrum
            VaMs.102]
          Length = 1456

 Score = 1096 bits (2835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/1322 (45%), Positives = 826/1322 (62%), Gaps = 101/1322 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----S 56
            +R P ++ LR+T + K I ++C     K   C  CG ING ++K V VL ++HD+    +
Sbjct: 135  LRRPFIDNLRRTQICKKINEQCR----KTKTCHYCGSINGQIRK-VGVLKLVHDKFVAYN 189

Query: 57   KVT-------ESLQEFASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCEV 105
            K T       ES   F ++    K+    ++     A   LNP+ VL LFK ++ TDCE+
Sbjct: 190  KSTSMKKVPPESKIVFDASFDEAKKQNPDLDKHLRKAMEDLNPLRVLNLFKTISPTDCEL 249

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L     RPE  I   +  PP+ IRPSV  D + S E+D+T +L  I+  +  ++  L 
Sbjct: 250  LGLDPVEGRPEMFIWQFLPAPPVCIRPSVAQDNA-STEDDLTTKLADIVWISGMIRLALQ 308

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            + +     +  WE LQ+++A Y+NSDV G+       + + GF QRLKGKQGRFRGNLSG
Sbjct: 309  KGSPVQTIMEQWEYLQLQIAMYVNSDVPGLQ-QPGFGKTVRGFCQRLKGKQGRFRGNLSG 367

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL IT+VAIPI +A+ LTYPERV+D++++KLR+C+QNGPD +PGA
Sbjct: 368  KRVDFSGRTVISPDPNLGITQVAIPILVAKNLTYPERVNDYSLKKLRKCVQNGPDVWPGA 427

Query: 283  RMIRYPDGTARVLYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
            + +   D     +  KF  R Q+A +LK G +V+RH+ED D+VLFNRQPSLH++SIM H 
Sbjct: 428  QQVIKSDEGGYKISLKFGNRGQVARDLKVGDVVERHIEDNDIVLFNRQPSLHKLSIMSHL 487

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
             ++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV++NL TPKNGE 
Sbjct: 488  VKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLATPKNGEP 547

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A+TQDF+T+++L++ KD F+DR  F+ +  +M DG+  +DLP PAILKP  LWTGKQ+
Sbjct: 548  IIAATQDFITAAYLLSGKDRFFDRKTFTYIVMHMMDGITHLDLPPPAILKPQALWTGKQV 607

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            FS+++RP+   +V +NL  K + Y  K          +   M P D ++  RNSE++ G+
Sbjct: 608  FSMMLRPNKECQVKINLDAKCREYKAK--------PGQCPDMDPEDAWLVIRNSEVMCGR 659

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + K+T+G G KD ++ V+LRD+G       MNRLAKL AR + N GFSIG+ DV P ++L
Sbjct: 660  MDKSTVGGGKKDSVFYVILRDFGPDEAVTAMNRLAKLCARQLTNRGFSIGVGDVFPTEQL 719

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
              KK KLI +     +  I  Y +GKL+   GC+  QTLE  I+ +L+++R  AG  C+ 
Sbjct: 720  LVKKKKLIEDANIQVDELINTYKKGKLEKATGCNMEQTLENSISGLLSKVRTQAGAQCIQ 779

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
            +L   N+PL+M++ GSKGS IN++QMVA VGQQ +GG R  +GF DRSLPHF + A +P 
Sbjct: 780  TLSRNNAPLVMAKSGSKGSEINVAQMVAVVGQQIIGGSRVADGFQDRSLPHFHKNAPQPP 839

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSFYSGL  TEF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD++
Sbjct: 840  SKGFVGNSFYSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDT 899

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEI 820
            VR +GG IVQF +G D +DP +MEG S +P++FDR     +          L P ++   
Sbjct: 900  VRTSGGGIVQFQFGADKLDPVDMEG-SAKPVHFDRTWSHAENLTWSNTDPALLPNEILSF 958

Query: 821  VEKQLAA------------------------YGKE-SCSEAFLNSLRKFFEGQQDKLDKK 855
             +  L+                         Y  E   +  FL S+ ++  G+  KL + 
Sbjct: 959  CDSMLSHERSRYPRRDLVGQGYLEYDNTEDRYTDEHEGARDFLRSVEQYVAGRAAKLTRI 1018

Query: 856  IKFV----EDIGW-------DDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEA 904
            ++      + +G        D++ +  +    + + ++E  L++FI+ C  +Y+   VE 
Sbjct: 1019 LQLTGLTSDPLGAHMEIDLIDEEQKAKKAYADRVAKVSENTLKLFIKLCLEKYKKAHVEP 1078

Query: 905  GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL 964
            G A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+I   L
Sbjct: 1079 GHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKLISTPVIKCPL 1138

Query: 965  ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIV 1024
              N    AAR+VK RIEKT +  +   I+    +   ++V+ +DM+ + D  L I    V
Sbjct: 1139 VQNKEMRAARIVKARIEKTYVSDILSYIEDEWMANAGNVVLQIDMDALSDMQLGIGIHDV 1198

Query: 1025 KESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD---------------KSKIHFELYSLKN 1069
             E+I +  K+K+++  + +   R +EI   VD               ++ +      L+ 
Sbjct: 1199 AEAICRHRKLKVQRGDLHIGQSR-IEIRVRVDENAAAKRTKAKGSEEQADLLVRANYLRR 1257

Query: 1070 VLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKT 1129
            ++P V + G     R +I           +  E   + +LVEG GL+A M  EG+DG KT
Sbjct: 1258 LVPFVAISGYPDATRAII-----------QTSEHDTHTVLVEGYGLRACMNTEGVDGTKT 1306

Query: 1130 KSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRF 1189
             +N++ E +  LGIEAAR  I  EI E M    M ID RHM LLAD+MT++GEVLGITRF
Sbjct: 1307 STNNVMEARDILGIEAARSTIAHEIGEVMG--DMDIDPRHMQLLADVMTYKGEVLGITRF 1364

Query: 1190 GIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRD 1249
            G+ KM  SVL LASFEKT DHLF+A+   + D+IEGVSECIIMG  M +GTG   + +R 
Sbjct: 1365 GLSKMRDSVLQLASFEKTPDHLFDAAAGMKTDKIEGVSECIIMGQTMTVGTGAFHVVRRL 1424

Query: 1250 AV 1251
            A+
Sbjct: 1425 AL 1426


>gi|401882581|gb|EJT46834.1| DNA-directed RNA polymerase iii largest subunit [Trichosporon asahii
            var. asahii CBS 2479]
          Length = 1433

 Score = 1093 bits (2827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/1325 (45%), Positives = 818/1325 (61%), Gaps = 127/1325 (9%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD--RSKV 58
             R P++E L++    K ++  C     K   CP C   NG+VKK+   L I H+  RS  
Sbjct: 149  FRRPRIEMLQRQAASKGVLASCK----KVTTCPYCFAPNGIVKKS-GTLKISHEPFRSNK 203

Query: 59   -----TESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE--- 110
                  E L  F + ++      + +  +   LNP+ VL LF+R+T  DCE+L L     
Sbjct: 204  NADAKAEWLNGFKAVVSEQSAIGSHLGKSVEDLNPLKVLELFRRVTAEDCELLSLHPDVG 263

Query: 111  RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
            RPE  + T I+VPP  IRPSV  +   +NE+D+T +L  I+  N  L   + +     ++
Sbjct: 264  RPEDYLWTYISVPPPCIRPSVASEAG-NNEDDLTAKLVEIVNQNRMLLSVMEKGQGLTQT 322

Query: 171  LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
            +  W+TL   VA YINS   G+  +   ++P+ GFVQRLKGKQGRFRGNLSGKRV+++GR
Sbjct: 323  ILNWDTLSQMVALYINSQTPGI--NTTGSKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGR 380

Query: 231  TVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIR---- 286
            TVI PDPNL+I EVA+P ++A  L+YPERV+D+N+E +R+ + NG   +PGA +I     
Sbjct: 381  TVIGPDPNLRIDEVAVPEKIAVKLSYPERVTDYNMEAMRKAVVNGSKMHPGANIIETGRG 440

Query: 287  -YPDGTARVLYG-KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIM 344
             +P  + + +   + R ++A  L+ G IV RH+ DGD+VLFNRQPSLH++SIMCHR R+ 
Sbjct: 441  PFPRRSLQPIKDIERRKEMARNLRVGDIVHRHVRDGDIVLFNRQPSLHKISIMCHRVRVR 500

Query: 345  PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAS 404
            PWRT R NE VCNPYNADFDGDEMN+H                        +      + 
Sbjct: 501  PWRTFRLNECVCNPYNADFDGDEMNLH------------------------RGSSYRGSG 536

Query: 405  TQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVL 464
              DF+T+S+L++R+D   DR  F+ +C Y+GDG   +DLP P I KPV LWTGKQ++++L
Sbjct: 537  AHDFITASYLLSRRDRLLDRQQFTQICSYLGDGDLEIDLPPPTIWKPVRLWTGKQVYNLL 596

Query: 465  IRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKA 524
            +RP+   +V +NL  K +T    LI    +++  ++ M PNDG++  +NSE++ G   K 
Sbjct: 597  MRPNKKSKVLINLEAKCRT----LIEPRKEDKFFMD-MAPNDGYLVIQNSEIMCGVFDKN 651

Query: 525  TLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKK 584
            T+G+G K+ ++ V+LRDYG +  +  M RLAKLSARW+ N GFS+GI+DV P + L   K
Sbjct: 652  TVGDGKKNSVFGVMLRDYGPNEAAIAMTRLAKLSARWLANQGFSLGINDVIPGEMLQSNK 711

Query: 585  GKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW 644
             +++ E YE C   I+    GKLQ  PGCD   TLE +I+ IL+ +RE  G  CM  L  
Sbjct: 712  DQMVEEAYEKCESNIELAKRGKLQNAPGCDQETTLEQLISGILSGVREAVGDVCMNELSR 771

Query: 645  RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 704
             N+PLIM+ CGSK            VGQQ + G R PNGF DRSLPHF +K+K P +KGF
Sbjct: 772  HNAPLIMATCGSK------------VGQQIIAGHRVPNGFQDRSLPHFRKKSKNPPSKGF 819

Query: 705  VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
            V NSF+SGL+ TEF FH + GREGLVDTAVKTA+TGYM+RRL+KALEDLS QYD SVRN+
Sbjct: 820  VRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMARRLMKALEDLSTQYDLSVRNS 879

Query: 765  GGCIVQFLYGDDGMDPANMEGKS-------------------GEPLN-------FDRLLM 798
             G IVQF YGDD +DPA +EG +                   G PL          R+  
Sbjct: 880  VGGIVQFQYGDDNLDPACLEGDATPVEYVRSWNHACRTASSEGRPLYPYEIQQIARRIYP 939

Query: 799  KVKA-------TCPPAGQRYLSPQQVSEI-VE-KQLAAYGKESCSEAFLNSLRKFFEGQQ 849
            ++ A         P  GQ+  +P  + E+ VE +Q+    +E+  +  ++ +      Q+
Sbjct: 940  EIVAEEYAEEDVKPRRGQKRKAPPTIPEVPVEWRQVHVKFRENTYKFIVDKIVNTMAAQR 999

Query: 850  DK-------LDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRV 902
            +          ++I+  ED   D     +  V + +  +TE Q+E F++ C +RY + ++
Sbjct: 1000 EARGVPAALTKEEIEEYEDF-LDPHDPAVRAVLNNSHKVTEAQIESFLENCRTRYLLAKI 1058

Query: 903  EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITA 962
            E G+ +GA+GAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN AK ISTPIIT 
Sbjct: 1059 EPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKVISTPIITV 1118

Query: 963  ELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINAD 1022
            EL+  ++E  AR+VKGRIE+T LG++A  I+   T   A I I +DM+ IQ   L I  D
Sbjct: 1119 ELQKPESEPVARIVKGRIERTTLGEIASIIEEAWTGAGAFIEIHIDMDAIQKLQLEITLD 1178

Query: 1023 IVKESIVQTPKIKLKQQHIKVLDFR---KLEIFPPVDKSK---IHFELYSLKNVLPMVIV 1076
             +K ++V  PK+K+K   + +   +   K+ +  P+DK K   ++  L SLK  +P V V
Sbjct: 1179 TIKTALVLAPKLKIKDSDVTINSRKARLKIYVADPLDKDKCDGVYERLKSLKRAIPSVQV 1238

Query: 1077 KGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFE 1136
            KG+  V+R VI   EK+K      GE   Y+LLV G GLQ VMG +G++G +T++NH+ E
Sbjct: 1239 KGLPEVDRSVITHDEKKK------GE---YKLLVTGYGLQEVMGTDGVNGYQTRTNHVME 1289

Query: 1137 VQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDK 1196
              + LGIEAAR  I DEI  TM++HGMSID RH+MLL D+MT++GEVLGITRFG+QKM  
Sbjct: 1290 TAKVLGIEAARQTIYDEIQHTMRSHGMSIDPRHVMLLGDVMTYKGEVLGITRFGVQKMKD 1349

Query: 1197 SVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP-LGTGILKIRQRDAVPPML 1255
            SVLMLASFEKT DHLF+AS+  + D I+GVSECIIMG P P  GT +  I      PP L
Sbjct: 1350 SVLMLASFEKTTDHLFDASLYSKVDDIQGVSECIIMGTPAPSCGTSLASIV---TPPPFL 1406

Query: 1256 KYGAP 1260
                P
Sbjct: 1407 PKRKP 1411


>gi|406700618|gb|EKD03783.1| DNA-directed RNA polymerase iii largest subunit [Trichosporon asahii
            var. asahii CBS 8904]
          Length = 1433

 Score = 1093 bits (2826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/1325 (45%), Positives = 817/1325 (61%), Gaps = 127/1325 (9%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKV-- 58
             R P++E L++    K ++  C     K   CP C   NG+VKK+   L I H+  +   
Sbjct: 149  FRRPRIEMLQRQAASKGVLASCK----KVTTCPYCFAPNGIVKKS-GTLKISHEPFRSNK 203

Query: 59   -----TESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE--- 110
                  E L  F + ++      + +  +   LNP+ VL LF+R+T  DCE+L L     
Sbjct: 204  NADAKAEWLNGFKAVVSEQSAIGSHLGKSVEDLNPLKVLELFRRVTAEDCELLSLHPDVG 263

Query: 111  RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
            RPE  + T I+VPP  IRPSV  +   +NE+D+T +L  I+  N  L   + +     ++
Sbjct: 264  RPEDYLWTYISVPPPCIRPSVASEAG-NNEDDLTAKLVEIVNQNRMLLSVMEKGQGLTQT 322

Query: 171  LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
            +  W+TL   VA YINS   G+  +   ++P+ GFVQRLKGKQGRFRGNLSGKRV+++GR
Sbjct: 323  ILNWDTLSQMVALYINSQTPGI--NTTGSKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGR 380

Query: 231  TVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIR---- 286
            TVI PDPNL+I EVA+P ++A  L+YPERV+D+N+E +R+ + NG   +PGA +I     
Sbjct: 381  TVIGPDPNLRIDEVAVPEKIAVKLSYPERVTDYNMEAMRKAVVNGSKMHPGANIIETGRG 440

Query: 287  -YPDGTARVLYG-KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIM 344
             +P  + + +   + R ++A  L+ G IV RH+ DGD+VLFNRQPSLH++SIMCHR R+ 
Sbjct: 441  PFPRRSLQPIKDIERRKEMARNLRVGDIVHRHVRDGDIVLFNRQPSLHKISIMCHRVRVR 500

Query: 345  PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAS 404
            PWRT R NE VCNPYNADFDGDEMN+H                        +      + 
Sbjct: 501  PWRTFRLNECVCNPYNADFDGDEMNLH------------------------RGSSYRGSG 536

Query: 405  TQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVL 464
              DF+T+S+L++R+D   DR  F+ +C Y+GDG   +DLP P I KPV LWTGKQ++++L
Sbjct: 537  AHDFITASYLLSRRDRLLDRQQFTQICSYLGDGDLEIDLPPPTIWKPVRLWTGKQVYNLL 596

Query: 465  IRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKA 524
            +RP+   +V +NL  K +T    LI    +++  ++ M PNDG++  +NSE++ G   K 
Sbjct: 597  MRPNKKSKVLINLEAKCRT----LIEPRKEDKFFMD-MAPNDGYLVIQNSEIMCGVFDKN 651

Query: 525  TLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKK 584
            T+G+G K+ ++ V+LRDYG +  +  M RLAKLSARW+ N GFS+GI+DV P + L   K
Sbjct: 652  TVGDGKKNSVFGVMLRDYGPNEAAIAMTRLAKLSARWLANQGFSLGINDVIPGEMLQSNK 711

Query: 585  GKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW 644
             +++ E YE C   I+    GKLQ  PGCD   TLE +I+ IL+ +RE  G  CM  L  
Sbjct: 712  DQMVEEAYEKCESNIELAKRGKLQNAPGCDQETTLEQLISGILSGVREAVGDVCMNELSR 771

Query: 645  RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 704
             N+PLIM+ CGSK            VGQQ + G R PNGF DRSLPHF +K+K P +KGF
Sbjct: 772  HNAPLIMATCGSK------------VGQQIIAGHRVPNGFQDRSLPHFRKKSKNPPSKGF 819

Query: 705  VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
            V NSF+SGL+ TEF FH + GREGLVDTAVKTA+TGYM+RRL+KALEDLS QYD SVRN+
Sbjct: 820  VRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMARRLMKALEDLSTQYDLSVRNS 879

Query: 765  GGCIVQFLYGDDGMDPANMEGKS-------------------GEPLN-------FDRLLM 798
             G IVQF YGDD +DPA +EG +                   G PL          R+  
Sbjct: 880  VGGIVQFQYGDDNLDPACLEGDATPVEYVRSWNHACRTASSEGRPLYPYEIQQIARRIYP 939

Query: 799  KVKA-------TCPPAGQRYLSPQQVSEI-VE-KQLAAYGKESCSEAFLNSLRKFFEGQQ 849
            ++ A         P  GQ+  +P  + E+ VE +Q+    +E+  +  ++ +      Q+
Sbjct: 940  EIVAEEYAEEDVKPRRGQKRKAPPTIPEVPVEWRQVHVKFRENTYKFIVDKIVNTMAAQR 999

Query: 850  DK-------LDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRV 902
            +          ++I+  ED   D     +  V + +  +TE Q+E F++ C +RY + ++
Sbjct: 1000 EARGVPAALTKEEIEEYEDF-LDPHDPAVRAVLNNSHKVTEAQIESFLENCRTRYLLAKI 1058

Query: 903  EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITA 962
            E G+ +GA+GAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN AK ISTPIIT 
Sbjct: 1059 EPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKVISTPIITV 1118

Query: 963  ELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINAD 1022
            EL+  ++E  AR+VKGRIE+T LG++A  I+   T   A I I +DM+ IQ   L I  D
Sbjct: 1119 ELQKPESEPVARIVKGRIERTTLGEIASIIEEAWTGAGAFIEIHIDMDAIQKLQLEITLD 1178

Query: 1023 IVKESIVQTPKIKLKQQHIKVLDFR---KLEIFPPVDKSK---IHFELYSLKNVLPMVIV 1076
             +K ++V  PK+K+K   + +   +   K+ +  P+DK K   ++  L SLK  +P V V
Sbjct: 1179 TIKTALVLAPKLKIKDSDVTINSRKARLKIYVADPLDKDKCDGVYERLKSLKRAIPSVQV 1238

Query: 1077 KGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFE 1136
            KG+  V+R VI   EK+K      GE   Y+LLV G GLQ VMG +G++G +T++NH+ E
Sbjct: 1239 KGLPEVDRSVITHDEKKK------GE---YKLLVTGYGLQEVMGTDGVNGYQTRTNHVME 1289

Query: 1137 VQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDK 1196
              + LGIEAAR  I DEI  TM++HGMSID RH+MLL D+MT++GEVLGITRFG+QKM  
Sbjct: 1290 TAKVLGIEAARQTIYDEIQHTMRSHGMSIDPRHVMLLGDVMTYKGEVLGITRFGVQKMKD 1349

Query: 1197 SVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP-LGTGILKIRQRDAVPPML 1255
            SVLMLASFEKT DHLF+AS+  + D I+GVSECIIMG P P  GT +  I      PP L
Sbjct: 1350 SVLMLASFEKTTDHLFDASLYSKVDDIQGVSECIIMGTPAPSCGTSLASIV---TPPPFL 1406

Query: 1256 KYGAP 1260
                P
Sbjct: 1407 PKRKP 1411


>gi|392869043|gb|EAS30407.2| DNA-directed RNA polymerase III largest subunit [Coccidioides immitis
            RS]
          Length = 1444

 Score = 1092 bits (2824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1302 (46%), Positives = 813/1302 (62%), Gaps = 90/1302 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKVT 59
            MR   ++ LR+  + K I  +C     K   C  C  +NG+VKKA  + L I HD+ +  
Sbjct: 138  MRRQGIDNLRRMQINKRINDRCR----KTRTCYVCHAVNGVVKKAGTSALKITHDKFRAF 193

Query: 60   ESLQE-----------FASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCE 104
             +              F  +    K S   +          LNP+ VL LF+R++D DCE
Sbjct: 194  NASTSAKKVPPPSKLVFDRSFEEAKRSNTDIEKHFKKVQDDLNPLRVLKLFRRISDEDCE 253

Query: 105  VLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP++IRPSV  +G+ S E+D+T +L  I+Q+N +L+  +
Sbjct: 254  LLGLNPEEVRPEMFLWQYIPAPPVSIRPSVGQEGA-STEDDLTAKLGDIVQSNINLKNAI 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
             +       +  W+ +Q+++A YINSDV G+       +P+ G  QRLKGKQGRFRGNLS
Sbjct: 313  NKGAPVQTIIECWDYMQLQIAVYINSDVPGLQ-KADFGKPIRGICQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL+I EVA+P  +A  +TYPERV+ +N EKLR+ ++NG   +PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPG 431

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +     T +V   YG   N +A +L+ G +V+RHLEDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYLSKRGTTFKVFLKYGNL-NLMADQLEEGDVVERHLEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
              ++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491  FVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++A+ QDF+T+++L++ KD FYDR +F+  C YM     + DLP PA+LKP  LWTGKQ
Sbjct: 551  PIIAAIQDFITAAYLLSSKDNFYDRGSFTQTCGYMLQPGTKFDLPPPAVLKPQMLWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F+VL+RP     V VNL    + +       +G        + PNDG++  RNSE++ G
Sbjct: 611  VFNVLMRPSKESPVLVNLDAACREFRA----PKGTPR----DLDPNDGWLCIRNSEIMCG 662

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K+T+G+G KD ++ V+LRD+G    +  MNRL++LSARW  N GFSIGI DV P   
Sbjct: 663  VMDKSTIGSGKKDSVFYVMLRDFGPQVAAEAMNRLSRLSARWFTNIGFSIGITDVYPGDS 722

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K +L+ E Y  C+  I+ +  GKL+  PG D  Q +E+ I+ IL+++R+ AG+ C+
Sbjct: 723  LLQAKKQLVEEAYAQCDALIQLFKAGKLEKAPGGDEQQNMESQISGILSKVRQQAGEQCI 782

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN++QM+A VGQQ + G+R  +GF DR+LPHFP+ A++P
Sbjct: 783  AELSKWNSPLIMATSGSKGSTINVAQMIALVGQQIIAGQRVQDGFQDRTLPHFPKYARQP 842

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AKGFV NSF+SGL  +EFFFH + GREGL+DTAVKTA+TGYMSRRL+K+LEDLS +YD+
Sbjct: 843  PAKGFVRNSFFSGLIPSEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLSSRYDD 902

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +MEGK+ +P++FDR     + T      R L P +V +
Sbjct: 903  TVRNSSSNIVQFQYGDDKLDPVDMEGKA-KPVHFDRTFTHAETTTYSKEDRGLLPSEVID 961

Query: 820  IVEKQLAA-YGKESCSEAFLNSLRKFFEGQQ--DKLDKKIKFVEDIGWDDKSQILEEVTH 876
            +  + LA    K    +   NSL          D+L+    F++ I  +D  Q   +  H
Sbjct: 962  LCRQMLAPERAKLDRFDLLGNSLEYTDRSDHGIDQLESNRDFLQSI--EDYIQAKADRLH 1019

Query: 877  KTSG-----------------ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEP 919
              +G                 ++ K L  FI +C ++Y+  +VE G A+GA+GAQSIGEP
Sbjct: 1020 SVTGTEADTLEGQMALSHTVKLSAKTLTTFITSCLTKYKKAQVEPGHAVGAVGAQSIGEP 1079

Query: 920  GTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGR 979
            GTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTPIIT EL   ++  AA++VKGR
Sbjct: 1080 GTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPIITCELVNKEDVRAAQIVKGR 1139

Query: 980  IEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHL------CINADIVKESIVQTPK 1033
            +EKT +  +   I+   TS +A I I +D  TIQ   L       +NA I K    ++  
Sbjct: 1140 VEKTFIKDIIYYIEEAWTSSVAYINIKIDFSTIQALQLELTLRDILNA-IKKHKRFRSDD 1198

Query: 1034 IKLKQ--QHIKVL--------DFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVE 1083
            +K +    HI +            K E       S  +  L  LK +LP + V G     
Sbjct: 1199 LKFRSFGSHIHIFVDQATTKTSLTKAE--QAATGSDPYIRLKHLKRLLPTIQVLGHPQCS 1256

Query: 1084 RVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
            R +I   E                LLVEG GL+A M  +GI G +T++N+I E +  LGI
Sbjct: 1257 RAIIRTDETNTTNT----------LLVEGYGLRACMTTDGIFGTRTRTNNIMETKDVLGI 1306

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            EAAR  I+DEI++ MK   M ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LAS
Sbjct: 1307 EAARTTIVDEISDVMK--DMGIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLAS 1364

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            FEKTADHLF+A   GR D +EGVSECII+G  + LGTG +++
Sbjct: 1365 FEKTADHLFDAGGAGRTDLVEGVSECIILGKSVSLGTGAMEM 1406


>gi|320035344|gb|EFW17285.1| DNA-directed RNA polymerase III largest subunit [Coccidioides
            posadasii str. Silveira]
          Length = 1444

 Score = 1092 bits (2823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/1302 (45%), Positives = 813/1302 (62%), Gaps = 90/1302 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKVT 59
            MR   ++ LR+  + K I  +C     K   C  C  +NG+VKKA  + L I HD+ +  
Sbjct: 138  MRRQGIDNLRRMQINKRINDRCR----KTRTCYVCHAVNGVVKKAGTSALKITHDKFRAF 193

Query: 60   ESLQE-----------FASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCE 104
             +              F  +    K S   +          LNP+ VL LF+R++D DCE
Sbjct: 194  NASTSAKKVPPPSKLVFDRSFEEAKRSNTDIEKHFKKVQDDLNPLRVLKLFRRISDEDCE 253

Query: 105  VLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP++IRPSV  +G+ S E+D+T +L  I+Q+N +L+  +
Sbjct: 254  LLGLNPEEVRPEMFLWQYIPAPPVSIRPSVGQEGA-STEDDLTAKLGDIVQSNINLKNAI 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
             +       +  W+ +Q+++A YINSDV G+       +P+ G  QRLKGKQGRFRGNLS
Sbjct: 313  NKGAPVQTIIECWDYMQLQIAVYINSDVPGLQ-KADFGKPIRGICQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL+I EVA+P  +A  +TYPERV+ +N EKLR+ ++NG   +PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPG 431

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +     T +V   YG   N +A +L+ G +V+RHLEDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYLSKRGTTFKVFLKYGNL-NLMADQLEEGDVVERHLEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
              ++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491  FVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++A+ QDF+T+++L++ KD FYDR +F+ +C YM     + DLP PA+LKP  LWTGKQ
Sbjct: 551  PIIAAIQDFITAAYLLSSKDNFYDRGSFTQICGYMLQPGTKFDLPPPAVLKPQMLWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F+VL+RP     V VNL    + +       +G        + PNDG++  RNSE++ G
Sbjct: 611  VFNVLMRPSKESPVLVNLDAACREFRAP----KGTPR----DLDPNDGWLCIRNSEIMCG 662

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K+T+G+G KD ++ V+LRD+G    +  MNRL++LSARW  N GFSIGI DV P   
Sbjct: 663  VMDKSTIGSGKKDSVFYVMLRDFGPQVAAEAMNRLSRLSARWFTNIGFSIGITDVYPGDS 722

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K +L+ E Y  C+  I+ +  GKL+  PG D  Q +E+ I+ IL+++R+ AG+ C+
Sbjct: 723  LLQAKKQLVEEAYAQCDALIQLFKAGKLEKAPGGDEQQNMESQISGILSKVRQQAGEQCI 782

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN++QM+A VGQQ + G+R  +GF DR+LPHFP+ A++P
Sbjct: 783  AELSKWNSPLIMATSGSKGSTINVAQMIALVGQQIIAGQRVQDGFQDRTLPHFPKYARQP 842

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AKGFV NSF+SGL  +EFFFH + GREGL+DTAVKTA+TGYMSRRL+K+LEDLS +YD+
Sbjct: 843  PAKGFVRNSFFSGLIPSEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLSSRYDD 902

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +MEGK+ +P++FDR     + T      R L P +V +
Sbjct: 903  TVRNSSSNIVQFQYGDDKLDPVDMEGKA-KPVHFDRTFTHAETTTYSKEDRGLLPSEVMD 961

Query: 820  IVEKQLAA-YGKESCSEAFLNSLRKFFEGQQ--DKLDKKIKFVEDIGWDDKSQILEEVTH 876
            +  + LA    K    +   NSL          D+L+    F++ I  +D  Q   +  H
Sbjct: 962  LCRQMLAPERAKLDRFDLLGNSLEYTDRSDHGIDQLESNRDFLQSI--EDYIQAKADRLH 1019

Query: 877  KTSG-----------------ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEP 919
              +G                 ++ K L  FI +C ++Y+  +VE G A+GA+GAQSIGEP
Sbjct: 1020 SATGTEADTLEGQMALSHTVKLSAKTLTTFITSCLTKYKKAQVEPGHAVGAVGAQSIGEP 1079

Query: 920  GTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGR 979
            GTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTPIIT EL   ++  AA++VKGR
Sbjct: 1080 GTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPIITCELVNKEDVRAAQIVKGR 1139

Query: 980  IEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHL------CINADIVKESIVQTPK 1033
            +EKT +  +   I+   T  +A I I +D  TIQ   L       +NA I K    ++  
Sbjct: 1140 VEKTFIKDIIYYIEEAWTGSVAYINIKIDFSTIQALQLELTLRDILNA-IKKHKRFRSDD 1198

Query: 1034 IKLKQ--QHIKVL--------DFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVE 1083
            +K +    HI +            K E       S  +  L  LK +LP + V G     
Sbjct: 1199 LKFRSFGSHIHIFVDQATTKTSLTKAE--QAATGSDPYIRLKHLKRLLPTIQVLGHPQCS 1256

Query: 1084 RVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
            R +I   E                LLVEG GL+A M  +GI G +T++N+I E +  LGI
Sbjct: 1257 RAIIRTDETNTTNT----------LLVEGYGLRACMTTDGIFGTRTRTNNIMETKDVLGI 1306

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            EAAR  I+DEI++ MK   M ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LAS
Sbjct: 1307 EAARTTIVDEISDVMK--DMGIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLAS 1364

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            FEKTADHLF+A   GR D +EGVSECII+G  + LGTG +++
Sbjct: 1365 FEKTADHLFDAGGAGRTDLVEGVSECIILGKSVSLGTGAMEM 1406


>gi|195432649|ref|XP_002064329.1| GK20105 [Drosophila willistoni]
 gi|194160414|gb|EDW75315.1| GK20105 [Drosophila willistoni]
          Length = 1381

 Score = 1091 bits (2821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/1278 (46%), Positives = 807/1278 (63%), Gaps = 61/1278 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            + NP    L K  L   ++ K    A K  KCP C   NG VKK   +L I+HD  K   
Sbjct: 127  LHNPNFSYLGKKALHAQMLAK----AKKVTKCPHCAAPNGGVKKGPGLLKILHDPYKGRK 182

Query: 58   ----VTESLQEFASAITHTKESKAAV-NVATYI-LNPVNVLFLFKRMTDTDCEVLYLSER 111
                   +L+E   +    ++    + N +T   L P+ VL LF+++   D  +L +  R
Sbjct: 183  VDAIYKNTLEEMLRSTELNRDLNLTLSNYSTAEELTPLMVLDLFEQIPQKDVPLLGMCSR 242

Query: 112  ---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               P+ LI+T + VPP  IRPSV+ D  + + E+D+T +   I+  N  +Q+ +      
Sbjct: 243  GAHPKHLIVTRVFVPPACIRPSVLSDVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKI 302

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                  W+ LQ+ VA Y +S++ G+P +M   + + G VQRLKGKQGRFRGNLSGKRV++
Sbjct: 303  ELIHEDWDFLQLHVALYFHSEISGIPLNMAPKKTMRGIVQRLKGKQGRFRGNLSGKRVDF 362

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY 287
            +GRTVISPDPNL I +V +P+R+ARILTYPERV+  NI  ++Q ++NGP  +PGA  ++ 
Sbjct: 363  SGRTVISPDPNLMINQVGVPVRVARILTYPERVNPANIRHMKQLVRNGPSLHPGANYVQQ 422

Query: 288  PDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
               + +  + YG  R ++A ELK G IV+RHL D D+VLFNRQPSLH+MSIMCHRA++ P
Sbjct: 423  RGSSFKKYLAYGN-REKVAQELKCGDIVERHLRDDDIVLFNRQPSLHKMSIMCHRAKVQP 481

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE  C PYNADFDGDEMN+H+PQTEEAR EA++LMG Q+NL TPKNGEIL+A+T
Sbjct: 482  QRTFRFNECTCTPYNADFDGDEMNLHLPQTEEARAEAIILMGNQSNLVTPKNGEILIAAT 541

Query: 406  QDFLTSSFLITRKDTFYDRA-AFSLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS 462
            QDF+T  +L+T+K+ F  +  A  L  C++   D   R+ +P PAILKP  LWTGKQ+FS
Sbjct: 542  QDFITGGYLLTQKEVFLTKEEAMQLAACFLSNDDSTMRIQMPPPAILKPRRLWTGKQIFS 601

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            +L+RP+++  + +N+  K + Y+  L             +C ND +V+ RNSEL+ G + 
Sbjct: 602  LLMRPNSDSPILLNMVCKGRNYAGNL------------DLCNNDSWVHIRNSELMCGVMD 649

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            KATLG+G K  ++ +LLRD+G    +  M RLA++++ +I N GFS GI DV P K+L  
Sbjct: 650  KATLGSGTKQCIFYLLLRDFGEAFATKAMWRLARIASFFIQNRGFSFGISDVTPSKKLLQ 709

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K  L+   Y  CN  I +   G LQ +PGC   +TLEAV+   L+ IRE A K C   L
Sbjct: 710  HKQVLLDRGYAKCNEYIDKLKAGTLQCQPGCSPDETLEAVMLRELSGIREQAAKTCFAEL 769

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NS LIM+  GSKGS INISQM+ACVGQQ++ G+R PNGF DR+LPHF + +  PAA+
Sbjct: 770  HPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFEDRALPHFDKHSAIPAAR 829

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFV NSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+K LEDL + YD +VR
Sbjct: 830  GFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVR 889

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            NA   +V  +YG DG+DP +ME ++ +P++       ++A  P   Q+ LS  ++   VE
Sbjct: 890  NAINEMVDTIYGGDGLDPVSMETRN-KPVDLVHQYDNLRAQKPRGEQKPLSSTEILSEVE 948

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              L           F  +   F       L+   K +E  G   K     ++ H+   ++
Sbjct: 949  TILK-------QPEFAEARSDFKADVNKHLNSVAKRIE--GIHKKYLAHGDLCHQIEAVS 999

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
             +QL  +++    RY     E GTA+GAI AQSIGEPGTQMTLKTFHFAGVASMNITQGV
Sbjct: 1000 GEQLLEYLRRINERYNRAVSEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGV 1059

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRI EIIN  K ISTPIITAEL  N +   AR VK RIEKT LG+++  +++V  +    
Sbjct: 1060 PRIVEIINATKTISTPIITAELRNNTSMEYARQVKARIEKTTLGELSSYVEVVCRAFSCH 1119

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK--- 1059
            +VI +DM  I+   L IN D +  SI+++ ++++K   ++V   +   I   V+ ++   
Sbjct: 1120 LVIGIDMARIKVLGLHINLDTIVASILKS-RLRIKPNQVEVAS-KSSRIIVRVEATRTAT 1177

Query: 1060 IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVM 1119
            I+ EL  L   +  V+V G+  + R VIA        V +  +   Y+L +EG GL+ V+
Sbjct: 1178 INAELSRLAISIQNVVVAGLPNINRAVIA--------VDDTVQPHTYKLCIEGYGLREVI 1229

Query: 1120 GAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTF 1179
               GI G +T+SN+I EV QTLGIEAAR  I+ EI + M+ HGMS+D RH+MLLA  MT 
Sbjct: 1230 ATYGIIGKRTRSNNICEVFQTLGIEAARTIIMSEITDVMEGHGMSVDSRHIMLLASQMTA 1289

Query: 1180 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLG 1239
            RGEVLGITR G+ KM +SV  LASFEKTADHLF+A+  G+ D + GVSE II+G+P  +G
Sbjct: 1290 RGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAVNGVSERIILGMPAGIG 1349

Query: 1240 TGILKIRQRD---AVPPM 1254
            TGI K+ Q      VPP+
Sbjct: 1350 TGIFKLLQHHEDKEVPPI 1367


>gi|258564805|ref|XP_002583147.1| DNA-directed RNA polymerase III largest subunit [Uncinocarpus reesii
            1704]
 gi|237906848|gb|EEP81249.1| DNA-directed RNA polymerase III largest subunit [Uncinocarpus reesii
            1704]
          Length = 1435

 Score = 1091 bits (2821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1302 (45%), Positives = 829/1302 (63%), Gaps = 79/1302 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKVT 59
            MR P ++ LR+  + K I ++C     K   C  C  +NG+VKKA  + L I HD+ +  
Sbjct: 138  MRRPGIDNLRRMQINKRINERCR----KTRTCYTCNAVNGVVKKAGTSALKITHDKFRAF 193

Query: 60   ESL---------------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
             +                Q F  A     + +         LNP+ VL LF+R+++ DCE
Sbjct: 194  NASTSAKKIPPASKLVFDQSFEEAKRSNTDIEKHFKKVQDDLNPLRVLKLFRRISNEDCE 253

Query: 105  VLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP++IRPSV  +G+ S E+D+T +L  I+Q+N +L+  +
Sbjct: 254  LLGLNPKEVRPEMFLWQFIPAPPVSIRPSVGQEGA-STEDDLTAKLGDIVQSNINLKNAI 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
             +       +  W+ +Q+++A YINSDV G+       +P+ G  QRLKGKQGRFRGNLS
Sbjct: 313  NKGAPVQTIIECWDYMQLQIAVYINSDVPGLQ-KADFGKPIRGICQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL+I EVA+P  +A  +TYPERV+ +N EKLR+ I+NG   +PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERIRNGTKVWPG 431

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +     T +V   YG  R  +A +L+ G +V+RHLEDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYLSKRGTTFKVFLKYGNLR-LMADQLEEGDVVERHLEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
              ++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491  FVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++A+ QDF+T+++L++ KD FYDR  F L C YM +   + DLP PA+LKP  LWTGKQ
Sbjct: 551  PIIAAIQDFITAAYLLSSKDNFYDRKTFLLYCGYMLEPGTKFDLPPPAVLKPQMLWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F+V++RP  +  V +NL    + +S      +G        +  +DG++  RNSE++ G
Sbjct: 611  VFNVMMRPSKDSPVLLNLDAACREFSA----PKGTPR----DLDADDGWLCIRNSEIMCG 662

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K+T+G+G KD ++ V+LRD+G    +  MNRL++LSARW+ N GFSIGI DV P   
Sbjct: 663  LMDKSTIGSGKKDSVFYVMLRDFGPRVAAEAMNRLSRLSARWLTNMGFSIGITDVYPGDA 722

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K +++ E Y  C+  I+ +  GKL+   G D  QT+E  I+ ILN++R+ AG+ C+
Sbjct: 723  LLQAKREIVEEAYAQCDEVIQLFKTGKLEKAAGSDEQQTMENQISGILNKVRQQAGEKCI 782

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+Q GSKGS IN++QM+A VGQQ +GG+R  NGF DR+LPHFP+  ++P
Sbjct: 783  AELSKWNSPLIMAQSGSKGSTINVAQMIALVGQQIIGGQRVQNGFQDRTLPHFPKHTRQP 842

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AKGFV NSF+SGL+ +E FFH + GREGL+DTAVKTA+TGYMSRRL+K+LEDLS +YD+
Sbjct: 843  LAKGFVRNSFFSGLTPSELFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLSCRYDD 902

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +MEGK+ +P++FDR     +AT      + L   ++  
Sbjct: 903  TVRNSSANIVQFQYGDDKLDPVDMEGKA-KPVHFDRTFTHAEATTYSKDDQGLPCSEIMS 961

Query: 820  IVEKQLAAYGKESCSEAFLNSLRKFFEGQQ---DKLDKKIKF---VEDIGWDDKSQILEE 873
            +  K L+A   +      L +   + +      D+L+    F   +ED  W  K++ L+ 
Sbjct: 962  LCRKLLSAERSKLNRFDLLGNGLDYMDRSDHGIDQLESNRDFLQSIEDYVW-SKTKQLQP 1020

Query: 874  VT-------------HKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPG 920
            VT               T+ ++ K L  F+ +C ++Y+  +VE G A+GA+GAQSIGEPG
Sbjct: 1021 VTGTDLDTPDGQMAISHTAKLSAKTLTAFVTSCLTKYKKAQVEPGHAVGAVGAQSIGEPG 1080

Query: 921  TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRI 980
            TQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTPIIT EL   ++  AA++VKGR+
Sbjct: 1081 TQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPIITCELVNKEDLRAAQIVKGRV 1140

Query: 981  EKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINA-DIVKESIVQTPKIKLKQQ 1039
            EKT +  +   I+   T  +A I I +D   IQ   L +   DI+  + ++T K + K  
Sbjct: 1141 EKTFIKDIIYYIEEAWTGSVAYINIKIDFSAIQALQLELTLRDIL--NAIKTHK-RFKSD 1197

Query: 1040 HIKVLDF-RKLEIFPPVDKSKIHFELYSLKNVL---PMVIVKGIKTVERVVIAEKEKEKR 1095
             +K   F   + IF  VD++       + +      P + +K +K     ++   +  + 
Sbjct: 1198 DLKFRSFGSHIHIF--VDQTAAKTLSKTEQTATGSDPYIRLKHLK-----LLGYPQCSRA 1250

Query: 1096 KVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEIN 1155
             ++ +    K  LLVEG GL+A M  +GI G +T++N+I E +  LGIEAAR  I+DEI+
Sbjct: 1251 VIRTDETNTKNTLLVEGYGLRACMTTDGIWGTRTRTNNIMETKDVLGIEAARTTIVDEIS 1310

Query: 1156 ETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAS 1215
            E MK   M ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LASFEKTADHLF+A 
Sbjct: 1311 EVMK--DMRIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAG 1368

Query: 1216 VNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAVPPMLKY 1257
              GR D +EGVSECIIMG  + LGTG ++I     V PM  Y
Sbjct: 1369 GAGRTDLVEGVSECIIMGKSVSLGTGAMEI-----VRPMNFY 1405


>gi|452844664|gb|EME46598.1| hypothetical protein DOTSEDRAFT_70566 [Dothistroma septosporum NZE10]
          Length = 1491

 Score = 1090 bits (2820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/1337 (44%), Positives = 820/1337 (61%), Gaps = 131/1337 (9%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA-VLGIIHDRSKV- 58
            +R P ++ LRK  ++K I  +C     K  +CP C   NG V+K     + + H++  V 
Sbjct: 138  LRRPGLDGLRKDVIIKKISGECR----KVKRCPHCESYNGPVRKVAGHPIKMFHNKYAVY 193

Query: 59   ----TESLQEFASAI----THTKESKAAVNVATYI------LNPVNVLFLFKRMTDTDCE 104
                 +S Q+ A  +    T  + SKA ++V  ++      L P+ VL + K++ + D E
Sbjct: 194  TNSNAKSKQKPADMMAFEKTFEEASKAILDVERHMKRAADDLTPLRVLNILKKVPNVDVE 253

Query: 105  VLYLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQE 160
            +L +      RPE +I T+I  PP+AIRPSV  + + S E+DIT +L  IIQ N  +   
Sbjct: 254  LLGMDPQSGGRPEYMIWTHIPAPPVAIRPSVAQEAA-STEDDITNKLGDIIQINQLMLAA 312

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNL 220
            L    +  K +  WE +QV++A YI+ ++ G+       + + GF QRLKGKQGRFRGNL
Sbjct: 313  LSAGQALGKVMELWEFMQVQIAMYIDGNLPGLGRDSAYGKAMRGFCQRLKGKQGRFRGNL 372

Query: 221  SGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYP 280
            SGKRV+++GRTVISPDPNL I EVA+P R+A  +TYPERV+ HN EKL+ CI+ G   +P
Sbjct: 373  SGKRVDFSGRTVISPDPNLAIDEVAVPQRVAVNMTYPERVTKHNFEKLKACIRRGDKVHP 432

Query: 281  GARMIRYPDGTARV------LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRM 334
            GA  I       R+      L G   +++A +L+ G  V+RHLEDGD+VLFNRQPSLH++
Sbjct: 433  GANYIVKGRDKRRIVLRMVGLKGDL-HKVADQLEIGDTVERHLEDGDIVLFNRQPSLHKL 491

Query: 335  SIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCT 394
            SI+ HRA+I PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEA  LMGV++NL T
Sbjct: 492  SILSHRAKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEATELMGVKHNLAT 551

Query: 395  PKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVD----------LP 444
            PKNG  ++A+ QDF+T ++LI++KD F+ R  F+ +  +M + ++  D          +P
Sbjct: 552  PKNGTPIIAAIQDFITGAYLISQKDLFFSRRQFTHVVSFMYNALEVTDPYTGKKYPIEIP 611

Query: 445  TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
             PAI KP  LWTGKQ++++L++PH +  V VNL  K K ++      + D+      M  
Sbjct: 612  PPAIWKPQTLWTGKQIWNLLMKPHRDYPVNVNLEAKLKQFAPPSRPGDADD------MVD 665

Query: 505  NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            +D ++  RNSE + G   KAT+G+G K  ++ V++RD+G    +  M RLAKLSARW+G 
Sbjct: 666  SDSYLVIRNSETMCGAFDKATIGDGKKTSVFYVIMRDFGPDYAAAAMTRLAKLSARWLGE 725

Query: 565  HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
             GFSIGI DV P  +L+ +K +LI   Y+ C+  I ++ +GKL+  PGCD  QT+E  ++
Sbjct: 726  RGFSIGISDVYPSDKLNARKQELIDTAYKACDEVIDKFKKGKLERSPGCDEEQTMEITLS 785

Query: 625  DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
             IL+++R     AC   L   N+P+ M++CGSKGS IN+SQMVA VGQQ +GG+R   GF
Sbjct: 786  GILSKVRAQCADACFAELSKFNAPMTMAKCGSKGSNINVSQMVASVGQQIIGGQRVLEGF 845

Query: 685  IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
             DR+LPHFP+ +++P AKGFVA+SF+SGL+ TEF FH M GREGLVDTAVKTA+TGYMSR
Sbjct: 846  QDRTLPHFPKASRDPLAKGFVADSFFSGLTPTEFIFHAMSGREGLVDTAVKTAETGYMSR 905

Query: 745  RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATC 804
            RL+K+LEDLS QYD +VRN+   +VQ  +GDDG+DP +MEG S +P+NF+R  M    + 
Sbjct: 906  RLMKSLEDLSAQYDLTVRNSSSGVVQMKFGDDGLDPVDMEG-SAKPVNFERTWMHAITST 964

Query: 805  PPAGQRYLSPQQVSEI-----------------------------VEKQLAAYGKESCSE 835
                +R L+  ++ E+                             VEK L    +   S 
Sbjct: 965  WNNSERTLTMAEILELVNTTLDAERVKLIRVSEDGKRLEYTYDWEVEKNLKLVDQSEYSR 1024

Query: 836  AFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFS 895
             FL+ +  F  G+ DK+              K+Q   E +     IT   L+ F+Q C  
Sbjct: 1025 TFLDDIAGFIVGKADKM-------------VKNQAKLEGSQDIFKITRSALDRFLQLCLR 1071

Query: 896  RYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRI 955
            +Y   + EAG A+GA+GA SIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K I
Sbjct: 1072 KYEKSKTEAGHAVGAVGAHSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKVI 1131

Query: 956  STPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDA 1015
            STP+I   L+    + A R VK  IEKT LG +   I+ V       I + ++ E I++ 
Sbjct: 1132 STPVINCALDSKYVDMAGRFVKALIEKTYLGDIVDYIEDVWHRGGCYINMRVNWEQIENL 1191

Query: 1016 HLCINADIVKESIVQTPKIK--------LKQQHIKVLDFRKLEIFPP------------- 1054
             L I+   + ++I +T   K        +   HI+V       I PP             
Sbjct: 1192 GLRISMWQLIDAIDRTKGFKAMGASAQAIGHHHIRV------HIIPPDSGSRARGRFAGK 1245

Query: 1055 -----VDKSKIHF-ELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRL 1108
                  D S++ F +L+SLK  LP V+VKG     R +I + +K     K+   K+   +
Sbjct: 1246 GKADASDGSEVMFMQLHSLKRRLPSVVVKGYPEAARAIIKKDDK-----KDETGKEPISV 1300

Query: 1109 LVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKR 1168
            LVEG GL+A M  EG++G KTKSN++ E++  LGIEAAR  IIDEI+  M   GM ID R
Sbjct: 1301 LVEGYGLKACMTTEGVNGYKTKSNNVMEMRDVLGIEAARKTIIDEISSVMG--GMDIDPR 1358

Query: 1169 HMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSE 1228
            HM LLAD+MT++GEVLGITRFG+ KM  SVL LASFEKT DHLF A+   + D IEGVSE
Sbjct: 1359 HMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTPDHLFEAAAKMKKDDIEGVSE 1418

Query: 1229 CIIMGIPMPLGTGILKI 1245
            CIIMG  M +GTG +K+
Sbjct: 1419 CIIMGQSMGVGTGAMKV 1435


>gi|212538083|ref|XP_002149197.1| DNA-directed RNA polymerase III largest subunit, putative
            [Talaromyces marneffei ATCC 18224]
 gi|210068939|gb|EEA23030.1| DNA-directed RNA polymerase III largest subunit, putative
            [Talaromyces marneffei ATCC 18224]
          Length = 1439

 Score = 1090 bits (2820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/1305 (44%), Positives = 828/1305 (63%), Gaps = 95/1305 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDR---- 55
            MR P+++ LR+  + K +V++C     K   CPRCG +NG+VKKA  A L I+H++    
Sbjct: 136  MRRPRLDNLRRLQIAKRVVERCK----KTRDCPRCGAVNGVVKKAGTAALKIVHEKFRHF 191

Query: 56   -----SKVTESLQE--FASAITHTKESKAAVN----VATYILNPVNVLFLFKRMTDTDCE 104
                 +K    + +  F +++   + S   V+     A   L+ + V+ LFK++T+ DCE
Sbjct: 192  NQSTSAKKVPPISKIVFDNSLAEARASNPDVDRFYKKAQDDLHALRVMNLFKKITNADCE 251

Query: 105  VLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L     RPE  +   I  PP  IRPSV  DG+ SNE+D+T +L  I+Q+N +L+  L
Sbjct: 252  LLGLDPTEVRPETFLWQYIPAPPNCIRPSVSQDGA-SNEDDLTAKLGDIVQSNITLRNNL 310

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
             +       +  W+ + +++A YIN DV G+    +  +P    V RLKGKQGRFRGNLS
Sbjct: 311  RKGAPVPTLMECWDYMTLQIAIYINGDVPGL--KGEAGKPTRSLVSRLKGKQGRFRGNLS 368

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL+I EVA+P  +A+ +TYPE V+ +N+E L++ ++NG +K+PG
Sbjct: 369  GKRVDFSGRTVISPDPNLRIDEVAVPELVAKNMTYPEIVTRYNLEYLQKLVRNGINKWPG 428

Query: 282  ARMIRYPDGTARVLY---GKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMC 338
            A+ +   D    +      K  + ++ +L+ G +V+RHL DGD+ L+NRQPSLH++SI+ 
Sbjct: 429  AKKVIKKDSGLTISLKHSAKSLDTISKQLQIGDLVERHLVDGDIALYNRQPSLHKLSILS 488

Query: 339  HRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNG 398
            H  ++ P+RT R NE VCNPYNADFDGDEMN+H+PQTEEAR+EA+ LMGV+NNL TPKNG
Sbjct: 489  HFVKVRPYRTFRMNECVCNPYNADFDGDEMNLHIPQTEEARSEAMELMGVKNNLVTPKNG 548

Query: 399  EILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGK 458
            E ++ + QDF++++++++ KD F+DR +F+ +C YM     R DLP PAILKP  +WTGK
Sbjct: 549  EPIIGAIQDFISAAYVLSSKDNFFDRRSFTQICLYMLGPETRFDLPPPAILKPQMMWTGK 608

Query: 459  QLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELIS 518
            Q+F++L+RP+ +  V VN+    + +       +  ++ + + + PNDG++  RNSE++ 
Sbjct: 609  QVFNILMRPNKDDPVKVNIDAACREF-------KAPKDGQPKDLDPNDGWLVIRNSEIMC 661

Query: 519  GQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKK 578
            G + K+T+G+G KD ++ ++LRD+G  A +  MNRL+KL ARW  N GFSIGI DV P +
Sbjct: 662  GVMDKSTIGSGKKDNVFYIMLRDFGPPAAAEGMNRLSKLCARWFTNVGFSIGITDVYPSE 721

Query: 579  ELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKAC 638
             L   K +L+   Y  C+  I +Y  GKL+  PGCD  QT+E+ ++ IL+++R+ AG+ C
Sbjct: 722  RLVQTKNELVERAYAACDEVIAQYKAGKLEKLPGCDELQTMESQVSGILSKVRQQAGEEC 781

Query: 639  MGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKE 698
            +  L   N+PLIM+  GSKGS IN+SQMVA VGQQ +   R  +GF DR+LPHFP+ A+ 
Sbjct: 782  IKQLSKYNAPLIMATSGSKGSSINVSQMVAVVGQQIISSERVQDGFQDRTLPHFPKNARH 841

Query: 699  PAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYD 758
            P +KGFV NSF+S LS TEFFFH M GREGL+DTAVKTA+TGYMSRRL+K+LEDLS +YD
Sbjct: 842  PPSKGFVRNSFFSSLSPTEFFFHAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSAKYD 901

Query: 759  NSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVS 818
             ++R +   IVQF YG D +DP +MEGK+ +P++FDR      A      +R L P ++ 
Sbjct: 902  GTIRTSSASIVQFSYGGDDLDPVDMEGKA-KPVHFDRTYNHAMAVTHNNNERGLQPSEIR 960

Query: 819  EIVEKQLAAYGKESCSEAF-----------------LNSLRKFFEGQQDKLDKKIKFVE- 860
             I E+ L+   K    +                   L S R F +  Q+ ++KK   +E 
Sbjct: 961  AITEELLSEERKRYVRKGLFGEDLPYKDDSDYGTDQLESARAFLDSIQEHIEKKAVAMEK 1020

Query: 861  --DIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGE 918
              D    D+   +         ++E  L  FI++C  +Y   ++E G A+GA+GAQSIGE
Sbjct: 1021 AMDSALSDQEARM--ALDHVGKLSEGSLRYFIKSCLFKYEKAKIEPGHAVGAVGAQSIGE 1078

Query: 919  PGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKG 978
            PGTQMTLKTFHFAGV ++ +TQGVPRIKEIIN +K ISTP+IT  L      +AAR+ KG
Sbjct: 1079 PGTQMTLKTFHFAGVGNLALTQGVPRIKEIINASKEISTPVITCHLAIPHELHAARIAKG 1138

Query: 979  RIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIK--- 1035
            RIEKT L  +   I+   T +   I + L+ +TI++  L ++   +K++I    + K   
Sbjct: 1139 RIEKTFLRDIIHYIRESWTDKEGYITVKLNWDTIENLQLELSLRQIKDAITSHRRFKGSD 1198

Query: 1036 ----LKQQHIKVLDFRKLEIFPP----VDKSKI-------HFELYSLKNVLPMVIVKGIK 1080
                + + HIK+    ++++ P     + K+ I       +  L  LK +LP + V G  
Sbjct: 1199 LTVDVLRSHIKI----RVDMDPSSKAGLSKTDIAATSADPYLRLKHLKRMLPDIQVLGHP 1254

Query: 1081 TVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQT 1140
               R +I            + E+   +LLVEG GL+A M  +G++G +TK+N++ E++  
Sbjct: 1255 QARRAII------------HSERGLNKLLVEGYGLRACMNTDGVEGVRTKTNNVMEMRAV 1302

Query: 1141 LGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLM 1200
            LGIEAAR  II+E+ E MK   M ID RHM LLAD+MT  GEVLGITRFG+ KM  SVL 
Sbjct: 1303 LGIEAARETIINEMGEVMK--DMDIDPRHMHLLADIMTTNGEVLGITRFGMAKMRDSVLQ 1360

Query: 1201 LASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            LASFEKTADHLF+A   GR DR+EGVSECIIMG  + LGTG +++
Sbjct: 1361 LASFEKTADHLFDAGGTGRTDRVEGVSECIIMGKTVSLGTGAMEV 1405


>gi|154300910|ref|XP_001550869.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
          Length = 1468

 Score = 1089 bits (2817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1339 (44%), Positives = 830/1339 (61%), Gaps = 112/1339 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            +R P ++ L++T + K I ++C     KA +CP C   NG ++K ++ + + HD+     
Sbjct: 133  LRKPGIDNLKRTQICKKINEQCR----KASQCPHCNATNGQIRK-ISPVRLAHDKYTKYN 187

Query: 58   ------------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
                        + E  + F  A  H  E +  V      L+P+ VL LFK +T +DCE+
Sbjct: 188  KSTAAKKVVPPGMAEYQKSFEEAKKHNTELEKHVKKVYEDLHPLRVLNLFKLITPSDCEL 247

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L ++    RPE  +   +  PPI IRPSV  DG  SNE+DIT +L  I+   + L+  L 
Sbjct: 248  LGINPAEGRPEMFLWQFVPAPPICIRPSVQQDGG-SNEDDITTKLAEIVSMASLLRAALH 306

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            +  +    +  W+ LQ+++A Y+NSDV G+       + + GF QRLKGKQGRFRGNLSG
Sbjct: 307  KGQAVQTIMEQWDFLQLQIAMYVNSDVPGLQ-QPGFGKAIRGFCQRLKGKQGRFRGNLSG 365

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I EVA+PI +A+ LTYPERV   NIEKLRQC+ NGP+ +PGA
Sbjct: 366  KRVDFSGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRQCVINGPNVHPGA 425

Query: 283  RMIRYPDGTARVLYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
            + I   D   ++   KF  R+  A  LK G +V+RHLEDGD+VLFNRQPSLH++SIM H 
Sbjct: 426  QQIIKKDSNHKISL-KFAKRDNEAKFLKIGDVVERHLEDGDIVLFNRQPSLHKLSIMSHY 484

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
            A+I PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEA+ LMGV+NNL TPKNGE 
Sbjct: 485  AKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAINLMGVKNNLSTPKNGEP 544

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++++TQDF+T+++L++ K+ F+DR  F+ +C YM D    + LP PAILKP  LWTGKQ+
Sbjct: 545  IISATQDFITAAYLLSNKENFFDRKTFTNICMYMVDANLHLQLPDPAILKPQALWTGKQV 604

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            FSVL+RP+    + VN+  K + +   ++      +     M  NDG++  RNSE++ G 
Sbjct: 605  FSVLMRPNKQDNILVNVDAKCRDFVPSMVPKGFAND-----MEANDGWLVIRNSEVMCGL 659

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + K+T+G+G KD ++ V+LRDYG  A    MNRL+KLSAR++ N GFSIGI DV P  EL
Sbjct: 660  MDKSTVGSGKKDSIFYVILRDYGPDAAVVAMNRLSKLSARYLTNMGFSIGISDVYPSAEL 719

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
            +  K +LI+  Y  C   I+ +    L+   G    +TLEA ++  L+++R  AGK C+ 
Sbjct: 720  NKSKARLIAAAYVECEQLIESFKNNTLEKSTGLSMEETLEAKLSGKLSQVRGAAGKECLR 779

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
            +L   +SPL+M+  GSKGS IN++QMVA VGQQ +GG R   GF DR+LPHFP+ +K+P 
Sbjct: 780  TLYASSSPLVMANSGSKGSAINVAQMVALVGQQIIGGSRVQEGFQDRTLPHFPKHSKQPP 839

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            AKGFVANSF++GL+  EF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD++
Sbjct: 840  AKGFVANSFFTGLTPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDT 899

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEI 820
            VR +GG IVQF +G DG+DP +MEG +  P+NF R   + +       +R L P +V++ 
Sbjct: 900  VRTSGGGIVQFQFGADGLDPLDMEG-NAVPVNFKRTWTQAETLTWNNEERSLLPYEVTKQ 958

Query: 821  VEKQLAA-----------------------YG--KESCSEAFLNSLRKFFEGQQDKLDKK 855
              + LA                        YG  +      FL ++ KF  G++     +
Sbjct: 959  CAEHLATFKAKFSRFGLRNGEPLSYDDASDYGVDEHDGGREFLAAVNKFI-GEKASHMGR 1017

Query: 856  IK-------FVED-------IGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKR 901
            ++       FV+D          +D+ +   +  ++ + ++E  L+ F + C  +Y   +
Sbjct: 1018 VRTKAGLHDFVDDPEVTGILYNEEDEREESRDYVNQVAKVSETTLKKFCELCLEKYSRAK 1077

Query: 902  VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIIT 961
            VE G A+GA+GAQSIGEPGTQMTLKTFHFAGVA MN+T GVPRIKEIIN +K I+TP + 
Sbjct: 1078 VEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMNLTAGVPRIKEIINASKTIATPFVK 1137

Query: 962  AELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINA 1021
              L  +     AR+VK R+EKT L +V    + + +++ A I +A+D E + +  + +  
Sbjct: 1138 CPLLNSKELEVARLVKARMEKTYLHEVLHFAEDMWSAKSAIICLAVDTEYLVNRQIEVTV 1197

Query: 1022 DIVKESIVQTPKIKLKQQHIKVLDFRKLEIF---------------------PPVDK--S 1058
            + +  +I++  K+K++ + + V   +   IF                     P +D+  S
Sbjct: 1198 ENIAHTILKNKKLKVRSEDLHV---KGNCIFINVTHDGSVPTTARGAAAKGKPSLDEGGS 1254

Query: 1059 KIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
             +   ++ LK  +P + + G     R +I   E     V E      Y ++VEG GL+A 
Sbjct: 1255 DLLLRVHHLKRAVPELAISGYPEATRAIINTSED---AVPE------YTVVVEGYGLRAC 1305

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            +G EG+DG K KSN + E++  LGIEAAR  I +EI   M    M ID RHM LLAD+MT
Sbjct: 1306 IGTEGVDGTKVKSNSVMEMRDVLGIEAARSTIANEIATVMA--DMDIDPRHMQLLADVMT 1363

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
            ++GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + DRIEGVSECIIMG  M +
Sbjct: 1364 YKGEVLGITRFGLSKMRDSVLQLASFEKTPDHLFDAAAGMKTDRIEGVSECIIMGQTMGV 1423

Query: 1239 GTGILK-IRQRDAVPPMLK 1256
            GTG  K +R  D  P  LK
Sbjct: 1424 GTGAFKVVRALDLTPEDLK 1442


>gi|303315581|ref|XP_003067798.1| DNA-directed RNA polymerase III largest subunit, putative
            [Coccidioides posadasii C735 delta SOWgp]
 gi|240107468|gb|EER25653.1| DNA-directed RNA polymerase III largest subunit, putative
            [Coccidioides posadasii C735 delta SOWgp]
          Length = 1444

 Score = 1088 bits (2814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1302 (45%), Positives = 812/1302 (62%), Gaps = 90/1302 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKVT 59
            MR   ++ LR+  + K I  +C     K   C  C  +NG+VKKA  + L I HD+ +  
Sbjct: 138  MRRQGIDNLRRMQINKRINDRCR----KTRTCYVCHAVNGVVKKAGTSALKITHDKFRAF 193

Query: 60   ESLQE-----------FASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCE 104
             +              F  +    K S   +          LNP+ VL LF+R++D DCE
Sbjct: 194  NASTSAKKVPPPSKLVFDRSFEEAKRSNTDIEKHFKKVQDDLNPLRVLKLFRRISDEDCE 253

Query: 105  VLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP++IRPSV  +G+ S E+D+T +L  I+Q+N +L+  +
Sbjct: 254  LLGLNPEEVRPEMFLWQYIPAPPVSIRPSVGQEGA-STEDDLTAKLGDIVQSNINLKNAI 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
             +       +  W+ +Q+++A YINSDV G+       +P+ G  QRLKGKQGRFRGNLS
Sbjct: 313  NKGAPVQTIIECWDYMQLQIAVYINSDVPGLQ-KADFGKPIRGICQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL+I EVA+P  +A  +TYPERV+ +N EKLR+ ++NG   +PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPG 431

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +     T +V   YG   N +A +L+ G +V+RHLEDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYLSKRGTTFKVFLKYGNL-NLMADQLEEGDVVERHLEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
              ++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491  FVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++A+ QDF+T+++L++ KD FYDR +F+ +C YM     + DLP PA+LKP  LWTGKQ
Sbjct: 551  PIIAAIQDFITAAYLLSSKDNFYDRGSFTQICGYMLQPGTKFDLPPPAVLKPQMLWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F+VL+RP     V VNL    + +       +G        + PNDG++  RNSE++ G
Sbjct: 611  VFNVLMRPSKESPVLVNLDAACREFRAP----KGTPR----DLDPNDGWLCIRNSEIMCG 662

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K+T+G+G KD ++ V+LRD+G    +  MNRL++LSARW  N GFSIGI DV P   
Sbjct: 663  VMDKSTIGSGKKDSVFYVMLRDFGPQVAAEAMNRLSRLSARWFTNIGFSIGITDVYPGDS 722

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K +L+ E Y  C+  I+ +  GKL+  PG D  Q +E+ I+ IL+++R+ AG+ C+
Sbjct: 723  LLQAKKQLVEEAYAQCDALIQLFKAGKLEKAPGGDEQQNMESQISGILSKVRQQAGEQCI 782

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN++QM+A VGQQ + G+R  +GF DR+LPHFP+ A++P
Sbjct: 783  AELSKWNSPLIMATSGSKGSTINVAQMIALVGQQIIAGQRVQDGFQDRTLPHFPKYARQP 842

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AKGFV NSF+SGL  +EFFFH + GREGL+DTAVKTA+TGYMSRRL+K+LEDLS +YD+
Sbjct: 843  PAKGFVRNSFFSGLIPSEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLSSRYDD 902

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +ME K+ +P++FDR     + T      R L P +V +
Sbjct: 903  TVRNSSSNIVQFQYGDDKLDPVDMEDKA-KPVHFDRTFTHAETTTYSKEDRGLLPSEVMD 961

Query: 820  IVEKQLAA-YGKESCSEAFLNSLRKFFEGQQ--DKLDKKIKFVEDIGWDDKSQILEEVTH 876
            +  + LA    K    +   NSL          D+L+    F++ I  +D  Q   +  H
Sbjct: 962  LCRQMLAPERAKLDRFDLLGNSLEYTDRSDHGIDQLESNRDFLQSI--EDYIQAKADRLH 1019

Query: 877  KTSG-----------------ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEP 919
              +G                 ++ K L  FI +C ++Y+  +VE G A+GA+GAQSIGEP
Sbjct: 1020 SATGTEADTLEGQMALSHTVKLSAKTLTTFITSCLTKYKKAQVEPGHAVGAVGAQSIGEP 1079

Query: 920  GTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGR 979
            GTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTPIIT EL   ++  AA++VKGR
Sbjct: 1080 GTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPIITCELVNKEDVRAAQIVKGR 1139

Query: 980  IEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHL------CINADIVKESIVQTPK 1033
            +EKT +  +   I+   T  +A I I +D  TIQ   L       +NA I K    ++  
Sbjct: 1140 VEKTFIKDIIYYIEEAWTGSVAYINIKIDFSTIQALQLELTLRDILNA-IKKHKRFRSDD 1198

Query: 1034 IKLKQ--QHIKVL--------DFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVE 1083
            +K +    HI +            K E       S  +  L  LK +LP + V G     
Sbjct: 1199 LKFRSFGSHIHIFVDQATTKTSLTKAE--QAATGSDPYIRLKHLKRLLPTIQVLGHPQCS 1256

Query: 1084 RVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
            R +I   E                LLVEG GL+A M  +GI G +T++N+I E +  LGI
Sbjct: 1257 RAIIRTDETNTTNT----------LLVEGYGLRACMTTDGIFGTRTRTNNIMETKDVLGI 1306

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            EAAR  I+DEI++ MK   M ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LAS
Sbjct: 1307 EAARTTIVDEISDVMK--DMGIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLAS 1364

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            FEKTADHLF+A   GR D +EGVSECII+G  + LGTG +++
Sbjct: 1365 FEKTADHLFDAGGAGRTDLVEGVSECIILGKSVSLGTGAMEM 1406


>gi|406863545|gb|EKD16592.1| DNA-directed RNA polymerase III [Marssonina brunnea f. sp.
            'multigermtubi' MB_m1]
          Length = 1965

 Score = 1086 bits (2809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/1333 (44%), Positives = 825/1333 (61%), Gaps = 115/1333 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKV-- 58
            +R P ++ L +T + K I ++C     KA  CP C  +NG ++K V ++ + HD+ +   
Sbjct: 629  LRKPGIDNLERTRICKKINEQCR----KARTCPYCDAVNGQIRK-VGIVKLAHDKYQAFN 683

Query: 59   ---------TESL----QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
                       SL    + F  A     E +  +  A   LN + VL LFK +T +DCE+
Sbjct: 684  KSTAQKKVPPPSLLTYQKSFEEAKKANPELEKHMKKAMDDLNALRVLNLFKMITPSDCEL 743

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L+    RPE  I   +  PPI IRPSV  + + S E+D+T +L  I+Q ++ ++  L 
Sbjct: 744  LGLNPLEGRPEMFIWQFVPAPPICIRPSVAQENA-STEDDLTTKLGEIVQVSSLIRAALQ 802

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
                    +  W+ LQ  +A Y+NSDV G+       +P+ GF QRLKGKQGRFRGNLSG
Sbjct: 803  RGQPIQTIVEQWDFLQTAIALYVNSDVPGLQDKGN-GKPMRGFCQRLKGKQGRFRGNLSG 861

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++ RTVISPDPNL I +VA+PI +A  +TYPER   +NIEKLR+ ++NGP K+PGA
Sbjct: 862  KRVDFSARTVISPDPNLGIDQVAVPILVAMNMTYPERAQKNNIEKLRRLVRNGPSKHPGA 921

Query: 283  RMIRYPDGTARVLYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
            + I    G+   +  KF  R   A  LK G +V+RHLEDGD++LFNRQPSLH++SIM H 
Sbjct: 922  QQI-IKKGSDHKISLKFARREIEAQHLKIGDVVERHLEDGDIILFNRQPSLHKLSIMSHY 980

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
            A+I PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEA+ LMGV+NNL TPKNGE 
Sbjct: 981  AKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAINLMGVKNNLSTPKNGEP 1040

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++++TQDF+T+++L++ K+ F+DR  F+ +C YM DG   +D+P PAI+KP  LWTGKQ+
Sbjct: 1041 IISATQDFITAAYLLSSKENFFDRKTFTNLCMYMVDGNTHLDVPPPAIIKPQALWTGKQV 1100

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP----NDGFVYFRNSEL 516
            FS L+RP+    V VNL  K + Y              +   CP    NDG++  RNSE+
Sbjct: 1101 FSALMRPNKKSPVKVNLDAKCRDYQ------------FVPGQCPDMDINDGWLVVRNSEV 1148

Query: 517  ISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQP 576
            + G++ K T+G+G KD ++ ++LRD+G       MNRL+K+SAR++ N GFSIGI DV P
Sbjct: 1149 MCGRMDKTTVGSGKKDSIFYIILRDFGPDEAVLAMNRLSKISARYLTNMGFSIGISDVYP 1208

Query: 577  KKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGK 636
             K+L+  K +L+ + Y      I+++  G LQ   GC+  +TLE VI+ +L+++R+ AG+
Sbjct: 1209 SKDLTAAKSRLVLKAYAQSEDLIQQFQNGTLQKSTGCNMEETLENVISGVLSKVRQSAGE 1268

Query: 637  ACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKA 696
             C+ +L   NSPLIM++ GSKGS IN++QMVA VGQQ +GG+R  +GF DR+LPHFP+ A
Sbjct: 1269 YCISTLSKWNSPLIMAKSGSKGSTINVAQMVAVVGQQIIGGKRVQDGFQDRTLPHFPKNA 1328

Query: 697  KEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
            ++P +KGFV NSF++GL  TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS Q
Sbjct: 1329 RQPPSKGFVRNSFFTGLRPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQ 1388

Query: 757  YDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQ 816
            YD++VRN+ G +VQF +G D +DP +MEG S  P++F R     +A       R L P +
Sbjct: 1389 YDDTVRNSSGIVVQFQFGADKLDPVDMEG-SAVPVHFQRTWTHAEALTWNNDDRSLLPYE 1447

Query: 817  VS----EIVEKQLAAYGKES--------------------CSEAFLNSLRKFFEGQQDKL 852
            ++    +++ +Q + Y ++                      +  FL ++ KF +G   +L
Sbjct: 1448 ITARCIDLLAQQKSGYDRQDLFGKPLAYDDDTPINTDEFESAREFLVTITKFVDGLASRL 1507

Query: 853  DKKIKFV--------------EDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYR 898
             K  + V              +D   DD+ +  ++  ++ + ++   L++FI  C S+Y 
Sbjct: 1508 AKARQKVGLHDFKDPPGLGTPQDDSKDDQRK--KDYLNQVAKVSLPTLKMFITLCLSKYA 1565

Query: 899  VKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTP 958
               VE G A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP
Sbjct: 1566 KAHVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKVISTP 1625

Query: 959  IITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLC 1018
            +I+  LE       AR+VK RIEKT +  V + I+ + +++ A++ +++D++ + +  L 
Sbjct: 1626 VISCPLENEREIQVARIVKARIEKTYISDVIRFIEDMWSAKAATLCLSVDLDYLNEMQLG 1685

Query: 1019 INADIVKESIVQTPKIKLKQQHIKV----------------LDFRKLEIFPPVD--KSKI 1060
            I  + + ++I    K+K++   + V                L  R  +    VD   S +
Sbjct: 1686 ITVEDIAQTICMNKKLKIRGTDVTVSHECIFVNVTSESGGNLGARGAKNKAYVDDGSSDV 1745

Query: 1061 HFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMG 1120
               +  LK  LP + + G     R ++   E E            + +LVEG GL+A M 
Sbjct: 1746 LLRVNFLKRTLPTITISGYPDATRAIVQVSEDE----------TVHTVLVEGYGLRACMT 1795

Query: 1121 AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFR 1180
             EG+ G +  SN I EV   LGIEAAR  I  EI   M    M ID RHM LLAD+MT++
Sbjct: 1796 TEGVVGRRVTSNSIMEVNTVLGIEAARSTIATEIGAVMG--DMGIDPRHMQLLADVMTYK 1853

Query: 1181 GEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
            GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + D IEGVSECIIMG  M +GT
Sbjct: 1854 GEVLGITRFGLSKMRDSVLQLASFEKTPDHLFDAAAGMKTDLIEGVSECIIMGQTMSVGT 1913

Query: 1241 GILKIRQRDAVPP 1253
            G  ++ ++  + P
Sbjct: 1914 GAFQVVRKLGLQP 1926


>gi|451993939|gb|EMD86411.1| hypothetical protein COCHEDRAFT_1186563 [Cochliobolus heterostrophus
            C5]
          Length = 1473

 Score = 1084 bits (2804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1333 (44%), Positives = 820/1333 (61%), Gaps = 115/1333 (8%)

Query: 4    PKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA-VLGIIHDRSKV---- 58
            P M+ LRK  + K I++ C     K   CP C  + G V+K     L IIH+R       
Sbjct: 141  PDMDTLRKGAVTKRILEDCR----KKKTCPYCNGLQGTVRKVPGHPLKIIHNRYDAFNRS 196

Query: 59   -----------TESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLY 107
                        E  Q F ++ +   +    +  A   ++P+ VL LFK+++  DCE+L 
Sbjct: 197  TAKTKKAPPGKIEFDQSFETSKSANPDLDKHLKKAVDDMHPLRVLNLFKKISPEDCELLA 256

Query: 108  L---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEA 164
            +     RPE LI   + VPP+A+RPSV+ +G  + E+D+T ++  I   ++ ++  L   
Sbjct: 257  MIPEDARPEMLIWEYMPVPPVALRPSVMQEGG-ATEDDVTNKIGDICHISSIIRAGLARG 315

Query: 165  NSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKR 224
                  +  W+ LQ+++A YINSD  G+     + + + GF QRLKGK GRFR NLSGKR
Sbjct: 316  FPLQILMEQWDFLQLQIAMYINSDAPGLK-QQGLQKTMRGFSQRLKGKGGRFRQNLSGKR 374

Query: 225  VEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARM 284
            V+++GRTVI PDPNL I EVA+P R+A+ LTYPE+V+ +NI+KLR+ ++NG +KYPGA  
Sbjct: 375  VDFSGRTVIGPDPNLSIDEVAVPERIAKNLTYPEKVTRYNIDKLRRLVRNGSNKYPGANY 434

Query: 285  IRYPDGTAR-------VLYGKFRNQ------LAVELKSGCIVDRHLEDGDVVLFNRQPSL 331
            I    G  +       +   +F  +       +  LK G IV+RH+EDGD+VLFNRQPSL
Sbjct: 435  ILDDQGPNKDRGKISLIALSRFDTKGERLEGASKRLKIGDIVERHIEDGDIVLFNRQPSL 494

Query: 332  HRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNN 391
            H++SI+ HRA++ PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEA  LMGV+ N
Sbjct: 495  HKLSILSHRAKVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEATELMGVKYN 554

Query: 392  LCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVD--------- 442
            L TPKNG  ++A+ QDF+T+++L++ K+ F+DR  F  +  YM +G    D         
Sbjct: 555  LATPKNGTPIIAAIQDFITAAYLLSNKNNFFDRRTFCQIVNYMFNGEGAFDPDTGKRHPI 614

Query: 443  -LPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET 501
             +P P +LKP  LWTGKQ+F++L+RP+   RV VNL    K + N   +     E     
Sbjct: 615  EIPPPVVLKPQALWTGKQVFNLLMRPYKKCRVLVNLEAACKQFKNTPDQPPDLNE----- 669

Query: 502  MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA-HATSGCMNRLAKLSAR 560
               ND ++  RNSE++ G + KAT+G+G KD ++ V++RD+G  HA  G MNRL+KLSAR
Sbjct: 670  ---NDAYLVIRNSEVMCGVMDKATVGDGKKDSVFYVMMRDFGPDHAVQG-MNRLSKLSAR 725

Query: 561  WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
            W+ N+GFS+GI DV P ++L+ KK  L+ E Y  C+  IK++ EGKLQ  PGCD  QT+E
Sbjct: 726  WLSNNGFSLGISDVTPGEKLNKKKQDLVQEAYAKCDKLIKDFKEGKLQRDPGCDEEQTME 785

Query: 621  AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
              I  IL+ +R+ AG  C   L   NSPL+M++CGSKGS IN+SQMVA VGQQ +GG R 
Sbjct: 786  NRIGGILSGVRQAAGDICFEELSRWNSPLLMAKCGSKGSNINVSQMVASVGQQMIGGARV 845

Query: 681  PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
             +GF  R+LPHFP+ A++PA+KGFV+NSF+SGL+ +EF FH M GREGLVDTAVKTA+TG
Sbjct: 846  ADGFHHRTLPHFPKAARQPASKGFVSNSFFSGLTPSEFIFHAMSGREGLVDTAVKTAETG 905

Query: 741  YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
            YMSRRL+K+LEDLS QYD++VRN+ G +VQF YGDD +DP +MEGK+ +P++FDR     
Sbjct: 906  YMSRRLMKSLEDLSAQYDDTVRNSSGTVVQFQYGDDNLDPVDMEGKA-KPVHFDRTFSHA 964

Query: 801  KATCPPAGQRYLSPQQVSEIVEKQLAA-------YGKESCSEAFL-----------NSLR 842
              +     +  L+PQ+V E  E +L A       Y  +  ++               S+R
Sbjct: 965  VTSTWDNSESSLTPQEVREYTEARLNAQRNKYPRYALDGVTQLEYRDQTDRGIDQKESMR 1024

Query: 843  KFFEGQQDKLDKK----------IKFVEDIGWDDKSQILEEVTHKT-----SGITEKQLE 887
             F +  QD + KK          +  V+     DK Q   +    +     + I+E+ L+
Sbjct: 1025 DFLDTVQDYVFKKAQKLETTLAYLGIVQPNDRKDKKQSAADAEKYSLADGIAKISERALD 1084

Query: 888  VFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKE 947
             FI  C ++Y   RV+ G A+GAIGAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKE
Sbjct: 1085 TFITLCLTKYHRSRVQPGHAVGAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKE 1144

Query: 948  IINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIAL 1007
            IIN +  ISTP+I  EL    +E+AAR+VK R+EKT L  V   ++ V     A I + +
Sbjct: 1145 IINASSTISTPVIACELSNKISESAARIVKARVEKTYLRDVISYVEDVWHPNGAYIAMRI 1204

Query: 1008 DMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL---DFRKLEIFP-------PVDK 1057
            D +TI    + +    +  +I     +K  +    V       ++E+         PV  
Sbjct: 1205 DWDTINKLFVDVQPYEIAAAINAHKPLKWGKAGANVRISSSIIRVEVPDPNAAKKRPVKT 1264

Query: 1058 SKIHFELY----SLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGE-KKKYRLLVEG 1112
            ++ H E +     +K+++P V++KG     R +I      K++   N +   + +LLVEG
Sbjct: 1265 TRNHKEYFERVQQVKSLIPDVVIKGYPDCSRAII------KKESSPNAQGHYECQLLVEG 1318

Query: 1113 TGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMML 1172
             GLQ  M   GI+   TKSNH+ EV+  LGIEAAR  I+ EI + M    M ID RHM L
Sbjct: 1319 YGLQDCMTTPGIEPYNTKSNHVMEVKTVLGIEAARATIVREIGDVMG--NMDIDPRHMQL 1376

Query: 1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232
            LAD+MTF+GEV GITRFG+QK   SVL LASFEKT DHLF A+  G+ D I+GVSECIIM
Sbjct: 1377 LADVMTFKGEVFGITRFGLQKTRDSVLQLASFEKTPDHLFEAAARGKTDTIDGVSECIIM 1436

Query: 1233 GIPMPLGTGILKI 1245
            G  + LGTG +++
Sbjct: 1437 GQSVKLGTGAMQV 1449


>gi|321458572|gb|EFX69638.1| hypothetical protein DAPPUDRAFT_62003 [Daphnia pulex]
          Length = 1238

 Score = 1084 bits (2803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/1232 (47%), Positives = 798/1232 (64%), Gaps = 45/1232 (3%)

Query: 31   KCPRCGYINGMVKKAVAVLGIIHDRSK------VTESLQEFASAITHTKESKAAVNVATY 84
            +CP C  +NG+VKK   +L I H++ +      +   L  + +A+   KE +  ++ A  
Sbjct: 8    RCPHCDELNGVVKKC-GMLKISHEKFRNAKKPIIEAELVAYDNAVQFNKEIEPMLSSALI 66

Query: 85   -ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMD-GSQSN 139
             +LNP+ V+ LF+R+ D D + + ++     P+ +I+T + VPP  IRPSV+ D  S +N
Sbjct: 67   KMLNPIEVMHLFERIPDEDVQYILMNSEHGHPKDMILTRLPVPPACIRPSVMSDLKSGTN 126

Query: 140  ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA 199
            E+D+T +L  I+  N  + +  +    +   L  W  LQ + A YINS++ G+PF MQ  
Sbjct: 127  EDDLTMKLTEIVFLNDVIVKHRLSGAKSQIILEDWYFLQFQCALYINSELSGIPFDMQPK 186

Query: 200  RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
            +P  G VQRLKGKQGRFRGNLSGKRV+++GRTVISPDPNL+I +V +P  +A+ILTYP  
Sbjct: 187  KPSRGLVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVGVPEMVAKILTYPTL 246

Query: 260  VSDHNIEKLRQCIQNGPDKYPGARMIR--YPDGTARVLYGKFRNQLAVELKSGCIVDRHL 317
            V++ NIE +R+ ++NGPD +PGA  ++      T  + +G  R  LA  LK G +++RH+
Sbjct: 247  VNEANIELMRKLVRNGPDIHPGAIFLKKKVSKLTISLKHGN-RETLARNLKRGDVIERHM 305

Query: 318  EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
             D D+VLFNRQPSLH++SIMCHRA+I+P RT RFNE VC PYNADFDGDEM +H PQTEE
Sbjct: 306  MDEDIVLFNRQPSLHKLSIMCHRAKILPHRTFRFNECVCTPYNADFDGDEMTLHFPQTEE 365

Query: 378  ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--G 435
            AR EAL+LM  ++NL TP+NGE+L+A+ QDF+T ++L+T KD F+DRA    M   M  G
Sbjct: 366  ARAEALILMTNKSNLVTPRNGELLIAAIQDFITGAYLLTLKDAFFDRAKTCQMVASMLAG 425

Query: 436  DGMDRV-DLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
            D ++ V  LP P I KP  LW+GKQ+FS+++RP+   R+ VNL  K K YS K       
Sbjct: 426  DEVNMVIKLPPPCIQKPAALWSGKQIFSLILRPNPGDRIKVNLRTKGKEYSKK------- 478

Query: 495  EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                 E  C NDGF+  RNSE+++G + K+T+G+G+K  ++ VLLRDYG       M +L
Sbjct: 479  ----NEEFCVNDGFLLVRNSEVLAGCVDKSTIGSGSKINIFYVLLRDYGEDFAIQAMWKL 534

Query: 555  AKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
             ++++ ++ N GFSIGI DV P K L  +K KL+   +  C+  I+  + G+L   PGC 
Sbjct: 535  CRVASYYMMNRGFSIGIGDVTPGKTLLKEKQKLLDSGFSKCDEYIRLLSIGQLPCLPGCK 594

Query: 615  AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
              ++LE+ IT  L+ IR+ AG+ C   L   NSPL+MS+ GSKGS INISQM+ACVGQQ+
Sbjct: 595  KEESLESKITKELSGIRDQAGEVCKKKLHPSNSPLVMSKSGSKGSYINISQMIACVGQQA 654

Query: 675  VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
            + G+R PNGF DRSLPHF R +K PAAKGFV+NSFYSGLS TEFFF  M GREGLVDTAV
Sbjct: 655  LNGKRVPNGFEDRSLPHFKRHSKIPAAKGFVSNSFYSGLSPTEFFFLAMSGREGLVDTAV 714

Query: 735  KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFD 794
             TA+  YM RRLIK LEDL  QYD++VRN+ G I+QF+YG DG+DP  ME K   P++F 
Sbjct: 715  TTAEPMYMQRRLIKFLEDLCCQYDSTVRNSAGEIIQFVYGGDGLDPTYMEAKD-RPVDFH 773

Query: 795  RLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDK 854
            R    VKA      +  L   ++ +     +     +     F + LR F E Q     K
Sbjct: 774  RGFEHVKAAFSFPDEEPLDDIELQQAFNTIMDTDSFKMLGVDFQHELRVFVESQV----K 829

Query: 855  KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQ 914
            +IK V  + +  + + L  V      IT  QL  F      +Y   ++E GTA+GA+ AQ
Sbjct: 830  RIKKVRQL-FKMEGRSLLTVEKHLERITVGQLVEFCDFSKEKYERAKIEPGTAVGALCAQ 888

Query: 915  SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAAR 974
            SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN +K ISTP+I+ +L  +D+   AR
Sbjct: 889  SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINASKAISTPVISTQLLKDDDPEYAR 948

Query: 975  VVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKI 1034
             VKGRIEKT LG+V +  + V       + I LDM  I+   L ++A  ++ S+  T K+
Sbjct: 949  RVKGRIEKTTLGEVTEYFEEVYLPSGCFVKIKLDMNRIRLLKLEVDASSIQSSLC-TGKL 1007

Query: 1035 KLKQQHIKVLDFRKLEI-FPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKE 1093
            KL    + VL+ + + +      K  ++  ++  K  LP VI+KG   V RV+I      
Sbjct: 1008 KLNPDTVLVLNEKVIAVQCKETSKISLYGVMHHFKKELPTVIIKGFDDVSRVII------ 1061

Query: 1094 KRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDE 1153
              K+ ++    +Y LLVEG  ++ VM   GI G  T SN+I EV  TLGIEAA+  I  E
Sbjct: 1062 --KMDDSRNTPRYSLLVEGNNMREVMATYGIQGSSTTSNNILEVFSTLGIEAAKATIAKE 1119

Query: 1154 INETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFN 1213
            I  TM++HGMS+D+RH+ LL+DLM+ RGE+LGITR G+ KM  SVLMLASFE+T+DHLF+
Sbjct: 1120 IQSTMESHGMSVDRRHVALLSDLMSCRGEILGITRHGLAKMKSSVLMLASFERTSDHLFD 1179

Query: 1214 ASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            A+  G++D + GVSE IIMG+PM +GTG  K+
Sbjct: 1180 AAYYGQEDEVSGVSERIIMGVPMGIGTGSFKL 1211


>gi|451856837|gb|EMD70128.1| hypothetical protein COCSADRAFT_177734 [Cochliobolus sativus ND90Pr]
          Length = 1473

 Score = 1083 bits (2801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1333 (44%), Positives = 817/1333 (61%), Gaps = 115/1333 (8%)

Query: 4    PKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA-VLGIIHDRSKV---- 58
            P M+ LRK  + K I++ C     K   CP C  + G V+K     L IIH+R       
Sbjct: 141  PDMDTLRKGAVTKRILEDCR----KKKTCPYCNGLQGTVRKVPGHPLKIIHNRYDAFNRS 196

Query: 59   -----------TESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLY 107
                        E  Q F +A +   +    +  A   ++P+ VL LFK+++  DCE+L 
Sbjct: 197  TAKTKKAPPGKIEFDQSFETAKSANPDLDKHLKKAVDDMHPLRVLNLFKKISPEDCELLA 256

Query: 108  L---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEA 164
            +     RPE LI   + VPP+A+RPSV+ +G  + E+D+T ++  I   ++ ++  L   
Sbjct: 257  MIPEDARPEMLIWEYMPVPPVALRPSVMQEGG-ATEDDVTNKIGDICHISSIIRAGLARG 315

Query: 165  NSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKR 224
                  +  W+ LQ+++A YINSD  G+     + + + GF QRLKGK GRFR NLSGKR
Sbjct: 316  FPLQILMEQWDFLQLQIAMYINSDAPGLK-QQGLQKTMRGFSQRLKGKGGRFRQNLSGKR 374

Query: 225  VEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARM 284
            V+++GRTVI PDPNL I EVA+P R+A+ LTYPE+V+ +NI+KLR+ ++NG +KYPGA  
Sbjct: 375  VDFSGRTVIGPDPNLSIDEVAVPERIAKNLTYPEKVTRYNIDKLRRLVRNGSNKYPGANY 434

Query: 285  IRYPDGTAR-------VLYGKFRNQ------LAVELKSGCIVDRHLEDGDVVLFNRQPSL 331
            I    G  +       +   +F  +       +  LK G IV+RH+EDGD+VLFNRQPSL
Sbjct: 435  ILDDQGPNKDRGKISLIALSRFDTKGERLEGASKRLKIGDIVERHIEDGDIVLFNRQPSL 494

Query: 332  HRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNN 391
            H++SI+ HRA++ PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEA  LMGV+ N
Sbjct: 495  HKLSILSHRAKVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEATELMGVKYN 554

Query: 392  LCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVD--------- 442
            L TPKNG  ++A+ QDF+T+++L++ K+ F+DR  F  +  YM +G    D         
Sbjct: 555  LATPKNGTPIIAAIQDFITAAYLLSNKNNFFDRRTFCQIVNYMFNGEGAFDPDTGKRHPI 614

Query: 443  -LPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET 501
             +P P + KP  LWTGKQ+F++L+RP+   RV VNL    K + N   +     E     
Sbjct: 615  EIPPPVVWKPQALWTGKQVFNLLMRPYKKCRVLVNLEAACKQFKNTPDQPPDLNE----- 669

Query: 502  MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA-HATSGCMNRLAKLSAR 560
               ND ++  RNSE++ G + KAT+G+G KD ++ V++RD+G  HA  G MNRL+KLSAR
Sbjct: 670  ---NDAYLVIRNSEVMCGVMDKATVGDGKKDSVFYVMMRDFGPDHAVQG-MNRLSKLSAR 725

Query: 561  WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
            W+ N+GFS+GI DV P ++L+ KK  L+ E Y  C+  IK++ EGKLQ  PGCD  QT+E
Sbjct: 726  WLSNNGFSLGISDVTPGEKLNKKKQDLVQEAYAKCDKLIKDFKEGKLQRDPGCDEEQTME 785

Query: 621  AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
              I  IL+ +R+ AG  C   L   NSPL+M++CGSKGS IN+SQMVA VGQQ +GG R 
Sbjct: 786  NRIGGILSGVRQAAGDICFEELSRWNSPLLMAKCGSKGSNINVSQMVASVGQQMIGGARV 845

Query: 681  PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
             +GF  R+LPHFP+ A++PA+KGFV+NSF+SGL+ +EF FH M GREGLVDTAVKTA+TG
Sbjct: 846  ADGFHHRTLPHFPKAARQPASKGFVSNSFFSGLTPSEFIFHAMSGREGLVDTAVKTAETG 905

Query: 741  YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
            YMSRRL+K+LEDLS QYD++VRN+ G +VQF YGDD +DP +MEGK+ +P++FDR     
Sbjct: 906  YMSRRLMKSLEDLSAQYDDTVRNSSGTVVQFQYGDDNLDPVDMEGKA-KPVHFDRTFSHA 964

Query: 801  KATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAF------------------LNSLR 842
              +     +  L+PQ+V E  E +L A   +    A                     S+R
Sbjct: 965  VTSTWDNSESSLTPQEVREYTEARLNAQRNKYPRYALDGVTRLEYRDQTDRGIDQKESMR 1024

Query: 843  KFFEGQQDKLDKK----------IKFVEDIGWDDKSQILEEVTHKT-----SGITEKQLE 887
             F +  QD + KK          +  V+     DK Q   +    +     + I+E+ L+
Sbjct: 1025 DFLDTVQDYVFKKAQKLETTLAYLGIVQPNDRKDKKQSAADAEKYSLADGIAKISERALD 1084

Query: 888  VFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKE 947
             FI  C ++Y   RV+ G A+GAIGAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKE
Sbjct: 1085 TFITLCLTKYHRSRVQPGHAVGAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKE 1144

Query: 948  IINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIAL 1007
            IIN +  ISTP+I  EL    +E+AAR+VK R+EKT L  V   ++ V     A I + +
Sbjct: 1145 IINASSTISTPVIACELSNKISESAARIVKARVEKTYLRDVISYVEDVWHPNGAYIAMRI 1204

Query: 1008 DMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL---DFRKLEIFP-------PVDK 1057
            D +TI    + +    +  +I     +K  +    V       ++E+         PV  
Sbjct: 1205 DWDTINKLFVDVQPYEIAAAINAHKPLKWGKAGANVRISSSIIRVEVPDPNAAKKRPVKT 1264

Query: 1058 SKIHFELY----SLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGE-KKKYRLLVEG 1112
            ++ H E +     +K+++P V++KG     R +I      K++   N +   + +LLVEG
Sbjct: 1265 TRNHKEYFERVQQVKSLIPDVVIKGYPDCSRAII------KKESSPNAQGHYECQLLVEG 1318

Query: 1113 TGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMML 1172
             GLQ  M   GI+   TKSNH+ EV+  LGIEAAR  I+ EI + M    M ID RHM L
Sbjct: 1319 YGLQDCMTTPGIEPYNTKSNHVMEVKTVLGIEAARATIVREIGDVMG--NMDIDPRHMQL 1376

Query: 1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232
            LAD+MTF+GEV GITRFG+QK   SVL LASFEKT DHLF A+  G+ D I+GVSECIIM
Sbjct: 1377 LADVMTFKGEVFGITRFGLQKTRDSVLQLASFEKTPDHLFEAAARGKTDTIDGVSECIIM 1436

Query: 1233 GIPMPLGTGILKI 1245
            G  + LGTG +++
Sbjct: 1437 GQSVKLGTGAMQV 1449


>gi|396496347|ref|XP_003844722.1| similar to DNA-directed RNA polymerase iii largest subunit
            [Leptosphaeria maculans JN3]
 gi|312221303|emb|CBY01243.1| similar to DNA-directed RNA polymerase iii largest subunit
            [Leptosphaeria maculans JN3]
          Length = 1520

 Score = 1083 bits (2800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 603/1331 (45%), Positives = 824/1331 (61%), Gaps = 109/1331 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA-VLGIIHDRSKV- 58
            MR P M+ LR+T + K I++ C     K   CP CG + G V+K  A  L IIH+R    
Sbjct: 188  MRRPDMDTLRRTAISKKILEDCR----KKKTCPYCGALQGTVRKVPAHPLKIIHNRYDAY 243

Query: 59   --------------TESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
                           E  Q F +A     +    +  A   ++P+ VL LFK+++  DCE
Sbjct: 244  NRSTAKQKKAPAGKIEFDQSFEAAKAANPDLDKHLKKAVDDMHPLRVLNLFKKISPEDCE 303

Query: 105  VLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L +     RPE LI   + VPP+A+RPSV+ +G  + E+D+T ++  I   ++ ++  L
Sbjct: 304  LLAMIPEDARPEMLIWEYMPVPPVALRPSVMQEGG-ATEDDVTNKIGDICHISSIIRAGL 362

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
                     +  W+ LQ+++A YINSD  G+     + + + GF QRLKGK GRFR NLS
Sbjct: 363  ARGFPLQILMEQWDFLQLQIAMYINSDAPGLK-QQGLQKTMRGFSQRLKGKGGRFRQNLS 421

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVI PDPNL I EVA+P R+A+ LTYPE+ + +NI+KLR+ ++NG ++YPG
Sbjct: 422  GKRVDFSGRTVIGPDPNLSIDEVAVPERIAKNLTYPEKATRYNIDKLRRLVKNGANEYPG 481

Query: 282  ARMIRYPDG----------TARVLYGKFRNQL---AVELKSGCIVDRHLEDGDVVLFNRQ 328
            A  I   +G           A   + K   +L   A  LK G IV+RH+EDGD+VLFNRQ
Sbjct: 482  ANYILTDEGPNKDRGKISLIALSRHAKRGEKLEGPAKRLKIGDIVERHIEDGDIVLFNRQ 541

Query: 329  PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGV 388
            PSLH++SI+ HRA+I PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEA  LMGV
Sbjct: 542  PSLHKLSILSHRAKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEATELMGV 601

Query: 389  QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDR------ 440
            + NL TPKNG  ++A+ QDF+T+++L++ K+ FYDR  F  +  YM  GDG         
Sbjct: 602  KYNLATPKNGTPIIAAIQDFITAAYLLSNKNNFYDRRTFCQIVNYMFNGDGAYDPDTGLT 661

Query: 441  --VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
              +++P P + KP  LWTGKQ+F++L+RP+   RV VNL    K + N    T G     
Sbjct: 662  LPIEIPPPVVWKPQALWTGKQVFNLLMRPNKASRVLVNLEAACKQFKN----TPGQSP-- 715

Query: 499  IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA-HATSGCMNRLAKL 557
               +  ND ++  RNSE++ G + KAT+G+G KD ++ V++RD+G  HA  G MNRL++L
Sbjct: 716  --DLNENDAYLVIRNSEVMCGVMDKATVGDGKKDSVFYVMMRDFGPDHAVQG-MNRLSRL 772

Query: 558  SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
            SARW+ N+GFS+GI DV P ++L  KK  L+ E Y  C+  I ++ EGKLQ   GCD  Q
Sbjct: 773  SARWLTNNGFSLGISDVTPGEKLVQKKQALVEEAYAKCDKLIMDFKEGKLQRDAGCDEEQ 832

Query: 618  TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
            T+E  I  IL+ +R+ AG  C   L   NSPL+M++CGSKGS IN+SQMVA VGQQ +GG
Sbjct: 833  TMENRIGGILSGVRQAAGDICFEELSRWNSPLLMAKCGSKGSNINVSQMVASVGQQMIGG 892

Query: 678  RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
             R  +GF  R+LPHFP+ A++PA+KGFV+NSF+SGL+ +EF FH M GREGLVDTAVKTA
Sbjct: 893  ARVADGFHHRTLPHFPKAARQPASKGFVSNSFFSGLTPSEFIFHAMSGREGLVDTAVKTA 952

Query: 738  DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
            +TGYMSRRL+K+LEDLS QYD++VRN+ G +VQF YGDD +DP +MEGK+ +P++FDR  
Sbjct: 953  ETGYMSRRLMKSLEDLSAQYDDTVRNSSGTVVQFQYGDDNLDPVDMEGKA-KPVHFDRTF 1011

Query: 798  MKVKATCPPAGQRYLSPQQVSEIVEKQLAA----YGKESC-----------SEAFLN--- 839
                 +     +  LSP +V E  E +L A    Y +              S+A ++   
Sbjct: 1012 SHAVTSTWDNSEPTLSPGEVREYTEAKLNAERNKYPRYKLDDVTKLDYRDKSDAGIDQKE 1071

Query: 840  SLRKFFEGQQDKLDKKIKFVE-----------DIGWDDKSQILEEVTHKTSGITEKQLEV 888
            S+R F +  QD + KK   +E           ++  D++      +    + I+++ L+ 
Sbjct: 1072 SVRDFLDTVQDYIFKKAGKLETTLAYLGITEPNVPRDERDLEKYSLADGIAKISQRALDA 1131

Query: 889  FIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEI 948
            FI  C ++Y   RV+ G A+GAIGAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEI
Sbjct: 1132 FITLCLTKYHRSRVQPGHAVGAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEI 1191

Query: 949  INGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALD 1008
            IN +  ISTP+IT EL    +E+AAR+VK R+EKT L  +   ++ V     A I + +D
Sbjct: 1192 INASSTISTPVITCELSNKVSESAARMVKARVEKTYLRDIISYVEDVWHPNGAYIAMRID 1251

Query: 1009 METIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL---DFRKLEIFP-------PVDKS 1058
             +T     + +    +  +I +   +K  +    V       ++EI         PV  +
Sbjct: 1252 WDTANKLFIDVQPGEIIRAINKHKPLKWGKAGAAVRISNSLIRVEIPDPASAKKRPVKTT 1311

Query: 1059 KIHFELYS----LKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTG 1114
            K H E +     +K ++P V++KG     R +I    K+       GE  + +LLVEG G
Sbjct: 1312 KNHKEFFERVQHVKALIPDVVIKGYPDCTRAII----KKDSSPNAQGE-YECQLLVEGYG 1366

Query: 1115 LQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLA 1174
             +  M   GI+  KTKSNHI EV+  LGIEAAR  I+ EI + M    M ID RHM LLA
Sbjct: 1367 FRECMTTPGIEPYKTKSNHIMEVRTVLGIEAARATIVREIGDVMG--NMDIDPRHMQLLA 1424

Query: 1175 DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGI 1234
            D+MTF+G+V GITRFG+QK   SVL LASFEKT DHLF A+  G+ D I+GVSECIIMG 
Sbjct: 1425 DVMTFKGDVYGITRFGLQKTRDSVLQLASFEKTPDHLFEAAARGKTDTIDGVSECIIMGQ 1484

Query: 1235 PMPLGTGILKI 1245
             + LGTG +++
Sbjct: 1485 SVKLGTGAMQV 1495


>gi|239614510|gb|EEQ91497.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
            dermatitidis ER-3]
          Length = 1456

 Score = 1082 bits (2799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/1299 (45%), Positives = 816/1299 (62%), Gaps = 87/1299 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKVT 59
            +R P ++ LR+  + K I ++C     K   C RC  +NG+VKKA  + L I H++ +  
Sbjct: 138  LRRPGIDNLRRMQIAKKINERCR----KTRTCYRCNAVNGVVKKAGTSALKITHEKFRAF 193

Query: 60   ESL---------------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
             +                Q F  A     + +     A   L+P+ VL LF+ ++D DCE
Sbjct: 194  NASSSVKKIPPPSKVVFDQSFEEAKKSNPDIEKHFKKAHDDLHPLRVLKLFRSVSDKDCE 253

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP+ IRPSV  + + S E+D+T +L  IIQ+N +L+  L
Sbjct: 254  LLGLNPEEARPEVFLWQYIPAPPVCIRPSVGQEAA-STEDDLTAKLGDIIQSNINLKNAL 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
             +       +  W+ +Q+++A YINSDV G+       +P+ GF QRLKGKQGRFRGNLS
Sbjct: 313  YKGAPVQTIIECWDYMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++ RTVISPDPNL++ EVA+P  +A  +TYPE+V+ +N EKLRQ I+NG   +PG
Sbjct: 372  GKRVDFSARTVISPDPNLRVDEVAVPQLIAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 431

Query: 282  ARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +  +  +    + +G   N +A +L+ G IV+RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYVFKKSQNFKMNLKFGN-PNLVANDLEEGDIVERHIEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491  FAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++++ QDF+T++++++ KD FYDR AF+ +C YM     R DLP P+++KP  LWTGKQ
Sbjct: 551  PIISAIQDFITAAYMLSSKDVFYDRKAFTHICLYMLQSDTRFDLPPPSVIKPQMLWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F+VL+RP+    V VNL    + +       +G        +  NDG++  RNSE++ G
Sbjct: 611  IFNVLMRPNKQSPVLVNLDAACRGFKA----PKGTPR----DLDANDGWLCIRNSEVMCG 662

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K+T+G+G KD ++ V+LRD+G    +  MNRL++LSARW  N GFSIGI DV P  +
Sbjct: 663  VMDKSTIGSGKKDSVFYVMLRDFGPEVAAEGMNRLSRLSARWFTNMGFSIGITDVYPGDK 722

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L ++K  ++ + Y  C+  I+ +  GKL+  PGCD   T+E  I+ IL+++R+ AG  C+
Sbjct: 723  LLEEKSHIVEDAYAQCDEVIQLFRTGKLEKAPGCDEQMTMENTISGILSKVRQQAGAICI 782

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN++QMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P
Sbjct: 783  AELSRWNSPLIMATSGSKGSDINVAQMVALVGQQIIGGQRVQDGFQDRTLPHFPKHARQP 842

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AKGFV NSF+SGL+ TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD+
Sbjct: 843  PAKGFVRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDD 902

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +MEG++  P++FDR     + T      + L P ++  
Sbjct: 903  TVRNSSSNIVQFQYGDDKLDPVDMEGRA-RPVHFDRTFTHCEVTTFDNSDKGLLPDEIIT 961

Query: 820  IVEKQLA-AYGKESCSEAF----------------LNSLRKFFEGQQDKLDKKIKFVEDI 862
            + +  LA A  K +  +                  L S R F +  +D +  K + +  I
Sbjct: 962  LCQNLLAPARAKLTRFDLLGKNLDYNDRSDHGIDQLESARDFLQSIEDYVRAKAERLRAI 1021

Query: 863  GWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQ 922
              D  ++        T+ ++ K L  FI  C ++Y+  +VE G A+GA+GAQSIGEPGTQ
Sbjct: 1022 --DGGTERRGRGIDHTAKVSTKALTSFITACLTKYKRAQVEPGHAVGAVGAQSIGEPGTQ 1079

Query: 923  MTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEK 982
            MTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT EL    +  AA++VKGR+EK
Sbjct: 1080 MTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVITCELVNKHDLRAAQIVKGRVEK 1139

Query: 983  TLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIK-LKQQHI 1041
            T +  +   I+   T   A I I +D  TIQ+  L +N   +++ +V   K K  K   +
Sbjct: 1140 TFIRDIIYYIEEDWTGNEAYINIKIDFSTIQNLQLELN---LQDILVAIKKHKRFKSADL 1196

Query: 1042 KVLDF-RKLEIFPPVDKSKI--------------HFELYSLKNVLPMVIVKGIKTVERVV 1086
            K   F   + IF     ++               +  L  LK ++P + V G     R +
Sbjct: 1197 KFRSFGSHIHIFVDQHATRTALSKTEEAATGADPYIRLKHLKRLIPNIQVIGHPQCARAI 1256

Query: 1087 IAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAA 1146
            I   E                LLVEG GL+  M  +GI+G  T++N+I E +  LGIEAA
Sbjct: 1257 IRTDETNTTNT----------LLVEGYGLRDCMTTDGINGHHTRTNNIMEARTVLGIEAA 1306

Query: 1147 RICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEK 1206
            R  I+DEI+E MK   MSID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LASFEK
Sbjct: 1307 RTTIVDEISEVMK--DMSIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEK 1364

Query: 1207 TADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            TADHLF+A   GR D IEGVSECII+G  + LGTG +++
Sbjct: 1365 TADHLFDAGGAGRTDLIEGVSECIIVGKSVSLGTGAMEV 1403


>gi|452982836|gb|EME82594.1| hypothetical protein MYCFIDRAFT_187946 [Pseudocercospora fijiensis
            CIRAD86]
          Length = 1442

 Score = 1082 bits (2798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1322 (45%), Positives = 807/1322 (61%), Gaps = 106/1322 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA-VLGIIHDR---- 55
            +R P ++ LRK  + K I  +C     K   CP C  +NG V+K     + + H+R    
Sbjct: 140  LRRPGLDGLRKDVITKKISAECR----KVKYCPHCSSLNGPVRKVAGHPIKMFHNRWAVY 195

Query: 56   ------SKVT-ESLQEFA----SAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
                  SKV  + +Q F      AI   K+ +  +  AT  L P+ VL + K++ + D E
Sbjct: 196  TNSNAKSKVKPQEMQAFERTFEEAIKADKDVERHMKRATDDLTPLRVLNILKKVPNADVE 255

Query: 105  VLYLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQE 160
            +L +      RPE +I T+I  PP+AIRPSV  + + S E+DIT +L  IIQ N  +   
Sbjct: 256  LLGMDPHSGGRPEHMIWTHIPAPPVAIRPSVAQE-TASTEDDITNKLGDIIQINGLIAAT 314

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNL 220
            L       K +  WE LQV++A YI+ ++ G+       + + GF QRLKGKQGRFRGNL
Sbjct: 315  LHAGQHLSKVMDMWEFLQVQIAMYIDGNLPGLGRDSAYGKAMRGFCQRLKGKQGRFRGNL 374

Query: 221  SGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYP 280
            SGKRV+++GRTVISPDPNL I EVA+P R+A  +TYPERV+ HNIEKL+ C+  G   +P
Sbjct: 375  SGKRVDFSGRTVISPDPNLSIDEVAVPSRVAVNMTYPERVTKHNIEKLKACVGRGDKVHP 434

Query: 281  GARMIRYPDGTARVLY------GKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRM 334
            GA  I       R++       G  + ++A +L+ G  V+RHLEDGD+VLFNRQPSLH++
Sbjct: 435  GANYIIKGRDKRRLVLRMVGQRGDLK-KVADQLEIGDTVERHLEDGDIVLFNRQPSLHKL 493

Query: 335  SIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCT 394
            SI+ HRA+I PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEA  LMGV++NL T
Sbjct: 494  SILSHRAKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEATELMGVKHNLAT 553

Query: 395  PKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVD----------LP 444
            PKNG  ++A+ QDF+T ++L+++KD F+ R  F+ +  +M + M   D          +P
Sbjct: 554  PKNGTPIIAAIQDFITGAYLVSQKDLFFSRRQFTQVVGFMYNAMQVKDPYTGEEYPIQIP 613

Query: 445  TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
             PAI KP  LWTGKQ++++LI+PH    V VNL  K K Y+      +GD    I  M  
Sbjct: 614  PPAIWKPQCLWTGKQVWNLLIKPHPKYPVNVNLEAKLKQYAPPT--RKGD----IPDMVD 667

Query: 505  NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
             D ++  RNSE++ G   KAT+G+G KD ++ V+LRD+G    +  M RLAKLSARW+G 
Sbjct: 668  TDSYLVIRNSEVMCGAFDKATIGDGKKDSVFYVILRDFGPEYAAAAMTRLAKLSARWLGE 727

Query: 565  HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
             GFSIGI DV P   L+ +K  L+   Y+ C+  I +Y +GKL+   GCD  QT+E +++
Sbjct: 728  QGFSIGISDVYPSDTLTKRKQALVDAAYKQCDEIIDKYKKGKLERSAGCDEEQTMEILLS 787

Query: 625  DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
             IL+++R+  G AC   L   N+P+ M++CGSKGS IN+SQMVA VGQQ +GG+R   GF
Sbjct: 788  GILSKVRQQCGDACFAELSKFNAPMTMAKCGSKGSNINVSQMVAAVGQQIIGGKRVLEGF 847

Query: 685  IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
             DR+LPHFP+ +++P AKGFV +SF+SGL+ TEF FH M GREGLVDTAVKTA+TGYMSR
Sbjct: 848  QDRTLPHFPKASRDPLAKGFVFDSFFSGLTPTEFIFHAMSGREGLVDTAVKTAETGYMSR 907

Query: 745  RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATC 804
            RL+K+LEDLS QYD +VRN+   +VQ  +GDDG+DP +MEG S +P+NF+R  M    + 
Sbjct: 908  RLMKSLEDLSAQYDLTVRNSSSGVVQMKFGDDGLDPVDMEG-SAKPVNFERTWMHSITST 966

Query: 805  PPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDK------------- 851
                +R L+  ++   V   L    KE          RK      DK             
Sbjct: 967  WDNAERALTQSEIETYVNTTL---NKERAKLGRFTEDRKPLPYDDDKPMSTDQSEYSRQF 1023

Query: 852  LDKKIKFVED-IGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGA 910
            LD    F+ D +     +Q   + +     +++  L+ F+  C  ++   + EAG A+GA
Sbjct: 1024 LDVVTNFIMDKVSKMVSTQNRLKNSDGVFKLSQAALDCFLHLCLHKFEKSKTEAGHAVGA 1083

Query: 911  IGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNE 970
            +GAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT  L+    E
Sbjct: 1084 VGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKVISTPVITCALDSKYEE 1143

Query: 971  NAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQ 1030
             A R  K  IEKT LG +   ++ V  +    I + ++   +++  L I+   +   I +
Sbjct: 1144 MAGRFAKALIEKTYLGDIVDYVEDVWHANGCYINMRINWAQVENLGLRISMYEILNCIER 1203

Query: 1031 TPKIKL--------KQQHIKVLDFRKLEIFPPVDKSK-------------------IHFE 1063
            T   K            HI+V       + PP D+ K                   +   
Sbjct: 1204 TKGFKTLGVSARPSGHHHIRV------NMSPPDDRPKPRRAISGKPRGPEPDSSELMFMH 1257

Query: 1064 LYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEG 1123
            L+SLK  LP V+VKG    +R +I + +K     K++  ++   +LVEG GLQ  M  EG
Sbjct: 1258 LHSLKRKLPAVVVKGYPDAQRAIIKKDDK-----KDSTGQEPISVLVEGYGLQLCMTTEG 1312

Query: 1124 IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
            +DG  TKSN++ E++  LGIEAAR  IIDEI+  M   GM ID RHM LLAD+MT++GEV
Sbjct: 1313 VDGYHTKSNNVMEMRDVLGIEAARKTIIDEISSVMG--GMDIDPRHMQLLADVMTYKGEV 1370

Query: 1184 LGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGIL 1243
            LGITRFG+ KM  SVL LASFEKT DHLF+A+   + D IEGVSECIIMG  M +GTG +
Sbjct: 1371 LGITRFGLAKMRDSVLQLASFEKTPDHLFDAAARMKKDDIEGVSECIIMGQSMSVGTGAM 1430

Query: 1244 KI 1245
            K+
Sbjct: 1431 KV 1432


>gi|268535924|ref|XP_002633097.1| C. briggsae CBR-RPC-1 protein [Caenorhabditis briggsae]
          Length = 1402

 Score = 1082 bits (2797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/1290 (46%), Positives = 810/1290 (62%), Gaps = 62/1290 (4%)

Query: 3    NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-AVLGIIHDRSKVTES 61
            NP ++ L +  L K IV  C     K+  C +CG  NG VKKAV AVL I        + 
Sbjct: 132  NPNIDYLHRKALHKRIVAACK----KSSTCTQCGLKNGTVKKAVGAVLKIAFASPVPADE 187

Query: 62   LQEFASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYL----SERPEKLI 116
            L ++ +     +E    V    + +LNP+ V  LF  + + D  VL +     + P  L+
Sbjct: 188  LGKYQTVFNANQEIGDHVKKMKFTLLNPLFVQKLFANIKEADIPVLMVRSGEEKHPNDLL 247

Query: 117  ITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWE 175
            +T + VPP+ IRPSV+ +  S + E+D+T +L  I+ TN  L++   +   A      WE
Sbjct: 248  LTRMPVPPVCIRPSVVSEVKSGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPAKTLFETWE 307

Query: 176  TLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISP 235
             LQ++ A YINS++ G+P  MQ  R +  F QRLKGKQGRFRGNL GKRV+++GRTVISP
Sbjct: 308  HLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISP 367

Query: 236  DPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARV 294
            DPNL+I +V +P+ +A  LT+PE V+  NI+K+R+ I NG D +PGA  ++    G  ++
Sbjct: 368  DPNLRIDQVGVPVHVAMTLTFPEIVNASNIDKMRKLIVNGSDVHPGANYLVDKKTGHKKL 427

Query: 295  LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNES 354
            L    R +LA  L+ G  V+RHL+D DVVLFNRQPSLH++SIM HRA++MP RT RFNE 
Sbjct: 428  LKYGNREELAKNLRLGDTVERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNEC 487

Query: 355  VCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFL 414
             C PYNADFDGDEMN+H+PQT EA+ EA  LM V+NNL TP++GE LVA+ QDF+T  +L
Sbjct: 488  ACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYL 547

Query: 415  ITRKDTFYDRAAFSLMCCYMGDG----MDRVDLPTPAILKPVELWTGKQLFSVLIRPHAN 470
            +T KDTF  RA        + D       ++ +P PAI +PVELWTGKQL  ++IRP   
Sbjct: 548  LTHKDTFLPRAEVYRFAAALIDASAKKQSKIRIPPPAIRRPVELWTGKQLIELIIRPDKG 607

Query: 471  MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGN 530
             +V +NLT K K+YS  L             +C  D +V  RNS L++G L K+ LG+ +
Sbjct: 608  SQVSLNLTAKNKSYSGNL------------ELCSKDSYVIIRNSVLLAGVLDKSLLGSSS 655

Query: 531  KDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISE 590
            K  ++ +L+RDYG  A    M RLA+++  ++ N GFSIGI DV+P + L  +KG+L+  
Sbjct: 656  KVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSERLLQEKGQLVDN 715

Query: 591  NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLI 650
             YE C   I+E  EGKL+ +PGC   +TLEA+I   L+ IR+ AG+ C+ +L   N+PL 
Sbjct: 716  GYEKCAQYIRELEEGKLKAQPGCTEEETLEAIILRELSTIRDHAGQVCLRNLSKYNAPLT 775

Query: 651  MSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFY 710
            M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF RK K P AKGFVANSFY
Sbjct: 776  MAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFY 835

Query: 711  SGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQ 770
            SGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K LEDL   YD +VR++ G +++
Sbjct: 836  SGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIE 895

Query: 771  FLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGK 830
            F++G+DG+DP+ ME K G  ++F  +L   K       ++ +  +++ E+++ ++    K
Sbjct: 896  FVFGEDGLDPSMMEAKDGSVVDFTHVLEHAK-NIQTKKEKPIPAEKLDEVLKTEVQKQFK 954

Query: 831  ESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKS---QILEEVTH----------- 876
            E     F + ++ +    + K  KK + ++    + +S   +  EE              
Sbjct: 955  EKYVH-FADQMKDYLLQTEIKKSKKWQGIQTHCAEHESANAKTREECAKCTNLDTYRTSL 1013

Query: 877  -KTSGITEKQLEVFIQTCFSRYRVKR--VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGV 933
             K S +T  QL  FIQ C+  Y++ R   E GTA+GAI A SIGEP TQMTLKTFHFAGV
Sbjct: 1014 LKNSCLTRSQLLSFIQLCY--YKIARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGV 1071

Query: 934  ASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIK 993
            ASMNITQGVPRIKEIIN  K ISTPIITA L    +E+ AR VK RIEKT LG++   I+
Sbjct: 1072 ASMNITQGVPRIKEIINAVKTISTPIITASLLDPYDESLARRVKARIEKTTLGEICDYIE 1131

Query: 994  IVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRK--LEI 1051
             V       +++ L+ + I+   L ++ + +  +IV T K+    +  K++   K  + I
Sbjct: 1132 EVYLPDDYFLLVKLNSKRIRLLQLEVSLESISYAIV-TSKVCPMMRGCKIISHGKTMMAI 1190

Query: 1052 FPP-VDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLV 1110
             PP   K      +  LK  L  V+VKGI +V R VI   EK         +   Y LLV
Sbjct: 1191 RPPSTSKLSKTMTMQMLKYSLGNVVVKGISSVNRCVIHADEK---------KGDCYSLLV 1241

Query: 1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
            EGT  ++V+ + G+D  KT  N+   V + LGIEAAR CII+EI  TM AHG+ +D+RH+
Sbjct: 1242 EGTDFRSVLSSVGVDPKKTNFNNALVVAEVLGIEAARTCIINEIIATMDAHGIGLDRRHV 1301

Query: 1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
            MLLAD+MT+RGEVLGITR G+ KM  SVL+LASFEKT DHLF A+   + D I GVSECI
Sbjct: 1302 MLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQKDVIHGVSECI 1361

Query: 1231 IMGIPMPLGTGILKIRQRDAVPPMLKYGAP 1260
            IMG PM +GTG  K+ Q+     +LK   P
Sbjct: 1362 IMGTPMTVGTGTFKLMQKYEKKALLKKNTP 1391


>gi|296827068|ref|XP_002851111.1| DNA-directed RNA polymerase III largest subunit [Arthroderma otae CBS
            113480]
 gi|238838665|gb|EEQ28327.1| DNA-directed RNA polymerase III largest subunit [Arthroderma otae CBS
            113480]
          Length = 1443

 Score = 1080 bits (2794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1299 (45%), Positives = 812/1299 (62%), Gaps = 88/1299 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDR---- 55
            +R P ++ LR+  + K I  +C     K   C  C  ING VKKA    L I+HD+    
Sbjct: 137  LRRPGLDNLRRMQINKRINVRCR----KTPVCYYCNAINGTVKKASTGALKIVHDKFRAF 192

Query: 56   -----SKVTESLQEFASAITHTKESKAAVNVATYI------LNPVNVLFLFKRMTDTDCE 104
                 +K      + A   +  +  K+  ++  +       LNP+ VL LF+R++D DCE
Sbjct: 193  NASLSAKKIPPPSKLAFDRSFEEAKKSNPDIEKHYRRVFDDLNPLRVLKLFRRISDEDCE 252

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP+ IRPSV  +G+ S E+D+T +L  I+Q+N +L+  L
Sbjct: 253  LLSLNVDEARPEYFLWQFIPAPPVPIRPSVGQEGA-STEDDLTAKLGDIVQSNLNLKMAL 311

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
             +       +  W+ +Q+++A YINSD+ G+  +    + + G  QRLKGKQGRFRGNLS
Sbjct: 312  DKGAPVQTIIECWDYMQLQIAVYINSDIPGLQ-NTDSKKSIRGLCQRLKGKQGRFRGNLS 370

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL+I EVA+P  +A  +TYPERV+ +N EKLRQC++NG   +PG
Sbjct: 371  GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCVRNGTKTWPG 430

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +     + R+   YG   N +A +L  G IV+RHLEDGD+VLFNRQPSLH++SI+ H
Sbjct: 431  ANYLIKQGNSFRLFLKYGNL-NMIANQLSEGDIVERHLEDGDIVLFNRQPSLHKLSILSH 489

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
              ++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR+EA+ LMGV+NNL TPKNG 
Sbjct: 490  FVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARSEAMELMGVKNNLATPKNGA 549

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++A+ QDF+T+++L++ KD F+DR  F+ +C  M D   R++LP PA LKP  LWTGKQ
Sbjct: 550  PIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLSMLDSSTRLELPPPATLKPQMLWTGKQ 609

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +FSVL+RP+ +  V VNL    + +  K ++ +  +      +C NDG++  RNSE++ G
Sbjct: 610  VFSVLMRPNKDSPVKVNLDAACRQF--KRVKDQPRD------LCENDGWLCIRNSEMLCG 661

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
               K+T+G+G KD ++ V+ RD+G  A +  MNRL+KLSARW+ N GFSIGI DV P   
Sbjct: 662  VADKSTIGDGRKDNIFFVIQRDFGPAAAAEAMNRLSKLSARWLTNKGFSIGITDVYPGTG 721

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K  LI   ++ C+  I + ++ K Q K   D+ QT E  IT ILN++R+ AG+ C+
Sbjct: 722  LVKLKDTLIDNAFKQCDDLIIKASKEKPQ-KGKSDSRQTAENEITGILNKLRQQAGEYCI 780

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   N+PLIM++CGSKGS IN+SQMVA VGQQS+   R   GF DR+LPHFPR ++  
Sbjct: 781  SELSKHNAPLIMAKCGSKGSDINVSQMVAVVGQQSIENSRVSKGFQDRTLPHFPRHSQHA 840

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AKGFV NSF+SGL+ TEF FH M GREGL+DTAVKTA+TGYMSRRL+K+LEDLS +YDN
Sbjct: 841  LAKGFVRNSFFSGLTPTEFLFHAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDN 900

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VR++   ++QF YGDD +DP NME  S +P++F+R     ++T      R LS  ++  
Sbjct: 901  TVRDSSSFVIQFQYGDDQLDPVNMEA-SAKPVHFERTFTHAESTTYDRNDRGLSADEIMA 959

Query: 820  IVEKQLAAYGKESCSEAFLNSLRKF----------FEGQQDKLDKKIKFVEDIGWDDKSQ 869
            + E+ LA   K+      L +   +          +E  +D L    +FV +     +S 
Sbjct: 960  LCEELLAPERKKLARFDLLGNTLPYTAENDFATDQWESNRDFLSSIEEFVANKAEQLRSI 1019

Query: 870  ILEE------VTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQM 923
              EE       TH T  ++ + L+ FI +C  +Y    VE G +IGAIGAQSIGEPGTQM
Sbjct: 1020 DGEESKGQMAFTH-TGKLSARTLKAFIASCLDKYMRAHVEPGHSIGAIGAQSIGEPGTQM 1078

Query: 924  TLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKT 983
            TLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTPIIT EL    +  AA +VKGRIEK 
Sbjct: 1079 TLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPIITCELTNKTDMRAAEIVKGRIEKL 1138

Query: 984  LLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINAD-----IVKESIVQTPKIKLKQ 1038
             L  +   I+ + +   + I I +D  TI    L I        I K    +   ++ + 
Sbjct: 1139 FLKDIVYYIEEIRSESTSFIKIKVDFSTIDKLQLEITLPQILLAIKKHKAFKAADLRFQT 1198

Query: 1039 QHIKV------------LDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVV 1086
             H  +            +   +L+I      S  +  +  L+ +LP + V G     R V
Sbjct: 1199 YHSHIHIYVDEGASMAGVSVSELKI----TGSDPYIRINYLRRILPNIQVFGYPDCARAV 1254

Query: 1087 IAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAA 1146
            I   EK    +          LLVEG GL+A M  +G+DG +T++NHI E++  LGIEAA
Sbjct: 1255 IRVGEKVATNI----------LLVEGYGLRACMTTDGVDGHRTRTNHIMEMRDVLGIEAA 1304

Query: 1147 RICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEK 1206
            R  IIDEI+  M   GMSID RHM LLAD+MT++GEVLGITRFG+ K+  SVL LASFEK
Sbjct: 1305 RTTIIDEISSVMS--GMSIDPRHMQLLADVMTYKGEVLGITRFGLAKIRDSVLQLASFEK 1362

Query: 1207 TADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            TADHLF+A   GR D ++GVSECIIMG  + LGTG +++
Sbjct: 1363 TADHLFDAGGAGRRDAVQGVSECIIMGKTISLGTGSMEV 1401


>gi|195132669|ref|XP_002010765.1| GI21717 [Drosophila mojavensis]
 gi|193907553|gb|EDW06420.1| GI21717 [Drosophila mojavensis]
          Length = 1382

 Score = 1080 bits (2792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/1269 (46%), Positives = 797/1269 (62%), Gaps = 59/1269 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            + NP    L K  L   ++ K    A K  KCP C   NG VKK   +L I+HD  K  +
Sbjct: 127  LHNPNFSYLGKKALHSQMLAK----AKKVTKCPHCNAANGGVKKGPGLLKILHDPYKGRK 182

Query: 61   SLQEFAS---AITHTKESKAAVNV------ATYILNPVNVLFLFKRMTDTDCEVLYLSER 111
                F S    +  + E    +N+      A   L P+ VL LF+++  +D  +L +  R
Sbjct: 183  KDATFTSHMEEMLRSTELNRDLNLTLSNYSAAEELTPLMVLDLFEQIPQSDIALLGMCSR 242

Query: 112  ---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               P+ LI+T + VPP  IRPSV+ +  + + E+D+T +   I+  N  +Q+ +      
Sbjct: 243  GAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKI 302

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                  W+ LQ+ VA Y +S++ G+P +M   +   G VQRLKGKQGRFRGNLSGKRV++
Sbjct: 303  ELIHEDWDFLQLHVALYFHSEISGIPLNMAPKKTTRGIVQRLKGKQGRFRGNLSGKRVDF 362

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY 287
            +GRTVISPDPNL I +V +P+R+A+ILTYPERV+  NI +++Q ++NGP  +PGA  ++ 
Sbjct: 363  SGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRQMKQLVRNGPAMHPGANYVQQ 422

Query: 288  PDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
               + +  + YG  R ++A ELK G IV+RHL D D+VLFNRQPSLH+MSIMCHRA++ P
Sbjct: 423  RGSSFKKYLAYGN-REKVAQELKCGDIVERHLRDDDIVLFNRQPSLHKMSIMCHRAKVQP 481

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE  C PYNADFDGDEMN+H+PQTEEAR EAL+LMG Q+NL TPKNGEIL+A+T
Sbjct: 482  QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAAT 541

Query: 406  QDFLTSSFLITRKDTFYDRA-AFSLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS 462
            QDF+T  +L+T+K+ F  +  A  L  C++   D   R+ +P PAI KP  LWTGKQLFS
Sbjct: 542  QDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMRIQMPPPAIWKPRRLWTGKQLFS 601

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            +L+RP+ +  V +N+  K + YS  +             +C ND +++ RNSEL+ G + 
Sbjct: 602  LLMRPNDDSIVRLNMVNKGRNYSGNM------------DLCVNDSWIHIRNSELMCGTMD 649

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            KAT+G+G K  ++ +LLRD+G    +  M RLA++++ +I N GFS GI DV P   L  
Sbjct: 650  KATMGSGTKQCIFYLLLRDFGEAFATKAMWRLARIASYFIQNRGFSFGISDVTPSARLLQ 709

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K  L+   Y  CN  I++   G LQ +PGC   +TLEAV+   L+ IRE A K C   L
Sbjct: 710  HKQVLLERGYAKCNEYIEKLKAGTLQCQPGCTPEETLEAVMLRELSGIREQAAKTCFAEL 769

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NS LIM+  GSKGS INISQM+ACVGQQ++ G+R PNGF +R+LPHF R +  PAA+
Sbjct: 770  HPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFDRHSAIPAAR 829

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFV NSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+K LEDL + YD +VR
Sbjct: 830  GFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVR 889

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            NA   +V  +YG DG+DP +ME ++ +P++ +     ++A  P   Q+ L   ++   VE
Sbjct: 890  NAVNEMVDTIYGGDGLDPVSMETRN-KPVDLNHQYDNLRAQLPCGDQQPLEAGEILSTVE 948

Query: 823  K--QLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKI-KFVEDIGWDDKSQILEEVTHKTS 879
               QL  + +           ++      + + K+I K  E  G + K     ++  +  
Sbjct: 949  SLLQLPEFAEARA------DFKRDVTSHLNTVTKRISKLQEKYGAEHK-----DLCKQIE 997

Query: 880  GITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNIT 939
             I+ +QL  F++    RY     E GTA+GAI AQSIGEPGTQMTLKTFHFAGVASMNIT
Sbjct: 998  CISREQLLEFLRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNIT 1057

Query: 940  QGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSR 999
            QGVPRI EIIN  K ISTPIITAEL  N +   AR VK RIEKT LG+++  +++V   +
Sbjct: 1058 QGVPRIVEIINATKTISTPIITAELRNNTSMEFARQVKARIEKTTLGELSSFVELVCGPQ 1117

Query: 1000 LASIVIALDMETIQDAHLCINADIVKESIVQTP-KIKLKQQHIKVLDFRKLEIFPPVDKS 1058
               +VI +D   I+   L I+ D +  SI+++  +IK  Q H      R +        +
Sbjct: 1118 SCHLVIGIDTARIKVLGLHIDLDSIMCSILKSRLRIKANQLHAIPKKSRIIVRVEATRNA 1177

Query: 1059 KIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
             I+ EL  L   +  V+V G+  + R VIA        V +  +   Y+L +EG GL+ V
Sbjct: 1178 TINAELARLATTIQNVVVAGLPNIARAVIA--------VDDAKQPPTYKLCIEGYGLREV 1229

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            +   G+ G +T+SN+I E+ QTLGIEAAR  I+ EI + M+ HGMS+D RH+MLLA  MT
Sbjct: 1230 IATYGVVGERTRSNNICEIYQTLGIEAARTIIMSEITDVMEGHGMSVDWRHIMLLASQMT 1289

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
             RGEVLGITR G+ KM +SV  LASFEKTADHLF+A+  G+ D I GVSE II+G+P  +
Sbjct: 1290 ARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPAGI 1349

Query: 1239 GTGILKIRQ 1247
            GTGI K+ Q
Sbjct: 1350 GTGIFKLLQ 1358


>gi|156043073|ref|XP_001588093.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|154694927|gb|EDN94665.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1459

 Score = 1079 bits (2791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/1337 (44%), Positives = 826/1337 (61%), Gaps = 120/1337 (8%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            +R P ++ L++T + K I ++C     KA +CP C   NG ++K V+V+ + HD+     
Sbjct: 136  LRKPGIDNLKRTQICKKINEQCR----KASQCPHCDATNGQIRK-VSVVRLAHDKYTKYN 190

Query: 58   ------------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
                        + E  + F  A  +  E +  V      L+P+ VL LFK +T +DCE+
Sbjct: 191  KSTAAKKVAPPGMAEYQKSFEEAKKNNTELEKHVKKVYEDLHPLRVLNLFKLITPSDCEL 250

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L ++    RPE  +   +  PPI IRPSV  DG  SNE+D+T +L  I+  ++ ++  L 
Sbjct: 251  LGINPAEGRPEMFLWQFVPAPPICIRPSVAQDGG-SNEDDLTAKLAEIVNMSSLIRAALQ 309

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            +  +    +  W+ LQ+++A Y+NSDV G+       + + GF QRLKGKQGRFRGNLSG
Sbjct: 310  KGQAVQTIMEQWDFLQLQIAMYVNSDVPGLQ-QPGFGKAIRGFCQRLKGKQGRFRGNLSG 368

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I EVA+PI +A+ LTYPERV   NIEKLR+C+ NGP+ +PGA
Sbjct: 369  KRVDFSGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRKCVINGPNVHPGA 428

Query: 283  RMIRYPDGTARV-LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRA 341
            + I   D   ++ L    R+  A  LK G +V+RHLEDGD+VLFNRQPSLH++SIM H A
Sbjct: 429  QQIVKKDSNHKISLKFAKRDNEAKFLKIGDVVERHLEDGDIVLFNRQPSLHKLSIMSHYA 488

Query: 342  RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEIL 401
            +I PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEA+ LMGV+NNL TPKNGE +
Sbjct: 489  KIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAINLMGVKNNLSTPKNGEPI 548

Query: 402  VASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLF 461
            +++TQDF+T+++L++ K+ F+DR  F+ +C YM D    + LP PAILKP  LWTGKQ+F
Sbjct: 549  ISATQDFITAAYLLSSKENFFDRKTFTNICMYMVDSNLHLQLPPPAILKPQALWTGKQVF 608

Query: 462  SVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQL 521
            S+L+RP+    + VN+  K + +   ++      +     M  NDG++  RNSE++ G +
Sbjct: 609  SILMRPNKQDNILVNVDAKCRDFVPNMVPPGYAND-----MEANDGWLVIRNSEVMCGLM 663

Query: 522  GKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELS 581
             K+T+G+G KD ++ V+LRDYG  A    MNRL+KLSAR++ N GFSIGI DV P +EL+
Sbjct: 664  DKSTVGSGKKDSIFYVILRDYGPDAAVVAMNRLSKLSARYLTNMGFSIGISDVYPSEELN 723

Query: 582  DKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGS 641
              K +LI+  Y  C   I+ +    L+   G    +TLEA ++  L+++R  AGK C+ +
Sbjct: 724  KSKARLIAAAYAECEQLIESFKNNTLEKSTGLSMEETLEAKLSGKLSQVRGAAGKECLRT 783

Query: 642  LPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAA 701
            L   +SPL+M+  GSKGS IN++QMVA VGQQ +GG R   GF DR+LPHFP+ +K+P A
Sbjct: 784  LYASSSPLVMANSGSKGSAINVAQMVALVGQQIIGGSRVQEGFQDRTLPHFPKHSKQPPA 843

Query: 702  KGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSV 761
            KGFVANSF++GL+  EF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD++V
Sbjct: 844  KGFVANSFFTGLTPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTV 903

Query: 762  RNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIV 821
            R +GG IVQF +G DG+DP +MEG +  P+NF R   + +       +R L P +V+   
Sbjct: 904  RTSGGGIVQFQFGADGLDPLDMEG-NAVPVNFKRTWTQAETLTWDNEERSLLPFEVTGQC 962

Query: 822  EKQLAAY---------------GKESCSE----------AFLNSLRKFFEGQQDKLDKK- 855
             + LA +               G +  S+           FL ++ KF   +   + K  
Sbjct: 963  TEHLATFKAKFSRFGLRNGEPLGYDDASDYGVDEHDGGREFLAAVNKFIGEKASHMAKAR 1022

Query: 856  -----IKFVED-----IGWDDKSQILEE--VTHKTSGITEKQLEVFIQTCFSRYRVKRVE 903
                   FV+D     I +D+  +  E     ++ + +++  L+ F + C  +Y   +VE
Sbjct: 1023 TKAGLHDFVQDPKVTGILYDENDENDESRAYVNQVAKVSKTTLKKFCELCLEKYSRAKVE 1082

Query: 904  AGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAE 963
             G A+GA+GAQSIGEPGTQMTLKTFHFAGVA MN+T GVPRIKEIIN +K I+TP +   
Sbjct: 1083 PGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMNLTAGVPRIKEIINASKTIATPFVKCP 1142

Query: 964  LECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADI 1023
            L  + + + AR+VK R+EKT L +V    + + ++R A I +A+D E + +  + +  + 
Sbjct: 1143 LLNDKDLDVARLVKARMEKTYLHEVLHFAEDMWSARSAVICLAVDTEYLVNRQIEVTVEN 1202

Query: 1024 VKESIVQTPKIKLKQQHIKVLDFRKLEIF---------------------PPVDK--SKI 1060
            +  +I++  K+K+K + + V   +   IF                     P +D+  S +
Sbjct: 1203 IATTILKNKKLKVKSEDLNV---KGKCIFIRVTHDGSAPTTARGTAAKGKPTLDEGGSDL 1259

Query: 1061 HFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMG 1120
               ++ LK  +P + + G     R +I   E          EK +Y ++VEG GL+A +G
Sbjct: 1260 LLRVHHLKRAIPELAISGYPEATRAIINTSEH---------EKPEYTVVVEGYGLRACIG 1310

Query: 1121 AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFR 1180
             EG+DG K KSN + E++  LGIEAAR  I +EI   M    M ID RHM LLAD+MT++
Sbjct: 1311 TEGVDGTKVKSNSVMEMRDVLGIEAARYTIANEIATVMA--DMDIDPRHMQLLADVMTYK 1368

Query: 1181 GEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
            GEVLGITRFG+ KM  SVL LASFEKT DHLF+A+   + DRIEGVS            T
Sbjct: 1369 GEVLGITRFGLSKMRDSVLQLASFEKTPDHLFDAAAGMKTDRIEGVS------------T 1416

Query: 1241 GILK-IRQRDAVPPMLK 1256
            G  K +RQ D  P  LK
Sbjct: 1417 GAFKVVRQLDLTPDHLK 1433


>gi|261196045|ref|XP_002624426.1| DNA-directed RNA polymerase III [Ajellomyces dermatitidis SLH14081]
 gi|239587559|gb|EEQ70202.1| DNA-directed RNA polymerase III [Ajellomyces dermatitidis SLH14081]
          Length = 1456

 Score = 1079 bits (2790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 589/1299 (45%), Positives = 815/1299 (62%), Gaps = 87/1299 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKVT 59
            +R P ++ LR+  + K I ++C     K   C RC  +NG+VKKA  + L I H++ +  
Sbjct: 138  LRRPGIDNLRRMQIAKKINERCR----KTRTCYRCNAVNGVVKKAGTSALKITHEKFRAF 193

Query: 60   ESL---------------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
             +                Q F  A     + +     A   L+P+ VL LF+ ++D DCE
Sbjct: 194  NASSSVKKIPPPSKVVFDQSFEEAKKSNPDIEKHFKKAHDDLHPLRVLKLFRSVSDKDCE 253

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP+ IRPSV  + + S E+D+T +L  IIQ+N +L+  L
Sbjct: 254  LLGLNPEEARPEVFLWQYIPAPPVCIRPSVGQEAA-STEDDLTAKLGDIIQSNINLKNAL 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
             +       +  W+ +Q+++A YINSDV G+       +P+ GF QRLKGKQGRFRGNLS
Sbjct: 313  YKGAPVQTIIECWDYMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++ RTVISPDPNL++ EVA+P  +A  +TYPE+V+ +N EKLRQ I+NG   +PG
Sbjct: 372  GKRVDFSARTVISPDPNLRVDEVAVPQLIAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 431

Query: 282  ARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +  +  +    + +G   N +A +L+ G IV+RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYVFKKSQNFKMNLKFGN-PNLVANDLEEGDIVERHIEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491  FAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++++ QDF+T++++++ KD FYDR AF+ +C YM     R DLP P+++KP  LWTGKQ
Sbjct: 551  PIISAIQDFITAAYMLSSKDVFYDRKAFTHICLYMLQSDTRFDLPPPSVIKPQMLWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F+VL+RP+    V VNL    + +       +G        +  NDG++  RNSE++ G
Sbjct: 611  IFNVLMRPNKQSPVLVNLDAACRGFKA----PKGTPR----DLDANDGWLCIRNSEVMCG 662

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K+T+G+G KD ++ V+LRD+G    +  MNRL++LSARW  N GFSIGI DV P  +
Sbjct: 663  VMDKSTIGSGKKDSVFYVMLRDFGPEVAAEGMNRLSRLSARWFTNMGFSIGITDVYPGDK 722

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L ++K  ++ + Y  C+  I+ +  GKL+  PGCD   T+E  I+ IL+++R+ AG  C+
Sbjct: 723  LLEEKSHIVEDAYAQCDEVIQLFRTGKLEKAPGCDEQMTMENTISGILSKVRQQAGAICI 782

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN++QMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P
Sbjct: 783  AELSRWNSPLIMATSGSKGSDINVAQMVALVGQQIIGGQRVQDGFQDRTLPHFPKHARQP 842

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AKGFV NSF+SGL+ TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD+
Sbjct: 843  PAKGFVRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDD 902

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +MEG++  P++FDR     + T      + L P ++  
Sbjct: 903  TVRNSSSNIVQFQYGDDKLDPVDMEGRA-RPVHFDRTFTHCEVTTFDNSDKGLLPDEIIT 961

Query: 820  IVEKQLA-AYGKESCSEAF----------------LNSLRKFFEGQQDKLDKKIKFVEDI 862
            + +  LA A  K +  +                  L S R F +  +D +  K + +  I
Sbjct: 962  LCQNLLAPARAKLTRFDLLGKNLDYNDRSDHGIDQLESARDFLQSIEDYVRAKAERLRAI 1021

Query: 863  GWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQ 922
              D  ++        T+ ++   L  FI  C ++Y+  +VE G A+GA+GAQSIGEPGTQ
Sbjct: 1022 --DGGTKRRGRGIDHTAKVSTNALTSFITACLTKYKRAQVEPGHAVGAVGAQSIGEPGTQ 1079

Query: 923  MTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEK 982
            MTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT EL    +  AA++VKGR+EK
Sbjct: 1080 MTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVITCELVNKHDLRAAQIVKGRVEK 1139

Query: 983  TLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIK-LKQQHI 1041
            T +  +   I+   T   A I I +D  TIQ+  L +N   +++ +V   K K  K   +
Sbjct: 1140 TFIRDIIYYIEEDWTGNEAYINIKIDFSTIQNLQLELN---LQDILVAIKKHKRFKSADL 1196

Query: 1042 KVLDF-RKLEIFPPVDKSKI--------------HFELYSLKNVLPMVIVKGIKTVERVV 1086
            K   F   + IF     ++               +  L  LK ++P + V G     R +
Sbjct: 1197 KFRSFGSHIHIFVDQHATRTALSKTEEAATGADPYIRLKHLKRLIPNIQVIGHPQCARAI 1256

Query: 1087 IAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAA 1146
            I   E                LLVEG GL+  M  +GI+G  T++N+I E +  LGIEAA
Sbjct: 1257 IRTDETNTTNT----------LLVEGYGLRDCMTTDGINGHHTRTNNIMEARTVLGIEAA 1306

Query: 1147 RICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEK 1206
            R  I+DEI+E MK   MSID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LASFEK
Sbjct: 1307 RTTIVDEISEVMK--DMSIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEK 1364

Query: 1207 TADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            TADHLF+A   GR D IEGVSECII+G  + LGTG +++
Sbjct: 1365 TADHLFDAGGAGRTDLIEGVSECIIVGKSVSLGTGAMEV 1403


>gi|162944844|gb|ABY20491.1| LD04803p [Drosophila melanogaster]
          Length = 1410

 Score = 1079 bits (2790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/1284 (45%), Positives = 808/1284 (62%), Gaps = 73/1284 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            + NP    L K  L   ++ K    A K  KCP CG  NG VKK   +L I+HD  K   
Sbjct: 154  LHNPNFSYLGKKALHVQMLAK----AKKVTKCPHCGSPNGGVKKGPGLLKILHDPYKGRK 209

Query: 58   ----VTESLQEFASAITHTKESKAAV-NVATYI-LNPVNVLFLFKRMTDTDCEVLYLSER 111
                 T ++ E   +    ++  + + N +T   L P+ VL LF+++   D  +L +   
Sbjct: 210  MDSLFTSNMNEMLRSTQTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSH 269

Query: 112  ---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               P+ LI+T + VPP  IRPSV+ +  + + E+D+T +   I+  N  +Q+ +      
Sbjct: 270  DAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKI 329

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                  W+ LQ+ VA Y +S++ G+P +M   +   G VQRLKGKQGRFR NLSGKRV++
Sbjct: 330  ELIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDF 389

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY 287
            +GRTVISPDPNL I +V +P+R+A+ILTYPERV+  NI  +R+ ++NGP  +PGA  ++ 
Sbjct: 390  SGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQ 449

Query: 288  PDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
               + +  + YG  R ++A ELK G +V+RHL DGD+VLFNRQPSLH+MSIMCHRA++ P
Sbjct: 450  RGSSFKKYLAYGN-REKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQP 508

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE  C PYNADFDGDEMN+H+PQTEEAR EAL+LMG Q+NL TPKNGEIL+A+T
Sbjct: 509  QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAAT 568

Query: 406  QDFLTSSFLITRKDTFYDRA-AFSLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS 462
            QDF+T  +L+T+K+ F  +  A  L  C++   D    + LP PA+LKP  LWTGKQ+FS
Sbjct: 569  QDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIKLPPPALLKPRRLWTGKQMFS 628

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            +L+RP+ + +V +N+  K + Y+            R + +C ND +++ RNSEL+ G + 
Sbjct: 629  LLMRPNDDSQVRLNMVNKSRNYT------------RNKDLCSNDSWIHIRNSELMCGVMD 676

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            KAT+G+G K  ++ +LLRD+G    +  M RLA++++ ++ N GFS GI DV P K+L  
Sbjct: 677  KATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSFGISDVTPSKKLLQ 736

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K  L++  Y  CN  I+    G LQ +PGC   +TLE+V+   L+ IRE A K C   L
Sbjct: 737  HKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCFAEL 796

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NS LIM+  GSKGS INISQM+ACVGQQ++ G+R PNGF +R+LPHF R +  PAA+
Sbjct: 797  HPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIPAAR 856

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFV NSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+K LEDL + YD +VR
Sbjct: 857  GFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVR 916

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            NA   +V  +YG DG+DP +ME ++ +P++       ++A  P    R L+ +++SE +E
Sbjct: 917  NAVNEMVDTIYGGDGLDPVSMETRN-KPVDLVHQYDNLRAQHPQGKDRPLNAEEMSEALE 975

Query: 823  KQLAAYGKESCSEAF-------LNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVT 875
              L         + F       +N++ K     Q + +K I                ++ 
Sbjct: 976  TLLRTPEFAEARDDFKLDVRNHINTVSKRIGQLQKRYEKCI----------------DLC 1019

Query: 876  HKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVAS 935
            H+   +T +QL  F++    RY     E GTA+GAI AQSIGEPGTQMTLKTFHFAGVAS
Sbjct: 1020 HQIECLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVAS 1079

Query: 936  MNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIV 995
            MNITQGVPRI EIIN  K ISTPIITAELE   +   AR VK RIEKT L +++  +++V
Sbjct: 1080 MNITQGVPRIVEIINATKTISTPIITAELENCHSMEFARQVKARIEKTTLAELSSYVEVV 1139

Query: 996  MTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL--DFRKLEIFP 1053
                   + I +DM  I+   L I+ D +  SI+++ ++++K   ++V+    R +    
Sbjct: 1140 CGPYSCYLAIGVDMARIKLLGLHIDLDTIVFSILKS-RMRVKPTQVEVVASQSRIVVRVE 1198

Query: 1054 PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGT 1113
                S I+ EL  L   L  V+V G+  + R VIA        V +  +   Y+L +EG 
Sbjct: 1199 ATRTSTINAELARLALSLQNVVVAGLPNINRAVIA--------VDDARQPPTYKLCIEGY 1250

Query: 1114 GLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1173
            GL+ V+   G+ G +T+SN+I E+ QTLGIEAAR  I+ EI E M+ HGMS+D RH+MLL
Sbjct: 1251 GLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLL 1310

Query: 1174 ADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMG 1233
            A  MT RGEVLGITR G+ KM +SV  LASFEKTADHLF+A+  G+ D I GVSE II+G
Sbjct: 1311 ASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILG 1370

Query: 1234 IPMPLGTGILKIRQRD---AVPPM 1254
            +P  +GTGI K+ Q+     VPP+
Sbjct: 1371 MPACIGTGIFKLLQQHEDKQVPPI 1394


>gi|321451320|gb|EFX63013.1| hypothetical protein DAPPUDRAFT_67470 [Daphnia pulex]
          Length = 1391

 Score = 1079 bits (2790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/1272 (46%), Positives = 809/1272 (63%), Gaps = 51/1272 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            +R   +  LRK  L K I + C  +     +CP C  +NG+VKK   +L I H++ +   
Sbjct: 135  LRKQNLPYLRKQALRKQIQELCKEVK----RCPHCDELNGVVKKC-GMLKISHEKFRNAK 189

Query: 58   ---VTESLQEFASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYLSE--- 110
               +   L  + +A+   KE +  ++ A   +LNP+ V+ LF+R+ D D + + ++    
Sbjct: 190  KPIIEAELVAYDNAVQFNKEIEPMLSSALIKMLNPIEVMHLFERIPDEDVQYILMNSEHG 249

Query: 111  RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             P+ +I+T + VPP  IRPSV+ D  S +NE+D+T +L  I+  N  + +  +    +  
Sbjct: 250  HPKDMILTRLPVPPACIRPSVMSDLKSGTNEDDLTMKLTEIVFLNDVIVKHRLSGAKSQI 309

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             L  W  LQ + A YINS++ G+PF MQ  +P  G VQRLKGKQGRFRGNLSGKRV+++G
Sbjct: 310  ILEDWYFLQFQCALYINSELSGIPFDMQPKKPSRGLVQRLKGKQGRFRGNLSGKRVDFSG 369

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIR--Y 287
            RTVISPDPNL+I +V +P  +A+ILTYP  V++ NIE +R+ ++NGPD +PGA  ++   
Sbjct: 370  RTVISPDPNLRIDQVGVPEMVAKILTYPTLVNEANIELMRKLVRNGPDIHPGAIFLKKKV 429

Query: 288  PDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
               T  + +G  R  LA  LK G +++RH+ D D+VLFNRQPSLH++SIMCHRA+I+P R
Sbjct: 430  SKLTISLKHGN-RETLARNLKRGDVIERHMMDEDIVLFNRQPSLHKLSIMCHRAKILPHR 488

Query: 348  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQD 407
            T RFNE VC PYNADFDGDEM +H PQTEEAR EAL+LM  ++NL TP+NGE+L+A+ QD
Sbjct: 489  TFRFNECVCTPYNADFDGDEMTLHFPQTEEARAEALILMTNKSNLVTPRNGELLIAAIQD 548

Query: 408  FLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRV-DLPTPAILKPVELWTGKQLFSVL 464
            F+T ++L+T KD F+DRA    M   M  GD ++ V  LP P I KP  LW+GKQ+FS++
Sbjct: 549  FITGAYLLTLKDAFFDRAKTCQMVASMLAGDEVNMVIKLPPPCIQKPAALWSGKQIFSLI 608

Query: 465  IRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKA 524
            +RP+   R+ VNL  K K YS K            E  C NDGF+  RNSE+++G + K+
Sbjct: 609  LRPNPGDRIKVNLRTKGKEYSKK-----------NEEFCVNDGFLLVRNSEVLAGCVDKS 657

Query: 525  TLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKK 584
            T+G+G+K  ++ VLLRDYG       M +L ++++ ++ N GFSIGI DV P K L  +K
Sbjct: 658  TIGSGSKINIFYVLLRDYGEDFAIQAMWKLGRVASYYMMNRGFSIGIGDVTPGKTLLKEK 717

Query: 585  GKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW 644
             KL+   +  C+  I+    G+    PGC+  ++LE+ I   L+ IR+ AG+ C   L  
Sbjct: 718  QKLLDSGFSKCDEYIRLLTIGQSPCLPGCNVEESLESKIHKELSGIRDQAGEVCKKELHP 777

Query: 645  RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 704
             NSPL+MS+ GSKGS INISQM+ACVGQQ++ G+R PNGF DRSLPHF R +K PAAKGF
Sbjct: 778  SNSPLVMSKSGSKGSYINISQMIACVGQQALNGKRVPNGFEDRSLPHFKRHSKIPAAKGF 837

Query: 705  VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
            V+NSFYSGLS TE FFH M GREGLVDTAVKTA+  YM RRLIK LEDL  QYD++VRN+
Sbjct: 838  VSNSFYSGLSPTELFFHAMSGREGLVDTAVKTAEPMYMQRRLIKFLEDLCCQYDSTVRNS 897

Query: 765  GGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQ 824
             G I+QF+YG DG+DP  ME K   P++F R    VKA  P   +  L   ++    +  
Sbjct: 898  AGEIIQFVYGGDGLDPTYMEAKD-RPVDFQRGFEHVKAASPFPDEEPLDDIELKGAFDAI 956

Query: 825  LAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEK 884
            +  +  +   +   + LR F E Q     K+IK V DI + + ++    V      IT  
Sbjct: 957  METHTFKKLGDDIKHELRVFVESQV----KRIKSVRDI-YKNDARASNPVEKHLERITVG 1011

Query: 885  QLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 944
            QL  F      +Y   ++E GTA+GA+ AQSI EP T+MTLK F  AGVASMN TQGV R
Sbjct: 1012 QLVEFCDFAKEKYERAKIEPGTAVGALCAQSIAEPCTKMTLKPFQLAGVASMNTTQGVHR 1071

Query: 945  IKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIV 1004
            + EIIN +K ISTP+I+ +L  +D+   AR VKGRIEKT LG+V +  + V       + 
Sbjct: 1072 LIEIINASKAISTPVISTQLLKDDDPEYARRVKGRIEKTTLGEVTQFFEEVYLPSGCFVK 1131

Query: 1005 IALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEI-FPPVDKSKIHFE 1063
            I LDM  I+   L ++A  ++ S+  T K+KL    + V + + + I   P  KS  +  
Sbjct: 1132 IKLDMNRIRLLKLEVDASSIRSSLC-TGKLKLNPSTVLVFNEKVIYIQCKPTTKSSRYHV 1190

Query: 1064 LYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEG 1123
            L  + N LP V++KG+  V RVVI         + +     ++ LLVEG  ++ VM   G
Sbjct: 1191 LQHVMNELPKVVIKGLTDVSRVVI--------NIDDRRNPPRHSLLVEGNNMREVMATYG 1242

Query: 1124 IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
            + G  T SN+I EV  TLGIEAA+  I  EI  TM++HGMS+D+RH+ LL+DLM+ RGE+
Sbjct: 1243 VQGSSTTSNNILEVFSTLGIEAAKSMIAKEIKFTMESHGMSVDRRHVALLSDLMSCRGEI 1302

Query: 1184 LGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGIL 1243
            LGITR G+ KM +SVLMLASFE T+DHLF+A+  G++D + GVSECIIMG+PM +GTG  
Sbjct: 1303 LGITRHGLAKMKQSVLMLASFESTSDHLFDAAYYGQEDEVTGVSECIIMGVPMAIGTGAF 1362

Query: 1244 KIRQR--DAVPP 1253
            K+  +   +VPP
Sbjct: 1363 KLLYKTGKSVPP 1374


>gi|281360912|ref|NP_001096987.2| CG17209 [Drosophila melanogaster]
 gi|272506113|gb|ABW09418.2| CG17209 [Drosophila melanogaster]
          Length = 1383

 Score = 1078 bits (2788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/1284 (45%), Positives = 808/1284 (62%), Gaps = 73/1284 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            + NP    L K  L   ++ K    A K  KCP CG  NG VKK   +L I+HD  K   
Sbjct: 127  LHNPNFSYLGKKALHVQMLAK----AKKVTKCPHCGSPNGGVKKGPGLLKILHDPYKGRK 182

Query: 58   ----VTESLQEFASAITHTKESKAAV-NVATYI-LNPVNVLFLFKRMTDTDCEVLYLSER 111
                 T ++ E   +    ++  + + N +T   L P+ VL LF+++   D  +L +   
Sbjct: 183  MDSLFTSNMNEMLRSTQTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSH 242

Query: 112  ---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               P+ LI+T + VPP  IRPSV+ +  + + E+D+T +   I+  N  +Q+ +      
Sbjct: 243  DAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKI 302

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                  W+ LQ+ VA Y +S++ G+P +M   +   G VQRLKGKQGRFR NLSGKRV++
Sbjct: 303  ELIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDF 362

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY 287
            +GRTVISPDPNL I +V +P+R+A+ILTYPERV+  NI  +R+ ++NGP  +PGA  ++ 
Sbjct: 363  SGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQ 422

Query: 288  PDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
               + +  + YG  R ++A ELK G +V+RHL DGD+VLFNRQPSLH+MSIMCHRA++ P
Sbjct: 423  RGSSFKKYLAYGN-REKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQP 481

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE  C PYNADFDGDEMN+H+PQTEEAR EAL+LMG Q+NL TPKNGEIL+A+T
Sbjct: 482  QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAAT 541

Query: 406  QDFLTSSFLITRKDTFYDRA-AFSLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS 462
            QDF+T  +L+T+K+ F  +  A  L  C++   D    + LP PA+LKP  LWTGKQ+FS
Sbjct: 542  QDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIKLPPPALLKPRRLWTGKQMFS 601

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            +L+RP+ + +V +N+  K + Y+            R + +C ND +++ RNSEL+ G + 
Sbjct: 602  LLMRPNDDSQVRLNMVNKGRNYT------------RNKDLCSNDSWIHIRNSELMCGVMD 649

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            KAT+G+G K  ++ +LLRD+G    +  M RLA++++ ++ N GFS GI DV P K+L  
Sbjct: 650  KATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSFGISDVTPSKKLLQ 709

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K  L++  Y  CN  I+    G LQ +PGC   +TLE+V+   L+ IRE A K C   L
Sbjct: 710  HKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCFAEL 769

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NS LIM+  GSKGS INISQM+ACVGQQ++ G+R PNGF +R+LPHF R +  PAA+
Sbjct: 770  HPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIPAAR 829

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFV NSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+K LEDL + YD +VR
Sbjct: 830  GFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVR 889

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            NA   +V  +YG DG+DP +ME ++ +P++       ++A  P    R L+ +++SE +E
Sbjct: 890  NAVNEMVDTIYGGDGLDPVSMETRN-KPVDLVHQYDNLRAQHPQGKDRPLNAEEMSEALE 948

Query: 823  KQLAAYGKESCSEAF-------LNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVT 875
              L         + F       +N++ K     Q + +K I                ++ 
Sbjct: 949  TLLRTPEFAEARDDFKLDVRNHINTVSKRIGQLQKRYEKCI----------------DLC 992

Query: 876  HKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVAS 935
            H+   +T +QL  F++    RY     E GTA+GAI AQSIGEPGTQMTLKTFHFAGVAS
Sbjct: 993  HQIECLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVAS 1052

Query: 936  MNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIV 995
            MNITQGVPRI EIIN  K ISTPIITAELE   +   AR VK RIEKT L +++  +++V
Sbjct: 1053 MNITQGVPRIVEIINATKTISTPIITAELENCHSMEFARQVKARIEKTTLAELSSYVEVV 1112

Query: 996  MTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL--DFRKLEIFP 1053
                   + I +DM  I+   L I+ D +  SI+++ ++++K   ++V+    R +    
Sbjct: 1113 CGPYSCYLAIGVDMARIKLLGLHIDLDTIVFSILKS-RMRVKPTQVEVVASQSRIVVRVE 1171

Query: 1054 PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGT 1113
                S I+ EL  L   L  V+V G+  + R VIA        V +  +   Y+L +EG 
Sbjct: 1172 ATRTSTINAELARLALSLQNVVVAGLPNINRAVIA--------VDDARQPPTYKLCIEGY 1223

Query: 1114 GLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1173
            GL+ V+   G+ G +T+SN+I E+ QTLGIEAAR  I+ EI E M+ HGMS+D RH+MLL
Sbjct: 1224 GLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLL 1283

Query: 1174 ADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMG 1233
            A  MT RGEVLGITR G+ KM +SV  LASFEKTADHLF+A+  G+ D I GVSE II+G
Sbjct: 1284 ASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILG 1343

Query: 1234 IPMPLGTGILKIRQRD---AVPPM 1254
            +P  +GTGI K+ Q+     VPP+
Sbjct: 1344 MPACIGTGIFKLLQQHEDKQVPPI 1367


>gi|225554972|gb|EEH03266.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
            capsulatus G186AR]
          Length = 1456

 Score = 1078 bits (2788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/1299 (45%), Positives = 822/1299 (63%), Gaps = 87/1299 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKV- 58
            +R P ++ LR+  + K I ++C     K   C +C  +NG+VKKA  + L I H++ +  
Sbjct: 138  LRRPGIDNLRRMQIAKKINERCR----KTRTCYKCNAVNGVVKKAGTSALKITHEKFRAF 193

Query: 59   --TESLQE--------FASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCE 104
              + S+++        F  +    K+S   ++     A   L+P+ VL LF+ +++ DCE
Sbjct: 194  NASASVKKIPPPSKVVFDKSFEEAKKSNPDIDKHFKKAHDDLHPLRVLRLFRSVSNEDCE 253

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   +  PP+ IRPSV  + + S E+D+T +L  IIQ+N +L+  L
Sbjct: 254  LLSLNPEEARPEVFLWQYVPAPPVCIRPSVGQEAA-STEDDLTAKLGDIIQSNINLKNAL 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
            ++       +  W+ +Q+++A YINSDV G+       +P+ GF QRLKGKQGRFRGNLS
Sbjct: 313  IKGAPVQTIIECWDYMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL++ EVA+P  +A  +TYPE+V+ +N EKLRQ I+NG   +PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 431

Query: 282  ARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +  +  +    + +G   N +A EL+ G IV+RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYVLKKSQNFKMNLKFGN-PNLVANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491  FAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++++ QDF+T+++L++ KD FYDR  F+ +C YM +   R DLP P++LKP  LWTGKQ
Sbjct: 551  PIISAIQDFITAAYLLSSKDIFYDRKTFTHICLYMLESDTRFDLPPPSVLKPQILWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F+VL+RP+    V +NL    + +       +G        +  NDG++  RNSE++ G
Sbjct: 611  VFNVLMRPNKQSPVLINLDAACREFKA----PKGTPR----DLDANDGWLCIRNSEIMCG 662

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K+T+G+G KD ++ V+LRD+G    S  MNRL++LSARW+ N GFSIGI DV P ++
Sbjct: 663  VMDKSTIGSGKKDSVFYVMLRDFGPDVASEGMNRLSRLSARWLTNLGFSIGITDVYPGEK 722

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L ++K  ++   Y  C+  I+ +  GKL+  PGCD   T+E  I+ +L+++R+ AG+ C+
Sbjct: 723  LLEEKHHIVEHAYAQCDEVIQLFKNGKLEKAPGCDEQMTMENAISGLLSKVRQQAGEICI 782

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN++QMVA VGQQ +G +R  +GF DR+LPHFP+ A++P
Sbjct: 783  AELSRWNSPLIMATSGSKGSDINVAQMVALVGQQIIGNQRVQDGFQDRTLPHFPKHARQP 842

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AKGFV NSF+SGL+ TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD+
Sbjct: 843  PAKGFVRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDD 902

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQV-- 817
            +VRN+   IVQF YGDD +DP +MEG++ +P++FDR     + T      + L P ++  
Sbjct: 903  TVRNSSSNIVQFQYGDDKLDPVDMEGRA-KPVHFDRTFTHAEVTTFDNSDKGLLPDEIIT 961

Query: 818  ---------------SEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDI 862
                            +++ K+L    +       L S R F +  +D +  K + +  I
Sbjct: 962  LCQNLLAPERAKLARFDLLGKKLEYNDRSDHGIDQLESARDFLQSIEDYVCAKAEKLRSI 1021

Query: 863  GWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQ 922
                K Q  + V H T+ ++ + L  FI  C ++Y+  +VE G A+GA+GAQSIGEPGTQ
Sbjct: 1022 DSGTK-QRGKGVIH-TAKVSTRALTSFITACLTKYKRAQVEPGHAVGAVGAQSIGEPGTQ 1079

Query: 923  MTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEK 982
            MTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT EL    +  AA++VKGR+EK
Sbjct: 1080 MTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVITCELVNKQDLRAAQIVKGRVEK 1139

Query: 983  TLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCI----------------NADIVKE 1026
            T +  +   I+   T   A I I +D  TIQ+  L +                +AD+   
Sbjct: 1140 TFVRDIIYYIEEDWTGNEAYINIKIDFSTIQNLQLELTLQDILMAIKKHKRFKSADLKFR 1199

Query: 1027 SIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVV 1086
            S      I + QQ  +    +  E     D    +  L  LK ++P + V G     R +
Sbjct: 1200 SFGSHIHIFVDQQTTRTALSKTEEAATGADP---YIRLKHLKRLIPNIQVIGHPQCARAI 1256

Query: 1087 IAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAA 1146
            I   E                LLVEG GL+  M  +GI+G  T++N+I E +  LGIEAA
Sbjct: 1257 IRTDETNTTNT----------LLVEGYGLRDCMTTDGINGRHTRTNNIMETRAVLGIEAA 1306

Query: 1147 RICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEK 1206
            R  I+DEI E MK   M+ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LASFEK
Sbjct: 1307 RTTIVDEIGEVMK--DMAIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEK 1364

Query: 1207 TADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            TADHLF+A   GR D IEGVSECII+G  + LGTG +++
Sbjct: 1365 TADHLFDAGGAGRTDLIEGVSECIIVGKSVSLGTGAMEV 1403


>gi|384871708|gb|AFI25034.1| FI19733p1 [Drosophila melanogaster]
          Length = 1410

 Score = 1078 bits (2787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/1284 (45%), Positives = 808/1284 (62%), Gaps = 73/1284 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            + NP    L K  L   ++ K    A K  KCP CG  NG VKK   +L I+HD  K   
Sbjct: 154  LHNPNFSYLGKKALHVQMLAK----AKKVTKCPHCGSPNGGVKKGPGLLKILHDPYKGRK 209

Query: 58   ----VTESLQEFASAITHTKESKAAV-NVATYI-LNPVNVLFLFKRMTDTDCEVLYLSER 111
                 T ++ E   +    ++  + + N +T   L P+ VL LF+++   D  +L +   
Sbjct: 210  MDSLFTSNMNEMLRSTQTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSH 269

Query: 112  ---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               P+ LI+T + VPP  IRPSV+ +  + + E+D+T +   I+  N  +Q+ +      
Sbjct: 270  DAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKI 329

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                  W+ LQ+ VA Y +S++ G+P +M   +   G VQRLKGKQGRFR NLSGKRV++
Sbjct: 330  ELIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDF 389

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY 287
            +GRTVISPDPNL I +V +P+R+A+ILTYPERV+  NI  +R+ ++NGP  +PGA  ++ 
Sbjct: 390  SGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQ 449

Query: 288  PDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
               + +  + YG  R ++A ELK G +V+RHL DGD+VLFNRQPSLH+MSIMCHRA++ P
Sbjct: 450  RGSSFKKYLAYGN-REKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQP 508

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE  C PYNADFDGDEMN+H+PQTEEAR EAL+LMG Q+NL TPKNGEIL+A+T
Sbjct: 509  QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAAT 568

Query: 406  QDFLTSSFLITRKDTFYDRA-AFSLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS 462
            QDF+T  +L+T+K+ F  +  A  L  C++   D    + LP PA+LKP  LWTGKQ+FS
Sbjct: 569  QDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIKLPPPALLKPRRLWTGKQMFS 628

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            +L+RP+ + +V +N+  K + Y+            R + +C ND +++ RNSEL+ G + 
Sbjct: 629  LLMRPNDDSQVRLNMVNKGRNYT------------RNKDLCSNDSWIHIRNSELMCGVMD 676

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            KAT+G+G K  ++ +LLRD+G    +  M RLA++++ ++ N GFS GI DV P K+L  
Sbjct: 677  KATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSFGISDVTPSKKLLQ 736

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K  L++  Y  CN  I+    G LQ +PGC   +TLE+V+   L+ IRE A K C   L
Sbjct: 737  HKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCFAEL 796

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NS LIM+  GSKGS INISQM+ACVGQQ++ G+R PNGF +R+LPHF R +  PAA+
Sbjct: 797  HPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIPAAR 856

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFV NSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+K LEDL + YD +VR
Sbjct: 857  GFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVR 916

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            NA   +V  +YG DG+DP +ME ++ +P++       ++A  P    R L+ +++SE +E
Sbjct: 917  NAVNEMVDTIYGGDGLDPVSMETRN-KPVDLVHQYDNLRAQHPQGKDRPLNAEEMSEALE 975

Query: 823  KQLAAYGKESCSEAF-------LNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVT 875
              L         + F       +N++ K     Q + +K I                ++ 
Sbjct: 976  TLLRTPEFAEARDDFKLDVRNHINTVSKRIGQLQKRYEKCI----------------DLC 1019

Query: 876  HKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVAS 935
            H+   +T +QL  F++    RY     E GTA+GAI AQSIGEPGTQMTLKTFHFAGVAS
Sbjct: 1020 HQIECLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVAS 1079

Query: 936  MNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIV 995
            MNITQGVPRI EIIN  K ISTPIITAELE   +   AR VK RIEKT L +++  +++V
Sbjct: 1080 MNITQGVPRIVEIINATKTISTPIITAELENCHSMEFARQVKARIEKTTLAELSSYVEVV 1139

Query: 996  MTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL--DFRKLEIFP 1053
                   + I +DM  I+   L I+ D +  SI+++ ++++K   ++V+    R +    
Sbjct: 1140 CGPYSCYLAIGVDMARIKLLGLHIDLDTIVFSILKS-RMRVKPTQVEVVASQSRIVVRVE 1198

Query: 1054 PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGT 1113
                S I+ EL  L   L  V+V G+  + R VIA        V +  +   Y+L +EG 
Sbjct: 1199 ATRTSTINAELARLALSLQNVVVAGLPNINRAVIA--------VDDARQPPTYKLCIEGY 1250

Query: 1114 GLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1173
            GL+ V+   G+ G +T+SN+I E+ QTLGIEAAR  I+ EI E M+ HGMS+D RH+MLL
Sbjct: 1251 GLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLL 1310

Query: 1174 ADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMG 1233
            A  MT RGEVLGITR G+ KM +SV  LASFEKTADHLF+A+  G+ D I GVSE II+G
Sbjct: 1311 ASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILG 1370

Query: 1234 IPMPLGTGILKIRQRD---AVPPM 1254
            +P  +GTGI K+ Q+     VPP+
Sbjct: 1371 MPACIGTGIFKLLQQHEDKQVPPI 1394


>gi|189192955|ref|XP_001932816.1| DNA-directed RNA polymerase III subunit RPC1 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187978380|gb|EDU45006.1| DNA-directed RNA polymerase III subunit RPC1 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 1471

 Score = 1078 bits (2787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/1333 (45%), Positives = 819/1333 (61%), Gaps = 118/1333 (8%)

Query: 4    PKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA-VLGIIHDRSKV---- 58
            P M+ LRK  + K I++ C     K   CP C  + G V+K     L IIH+R       
Sbjct: 141  PDMDTLRKGAVTKKIIEDCR----KKKTCPYCNALQGTVRKVPGHPLKIIHNRYDAFNRS 196

Query: 59   -----------TESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLY 107
                        E  Q F +A +   +    V  A   ++P+  L LFK+++  DCE+L 
Sbjct: 197  TAKTKKPPPGKLEFDQSFDTAKSANPDVDKHVKKAVDDMHPLRALNLFKKISPEDCELLA 256

Query: 108  L---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEA 164
            +     RPE LI   + VPP+A+RPSV+ +G  + E+D+T ++  I   ++ ++  L   
Sbjct: 257  MVPEDARPEMLIWEYMPVPPVALRPSVMQEGG-ATEDDVTNKIGDICHISSIIRAGLARG 315

Query: 165  NSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKR 224
                  +  W+ LQ+++A YINSD  G+     + + + GF QRLKGK GRFR NLSGKR
Sbjct: 316  FPLQILMEQWDFLQLQIAMYINSDAPGLK-QQGLQKTMRGFSQRLKGKGGRFRQNLSGKR 374

Query: 225  VEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARM 284
            V+++GRTVI PDPNL I EVA+P R+A+ LTYPE+V+ +NIEKLR+ ++NG  KYPGA  
Sbjct: 375  VDFSGRTVIGPDPNLSIDEVAVPQRIAKNLTYPEKVTRYNIEKLRRLVRNGAQKYPGANY 434

Query: 285  IRYPDGTAR-----VLYGKFRNQ------LAVELKSGCIVDRHLEDGDVVLFNRQPSLHR 333
            I    G  +      L    RN+       A  LK G IV+RH+EDGD+VLFNRQPSLH+
Sbjct: 435  ILTGQGPNKDPIKISLIALSRNKGERLDFTAKRLKIGDIVERHIEDGDIVLFNRQPSLHK 494

Query: 334  MSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLC 393
            +SI+ HRA+I PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEA  LMGV+ NL 
Sbjct: 495  LSILSHRAKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEATELMGVKYNLA 554

Query: 394  TPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG----------MDRVDL 443
            TPKNG  ++A+ QDF+T+++L++ K+ F+DR  F  +  YM +G             +D+
Sbjct: 555  TPKNGTPIIAAIQDFITAAYLLSNKNNFFDRKTFCQIVNYMFNGEGAFDPDTGKKHPIDI 614

Query: 444  PTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMC 503
            P P I KP  LWTGKQ+F++L+RP+   RV +NL    K +      T G    +   + 
Sbjct: 615  PPPVIWKPQALWTGKQVFNLLMRPNKGCRVLINLEAACKQFKG----TPG----QAPDLN 666

Query: 504  PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA-HATSGCMNRLAKLSARWI 562
             ND ++  RNSE++ G + KAT+G+G KD ++ V++RD+G  HA  G MNRL+KLSARW+
Sbjct: 667  ENDAYLVIRNSEVMCGVMDKATVGDGKKDSVFYVMMRDFGPDHAVQG-MNRLSKLSARWL 725

Query: 563  GNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAV 622
             N+GFS+GI DV P  +L+ KK  L+ E Y  C+  I +++ GKLQ   GCDA QT+E  
Sbjct: 726  TNNGFSLGISDVTPGDKLNMKKQLLVQEAYAQCDKLISDFSNGKLQPDAGCDAEQTMENR 785

Query: 623  ITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPN 682
            I  IL+ +R+ AG+ C   L   NSPL+M++CGSKGS IN+SQMVA VGQQ +GG R  +
Sbjct: 786  IGGILSGVRQAAGEICFEELSRWNSPLLMAKCGSKGSNINVSQMVASVGQQMIGGARVAD 845

Query: 683  GFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYM 742
            GF  R+LPHFP+ A++PA+KGFV+NSF+SGL+ +EF FH M GREGLVDTAVKTA+TGYM
Sbjct: 846  GFQHRTLPHFPKAARQPASKGFVSNSFFSGLTPSEFIFHAMSGREGLVDTAVKTAETGYM 905

Query: 743  SRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA 802
            SRRL+K+LEDLS  YD++VRN+ G +VQF YGDD +DP +MEGK+ +P++FDR       
Sbjct: 906  SRRLMKSLEDLSAHYDDTVRNSSGTVVQFQYGDDNLDPVDMEGKA-KPVHFDRTFSHAVT 964

Query: 803  TCPPAGQRYLSPQQVSEIVEKQLAA-------YGKESCSEAFL-----------NSLRKF 844
            +     +  L+PQ+V +I E +L         Y  +  ++               SLR F
Sbjct: 965  STWDNAESSLTPQEVRDITESKLNTERNKYTRYKLDGVTQLDYRDPSDDGIDQHESLRDF 1024

Query: 845  FEGQQDKLDKKIKFVED-IGW--------DDKSQILEEVTHKT-----SGITEKQLEVFI 890
             +  QD + KK K +ED + W        +D  Q   +    +     + I+   L+ FI
Sbjct: 1025 LDTVQDYIFKKAKKLEDTLTWLGVVQTSVEDGKQSPADAEKYSLADGIAKISRSALDTFI 1084

Query: 891  QTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN 950
              C+S+Y   RV+ G A+GAIGAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN
Sbjct: 1085 ALCWSKYHRSRVQPGHAVGAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN 1144

Query: 951  GAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDME 1010
             +  ISTP+I  ELE   +E  AR VK RIEKT L  V + ++ V     A + + +D +
Sbjct: 1145 ASSTISTPVIDCELENKVSERVAREVKARIEKTYLRDVIRYVEDVWYPEGAYVAMRIDWD 1204

Query: 1011 TIQDAHLCINADIVKESIVQTPKIK---------LKQQHIKV----LDFRKLEIFPPVDK 1057
            TIQ   + +    +K +I     +K         + Q++I+V     D  K     P   
Sbjct: 1205 TIQKLFIDVKPHEIKAAISAHKPLKWGKAGAAVHVGQKYIRVEVPDPDATKKR---PAKT 1261

Query: 1058 SKIHFELY----SLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKK-KYRLLVEG 1112
            S+ H   +     +K ++P V++KG     R VI      K++   N + + + +LLVEG
Sbjct: 1262 SRNHKSFFERVQQVKALIPDVVIKGYPDCTRAVI------KKETSPNAQGQYECKLLVEG 1315

Query: 1113 TGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMML 1172
             GL+  M   GI   KT SN+I EV+  LGIEAAR  I+ EI   M    M ID RHM L
Sbjct: 1316 YGLRNCMTTPGIVPYKTVSNNIMEVKTVLGIEAARATIVREIGSVMG--NMDIDPRHMQL 1373

Query: 1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232
            LAD+MTF+GEV GITRFG+QK   SVL LASFEKT DHLF A+  G+ D I+GVSECIIM
Sbjct: 1374 LADVMTFKGEVFGITRFGLQKTRDSVLQLASFEKTPDHLFEAAARGKTDTIDGVSECIIM 1433

Query: 1233 GIPMPLGTGILKI 1245
            G  + LGTG +++
Sbjct: 1434 GQSVKLGTGSMQV 1446


>gi|328710964|ref|XP_001945328.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
            [Acyrthosiphon pisum]
          Length = 1366

 Score = 1077 bits (2785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/1253 (47%), Positives = 795/1253 (63%), Gaps = 58/1253 (4%)

Query: 14   LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKV----TESLQEFASAI 69
            + K + K+    A K   CP C  I G VKK   +L I +DR +     TE+  +  +  
Sbjct: 143  MRKKVFKEVHAKAKKVQICPFCSDIVGQVKKN-GILKISYDRYRYKKPGTEAESKLCALN 201

Query: 70   THTKESKAAVNVATYI----LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAV 122
               K +K   ++  Y+    LNP  VL L   +   D  +L ++     P  L++T + V
Sbjct: 202  DVVKYNKEVESMRNYLFNENLNPQEVLRLLLSIPYEDIILLGMNPEVSNPGWLLMTRMLV 261

Query: 123  PPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEV 181
            PP  IRPS + D  S +NE+D+T +L  ++  N  + +              WE LQ+  
Sbjct: 262  PPNCIRPSAVSDIRSGTNEDDLTLKLSEVLFINDVIVKHKQSGAKPQLLHEDWEYLQLHC 321

Query: 182  AQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKI 241
            A YINSD+ GV  +M   +   G VQRLKGK GRFRGNLSGKRV++T R+VISPDPNL+I
Sbjct: 322  ALYINSDLSGVSRTMMPKKIARGCVQRLKGKHGRFRGNLSGKRVDFTARSVISPDPNLRI 381

Query: 242  TEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRN 301
             EV +P+RMA+ILTYP++V   NIE +R+ + NGP+ +PGA  +    G+    Y +F N
Sbjct: 382  EEVGVPVRMAKILTYPQKVCPANIELMRKLVMNGPEIHPGANFVEL-QGSKLKKYLRFGN 440

Query: 302  QLAV--ELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
            + A+  +LK G IV+RHL DGD+VLFNRQPSLHR+SIMCHRA+++   TLRFNE VC PY
Sbjct: 441  RPAIAKDLKIGDIVERHLSDGDIVLFNRQPSLHRLSIMCHRAKVLEHNTLRFNECVCTPY 500

Query: 360  NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
            NADFDGDEMN+H+PQTEEAR EA LLM  ++NL TP+NG+IL+A+TQDF+T ++L+T K+
Sbjct: 501  NADFDGDEMNLHLPQTEEARAEAALLMINKSNLVTPRNGDILIAATQDFITGAYLLTHKN 560

Query: 420  TFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
            TF ++   S +  ++  G D    + LP PAILKP +LWTGKQ+ S+++RP     V  N
Sbjct: 561  TFLNQRDSSRLIGWLMSGDDINIDLTLPRPAILKPHKLWTGKQILSIIMRPSKKCLVKAN 620

Query: 477  LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
            L  K K+Y+            R E  C  D +VY +NSEL++G + KATLG+G+K  ++ 
Sbjct: 621  LRCKGKSYT------------RDEEFCFKDSYVYIKNSELLAGTMDKATLGSGSKSNIFY 668

Query: 537  VLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCN 596
            VLL D+G+      M RL +L++ ++   GFSIGI DV P  +L   K +L+     +C 
Sbjct: 669  VLLADWGSDVCCKVMWRLTRLTSYFLMLRGFSIGIGDVTPSDDLLQSKNELVINGNALCE 728

Query: 597  VKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
              I+  N  +L+ +PGC+  +TLEA I   L+ IR+  GKAC+  L + N PL+M+  GS
Sbjct: 729  ENIRLRNSKELKCQPGCNMDETLEANILKQLSGIRDSVGKACLLELHFTNGPLVMALSGS 788

Query: 657  KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
            KGS INISQM+ACVGQQ++ G R P+GF  RSLPHF R +K P AKGFV NSFYSGL+ T
Sbjct: 789  KGSNINISQMIACVGQQALSGHRVPDGFESRSLPHFKRFSKTPEAKGFVENSFYSGLTPT 848

Query: 717  EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDD 776
            EFFFHTMGGREGLVDTAVKTA+TGYM RRL+K+LEDL + YDN+VRNA G ++QF +G D
Sbjct: 849  EFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVHYDNTVRNAFGDVIQFEFGGD 908

Query: 777  GMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEA 836
             +DP   EG  G P++F R+   V A  P   +  L  +++ +I E  L +   ++ +  
Sbjct: 909  SLDPTYTEG-DGVPVDFKRVYFNVTANYPCTDECTLDSEEILKITEDVLLSENFQNVNTI 967

Query: 837  FLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSR 896
            F   LR F +   + + +  K      W      L     K   IT  QL  F  TC ++
Sbjct: 968  FTEELRNFGKNLANNMAELRK-----KW------LNLEVSKIQRITSTQLIKFYVTCLTK 1016

Query: 897  YRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRIS 956
            Y    +E GT +GAI AQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN +K IS
Sbjct: 1017 YMAAVIEPGTPVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINSSKNIS 1076

Query: 957  TPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAH 1016
            TPIITA LE + ++  AR+VK RIE+T L +V   I +V+ S    ++I +DM  I+   
Sbjct: 1077 TPIITAYLENDKDKEFARIVKARIEQTTLTEVCSFIDVVLDSAECYLLIHIDMNRIKLLQ 1136

Query: 1017 LCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNV----LP 1072
            L +  + +++SI+ TP+I +K   + + +   + I  P   SK    L +  N+    L 
Sbjct: 1137 LEVTIETIRDSILSTPRIGIKANQVNIDNESCVSISLP---SKGTQSLNNWINIYSQNLQ 1193

Query: 1073 MVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSN 1132
             V++KGI  V R VI E++       +NGE  +Y+LLVEG  L+ VM   G+ G +  SN
Sbjct: 1194 KVVIKGISAVSRAVIHEED-------DNGE-IRYKLLVEGDNLREVMATPGVIGKRCTSN 1245

Query: 1133 HIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQ 1192
            + F+V   LGIEA+R  II EI+  M  HG+SID RH ML+ADLMT RGE+LGITRFG+ 
Sbjct: 1246 NTFQVWNALGIEASRATIISEIDSVMGNHGISIDPRHPMLIADLMTSRGELLGITRFGLS 1305

Query: 1193 KMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            KM +SVL LASFEKT+DHLF+A+  G+ D I GVSE IIMGIP+ LGTG  K+
Sbjct: 1306 KMKESVLNLASFEKTSDHLFDAAYYGQTDTINGVSESIIMGIPINLGTGFFKL 1358


>gi|154270754|ref|XP_001536231.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
            capsulatus NAm1]
 gi|150409805|gb|EDN05245.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
            capsulatus NAm1]
          Length = 1439

 Score = 1077 bits (2785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/1286 (45%), Positives = 819/1286 (63%), Gaps = 78/1286 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKV- 58
            +R P ++ LR+  + K I ++C     K   C +C  +NG+VKKA  + L I H++ +  
Sbjct: 138  LRRPGIDNLRRMQIAKKINERCR----KTRTCYKCNAVNGVVKKAGTSALKITHEKFRAF 193

Query: 59   --TESLQE--------FASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCE 104
              + S+++        F  +    K+S   ++     A   L+P+ VL LF+ +++ DCE
Sbjct: 194  NASTSVKKIPPPSKVVFDKSFEEAKKSNPDIDKHFKKAHDDLHPLRVLRLFRSVSNEDCE 253

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   +  PP+ IRPSV  + + S E+D+T +L  IIQ+N +L+  L
Sbjct: 254  LLSLNPEEARPEVFLWQYVPAPPVCIRPSVGQEAA-STEDDLTAKLGDIIQSNINLKNAL 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
            ++       +  W+ +Q+++A YINSDV G+       +P+ GF QRLKGKQGRFRGNLS
Sbjct: 313  IKGAPVQTIIECWDYMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL++ EVA+P  +A  +TYPE+V+ +N EKLRQ I+NG   +PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 431

Query: 282  ARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +  +  +    + +G   N +A EL+ G IV+RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYVLKKSQNFKMNLKFGN-PNLVANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV++NL TPKNGE
Sbjct: 491  FAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKHNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++++ QDF+T+++L++ KD FYDR  F+ +C YM +   R DLP P++LKP  LWTGKQ
Sbjct: 551  PIISAIQDFITAAYLLSSKDVFYDRKTFTHICLYMLESDTRFDLPPPSVLKPQILWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F+VL+RP+    V +NL    + +       +G        +  NDG++  RNSE++ G
Sbjct: 611  VFNVLMRPNKQSPVLINLDAACREFKA----PKGTPR----DLDANDGWLCIRNSEIMCG 662

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K+T+G+G KD ++ V+LRD+G    S  MNRL++LSARW+ N GFSIGI DV P ++
Sbjct: 663  VMDKSTIGSGKKDSVFYVMLRDFGPDVASEGMNRLSRLSARWLTNLGFSIGITDVYPGEK 722

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L ++K  ++   Y  C+  I+ +  GKL+  PGCD   T+E  I+ +L+++R+ AG+ C+
Sbjct: 723  LLEEKHHIVEHAYAQCDEVIQLFKNGKLEKAPGCDEQMTMENAISGLLSKVRQQAGEICI 782

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN++QMVA VGQQ +G +R  +GF DR+LPHFP+ A++P
Sbjct: 783  AELSRWNSPLIMATSGSKGSDINVAQMVALVGQQIIGNQRVQDGFQDRTLPHFPKYARQP 842

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AKGFV NSF+SGL+ TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD+
Sbjct: 843  PAKGFVRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDD 902

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +MEG++ +P++FDR     + T      + L P ++  
Sbjct: 903  TVRNSSSNIVQFQYGDDKLDPVDMEGRA-KPVHFDRTFTHAEVTTFDNSDKGLLPDEIIT 961

Query: 820  IVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHK-- 877
            + +  LA    E    A  +   K  E   D+ D  I  +E     D  Q +E+   K  
Sbjct: 962  LCQNLLAP---ERAKLARFDLSGKKLE-YNDRSDHGIDQLESA--RDFLQSIEDYRGKGV 1015

Query: 878  --TSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVAS 935
              T+ ++ + L  FI  C ++Y+  +VE G A+GA+GAQSIGEPGTQMTLKTFHFAGVA 
Sbjct: 1016 IHTAKVSTRALTSFITACLTKYKRAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAG 1075

Query: 936  MNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIV 995
            M+ITQGVPRIKEIIN +K ISTP+IT EL    +  AA++VKGR+EKT +  +   I+  
Sbjct: 1076 MSITQGVPRIKEIINASKEISTPVITCELVNKQDLRAAQIVKGRVEKTFVRDIIYYIEED 1135

Query: 996  MTSRLASIVIALDMETIQDAHLCI----------------NADIVKESIVQTPKIKLKQQ 1039
             T   A I I +D  TIQ+  L +                +AD+   S      I + QQ
Sbjct: 1136 WTGNEAYINIKIDFSTIQNLQLELTLQDILMAIKKHKRFKSADLKFRSFGSHIHIFVDQQ 1195

Query: 1040 HIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKE 1099
              +    +  E     D    +  L  LK ++P + V G     R +I   E        
Sbjct: 1196 TARTALSKAEEAATGADP---YIRLKHLKRLIPNIQVIGHSQCARAIIRTDETNTTNT-- 1250

Query: 1100 NGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMK 1159
                    LLVEG GL+  M  +GI+G  T++N+I E +  LGIEAAR  I+DEI E MK
Sbjct: 1251 --------LLVEGYGLRDCMTTDGINGRHTRTNNIMETRAVLGIEAARTTIVDEIGEVMK 1302

Query: 1160 AHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGR 1219
               M+ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LASFEKTADHLF+A   GR
Sbjct: 1303 --DMAIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGR 1360

Query: 1220 DDRIEGVSECIIMGIPMPLGTGILKI 1245
             D IEGVSECII+G  + LGTG +++
Sbjct: 1361 TDLIEGVSECIIVGKSVSLGTGAMEV 1386


>gi|195478969|ref|XP_002100717.1| GE17218 [Drosophila yakuba]
 gi|194188241|gb|EDX01825.1| GE17218 [Drosophila yakuba]
          Length = 1383

 Score = 1076 bits (2782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/1276 (45%), Positives = 798/1276 (62%), Gaps = 57/1276 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            + NP    L K  L   ++ K    A K  KCP CG  NG VKK   +L I+HD  K   
Sbjct: 127  LHNPNFSYLGKKALHVQMLAK----AKKVTKCPHCGSPNGGVKKGPGLLKILHDPYKGRK 182

Query: 58   ----VTESLQEFASAITHTKESKAAV-NVATYI-LNPVNVLFLFKRMTDTDCEVLYLSER 111
                 T ++ E   +    ++  + + N +T   L P+ VL LF+++   D  +L +   
Sbjct: 183  VDSLFTSNMNEMLRSTEANRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSH 242

Query: 112  ---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               P+ LI+T + VPP  IRPSV+ +  + + E+D+T +   I+  N  +Q+ +      
Sbjct: 243  DAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKI 302

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                  W+ LQ+ VA Y +S++ G+P +M   +   G VQRLKGKQGRFR NLSGKRV++
Sbjct: 303  ELIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDF 362

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY 287
            +GRTVISPDPNL I +V +P+R+A+ILTYPERV+  N+  +R+ ++NGP  +PGA  ++ 
Sbjct: 363  SGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANMRHMRELVRNGPSMHPGANYVQQ 422

Query: 288  PDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
               + +  + YG  R ++A ELK G IV+RHL DGD+VLFNRQPSLH+MSIMCHRA++ P
Sbjct: 423  RGSSFKKYLAYGN-REKVAQELKCGDIVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQP 481

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE  C PYNADFDGDEMN+H+PQTEEAR EAL+LMG Q+NL TPKNGEIL+A+T
Sbjct: 482  QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAAT 541

Query: 406  QDFLTSSFLITRKDTFYDRA-AFSLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS 462
            QDF+T  +L+T+K+ F  +  A  L  C++   D    + LP PA+LKP  LWTGKQ+FS
Sbjct: 542  QDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIKLPPPALLKPRRLWTGKQMFS 601

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            +L+RP+ +  V +N+  K + Y+  +             +C ND +++ RNSEL+ G + 
Sbjct: 602  LLMRPNDDSHVRLNMVNKGRNYTRNM------------DLCSNDSWIHIRNSELMCGVMD 649

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            KAT+G+G K  ++ +LLRD+G    +  M RLA++++ ++ N GFS GI DV P K+L  
Sbjct: 650  KATMGSGTKQCIFYLLLRDFGELHATKAMWRLARIASYFLQNRGFSFGISDVTPSKKLLQ 709

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K  L++  Y  CN  I+    G LQ +PGC   +TLE+V+   L+ IRE A K C   L
Sbjct: 710  HKELLLNNGYSKCNEYIEMLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCFAEL 769

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NS LIM+  GSKGS INISQM+ACVGQQ++ G+R PNGF +R+LPHF R +  PAA+
Sbjct: 770  HPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIPAAR 829

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFV NSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+K LEDL + YD +VR
Sbjct: 830  GFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVR 889

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            NA   +V  +YG DG+DP +ME ++ +P++       ++A  P    R L  +++SE +E
Sbjct: 890  NAVNEMVDTIYGGDGLDPVSMETRN-KPVDLVHQYDNLRAQHPQGKDRPLPAEELSEALE 948

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              LA+       + F   +R        ++ +  K  E             + H+   +T
Sbjct: 949  TLLASPEFAEARDDFKLDVRNHITTVSKRIGQLQKRYEK---------YINLCHQIECLT 999

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
             +QL  F++    RY     E GTA+GAI AQSIGEPGTQMTLKTFHFAGVASMNITQGV
Sbjct: 1000 AEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGV 1059

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRI EIIN  K ISTPIITAELE   +   AR VK RIEKT L +++  +++V       
Sbjct: 1060 PRIVEIINATKTISTPIITAELENCHSMEFARQVKARIEKTTLAELSSYVEVVCGPYSCY 1119

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTP-KIKLKQQHIKVLDFRKLEIFPPVDKSKIH 1061
            + I +DM  I+   L I+ D +  SI+++  ++K  Q    V   R +        S I+
Sbjct: 1120 LAIGIDMARIKLLGLHIDLDTIVFSILKSRMRVKPTQVEAVVKHSRIVVRVEATRTSTIN 1179

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
             EL  L   L  V+V G+  + R VIA        V +  +   Y+L +EG GL+ V+  
Sbjct: 1180 AELARLALSLQNVVVAGLPNINRAVIA--------VDDARQPPTYKLCIEGYGLRDVIAT 1231

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G +T+SN+I E+ QTLGIEAAR  I+ EI E M+ HGMS+D RH+MLLA  MT RG
Sbjct: 1232 YGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARG 1291

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITR G+ KM +SV  LASFEKTADHLF+A+  G+ D I GVSE II+G+P  +GTG
Sbjct: 1292 EVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPAGIGTG 1351

Query: 1242 ILKIRQRD---AVPPM 1254
            I K+ Q      VPP+
Sbjct: 1352 IFKLLQHHEDKQVPPI 1367


>gi|308491392|ref|XP_003107887.1| hypothetical protein CRE_12654 [Caenorhabditis remanei]
 gi|308249834|gb|EFO93786.1| hypothetical protein CRE_12654 [Caenorhabditis remanei]
          Length = 1406

 Score = 1075 bits (2780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 602/1299 (46%), Positives = 807/1299 (62%), Gaps = 81/1299 (6%)

Query: 3    NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA-VLGIIHDRSKVTES 61
            NP ++ L +  L K IV  C     K+  C +CG  NG VKKAV  VL I        + 
Sbjct: 137  NPNIDYLHRKALHKRIVAACK----KSSTCTQCGLKNGTVKKAVGTVLKIAFASPVPADE 192

Query: 62   LQEFASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYL----SERPEKLI 116
            L ++A+     +E    V    + +LNP+ V  LF  +   D  VL +     + P  L+
Sbjct: 193  LGKYATMFNANQEVGDHVKKMKFTLLNPLFVQKLFANVKQADIPVLMVRSGEEKHPNDLL 252

Query: 117  ITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWE 175
            +T + VPP+ IRPSV+ +  S + E+D+T +L  I+ TN  L++   +   +      WE
Sbjct: 253  LTRMPVPPVCIRPSVVSEVKSGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWE 312

Query: 176  TLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISP 235
             LQ++ A YINS++ G+P  MQ  + +  F QRLKGKQGRFRGNL GKRV+++GRTVISP
Sbjct: 313  HLQIQCALYINSEMSGLPPDMQPKKAMRSFTQRLKGKQGRFRGNLCGKRVDFSGRTVISP 372

Query: 236  DPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARV 294
            DPNL+I +V +PI +A  LT+PE V+  NIEK+RQ + NG D +PGA  ++    G  ++
Sbjct: 373  DPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDIHPGANYLVDKKTGNKKL 432

Query: 295  L-YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNE 353
            L YGK R++LA  L+ G  V+RHL+D DVVLFNRQPSLH++SIM HRA++MP RT RFNE
Sbjct: 433  LKYGK-RDELAKLLRLGDTVERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNE 491

Query: 354  SVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSF 413
              C PYNADFDGDEMN+H+PQT EA+ EA  LM V+NNL TP++GE LVA+ QDF+T  +
Sbjct: 492  CACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGY 551

Query: 414  LITRKDTFYDRAAFSLMCCYMGDG----MDRVDLPTPAILKPVELWTGKQLFSVLIRPHA 469
            L+T KDTF  RA        + D       ++ +P PAI KPVELWTGKQL  ++IRP  
Sbjct: 552  LLTHKDTFLPRAEVYRFAAALIDASAKKQTKIRIPPPAIRKPVELWTGKQLIELIIRPDK 611

Query: 470  NMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNG 529
              ++ +NLT K K+YS  L             +C  D +V  RNS L++G L K+ LG+ 
Sbjct: 612  GSQISLNLTAKNKSYSGNL------------ELCSKDSYVIIRNSVLLAGVLDKSLLGSS 659

Query: 530  NKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLIS 589
            +K  ++ +L+RDYG  A    M RLA+++  ++ N GFSIGI DV+P + L  +KG+L+ 
Sbjct: 660  SKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSERLLQEKGQLVD 719

Query: 590  ENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPL 649
              YE C   I+E  EGKL+ +PGC   +TLEA+I   L+ IR+ AG+ C+ +L   N+PL
Sbjct: 720  TGYEQCAQYIRELEEGKLKAQPGCTEEETLEAIILRELSTIRDHAGQVCLRNLSKYNAPL 779

Query: 650  IMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSF 709
             M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF RK K P AKGFVANSF
Sbjct: 780  TMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSF 839

Query: 710  YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIV 769
            YSGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K LEDL   YD +VR++ G ++
Sbjct: 840  YSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVI 899

Query: 770  QFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG 829
            +F++G+DG+DPA ME K G  ++F  +L   K          +  ++ + I   +L    
Sbjct: 900  EFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKN---------IQTKKETPIPADKLEDVL 950

Query: 830  KESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDD------KSQILEE---------- 873
            K    + F      F E  +D L  +I+  +   W +      + +  EE          
Sbjct: 951  KNEVQKQFKGKYPHFAEQLKDFLQTEIR--KSKKWQNGKTHCSQHETAEENIREKCAKCK 1008

Query: 874  -------VTHKTSGITEKQLEVFIQTCFSRYRVKR--VEAGTAIGAIGAQSIGEPGTQMT 924
                   +    S +T+ QL  FIQ C+  Y+V R   E GTA+GAI A SIGEP TQMT
Sbjct: 1009 NMAEYKSLLLTNSCLTKAQLHSFIQLCY--YKVARAITEPGTAVGAIAATSIGEPSTQMT 1066

Query: 925  LKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTL 984
            LKTFHFAGVASMNITQGVPRIKEIIN  K ISTPIITA L    +E+ AR VK RIEKT 
Sbjct: 1067 LKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTT 1126

Query: 985  LGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL 1044
            LG++   I+ V       +++ L+ + I+   L ++ + +  +I  T K+    +  K++
Sbjct: 1127 LGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVSLESIAFAI-STSKVCPMMRGCKIV 1185

Query: 1045 DFRK--LEIFPP-VDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENG 1101
               K  + I PP   K      +  LK  L  V++KGI +V R VI   EK         
Sbjct: 1186 AHGKTMMAIRPPSTSKLSKTMTMQMLKYSLGNVVIKGISSVNRCVIHADEK--------- 1236

Query: 1102 EKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAH 1161
            +   Y LLVEGT  ++V+ + G+D  KT  N+   V + LGIEAAR CII+EI  TM AH
Sbjct: 1237 KGDFYSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVAEVLGIEAARTCIINEIIATMDAH 1296

Query: 1162 GMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD 1221
            G+ +D+RH+MLLAD+MT+RGEVLGITR G+ KM  SVL+LASFEKT DHLF A+   + D
Sbjct: 1297 GIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRD 1356

Query: 1222 RIEGVSECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAP 1260
             I GVSECIIMG PM +GTG  K+ Q+     +LK  +P
Sbjct: 1357 VIHGVSECIIMGTPMTVGTGTFKLMQKHEKKAILKQNSP 1395


>gi|25145495|ref|NP_501127.2| Protein RPC-1 [Caenorhabditis elegans]
 gi|351059526|emb|CCD66619.1| Protein RPC-1 [Caenorhabditis elegans]
          Length = 1400

 Score = 1075 bits (2779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 602/1294 (46%), Positives = 814/1294 (62%), Gaps = 70/1294 (5%)

Query: 3    NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-AVLGIIHDRSKVTES 61
            NP ++ L +  L K IV  C     K   C  CG  NG VKKAV AVL I        + 
Sbjct: 132  NPNLDYLHRKALHKRIVAACK----KGSTCSHCGLKNGTVKKAVGAVLKIAFASPVSVDE 187

Query: 62   LQEFASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYL----SERPEKLI 116
            L +FA+  +  +E    V    + +LNP+ V  LF  + + D  VL +     + P  L+
Sbjct: 188  LGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLL 247

Query: 117  ITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWE 175
            +T + VPP+ IRPSV+ +  + + E+D+T +L  I+ TN  L++   +   +      WE
Sbjct: 248  LTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWE 307

Query: 176  TLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISP 235
             LQ++ A YINS++ G+P  MQ  R +  F QRLKGKQGRFRGNL GKRV+++GRTVISP
Sbjct: 308  HLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISP 367

Query: 236  DPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARV 294
            DPNL+I +V +PI +A  LT+PE V+  NIEK+RQ + NG D +PGA  ++    G  ++
Sbjct: 368  DPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKL 427

Query: 295  L-YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNE 353
            L YGK R++LA  L+ G  ++RHL+D DVVLFNRQPSLH++SIM HRA++MP RT RFNE
Sbjct: 428  LKYGK-RDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNE 486

Query: 354  SVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSF 413
              C PYNADFDGDEMN+H+PQT EA+ EA  LM V+NNL TP++GE LVA+ QDF+T  +
Sbjct: 487  CACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGY 546

Query: 414  LITRKDTFYDRAAFSLMCCYMGDG----MDRVDLPTPAILKPVELWTGKQLFSVLIRPHA 469
            L+T KDTF  RA        + D       ++ +P PAI +PVELWTGKQL  ++IRP  
Sbjct: 547  LLTHKDTFLPRAEVYRFAAALIDASAKKQTKIRIPPPAIRRPVELWTGKQLIELIIRPDK 606

Query: 470  NMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNG 529
               V +NLT K K+Y+  L             +C  D +V  RNS L++G L K+ LG+ 
Sbjct: 607  GSDVSLNLTAKNKSYTGNL------------ELCSKDSYVIIRNSVLLAGCLDKSLLGSS 654

Query: 530  NKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLIS 589
            +K  ++ +L+RDYG  A    M RLA+++  ++ N GFSIGI DV+P ++L  +KG+L+ 
Sbjct: 655  SKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVD 714

Query: 590  ENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPL 649
              Y  C+  IKE  EGKL+ +PGC   +TLE++I   L+ IR+ AG+ C+ +L   N+PL
Sbjct: 715  NGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPL 774

Query: 650  IMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSF 709
             M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF RK K P AKGFVANSF
Sbjct: 775  TMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSF 834

Query: 710  YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIV 769
            YSGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K LEDL   YD +VR++ G ++
Sbjct: 835  YSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVI 894

Query: 770  QFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG 829
            +F++G+DG+DPA ME K G  ++F  +L   K       ++ +   ++ E+++ ++    
Sbjct: 895  EFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAK-NIQTTKEQPIPVDKLDEVLKAEIQKKF 953

Query: 830  KESCSEAFLNSLRKFFEGQQDKLDKKIKF---------VEDIGWDDKSQILEEV-THKT- 878
            K      F + L ++    + K  KK +            D+   +  +I + +  +KT 
Sbjct: 954  KGKYVH-FADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTS 1012

Query: 879  ----SGITEKQLEVFIQTCFSRYRVKR--VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 932
                S +T+ QL  FI+ C+  Y+V R   E GTA+GAI A SIGEP TQMTLKTFHFAG
Sbjct: 1013 LLANSCLTKTQLCSFIELCY--YKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAG 1070

Query: 933  VASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSI 992
            VASMNITQGVPRIKEIIN  K ISTPIITA L    +E+ AR VK RIEKT LG++   I
Sbjct: 1071 VASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYI 1130

Query: 993  KIVMTSRLASIVIALDMETIQDAHLCINADIVKESI---VQTPKIKLKQQHIKVLDFRK- 1048
            + V       +++ L+ + I+   L    ++  ESI   + T K+  + +  K++   K 
Sbjct: 1131 EEVYLPDDYFLLVKLNSKRIRLLQL----EVCMESISYAIATSKVCPQMRGCKIVAHGKT 1186

Query: 1049 -LEIFPP-VDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKY 1106
             + I PP   K      +  LK  L  V+VKGI +V R VI   EK         +   Y
Sbjct: 1187 MMAIRPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHADEK---------KGDFY 1237

Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             LLVEGT  ++V+ + G+D  KT  N+   V   LGIEAAR CII+EI  TM AHG+ +D
Sbjct: 1238 SLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLD 1297

Query: 1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
            +RH+MLLAD+MT+RGEVLGITR G+ KM  SVL+LASFEKT DHLF A+   + D I GV
Sbjct: 1298 RRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGV 1357

Query: 1227 SECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAP 1260
            SECIIMG PM +GTG  K+ Q+     +LK  +P
Sbjct: 1358 SECIIMGTPMTVGTGTFKLMQKYDKKAVLKQNSP 1391


>gi|325091897|gb|EGC45207.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
          Length = 1456

 Score = 1073 bits (2776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/1299 (45%), Positives = 821/1299 (63%), Gaps = 87/1299 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKV- 58
            +R P ++ LR+  + K I ++C     K   C +C  +NG+VKKA  + L I H++ +  
Sbjct: 138  LRRPGIDNLRRMQIAKKINERCR----KTRTCYKCNAVNGVVKKAGTSALKITHEKFRAF 193

Query: 59   --TESLQE--------FASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCE 104
              + S+++        F  +    K+S   ++     A   L+P+ VL LF+ +++ DCE
Sbjct: 194  NASTSVKKIPPPSKVVFDKSFEEAKKSNPDIDKHFKKAHDDLHPLRVLRLFRSVSNEDCE 253

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   +  PP+ IRPSV  + + S E+D+T +L  IIQ+N +L+  L
Sbjct: 254  LLSLNPEEARPEVFLWQYVPAPPVCIRPSVGQEAA-STEDDLTAKLGDIIQSNINLKNAL 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
            ++       +  W+ +Q+++A YINSDV G+       +P+ GF QRLKGKQGRFRGNLS
Sbjct: 313  IKGAPVQTIIECWDYMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL++ EVA+P  +A  +TYPE+V+ +N EKLRQ I+NG   +PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 431

Query: 282  ARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +  +  +    + +G   N +A EL+ G IV+RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYVLKKSQNFKMNLKFGN-PNLVANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
             A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491  FAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++++ QDF+T+++L++ KD FYDR  F+ +C YM +     DLP P++LKP  LWTGKQ
Sbjct: 551  PIISAIQDFITAAYLLSSKDVFYDRKTFTHICLYMLESDTLFDLPPPSVLKPQILWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F+VL+RP+    V +NL    + +       +G        +  NDG++  RNSE++ G
Sbjct: 611  VFNVLMRPNKQSPVLINLDAACREFKA----PKGTPR----DLDANDGWLCIRNSEIMCG 662

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K+T+G+G KD ++ V+LRD+G    S  MNRL++LSARW+ N GFSIGI DV P ++
Sbjct: 663  VMDKSTIGSGKKDSVFYVMLRDFGPDVASEGMNRLSRLSARWLTNLGFSIGITDVYPGEK 722

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L ++K  ++   Y  C+  I+ +  GKL+  PGCD   T+E  I+ +L+++R+ AG+ C+
Sbjct: 723  LLEEKHHIVEHAYAQCDEVIQLFKNGKLEKAPGCDEQMTMENAISGLLSKVRQQAGEICI 782

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN++QMVA VGQQ +G +R  +GF DR+LPHFP+ A++P
Sbjct: 783  AELSRWNSPLIMATSGSKGSDINVAQMVALVGQQIIGNQRVQDGFQDRTLPHFPKHARQP 842

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AKGFV NSF+SGL+ TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD+
Sbjct: 843  PAKGFVRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDD 902

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQV-- 817
            +VRN+   IVQF YGDD +DP +MEG++ +P++FDR     + T      + L P ++  
Sbjct: 903  TVRNSSSNIVQFQYGDDKLDPVDMEGRA-KPVHFDRTFTHAEVTTFDNSDKGLLPDEIIT 961

Query: 818  ---------------SEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDI 862
                            +++ K+L    +       L S R F +  +D +  K + +  I
Sbjct: 962  LCQNLLAPERAKLARFDLLGKKLEYNDRSDHGIDQLESARDFLQSIEDYVCAKAEKLRSI 1021

Query: 863  GWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQ 922
                K Q  + V H T+ ++ + L  FI  C ++Y+  +VE G A+GA+GAQSIGEPGTQ
Sbjct: 1022 DSGTK-QRGKGVIH-TAKVSTRALTSFITACLTKYKRAQVEPGHAVGAVGAQSIGEPGTQ 1079

Query: 923  MTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEK 982
            MTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT EL    +  AA++VKGR+EK
Sbjct: 1080 MTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVITCELVNKQDLRAAQIVKGRVEK 1139

Query: 983  TLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCI----------------NADIVKE 1026
            T +  +   I+   T   A I I +D  TIQ+  L +                +AD+   
Sbjct: 1140 TFVRDIIYYIEEDWTGNEAYINIKIDFSTIQNLQLELTLQDILMAIKKHKRFKSADLKFR 1199

Query: 1027 SIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVV 1086
            S      I + QQ  +    +  E     D    +  L  LK ++P + V G     R +
Sbjct: 1200 SFGSHIHIFVDQQTTRTALSKTEEAATGADP---YIRLKHLKRLIPNIQVIGHPQCARAI 1256

Query: 1087 IAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAA 1146
            I   E                LLVEG GL+  M  +GI+G  T++N+I E +  LGIEAA
Sbjct: 1257 IRTDETNTTNT----------LLVEGYGLRDCMTTDGINGHHTRTNNIMETRAVLGIEAA 1306

Query: 1147 RICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEK 1206
            R  I++EI E MK   M+ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LASFEK
Sbjct: 1307 RTTIVEEIGEVMK--DMAIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEK 1364

Query: 1207 TADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            TADHLF+A   GR D IEGVSECII+G  + LGTG +++
Sbjct: 1365 TADHLFDAGGAGRTDLIEGVSECIIVGKSVSLGTGAMEV 1403


>gi|332024635|gb|EGI64832.1| DNA-directed RNA polymerase III subunit RPC1 [Acromyrmex echinatior]
          Length = 1988

 Score = 1073 bits (2775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/1272 (47%), Positives = 802/1272 (63%), Gaps = 64/1272 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++NPK   L +  L K I++    +A K   CP C   NG VKKA   L I+H++ K   
Sbjct: 738  IQNPKSGYLMRKALRKKILE----VARKKTVCPNCKSNNGPVKKA-GFLKIVHEKYKNLK 792

Query: 58   -----VTESLQEFASAITHTKESKAAVN-----VATYILNPVNVLFLFKRMTDTDCEVLY 107
                 + E L E    I    E K  V      V    L P  V  LF R+   D   L 
Sbjct: 793  KTDPIIQEKLTELTPKIERDTEFKNIVEQNYRCVFDKYLYPNVVQELFNRIPTGDICFLL 852

Query: 108  LS---ERPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASL-QQELV 162
            ++     P  L++  I VPPI IRPS++ D  + +NE+ +T +L  I   N  + +Q+ V
Sbjct: 853  MNPGCATPVDLVLRRIPVPPICIRPSILSDLKAGTNEDYLTMKLSEIALINDVIRKQKGV 912

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
              N+  +    W+ LQ+    YINS++ G+P  MQ  +   G VQRLKGKQGRFRGNLSG
Sbjct: 913  NINTYMEQ---WDFLQLHCGLYINSEMSGIPLHMQPKKSGRGIVQRLKGKQGRFRGNLSG 969

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV++T RTVISPDPNL+I +V +PI +A+ LTYPERV   N+E +R+ ++NGPD +PGA
Sbjct: 970  KRVDFTSRTVISPDPNLRIEQVGVPIHVAKTLTYPERVIPSNMELMRKLVRNGPDTHPGA 1029

Query: 283  RMIRYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
              I+Y +   R  + YG  RN+ A +L+ G IV+RHL+D D+VLFNRQPSLH++SIM HR
Sbjct: 1030 NYIQYKNSQNRRYLGYGD-RNKAAQDLQYGDIVERHLKDDDLVLFNRQPSLHKLSIMTHR 1088

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
             +++  RT RFNE VC PYNADFDGDEMN+H+PQTEEAR EAL+L+  ++NL TP+NG++
Sbjct: 1089 TKVLEHRTFRFNECVCAPYNADFDGDEMNLHLPQTEEARAEALVLLANKSNLVTPRNGDL 1148

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG--DGMDRVDLPTPAILKPVELWTGK 458
            L+A+TQDF+T ++L+T+KDTF       L  C +   D   +V LP PAI+KP  LWTGK
Sbjct: 1149 LIAATQDFITGAYLLTQKDTFLQIEQARLALCLLAGSDASMKVTLPPPAIIKPARLWTGK 1208

Query: 459  QLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELIS 518
            Q+FS++IRP+    V  NL  K KTY+N      G E       C ND +V  RNSEL++
Sbjct: 1209 QIFSLIIRPNKECSVKANLKAKGKTYTN------GKE------FCINDSYVIIRNSELLA 1256

Query: 519  GQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKK 578
            G + K+ LG+G+K  ++ +LLRD+G    +  M RL +++  +    G S+GI D+ P +
Sbjct: 1257 GTMDKSILGSGSKQNIFYILLRDWGEDVATAAMWRLTRITNHFNFERGISLGIGDLIPSQ 1316

Query: 579  ELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKAC 638
             L   K ++++ +Y  CN  I+   +G L  +PGC   +TLE  I + L+ IR+D GKAC
Sbjct: 1317 GLLRAKERILNTHYSTCNEYIQLMEQGHLVCQPGCSEEETLETRILNELSVIRDDVGKAC 1376

Query: 639  MGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKE 698
            +  L   N+PL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +R+LPH   ++K+
Sbjct: 1377 LKELHPTNTPLTMALCGSKGSFINISQMIACVGQQAINGCRVPDGFENRALPHVLTRSKK 1436

Query: 699  PAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYD 758
            P AKGFV NSFYSGL + EF+FH MGGREGL DTAVKTA+TGYM RRLIK+LEDL I YD
Sbjct: 1437 PDAKGFVENSFYSGLVSKEFYFHAMGGREGLTDTAVKTAETGYMQRRLIKSLEDLCIHYD 1496

Query: 759  NSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVS 818
             +VRN+   ++Q  YG DG+DP  MEGK   P++++R+   V+A  P   +  L    V 
Sbjct: 1497 MTVRNSMRDMIQTTYGGDGLDPTYMEGKDC-PVDYERVYEHVRAKMPYITEEPLDYASVI 1555

Query: 819  EIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKT 878
               ++ L +   E  SE F + L  F    + K+ +KI F       + S     VT + 
Sbjct: 1556 NATKEMLRSEEYECLSEEFKDELTSFL---KLKVARKIAFYRQNIISNSS-----VTSQL 1607

Query: 879  SGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNI 938
               T  QL  FI TC  +Y   ++E GTA+GA+ AQSIGEPGTQMTLKTFHFAGVA+MNI
Sbjct: 1608 ERFTVSQLVEFIHTCKEKYMRAKIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVAAMNI 1667

Query: 939  TQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            TQGVPRIKEIIN + +ISTPIITA L  + N   A  VK RIEKT LG V++ I+ +   
Sbjct: 1668 TQGVPRIKEIINASPKISTPIITATLINDANSEIAEQVKARIEKTTLGDVSEYIEEIYLP 1727

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKS 1058
                ++I LD+  I+   L I+ + V   +  T K+KL  ++++ +    + I P   K 
Sbjct: 1728 DDHFLIIKLDINRIKMLKLEIDVNSVCYKLC-TSKLKLTSKNVEKVTDSVIIIRPNRSKD 1786

Query: 1059 K-IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKEN-GEKKKYRLLVEGTGLQ 1116
            K  +F    L   +P VI+KG+ ++ RVV+           EN G K K+ L VEG   +
Sbjct: 1787 KDSNFPFRQLTEAIPNVIIKGLPSINRVVVH---------NENLGSKSKFTLFVEGDNFR 1837

Query: 1117 AVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADL 1176
             VM   GI G KTKSN+  EV +TLGIEAAR  I+ EI   M+ HG+SID RH+MLLADL
Sbjct: 1838 EVMATRGILGEKTKSNNTIEVFKTLGIEAARTTIMSEIKSVMENHGISIDCRHLMLLADL 1897

Query: 1177 MTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPM 1236
            MT RGEVLGITR G+ KM +SVL LASFEKTADHLF+A+  G+ D I GVSE IIMGIP+
Sbjct: 1898 MTSRGEVLGITRQGLAKMKESVLNLASFEKTADHLFDAAYYGQKDVISGVSESIIMGIPV 1957

Query: 1237 PLGTGILKIRQR 1248
            PLGTGI K+  +
Sbjct: 1958 PLGTGIFKLLHK 1969


>gi|295668637|ref|XP_002794867.1| DNA-directed RNA polymerase III subunit RPC1 [Paracoccidioides sp.
            'lutzii' Pb01]
 gi|226285560|gb|EEH41126.1| DNA-directed RNA polymerase III subunit RPC1 [Paracoccidioides sp.
            'lutzii' Pb01]
          Length = 1425

 Score = 1073 bits (2774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/1284 (45%), Positives = 804/1284 (62%), Gaps = 87/1284 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKVT 59
            +R P ++ LR+  ++K I ++C     K   C  C  ING+VKKA  + L I H++ ++ 
Sbjct: 138  LRRPGIDNLRRMQIVKKINERCR----KTRTCYNCNAINGVVKKAGTSALKISHEKFRIE 193

Query: 60   ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLI 116
            +  ++                 A   L+P+ VL LF+R+++ DCE+L L+    RPE  +
Sbjct: 194  KHFKK-----------------AHDDLHPLRVLKLFRRISNEDCELLGLNPAEARPEVFL 236

Query: 117  ITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWET 176
               I  PP+ IRPSV  + + S E+D+T +L  IIQ+N +L+  L +       +  W+ 
Sbjct: 237  WQYIPAPPVCIRPSVGQEAA-STEDDLTAKLGDIIQSNMNLKNALNKGAPVQTIIECWDH 295

Query: 177  LQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPD 236
            +Q+++A YINSDV G+       +P+ GF QRLKGKQGRFRGNLSGKRV+++ RTVISPD
Sbjct: 296  MQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSSRTVISPD 354

Query: 237  PNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI--RYPDGTARV 294
            PNL+I EVA+PI +A  +TYPE+V+ +N +KLRQC++NG   +PGA  +  +  +    +
Sbjct: 355  PNLRIDEVAVPILVAMNMTYPEQVTRYNKDKLRQCVRNGTKTWPGANYVLKKSQNFKMNL 414

Query: 295  LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNES 354
             +G   N +A EL+ G IV+RH+EDGD+VLFNRQPSLH++SI+ H  ++ P RT R NE 
Sbjct: 415  KFGN-PNLIANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFVKVRPHRTFRLNEC 473

Query: 355  VCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFL 414
            VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE ++++ QDF+T++++
Sbjct: 474  VCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLVTPKNGEPIISAIQDFITAAYM 533

Query: 415  ITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVY 474
            ++ K+ FYDR  F+ +C YM     R DLP P+ILKP  LWTGKQ+F++L+RP+ +  V 
Sbjct: 534  LSSKNVFYDRKTFTQVCLYMLLPGTRFDLPPPSILKPQMLWTGKQVFNILMRPNKDSPVL 593

Query: 475  VNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGL 534
            VNL    + +       +G        +  ND ++  RNSE++ G + K T+G+G KD +
Sbjct: 594  VNLDAACREFKA----PKGTPR----DLDANDRWLCIRNSEVMCGVMDKYTIGSGKKDSV 645

Query: 535  YSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEV 594
            + V+LRDYG    +  MNRL++L ARWI + GFSIGI DV P   L ++K +L+   Y  
Sbjct: 646  FYVMLRDYGPAIAAEGMNRLSRLCARWITDLGFSIGITDVYPGDRLLEEKKELVEHAYVQ 705

Query: 595  CNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQC 654
            C+  I+++  G L+  PGCD   T+E +I+ IL+++R+ AG  C+  L   N+PLIM+  
Sbjct: 706  CDEVIQKFKSGNLEKAPGCDEQMTMENIISGILSKVRQQAGDLCISELSRWNTPLIMATS 765

Query: 655  GSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLS 714
            GSKGS IN++QMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P AKGFV NSF+SGLS
Sbjct: 766  GSKGSNINVAQMVALVGQQIIGGQRVQDGFQDRTLPHFPKHARQPPAKGFVQNSFFSGLS 825

Query: 715  ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYG 774
             TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD +VRN+   IVQF YG
Sbjct: 826  PTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDGTVRNSSSSIVQFQYG 885

Query: 775  DDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAA------- 827
            DD +DP +MEG +  P+NFDR     + T      + L P ++  + +  LA        
Sbjct: 886  DDKLDPVDMEGNA-RPVNFDRTFTHSEVTTFDNSDKGLLPDEIMTLCQSLLAKERARLNR 944

Query: 828  ----------YGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHK 877
                        +       L S R + +  +D +  K + +  I   +  Q      + 
Sbjct: 945  YDLMGNRLDYMDRSDNGIDQLESARDYLQSIEDYISSKAEKLRSIDGGNNGQGRGRGINH 1004

Query: 878  TSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN 937
            T+ I+ + L  FI +C  +Y+  +VE G A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+
Sbjct: 1005 TAKISARTLAAFITSCLVKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMS 1064

Query: 938  ITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            ITQGVPRIKEIIN +K ISTP+IT +L    +  AA++VKGR+EKT +  V   I+   T
Sbjct: 1065 ITQGVPRIKEIINASKEISTPVITCQLVNKGDLRAAQIVKGRVEKTFMRDVIYYIEEDWT 1124

Query: 998  SRLASIVIALDMETIQDAHLCI----------------NADIVKESIVQTPKIKLKQQHI 1041
               A I I +D  TIQ+  L +                +AD+   S      I + QQ  
Sbjct: 1125 GNDAYINIKIDFSTIQNLQLELGLQDILAAIKKHKRFKSADLKFRSFGSHIHIFVDQQAT 1184

Query: 1042 KVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENG 1101
            +    +  E     D    +  L  LK ++P + V G     R +I   E          
Sbjct: 1185 RTALSKSEEAATGADP---YIRLKHLKRLIPTIQVLGHPQCSRAIIRTDETCTTNT---- 1237

Query: 1102 EKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAH 1161
                  LLVEG GL+  M  +GIDG  T++N+I E +  LGIEAAR  I++EI E MK  
Sbjct: 1238 ------LLVEGYGLRDCMTTDGIDGRNTRTNNIMETRLVLGIEAARTTIVEEIGEVMK-- 1289

Query: 1162 GMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD 1221
             M+ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LASFEKTADHLF+A   GR D
Sbjct: 1290 DMAIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTD 1349

Query: 1222 RIEGVSECIIMGIPMPLGTGILKI 1245
             IEGVSECII+G  + LGTG +++
Sbjct: 1350 LIEGVSECIIVGKGISLGTGSMEV 1373


>gi|194894264|ref|XP_001978037.1| GG17910 [Drosophila erecta]
 gi|190649686|gb|EDV46964.1| GG17910 [Drosophila erecta]
          Length = 1383

 Score = 1071 bits (2770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/1284 (45%), Positives = 796/1284 (61%), Gaps = 73/1284 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            + NP    L K  L   ++ K    A K  KCP CG  NG VKK   +L I+HD  K  +
Sbjct: 127  LHNPNFSYLGKKALHVQMLAK----AKKVTKCPHCGSPNGGVKKGPGLLKILHDPYKGRK 182

Query: 61   SLQEFASAITHTKESKAA-----VNVATYI----LNPVNVLFLFKRMTDTDCEVLYLSER 111
                F + I     S  A       +  Y     L P+ VL LF+++   D  +L +   
Sbjct: 183  VDSLFTNHINELLRSTEANRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSH 242

Query: 112  ---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               P+ LI+T + VPP  IRPSV+ +  + + E+D+T +   I+  N  +Q+ +      
Sbjct: 243  DAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKI 302

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                  W+ LQ+ VA Y +S++ G+P +M   +   G VQRLKGKQGRFR NLSGKRV++
Sbjct: 303  ELIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDF 362

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY 287
            +GRTVISPDPNL I +V +P+R+A+ILTYPERV+  N+  +R+ ++NGP  +PGA  ++ 
Sbjct: 363  SGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANMRHMRELVRNGPSMHPGANYVQQ 422

Query: 288  PDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
               + +  + YG  R ++A ELK G IV+RHL DGD+VLFNRQPSLH+MSIMCHRA++ P
Sbjct: 423  RGSSFKKYLAYGN-REKVAQELKCGDIVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQP 481

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE  C PYNADFDGDEMN+H+PQTEEAR EAL+LMG Q+NL TPKNGEIL+A+T
Sbjct: 482  QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAAT 541

Query: 406  QDFLTSSFLITRKDTFYDRA-AFSLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS 462
            QDF+T  +L+T+K+ F  +  A  L  C++   D    + LP PA+LKP  LWTGKQ+FS
Sbjct: 542  QDFITGGYLLTQKEVFLTKEEAMQLAACFLSNEDSTMHIKLPPPALLKPRRLWTGKQMFS 601

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            +L+RP+ +  V +N+  K + Y+  +             +C ND +++ RNSEL+ G + 
Sbjct: 602  LLMRPNDDSHVRLNMVNKGRNYTRNM------------DLCSNDSWIHIRNSELMCGVMD 649

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            KAT+G+G K  ++ +LLRD+G    +  M RLA++++ ++ N GFS GI DV P K+L  
Sbjct: 650  KATMGSGTKQCIFYLLLRDFGELHATKAMWRLARIASYFLQNRGFSFGISDVTPSKKLLQ 709

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K  L++  Y  CN  I     G LQ +PGC   +TLE+V+   L+ IRE A K C   L
Sbjct: 710  HKELLLNNGYAKCNEYIDMLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCFAEL 769

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NS LIM+  GSKGS INISQM+ACVGQQ++ G+R PNGF +R+LPHF R +  PAA+
Sbjct: 770  HPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIPAAR 829

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFV NSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+K LEDL + YD +VR
Sbjct: 830  GFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVR 889

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            NA   +V  +YG DG+DP +ME ++ +P++       ++A  P    R L  +++SE +E
Sbjct: 890  NAVNEMVDTIYGGDGLDPVSMETRN-KPVDLVHQYDNLRAQHPQGKDRPLLAEELSEALE 948

Query: 823  KQLAAYGKESCSEAF-------LNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVT 875
              L         + F       +N++ K     Q + +K I                   
Sbjct: 949  TLLKTPEFSEARDDFKLDVRNHINTVSKRIGQLQKRYEKYINLC---------------- 992

Query: 876  HKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVAS 935
            H+   +T +QL  F++    RY     E GTA+GAI AQSIGEPGTQMTLKTFHFAGVAS
Sbjct: 993  HQIECLTAEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVAS 1052

Query: 936  MNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIV 995
            MNITQGVPRI EIIN  K ISTPIITAELE   +   AR VK RIEKT L +++  +++V
Sbjct: 1053 MNITQGVPRIVEIINATKTISTPIITAELENCHSMEFARQVKARIEKTTLAELSSYVEVV 1112

Query: 996  MTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL--DFRKLEIFP 1053
                   + I +DM  I+   L I+ D +  SI+++ ++++K   ++ +    R +    
Sbjct: 1113 CGPYSCYLAIGIDMARIKLLGLHIDLDTIVFSILKS-RMRVKPTQVEAVASHSRIVVRVE 1171

Query: 1054 PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGT 1113
                S I+ EL  L   L  V+V G+  + R VIA        V +  +   Y+L +EG 
Sbjct: 1172 ATRTSTINAELARLALSLQNVVVAGLPNINRAVIA--------VDDARQPPTYKLCIEGY 1223

Query: 1114 GLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1173
            GL+ V+   G+ G +T+SN+I E+ QTLGIEAAR  I+ EI E M+ HGMS+D RH+MLL
Sbjct: 1224 GLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLL 1283

Query: 1174 ADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMG 1233
            A  MT RGEVLGITR G+ KM +SV  LASFEKTADHLF+A+  G+ D I GVSE II+G
Sbjct: 1284 ASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILG 1343

Query: 1234 IPMPLGTGILKIRQRD---AVPPM 1254
            +P  +GTGI K+ Q      VPP+
Sbjct: 1344 MPAGIGTGIFKLLQHHEDKQVPPI 1367


>gi|320592285|gb|EFX04724.1| DNA-directed RNA polymerase 3 largest [Grosmannia clavigera kw1407]
          Length = 1390

 Score = 1071 bits (2770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/1319 (44%), Positives = 802/1319 (60%), Gaps = 98/1319 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----- 55
            +R P ++ LRKT     I KK + +  K  +CP C  +NG +KK +  L + HDR     
Sbjct: 84   LRKPGIDNLRKT----QICKKVNEICKKCKECPYCQSLNGSIKK-IGPLKVAHDRFAAFN 138

Query: 56   ----------SKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
                      ++  E    F+ A     + +  ++ A   L+P++VL LFK+++ +DCE+
Sbjct: 139  KSTAAKKIPPARKREFEHSFSEARKRIPDLEKHLHRALEDLDPLHVLNLFKKISPSDCEL 198

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L     RPE  I   +  PP+ IRPSV    S S E+D+T +L  I+Q    ++  LV
Sbjct: 199  LGLDPLDGRPEMFIWQYLPAPPVCIRPSV-QQQSSSTEDDLTTKLAEIVQVCGLIRTALV 257

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            +       +  WE LQ ++A YINS++ G+  + +  +P+ GF QRLKGKQGRFRGNLSG
Sbjct: 258  KGAPITTLMEQWEFLQFQLAMYINSELPGLT-AARHGKPIRGFSQRLKGKQGRFRGNLSG 316

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I EVA+P+ +A+ L+YPERV+  NI KLR  + NGP ++PGA
Sbjct: 317  KRVDFSGRTVISPDPNLAINEVAVPVLVAKNLSYPERVNHINIRKLRNLVLNGPTQWPGA 376

Query: 283  RMIRYPDGTARVLYGKFRN--QLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
            + I   D     L   F N  Q A +L+ G  V+RHLEDGD+VLFNRQPSLH++SIM H 
Sbjct: 377  KSILKKDDGGYKLDLNFGNKEQFAKDLRVGDTVERHLEDGDIVLFNRQPSLHKLSIMSHL 436

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
             ++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EAL LMGV++NL TPKNGE 
Sbjct: 437  VKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEALTLMGVKHNLATPKNGEP 496

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A+TQDF+T+++LI+ KD F+ R  F+ MC +M    +++D+P PAILKP  LWTGKQ+
Sbjct: 497  IIAATQDFITAAYLISSKDRFFTRHTFAYMCAHMTGSSEQLDIPPPAILKPQALWTGKQV 556

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            F++++RP+ + +V VNL  K K Y     R  G+       M P D F+  RNSE++ G+
Sbjct: 557  FNIMMRPNKSSKVLVNLDAKCKAYK----RRPGEAP----DMDPEDNFLVVRNSEVMCGR 608

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + K+T+G+G KD ++ V+LRDYG       MNRLA+L AR++GN G SIG+ DV P   L
Sbjct: 609  MDKSTVGSGKKDSVFYVILRDYGPDEAVTAMNRLARLCARFMGNFGLSIGVFDVFPLTTL 668

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
             +K   L+ E    C+  I ++N GKL+   GC+  QTLE  I+ +L+++R  AG  C+ 
Sbjct: 669  REKIKILVREANLKCDELIHKFNTGKLEKSAGCNLDQTLENSISGVLSKVRSAAGDLCLE 728

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
            +L   N+PL M+  GSKG  IN++QMVA VGQQ +GG+R PNGF DRSLPHFP+  + PA
Sbjct: 729  TLSKHNAPLTMATSGSKGLAINVAQMVAVVGQQIIGGQRVPNGFQDRSLPHFPKNVRNPA 788

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSFYSGL  TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYDN+
Sbjct: 789  SKGFVQNSFYSGLLPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDNT 848

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEI 820
            VR + G +VQF +G DG+DP +MEG S  P+NF+R     ++      +  L P  +  +
Sbjct: 849  VRTSSGDVVQFQFGSDGLDPVDMEG-SAVPVNFERSWTHAESITWSNAEPSLDPDTIMAV 907

Query: 821  VEKQLA-----------------AYGKES--------CSEAFLNSLRKFFEGQQDKL-DK 854
             +  LA                  Y  +S         +  FL+ +R+F + + D+L + 
Sbjct: 908  CDSLLADERAKYIRRHLVTDALLDYNDQSDASLDLQEGARKFLDDVRQFVQKRADRLTNA 967

Query: 855  KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQ 914
            K + VE   +D           KT+ ++EK L  F+  C  ++R   VE G A+GA+GAQ
Sbjct: 968  KERLVET--FDASLASHRSYIDKTAKVSEKTLRAFVVMCLDKFRKAHVEPGHAVGAVGAQ 1025

Query: 915  SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAAR 974
            SIGEPGTQMTLKTFHFAGVA M+IT+GVPRIKEIIN +K+I+TPIIT  L+      AA 
Sbjct: 1026 SIGEPGTQMTLKTFHFAGVAGMSITEGVPRIKEIINASKKINTPIITCPLQNPRQIEAAH 1085

Query: 975  VVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKI 1034
            +VKGRIEKT +  V   ++         I++ +D + + D  L +    +  S+ +  K+
Sbjct: 1086 IVKGRIEKTYISDVLSYVEEEWDGNEGRIIMKVDQQALNDLQLGVGLHDIALSVCKQKKL 1145

Query: 1035 KLKQQHIKVLDF--------------------RKLEIFPPVDKSKIHFELYSLKNVLPMV 1074
            K+ +  +    F                       +     D   + F +  L+  LP +
Sbjct: 1146 KIDENLVFADTFASTITIIVRNGGADYGSRRSAATKAKASADNQDLLFRVNFLRRQLPAI 1205

Query: 1075 IVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHI 1134
             + G     R VI              EK ++ + VEG GL+  +  EG+ G    +N I
Sbjct: 1206 GISGYPDAARAVI------------QTEKDEHTVYVEGYGLRECINTEGVIGTGVVTNSI 1253

Query: 1135 FEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKM 1194
             E    LGIEAAR  I  EI   M+   M+ID RHM LLAD+MT++G+VLGITRFG+ KM
Sbjct: 1254 MECLDILGIEAARKSIAVEIKNVMR--DMNIDPRHMELLADVMTYKGQVLGITRFGLAKM 1311

Query: 1195 DKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAVPP 1253
              SVL LASFEKT DHLF+A    ++D I+GVSE +IMG  M +GTG   + +R  + P
Sbjct: 1312 RDSVLQLASFEKTPDHLFDAVAGLKEDPIQGVSESVIMGQSMSVGTGGFGMIRRLGLQP 1370


>gi|330914134|ref|XP_003296505.1| hypothetical protein PTT_06631 [Pyrenophora teres f. teres 0-1]
 gi|311331266|gb|EFQ95369.1| hypothetical protein PTT_06631 [Pyrenophora teres f. teres 0-1]
          Length = 1472

 Score = 1071 bits (2770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/1331 (44%), Positives = 811/1331 (60%), Gaps = 113/1331 (8%)

Query: 4    PKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA-VLGIIHDRSKV---- 58
            P M+ LRK  + K I+  C     K   CP C  + G V+K     L IIH+R       
Sbjct: 141  PDMDTLRKGAVTKKIIDDCR----KKKTCPYCNALQGTVRKVPGHPLKIIHNRYDAFNRS 196

Query: 59   -----------TESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLY 107
                        E  Q F +A     +    +  A   ++P+  L LFK+++  DCE+L 
Sbjct: 197  TAKTRKPPPGKLEFDQSFDTAKAANPDLDKHMKKAVDDMHPLRTLNLFKKISPEDCELLA 256

Query: 108  L---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEA 164
            +     RPE LI   + VPP+A+RPSV+ +G  + E+D+T ++  I   ++ ++  L   
Sbjct: 257  MVPEDARPEMLIWEYMPVPPVALRPSVMQEGG-ATEDDVTNKIGDICHISSIIRAGLARG 315

Query: 165  NSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKR 224
                  +  W+ LQ+++A YINSD  G+     + + + GF QRLKGK GRFR NLSGKR
Sbjct: 316  FPLQILMEQWDFLQLQIAMYINSDAPGLK-QQGLQKTMRGFSQRLKGKGGRFRQNLSGKR 374

Query: 225  VEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARM 284
            V+++GRTVI PDPNL I EVA+P R+A+ LTYPE+ + +NIEKLR+ ++NG  KYPGA  
Sbjct: 375  VDFSGRTVIGPDPNLSIDEVAVPQRIAKNLTYPEKATRYNIEKLRRLVRNGAQKYPGANY 434

Query: 285  IRYPDGT------------ARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
            I    G             +RV  G   +  A  LK G IV+RH+EDGD+VLFNRQPSLH
Sbjct: 435  ILTDQGPNKDPGKISLIALSRVDKGDRLDYTAKRLKIGDIVERHIEDGDIVLFNRQPSLH 494

Query: 333  RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
            ++SI+ HRA+I PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEA  LMGV+ NL
Sbjct: 495  KLSILSHRAKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEATELMGVKYNL 554

Query: 393  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG----------MDRVD 442
             TPKNG  ++A+ QDF+T+++L++ K+ F+DR  F  +  YM +G             +D
Sbjct: 555  ATPKNGTPIIAAIQDFITAAYLLSNKNNFFDRKTFCQIVNYMFNGEGAFDPDTGKKHPID 614

Query: 443  LPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETM 502
            +P P + KP  LWTGKQ+F++L+RP+   RV +NL    K Y      T G    +   +
Sbjct: 615  IPPPVVWKPQALWTGKQVFNLLMRPNKECRVLINLEAACKQYKG----TPG----KAPDL 666

Query: 503  CPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA-HATSGCMNRLAKLSARW 561
              +D ++  RNSE++ G + KAT+G+G KD ++ V++RD+G  HA  G MNRL+KLSARW
Sbjct: 667  NEDDAYLVIRNSEVMCGVMDKATVGDGKKDSVFYVMMRDFGPDHAVQG-MNRLSKLSARW 725

Query: 562  IGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEA 621
            + N+GFS+GI DV P  +L+ KK  L+ E Y  C+  I +++ GKLQ   GCDA QT+E 
Sbjct: 726  LTNNGFSLGISDVTPGDKLNTKKQLLVQEAYAQCDKLISDFSNGKLQPDAGCDAEQTMEN 785

Query: 622  VITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
             I  IL+ +R+ AG+ C   L   NSPL+M++CGSKGS IN+SQMVA VGQQ +GG R  
Sbjct: 786  KIGGILSGVRQAAGEICFEELSRWNSPLLMAKCGSKGSNINVSQMVASVGQQMIGGARVA 845

Query: 682  NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
            +GF  R+LPHFP+ A++PA+KGFV+NSF+SGL+ +EF FH M GREGLVDTAVKTA+TGY
Sbjct: 846  DGFQHRTLPHFPKAARQPASKGFVSNSFFSGLTPSEFIFHAMSGREGLVDTAVKTAETGY 905

Query: 742  MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVK 801
            MSRRL+K+LEDLS QYDN+VRN+ G +VQF YGDD +DP +MEGK+ +P++FDR      
Sbjct: 906  MSRRLMKSLEDLSAQYDNTVRNSSGTVVQFQYGDDNLDPVDMEGKA-KPVHFDRTFSHAV 964

Query: 802  ATCPPAGQRYLSPQQVSEIVEKQLAA-------YGKESCSEAFL-----------NSLRK 843
             +     +  L+PQ+V +I E +L         Y  +  +                SLR 
Sbjct: 965  TSTWNNAESSLTPQEVRDITEAKLNTERNRYPRYKLDGVTRLDYRDTTDDGIDQKESLRD 1024

Query: 844  FFEGQQDKL-DKKIKFVEDIGW--------DDKSQILEE-----VTHKTSGITEKQLEVF 889
            F +  QD + +K  K  + + W         D+ Q   +     ++   + I+   L+ F
Sbjct: 1025 FLDTVQDYIFNKAQKLEQTLTWLGVVQPSVKDRKQSPADAEKYSLSDGIAKISHSALDTF 1084

Query: 890  IQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII 949
            I  C ++Y   RV+ G A+GAIGAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEII
Sbjct: 1085 ITLCLTKYHRSRVQPGHAVGAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII 1144

Query: 950  NGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDM 1009
            N +  ISTP+I  ELE   +E  AR VK R+EKT L  V + ++ V     A + + +D 
Sbjct: 1145 NASSTISTPVIDCELENKVSERVAREVKARVEKTYLRDVIRYVEDVWHPEGAYVALRIDW 1204

Query: 1010 ETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP----------PVDKSK 1059
            +TIQ   + +    +  +I     +K  +   +V   +KL              PV  S+
Sbjct: 1205 DTIQKLFIDVKPHDIAAAINAHKPLKWGKAGAQVHIGQKLIRVDVPDPDATKKRPVKTSR 1264

Query: 1060 IHFELY----SLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKK-KYRLLVEGTG 1114
             +   +     +K ++P V++KG     R VI      K++   N + + + +LLVEG G
Sbjct: 1265 NYKNFFERVQQVKALIPDVVIKGYPDCSRAVI------KKETSPNAQGEYECKLLVEGYG 1318

Query: 1115 LQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLA 1174
            L+  M   GI   KT SN+I EV+  LGIEAAR  I+ EI   M    M ID RHM LLA
Sbjct: 1319 LRDCMTTPGIVPYKTVSNNIMEVKTVLGIEAARATIVREIGSVMG--NMDIDPRHMQLLA 1376

Query: 1175 DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGI 1234
            D+MTF+GEV GITRFG+QK   SVL LASFEKT DHLF A+  G+ D I+GVSECIIMG 
Sbjct: 1377 DVMTFKGEVFGITRFGLQKTRDSVLQLASFEKTPDHLFEAAARGKTDTIDGVSECIIMGQ 1436

Query: 1235 PMPLGTGILKI 1245
             + LGTG +++
Sbjct: 1437 SVKLGTGSMQV 1447


>gi|347831184|emb|CCD46881.1| similar to DNA-directed RNA polymerase iii largest subunit
            [Botryotinia fuckeliana]
          Length = 1442

 Score = 1071 bits (2769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/1316 (44%), Positives = 810/1316 (61%), Gaps = 95/1316 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            +R P ++ L++T + K I ++C     KA +CP C   NG ++K ++ + + HD+     
Sbjct: 136  LRKPGIDNLKRTQICKKINEQCR----KASQCPHCNATNGQIRK-ISPVRLAHDKYTKYN 190

Query: 58   ------------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
                        + E  + F  A  H  E +  V      L+P+ VL LFK +T +DCE+
Sbjct: 191  KSTAAKKVVPPGMAEYQKSFEEAKKHNTELEKHVKKVYEDLHPLRVLNLFKLITPSDCEL 250

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L ++    RPE  +   +  PPI IRPSV  DG  SNE+DIT +L  I+   + L+  L 
Sbjct: 251  LGINPAEGRPEMFLWQFVPAPPICIRPSVQQDGG-SNEDDITTKLAEIVSMASLLRAALH 309

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            +  +    +  W+ LQ+++A Y+NSDV G+       + + GF QRLKGKQGRFRGNLSG
Sbjct: 310  KGQAVQTIMEQWDFLQLQIAMYVNSDVPGLQ-QPGFGKAIRGFCQRLKGKQGRFRGNLSG 368

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I EVA+PI +A+ LTYPERV   NIEKLRQC+ NGP+ +PGA
Sbjct: 369  KRVDFSGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRQCVINGPNVHPGA 428

Query: 283  RMIRYPDGTARVLYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
            + I   D   ++   KF  R+  A  LK G +V+RHLEDGD+VLFNRQPSLH++SIM H 
Sbjct: 429  QQIIKKDSNHKISL-KFAKRDNEAKFLKIGDVVERHLEDGDIVLFNRQPSLHKLSIMSHY 487

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
            A+I PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEA+ LMGV+NNL TPKNGE 
Sbjct: 488  AKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAINLMGVKNNLSTPKNGEP 547

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++++TQDF+T+++L++ K+ F+DR  F+ +C YM D    + LP PAILKP  LWTGKQ+
Sbjct: 548  IISATQDFITAAYLLSNKENFFDRKTFTNICMYMVDANLHLQLPDPAILKPQALWTGKQV 607

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            FSVL+RP+    + VN+  K + +   ++      +     M  NDG++  RNSE++ G 
Sbjct: 608  FSVLMRPNKQDNILVNVDAKCRDFVPSMVPKGFAND-----MEANDGWLVIRNSEVMCGL 662

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + K+T+G+G KD ++ V+LRDYG  A    MNRL+KLSAR++ N GFSIGI DV P  EL
Sbjct: 663  MDKSTVGSGKKDSIFYVILRDYGPDAAVVAMNRLSKLSARYLTNMGFSIGISDVYPSAEL 722

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
            +  K +LI+  Y  C   I+ +    L+   G    +TLEA ++  L+++R  AGK C+ 
Sbjct: 723  NKSKARLIAAAYVECEQLIESFKNNTLEKSTGLSMEETLEAKLSGKLSQVRGAAGKECLR 782

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
            +L   +SPL+M+  GSKGS IN++QMVA VGQQ +GG R   GF DR+LPHFP+ +K+P 
Sbjct: 783  TLYASSSPLVMANSGSKGSAINVAQMVALVGQQIIGGSRVQEGFQDRTLPHFPKHSKQPP 842

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            AKGFVANSF++GL+  EF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD++
Sbjct: 843  AKGFVANSFFTGLTPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDT 902

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEI 820
            VR +GG IVQF +G DG+DP +MEG +  P+NF R   + +       +R L P +V++ 
Sbjct: 903  VRTSGGGIVQFQFGADGLDPLDMEGNA-VPVNFKRTWTQAETLTWNNEERSLLPYEVTKQ 961

Query: 821  VEKQLAA-----------------------YG--KESCSEAFLNSLRKFFEGQQDKLDKK 855
              + LA                        YG  +      FL ++ KF  G++     +
Sbjct: 962  CAEHLATFKAKFSRFGLRNGEPLSYDDASDYGVDEHDGGREFLAAVNKFI-GEKASHMGR 1020

Query: 856  IK-------FVED-------IGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKR 901
            ++       FV+D          +D+ +   +  ++ + ++E  L+ F + C  +Y   +
Sbjct: 1021 VRTKAGLHDFVDDPEVTGILYNEEDEREESRDYVNQVAKVSETTLKKFCELCLEKYSRAK 1080

Query: 902  VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIIT 961
            VE G A+GA+GAQSIGEPGTQMTLKTFHFAGVA MN+T GVPRIKEIIN +K I+TP + 
Sbjct: 1081 VEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMNLTAGVPRIKEIINASKTIATPFVK 1140

Query: 962  AELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINA 1021
              L  +     AR+VK   E  +  Q+  +++ +  + L +  + +  E +     CI  
Sbjct: 1141 CPLLNSKELEVARLVKAHTEYLVNRQIEVTVENIAHTILKNKKLKVRSEDLHVKGNCIFI 1200

Query: 1022 DIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
            ++  +  V T       +    LD            S +   ++ LK  +P + + G   
Sbjct: 1201 NVTHDGSVPTTARGAAAKGKPSLD---------EGGSDLLLRVHHLKRAVPELAISGYPE 1251

Query: 1082 VERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTL 1141
              R +I   E     V E      Y ++VEG GL+A +G EG+DG K KSN + E++  L
Sbjct: 1252 ATRAIINTSED---AVPE------YTVVVEGYGLRACIGTEGVDGTKVKSNSVMEMRDVL 1302

Query: 1142 GIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLML 1201
            GIEAAR  I +EI   M    M ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL L
Sbjct: 1303 GIEAARSTIANEIATVMA--DMDIDPRHMQLLADVMTYKGEVLGITRFGLSKMRDSVLQL 1360

Query: 1202 ASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK-IRQRDAVPPMLK 1256
            ASFEKT DHLF+A+   + DRIEGVSECIIMG  M +GTG  K +R  D  P  LK
Sbjct: 1361 ASFEKTPDHLFDAAAGMKTDRIEGVSECIIMGQTMGVGTGAFKVVRALDLTPEDLK 1416


>gi|169597423|ref|XP_001792135.1| hypothetical protein SNOG_01497 [Phaeosphaeria nodorum SN15]
 gi|160707519|gb|EAT91146.2| hypothetical protein SNOG_01497 [Phaeosphaeria nodorum SN15]
          Length = 1473

 Score = 1071 bits (2769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/1331 (44%), Positives = 815/1331 (61%), Gaps = 112/1331 (8%)

Query: 4    PKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA-VLGIIHDRSKV---- 58
            P M+ LR+T + K +++ C     K   CP C  + G V+K     L IIH+R       
Sbjct: 141  PDMDTLRRTAISKKVLEDCR----KKKTCPYCDALQGTVRKVPGHPLKIIHNRYDAFNRS 196

Query: 59   -----------TESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLY 107
                        E  Q F +A     +    +  A   ++P+  L LFK+++  DCE+L 
Sbjct: 197  TAKTKKPPAGKIEFDQSFETAKAANPDLDKHLKKAVDDMHPLRTLNLFKKISPEDCELLA 256

Query: 108  L---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEA 164
            +     RPE LI   + VPP+A+RPSV+ +G  + E+D+T ++  I Q ++ ++  L   
Sbjct: 257  MIPEDARPEMLIWEYMPVPPVALRPSVMQEGG-ATEDDVTNKIGDICQISSIIRAGLARG 315

Query: 165  NSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKR 224
                  +  W+ LQ+++A YINSD  G+     + + + GF QRLKGK GRFR NLSGKR
Sbjct: 316  FPLQILMEQWDFLQLQIAMYINSDAPGLK-QQGLQKTMRGFSQRLKGKGGRFRQNLSGKR 374

Query: 225  VEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARM 284
            V+++GRTVI PDPNL I EVA+P R+A+ILTYPE+V+ +NI+KL++ + NG +KYPGA  
Sbjct: 375  VDFSGRTVIGPDPNLSIDEVAVPQRVAKILTYPEKVTRYNIKKLQKLVLNGANKYPGANY 434

Query: 285  IRY---PDGTARVL-------YGKFRNQL---AVELKSGCIVDRHLEDGDVVLFNRQPSL 331
            I     PD   R +       + K  ++L   A  L+ G +V+RHLEDGD+VLFNRQPSL
Sbjct: 435  ILKDLGPDQDPRKVSLIALSRHDKKGDRLQGPAAALRFGDVVERHLEDGDIVLFNRQPSL 494

Query: 332  HRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNN 391
            H++SI+ HRA+I PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEA  LMGV+ N
Sbjct: 495  HKLSILSHRAKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEATELMGVKYN 554

Query: 392  LCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVD--------- 442
            L TPKNG  ++A+ QDF+T++F+++ K  FYDR  F  +  YM  G    D         
Sbjct: 555  LATPKNGTPIIAAIQDFITAAFILSNKSNFYDRRTFCQIVNYMFTGEGAYDPDTGKYLPI 614

Query: 443  -LPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET 501
             +P P I KP  LWTGKQ+F++L+RP+   RV VNL    K Y     R    +E     
Sbjct: 615  EIPPPVIWKPQALWTGKQVFNLLMRPNKQSRVLVNLEAGCKQYKPVQGRAPDLDE----- 669

Query: 502  MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA-HATSGCMNRLAKLSAR 560
               ND ++  RNSE++ G + K+T+G+G K+ ++ V++RD+G  HA  G MNRLA+LSAR
Sbjct: 670  ---NDAYLIIRNSEVMCGVMDKSTVGDGKKESVFYVMMRDFGPEHAVQG-MNRLARLSAR 725

Query: 561  WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
            W+ N+GFS+GI DV P + L+ KK  L+ E Y  C+  IK++ EGKLQ   GCD  QT+E
Sbjct: 726  WLTNNGFSLGISDVTPGEVLNQKKQALVEEAYAKCDKLIKDFKEGKLQRAAGCDEEQTME 785

Query: 621  AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
              I  IL+ +R+ AG  C   L   NSPL+M++CGSKGS IN+SQMVA VGQQ +GG R 
Sbjct: 786  VQIGGILSGVRQAAGDICFEELSRWNSPLLMAKCGSKGSNINVSQMVASVGQQMIGGARV 845

Query: 681  PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
             +GF  R+LPHFP+ A++PAAKGFV+NSFYSGL+ +EF FH M GREGLVDTAVKTA+TG
Sbjct: 846  ADGFHHRTLPHFPKAARQPAAKGFVSNSFYSGLTPSEFIFHAMSGREGLVDTAVKTAETG 905

Query: 741  YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
            YMSRRL+K+LEDLS QYD++VRN+ G +VQF YGDD +DP +MEG++ +P+ FDR     
Sbjct: 906  YMSRRLMKSLEDLSAQYDDTVRNSSGTVVQFQYGDDNLDPVDMEGRA-QPVAFDRTFSHA 964

Query: 801  KATCPPAGQRYLSPQQVS-------------------------EIVEKQLAAYGKESCSE 835
              +     +  L+P+ V                          E  +K  ++  ++    
Sbjct: 965  ITSTWDNSEPSLTPEAVRAHTLAKLNTERNKYPRFKLDGITPLEYNDKSDSSIDQKESLR 1024

Query: 836  AFLNSLRKFFEGQQDKLDKKIKF----VEDIGWDDKSQILEEVT--HKTSGITEKQLEVF 889
             FL++++ +  G+  KL+  +      +ED          E+ T     + I++  L+ F
Sbjct: 1025 DFLDTVQTYISGKAQKLETTLVHLGVSLEDCSTKRSEADREKYTLADGIAKISQTALDTF 1084

Query: 890  IQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII 949
            I  C ++Y   RV+ G A+GAIGAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEII
Sbjct: 1085 IDLCLTKYHRSRVQPGHAVGAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII 1144

Query: 950  NGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDM 1009
            N +  ISTP+IT  L    +E+AAR+VK R+EKT L  +   ++ V     A + + +D 
Sbjct: 1145 NASSTISTPVITCVLSNKISESAARIVKARVEKTYLRDIINYVEDVWHPTGAYVAMRIDW 1204

Query: 1010 ETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL---DFRKLEIF--------PPVDKS 1058
            +T+    + I    +  +I +   +K  +   KV       ++EI         P    S
Sbjct: 1205 DTVNALFVDITPHEIVNAINKHKPLKWGKAGTKVRISSSLIRVEIADPSASKKRPAAKAS 1264

Query: 1059 KIHFELY----SLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTG 1114
            K H E +     +KN++P V++KG     R +I    K++    +NG+  +  LLVEG G
Sbjct: 1265 KNHKEYFERVQQVKNLIPHVVIKGYDGCTRAII----KKETTPNKNGD-YECELLVEGYG 1319

Query: 1115 LQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLA 1174
            L+  +   GI+  KT SNH+ EV+  LGIEAAR  I+ EI+  M    M ID RHM LLA
Sbjct: 1320 LKDCLTTPGIEPYKTMSNHVMEVRTVLGIEAARATIMREISAVMG--NMDIDPRHMALLA 1377

Query: 1175 DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGI 1234
            D+MTF+G+V GITRFG+QK   SVL LASFEKT DHLF A+  G+ D I+GVSE IIMG 
Sbjct: 1378 DVMTFKGDVYGITRFGLQKTRDSVLQLASFEKTPDHLFEAAARGKTDTIDGVSESIIMGQ 1437

Query: 1235 PMPLGTGILKI 1245
             M LGTG L++
Sbjct: 1438 SMKLGTGALQV 1448


>gi|453086139|gb|EMF14181.1| DNA-directed RNA polymerase III subunit RPC1 [Mycosphaerella
            populorum SO2202]
          Length = 1484

 Score = 1070 bits (2768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/1314 (44%), Positives = 815/1314 (62%), Gaps = 90/1314 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA-VLGIIHDR---- 55
            +R P ++ LRK  + K I  +C     K   CP CG  NG V+K     + + H++    
Sbjct: 138  LRRPGLDGLRKDVITKKISAECR----KVKVCPHCGAYNGPVRKVAGHPIKMFHNKYAIY 193

Query: 56   ------SKVTESLQE-----FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
                  SKV     +     F  AI   KE +  +      L P+ VL + K++ +TD E
Sbjct: 194  TNSNAKSKVKPPEMQAFEKTFEEAIKVDKEIERHMKRVADDLTPLRVLNILKKVPNTDVE 253

Query: 105  VLYLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQE 160
            +L +      RPE +I T+I  PP+AIRPSV  + + S E+DIT +L  IIQ +  +   
Sbjct: 254  LLGMDPHSGGRPEYMIWTHIPAPPVAIRPSVAQE-TASTEDDITNKLGDIIQVSTLIAAT 312

Query: 161  LVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNL 220
            +      +K +  WE LQV++A YI+ ++ G+       + + GF QRLKGKQGRFRGNL
Sbjct: 313  IKAGQPLYKVMDMWEFLQVQIAMYIDGNLPGLGRDSAYGKAMRGFCQRLKGKQGRFRGNL 372

Query: 221  SGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYP 280
            SGKRV+++GRTVISPDPNL I EVA+P R+A I+TYPERV+ HN EKL+ C++ G   +P
Sbjct: 373  SGKRVDFSGRTVISPDPNLAIDEVAVPSRVAVIMTYPERVTKHNYEKLKACVKRGDKVHP 432

Query: 281  GARMIRYPDGTARVLY------GKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRM 334
            GA  +       R++       G  + ++A +L+ G IV+RHLEDGD+VLFNRQPSLH++
Sbjct: 433  GANFVIKGRDKRRLVLKVVGQKGDLK-KVADQLEIGDIVERHLEDGDIVLFNRQPSLHKL 491

Query: 335  SIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCT 394
            SI+ HRA+I PWRT R NE VCNPYNADFDGDEMN+HVPQTEEARTEA  LMGV+NNL T
Sbjct: 492  SILSHRAKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEATELMGVKNNLST 551

Query: 395  PKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVD----------LP 444
            PKNG  ++A+ QDF+T ++LI++KD F+ R  F+ +  +M + M   D          +P
Sbjct: 552  PKNGSPIIAAIQDFITGAYLISQKDRFFSRRHFTHVVGFMYNAMQAKDPYTGKEYPIVIP 611

Query: 445  TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
             PAI KP  LWTGKQ++++LI+PH +  V VNL  + K Y+      +      I  M  
Sbjct: 612  PPAIWKPQALWTGKQIWNLLIKPHPDYPVNVNLEARLKQYAPPTRPND------IPDMVD 665

Query: 505  NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
             D ++  RNSE++ G   KAT+G+G KD L+ V++RD+GA   +  M RLAKLSARW+G 
Sbjct: 666  TDSYLVIRNSEVMCGGFDKATIGDGKKDSLFYVIMRDFGADYAAAAMTRLAKLSARWLGE 725

Query: 565  HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
             GFSIGI DV P ++L+ +K  L+   Y  C+  I ++  GKL+   GCD  QT+E +++
Sbjct: 726  QGFSIGISDVYPSEKLTKRKLNLVETAYRKCDEIIHKFKTGKLERSAGCDEEQTMEIMLS 785

Query: 625  DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
             IL+++R++ G AC   L   N+P+ M++CGSKGS IN+SQMVA VGQQ +GG+R   GF
Sbjct: 786  GILSKVRQECGDACFAELSKYNAPMTMAKCGSKGSNINVSQMVAVVGQQIIGGKRVLEGF 845

Query: 685  IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
             DR+LPHF + + +P AKGFV +SF+SGL+ TEF FH M GREGLVDTAVKTA+TGYMSR
Sbjct: 846  QDRTLPHFLKASPDPLAKGFVFDSFFSGLTPTEFIFHAMSGREGLVDTAVKTAETGYMSR 905

Query: 745  RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATC 804
            RL+K+LEDLS QYD +VRN+ G IVQ  +GDDG+DP +MEG + +P+N DR       + 
Sbjct: 906  RLMKSLEDLSAQYDLTVRNSSGGIVQMKFGDDGLDPVDMEG-NAKPINMDRTWSHSVEST 964

Query: 805  PPAGQRYLSPQQVS----EIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVE 860
                +  L+  ++      ++ K+ A  G+ +     L    +  +   D+L+   +F++
Sbjct: 965  WDNSEACLTKDEIETYTHTVLNKERAKLGRYTDDGQALEYADERAK-STDQLEYSRQFLD 1023

Query: 861  DIG--WDDKSQILEEVTHKTSG------ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIG 912
            D+      K++ +     K +       IT+  L+ F+  C  ++   +VEAG A+GA+G
Sbjct: 1024 DVTNYVFTKTKKMTRSHEKLANSDAVFRITQSALQTFLHLCMLKFEKSKVEAGHAVGAVG 1083

Query: 913  AQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENA 972
            AQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT  L+    + A
Sbjct: 1084 AQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKVISTPVITCHLDSPYEDMA 1143

Query: 973  ARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTP 1032
            AR  K  +EKT LG +   ++ V  +    I + ++ + I +  L I  + + ++I +T 
Sbjct: 1144 ARFAKALMEKTYLGDIVDYVEDVWHANGCYINMRVNWQQIGNLGLRIGMEHLLDAIERTK 1203

Query: 1033 KIKLKQQHIKVLDFRKLEI---FPPVDKSK------------------IHFELYSLKNVL 1071
              K      +   +  + +    P  ++S+                  +  ++++LK  L
Sbjct: 1204 GFKTLGVSARNSGYNHIRVNISLPEKERSRRQTSASKGRITESDGSELMFMQVHTLKRKL 1263

Query: 1072 PMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKS 1131
            P V+VKG     R +I + +K+ R    NG K+   + VEG GL+  M  +G+DG +TKS
Sbjct: 1264 PEVVVKGYPDAHRAIIKKDDKKDR----NG-KEPISVFVEGYGLKQCMTTDGVDGYRTKS 1318

Query: 1132 NHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGI 1191
            N++ E +  LGIEAAR  IIDEI+  M +  M ID RHM LLAD+MT++GEVLGITRFG+
Sbjct: 1319 NNVMECRDVLGIEAARKTIIDEIDAVMGS--MDIDPRHMQLLADVMTYKGEVLGITRFGL 1376

Query: 1192 QKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             KM  SVL LASFEKT DHLF A+   + D IEGVSECIIMG  M +GTG +K+
Sbjct: 1377 AKMRDSVLQLASFEKTPDHLFEAAAKMKKDDIEGVSECIIMGQSMSVGTGAMKV 1430


>gi|119191177|ref|XP_001246195.1| hypothetical protein CIMG_05636 [Coccidioides immitis RS]
          Length = 1430

 Score = 1070 bits (2767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/1283 (45%), Positives = 797/1283 (62%), Gaps = 90/1283 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKVT 59
            MR   ++ LR+  + K I  +C     K   C  C  +NG+VKKA  + L I HD+ +  
Sbjct: 138  MRRQGIDNLRRMQINKRINDRCR----KTRTCYVCHAVNGVVKKAGTSALKITHDKFRAF 193

Query: 60   ESLQE-----------FASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCE 104
             +              F  +    K S   +          LNP+ VL LF+R++D DCE
Sbjct: 194  NASTSAKKVPPPSKLVFDRSFEEAKRSNTDIEKHFKKVQDDLNPLRVLKLFRRISDEDCE 253

Query: 105  VLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP++IRPSV  +G+ S E+D+T +L  I+Q+N +L+  +
Sbjct: 254  LLGLNPEEVRPEMFLWQYIPAPPVSIRPSVGQEGA-STEDDLTAKLGDIVQSNINLKNAI 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
             +       +  W+ +Q+++A YINSDV G+       +P+ G  QRLKGKQGRFRGNLS
Sbjct: 313  NKGAPVQTIIECWDYMQLQIAVYINSDVPGLQ-KADFGKPIRGICQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL+I EVA+P  +A  +TYPERV+ +N EKLR+ ++NG   +PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPG 431

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +     T +V   YG   N +A +L+ G +V+RHLEDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYLSKRGTTFKVFLKYGNL-NLMADQLEEGDVVERHLEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
              ++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491  FVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++A+ QDF+T+++L++ KD FYDR +F+  C YM     + DLP PA+LKP  LWTGKQ
Sbjct: 551  PIIAAIQDFITAAYLLSSKDNFYDRGSFTQTCGYMLQPGTKFDLPPPAVLKPQMLWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F+VL+RP     V VNL    + +       +G        + PNDG++  RNSE++ G
Sbjct: 611  VFNVLMRPSKESPVLVNLDAACREFRA----PKGTPR----DLDPNDGWLCIRNSEIMCG 662

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K+T+G+G KD ++ V+LRD+G    +  MNRL++LSARW  N GFSIGI DV P   
Sbjct: 663  VMDKSTIGSGKKDSVFYVMLRDFGPQVAAEAMNRLSRLSARWFTNIGFSIGITDVYPGDS 722

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K +L+ E Y  C+  I+ +  GKL+  PG D  Q +E+ I+ IL+++R+ AG+ C+
Sbjct: 723  LLQAKKQLVEEAYAQCDALIQLFKAGKLEKAPGGDEQQNMESQISGILSKVRQQAGEQCI 782

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   NSPLIM+  GSKGS IN++QM+A VGQQ + G+R  +GF DR+LPHFP+ A++P
Sbjct: 783  AELSKWNSPLIMATSGSKGSTINVAQMIALVGQQIIAGQRVQDGFQDRTLPHFPKYARQP 842

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AKGFV NSF+SGL  +EFFFH + GREGL+DTAVKTA+TGYMSRRL+K+LEDLS +YD+
Sbjct: 843  PAKGFVRNSFFSGLIPSEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLSSRYDD 902

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +MEGK+ +P++FDR     + T      R L P +V +
Sbjct: 903  TVRNSSSNIVQFQYGDDKLDPVDMEGKA-KPVHFDRTFTHAETTTYSKEDRGLLPSEVID 961

Query: 820  IVEKQLAA-YGKESCSEAFLNSLRKFFEGQQ--DKLDKKIKFVEDIGWDDKSQILEEVTH 876
            +  + LA    K    +   NSL          D+L+    F++ I  +D  Q   +  H
Sbjct: 962  LCRQMLAPERAKLDRFDLLGNSLEYTDRSDHGIDQLESNRDFLQSI--EDYIQAKADRLH 1019

Query: 877  KTSG-----------------ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEP 919
              +G                 ++ K L  FI +C ++Y+  +VE G A+GA+GAQSIGEP
Sbjct: 1020 SVTGTEADTLEGQMALSHTVKLSAKTLTTFITSCLTKYKKAQVEPGHAVGAVGAQSIGEP 1079

Query: 920  GTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGR 979
            GTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTPIIT EL   ++  AA++VKGR
Sbjct: 1080 GTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPIITCELVNKEDVRAAQIVKGR 1139

Query: 980  IEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHL------CINADIVKESIVQTPK 1033
            +EKT +  +   I+   TS +A I I +D  TIQ   L       +NA I K    ++  
Sbjct: 1140 VEKTFIKDIIYYIEEAWTSSVAYINIKIDFSTIQALQLELTLRDILNA-IKKHKRFRSDD 1198

Query: 1034 IKLKQ--QHIKVL--------DFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVE 1083
            +K +    HI +            K E       S  +  L  LK +LP + V G     
Sbjct: 1199 LKFRSFGSHIHIFVDQATTKTSLTKAE--QAATGSDPYIRLKHLKRLLPTIQVLGHPQCS 1256

Query: 1084 RVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
            R +I   E                LLVEG GL+A M  +GI G +T++N+I E +  LGI
Sbjct: 1257 RAIIRTDETNTTNT----------LLVEGYGLRACMTTDGIFGTRTRTNNIMETKDVLGI 1306

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            EAAR  I+DEI++ MK   M ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LAS
Sbjct: 1307 EAARTTIVDEISDVMK--DMGIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLAS 1364

Query: 1204 FEKTADHLFNASVNGRDDRIEGV 1226
            FEKTADHLF+A   GR D +EG 
Sbjct: 1365 FEKTADHLFDAGGAGRTDLVEGT 1387


>gi|226294925|gb|EEH50345.1| DNA-directed RNA polymerase III subunit RPC1 [Paracoccidioides
            brasiliensis Pb18]
          Length = 1458

 Score = 1068 bits (2761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/1303 (45%), Positives = 812/1303 (62%), Gaps = 92/1303 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKVT 59
            +R P ++ LR+  ++K I ++C     K   C  C  ING+VKKA  + L I H++ +  
Sbjct: 138  LRRPGIDNLRRMQIVKKINERCR----KTRTCYNCNAINGVVKKAGTSALKISHEKFRAF 193

Query: 60   ESL---------------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
             +                + F  A     E +     A   L+P+ VL LF+R+++ DCE
Sbjct: 194  NTSTSVKKVPPPSKIFFDRSFEEAKKSNPEIEKHFKKAHDDLHPLRVLKLFRRISNEDCE 253

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP+ IRPSV  + + S E+D+T +L  IIQ+N +L+  L
Sbjct: 254  LLGLNPAEARPEVFLWQYIPAPPVCIRPSVGQEAA-STEDDLTAKLGDIIQSNMNLKNAL 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
             +       +  W+ +Q+++A YINSDV G+       +P+ GF QRLKGKQGRFRGNLS
Sbjct: 313  NKGAPVQTIIECWDHMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++ RTVISPDPNL+I EVA+PI +A  +TYPE+V+ +N EKLRQC++NG   +PG
Sbjct: 372  GKRVDFSSRTVISPDPNLRIDEVAVPILVAMNMTYPEQVTRYNKEKLRQCVRNGTKTWPG 431

Query: 282  ARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +  +  +    + +G   N +A EL+ G IV+RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYVLKKSQNFKMNLKFGN-PNLIANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
              ++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491  FVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLVTPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++++ QDF+T++++++ K+ FYDR  F+ +C YM     R DLP P+ILKP  LWTGKQ
Sbjct: 551  PIISAIQDFITAAYMLSSKNVFYDRKTFTHVCLYMLLPGTRFDLPPPSILKPQMLWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F++L+RP+ +  V VNL    + +       +G        +  ND ++  RNSE++ G
Sbjct: 611  VFNILMRPNKDSPVLVNLDAACREFKA----PKGPPR----DLDANDRWLCIRNSEVMCG 662

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
             + K T+G+G KD ++ V+LRDYG    +  MNRL++L ARWI + GFSIGI DV P   
Sbjct: 663  VMDKYTIGSGKKDSVFYVMLRDYGPAIAAEGMNRLSRLCARWITDLGFSIGITDVYPGDR 722

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L ++K +L+   Y  C+  I+++  GKL+  PGCD   T+E +I+ IL+++R+ AG  C+
Sbjct: 723  LLEEKKELVEHAYAQCDEVIQKFKSGKLEKAPGCDEQMTMENIISGILSKVRQQAGDLCI 782

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   N+PLIM+  GSKGS IN++QMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P
Sbjct: 783  SELSRWNTPLIMATSGSKGSNINVAQMVALVGQQIIGGQRVQDGFQDRTLPHFPKHARQP 842

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AKGFV NSF+SGL+ TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD 
Sbjct: 843  PAKGFVQNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDG 902

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VRN+   IVQF YGDD +DP +MEG +  P+NFDR     + T      + L P ++  
Sbjct: 903  TVRNSSSSIVQFQYGDDKLDPVDMEGNA-RPVNFDRTFTHSEVTTFDNSDKGLLPDEIMT 961

Query: 820  IVEKQLAAYGKESCS-EAF-------------------LNSLRKFFEGQQDKLDKKIKFV 859
            + +  LA   KE  S + +                   L S R + +  +D +  K + +
Sbjct: 962  LCQSLLA---KERASLDRYDLMGNRLDYMDRSDNGIDQLESARDYLQSIEDYISSKAEKL 1018

Query: 860  EDIG-WDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGE 918
              I   ++  Q      + T+ I+ + L  FI +C  +Y+  +VE G A+GA+GAQSIGE
Sbjct: 1019 RSIDGGNNNGQGGGRGINHTAKISARTLAAFITSCLVKYKKAQVEPGHAVGAVGAQSIGE 1078

Query: 919  PGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKG 978
            PGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT +L    +  AA++VKG
Sbjct: 1079 PGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVITCQLVNKGDLRAAQIVKG 1138

Query: 979  RIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCI----------------NAD 1022
            R+EKT +  +   I+   T   A I I +D  TIQ+  L +                +AD
Sbjct: 1139 RVEKTFMRDIIYYIEEDWTGNDAYINIKIDFSTIQNLQLELGLQDILSAIKKHKRFKSAD 1198

Query: 1023 IVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTV 1082
            +   S      I + QQ  +    +  E     D    +  L  LK ++P + V G    
Sbjct: 1199 LKFRSFGSHIHIFVDQQATRTALSKSEEAATGADP---YIRLKHLKRLIPTIQVLGHPQC 1255

Query: 1083 ERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLG 1142
             R +I   E                LLVEG GL+  M  +GIDG  T++N+I E +  LG
Sbjct: 1256 SRAIIRTDETCTTNT----------LLVEGYGLRDCMTTDGIDGRNTRTNNIMETRLVLG 1305

Query: 1143 IEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLA 1202
            IEAAR  I++EI E MK   M+ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LA
Sbjct: 1306 IEAARTTIVEEIGEVMK--DMAIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLA 1363

Query: 1203 SFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            SFEKTADHLF+A   GR D IEGVSECII+G  + LGTG +++
Sbjct: 1364 SFEKTADHLFDAGGAGRTDLIEGVSECIIVGKGISLGTGSMEV 1406


>gi|326469885|gb|EGD93894.1| DNA-directed RNA polymerase III largest subunit [Trichophyton
            tonsurans CBS 112818]
          Length = 1444

 Score = 1066 bits (2758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/1300 (45%), Positives = 808/1300 (62%), Gaps = 90/1300 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDR---- 55
            +R P ++ LR+  + K I  +C     K   C  C  ING VKKA    L I+HD+    
Sbjct: 138  LRRPGLDNLRRMQINKRINVRCR----KTPVCYYCNAINGTVKKASTGALKIVHDKFRAF 193

Query: 56   -----SKVTESLQEFASAITHTKESKAAVNVATYI------LNPVNVLFLFKRMTDTDCE 104
                 +K      + A   +  +  KA  ++  +       LNP+ VL LF+R+++ DCE
Sbjct: 194  NASLSAKKIPPPSKLAFDRSFEEAKKANPDIEKHYRRVFDDLNPLRVLKLFRRISNEDCE 253

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP+ IRPSV  +G+ S E+D+T +L  I+Q+N +L+  L
Sbjct: 254  LLSLNVDGARPEYFLWQFIPAPPVPIRPSVGQEGA-STEDDLTAKLGDIVQSNLNLKMAL 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
             +       +  W+ +Q+++A YINSD+ G+  +    + + G  QRLKGKQGRFRGNLS
Sbjct: 313  DKGAPVQTIIECWDYMQLQIAVYINSDIPGLQ-NTDSKKTIRGLCQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL+I EVA+P  +A  +TYPERV+ +N EKLRQCI+NG   +PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPG 431

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +     + R+   YG   N +A +L+ G IV+RHLEDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYLIKEGNSFRLFLKYGNL-NMIANQLREGDIVERHLEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
              ++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV++NL TPKNGE
Sbjct: 491  FVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++A+ QDF+T+++L++ KD F+DR  F+ +C  M D   R +LP PA +KP  LWTGKQ
Sbjct: 551  PIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLSMLDSSTRFELPPPATIKPQMLWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +FSVL+RP+ +  V VNL    +    KL++ +  +      +C NDG++  RNSE++ G
Sbjct: 611  VFSVLMRPNKDCPVKVNLDAACRQL--KLVKGQPRD------LCENDGWLCIRNSEMLCG 662

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
               K+T+G G KD ++ V+ RD+G  A +  MNRL+KLSARW+ N GFSIGI DV P + 
Sbjct: 663  VADKSTIGAGKKDNIFFVIQRDFGYAAAAEAMNRLSKLSARWLTNKGFSIGITDVYPGES 722

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K  LI+  ++ C+  I   ++ K Q+    D+ QT E  IT ILN++R+ AG+ C+
Sbjct: 723  LVRLKDTLINTAFQQCDDLITAASKEKPQMGKS-DSRQTAENEITGILNKVRQQAGEYCI 781

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   N+PLIM+ CGSKGS IN+SQMVA VGQQS+   R   GF DR+LPHF R ++  
Sbjct: 782  SELSKHNAPLIMATCGSKGSNINVSQMVAVVGQQSIENARVSKGFQDRTLPHFARHSQHA 841

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AKGFV NSF+SGL+ TEF FH M GREGL+DTAVKTA+TGYMSRRL+K+LEDLS +YDN
Sbjct: 842  LAKGFVRNSFFSGLTPTEFLFHAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDN 901

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VR++   I+QF YGDD +DP NME  S +P++FDR     ++T     ++ LS  ++  
Sbjct: 902  TVRDSSSFIIQFQYGDDQLDPVNMEA-SAKPVHFDRTFTHAESTTYDKDEKGLSADEILA 960

Query: 820  IVEKQLAAYGKESCSEAFLNSLRKF----------FEGQQDKLDKKIKFVEDIGWDDKSQ 869
            + E+ +A   K+      L +   +          +E  +D L    ++V       +  
Sbjct: 961  LCEELIAPERKKLVRYDLLGNTLSYKAETDFATDQWESNRDFLSSIEEYVAAKAAQLRPS 1020

Query: 870  ILEE------VTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQM 923
              EE       TH TS I+ + L+ FI +C  +Y    VE G +IGAIGAQSIGEPGTQM
Sbjct: 1021 DNEEGKEQMAFTH-TSKISARTLKAFITSCLDKYMRAHVEPGHSIGAIGAQSIGEPGTQM 1079

Query: 924  TLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKT 983
            TLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTPIIT EL    +   A +VKGR+EK 
Sbjct: 1080 TLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPIITCELVNKTDMRIAEIVKGRVEKL 1139

Query: 984  LLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKV 1043
             L  +   I+   +   + I I +D  TI+   L +    +  +I +    K        
Sbjct: 1140 FLKDIVYYIEENRSQTSSFINIKVDFSTIKKLQLELTLRQILLAIKKHKAFKAAD----- 1194

Query: 1044 LDFRKL--EIFPPVDK----------------SKIHFELYSLKNVLPMVIVKGIKTVERV 1085
            L FR     I   VD+                S  +  +  L+ +LP + V G     R 
Sbjct: 1195 LTFRSFNSHIHIYVDEGASMAGVSVSEQKITGSDPYIRINYLRRILPNIQVFGYPDCTRA 1254

Query: 1086 VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
            VI   EK    +          LLVEG GL+A M  +GI+G +T++NH+ E++  LGIEA
Sbjct: 1255 VIRVGEKVATNI----------LLVEGYGLRACMTTDGIEGHRTRTNHVMEMRDVLGIEA 1304

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
            AR  IIDEI+  M   GM+ID RHM LLAD+MT++GEVLGITRFG+ K+  SVL LASFE
Sbjct: 1305 ARTTIIDEISSVMS--GMAIDPRHMQLLADVMTYKGEVLGITRFGLAKIRDSVLQLASFE 1362

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            KTADHLF+A   GR D ++GVSECIIMG  + LGTG +++
Sbjct: 1363 KTADHLFDAGGAGRRDTVQGVSECIIMGKTISLGTGSMEV 1402


>gi|302500232|ref|XP_003012110.1| hypothetical protein ARB_01618 [Arthroderma benhamiae CBS 112371]
 gi|291175666|gb|EFE31470.1| hypothetical protein ARB_01618 [Arthroderma benhamiae CBS 112371]
          Length = 1444

 Score = 1066 bits (2757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/1300 (45%), Positives = 808/1300 (62%), Gaps = 90/1300 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDR---- 55
            +R P ++ LR+  + K I  +C     K   C  C  ING VKKA    L I+HD+    
Sbjct: 138  LRRPGLDNLRRMQINKRINVRCR----KTPVCYYCNAINGTVKKASTGALKIVHDKFRAF 193

Query: 56   -----SKVTESLQEFASAITHTKESKAAVNVATYI------LNPVNVLFLFKRMTDTDCE 104
                 +K      + A   +  +  K+  ++  +       LNP+ VL LF+R+++ DCE
Sbjct: 194  NASLSAKKIPPPSKLAFDRSFEEAKKSNPDIEKHYRRVFDDLNPLRVLKLFRRISNEDCE 253

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP+ IRPSV  +G+ S E+D+T +L  I+Q+N +L+  L
Sbjct: 254  LLSLNVDGARPEYFLWQFIPAPPVPIRPSVGQEGA-STEDDLTAKLGDIVQSNLNLKMAL 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
             +       +  W+ +Q+++A YINSD+ G+  +    + + G  QRLKGKQGRFRGNLS
Sbjct: 313  DKGAPVQTIIECWDYMQLQIAVYINSDIPGLQ-NTDSKKTIRGLCQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL+I EVA+P  +A  +TYPERV+ +N EKLRQCI+NG   +PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPG 431

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +     + R+   YG   N +A +L+ G IV+RHLEDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYLIKEGNSFRLFLKYGNL-NMIANQLREGDIVERHLEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
              ++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV++NL TPKNGE
Sbjct: 491  FVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++A+ QDF+T+++L++ KD F+DR  F+ +C  M D   R +LP PA +KP  LWTGKQ
Sbjct: 551  PIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLSMLDSSTRFELPPPATIKPQMLWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +FSVL+RP+ +  V VNL    +    KL++ +  +      +C NDG++  RNSE++ G
Sbjct: 611  VFSVLMRPNKDCPVKVNLDAACRQL--KLVKGQPRD------LCENDGWLCIRNSEMLCG 662

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
               K+T+G G KD ++ V+ RD+G  A +  MNRL+KLSARW+ N GFSIGI DV P + 
Sbjct: 663  VADKSTIGAGKKDNIFFVIQRDFGYAAAAEAMNRLSKLSARWLTNKGFSIGITDVYPGES 722

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K  LI+  ++ C+  I   ++ K Q+    D+ QT E  IT ILN++R+ AG+ C+
Sbjct: 723  LVKLKDTLINTAFQQCDDLITAASKEKPQMGKS-DSRQTAENEITGILNKVRQQAGEYCI 781

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   N+PLIM+ CGSKGS IN+SQMVA VGQQS+   R   GF DR+LPHF R ++  
Sbjct: 782  SELSKHNAPLIMATCGSKGSNINVSQMVAVVGQQSIENARVSKGFQDRTLPHFARHSQHA 841

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AKGFV NSF+SGL+ TEF FH M GREGL+DTAVKTA+TGYMSRRL+K+LEDLS +YDN
Sbjct: 842  LAKGFVRNSFFSGLTPTEFLFHAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDN 901

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VR++   I+QF YGDD +DP NME  S +P++FDR     ++T     ++ LS  ++  
Sbjct: 902  TVRDSSSFIIQFQYGDDQLDPVNMEA-SAKPVHFDRTFTHAESTTYDKDEKGLSADEILA 960

Query: 820  IVEKQLAAYGKESCSEAFLNSLRKF----------FEGQQDKLDKKIKFVEDIGWDDKSQ 869
            + E+ +A   K+      L +   +          +E  +D L    ++V       +  
Sbjct: 961  LCEELIAPERKKLVRYDLLGNTLSYKAENDFATDQWESNRDFLSSIEEYVAAKAAQLRPS 1020

Query: 870  ILEE------VTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQM 923
              EE       TH TS I+ + L+ FI +C  +Y    VE G +IGAIGAQSIGEPGTQM
Sbjct: 1021 DNEEGKEQMAFTH-TSKISARTLKAFITSCLDKYMRAHVEPGHSIGAIGAQSIGEPGTQM 1079

Query: 924  TLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKT 983
            TLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTPIIT EL    +   A +VKGR+EK 
Sbjct: 1080 TLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPIITCELVNKTDMRIAEIVKGRVEKL 1139

Query: 984  LLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKV 1043
             L  +   I+   +   + I I +D  TI+   L +    +  +I +    K        
Sbjct: 1140 FLKDIVYYIEENRSQTSSFINIKVDFSTIKKLQLELTLRQILLAIKKHKAFKAAD----- 1194

Query: 1044 LDFRKL--EIFPPVDK----------------SKIHFELYSLKNVLPMVIVKGIKTVERV 1085
            L FR     I   VD+                S  +  +  L+ +LP + V G     R 
Sbjct: 1195 LTFRSFNSHIHIYVDEGASMAGVSVSEQKITGSDPYIRINYLRRILPNIQVFGYPDCTRA 1254

Query: 1086 VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
            VI   EK    +          LLVEG GL+A M  +GI+G +T++NH+ E++  LGIEA
Sbjct: 1255 VIRVGEKVATNI----------LLVEGYGLRACMTTDGIEGHRTRTNHVMEMRDVLGIEA 1304

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
            AR  IIDEI+  M   GM+ID RHM LLAD+MT++GEVLGITRFG+ K+  SVL LASFE
Sbjct: 1305 ARTTIIDEISSVMS--GMAIDPRHMQLLADVMTYKGEVLGITRFGLAKIRDSVLQLASFE 1362

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            KTADHLF+A   GR D ++GVSECIIMG  + LGTG +++
Sbjct: 1363 KTADHLFDAGGAGRRDTVQGVSECIIMGKTISLGTGSMEV 1402


>gi|327294643|ref|XP_003232017.1| DNA-directed RNA polymerase III largest subunit [Trichophyton rubrum
            CBS 118892]
 gi|326465962|gb|EGD91415.1| DNA-directed RNA polymerase III largest subunit [Trichophyton rubrum
            CBS 118892]
          Length = 1444

 Score = 1065 bits (2754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/1300 (45%), Positives = 808/1300 (62%), Gaps = 90/1300 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDR---- 55
            +R P ++ LR+  + K I  +C     K   C  C  ING VKKA    L I+HD+    
Sbjct: 138  LRRPGLDNLRRMQINKRINVRCR----KTPVCFYCNAINGTVKKASTGALKIVHDKFRAF 193

Query: 56   -----SKVTESLQEFASAITHTKESKAAVNVATYI------LNPVNVLFLFKRMTDTDCE 104
                 +K      + A   +  +  K+  ++  +       LNP+ VL LF+R+++ DCE
Sbjct: 194  NASLSAKKIPPPSKLAFDRSFEEAKKSNPDIEKHYRRVFDDLNPLRVLKLFRRISNEDCE 253

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP+ IRPSV  +G+ S E+D+T +L  I+Q+N +L+  L
Sbjct: 254  LLSLNVDGARPEYFLWQFIPAPPVPIRPSVGQEGA-STEDDLTAKLGDIVQSNLNLKMAL 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
             +       +  W+ +Q+++A Y+NSD+ G+  +    + + G  QRLKGKQGRFRGNLS
Sbjct: 313  DKGAPVQTIIECWDYMQLQIAVYVNSDIPGLQ-NTDSKKTIRGLCQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL+I EVA+P  +A  +TYPERV+ +N EKLRQCI+NG   +PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPG 431

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +     + R+   YG   N +A +L+ G IV+RHLEDGD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYLIKEGNSFRLFLKYGNL-NMIANQLREGDIVERHLEDGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
              ++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV++NL TPKNGE
Sbjct: 491  FVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++A+ QDF+T+++L++ KD F+DR  F+ +C  M D   R +LP PA +KP  LWTGKQ
Sbjct: 551  PIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLSMLDSSTRFELPPPATIKPQMLWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +FSVL+RP+ +  V VNL    +    KL++ +  +      +C NDG++  RNSE++ G
Sbjct: 611  VFSVLMRPNKDCPVKVNLDAACRQL--KLVKGQPRD------LCENDGWLCIRNSEMLCG 662

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
               K+T+G G KD ++ V+ RD+G  A +  MNRL+KLSARW+ N GFSIGI DV P + 
Sbjct: 663  VADKSTIGAGKKDNIFFVIQRDFGYAAAAEAMNRLSKLSARWLTNKGFSIGITDVYPGES 722

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K  LI+  ++ C+  I   ++ K Q+    D+ QT E  IT ILN++R+ AG+ C+
Sbjct: 723  LVRLKDTLINTAFQQCDDLITAASKEKPQMGKS-DSRQTAENEITGILNKVRQQAGEYCI 781

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   N+PLIM+ CGSKGS IN+SQMVA VGQQS+   R   GF DR+LPHF R ++  
Sbjct: 782  SELSKHNAPLIMATCGSKGSNINVSQMVAVVGQQSIENARVSKGFQDRTLPHFARHSQHA 841

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AKGFV NSF+SGL+ TEF FH M GREGL+DTAVKTA+TGYMSRRL+K+LEDLS +YDN
Sbjct: 842  LAKGFVRNSFFSGLTPTEFLFHAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDN 901

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VR++   I+QF YGDD +DP NME  S +P++FDR     ++T     ++ LS  ++  
Sbjct: 902  TVRDSSSFIIQFQYGDDQLDPVNMEA-SAKPVHFDRTFTHAESTTYDKDEKGLSADEILA 960

Query: 820  IVEKQLAAYGKESCSEAFLNSLRKF----------FEGQQDKLDKKIKFVEDIGWDDKSQ 869
            + E+ +A   K+      L +   +          +E  +D L    ++V       +  
Sbjct: 961  LCEELIAPERKKLVRYDLLGNTLSYKAKNDFATDQWESNRDFLSSIEEYVAAKATQLRPS 1020

Query: 870  ILEE------VTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQM 923
              EE       TH TS I+ + L+ FI +C  +Y    VE G +IGAIGAQSIGEPGTQM
Sbjct: 1021 DNEEGKEQMAFTH-TSKISARTLKAFITSCLDKYMRAHVEPGHSIGAIGAQSIGEPGTQM 1079

Query: 924  TLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKT 983
            TLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTPIIT EL    +   A +VKGR+EK 
Sbjct: 1080 TLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPIITCELVNKTDMRIAEIVKGRVEKL 1139

Query: 984  LLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKV 1043
             L  +   I+   +   + I I +D  TI+   L +    +  +I +    K        
Sbjct: 1140 FLKDIVYYIEENRSQTSSFINIKVDFSTIKKLQLELTLRQILLAIKKHKAFKAAD----- 1194

Query: 1044 LDFRKL--EIFPPVDK----------------SKIHFELYSLKNVLPMVIVKGIKTVERV 1085
            L FR     I   VD+                S  +  +  L+ +LP + V G     R 
Sbjct: 1195 LTFRSFNSHIHIYVDEGASMAGVSVSEQKITGSDPYIRINYLRRILPNIQVFGYPDCTRA 1254

Query: 1086 VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
            VI   EK    +          LLVEG GL+A M  +GI+G +T++NH+ E++  LGIEA
Sbjct: 1255 VIRVGEKVATNI----------LLVEGYGLRACMTTDGIEGHRTRTNHVMEMRDVLGIEA 1304

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
            AR  IIDEI+  M   GM+ID RHM LLAD+MT++GEVLGITRFG+ K+  SVL LASFE
Sbjct: 1305 ARTTIIDEISSVMS--GMAIDPRHMQLLADVMTYKGEVLGITRFGLAKIRDSVLQLASFE 1362

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            KTADHLF+A   GR D ++GVSECIIMG  + LGTG +++
Sbjct: 1363 KTADHLFDAGGAGRRDTVQGVSECIIMGKTISLGTGSMEV 1402


>gi|302661310|ref|XP_003022324.1| hypothetical protein TRV_03535 [Trichophyton verrucosum HKI 0517]
 gi|291186264|gb|EFE41706.1| hypothetical protein TRV_03535 [Trichophyton verrucosum HKI 0517]
          Length = 1444

 Score = 1058 bits (2735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/1300 (45%), Positives = 806/1300 (62%), Gaps = 90/1300 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDR---- 55
            +R P ++ LR+  + K I  +C     K   C  C  ING VKKA    L I+HD+    
Sbjct: 138  LRRPGLDNLRRMQINKRINVRCR----KTPVCYYCNAINGTVKKASTGALKIVHDKFRAF 193

Query: 56   -----SKVTESLQEFASAITHTKESKAAVNVATYI------LNPVNVLFLFKRMTDTDCE 104
                 +K      + A   +  +  K+  ++  +       LNP+ VL LF+R+++ DCE
Sbjct: 194  NASLSAKKIPPPSKLAFDRSFEEAKKSNPDIEKHYRRVFDDLNPLRVLKLFRRISNEDCE 253

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP+ IRPSV  +G  S E+D+T +L  I+Q+N +L+  L
Sbjct: 254  LLSLNVDGARPEYFLWQFIPAPPVPIRPSVGQEGP-STEDDLTAKLGDIVQSNLNLKMAL 312

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
             +       +  W+ +Q+++A YINSD+ G+  +    + + G  QRLKGKQGRFRGNLS
Sbjct: 313  DKGAPVQTIIECWDYMQLQIAVYINSDIPGLQ-NTDSKKTIRGLCQRLKGKQGRFRGNLS 371

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL+I EVA+P  +A  +TYPERV+ +N EKLRQ I+NG   +PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQRIRNGTKTWPG 431

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +     + R+   YG   N +A +L+ G IV+RHLE+GD+VLFNRQPSLH++SI+ H
Sbjct: 432  ANYLIKEGNSFRLFLKYGNL-NMIANQLREGDIVERHLENGDIVLFNRQPSLHKLSILSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
              ++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV++NL TPKNGE
Sbjct: 491  FVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSNLATPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++A+ QDF+T+++L++ KD F+DR  F+ +C  M D   R +LP PA +KP  LWTGKQ
Sbjct: 551  PIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLSMLDSSTRFELPPPATIKPQMLWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +FSVL+RP+ +  V VNL    +    KL++ +  +      +C NDG++  RNSE++ G
Sbjct: 611  VFSVLMRPNKDCPVKVNLDAACRQL--KLVKGQPRD------LCENDGWLCIRNSEMLCG 662

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
               K+T+G G KD ++ V+ RD+G  A +  MNRL+KLSARW+ N GFSIGI DV P + 
Sbjct: 663  VADKSTIGAGKKDNIFFVIQRDFGYAAAAEAMNRLSKLSARWLTNKGFSIGITDVYPGES 722

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K  LI+  ++ C+  I   ++ K Q+    D+ QT E  IT ILN++R+ AG+ C+
Sbjct: 723  LVKLKDTLINTAFQQCDDLIAAASKEKPQMGKS-DSRQTAENEITGILNKVRQQAGEYCI 781

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              +   N+PLIM+ CGSKGS IN+SQMVA VGQQS+   R   GF DR+LPHF R ++  
Sbjct: 782  SEVSKHNAPLIMATCGSKGSNINVSQMVAVVGQQSIENARVSKGFQDRTLPHFARHSQHA 841

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AKGFV NSF+SGL+ TEF FH M GREGL+DTAVKTA+TGYMSRRL+K+LEDLS +YDN
Sbjct: 842  LAKGFVRNSFFSGLTPTEFLFHAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDN 901

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VR++   I+QF YGDD +DP NME  S +P++FDR     ++T     ++ LS  ++  
Sbjct: 902  TVRDSSSFIIQFQYGDDQLDPVNMEA-SAKPVHFDRTFTHAESTTYDKDEKGLSADEILA 960

Query: 820  IVEKQLAAYGKESCSEAFLNSLRKF----------FEGQQDKLDKKIKFVEDIGWDDKSQ 869
            + E+ +A   K+      L +   +          +E  +D L    ++V       +  
Sbjct: 961  LCEELIAPERKKLVRYDLLGNTLSYKAENDFATDQWESNRDFLSSIEEYVAAKAAQLRPS 1020

Query: 870  ILEE------VTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQM 923
              EE       TH TS I+ + L+ FI +C  +Y    VE G +IGAIGAQSIGEPGTQM
Sbjct: 1021 DNEEGKEQMAFTH-TSKISARTLKAFITSCLDKYMRAHVEPGHSIGAIGAQSIGEPGTQM 1079

Query: 924  TLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKT 983
            TLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTPIIT EL    +   A +VKGR+EK 
Sbjct: 1080 TLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPIITCELVNKTDMRIAEIVKGRVEKL 1139

Query: 984  LLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKV 1043
             L  +   I+   +   + I I +D  TI+   L +    +  +I +    K        
Sbjct: 1140 FLKDIVYYIEENRSQTSSFINIKVDFSTIKKLQLELTLRQILLAIKKHKAFKAAD----- 1194

Query: 1044 LDFRKL--EIFPPVDK----------------SKIHFELYSLKNVLPMVIVKGIKTVERV 1085
            L FR     I   VD+                S  +  +  L+ +LP + V G     R 
Sbjct: 1195 LTFRSFNSHIHIYVDEGASMAGVSVSEQKITGSDPYIRINYLRRILPNIQVFGYPDCTRA 1254

Query: 1086 VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
            VI   EK    +          LLVEG GL+A M  +GI+G +T++NH+ E++  LGIEA
Sbjct: 1255 VIRVGEKVATNI----------LLVEGYGLRACMTTDGIEGHRTRTNHVMEMRDVLGIEA 1304

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
            AR  IIDEI+  M   GM+ID RHM LLAD+MT++GEVLGITRFG+ K+  SVL LASFE
Sbjct: 1305 ARTTIIDEISSVMS--GMAIDPRHMQLLADVMTYKGEVLGITRFGLAKIRDSVLQLASFE 1362

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            KTADHLF+A   GR D ++GVSECIIMG  + LGTG +++
Sbjct: 1363 KTADHLFDAGGAGRRDTVQGVSECIIMGKTISLGTGSMEV 1402


>gi|195355413|ref|XP_002044186.1| GM22579 [Drosophila sechellia]
 gi|194129475|gb|EDW51518.1| GM22579 [Drosophila sechellia]
          Length = 1369

 Score = 1052 bits (2720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/1284 (45%), Positives = 799/1284 (62%), Gaps = 87/1284 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            + NP    L K  L   ++ K    A K  KCP CG  NG VKK   +L I+HD  K  +
Sbjct: 127  LHNPNFSYLGKKALHVQMLAK----AKKVTKCPHCGSPNGGVKKGPGLLKILHDPYKGRK 182

Query: 61   SLQEFASAIT---HTKESKAAVN--VATYI----LNPVNVLFLFKRMTDTDCEVLYLSER 111
                F S +    H+ ++   +N  +  Y     L P+ VL LF+++   D  +L +   
Sbjct: 183  MDLLFTSNMNEMLHSTQANRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSH 242

Query: 112  ---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               P+ LI+T + VPP  IRPSV+ +  + + E+D+T +   I+  N  +Q+ +      
Sbjct: 243  DAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKI 302

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                  W+ LQ+ VA Y ++  RG+             VQRLKGKQGRFR NLSGKRV++
Sbjct: 303  ELIHEDWDFLQLHVALY-STTTRGI-------------VQRLKGKQGRFRCNLSGKRVDF 348

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY 287
            +GRTVISPDPNL I +V +P+R+A+ILTYPERV+  NI  +R+ ++NGP  +PGA  ++ 
Sbjct: 349  SGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQ 408

Query: 288  PDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
               + +  + YG  R ++A ELK G +V+RHL D D+VLFNRQPSLH+MSIMCHRA++ P
Sbjct: 409  RGSSFKKYLAYGN-REKVAQELKCGDVVERHLRDEDIVLFNRQPSLHKMSIMCHRAKVQP 467

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE  C PYNADFDGDEMN+H+PQTEEAR EAL+LMG Q+NL TPKNGEIL+A+T
Sbjct: 468  QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAAT 527

Query: 406  QDFLTSSFLITRKDTFYDRA-AFSLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS 462
            QDF+T  +L+T+K+ F  +  A  L  C++   D    + LP PA+LKP  LWTGKQ+FS
Sbjct: 528  QDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIKLPPPALLKPRRLWTGKQMFS 587

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            +L+RP+ + +V +N+  K + Y+       G+++     +C ND +++ RNSEL+ G + 
Sbjct: 588  LLMRPNDDSQVRLNMVNKGRNYT-------GNKD-----LCSNDSWIHIRNSELMCGVMD 635

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            KAT+G+G K  ++ +LLRD+G    +  M RLA++++ ++ N GFS GI DV P K+L  
Sbjct: 636  KATMGSGTKQCIFYLLLRDFGELHATKAMWRLARIASYFLQNRGFSFGISDVTPSKKLLQ 695

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K  L++  Y  CN  I     G LQ +PGC   +TLE+V+   L+ IRE A K C   L
Sbjct: 696  HKELLLNNGYAKCNEYIDLLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCFAEL 755

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NS LIM+  GSKGS INISQM+ACVGQQ++ G+R PNGF +R+LPHF R +  PAA+
Sbjct: 756  HPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIPAAR 815

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFV NSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+K LEDL + YD +VR
Sbjct: 816  GFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVR 875

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            NA   +V  +YG DG+DP +ME ++ +P++       ++A  P    R L+ +++SE +E
Sbjct: 876  NAVNEMVDTIYGGDGLDPVSMETRN-KPVDLVHQYDNLRAQHPQGKDRPLNAEKMSEALE 934

Query: 823  KQLAAYGKESCSEAF-------LNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVT 875
              L         + F       +N++ K     Q + +K I                   
Sbjct: 935  TLLKTPEFAEARDDFKLDVRNHINTVSKRIGQLQKRYEKCINLC---------------- 978

Query: 876  HKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVAS 935
            H+   +T +QL  F++    RY     E GTA+GAI AQSIGEPGTQMTLKTFHFAGVAS
Sbjct: 979  HQIECLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVAS 1038

Query: 936  MNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIV 995
            MNITQGVPRI EIIN  K ISTPIITAELE   +   AR VK RIEKT L +++  +++V
Sbjct: 1039 MNITQGVPRIVEIINATKTISTPIITAELENCHSMEFARQVKARIEKTTLAELSSYVEVV 1098

Query: 996  MTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL--DFRKLEIFP 1053
                   + I +DM  I+   L I+ D +  SI+++ ++++K   ++V+    R +    
Sbjct: 1099 CGPYSCYLAIGVDMARIKLLGLHIDLDTIVFSILKS-RMRVKPTQVEVVASQSRIVVRVE 1157

Query: 1054 PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGT 1113
                S I+ EL  L   L  V+V G+  + R VIA        V +  +   Y+L +EG 
Sbjct: 1158 ATRTSTINAELARLALCLQNVVVAGLPNINRAVIA--------VDDARQPPTYKLCIEGY 1209

Query: 1114 GLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1173
            GL+ V+   G+ G +T+SN+I E+ QTLGIEAAR  I+ EI E M+ HGMS+D RH+MLL
Sbjct: 1210 GLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLL 1269

Query: 1174 ADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMG 1233
            A  MT RGEVLGITR G+ KM +SV  LASFEKTADHLF+A+  G+ D I GVSE II+G
Sbjct: 1270 ASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILG 1329

Query: 1234 IPMPLGTGILKIRQ---RDAVPPM 1254
            +P  +GTGI K+ Q      VPP+
Sbjct: 1330 MPACIGTGIFKLLQLHEDKQVPPI 1353


>gi|171677863|ref|XP_001903882.1| hypothetical protein [Podospora anserina S mat+]
 gi|170937000|emb|CAP61658.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1521

 Score = 1051 bits (2717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/1361 (43%), Positives = 817/1361 (60%), Gaps = 150/1361 (11%)

Query: 9    LRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR------------- 55
            + +T ++K I ++C     K   C  CG + G ++K ++ + ++HD+             
Sbjct: 150  MARTAVLKRINEQCR----KVRNCYHCGDLQGTIRK-LSCMKLVHDKFVAYNKSTAQKKV 204

Query: 56   ---SKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
               SK+ E    F SA  H  E       A   ++P+ VL LFK +   DCE+L L    
Sbjct: 205  APESKI-EFDASFESAKAHFAELGKHTRRAMDDMHPLKVLNLFKEINSVDCELLGLDPAE 263

Query: 111  -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
             RPE  +   +  PP+ IRPSV  + S SNE+DIT +L  I+  +A L++ +++      
Sbjct: 264  GRPEMFLWRYLPAPPLCIRPSVAQE-SASNEDDITTKLAEIVIYSAHLREAMLKGAPLPS 322

Query: 170  SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
             +  WE LQ++V  Y+NSDV G+       +   GF QRLKGKQGRFRGNLSGKRV+++G
Sbjct: 323  LMEQWEFLQLQVGMYVNSDVPGL-VQQGFGKVTRGFCQRLKGKQGRFRGNLSGKRVDFSG 381

Query: 230  RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
            RTVISPDPNL I +VA+P R+A+ LTYPERV  +NI+KL+ C++NGP +YPGA  I    
Sbjct: 382  RTVISPDPNLSIEQVAVPERVAKNLTYPERVHANNIQKLKACVRNGPTEYPGALQITKNQ 441

Query: 290  GTA---RVLYGKFRNQL----AVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRAR 342
            G     + L    +  +    A  L+ G +V+RHLED D+VLFNRQPSLH++SIM H A+
Sbjct: 442  GEENEMKFLLKHMKPHILEKNADNLRIGDVVERHLEDNDIVLFNRQPSLHKLSIMSHYAK 501

Query: 343  IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILV 402
            I PWRT R NE VC+PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNLCTPKNGE ++
Sbjct: 502  IRPWRTFRLNECVCSPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLCTPKNGEPII 561

Query: 403  ASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFS 462
            A+TQDF+T+++L++ KD FYDR++F+ +C  M  G   ++LP PAILKP  LWTGKQ+F+
Sbjct: 562  AATQDFITAAYLLSGKDRFYDRSSFTYICTQMLLGDTYLELPPPAILKPKALWTGKQIFN 621

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            V++RP+    V VNL  K K Y NK      D +I       +D F+  RNSE+I G++ 
Sbjct: 622  VMMRPNKESPVLVNLDAKNKVY-NKGNLQPPDMDI-------DDSFLVVRNSEVICGRMD 673

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K+T+G G K+ ++ V+LRDYGA   +  MNRLAKL AR +   GFSIG+ DV P + L++
Sbjct: 674  KSTVGEGKKNSVFYVILRDYGADYAAATMNRLAKLCARSLTLRGFSIGVGDVFPSQALTE 733

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K  L+ +   VC+  I +   G L+  PGCD  +TLE  ++  L+ +R+ AG  C  +L
Sbjct: 734  HKLMLLEKATTVCDGFISQAENGTLEKAPGCDMKETLETKLSGTLSAVRQAAGSYCTENL 793

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               N+PLIM++ GSKGS IN++QM+ACVGQQ +GG+R  +GF +R+LPHF +  K  AAK
Sbjct: 794  SRNNAPLIMAKSGSKGSEINVAQMIACVGQQIIGGKRVADGFQNRTLPHFEKGDKRAAAK 853

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFV NSFY+GL  TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD++VR
Sbjct: 854  GFVKNSFYTGLHPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVR 913

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVS---- 818
             + G IVQF YG D +DP +MEG +  P+NFDR     +       ++ L P ++     
Sbjct: 914  TSEGGIVQFQYGADRLDPVDMEGDA-RPVNFDRTWNHSQTITWNNSEKGLLPSEIQKLTK 972

Query: 819  EIVEKQLAAY-------------------------------GKESCSEAFLNSLRKFFEG 847
            E++++Q A Y                                +   +  +LNS++ +   
Sbjct: 973  ELLDRQRALYVRRDMLTGEVITGLTDEQIRTSTDRAAYMAVDEHDAAREYLNSVQTYITQ 1032

Query: 848  QQDKLDKKIKFVE--------------------------DIGWDDKSQIL-EEVTHKTSG 880
            +  KL +  K V                           DI  DD+++   ++    T+ 
Sbjct: 1033 RATKLARIRKSVGLDPGVLEDDLAMQAAVNRVNKGGSEMDIDLDDEARAKGQKHADLTAK 1092

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++E  L  FI+ C  +Y+  +VE G A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQ
Sbjct: 1093 VSEASLRKFIELCLEKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQ 1152

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRL 1000
            GVPRIKEIIN +K ISTP+IT  LE   + +AAR VK RIEKT +  +   +  V    +
Sbjct: 1153 GVPRIKEIINASKTISTPVITCVLENTKDVSAARAVKHRIEKTYIKDILDYVDDVWLQDV 1212

Query: 1001 ASIVIALDMETIQD-AHLCINADIVKESIVQTPKIKLK---------QQHIKVLDF---- 1046
            A IV+ L+ + +++   + I    + ++IV+  K+KLK         +  I+VL      
Sbjct: 1213 AKIVLRLEKDGLENLEQIGITTTDIADAIVKAKKLKLKIEPEDLKVNKNVIEVLVHNTWQ 1272

Query: 1047 -----------------RKLEIFPPVDKSKIHFELYS--LKNVLPMVIVKGIKTVERVVI 1087
                             + L +  P D+S   F+L    LK +LP V + G     R +I
Sbjct: 1273 DATAARKAARQRAAALEKGLTVANPGDESAADFQLRVNFLKRMLPEVPIAGHPETTRAII 1332

Query: 1088 AEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAAR 1147
                K             + +LVEG GL+A M  EG+ G K  +N + E +  LGIEAAR
Sbjct: 1333 NVDSK----------TSAHTVLVEGYGLRACMTTEGVVGTKCLTNSVMECRDVLGIEAAR 1382

Query: 1148 ICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKT 1207
              I  EI + M    M+ID RHM LLAD+MT++G++LGITRFG+ KM  SVL LASFEKT
Sbjct: 1383 TTIAFEIQQVMG--DMNIDPRHMELLADVMTYKGDILGITRFGLAKMRDSVLQLASFEKT 1440

Query: 1208 ADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
             DHLF+A+   + DRI GVSECIIMG  M +GTG  ++ +R
Sbjct: 1441 PDHLFDAAAGMKTDRILGVSECIIMGQTMSIGTGSFQVVRR 1481


>gi|225678717|gb|EEH17001.1| DNA-directed RNA polymerase III subunit RPC1 [Paracoccidioides
            brasiliensis Pb03]
          Length = 1449

 Score = 1045 bits (2702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/1300 (44%), Positives = 805/1300 (61%), Gaps = 95/1300 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKVT 59
            +R P ++ LR+  ++K I ++C     K   C  C  ING+VKKA  + L I H++ +  
Sbjct: 138  LRRPGIDNLRRMQIVKKINERCR----KTRTCYNCNAINGVVKKAGTSALKISHEKFRAF 193

Query: 60   ESL---------------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
             +                + F  A     E +     A   L+P+ VL LF+R+++ DCE
Sbjct: 194  NTSTSVKKVPPPSKIFFDRSFEEAKKSNPEIEKHFKKAHDDLHPLRVLKLFRRISNEDCE 253

Query: 105  VLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEA 164
            +L L+ R     ++      +A+      + + S E+D+T +L  IIQ+N +L+  L + 
Sbjct: 254  LLGLNLRKLDRGVS------VAVYSRSACEAA-STEDDLTAKLGDIIQSNMNLKNALNKG 306

Query: 165  NSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKR 224
                  +  W+ +Q+++A YINSDV G+       +P+ GF QRLKGKQGRFRGNLSGKR
Sbjct: 307  APVQTIIECWDHMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLSGKR 365

Query: 225  VEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARM 284
            V+++ RTVISPDPNL+I EVA+PI +A  +TYPE+V+ +N EKLRQC++NG   +PGA  
Sbjct: 366  VDFSSRTVISPDPNLRIDEVAVPILVAMNMTYPEQVTRYNKEKLRQCVRNGTKTWPGANY 425

Query: 285  I--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRAR 342
            +  +  +    + +G   N +A EL+ G IV+RH+EDGD+VLFNRQPSLH++SI+ H  +
Sbjct: 426  VLKKSQNFKMNLKFGN-PNLIANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFVK 484

Query: 343  IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILV 402
            + P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE ++
Sbjct: 485  VRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLVTPKNGEPII 544

Query: 403  ASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFS 462
            ++ QDF+T++++++ K+ FYDR  F+ +C YM     R DLP P+ILKP  LWTGKQ+F+
Sbjct: 545  SAIQDFITAAYMLSSKNVFYDRKTFTHVCLYMLLPGTRFDLPPPSILKPQMLWTGKQVFN 604

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            +L+RP+ +  V VNL    + +       +G        +  ND ++  RNSE++ G + 
Sbjct: 605  ILMRPNKDSPVLVNLDAACREFKA----PKGTPR----DLDANDRWLCIRNSEVMCGVMD 656

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K T+G+G KD ++ V+LRDYG    +  MNRL++L ARWI + GFSIGI DV P   L +
Sbjct: 657  KYTIGSGKKDSVFYVMLRDYGPAIAAEGMNRLSRLCARWITDLGFSIGITDVYPGDRLLE 716

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
            +K +L+   Y  C+  I+++  GKL+  PGCD   T+E +I+ IL+++R+ AG  C+  L
Sbjct: 717  EKKELVEHAYAQCDEVIQKFKSGKLEKAPGCDEQMTMENIISGILSKVRQQAGDLCISEL 776

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               N+PLIM+  GSKGS IN++QMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P AK
Sbjct: 777  SRWNTPLIMATSGSKGSNINVAQMVALVGQQIIGGQRVQDGFQDRTLPHFPKHARQPPAK 836

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFV NSF+SGL+ TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD +VR
Sbjct: 837  GFVQNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDGTVR 896

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            N+   IVQF YGDD +DP +MEG +  P+NFDR     + T      + L P ++  + +
Sbjct: 897  NSSSSIVQFQYGDDKLDPVDMEG-NARPVNFDRTFTHSEVTTFDNSDKGLLPDEIMTLCQ 955

Query: 823  KQLAAYGKESCS-EAF-------------------LNSLRKFFEGQQDKLDKKIKFVEDI 862
              LA   KE  S + +                   L S R + +  +D +  K + +  I
Sbjct: 956  SLLA---KERASLDRYDLMGNRLDYMDRSDNGIDQLESARDYLQSIEDYISSKAEKLRSI 1012

Query: 863  G-WDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGT 921
               ++  Q      + T+ I+ + L  FI +C  +Y+  +VE G A+GA+GAQSIGEPGT
Sbjct: 1013 DGGNNNGQGGGRGINHTAKISARTLAAFITSCLVKYKKAQVEPGHAVGAVGAQSIGEPGT 1072

Query: 922  QMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIE 981
            QMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT +L    +  AA++VKGR+E
Sbjct: 1073 QMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVITCQLVNKGDLRAAQIVKGRVE 1132

Query: 982  KTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCI----------------NADIVK 1025
            KT +  +   I+   T   A I I +D  TIQ+  L +                +AD+  
Sbjct: 1133 KTFMRDIIYYIEEDWTGNDAYINIKIDFSTIQNLQLELGLQDILSAIKKHKRFKSADLKF 1192

Query: 1026 ESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERV 1085
             S      I + QQ  +    +  E     D    +  L  LK ++P + V G     R 
Sbjct: 1193 RSFGSHIHIFVDQQATRTALSKSEEAATGADP---YIRLKHLKRLIPTIQVLGHPQCSRA 1249

Query: 1086 VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
            +I   E                LLVEG GL+  M  +GIDG  T++N+I E +  LGIEA
Sbjct: 1250 IIRTDETCTTNT----------LLVEGYGLRDCMTTDGIDGRNTRTNNIMETRLVLGIEA 1299

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
            AR  I++EI E MK   M+ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LASFE
Sbjct: 1300 ARTTIVEEIGEVMK--DMAIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFE 1357

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            KTADHLF+A   GR D IEGVSECII+G  + LGTG +++
Sbjct: 1358 KTADHLFDAGGAGRTDLIEGVSECIIVGKGISLGTGSMEV 1397


>gi|357609436|gb|EHJ66444.1| hypothetical protein KGM_02886 [Danaus plexippus]
          Length = 1072

 Score = 1044 bits (2700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/1063 (51%), Positives = 713/1063 (67%), Gaps = 45/1063 (4%)

Query: 196  MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
             Q  +P  G VQRLKGKQGRFRGNLSGKRV+++ RTVISPDPNL+I EV +P+ +A+ILT
Sbjct: 20   FQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILT 79

Query: 256  YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF--RNQLAVELKSGCIV 313
            YPERV   N++ LRQ ++NGPD +PGA  ++   G +   Y K+  R+++A ELK G  V
Sbjct: 80   YPERVFPANLQWLRQLVRNGPDVHPGANYVQQ-RGVSHKKYLKYGNRDKIAQELKCGDTV 138

Query: 314  DRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVP 373
            +RHL DGDVVLFNRQPSLH++SIMCHRAR+ P RT RFNE VC PYNADFDGDEMNMH+P
Sbjct: 139  ERHLVDGDVVLFNRQPSLHKLSIMCHRARVQPQRTFRFNECVCTPYNADFDGDEMNMHLP 198

Query: 374  QTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRA-AFSLMCC 432
            QTEEAR EAL+LMG ++NL TP+NGE+L+A+TQDF+T  +LIT++D+F+    A  L+ C
Sbjct: 199  QTEEARAEALILMGNKSNLVTPRNGELLIAATQDFITGGYLITQRDSFFTLPEARQLVAC 258

Query: 433  YMG--DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIR 490
             +   D   RVD+P PAILKP  LWTGKQ+FS++++P+    V  NL  K K Y+     
Sbjct: 259  LLAGPDSTMRVDMPPPAILKPRMLWTGKQIFSLIMKPNKRCEVKANLETKGKNYTGN--- 315

Query: 491  TEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGC 550
                     + MC  D +V  RNSELI G + K+TLG+G K+ ++ +LLRD+G       
Sbjct: 316  ---------QDMCVQDSYVIIRNSELICGSMDKSTLGSGTKNSVFYILLRDWGEEYAVRG 366

Query: 551  MNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLK 610
            M RLA++++ ++ N GFS GI DV P  +L + K KL+   Y  C+  I E  +G LQ +
Sbjct: 367  MWRLARMASYYMMNRGFSFGIIDVTPGNKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQ 426

Query: 611  PGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACV 670
            PGC   +TLEA++   L+ IRE A KAC   L   N+PLIM+Q GSKGS INISQM+ACV
Sbjct: 427  PGCSMEETLEAIMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACV 486

Query: 671  GQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLV 730
            GQQ++ G+R PNGF DRSLPHF R +K PAA+GFV NSFYSGL+ TEFFFHTMGGREGLV
Sbjct: 487  GQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYSGLTPTEFFFHTMGGREGLV 546

Query: 731  DTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEP 790
            DTAVKTA+TGY+ RRL+K+LEDL + YD +VRNA   +VQF YG DG+DP+ MEG+   P
Sbjct: 547  DTAVKTAETGYLQRRLVKSLEDLVLHYDMTVRNATSEVVQFRYGSDGLDPSYMEGRD-RP 605

Query: 791  LNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQD 850
            ++  R+L  V+A+C    +  L  + +    E+ LA    ++C   F   L +F +G   
Sbjct: 606  VDLTRVLRHVRASCRTQDEEPLDGEGIVVAAEETLALDDFKTCPPEFKAELLEFLKGTAA 665

Query: 851  KLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGA 910
            K+    +     G          V  +   +T  QL  FI+ C  +Y+   +E GTA+GA
Sbjct: 666  KVRSLRERYASAG---------PVALQLERLTLTQLVRFIRVCHEKYQRSIIEPGTAVGA 716

Query: 911  IGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNE 970
            + AQSIGEPGTQMTLKTFHFAGVASMNITQGVPR+KEIIN +K ISTPIITAEL    ++
Sbjct: 717  LAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASKNISTPIITAELMEPTDQ 776

Query: 971  NAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQ 1030
              AR VKGR+EKT LG++   I  V       +++ LD E I+   LC+  D+   SIV 
Sbjct: 777  EFARRVKGRVEKTTLGEITTYIDEVYLPHECFLLVRLDAERIR--LLCLEVDV--HSIVY 832

Query: 1031 ---TPKIKLKQQHIKVLDFRKLEIFPPVDKSK--IHFELYSLKNVLPMVIVKGIKTVERV 1085
               T K+KLK  +++ +    +++     K    ++  L  L   LP V+VKG+  V R 
Sbjct: 833  SICTSKLKLKPGNVQAVSEWAIKVHAEASKHGGWLNVALQQLARQLPSVVVKGLSKVSRA 892

Query: 1086 VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
            VIA          + G   +Y+L VEG GL+ VM   GIDG +T SN+I EV  TLGIEA
Sbjct: 893  VIA--------CDDTGPVNRYKLCVEGDGLREVMATYGIDGRRTTSNNILEVFHTLGIEA 944

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
            A   I+ E+   M  HGM++D RH+ LLA  M  RGEVLGITR+G+ +M +SVL LASFE
Sbjct: 945  AAGTIMSEVEAVMAGHGMAVDGRHVALLAAQMCARGEVLGITRYGLARMKESVLNLASFE 1004

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            KTADHLF+A+  G+ DRIEGVSECII+G+P  +GTG+L++  +
Sbjct: 1005 KTADHLFDAAYYGQRDRIEGVSECIILGVPAGIGTGVLQLLHK 1047


>gi|315056651|ref|XP_003177700.1| DNA-directed RNA polymerase III subunit RPC1 [Arthroderma gypseum CBS
            118893]
 gi|311339546|gb|EFQ98748.1| DNA-directed RNA polymerase III subunit RPC1 [Arthroderma gypseum CBS
            118893]
          Length = 1429

 Score = 1041 bits (2693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/1294 (45%), Positives = 795/1294 (61%), Gaps = 92/1294 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDR---- 55
            +R P ++ LR+  + K I  +C     K   C  C  ING VKKA    L I+HD+    
Sbjct: 137  LRRPGLDNLRRMQINKRINVRCR----KTPICYYCNAINGTVKKASTGALKIVHDKFRAF 192

Query: 56   -----SKVTESLQEFASAITHTKESKAAVNVATYI------LNPVNVLFLFKRMTDTDCE 104
                 +K      + A   +  +  K+  ++  +       LNP+ VL LF+R+++ DCE
Sbjct: 193  NASLSAKKIPPPSKLAFDRSFEEAKKSNPDIEKHYRRVFDDLNPLRVLKLFRRISNEDCE 252

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP+ IRPSV  +G+ S E+D+T +L  I+Q+N +L+  L
Sbjct: 253  LLSLNVDGARPEYFLWQFIPAPPVPIRPSVGQEGA-STEDDLTAKLGDIVQSNLNLKMAL 311

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
             +       +  W+ +Q+++A YINSD+ G+  +    + + G  QRLKGKQGRFRGNLS
Sbjct: 312  DKGAPVQTIIECWDYMQLQIAVYINSDIPGLQ-NTDSKKTIRGLCQRLKGKQGRFRGNLS 370

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL+I EVA+P  +A  +TYPERV+ +N EKLRQCI+NG   +PG
Sbjct: 371  GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPG 430

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +     + R+   YG   N +A +L+ G +V+RHLEDGD+VLFNRQPSLH++SI+ H
Sbjct: 431  ANYLIKEGNSFRLFLKYGNL-NMIANQLREGDVVERHLEDGDIVLFNRQPSLHKLSILSH 489

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
              ++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV++NL TPKNGE
Sbjct: 490  FVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSNLATPKNGE 549

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++A+ QDF+T+++L++ KD F+DR  F+ +C  M D   R +LP PA +KP  LWTGKQ
Sbjct: 550  PIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLSMLDSSTRFELPPPATIKPQMLWTGKQ 609

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +FSVL+RP+ +  V VNL    +    KL++ +  +      +C NDG++  RNSE++ G
Sbjct: 610  VFSVLMRPNKDSPVKVNLDAACRQL--KLVKGQPRD------LCENDGWLCIRNSEMLCG 661

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
               K+T+G G KD ++ V+ RD+G  A +  MNRL+KLSARW+ N GFSIGI DV P + 
Sbjct: 662  VADKSTIGAGKKDNIFFVIQRDFGYAAAAEAMNRLSKLSARWLTNKGFSIGITDVYPGES 721

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K  LI+  ++ C+  I   ++ K Q+    D+ QT E  IT ILN++R+ AG+ C+
Sbjct: 722  LVRLKDTLINTAFQQCDDLITAASKEKPQMGKS-DSRQTAENEITGILNKVRQQAGEYCI 780

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   N+PLIM+ CGSKGS IN+SQMVA VGQQS+   R   GF DR+LPHF R ++  
Sbjct: 781  SELSKHNAPLIMATCGSKGSNINVSQMVAVVGQQSIENARVSKGFQDRTLPHFARHSQHA 840

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AKGFV NSF+SGL+ TEF FH M GREGL+DTAVKTA+TGYMSRRL+K+LEDLS +YDN
Sbjct: 841  LAKGFVRNSFFSGLTPTEFLFHAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDN 900

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VR++   I+QF YGDD +DP NME  S +P++FDR     ++T      + LS  ++  
Sbjct: 901  TVRDSSSFIIQFQYGDDQLDPVNMEA-SAKPVHFDRTFTHAESTTYDRNDKGLSADEILV 959

Query: 820  IVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTS 879
            + E+ +A   K+      L +   +  G     D+         W+     L  +    +
Sbjct: 960  LCEELIAPERKKLVRYDLLGNTLAYKAGNDFDTDQ---------WESNRDFLSSIEEYVA 1010

Query: 880  GITEKQ--LEVFIQTCF--------SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFH 929
                +Q  L  +I   F        S  R K +     I AIGAQSIGEPGTQMTLKTFH
Sbjct: 1011 AKAAQQTFLISYIPFPFILLLLVDPSARRSKPLSRRAWIRAIGAQSIGEPGTQMTLKTFH 1070

Query: 930  FAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVA 989
            FAGVA M+ITQGVPRIKEIIN +K ISTPIIT EL    +   A +VKGR+EK  L  + 
Sbjct: 1071 FAGVAGMSITQGVPRIKEIINASKEISTPIITCELVNKTDMRIAEIVKGRVEKLFLKDIV 1130

Query: 990  KSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR-- 1047
              I+   +   + I I +D  TI+   L +    +  +I +    K        L FR  
Sbjct: 1131 YYIEENRSQTSSFINIKVDFSTIKKLQLELTLRQILLAIKKHKAFKATD-----LTFRSF 1185

Query: 1048 KLEIFPPVDK----------------SKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKE 1091
            K  I   VD+                S  +  +  L+ +LP + V G     R VI   E
Sbjct: 1186 KSHIHIYVDEGASMAGVSVSEQKITGSDPYIRINYLRRILPNIQVFGYPDCTRAVIRVGE 1245

Query: 1092 KEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICII 1151
            K    +          LLVEG GL+A M  +GI+G +T++NH+ E++  LGIEAAR  II
Sbjct: 1246 KVATNI----------LLVEGYGLRACMTTDGIEGHRTRTNHVMEMRDVLGIEAARTTII 1295

Query: 1152 DEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHL 1211
            DEI+  M   GM+ID RHM LLAD+MT++GEVLGITRFG+ K+  SVL LASFEKTADHL
Sbjct: 1296 DEISSVMS--GMAIDPRHMQLLADVMTYKGEVLGITRFGLAKIRDSVLQLASFEKTADHL 1353

Query: 1212 FNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            F+A   GR D ++GVSECIIMG  + LGTG +++
Sbjct: 1354 FDAGGAGRHDTVQGVSECIIMGKTISLGTGSMEV 1387


>gi|391343926|ref|XP_003746256.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC1-like [Metaseiulus occidentalis]
          Length = 1386

 Score = 1038 bits (2683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/1268 (44%), Positives = 789/1268 (62%), Gaps = 70/1268 (5%)

Query: 5    KMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK------V 58
            +++ + K  L   I++KC  +  K   CP+C ++NG VKKA  +L I+HDR++       
Sbjct: 135  ELDYVTKKHLHTEILEKCRKLQGKT--CPKCQFVNGFVKKA-GMLKIMHDRTRNKPKKRT 191

Query: 59   TESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKL 115
             E +    S +   K+   A +    +++ +  L LF+R+ + D  +L+++    RPE L
Sbjct: 192  KEEIDAEDSDLKAGKDGLPAPSTEIELVDAMKCLHLFERIPEYDVPLLFMNAEIGRPENL 251

Query: 116  IITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGW 174
            I T + VPP+ IRPSV  D  + +NE+D+T +L  +I  N  +++           +   
Sbjct: 252  IQTRVLVPPLCIRPSVASDFRAGTNEDDLTVKLTEMIFLNDVIERHRQTNAKPQMIVEDR 311

Query: 175  ETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVIS 234
            + LQ++ A Y+N ++ GVP  MQ  RP  G +QRLKGK+GRFR NLSGKRV+++GRTVIS
Sbjct: 312  DFLQLQFALYVNGEISGVPLHMQPKRPTKGIIQRLKGKEGRFRQNLSGKRVDFSGRTVIS 371

Query: 235  PDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARV 294
            PDPNL I +V IP+ MA+ILT+PE V+ HN++ +++ + NGPDK+PGA  I   +   + 
Sbjct: 372  PDPNLHIDQVGIPVHMAKILTFPEMVTRHNLDLMKKMVMNGPDKHPGANFIEGRNKLKKF 431

Query: 295  LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNES 354
            L    R QLA  L+ G IV+RHL DGDVVLFNRQPSLH++SIM H+A ++P RTLRFNE 
Sbjct: 432  LKYGNREQLAQNLRVGDIVERHLTDGDVVLFNRQPSLHKLSIMAHKAVVLPHRTLRFNEC 491

Query: 355  VCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFL 414
            VC PYNADFDGDEMN+H+PQT EAR EA++LM    N+ TP+NGE L+ + QDF+T  +L
Sbjct: 492  VCTPYNADFDGDEMNIHMPQTYEARAEAMVLMATTANIVTPRNGEPLIGAIQDFITGGYL 551

Query: 415  ITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFSVLIRPHANM 471
            +T KD  +DR     +      G D    V+LP PAILKP  LWTGKQ+FS++++P  + 
Sbjct: 552  LTHKDEMFDRETACHLISQFVAGRDVSTTVELPHPAILKPKVLWTGKQIFSLILKPSKSS 611

Query: 472  RVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNK 531
             V ++L  K K  +              E MC ND +V  RNSEL+ G++ K T+G+G+K
Sbjct: 612  DVRIHLRAKNKNXTKN------------EDMCTNDNYVIMRNSELLCGRMDKGTMGSGSK 659

Query: 532  DGLYSVLLRDYGAHATSGCMNRLAKLSARW-IGNHGFSIGIDDVQPKKELSDKKGKLISE 590
            + ++ +LLRDY A   +  M RLA++SA + +   GFSIGI DV P   L  +K +L+  
Sbjct: 660  NSIFYLLLRDYSAQHAADAMWRLARISAFFLLSTRGFSIGIGDVTPGASLVAQKRELVRV 719

Query: 591  NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLI 650
             Y  C   I++ ++G L  +PGC   QTLEA+    L+ IR+  G  C   L    SPL+
Sbjct: 720  GYSRCQEYIRKLDQGTLPAQPGCTEEQTLEALCLKELSSIRDKTGNICTEELHQTCSPLV 779

Query: 651  MSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFY 710
            M+ CGSKGS INISQM  CVGQQ++ G R  NGF DRSLPHF RK K+P A+GFV +SF+
Sbjct: 780  MALCGSKGSFINISQMATCVGQQAISGHRVGNGFEDRSLPHFERKTKDPDARGFVEDSFF 839

Query: 711  SGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQ 770
            +GL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRLIK+LED+ + YD+SVR++ G ++Q
Sbjct: 840  TGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLIKSLEDMMLNYDSSVRSSTGDVIQ 899

Query: 771  FLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGK 830
            F YG D +DPA +EGK    ++F+R+L  VKA+      RY  P +++E  +  L    K
Sbjct: 900  FEYGADSLDPAMIEGKDSV-VDFNRVLEMVKAS-----NRY--PDEIAEDPD-TLIELSK 950

Query: 831  ESCSEA-FLNSLRKFFEGQQDKLDKKIKFVEDIG------W------DDKSQILEEVTHK 877
            +   E  F   ++++F      +D  ++++E +       W       D  +I +E    
Sbjct: 951  QIVREPDFDRGVKRYF------IDMLLEYIERVAESNRESWRKLGVTKDSPKIFKEPWR- 1003

Query: 878  TSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN 937
               +T+  L  FI T  ++Y   ++E  TAIGAI AQSIGEP TQMTLKTFHFAGVASMN
Sbjct: 1004 ---LTKSHLRDFIMTSKNKYLKAKLEPATAIGAICAQSIGEPATQMTLKTFHFAGVASMN 1060

Query: 938  ITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            ITQGVPRIKEIIN +K I+TPIITA L  + +   AR VK R+EKT LG++A+ ++ +  
Sbjct: 1061 ITQGVPRIKEIINASKAIATPIITATLLDDSDPEFARRVKSRVEKTTLGEIAEYLEEIYV 1120

Query: 998  SRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDK 1057
                 ++I L ++ I+   L ++A  ++ +I    KIK     +       +        
Sbjct: 1121 PDDVFVMIRLAIDRIRLLQLEVSAQTIRYAICLDKKIKPNDVTVHSNSVITVRASKSTSN 1180

Query: 1058 SKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQA 1117
              +   +  L   LP V+VKG+    R VI   +          EK  Y+LLVE   L  
Sbjct: 1181 QNLSHIIQDLMANLPKVVVKGVAA--RAVIHCDDT-------TPEKPVYKLLVESNRLLD 1231

Query: 1118 VMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLM 1177
            V+   G+   K + N+I EV + LGIEAAR  II E+ ETM+ HG+SID RH+MLLADLM
Sbjct: 1232 VLSTYGVRPEKCRCNNILEVSEVLGIEAARHQIITEMRETMEGHGISIDMRHLMLLADLM 1291

Query: 1178 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP 1237
            T  GEV+GITR G+ KM +S LMLASFEKTADHLF+A+  G+ D + GVSECII+G PM 
Sbjct: 1292 TRTGEVVGITRHGLAKMKESALMLASFEKTADHLFDAAYYGQRDDVTGVSECIILGKPMK 1351

Query: 1238 LGTGILKI 1245
             GTG   +
Sbjct: 1352 QGTGFFNL 1359


>gi|307196534|gb|EFN78064.1| DNA-directed RNA polymerase III subunit RPC1 [Harpegnathos saltator]
          Length = 1334

 Score = 1035 bits (2677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/1273 (46%), Positives = 778/1273 (61%), Gaps = 93/1273 (7%)

Query: 3    NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTES- 61
            NP +  L +  L K I++K    A K   C  C  ING VKKA  +L I+H++ K  +  
Sbjct: 104  NPNLGYLARKALRKQILEK----AKKTTICQNCKEINGTVKKA-GMLKIVHEKYKNKKKQ 158

Query: 62   --------LQEFASAITHTKESKAAVNVA--TYILNPVNVLFLFKRMTDTDCEVLYLSER 111
                    L ++   + H KE K+ +  +   + LNP+ VL LF+R+   D  +L ++  
Sbjct: 159  ENIIEEKLLSDYRYVVEHNKEIKSILQSSGLVFTLNPILVLELFERIPVCDIPLLLMNRE 218

Query: 112  ---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               P+ LI+T I VPPI IRPSV  D  S +NE+ +T +L  II  N  +Q+ +      
Sbjct: 219  HTLPQDLILTRIPVPPICIRPSVASDLKSGTNEDPLTMKLSEIIFINNVIQKHMQSGVKV 278

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                  WE LQ+  A YINS++ G+P +MQ  +   G VQRLKGKQGRFRGNLSGKRV++
Sbjct: 279  QMYHEDWEFLQLHCALYINSEMSGIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDF 338

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY 287
            + RTVISPDPNLKI +V +P+ +A+ILTYPERV+  N++ +RQ I+NG D +PGA  + +
Sbjct: 339  SARTVISPDPNLKIEQVGVPLYIAKILTYPERVNPANMDLMRQLIRNGADVHPGANFVLH 398

Query: 288  PDGTARVLYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
               T R +Y  +  RN++  EL+ G IV+RHL D D+VLFNRQPSLH++SIM HRA+I+ 
Sbjct: 399  -QKTQRRMYLPYSNRNKVIRELQYGDIVERHLRDDDIVLFNRQPSLHKLSIMAHRAKILN 457

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VCNPYNADFDGDEMN+H+PQTEEAR EAL+LMG ++NL TP+NGE+L+A+T
Sbjct: 458  HRTFRFNECVCNPYNADFDGDEMNLHLPQTEEARAEALVLMGNKSNLVTPRNGELLIAAT 517

Query: 406  QDFLTSSFLITRKDTFYDRA-AFSLMCCYMGDG--MDRVDLPTPAILKPVELWTGKQLFS 462
            QDF+TSS+L+TRK+TF   A A  L  C M D   +  V LP PAI+KP++ WTGKQ+F 
Sbjct: 518  QDFITSSYLLTRKNTFLTEAQAVLLANCLMNDADNLVSVTLPPPAIIKPIKAWTGKQIFG 577

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            +++RP+    V  NL  K K Y+N             E MC  D +V  RNSEL++G + 
Sbjct: 578  LIMRPNEECPVKANLRTKGKAYTNG------------EEMCIEDSYVLIRNSELLAGSMD 625

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G K  ++ +LL D+G    +  M RLA+L++ +I N GFSIGI DV P   L  
Sbjct: 626  KVTLGSGTKQSIFYILLCDWGEDVATLAMWRLARLASCYITNAGFSIGISDVTPGHGLLQ 685

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L+   Y+ C   I++  EG L  +PGC   +T+E  I   L+ IR+  GK C+  L
Sbjct: 686  AKEELLKNGYDKCTNYIRQMEEGNLVCQPGCTKEETMEVKILKELSAIRDHGGKVCLKEL 745

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPLIM+  GSKGS INISQM+ CVGQQ+V G+R P+GF  RSLPH+ R  K P+AK
Sbjct: 746  APGNSPLIMAISGSKGSFINISQMITCVGQQAVSGKRVPDGFNIRSLPHYARGLKTPSAK 805

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFV NSFYSG+                              RRL+K+LEDL  QYD +VR
Sbjct: 806  GFVENSFYSGM------------------------------RRLVKSLEDLCFQYDMTVR 835

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            N+ G IVQ  YG DGMDP  ME K   PL++ R+L  VKA  P   +  L    +++   
Sbjct: 836  NSMGDIVQLKYGGDGMDPTYMEDKDW-PLDYQRVLEHVKAKSPHKEEIPLDGADITDTAF 894

Query: 823  KQLAAYGK-ESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQIL--EEVTHKTS 879
            +  A   +  S  E   + L  F E   D++              +  IL    V  +  
Sbjct: 895  QWFADSERFSSVEEELKDDLLVFLEWVGDRITHY-----------RQNILCHSPVALQPG 943

Query: 880  GITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNIT 939
              T  QLE FI TC  +Y   R+E GTA+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT
Sbjct: 944  RFTISQLEEFIHTCNEKYMRARIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNIT 1003

Query: 940  QGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSR 999
            QGVPRIKEIIN + +ISTP+ITA L  + +   A  VKGRIEKT L  V + I+ V    
Sbjct: 1004 QGVPRIKEIINASLKISTPVITAPLMNDTSFEIAMRVKGRIEKTTLKDVVEYIEEVCLFD 1063

Query: 1000 LASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK 1059
               ++I LD + I+   L ++ + +  SI  T K+ L  +++       + I P   K K
Sbjct: 1064 DHFLLIKLDTDLIKSLKLEVDVNSICYSIC-TSKLHLTAKNVLAKGDSIITIQP--SKQK 1120

Query: 1060 IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVM 1119
             + EL  LK  LP VI+KG+ +V RVVI   E       +   K KY+L VEG  L+ VM
Sbjct: 1121 SNNELTQLKENLPNVIIKGLPSVARVVIDSHE-------DTDGKMKYKLFVEGDNLREVM 1173

Query: 1120 GAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTF 1179
               GI   KT SN+  EV + LGIEAAR  I+ EI   M+ H +SID RH+ML+ADLMT 
Sbjct: 1174 ATTGILSKKTTSNNTMEVYKALGIEAARTTIMTEIESVMENHAISIDHRHLMLVADLMTS 1233

Query: 1180 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLG 1239
            RGEVLGITR G+ KM +SVL LASFEKTADHLF+A+  G+ D I GVSE IIMGIP+P+G
Sbjct: 1234 RGEVLGITRQGLAKMKESVLNLASFEKTADHLFDAAYYGQSDTICGVSESIIMGIPIPVG 1293

Query: 1240 TGILKIRQRDAVP 1252
            TG+  +  +   P
Sbjct: 1294 TGLFTLLHKYPFP 1306


>gi|307166498|gb|EFN60583.1| DNA-directed RNA polymerase III subunit RPC1 [Camponotus floridanus]
          Length = 1384

 Score = 1031 bits (2666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/1273 (45%), Positives = 796/1273 (62%), Gaps = 78/1273 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++NP    L +  L K I +K    A K   CP C   NG VKKA   L I+++R K   
Sbjct: 129  IQNPNFGYLMRKGLRKQIWEK----AKKKTICPNCKENNGPVKKA-GFLKIVYERHKNLK 183

Query: 58   -----VTESLQEFASAITHTKESKAAVN-----VATYILNPVNVLFLFKRMTDTDCEVLY 107
                 + E L E    +   KE K+ V+     V    L P  VL LF R+  +D  +L 
Sbjct: 184  KTDPLIQEKLAELGPLMEQDKELKSIVDQNHRTVFDQCLFPNMVLELFTRIPASDVCLLL 243

Query: 108  LSER---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASL-QQELV 162
            ++ +   P  LI++ I VPP+ IRPS + D  + +NE+ +T +L  I   N  + +Q  V
Sbjct: 244  MNPKCAVPADLILSRIPVPPVCIRPSTLSDIKAGTNEDYLTMKLSEISLINEVIYKQTNV 303

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
             AN   K +  W+ LQ+    YINS++ G+P  MQ  +   G VQRLKGKQGRFRGNLSG
Sbjct: 304  NAN---KYVEQWDYLQLHCGLYINSEMSGIPAHMQPKKFGRGIVQRLKGKQGRFRGNLSG 360

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++ RTV             +PI++A ILTYPE+V+  NIE +R  ++NGP+ +PGA
Sbjct: 361  KRVDFSSRTV------------GVPIQIAMILTYPEKVNSSNIELMRALVRNGPNVHPGA 408

Query: 283  RMIRYPDGTA--RVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMC 338
              ++Y + +   RV   YG  R + A +LK+G IV+RHL+D D+VLFNRQPSLH++SIM 
Sbjct: 409  NYVQYNNNSQNNRVFLQYGN-RIKAAQDLKNGDIVERHLKDNDLVLFNRQPSLHKLSIMA 467

Query: 339  HRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNG 398
            HR +++  RT RFNE  C PYNADFDGDEMN+H+PQTEEA+ EAL+L+  ++NL TP+NG
Sbjct: 468  HRTKVLKHRTFRFNECCCAPYNADFDGDEMNLHLPQTEEAKAEALVLLANKSNLVTPRNG 527

Query: 399  EILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG--DGMDRVDLPTPAILKPVELWT 456
            ++L+A+TQDF+T  +L+T+KD F+DR    L  C++   D    V LP PAILKPV+LWT
Sbjct: 528  DLLIAATQDFITGGYLLTQKDVFFDREQVKLALCFLAGADASLTVTLPIPAILKPVKLWT 587

Query: 457  GKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSEL 516
            GKQ+FS++IRP     V  NL  K KTY      T G+E       C ND +V  RNSEL
Sbjct: 588  GKQIFSLIIRPSPECPVKANLKTKGKTY------TTGEE------FCINDSYVIIRNSEL 635

Query: 517  ISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQP 576
            ++G +  +TLG+G+K  ++ +LLRD+G    +  M RL +L+  +  + G SIG+ D+  
Sbjct: 636  LAGAMDVSTLGSGSKQNIFYILLRDWGEDYATASMWRLTRLTNHFNFDRGISIGLSDLIA 695

Query: 577  KKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGK 636
             + L   +  +++ +Y  C+  IK   +G+L  +PGC   +TLE  I + L+ IR++ GK
Sbjct: 696  SQGLVQARESILNTHYSKCHEYIKLMEQGQLASQPGCSVEETLETKILNELSVIRDNVGK 755

Query: 637  ACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKA 696
            AC+  L   N+PL M+ CGSKGS IN+SQM+ CVGQQ++ G R PNGF +R+LPH   + 
Sbjct: 756  ACLKELHRTNTPLTMALCGSKGSYINVSQMIGCVGQQAINGHRVPNGFENRALPHVLAQL 815

Query: 697  KEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
            + P  KGFV NSFYSGL + EF+FH MGGREGL DTAVKTADTGYM RRLIK+LEDL + 
Sbjct: 816  RTPDVKGFVKNSFYSGLGSKEFYFHAMGGREGLTDTAVKTADTGYMQRRLIKSLEDLCVH 875

Query: 757  YDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQ 816
            YD +VRN+   I+Q  YG D +DP  MEGK   P+++ R+   V+A  P   +  L    
Sbjct: 876  YDMTVRNSMRDIIQICYGGDKLDPTYMEGKDC-PVDYKRVYDHVRAKLPYKNEEPLDAVS 934

Query: 817  VSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTH 876
            V    E  L+    +  SE F   L +F +    K+     + ++I    KS+    V  
Sbjct: 935  VMSATEDMLSTEEYDCLSEEFKKELVEFMKTVAQKI---AHYRQNI----KSK--ASVVL 985

Query: 877  KTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 936
            +   +T  QL  FI TC  +Y    +E GTA+GA+ AQSIGEPGT MTLKTFHFAGVASM
Sbjct: 986  QLERLTVSQLVEFIHTCKEKYMRAVIEPGTAVGALAAQSIGEPGTSMTLKTFHFAGVASM 1045

Query: 937  NITQGVPRIKEIINGAKRISTPIITAEL-ECNDNENAARVVKGRIEKTLLGQVAKSIKIV 995
            NITQGVPRIKEIIN + +ISTPIITA L +  D E A R VK RI+KT L ++   I+ V
Sbjct: 1046 NITQGVPRIKEIINASPKISTPIITATLVDGTDFEGAER-VKARIQKTTLKEIVDCIEQV 1104

Query: 996  MTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPV 1055
             T     + I L+ME I+   L +N + +   I+ T K+KL  ++++ +    + I P  
Sbjct: 1105 YTRGDYFLKIKLNMEKIKLLKLEVNVNSIC-YILCTSKLKLTPKNVRAIGDSVIIIQPTK 1163

Query: 1056 DKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGL 1115
             K   +F    L + LP ++VKG+ +V RVV+ ++         NG K K++L VEG   
Sbjct: 1164 QKENPNFPFRRLMDALPKIVVKGMPSVSRVVVHDE-------TSNG-KTKWKLFVEGDNF 1215

Query: 1116 QAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLAD 1175
            + VM   G+ G KT SN+  EV +TLGIEAAR  I+ EI   M+ HG+S+D+RH++LLAD
Sbjct: 1216 REVMATYGVHGEKTTSNNTLEVFKTLGIEAARTTIMAEIKSVMENHGISVDRRHLILLAD 1275

Query: 1176 LMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIP 1235
            LMT RGEVLGITR G+ KM +SVL LASFEKTADHLF+++  G+ D I GVSE IIMGIP
Sbjct: 1276 LMTCRGEVLGITRQGLDKMKESVLNLASFEKTADHLFDSAYYGQRDAICGVSESIIMGIP 1335

Query: 1236 MPLGTGILKIRQR 1248
            +P+GTG+ K+ Q+
Sbjct: 1336 IPVGTGMFKLLQK 1348


>gi|326479108|gb|EGE03118.1| DNA-directed RNA polymerase III largest subunit [Trichophyton equinum
            CBS 127.97]
          Length = 1427

 Score = 1019 bits (2636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/1293 (44%), Positives = 793/1293 (61%), Gaps = 92/1293 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDR---- 55
            +R P ++ LR+  + K I  +C     K   C  C  ING VKKA    L I+HD+    
Sbjct: 137  LRRPGLDNLRRMQINKRINVRCR----KTPVCYYCNAINGTVKKASTGALKIVHDKFRAF 192

Query: 56   -----SKVTESLQEFASAITHTKESKAAVNVATYI------LNPVNVLFLFKRMTDTDCE 104
                 +K      + A   +  +  KA  ++  +       LNP+ VL LF+R+++ DCE
Sbjct: 193  NASLSAKKIPPPSKLAFDRSFEEAKKANPDIEKHYRRVFDDLNPLRVLKLFRRISNEDCE 252

Query: 105  VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
            +L L+    RPE  +   I  PP+ IRPSV  +G+ S E+D+T +L  I+Q+N +L+  L
Sbjct: 253  LLSLNVDGARPEYFLWQFIPAPPVPIRPSVGQEGA-STEDDLTAKLGDIVQSNLNLKMAL 311

Query: 162  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
             +       +  W+ +Q+++A YINSD+ G+  +    + + G  QRLKGKQGRFRGNLS
Sbjct: 312  DKGAPVQTIIECWDYMQLQIAVYINSDIPGLQ-NTDSKKTIRGLCQRLKGKQGRFRGNLS 370

Query: 222  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
            GKRV+++GRTVISPDPNL+I EVA+P  +A  +TYPERV+ +N EKLRQCI+NG   +PG
Sbjct: 371  GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPG 430

Query: 282  ARMIRYPDGTARVL--YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            A  +     + R+   YG   N +A +L+ G IV+RHLEDGD+VLFNRQPSLH++SI+ H
Sbjct: 431  ANYLIKEGNSFRLFLKYGNL-NMIANQLREGDIVERHLEDGDIVLFNRQPSLHKLSILSH 489

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
              ++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV++NL TPKNGE
Sbjct: 490  FVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSNLATPKNGE 549

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++A+ QDF+T+++L++ KD F+DR  F+ +C  M D   R +LP PA +KP  LWTGKQ
Sbjct: 550  PIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLSMLDSSTRFELPPPATIKPQMLWTGKQ 609

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +FSVL+R + +  V VNL    +    KL++ +  +      +C NDG++  RNSE++ G
Sbjct: 610  VFSVLMRSNKDCPVKVNLDAACRQL--KLVKGQPRD------LCENDGWLCIRNSEMLCG 661

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
               K+T+G G KD ++ V+ RD+G  A +  MNRL+KLSARW+ N GFSIGI DV P + 
Sbjct: 662  VADKSTIGAGKKDNIFFVIQRDFGYAAAAEAMNRLSKLSARWLTNKGFSIGITDVYPGES 721

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L   K  LI+  ++ C+  I   ++ K Q+    D+ QT E  IT ILN++R+ AG+ C+
Sbjct: 722  LVRLKDTLINTAFQQCDDLITAASKEKPQMGKS-DSRQTAENEITGILNKVRQQAGEYCI 780

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
              L   N+PLIM+ CGSKGS IN+SQMVA VGQQS+   R   GF DR+LPHF R ++  
Sbjct: 781  SELSKHNAPLIMATCGSKGSNINVSQMVAVVGQQSIENARVSKGFQDRTLPHFARHSQHA 840

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             AKGFV NSF+SGL+ TEF FH M GREGL+DTAVKTA+TGYMSRRL+K+LEDLS +YDN
Sbjct: 841  LAKGFVRNSFFSGLTPTEFLFHAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDN 900

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VR++   I+QF YGDD +DP NME  S +P++FDR     ++T     ++ LS  ++  
Sbjct: 901  TVRDSSSFIIQFQYGDDQLDPVNMEA-SAKPVHFDRTFTHAESTTYDKDEKGLSADEILA 959

Query: 820  IVEKQLAAYGKESCSEAFL-NSLRKFFEGQQDKLDKKIKFVEDIGWDDK----SQILEEV 874
            + E+ +A   K+      L N+L   ++ + D       F  D  W+      S I E V
Sbjct: 960  LCEELIAPERKKLVRYDLLGNTLS--YKAETD-------FATD-QWESNRDFLSSIEEYV 1009

Query: 875  THKTSGI----TEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHF 930
              K + +     E+  E    T  S+   + ++       +    +  PGTQMTLKTFHF
Sbjct: 1010 AAKAAQLRPSDNEEGKEQMAFTHTSKISARTLKGLHHFEPLVHSPLENPGTQMTLKTFHF 1069

Query: 931  AGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAK 990
            AGVA M+ITQGVPRIKEIIN +K ISTPIIT EL    +   A +VKGR+EK  L  +  
Sbjct: 1070 AGVAGMSITQGVPRIKEIINASKEISTPIITCELVNKTDMRIAEIVKGRVEKLFLKDIVY 1129

Query: 991  SIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKL- 1049
             I+   +   + I I +D  TI+   L +    +  +I +    K        L FR   
Sbjct: 1130 YIEENRSQTSSFINIKVDFSTIKKLQLELTLRQILLAIKKHKAFKAAD-----LTFRSFN 1184

Query: 1050 -EIFPPVDK----------------SKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEK 1092
              I   VD+                S  +  +  L+ +LP + V G     R VI   EK
Sbjct: 1185 SHIHIYVDEGASMAGVSVSEQKITGSDPYIRINYLRRILPNIQVFGYPDCTRAVIRVGEK 1244

Query: 1093 EKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIID 1152
                +          LLVEG GL+A M  +GI+G +T++NH+ E++  LGIEAAR  IID
Sbjct: 1245 VATNI----------LLVEGYGLRACMTTDGIEGHRTRTNHVMEMRDVLGIEAARTTIID 1294

Query: 1153 EINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLF 1212
            EI+  M   GM+ID RHM LLAD+MT++GEVLGITRFG+ K+  SVL LASFEKTADHLF
Sbjct: 1295 EISSVMS--GMAIDPRHMQLLADVMTYKGEVLGITRFGLAKIRDSVLQLASFEKTADHLF 1352

Query: 1213 NASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            +A   GR D ++GVSECIIMG  + LGTG +++
Sbjct: 1353 DAGGAGRRDTVQGVSECIIMGKTISLGTGSMEV 1385


>gi|336260159|ref|XP_003344876.1| hypothetical protein SMAC_06162 [Sordaria macrospora k-hell]
 gi|380089075|emb|CCC13019.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1474

 Score = 1015 bits (2625), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/1350 (42%), Positives = 805/1350 (59%), Gaps = 170/1350 (12%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR-SKVT 59
            +R P ++ L+++ ++K I  +C     K   CP CG   G+++K ++V+ + HD+ S   
Sbjct: 135  LRAPGIDNLKRSAILKKINDECR----KQKTCPYCGDTQGVIRK-LSVMKLTHDKFSHFN 189

Query: 60   ESLQE--------------FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
            +S  +              F  A T T + +     A   ++P+ VL LFK++T  DCE+
Sbjct: 190  KSTAQKKVPPVAKAAFDSSFIQAKTFTPDLEKHSKKAMDDMDPLKVLKLFKKITAEDCEL 249

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L+    RPE  +   +  PPI IRPSV  + + SNE+DIT +L  II     L++ L+
Sbjct: 250  LGLNPSEGRPEMFLWQYLPAPPICIRPSVQQEAA-SNEDDITSKLSEIILYAGHLRESLL 308

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            +  +    +  WE +Q++V  Y+NSDV G+ +     +P+ GF QRLKGKQGRFRGNLSG
Sbjct: 309  KGAALNTIMEQWEFIQLQVGMYVNSDVPGL-YQPGFGKPIRGFCQRLKGKQGRFRGNLSG 367

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I +VA+P R+A+ LTYPERV+ +NIEKLR+C+ NGP  +PGA
Sbjct: 368  KRVDFSGRTVISPDPNLGIDQVAVPERVAKNLTYPERVNRNNIEKLRKCVMNGPKVWPGA 427

Query: 283  RMIRYPDGTAR--VLYG--KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMC 338
            + +   DG  +  + +G    R + A ELK G +V+RHLEDGD+VLFNRQPSLH++SIM 
Sbjct: 428  QGVIKRDGGMKFNLNFGDESIREERARELKFGDVVERHLEDGDIVLFNRQPSLHKLSIMS 487

Query: 339  HRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNG 398
            HRA++ PWRT R NE VC PYNADFDGDEMN+H+PQTEEAR EA+ LMG           
Sbjct: 488  HRAKVRPWRTFRLNECVCTPYNADFDGDEMNLHLPQTEEARAEAINLMG----------- 536

Query: 399  EILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGK 458
                    DF+T+++L++ KD F DR  F+ +C  M  G   +DLP P I+KPVE+WTGK
Sbjct: 537  --------DFITAAYLLSSKDLFLDRKTFTYICTQMLLGETHLDLPPPTIIKPVEMWTGK 588

Query: 459  QLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELIS 518
            Q+F+VL+RP+    V VNL  K K Y  K     G+    +  M  +D ++         
Sbjct: 589  QIFNVLMRPNKQSPVLVNLEAKNKVYKAK----PGE----LPDMDIDDCYLV-------- 632

Query: 519  GQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKK 578
                        K+ ++ V+LRD+G    +  MNRLAKL AR +   GFSIG+ DV P K
Sbjct: 633  ------------KNSVFYVILRDWGPEHAAQAMNRLAKLCARTLTLRGFSIGVGDVYPSK 680

Query: 579  ELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKAC 638
            +L++ K KL+++ Y +C+  I ++  G+L+  PGC+  +TLE  I+ IL+++R  AG  C
Sbjct: 681  DLTEHKAKLVADAYALCDDLIAQFKSGRLEKAPGCNMEETLENKISGILSKVRSQAGDYC 740

Query: 639  MGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKE 698
            +G L   NSPLIM++ GSKGS IN++QMVA VGQQ +GG+R  +GF DR+L HF + A++
Sbjct: 741  VGHLSRNNSPLIMAKSGSKGSDINVAQMVALVGQQIIGGKRVADGFQDRTLFHFHKNARQ 800

Query: 699  PAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYD 758
            P +KGFV NSFY+GL  TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD
Sbjct: 801  PPSKGFVRNSFYTGLVPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYD 860

Query: 759  NSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVS 818
            ++VR + G IVQF YG D +DPA+MEG + +P++F+R     ++      +R L P ++S
Sbjct: 861  DTVRTSEGNIVQFQYGADRLDPADMEG-NAKPVDFERSWNHAESLTMNHNERSLLPAEIS 919

Query: 819  -----------------EIVEKQLAAYGKESCSEA-----------------FLNSLRKF 844
                              +V  +L  Y  ++ +E+                 +LN+++  
Sbjct: 920  AMCREILDERRKSYVRKHLVTGELLHYADKTIAESNDHDVFIAIDEHEGARVYLNTIQAE 979

Query: 845  FEGQQDKLDKKIKFV---------------EDIGWDDKS-------------QILEEVTH 876
             + +  KL K  +                 E   W+ K              +I +    
Sbjct: 980  MDKRALKLAKARRLAGLDPCLDQNNADLLKEFAAWEKKQNGGDIKMLDPEEEEIQQAHVD 1039

Query: 877  KTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 936
            + + ++E  L  F+  C S++   +VE G A+GA+GAQSIGEPGTQMTLKTFHFAGVA M
Sbjct: 1040 RVAKVSEATLRKFMNLCLSKFDKAKVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGM 1099

Query: 937  NITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVM 996
            +ITQGVPRIKEII  +K ISTP+I+ ELE N +  AAR+VKG+IEKT +  V + ++ V 
Sbjct: 1100 SITQGVPRIKEIIGASKLISTPVISCELENNVDIKAARIVKGKIEKTFISDVIQYVEDVW 1159

Query: 997  TSRLASIVIALDMETIQDAHLCINADIVKESIVQT---------------PKIKLKQQHI 1041
               +A IV+ +DM+ + D  L I    +  +IV+                P   ++   +
Sbjct: 1160 LPDVAKIVLKIDMQALSDMQLGIGLREIMVAIVKAKKLKLKVEMDDLKIGPDNTIEAARV 1219

Query: 1042 KVLDFRKLE-IFPPVDKSKIHFELYS--LKNVLPMVIVKGIKTVERVVIAEKEKEKRKVK 1098
            +     K + +    D++   F+L    LK +LP V + G     R +I           
Sbjct: 1220 RAAAIEKGQLLLTTSDETAADFQLRVNFLKRMLPAVPISGYPEAFRAII----------- 1268

Query: 1099 ENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETM 1158
            ++ E  ++++LVEG GL+A M  EG+ G K  SN I E +  LGIEAAR  I  EI   M
Sbjct: 1269 QSSESNEHKVLVEGYGLRACMTTEGVIGTKCISNSIMECRDVLGIEAARTTIAKEIGSVM 1328

Query: 1159 KAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNG 1218
                M ID RHM LLAD+MT++GE+LGITR G+ KM  SVL LASFE+T DHLF+A+   
Sbjct: 1329 G--DMGIDPRHMDLLADVMTYKGEILGITRHGLAKMRDSVLQLASFERTPDHLFDAAAGM 1386

Query: 1219 RDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            + DRI GVSECIIMG  M +GTG  ++ +R
Sbjct: 1387 KTDRILGVSECIIMGQTMKIGTGAFQVVRR 1416


>gi|294917153|ref|XP_002778409.1| DNA-directed RNA polymerase III largest subunit, putative [Perkinsus
            marinus ATCC 50983]
 gi|239886802|gb|EER10204.1| DNA-directed RNA polymerase III largest subunit, putative [Perkinsus
            marinus ATCC 50983]
          Length = 1719

 Score = 1011 bits (2614), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/1212 (45%), Positives = 765/1212 (63%), Gaps = 60/1212 (4%)

Query: 3    NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-AVLGIIH----DRSK 57
            N   +A +     K + +K      K  +CP C   NG VKK     + ++H    D++K
Sbjct: 104  NRTRKATKDVQQQKGVFRKLVDTCKKVRQCPYCDAYNGAVKKGTRGYMTLVHELPKDQAK 163

Query: 58   VTESLQEFASAITHTKE-SKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLI 116
            V E  Q+++ A+ +  E       VA   L P+++L L  +M  +D E+L L  +PE+L+
Sbjct: 164  V-EYQQQYSDAVNNNPEIGNHLSKVAYEDLTPLHLLPLLAKMPPSDQEMLKLPPQPERLV 222

Query: 117  ITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWET 176
            +T++ V P+ IRPSV +  + + E+D++ +   I+ TN +++  L    +  +    W+ 
Sbjct: 223  VTHVPVSPVCIRPSVQIGDAGTQEDDLSVQTSDIVATNNNIKATLSRGGTLKQVAEQWQW 282

Query: 177  LQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPD 236
            L  +VA  +NS+  G+  +    +P+     RLKGK+GRFRGNLSGKRV ++GRTVISPD
Sbjct: 283  LSAQVALMMNSEATGLAAAAPTTKPIRSICSRLKGKEGRFRGNLSGKRVNFSGRTVISPD 342

Query: 237  PNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY 296
            PNL++TEV IP   A  LT+PE V   NI+ LR  +  G + +PGA +IR   G  + L 
Sbjct: 343  PNLEVTEVIIPQYSAMKLTFPEVVCRTNIDMLRDRVIRGTEGHPGAHIIRLKSGGVKNLA 402

Query: 297  ---GKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNE 353
                + R +LA +L+ G +V+RHL+DGDVVLFNRQPSLH+MSIM HRA++MPWRT RFNE
Sbjct: 403  FIKKQIREELAADLQYGDVVERHLQDGDVVLFNRQPSLHKMSIMAHRAKVMPWRTFRFNE 462

Query: 354  SVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSF 413
             VC+PYNADFDGDEMN+H+PQT+EAR EAL LMGVQNNL T KNGE +VA+TQDFLTS++
Sbjct: 463  CVCSPYNADFDGDEMNVHLPQTQEARAEALALMGVQNNLITSKNGEPIVAATQDFLTSAW 522

Query: 414  LITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRV 473
            L+T++DTF  +   + +  Y G   + ++LP P I+KP++LWTGKQL S+++RP     V
Sbjct: 523  LLTQRDTFLTKDKIANIAMYFGKAAETLELPPPTIMKPIQLWTGKQLISLMLRPSHKSTV 582

Query: 474  YVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDG 533
             VNL + EK YS+      GD        C NDG+V F NSELI+G LGK  LG G+K G
Sbjct: 583  LVNLEMAEKNYSH------GDP-----YFCRNDGYVIFYNSELIAGNLGKKILG-GSKPG 630

Query: 534  LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYE 593
            L  VL+RD      + C+ RL+KLSARW+G  G S GIDDV    E+   K + ++E Y 
Sbjct: 631  LTFVLIRDNSPAVAAACLGRLSKLSARWLGTRGMSFGIDDVTASPEIEAFKKEQVAEKYA 690

Query: 594  VCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQ 653
              + KI+EY +GKL LKPGC+A QTLEAVI   L +IR   G      LP  N P IM+Q
Sbjct: 691  YVDEKIEEYRKGKLPLKPGCNAEQTLEAVINGELGKIRNVVGDRLEKVLPRFNKPRIMAQ 750

Query: 654  CGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGL 713
            CGSKGSPIN+SQM+ C+GQQ+VGG+R  NGF++R+LPHF + +K P ++GFV +SF+SGL
Sbjct: 751  CGSKGSPINLSQMIVCLGQQNVGGQRIQNGFVNRTLPHFKKFSKTPQSRGFVEDSFFSGL 810

Query: 714  SATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLY 773
            +  E+FFHTMGGREGLVDTAVKTA+TGYM R+LIKALEDL ++YD +VR + G +VQF++
Sbjct: 811  NPFEYFFHTMGGREGLVDTAVKTAETGYMQRKLIKALEDLGLKYDMTVRTSDGTVVQFVF 870

Query: 774  GDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLS--PQQVSEIVE---KQLAAY 828
            GDDG++PA MEGKS +PLNF+  +  V+        R ++  P +   +     +Q+   
Sbjct: 871  GDDGLNPAMMEGKS-KPLNFEHTMNHVQHVVEKHHTREVALLPSEYRALTNELIQQVDQE 929

Query: 829  GKESC------SEAFLNSLRKFFEGQQDKLDK-KIKF---VEDIGWDDKSQILEEVTHKT 878
             K  C      +  F   L +F  G   +++K ++K    V+D   DD  +    +   +
Sbjct: 930  VKSICPLTSLDTSRFTGDLTEFIGGMASEMEKERVKVGLPVDDRVRDDPRE--STLCDLS 987

Query: 879  SGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNI 938
              +TE QL  F+ TC  +YR   +E G A+GA  AQSIGEP TQMTLKTFHFAGVASMN+
Sbjct: 988  CALTEAQLRSFMTTCARKYRRALMEPGEAVGATSAQSIGEPATQMTLKTFHFAGVASMNV 1047

Query: 939  TQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            T GVPRIKEIIN AK ISTPII+ +LE +  E AA +VK +I++TLLG + + IK V   
Sbjct: 1048 TLGVPRIKEIINAAKHISTPIISCKLEQDRVEAAAFMVKSKIQRTLLGDICEYIKQVYEP 1107

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPK----IKLKQQHIKVLDFRKLEIFP- 1053
                +++ L  ET++   L +  D +KE++         +K++ + I+     KL I P 
Sbjct: 1108 SGVYLIVKLCGETLRRMQLDLTMDELKEALCAKGALPGGLKIRPECIESRGKLKLAIRPA 1167

Query: 1054 ----------PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEK 1103
                      P +   + FE+ +L+N LP   VKG+K   RVV+ ++E      K+  + 
Sbjct: 1168 GAVDSRGRTLPPNPETLWFEVQALRNALPQAPVKGLKQCSRVVVNKEE-----AKDGSKD 1222

Query: 1104 KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGM 1163
              Y LLVEG GLQ VMG EG+   K+ SNH+ EVQ  LGIEAAR  I+ EI+  MK  GM
Sbjct: 1223 TIYSLLVEGYGLQDVMGIEGVVAEKSVSNHVLEVQSVLGIEAARKSIMSEIDVIMKHFGM 1282

Query: 1164 SIDKRHMMLLAD 1175
            S+D RH+ +L D
Sbjct: 1283 SVDYRHIQMLGD 1294


>gi|154417868|ref|XP_001581953.1| RNA polymerase Rpb1, domain 2 family protein [Trichomonas vaginalis
            G3]
 gi|121916185|gb|EAY20967.1| RNA polymerase Rpb1, domain 2 family protein [Trichomonas vaginalis
            G3]
          Length = 1657

 Score =  997 bits (2577), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/1265 (43%), Positives = 776/1265 (61%), Gaps = 53/1265 (4%)

Query: 4    PKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQ 63
            P      K D +K+++K+C     K   CP CG ING VKK    L I H+  +  + L+
Sbjct: 110  PPQTVSAKIDRVKALMKECE----KVTICPHCGAINGPVKKTKTTLIITHNVGQKNDKLR 165

Query: 64   E-----FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL---YLSERPEKL 115
            E     F+       + K  ++     + P+  L LFK +      +L   +    P  +
Sbjct: 166  EPFLSKFSKLDIKGDDYKKYLDNICDDITPLRALQLFKAIPTRQIPLLLSGFSVSSPADM 225

Query: 116  IITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWE 175
            IIT+I +PP  IRP+VI  G  +N++D+T RL   +  N  +++ +     A  ++  W 
Sbjct: 226  IITSIVIPPNCIRPAVIAAGEGTNQDDLTVRLVDSVHFNDEIRKSIEVGRQASSTMELWS 285

Query: 176  TLQVEVAQYINSDVRGVPFSMQVAR-PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVIS 234
            +LQ  V   INS+        +    P+ G +QRLKGKQGRFR NLSGKRV Y+GRTVIS
Sbjct: 286  SLQQNVNSSINSEAADTAAKTKKKNKPVIGVIQRLKGKQGRFRTNLSGKRVNYSGRTVIS 345

Query: 235  PDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARV 294
            PDPN+ + +V IP+ MA+ILT+P RV+  N + L + ++NGPDKYPGA  I   D   ++
Sbjct: 346  PDPNVNVDQVVIPVSMAKILTFPTRVTKFNKKDLMRYVKNGPDKYPGANNIIKADTGFKL 405

Query: 295  --LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 352
               YG  + Q A EL+ G IV+RHL D D VLFNRQPSLHR+SIM  RA++M W T+RFN
Sbjct: 406  SLAYGN-KEQRAQELREGDIVERHLLDNDTVLFNRQPSLHRISIMGFRAKVMEWCTMRFN 464

Query: 353  ESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSS 412
            ESVC P+NADFDGDEMN+H+PQT EA  +A  LM V  NL +P+ GE++VA TQDFL+ +
Sbjct: 465  ESVCAPFNADFDGDEMNVHLPQTLEAAADARYLMNVLYNLFSPRAGEMIVAPTQDFLSGA 524

Query: 413  FLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMR 472
            F++TRK+ F D + F+ +   + D ++ VD+P PAI+KP +LWTGKQ+ S++I P+    
Sbjct: 525  FILTRKNVFLDYSHFTFLISQIFDNLEEVDIPPPAIVKPYQLWTGKQVVSLMIAPNKKTD 584

Query: 473  VYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKD 532
            ++    V  K Y+       G++E     MC  DG+V F ++ ++SG L K+ +G G K 
Sbjct: 585  LHFTHQVGNKEYT-------GNKE-----MCKKDGYVSFLDNYMVSGVLEKSLIGGGPK- 631

Query: 533  GLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENY 592
             L++++ RD+     + CM R+AK+S R++ N GFSIGI DV+P + L++ K   IS+ Y
Sbjct: 632  SLWAIMARDHSPKFAAVCMQRIAKMSCRYLMNRGFSIGIMDVRPDENLTNNKNAQISKTY 691

Query: 593  EVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMS 652
            + C  KI EY+ GKL+  PG     TLEA +   L+ +R   GK CM  L   N+PL+M+
Sbjct: 692  QDCYDKIAEYDSGKLEAAPGMTKLATLEAFLNGQLSELRNKIGKMCMAELSPINTPLVMA 751

Query: 653  QCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSG 712
            + G+KGS INI QM+AC+GQQSVGG+R  + FIDRS+PHF   +K+P +KGF+A+SFY+G
Sbjct: 752  KSGAKGSDINICQMMACLGQQSVGGKRIIDDFIDRSIPHFKHGSKDPISKGFIASSFYTG 811

Query: 713  LSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFL 772
            L+ ++FFFHTMGGREGLVD AVKTA TGYM RRL+K+LEDL I YD +VR + G IVQF 
Sbjct: 812  LTPSDFFFHTMGGREGLVDAAVKTAQTGYMQRRLMKSLEDLVIAYDQTVRMSDGTIVQFT 871

Query: 773  YGDDGMDPANMEGKSGEPLNFDRLLMK--VKATCPPAGQRYLSPQQVSEI---VEKQLAA 827
            YGDDG+DP N+E  +  P++ +R+  +   K +  P   +  + +++  +   + ++   
Sbjct: 872  YGDDGLDPLNLE-TTYFPVDLNRVSQEYLFKFSQEPLMDQIEARERIETLFNDIREEQQG 930

Query: 828  YGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLE 887
             G     E  ++ L+K+ +   D L+K IK  +    +D S  ++     T   T+  LE
Sbjct: 931  RGLVRVPEFLIDRLKKYID---DLLEKYIKANDQYIGEDLS--MDSYIRATIPFTKSFLE 985

Query: 888  VFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKE 947
             F++ C  R      E G  +GA+  QSIGEP TQMTL++FHFAGVASMN+T GVPRI+E
Sbjct: 986  EFVKFCMHRCEKSMAEPGMTVGAVAGQSIGEPATQMTLRSFHFAGVASMNVTLGVPRIEE 1045

Query: 948  IINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIAL 1007
            ++N    I TPIITA L    +E AAR+VKG I++  LGQV K I+     +   I I L
Sbjct: 1046 VMNAVSEIKTPIITANLLSQRDEIAARIVKGIIDRVTLGQVCKHIEYNQNEKSCYIDIEL 1105

Query: 1008 DMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIF-PPVDKSKIHFELYS 1066
            D E I++A L I ++ V+ SIV TPKI +K ++        + +F    +     F +  
Sbjct: 1106 DAEIIREAKLNITSETVRRSIVNTPKIGVKDENTANNGDYNVRVFMQGANPKAFSFIMQQ 1165

Query: 1067 LKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDG 1126
            L   LP V+V G+  VERV +          KENG    ++L VEG     V+   GID 
Sbjct: 1166 LMLKLPDVVVSGVPGVERVHVG---------KENG---CFKLFVEGNPFLKVLNTPGIDP 1213

Query: 1127 CKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGI 1186
             +T SNH+ +V++ LG+EAAR  II EI   MK + ++ID+RH+MLL+DLMT RG+VLG+
Sbjct: 1214 KRTVSNHVLDVEKVLGVEAARSVIISEITNVMKNYSLNIDRRHLMLLSDLMTIRGKVLGV 1273

Query: 1187 TRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIR 1246
            TR G+ K   S L LASFE T +HLFNA+ +  D+   GVS  +I+G   P+G+G++ + 
Sbjct: 1274 TRHGLAKTSVSSLKLASFETTQEHLFNAAFHNVDEVANGVSASVILGNFAPIGSGMIDVL 1333

Query: 1247 QRDAV 1251
              D +
Sbjct: 1334 VSDEL 1338


>gi|255722720|ref|XP_002546294.1| DNA-directed RNA polymerase III largest subunit [Candida tropicalis
            MYA-3404]
 gi|240130811|gb|EER30373.1| DNA-directed RNA polymerase III largest subunit [Candida tropicalis
            MYA-3404]
          Length = 1159

 Score =  987 bits (2552), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/1050 (48%), Positives = 700/1050 (66%), Gaps = 53/1050 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHDR 55
            +R P ++ LR+  ++K ++++C     K  +C +C ++NG+VKKA      A L I+HD 
Sbjct: 127  LRRPNIDNLRRMKILKQVIEQCK----KQRRCLKCNHVNGVVKKAASGAGPAALKIVHDT 182

Query: 56   SKV---------TESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
             +               +         E    V      LNP+  L LFK++T +DCE+ 
Sbjct: 183  FRWIGKKDTPEKNAWDDDLEKVFQRNPELSKFVKRIHDDLNPLKTLNLFKQITPSDCELF 242

Query: 107  YLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
             L      RPE  I   +  PP+ IRPSV+MD +QSNE+D+T +L  I+ T++ ++  ++
Sbjct: 243  GLDPAKGGRPEMYIWRYLPAPPVCIRPSVMMD-AQSNEDDLTVKLTEIVWTSSMIKAGIL 301

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM-----QVARPLSGFVQRLKGKQGRFR 217
            +  S    +  W+ +Q+ VA YINSD      S      + ++P+  F QRLKGKQGRFR
Sbjct: 302  KGISINNLMEQWDYMQLSVAMYINSDSANPALSAGGGGAKASKPIRAFCQRLKGKQGRFR 361

Query: 218  GNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPD 277
            GNLSGKRV+++GRTVISPDPNLKI EVA+P R+A++LTYPE+ + +N +KL++ + NGPD
Sbjct: 362  GNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQRLVYNGPD 421

Query: 278  KYPGARMIRYPD--GTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMS 335
             YPGA  +   +  G   + +G  R +LA  L+ G +V+RH+EDGDVVLFNRQPSLHR+S
Sbjct: 422  TYPGANYVAKQNEPGKRNLRFGD-RAKLAKNLQIGDVVERHIEDGDVVLFNRQPSLHRLS 480

Query: 336  IMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTP 395
            I+ H A++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TP
Sbjct: 481  ILSHYAKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTP 540

Query: 396  KNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELW 455
            K+GE ++A+TQDF+T S+LI+ KD+F+DRA+ S +   M D   + D+P PAI KPV LW
Sbjct: 541  KSGEPIIAATQDFITGSYLISHKDSFFDRASLSQLLSMMSDANIQFDIPPPAIFKPVMLW 600

Query: 456  TGKQLFSVLIRPHANMRVYVNLTVKEKTYS--NKLIRTEGDEEIRIETMCPNDGFVYFRN 513
            TGKQ+FS+LI+P+   +V +NL  K KT+    K +  E         M PNDGFV  R 
Sbjct: 601  TGKQVFSLLIKPNKQSKVVINLDAKNKTFHPPAKGLPNE---------MSPNDGFVVIRG 651

Query: 514  SELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDD 573
            S+++SG + K+TLG+G K  ++  +LRDYG    +  MNR+AK+ AR++GN GFSIGI+D
Sbjct: 652  SQILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAANAMNRMAKMCARYLGNRGFSIGIND 711

Query: 574  VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRED 633
            V P  EL  KK  ++ + Y  C+  I  YN GKL+ +PGC+  QTLEA I  +L+++RE+
Sbjct: 712  VTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREE 771

Query: 634  AGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFP 693
             G+ C+  L   N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF 
Sbjct: 772  VGEVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFT 831

Query: 694  RKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDL 753
            + +K P +KGFV NSF+SGL+  EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDL
Sbjct: 832  KNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDL 891

Query: 754  SIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLS 813
            S QYDN+VRN+   IVQF YG DG+DP +MEG +  P+NF+R              + L 
Sbjct: 892  STQYDNTVRNSSNGIVQFTYGGDGLDPYDMEGDA-RPVNFNRQWDHSFNLTYNVDDKGLL 950

Query: 814  PQQVSEIVEKQLAAYGKESCSEA-FLNSLRKFFEGQQDKL-----DKKIK-FVE--DIGW 864
            P Q+SE+V+ +L+     + +E  F  S+++F   + D+L     D+ +K FV   D+  
Sbjct: 951  PYQISELVDSKLSPLETGNNAETEFYKSIKEFIAKKSDRLGRLREDRGLKAFVTAGDMEV 1010

Query: 865  DDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMT 924
            D+   ++  V ++   I++K +E F++ C  +Y   +VE GTA+GAIGAQSIGEPGTQMT
Sbjct: 1011 DEDPAVVNSV-NQILKISQKTIEKFLEQCLYKYSRAKVEPGTAVGAIGAQSIGEPGTQMT 1069

Query: 925  LKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTL 984
            LKTFHFAGVASMN+T GVPRIKEIIN +K ISTPII + L  +++E AARV KGRIEKTL
Sbjct: 1070 LKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINSVLVNDEDEIAARVAKGRIEKTL 1129

Query: 985  LGQVAKSIKIVMTSRLASIVIALDMETIQD 1014
            L  VA  I+ V    L  + I +D+ETI +
Sbjct: 1130 LEDVAFYIEDVYKDNLCYLSIKIDLETIDE 1159


>gi|432115682|gb|ELK36917.1| DNA-directed RNA polymerase III subunit RPC1 [Myotis davidii]
          Length = 951

 Score =  982 bits (2538), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/957 (53%), Positives = 668/957 (69%), Gaps = 31/957 (3%)

Query: 303  LAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNAD 362
            +A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P RT RFNE VC PYNAD
Sbjct: 1    MAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNAD 60

Query: 363  FDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY 422
            FDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ QDFLT ++L+T KDTF+
Sbjct: 61   FDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFF 120

Query: 423  DRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTV 479
            DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FSV++RP  +  V  NL  
Sbjct: 121  DRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRT 180

Query: 480  KEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLL 539
            K K Y  K            E +C ND +V  +NSEL+SG + K TLG+G+K+ ++ +LL
Sbjct: 181  KGKQYCGKG-----------EDLCINDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILL 229

Query: 540  RDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKI 599
            RD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L   K +L++  Y+ C+  I
Sbjct: 230  RDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYI 289

Query: 600  KEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGS 659
            +  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L   NSPL M+ CGSKGS
Sbjct: 290  EALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGS 349

Query: 660  PINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFF 719
             INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAKGFVANSFYSGL+ TEFF
Sbjct: 350  FINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFF 409

Query: 720  FHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
            FHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR++ G I+QF+YG DG+D
Sbjct: 410  FHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD 469

Query: 780  PANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLN 839
            PA MEGK  EPL F R+L  +KA  P   +  LS  ++    E  +  +    C ++FL 
Sbjct: 470  PAAMEGKD-EPLEFKRVLDNIKAVFPCQSEPALSKNELVLSTESIMKKHEFLCCQDSFLQ 528

Query: 840  SLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRV 899
             ++ F +G  +K+ K     +  G +D       V ++   IT  Q+E F++TC  +Y  
Sbjct: 529  EIKNFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMR 585

Query: 900  KRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPI 959
             ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GVPRIKEIIN +K ISTPI
Sbjct: 586  AQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPI 645

Query: 960  ITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCI 1019
            ITA+L+ +++ + AR+VKGRIEKTLLG++++ I+ V       I++ L +E I+   L +
Sbjct: 646  ITAQLDKDEDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEV 705

Query: 1020 NADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIHFELYSLKNVLPMVIVKG 1078
            NA+ V+ SI  + K+++K   + V     + + P  + KS +++ L  LK  LP V+V+G
Sbjct: 706  NAETVRYSICMS-KLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQG 764

Query: 1079 IKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQ 1138
            I  V R VI         + E   K+KY+LLVEG  L+AVM   G+ G +T SN+ +EV+
Sbjct: 765  IPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVE 816

Query: 1139 QTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSV 1198
            +TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++GEVLGITRFG+ KM +SV
Sbjct: 817  KTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESV 876

Query: 1199 LMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQ---RDAVP 1252
            LMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG+ K+     RD  P
Sbjct: 877  LMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANRDPSP 933


>gi|340503712|gb|EGR30247.1| hypothetical protein IMG5_137010 [Ichthyophthirius multifiliis]
          Length = 1464

 Score =  978 bits (2528), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/1321 (42%), Positives = 784/1321 (59%), Gaps = 117/1321 (8%)

Query: 20   KKCSTMASKAVKCPRCGYINGMVKKAVAVLGII--HDRSKVTESLQEFASAITHTKES-- 75
            K+C   A+   +C  C Y NG +KK   +   I   + +K+    +E   +    +E+  
Sbjct: 136  KECKKGANS--RCRICDYKNGNLKKMPKMPTTISFQNHTKMESDFREIKKSENLQQENLR 193

Query: 76   ----KAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE-RPEKLIITNIAVPPIAIRPS 130
                +  +     + NP+    LFK++  +D  +  + +  P  LI+T+I VPP  IRP+
Sbjct: 194  KILDQKQLKDMIQLYNPLQTFNLFKKIAQSDVILFNIDQNHPIDLILTHIIVPPSCIRPT 253

Query: 131  VIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVR 190
            +    S    +D+T +++  ++ N  + Q + +     K    W  LQ   A Y+N++  
Sbjct: 254  IKEGESNVRHDDLTVKIRDFLERNKRIAQMINDGEDPSKINQEWFLLQCSHAHYLNAETP 313

Query: 191  GVPFSMQV---ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIP 247
             +PF M      + +    QRLKGK+GRFRGNLSGKR  +TGRTVISPDPN+ I  V IP
Sbjct: 314  NLPFKMDKDFGKKDIRALAQRLKGKKGRFRGNLSGKRSNFTGRTVISPDPNIPIDNVVIP 373

Query: 248  IRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARV-LYGKFRNQLAVE 306
              MA+ILT+PE V+ +NI+KL++ + NGPDKYPGA  I   D   +  L    R + A E
Sbjct: 374  EYMAKILTFPETVASYNIDKLKKLVINGPDKYPGAHYIISKDTQDKFNLSIDNRRKKADE 433

Query: 307  LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 366
            LK G +V+RH+++G++VLFNRQPSLHR+SIM  +A I  W TLRFNE  C P+NADFDGD
Sbjct: 434  LKIGDVVERHIQNGEIVLFNRQPSLHRISIMAFKANIQKWNTLRFNECCCAPFNADFDGD 493

Query: 367  EMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 426
            EMN+HVPQT EAR EA  L+ V+ NL +PKNGE ++A  QDFLT+S+LIT KD F+DRAA
Sbjct: 494  EMNIHVPQTIEARAEAQYLLDVKQNLISPKNGETIIALVQDFLTASYLITHKDMFFDRAA 553

Query: 427  FSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSN 486
            FS +C Y  DG +++ LP PA++ PVE+WTGKQ    ++ P+   ++ VNLT+KEK Y+ 
Sbjct: 554  FSQLCTYFSDGNEQIQLPPPAVILPVEMWTGKQAIDAMLIPNRKNKIIVNLTLKEKCYN- 612

Query: 487  KLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHA 546
                T+ D EI    MCP DG+V F+NSEL+ G LGK TLG+GNK+GL+  L RD     
Sbjct: 613  ----TKKDREI----MCPKDGYVVFQNSELLCGNLGKTTLGSGNKNGLFYRLSRDNSQQI 664

Query: 547  TSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYN--- 603
             +  M R AKLSARW+ N+G +IGI DV P  +L+++  K   E  + C  + K++    
Sbjct: 665  AAAVMTRFAKLSARWLSNYGMTIGISDVTPSPQLNEQNEKQKDEAIQKCTYESKKFEREI 724

Query: 604  --EGKLQLKP-----GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
              + KL           D  + +EA I+  LN++RED G  C   LP  N PLIM+ CGS
Sbjct: 725  NAQQKLHTTSNTSEIAADKKKQVEAFISKTLNQVREDIGSNCNKELPPTNGPLIMATCGS 784

Query: 657  KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKA--KEPAAKGFVANSFYSGLS 714
            KGS  N+SQM+ CVGQQ +GG+R PNGF  R+LPHF +      P A GFV NSF++GLS
Sbjct: 785  KGSATNLSQMIGCVGQQIIGGKRVPNGFTGRTLPHFAKDEIFPHPEAMGFVRNSFFTGLS 844

Query: 715  ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC-IVQFLY 773
            A EFFFHTM GRE LVDTAVKTADTGYMSRRL+K LEDLSI YD +VR      ++QF Y
Sbjct: 845  APEFFFHTMAGRESLVDTAVKTADTGYMSRRLVKMLEDLSINYDLTVRTCDKKELIQFRY 904

Query: 774  GDDGMDPANMEGKSGE---PLNFDRLLMKVKATCPPA-GQRYLSPQQVSEIVEKQLAAYG 829
            G DG+ P   E K  +   P++   +   VK+  P   GQ+ L P Q+ +I  KQL    
Sbjct: 905  GGDGICPWMSEEKVSDKSVPVDLYTVFKNVKSIIPNRDGQKSLLPFQIMKITLKQLQNVK 964

Query: 830  KESCSEAFLNSLRKF-------FEGQQDKLDKKIKFVEDIGWDDKSQIL----------- 871
             +   E  +N   +           Q D +  + K + D   +D S I+           
Sbjct: 965  MDYIPELKINKNNQLQINEINNHHYQSDNIHIQ-KLLSDTYKEDSSSIVKEPLEYFKDSV 1023

Query: 872  ------------------------EEVTHKTSG--------ITEKQLEVFIQTCFSRYRV 899
                                    +E+T+  S         ITE+QL  F +  + RY  
Sbjct: 1024 FNFIRQICLKIIKVRQQIGLTRGDDELTNNESSIHVDNSIHITEQQLMFFFKLIWERYPQ 1083

Query: 900  KRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPI 959
              VE G A+GAIGA SI EP TQMTLK+FHFAG+ASMNITQGVPR+KEII+ AK ISTP+
Sbjct: 1084 MLVEPGEAVGAIGATSISEPATQMTLKSFHFAGIASMNITQGVPRMKEIIDAAKNISTPV 1143

Query: 960  ITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAH- 1016
            I  +L  E   +E   R ++ +IEKT LG++ +  K   + +   + I L+ + ++    
Sbjct: 1144 IDVKLLPEYQTDEYNFRSIRLQIEKTYLGEICEFYKEAYSPKDCHLHIQLNQQQLEKYRT 1203

Query: 1017 --LCINADIVKESIVQTPK-IKLKQQHIKVLDFRK--------LEIFPPVD-KSKIHFEL 1064
              L I  + + + I++T K IK++Q    +++ ++        L+I+P  D K  + F++
Sbjct: 1204 LGLQIPTENIIKGILETAKDIKMEQ----IVEVKEQGSHFSTALKIYPTNDLKKNVFFKI 1259

Query: 1065 YSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGI 1124
             + K +LP  +V G+K V+RV I+   K+K+K   N +  K+ L VEG  L+ ++  E +
Sbjct: 1260 QNWKKILPTAVVSGMKNVKRVNIS---KDKKK---NEQHYKFDLFVEGNALKQILMLEKV 1313

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
            D   T +  I+EV + LGIEAAR  II+EI +T+K+H +++D RH++L+AD++T +G + 
Sbjct: 1314 DFSSTSTVDIYEVFEVLGIEAARKTIINEITKTIKSHSLNVDTRHLVLVADVLTSKGRLY 1373

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
            G TR GI  M  S LMLASFEKT + L+NA++ GR D +EGVSE II+G  +P+GTG   
Sbjct: 1374 GSTRQGINFMKDSTLMLASFEKTTEILYNAALQGRKDLLEGVSERIIIGQNIPMGTGTFN 1433

Query: 1245 I 1245
            +
Sbjct: 1434 V 1434


>gi|397622848|gb|EJK66806.1| hypothetical protein THAOC_12234 [Thalassiosira oceanica]
          Length = 1020

 Score =  964 bits (2492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1029 (48%), Positives = 684/1029 (66%), Gaps = 56/1029 (5%)

Query: 258  ERVSDHNIEKLRQCIQNGPDKYPGARMIRYP--DGTARVLYGKFRNQLAVELKSGCIVDR 315
            E+VS +NIEKLR  ++NGPD +PGA ++R    +  ++ L    R   A  L+ G IV+R
Sbjct: 18   EQVSRYNIEKLRDRVRNGPDTWPGANIVRITGENSFSKSLAFGDRELAAANLRVGDIVER 77

Query: 316  HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
            H+EDGD+VLFNRQPSLH++SIM H+ +++ WRT RFN  VC PYNADFDGDEMNMH+PQT
Sbjct: 78   HMEDGDIVLFNRQPSLHKLSIMSHQVKVLQWRTFRFNICVCAPYNADFDGDEMNMHLPQT 137

Query: 376  EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
            EEAR EA +LMGV +NL TP+NGE LVA +QDFL++++LIT++D F+D+  F  +C Y G
Sbjct: 138  EEARGEASMLMGVHHNLATPRNGEPLVACSQDFLSAAYLITQRDQFFDKGMFCTLCAYFG 197

Query: 436  DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
               +++D+P PAI+KPV LWTGKQ+F+ ++RP+     +VN  +KE+ Y++         
Sbjct: 198  LADEQIDVPIPAIIKPVALWTGKQVFTAIVRPNRQCDQFVNFEMKERNYNSSK------- 250

Query: 496  EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
              +++  CPNDG+V FRNSEL+SG + K T+G+G+K GL  VLLRD G    +  M+R +
Sbjct: 251  --KMKHFCPNDGWVAFRNSELVSGNIAKKTIGDGSKTGLLYVLLRDCGPEEAARFMDRFS 308

Query: 556  KLSARWIGNH-GFSIGIDDVQPKKELSDKKGKLISENYEVCNV---KIKEYNEGKLQLKP 611
            KL +R+ G H GFSIGI DV P  +L   K  ++S  Y+  +V    IK+Y+EG L+L+P
Sbjct: 309  KLCSRYFGMHRGFSIGISDVSPSAKLKKMKHDILSTGYQKVSVAEQAIKQYDEGTLELRP 368

Query: 612  GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
            GCD  Q+LE V+  IL ++RE AG+  M +LPW N+P IM++CGSKGSP+NISQM+ACVG
Sbjct: 369  GCDLLQSLEEVLNGILGKLRESAGQEAMKALPWANTPRIMAECGSKGSPLNISQMMACVG 428

Query: 672  QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
            QQ+VGG+R  +GF++R+LPHF   +    AKGFVANSF+SGL+ATEF    M GR     
Sbjct: 429  QQAVGGQRIQDGFVNRTLPHFAYHSLTAPAKGFVANSFFSGLTATEF----MAGRPRRY- 483

Query: 732  TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL 791
               +    G       +ALEDLS++YDNSVRN+   +VQF YGDD +DP  ME     P+
Sbjct: 484  -GRENRRDGLHGSSSYEALEDLSLRYDNSVRNSENTVVQFTYGDDSLDPEKMENND-RPV 541

Query: 792  NFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESC---SEAFLNSLRKFFEGQ 848
             FDRL + +  T P   +  L   ++++ V++ L     +      ++FL  +  FF+  
Sbjct: 542  QFDRLHLHITQTNPCPDESNLLEDELTDKVKRCLEEDRFQKLLPNGKSFLAEITSFFD-- 599

Query: 849  QDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAI 908
                D   K  E IG  D +  +E+    +   TE Q+  F++   ++Y    VE G A+
Sbjct: 600  ----DIAKKQTETIGTCDDAVHIEQRIWNSCRFTETQVNEFLRQSLTKYTKALVEPGEAV 655

Query: 909  GAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECND 968
            GA GAQSI EPGTQMTLKTFHFAGV+SMN+T GVPR+KEIING+K ISTPIITA+L  ++
Sbjct: 656  GATGAQSISEPGTQMTLKTFHFAGVSSMNVTLGVPRLKEIINGSKNISTPIITAKLVQDN 715

Query: 969  NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESI 1028
            N+  AR+VK  IEKT LG+++  IK V +S    + I LDM+ I+   L I+A  V+  I
Sbjct: 716  NKVGARIVKAGIEKTTLGEISICIKEVYSSSDCYLSIQLDMKAIEQLRLNIDAVSVRRCI 775

Query: 1029 VQTPKIK--------LKQQHIKVL--DFRKLEIFPPVDKSK--IHFELYSLKNVLPMVIV 1076
            ++  + +        L ++H+ V      KL ++ P DKS    +F + +LK  LP VIV
Sbjct: 776  LKGTRGQTRPAVLRGLLEKHVLVKKGSKSKLRVYVPTDKSDSPTYFTMQALKVALPGVIV 835

Query: 1077 KGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFE 1136
            +GI +V R VI E+ K        G K  Y LLVEG GL  VMG+ G+DG  T +NHI E
Sbjct: 836  QGISSVNRAVINEESK--------GGKPSYHLLVEGCGLAEVMGSPGVDGKFTTTNHIME 887

Query: 1137 VQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDK 1196
            V+QTLG+EAAR  I  EI+  M A+G+ ID RH+MLL+D+MTF+GEVLGITRFG+ KM +
Sbjct: 888  VEQTLGVEAARTSISSEISYIMTAYGIGIDSRHLMLLSDVMTFKGEVLGITRFGVAKMRE 947

Query: 1197 SVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAVPPMLK 1256
            SVLMLASFEKT DHLF+A+V+GR D I GVSECIIMGIP+P+GTG+ K+ +R   P    
Sbjct: 948  SVLMLASFEKTTDHLFDAAVHGRADAINGVSECIIMGIPVPIGTGLFKLLKRATRP---- 1003

Query: 1257 YGAPDPIMS 1265
               PDP+ S
Sbjct: 1004 -SEPDPVPS 1011


>gi|441657982|ref|XP_003274523.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Nomascus
            leucogenys]
          Length = 1275

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1029 (49%), Positives = 683/1029 (66%), Gaps = 54/1029 (5%)

Query: 259  RVSDHNIEKLRQCIQNGPDKYPGARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
            +V++ NI  LR+ +QNGP+ +PGA  I  R+      + YG  R ++A ELK G IV+RH
Sbjct: 250  QVNNANINFLRKLVQNGPEVHPGANFIQQRHTQMKRFLKYGN-REKMAQELKYGDIVERH 308

Query: 317  LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
            L DGDVVLFNRQPSLH++SIM H AR+ P RT RFNE VC PYNADFDGDEMN+H+PQTE
Sbjct: 309  LIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTE 368

Query: 377  EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
            EA+ EAL+LMG + NL TP+NGE L+A+ QDFLT ++L+T KDTF+DRA    +   +  
Sbjct: 369  EAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILV 428

Query: 437  GMD---RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
            G D   +V LP P ILKPV LWTGKQ+FSV++RP  +  V  NL  K K Y  K      
Sbjct: 429  GKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSNDNPVRANLRTKGKQYCGK------ 482

Query: 494  DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
                  E +C ND +V  +NSEL+SG + K TLG+G+K+ ++ +LLRD+G +  +  M+R
Sbjct: 483  -----GEDLCANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSR 537

Query: 554  LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
            LA+L+  ++ N GFSIGI DV P + L   K +L++  Y+ C+  I+  N GKLQ +PGC
Sbjct: 538  LARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGC 597

Query: 614  DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
             A +TLEA+I   L+ IR+ AG AC+  L   NSPL M+ CGSKGS INISQM+ACVGQQ
Sbjct: 598  TAEETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQ 657

Query: 674  SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
            ++ G R P+GF +RSLPHF + +K PAAKGFVANSFYSGL+ TEFFFHTM GREGLVDTA
Sbjct: 658  AISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTA 717

Query: 734  VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
            VKTA+TGYM RRL+K+LEDL  QYD +VR++ G I+QF+YG DG+DPA MEGK  EPL F
Sbjct: 718  VKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEF 776

Query: 794  DRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLD 853
             R+L  +KA  P   +  LS  ++    E  +       C ++FL  ++KF +G  +K+ 
Sbjct: 777  KRVLDNIKAVFPCPSEPALSKNELILTTESIMKKSEFLCCQDSFLQEIKKFIKGVSEKIK 836

Query: 854  KKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGA 913
            K     +  G +D       V ++   IT  Q+E F++TC  +Y   ++E G+A+GA+ A
Sbjct: 837  KT---RDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCA 893

Query: 914  QSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAA 973
            QSIGEPGTQMTLKTFHFAGVASMNIT GVPRIKEIIN +K ISTPIITA+L+ +D+ + A
Sbjct: 894  QSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKDDDADYA 953

Query: 974  RVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPK 1033
            R+VKGRIEKTLLG++++ I+ V       I++ L +E I+   L +NA+ V+ SI  T K
Sbjct: 954  RLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-TSK 1012

Query: 1034 IKLKQQHIKVLDFRKLEIFPPVD-KSKIHFELYSLKNVLPMVIVKGI------------K 1080
            +++K   + V     + + P  + KS +++ L  LK  LP V  + +            +
Sbjct: 1013 LRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVKQQSLLMETQHLPVVNAE 1072

Query: 1081 TVERVVIAEKEKEKR-------------KVKENGEKKKYRLLVEGTGLQAVMGAEGIDGC 1127
            TV   +   K + K                +EN +   Y +L     L+  +        
Sbjct: 1073 TVRYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVL---QFLKEDLPKVKQQSL 1129

Query: 1128 KTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGIT 1187
              ++ H+  V++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+DLMT++GEVLGIT
Sbjct: 1130 LMETQHLPVVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGIT 1189

Query: 1188 RFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQ 1247
            RFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIPM +GTG+ K+  
Sbjct: 1190 RFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLH 1249

Query: 1248 ---RDAVPP 1253
               RD  PP
Sbjct: 1250 KADRDPNPP 1258



 Score = 45.1 bits (105), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 14/83 (16%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
           ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129 LKRPGLTYLQKRGLKKKISDKCR----KKNICHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58  ------VTESLQEFASAITHTKE 74
                 V+  LQ F +AI H KE
Sbjct: 184 KVVDPIVSNFLQSFETAIEHNKE 206


>gi|392512733|emb|CAD25541.2| DNA-DIRECTED RNA POLYMERASE III 160 kDa SUBUNIT (LARGEST SUBUNIT)
            [Encephalitozoon cuniculi GB-M1]
          Length = 1316

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/1254 (44%), Positives = 742/1254 (59%), Gaps = 104/1254 (8%)

Query: 14   LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTK 73
            +++ IV +C     K   C  C + NG +KK      I+H+   + +  ++  S     K
Sbjct: 139  ILRRIVAECK----KVNVCFVCSFRNGQIKKTFG-FRIVHEVEDLEKRKKDRGS-----K 188

Query: 74   ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIM 133
             S    +     +NP+  L +F  M + D E+L   E P +LII N+ VPP  IRPSV M
Sbjct: 189  GSDGVHSSCCEEINPLVALNVFNMMKEDDYELLGFLESPSRLIIQNVIVPPSCIRPSVSM 248

Query: 134  DGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVR--G 191
            D   +NE+DIT ++  I+ TN  L++ + + N        W+ LQ++ A  INS++   G
Sbjct: 249  DDEGTNEDDITIKISEIVHTNKVLREGIEKGNPLNLINEDWDHLQLQCALLINSELPQIG 308

Query: 192  VPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMA 251
            +P      +P+ G VQRLKGK GRFR NLSGKRV+++GRTVISPDPNL I EV IP RMA
Sbjct: 309  IP-----GQPVRGIVQRLKGKNGRFRCNLSGKRVDFSGRTVISPDPNLSIEEVGIPERMA 363

Query: 252  RILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGC 311
            +ILT  ERV+  N  KL+  + NGP+ YPGA  +        ++YGK      +ELK G 
Sbjct: 364  KILTISERVTRLNRRKLQALVLNGPENYPGANYVVGEKFKRFLMYGK----RDIELKYGE 419

Query: 312  IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMH 371
            +V+RHL DGD+VLFNRQPSLHRMSIM H+ R+   +TLRFNE VC PYNADFDGDEMN+H
Sbjct: 420  VVERHLMDGDMVLFNRQPSLHRMSIMSHKVRVHRNKTLRFNECVCTPYNADFDGDEMNVH 479

Query: 372  VPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMC 431
            VPQTE+AR EA +LM V NN+ TP++GE +VA+TQDF+T  +LIT KDTF+DR  F  + 
Sbjct: 480  VPQTEKARAEASVLMSVSNNIVTPRHGEPIVAATQDFITGLYLITGKDTFFDRERFGQLV 539

Query: 432  CYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS----NK 487
             Y  +   RV +  PAI KPVEL+TGKQL  VLI+      +  N        S    N+
Sbjct: 540  SYFSEA--RVGV-KPAIRKPVELFTGKQLIEVLIKDSFTASIERNAVTGNMAVSLVGKNR 596

Query: 488  LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNK-DGLYSVLLRDYGAHA 546
              +T  D         PNDG V   ++    G+L K+ +G  NK D L   +++   + A
Sbjct: 597  SFKTHDD---------PNDGSVAILDNSYYFGRLDKSIVGGENKRDSLIYAIMK-VSSMA 646

Query: 547  TSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGK 606
                MN + KL +R++G  GFSIG+DDVQP   L  KK  ++   Y  C  KI EY++  
Sbjct: 647  AVRAMNSITKLCSRYLGETGFSIGLDDVQPGPILRQKKEMVVRRGYAECESKILEYSK-- 704

Query: 607  LQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQM 666
               KP  +  + LE  I+ ILNRIRE+ G  C+  L  RNSP IM  CGSKGS IN+SQM
Sbjct: 705  ---KPEANE-EMLEMEISSILNRIREECGSICIKELGIRNSPNIMQACGSKGSKINVSQM 760

Query: 667  VACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGR 726
            VACVGQQ V G R PNG  +R LPHF R ++ P +KGFV NSF+ GL++ EFFFH + GR
Sbjct: 761  VACVGQQIVSGTRIPNGMDERCLPHFKRGSRTPESKGFVLNSFFDGLTSPEFFFHAVSGR 820

Query: 727  EGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
            EGLVDTAVKTA+TGYM RRL+KALEDLSIQYD SVRN+   +VQF YG+D +DPA  EG 
Sbjct: 821  EGLVDTAVKTAETGYMQRRLMKALEDLSIQYDGSVRNSNMEVVQFAYGEDQIDPAMSEGD 880

Query: 787  SGEPLNFDRLLMKVKAT-------CPPAGQRYLSPQQVSEIVEKQLAAYG---KESCSEA 836
              E +N +++ ++ K++        P     +L      +I+ ++L   G   +   +  
Sbjct: 881  --ESINLEQVFLRAKSSFLHSLGPSPDLYSSWLDEHGTIDIL-RRLTPKGYPFEHIANRR 937

Query: 837  FLNSLRKFFEGQ-QDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFS 895
            F+ SL +F E + +DK      F       D                      FI+T FS
Sbjct: 938  FVGSLLRFMESKHEDKFCFGGTFYRYFLSKD----------------------FIETFFS 975

Query: 896  RYRVKR----VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIING 951
                K     VE GT +GAI  QSIGEPGTQMTLKTFHFAGVASMNIT GVPR+KEIIN 
Sbjct: 976  MVSQKMMNLIVEPGTTVGAIAGQSIGEPGTQMTLKTFHFAGVASMNITLGVPRLKEIINA 1035

Query: 952  AKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
               ISTPII AEL+   +     V+KGR+++  L  V  S+  V++     + I +D+E+
Sbjct: 1036 VCNISTPIINAELDDPHDLFRTEVIKGRLDRISLKDVCSSLTEVISKDEIFLDIRVDLES 1095

Query: 1012 IQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVL 1071
            +  + L +N DI K       K+      ++V++   L +       + +F L  +K  L
Sbjct: 1096 L--SRLKLNLDIHK-----IEKLLNNHDQVRVVNENTLRVSIKKITDQSYFNLQRIKKKL 1148

Query: 1072 PMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKS 1131
                + G   V RV+I            N  +  Y L++EG GL  V+  +G+    T S
Sbjct: 1149 LNTKICGAPQVNRVII------------NSSRGLYSLVIEGRGLLNVINIDGVKAINTTS 1196

Query: 1132 NHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGI 1191
            N I EV++ LGIEAAR  II EI  T+  HG+ ID RH+MLLAD MT+RGEV GITRFGI
Sbjct: 1197 NSITEVEEVLGIEAARAQIIHEIEYTISNHGIKIDPRHIMLLADTMTYRGEVFGITRFGI 1256

Query: 1192 QKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             KM +S LMLASFE+T+D+LF A+V  + D I GVSE II+GIP+ +GTG + +
Sbjct: 1257 SKMSRSTLMLASFEQTSDYLFEAAVQSKSDEICGVSESIILGIPICIGTGSMDL 1310


>gi|19074431|ref|NP_585937.1| DNA-DIRECTED RNA POLYMERASE III 160 kDa SUBUNIT (LARGEST SUBUNIT)
            [Encephalitozoon cuniculi GB-M1]
          Length = 1349

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/1254 (44%), Positives = 742/1254 (59%), Gaps = 104/1254 (8%)

Query: 14   LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTK 73
            +++ IV +C     K   C  C + NG +KK      I+H+   + +  ++  S     K
Sbjct: 172  ILRRIVAECK----KVNVCFVCSFRNGQIKKTFG-FRIVHEVEDLEKRKKDRGS-----K 221

Query: 74   ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIM 133
             S    +     +NP+  L +F  M + D E+L   E P +LII N+ VPP  IRPSV M
Sbjct: 222  GSDGVHSSCCEEINPLVALNVFNMMKEDDYELLGFLESPSRLIIQNVIVPPSCIRPSVSM 281

Query: 134  DGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVR--G 191
            D   +NE+DIT ++  I+ TN  L++ + + N        W+ LQ++ A  INS++   G
Sbjct: 282  DDEGTNEDDITIKISEIVHTNKVLREGIEKGNPLNLINEDWDHLQLQCALLINSELPQIG 341

Query: 192  VPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMA 251
            +P      +P+ G VQRLKGK GRFR NLSGKRV+++GRTVISPDPNL I EV IP RMA
Sbjct: 342  IP-----GQPVRGIVQRLKGKNGRFRCNLSGKRVDFSGRTVISPDPNLSIEEVGIPERMA 396

Query: 252  RILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGC 311
            +ILT  ERV+  N  KL+  + NGP+ YPGA  +        ++YGK      +ELK G 
Sbjct: 397  KILTISERVTRLNRRKLQALVLNGPENYPGANYVVGEKFKRFLMYGK----RDIELKYGE 452

Query: 312  IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMH 371
            +V+RHL DGD+VLFNRQPSLHRMSIM H+ R+   +TLRFNE VC PYNADFDGDEMN+H
Sbjct: 453  VVERHLMDGDMVLFNRQPSLHRMSIMSHKVRVHRNKTLRFNECVCTPYNADFDGDEMNVH 512

Query: 372  VPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMC 431
            VPQTE+AR EA +LM V NN+ TP++GE +VA+TQDF+T  +LIT KDTF+DR  F  + 
Sbjct: 513  VPQTEKARAEASVLMSVSNNIVTPRHGEPIVAATQDFITGLYLITGKDTFFDRERFGQLV 572

Query: 432  CYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS----NK 487
             Y  +   RV +  PAI KPVEL+TGKQL  VLI+      +  N        S    N+
Sbjct: 573  SYFSEA--RVGV-KPAIRKPVELFTGKQLIEVLIKDSFTASIERNAVTGNMAVSLVGKNR 629

Query: 488  LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNK-DGLYSVLLRDYGAHA 546
              +T  D         PNDG V   ++    G+L K+ +G  NK D L   +++   + A
Sbjct: 630  SFKTHDD---------PNDGSVAILDNSYYFGRLDKSIVGGENKRDSLIYAIMK-VSSMA 679

Query: 547  TSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGK 606
                MN + KL +R++G  GFSIG+DDVQP   L  KK  ++   Y  C  KI EY++  
Sbjct: 680  AVRAMNSITKLCSRYLGETGFSIGLDDVQPGPILRQKKEMVVRRGYAECESKILEYSK-- 737

Query: 607  LQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQM 666
               KP  +  + LE  I+ ILNRIRE+ G  C+  L  RNSP IM  CGSKGS IN+SQM
Sbjct: 738  ---KPEANE-EMLEMEISSILNRIREECGSICIKELGIRNSPNIMQACGSKGSKINVSQM 793

Query: 667  VACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGR 726
            VACVGQQ V G R PNG  +R LPHF R ++ P +KGFV NSF+ GL++ EFFFH + GR
Sbjct: 794  VACVGQQIVSGTRIPNGMDERCLPHFKRGSRTPESKGFVLNSFFDGLTSPEFFFHAVSGR 853

Query: 727  EGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
            EGLVDTAVKTA+TGYM RRL+KALEDLSIQYD SVRN+   +VQF YG+D +DPA  EG 
Sbjct: 854  EGLVDTAVKTAETGYMQRRLMKALEDLSIQYDGSVRNSNMEVVQFAYGEDQIDPAMSEGD 913

Query: 787  SGEPLNFDRLLMKVKAT-------CPPAGQRYLSPQQVSEIVEKQLAAYG---KESCSEA 836
              E +N +++ ++ K++        P     +L      +I+ ++L   G   +   +  
Sbjct: 914  --ESINLEQVFLRAKSSFLHSLGPSPDLYSSWLDEHGTIDIL-RRLTPKGYPFEHIANRR 970

Query: 837  FLNSLRKFFEGQ-QDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFS 895
            F+ SL +F E + +DK      F       D                      FI+T FS
Sbjct: 971  FVGSLLRFMESKHEDKFCFGGTFYRYFLSKD----------------------FIETFFS 1008

Query: 896  RYRVKR----VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIING 951
                K     VE GT +GAI  QSIGEPGTQMTLKTFHFAGVASMNIT GVPR+KEIIN 
Sbjct: 1009 MVSQKMMNLIVEPGTTVGAIAGQSIGEPGTQMTLKTFHFAGVASMNITLGVPRLKEIINA 1068

Query: 952  AKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
               ISTPII AEL+   +     V+KGR+++  L  V  S+  V++     + I +D+E+
Sbjct: 1069 VCNISTPIINAELDDPHDLFRTEVIKGRLDRISLKDVCSSLTEVISKDEIFLDIRVDLES 1128

Query: 1012 IQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVL 1071
            +  + L +N DI K       K+      ++V++   L +       + +F L  +K  L
Sbjct: 1129 L--SRLKLNLDIHK-----IEKLLNNHDQVRVVNENTLRVSIKKITDQSYFNLQRIKKKL 1181

Query: 1072 PMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKS 1131
                + G   V RV+I            N  +  Y L++EG GL  V+  +G+    T S
Sbjct: 1182 LNTKICGAPQVNRVII------------NSSRGLYSLVIEGRGLLNVINIDGVKAINTTS 1229

Query: 1132 NHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGI 1191
            N I EV++ LGIEAAR  II EI  T+  HG+ ID RH+MLLAD MT+RGEV GITRFGI
Sbjct: 1230 NSITEVEEVLGIEAARAQIIHEIEYTISNHGIKIDPRHIMLLADTMTYRGEVFGITRFGI 1289

Query: 1192 QKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             KM +S LMLASFE+T+D+LF A+V  + D I GVSE II+GIP+ +GTG + +
Sbjct: 1290 SKMSRSTLMLASFEQTSDYLFEAAVQSKSDEICGVSESIILGIPICIGTGSMDL 1343


>gi|449330082|gb|AGE96346.1| DNA-directed RNA polymerase III 160 kDa subunit [Encephalitozoon
            cuniculi]
          Length = 1349

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/1254 (44%), Positives = 742/1254 (59%), Gaps = 104/1254 (8%)

Query: 14   LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTK 73
            +++ IV +C     K   C  C + NG +KK      I+H+   + +  ++  S     K
Sbjct: 172  ILRRIVAECK----KVNVCFVCSFRNGQIKKTFG-FRIVHEVEDLEKRKKDKGS-----K 221

Query: 74   ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIM 133
             S    +     +NP+  L +F  M + D E+L   E P +LII N+ VPP  IRPSV M
Sbjct: 222  GSDGVHSSCCEEINPLVALNVFNMMKEDDYELLGFLESPSRLIIQNVIVPPSCIRPSVSM 281

Query: 134  DGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVR--G 191
            D   +NE+DIT ++  I+ TN  L++ + + N        W+ LQ++ A  INS++   G
Sbjct: 282  DDEGTNEDDITIKISEIVHTNKVLREGIEKGNPLNLINEDWDHLQLQCALLINSELPQIG 341

Query: 192  VPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMA 251
            +P      +P+ G VQRLKGK GRFR NLSGKRV+++GRTVISPDPNL I EV IP RMA
Sbjct: 342  IP-----GQPVRGIVQRLKGKNGRFRCNLSGKRVDFSGRTVISPDPNLSIEEVGIPERMA 396

Query: 252  RILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGC 311
            +ILT  ERV+  N  KL+  + NGP+ YPGA  +        ++YGK      +ELK G 
Sbjct: 397  KILTISERVTRLNRRKLQALVLNGPENYPGANYVVGEKFKRFLMYGK----RDIELKYGE 452

Query: 312  IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMH 371
            +V+RHL DGD+VLFNRQPSLHRMSIM H+ R+   +TLRFNE VC PYNADFDGDEMN+H
Sbjct: 453  VVERHLMDGDMVLFNRQPSLHRMSIMSHKVRVHRNKTLRFNECVCTPYNADFDGDEMNVH 512

Query: 372  VPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMC 431
            VPQTE+AR EA +LM V NN+ TP++GE +VA+TQDF+T  +LIT KDTF+DR  F  + 
Sbjct: 513  VPQTEKARAEASVLMSVSNNIVTPRHGEPIVAATQDFITGLYLITGKDTFFDRERFGQLV 572

Query: 432  CYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS----NK 487
             Y  +   RV +  PAI KPVEL+TGKQL  VLI+      +  N        S    N+
Sbjct: 573  SYFSEA--RVGV-KPAIRKPVELFTGKQLIEVLIKDSFTASIERNAVTGNMAVSLVGKNR 629

Query: 488  LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNK-DGLYSVLLRDYGAHA 546
              +T  D         PNDG V   ++    G+L K+ +G  NK D L   +++   + A
Sbjct: 630  SFKTHDD---------PNDGSVAILDNSYYFGRLDKSIVGGENKRDSLIYAIMK-VSSMA 679

Query: 547  TSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGK 606
                MN + KL +R++G  GFSIG+DDVQP   L  KK  ++   Y  C  KI EY++  
Sbjct: 680  AVRAMNSITKLCSRYLGETGFSIGLDDVQPGPILRQKKEMVVRRGYAECESKILEYSK-- 737

Query: 607  LQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQM 666
               KP  +  + LE  I+ ILNRIRE+ G  C+  L  RNSP IM  CGSKGS IN+SQM
Sbjct: 738  ---KPEANE-EMLEMEISSILNRIREECGSICIKELGIRNSPNIMQACGSKGSKINVSQM 793

Query: 667  VACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGR 726
            VACVGQQ V G R PNG  +R LPHF R ++ P +KGFV NSF+ GL++ EFFFH + GR
Sbjct: 794  VACVGQQIVSGTRIPNGMDERCLPHFKRGSRTPESKGFVLNSFFDGLTSPEFFFHAVSGR 853

Query: 727  EGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
            EGLVDTAVKTA+TGYM RRL+KALEDLSIQYD SVRN+   +VQF YG+D +DPA  EG 
Sbjct: 854  EGLVDTAVKTAETGYMQRRLMKALEDLSIQYDGSVRNSNMEVVQFAYGEDQIDPAMSEGD 913

Query: 787  SGEPLNFDRLLMKVKAT-------CPPAGQRYLSPQQVSEIVEKQLAAYG---KESCSEA 836
              E +N +++ ++ K++        P     +L      +I+ ++L   G   +   +  
Sbjct: 914  --ESINLEQVFLRAKSSFLHSLGPSPDLYSSWLDEHGTIDIL-RRLTPKGYPFEHIANRR 970

Query: 837  FLNSLRKFFEGQ-QDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFS 895
            F+ SL +F E + +DK      F       D                      FI+T FS
Sbjct: 971  FVGSLLRFMESKHEDKFCFGGTFYRYFLSKD----------------------FIETFFS 1008

Query: 896  RYRVKR----VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIING 951
                K     VE GT +GAI  QSIGEPGTQMTLKTFHFAGVASMNIT GVPR+KEIIN 
Sbjct: 1009 MVSQKMMNLIVEPGTTVGAIAGQSIGEPGTQMTLKTFHFAGVASMNITLGVPRLKEIINA 1068

Query: 952  AKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
               ISTPII AEL+   +     V+KGR+++  L  V  S+  V++     + I +D+E+
Sbjct: 1069 VCNISTPIINAELDDPHDLFRTEVIKGRLDRISLKDVCSSLTEVISKDEIFLDIRVDLES 1128

Query: 1012 IQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVL 1071
            +  + L +N DI K       K+      ++V++   L +       + +F L  +K  L
Sbjct: 1129 L--SRLKLNLDIHK-----IEKLLNNHDQVRVVNENTLRVSIKKITDQSYFNLQRIKKKL 1181

Query: 1072 PMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKS 1131
                + G   V RV+I            N  +  Y L++EG GL  V+  +G+    T S
Sbjct: 1182 LNTKICGAPQVNRVII------------NSSRGLYSLVIEGRGLLNVINIDGVKAINTTS 1229

Query: 1132 NHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGI 1191
            N I EV++ LGIEAAR  II EI  T+  HG+ ID RH+MLLAD MT+RGEV GITRFGI
Sbjct: 1230 NSITEVEEVLGIEAARAQIIHEIEYTISNHGIKIDPRHIMLLADTMTYRGEVFGITRFGI 1289

Query: 1192 QKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             KM +S LMLASFE+T+D+LF A+V  + D I GVSE II+GIP+ +GTG + +
Sbjct: 1290 SKMSRSTLMLASFEQTSDYLFEAAVQSKSDEICGVSESIILGIPICIGTGSMDL 1343


>gi|303389791|ref|XP_003073127.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
            intestinalis ATCC 50506]
 gi|303302272|gb|ADM11767.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
            intestinalis ATCC 50506]
          Length = 1315

 Score =  940 bits (2430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/1251 (44%), Positives = 748/1251 (59%), Gaps = 93/1251 (7%)

Query: 16   KSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKES 75
            K I++K      KA  C  C   NG VKK            ++   +++         + 
Sbjct: 137  KLILRKIIAECKKANVCFVCSSRNGQVKKTFGF--------RMVHEIEDLEKRKKDKNKG 188

Query: 76   KAAVNVATYI-LNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMD 134
               VN + Y  +NP+  L +F+ M + D E+L  SE PE+LII +I VPP  IRPSV MD
Sbjct: 189  SGGVNSSDYEEINPLMALNIFRMMKEDDYELLGFSESPERLIIQSIIVPPSCIRPSVSMD 248

Query: 135  GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVR--GV 192
               +NE+DIT ++  I+ TN  L++ + + N        W+ LQ++ A  INS++   G+
Sbjct: 249  DEGTNEDDITIKISEIVHTNKVLKEGIEKGNPLNLINEDWDHLQLQCALLINSELPQVGI 308

Query: 193  PFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMAR 252
            P      +P+ G VQRLKGK GRFR NLSGKRV+++GRTVISPDPNL I EV IP RMA+
Sbjct: 309  P-----GQPIRGIVQRLKGKNGRFRCNLSGKRVDFSGRTVISPDPNLSIEEVGIPERMAK 363

Query: 253  ILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCI 312
            ILT  ERV+  N +KL+  + NGP+KYPGA  +        ++YGK       ELK G +
Sbjct: 364  ILTISERVTSFNKKKLQALVLNGPEKYPGANYVVGEKFKRFLMYGK----KDTELKEGEV 419

Query: 313  VDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHV 372
            V+RHL DGD+VLFNRQPSLHRMSIM H+ ++   +TLRFNE VC PYNADFDGDEMN+HV
Sbjct: 420  VERHLLDGDMVLFNRQPSLHRMSIMSHKVKVHGNKTLRFNECVCTPYNADFDGDEMNVHV 479

Query: 373  PQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCC 432
            PQTE+AR E+ +LM V NN+ TP++GE +VA+TQDF+T  +LIT KDTF+DR  F  +  
Sbjct: 480  PQTEKARAESSILMSVSNNIVTPRHGEPIVAATQDFITGLYLITGKDTFFDRERFGQLVS 539

Query: 433  YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH--ANMRVY-------VNLTVKEKT 483
            Y  +   R+ +  PAI KPVEL+TGKQL   LI+    A+   Y       ++L  K ++
Sbjct: 540  YFSE--TRISM-KPAIKKPVELFTGKQLVEALIKDSFAASREDYRSPYGGCISLVGKNRS 596

Query: 484  YSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNK-DGLYSVLLRDY 542
            +     +T  D         PNDG V   ++    G+L K+ +G  NK D L   +++  
Sbjct: 597  F-----KTHDD---------PNDGSVIILDNLYYFGRLDKSIIGGENKKDSLIYAIMK-V 641

Query: 543  GAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEY 602
               A    MN + KL +R++G  GFSIG+DDVQP   L  KK  ++ + Y  C  KI EY
Sbjct: 642  SNKAAIRVMNSITKLCSRYLGEVGFSIGLDDVQPGPILRQKKETVVGKGYLECENKILEY 701

Query: 603  NEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPIN 662
            +      K    + + LE  I+ ILNRIRE+ G  C+  L  RNSP  M  CGSKGS IN
Sbjct: 702  S------KKSESSEEMLEMEISSILNRIREECGSICINELSIRNSPNTMQACGSKGSKIN 755

Query: 663  ISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHT 722
            +SQMVACVGQQ V G R PNG  DR LPHF + ++ P +KGFV NSF+ GL++ EFFFH 
Sbjct: 756  VSQMVACVGQQIVSGTRIPNGMDDRCLPHFRKGSRTPESKGFVRNSFFDGLTSPEFFFHA 815

Query: 723  MGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPAN 782
            + GREGLVDTAVKTA+TGYM RRL+KALEDLS+QYD SVRN+   +VQF YG+D +DP  
Sbjct: 816  VSGREGLVDTAVKTAETGYMQRRLMKALEDLSVQYDGSVRNSNMEVVQFSYGEDQIDPVI 875

Query: 783  MEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLR 842
             EG   +P+N +R+ ++ K+         L+  + S  ++        ESC    ++SLR
Sbjct: 876  SEGD--DPVNLERVFLQAKSVF----LHQLNSGRFSHSLQ-------PESCD--VIDSLR 920

Query: 843  KFF-EGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKR 901
            +   +G   +     +FV+ +    KS+  E  +   +         F++T F     K 
Sbjct: 921  ELIPKGYPIERMINKRFVKSLQELIKSKSEERFSFDGTSFPYFSSRDFVRTFFFMVSQKM 980

Query: 902  ----VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRIST 957
                +E GT +GAI  QSIGEPGTQMTLKTFHFAGVASMNIT GVPR+KEIIN    IST
Sbjct: 981  MDLIIEPGTTVGAIAGQSIGEPGTQMTLKTFHFAGVASMNITLGVPRLKEIINAVCNIST 1040

Query: 958  PIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHL 1017
            PII AEL  + N  AA V+KGRI +  L  +  S+  V+      + IA+D+E++  + L
Sbjct: 1041 PIINAELNDSQNLFAAEVIKGRIGRISLKDICSSLTEVVDKEEIFLDIAIDLESL--SRL 1098

Query: 1018 CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVK 1077
             +N DI K       ++      I+++    L +F      + +F L  +K  L    + 
Sbjct: 1099 KLNLDIHK-----IERLLSLHDQIRIVGNNVLRVFIKKITDQSYFNLQKIKKKLLGTRIC 1153

Query: 1078 GIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEV 1137
            G   + RV+I            N  K +Y L++EGTGL +V+  +GI      SN + EV
Sbjct: 1154 GAPQISRVII------------NSNKGQYSLVIEGTGLLSVINTDGIRCSSVTSNSVTEV 1201

Query: 1138 QQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKS 1197
            ++ LGIEAAR  II EI  T+  HG+ ID RH+MLLAD MT+RGEV GITRFGI KM +S
Sbjct: 1202 EEVLGIEAARAQIIHEIEYTISNHGIKIDPRHIMLLADTMTYRGEVFGITRFGISKMSRS 1261

Query: 1198 VLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
             LMLASFE+T+D+LF A+   + D I GVSE II+GIP+ +GTG + +  R
Sbjct: 1262 TLMLASFEQTSDYLFEAAAQNKSDEICGVSESIILGIPICIGTGSIDLYWR 1312


>gi|118346269|ref|XP_977135.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena
            thermophila]
 gi|89288380|gb|EAR86368.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena thermophila
            SB210]
          Length = 1418

 Score =  939 bits (2428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/1338 (41%), Positives = 779/1338 (58%), Gaps = 140/1338 (10%)

Query: 11   KTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIH--DRSKVTESL------ 62
            + DL   + K+C   A++  KC  CGY NG +KK   +   I   D++K+ +        
Sbjct: 88   RADLYVKMRKECKKGANQ--KCRSCGYKNGPLKKMPKMPTTISFSDQTKLEQDFRDIRES 145

Query: 63   ----QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL----SERPEK 114
                QE    I  +K  K  +     ILNP+    +F+++T   C+ + L       P  
Sbjct: 146  EDIFQENLRKILESKNMKEMIE----ILNPLETYKIFRKIT---CDEILLFNIQQNHPCD 198

Query: 115  LIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGW 174
            LI+T+I  PP  IRP+V    S    +D+T +++  +  N  + Q + +     K    W
Sbjct: 199  LILTHIIAPPACIRPTVKEGESNVRHDDLTVKIRDFLDRNKRIAQMIEDGEDLIKINQEW 258

Query: 175  ETLQVEVAQYINSDVRGVPFSMQV---ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRT 231
              LQ   A Y+N++   +PF M      + +    QRLKGK+GRFRGNLSGKR  +TGRT
Sbjct: 259  FLLQCSHAHYLNAETPNLPFKMDKDFGKKDIRALAQRLKGKKGRFRGNLSGKRSNFTGRT 318

Query: 232  VISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGT 291
            VISPDPN+ I  V +P  MA+ILT+PE+V+  NIE+L++ + NGP+KYPGA  I   D  
Sbjct: 319  VISPDPNIPIDNVVVPEYMAKILTFPEQVNAINIERLKKLVINGPEKYPGAHYIIAKDTE 378

Query: 292  ARV-LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 350
             +  L    R + A ELK G IV+RH+++G+++LFNRQPSLHR+SIM  +A I  W T+R
Sbjct: 379  DKFNLSIDNRRKKADELKIGDIVERHIQNGEILLFNRQPSLHRISIMAFKANIQKWNTIR 438

Query: 351  FNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLT 410
            FNE  C P+NADFDGDEMN+HVPQT EAR EA  L+ V+ NL +PKNGE       DFLT
Sbjct: 439  FNECCCAPFNADFDGDEMNIHVPQTIEARAEAQYLLDVKQNLISPKNGE-------DFLT 491

Query: 411  SSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV------------------ 452
            +++LIT KD F+DRAAF   C Y  DG++R+DLP PAI+ PV                  
Sbjct: 492  TAYLITHKDMFFDRAAFCQCCTYFSDGIERIDLPPPAIILPVGMKYYLLNIFQSQIYQQK 551

Query: 453  ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFR 512
            E+WTGKQ+  V++RP+    + VNL +KEK Y  K  R           MCP DG+V F+
Sbjct: 552  EMWTGKQIIDVILRPNRFSNIIVNLILKEKCYDTKQDRG---------VMCPTDGYVVFQ 602

Query: 513  NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
            +SEL+ G LGK TLG+GNK+GL+  L RD   +  +  M+R AKLSARWI N+G +IGI 
Sbjct: 603  SSELMCGNLGKTTLGSGNKNGLFYRLSRDNSQYMAASVMSRFAKLSARWITNYGMTIGIS 662

Query: 573  DVQPKKELSDKKGKLISENYEVCNVK--IKEYNEGKLQLKPGCDAAQTLEAVITDILNRI 630
            DV P   L+    K   E  + C  +  I   + GKL ++   D  + +EA I+  LN++
Sbjct: 663  DVTPSPSLNKINEKKKDEAIDSCKFQSLIFTNSIGKLDMQTVSDRKKLVEAEISKTLNQV 722

Query: 631  REDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLP 690
            RED G  C   LP  N PLIM+ CGSKGS  N+SQM+ CVGQQ +GGRR PNGF  R+LP
Sbjct: 723  REDIGSNCNKQLPPTNGPLIMATCGSKGSATNLSQMIGCVGQQIIGGRRVPNGFTGRTLP 782

Query: 691  HFPRKA--KEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIK 748
            HF +      P A GFV NSF++GLSA EFFFHTM GRE LVDTAVKTADTG    RL+K
Sbjct: 783  HFEKDEIFPHPEAMGFVRNSFFTGLSAPEFFFHTMAGRESLVDTAVKTADTG----RLVK 838

Query: 749  ALEDLSIQYDNSVRNAGGC-IVQFLYGDDGMDPANMEGKSGE---PLNFDRLLMKVKATC 804
             LEDLS+ YD ++R      +VQF YG DG+ P   E K  +   P++ + +L  VK+  
Sbjct: 839  MLEDLSVNYDLTIRTCDKKELVQFRYGGDGICPWMSEEKVTDKSIPIDLETMLKYVKSIA 898

Query: 805  PPAGQR--YLSPQQVSEIVEKQLAA----YGKESCSEAFLNSL------RKFFEGQQDKL 852
            P   +R   L P Q+ +I  ++L      Y  E   E   NS       + + + Q +  
Sbjct: 899  PINYKREQSLYPYQIYQICLEELKRTKMDYIPELSLEPMQNSSYNREFDQDYIQQQLNST 958

Query: 853  DKK-----IKFVEDIGWDDKSQILEEVTHK----------------------------TS 879
            D K     +K   +   D  S  ++++  K                            T 
Sbjct: 959  DNKFDVQLVKEPLEYFKDSVSLFIKQICQKIMKVRTQLGLTPGDIESPDNATSIHVDNTI 1018

Query: 880  GITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNIT 939
             IT++Q+  F +T + RY    VE G A+GA+GA SI EP TQMTLK+FHFAGVASMNIT
Sbjct: 1019 HITKRQINYFFKTLWERYPQMLVEPGEAVGAVGATSISEPATQMTLKSFHFAGVASMNIT 1078

Query: 940  QGVPRIKEIINGAKRISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            QGVPR+KEII+ AK+ISTPII  +L     +E++ R ++ +IEKT LG+++   + V + 
Sbjct: 1079 QGVPRMKEIIDAAKKISTPIIDVKLLPQFQSEHSYRSIRLQIEKTYLGEISNFYQEVYSP 1138

Query: 999  RLASIVIALDMETIQDAHLC---INADIVKESIVQTPK-------IKLKQQHIKVLDFRK 1048
            +   + I  + + ++   L    I    +K+ I++  K       I +K Q +K +    
Sbjct: 1139 KDCHLYIEYNKKKLEQFRLYGLEIPLSSIKKGILEIAKDIKEDQIIAVKDQDLKPVG--- 1195

Query: 1049 LEIFPPVD-KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYR 1107
            ++I P  D K  + F++ + K +LP  +V G+K V+RV I+   K+K+K  +N  + K+ 
Sbjct: 1196 IKINPGNDVKKNVFFKIQNWKKILPGAVVSGMKDVKRVSIS---KDKKKGDKN--EYKFD 1250

Query: 1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
            L VEG   + V+  + +D   T S  IFEV Q LG+EAAR  II+EI +T+K+H +++D+
Sbjct: 1251 LFVEGNSFKQVLQLDEVDFANTLSVDIFEVLQILGVEAARKTIINEITKTIKSHSLNVDR 1310

Query: 1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
            RH++L+AD++T +G + G TR GI  M  S LMLASFEKT + L+NA++ GR D +EGVS
Sbjct: 1311 RHLILVADVLTSKGRLHGSTRQGINSMKDSTLMLASFEKTTEILYNAALQGRKDTLEGVS 1370

Query: 1228 ECIIMGIPMPLGTGILKI 1245
            E II+G  +P+GTG   +
Sbjct: 1371 ERIIIGQNIPMGTGTFNL 1388


>gi|401826841|ref|XP_003887513.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon hellem ATCC
            50504]
 gi|392998519|gb|AFM98532.1| DNA-directed RNA polymerase subunit beta' [Encephalitozoon hellem
            ATCC 50504]
          Length = 1314

 Score =  939 bits (2426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/1249 (44%), Positives = 751/1249 (60%), Gaps = 96/1249 (7%)

Query: 16   KSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKES 75
            K I++K      KA  C  C   NG VKK      I+H+     +  ++        + +
Sbjct: 137  KLILRKVIAECKKANMCFVCSSRNGQVKKTFG-FRIVHEIEDPEKRKKD--------RSA 187

Query: 76   KAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMD 134
            K   + + Y  +NP+  L +FK M + D E+L  SE PE+LII N+ VPP  IRPSV MD
Sbjct: 188  KGGTHFSHYEDINPLTALNVFKMMKEDDYELLGFSESPERLIIQNVIVPPSCIRPSVSMD 247

Query: 135  GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVR--GV 192
               +NE+DIT ++  I+ TN  L++ + + N        W+ LQ++ A  INS++   G+
Sbjct: 248  DEGTNEDDITIKISEIVHTNKVLKEGIEKGNPLNLINEDWDHLQLQCALLINSELPQVGI 307

Query: 193  PFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMAR 252
            P      +P+ G VQRLKGK GRFR NLSGKRV+++GRTVISPDPNL I EV IP RMA+
Sbjct: 308  P-----GQPVRGIVQRLKGKNGRFRCNLSGKRVDFSGRTVISPDPNLSIEEVGIPERMAK 362

Query: 253  ILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCI 312
            ILT  ERV+  N +KL+  + NGP+KYPGA  +        ++YGK       ELK G I
Sbjct: 363  ILTISERVTSFNKKKLQSLVLNGPEKYPGANYVVGEKFKRFLMYGK----RDTELKHGEI 418

Query: 313  VDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHV 372
            V+RHL DGD+VLFNRQPSLHRMSIM H+ ++   +TLRFNE VC PYNADFDGDEMN+HV
Sbjct: 419  VERHLLDGDMVLFNRQPSLHRMSIMSHKVKVHNSKTLRFNECVCTPYNADFDGDEMNVHV 478

Query: 373  PQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCC 432
            PQTE+AR EA +LM V NN+ TP++GE ++A+TQDF+T  +LIT KDTF+DR  F  +  
Sbjct: 479  PQTEKARAEASILMSVSNNIVTPRHGEPIIAATQDFITGLYLITGKDTFFDRERFGQLVS 538

Query: 433  YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS----NKL 488
            Y  +   R+++  PAI KPVEL+TGKQL   LI+          +++++K+ S    N+ 
Sbjct: 539  YFSE--TRINV-KPAIKKPVELFTGKQLVEALIKDSFYGSSEGAMSLQDKSISLIGKNRS 595

Query: 489  IRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNK-DGLYSVLLRDYGAHAT 547
             ++  D         PNDG V   ++    G+L K+ +G  NK D L   +++     A 
Sbjct: 596  FKSFSD---------PNDGSVVILDNAYYFGRLDKSIIGGENKKDSLIYAIMK-VSNKAA 645

Query: 548  SGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL 607
               MN + KL +R++G  GFSIG+DDVQP   L  KK  ++++ Y  C  KI E+++ +L
Sbjct: 646  VRVMNSITKLCSRYLGEVGFSIGLDDVQPGPILRQKKEMVVNKGYSECKNKILEHSK-RL 704

Query: 608  QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
            +        + LE  I+ ILNRIRE+ G  C+  L  RNSP  M  CGSKGS IN+SQMV
Sbjct: 705  E-----SNEEVLEMEISSILNRIREECGSICIKELSIRNSPNTMQACGSKGSKINVSQMV 759

Query: 668  ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
            ACVGQQ V G R PNG  DR LPHF + +K P +KGFV NSF+ GL++ EFFFH + GRE
Sbjct: 760  ACVGQQIVSGTRIPNGMDDRCLPHFRKGSKTPESKGFVLNSFFDGLTSPEFFFHAVSGRE 819

Query: 728  GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
            GLVDTAVKTA+TGYM RRL+KALEDLSIQYD SVRN+   +VQF YG+D +DP   EG  
Sbjct: 820  GLVDTAVKTAETGYMQRRLMKALEDLSIQYDGSVRNSNMEVVQFAYGEDQIDPVMSEGD- 878

Query: 788  GEPLNFDRLLMKVKA----TCPPAGQRY---LSPQQVSEIVEKQL-AAYG-KESCSEAFL 838
             +P N +R+ ++ K+        +   Y   L  Q V + + K +   Y  K   ++ F+
Sbjct: 879  -DPFNLERVFLQSKSKFLRNLDLSQTPYPFELKEQDVVDNLRKSIPKGYPVKRIVNKRFI 937

Query: 839  NSLRKFFEGQ-QDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRY 897
             SL +F E + +D+      F      D  ++I        S I++K +++ I       
Sbjct: 938  QSLLEFIESKREDRFLLDGTFYSYFSCDGFAKIF------FSTISQKMMDLII------- 984

Query: 898  RVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRIST 957
                 E GT +GAI  QSIGEPGTQMTLKTFHFAGVASMNIT GVPR+KEIIN    IST
Sbjct: 985  -----EPGTTVGAIAGQSIGEPGTQMTLKTFHFAGVASMNITLGVPRLKEIINAVCNIST 1039

Query: 958  PIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHL 1017
            PII AEL+   N   A V+KGRI+K  L  V   I  V+      + + +D+ET+  + L
Sbjct: 1040 PIINAELDDPYNLFRAEVIKGRIDKISLKDVCCLITEVIGKDEIFLDVTIDLETL--SRL 1097

Query: 1018 CINADIVK-ESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIV 1076
             +N DI K E  +  P         KV     + ++      + +F L  +K  L    +
Sbjct: 1098 KLNLDIHKIEKSLNLP------DQTKVTSENSIRVYVKKIDDQSYFNLQKVKKKLLGTRI 1151

Query: 1077 KGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFE 1136
             G   V RV+I            N  +  Y L++EG GL  V+  +G+    T SN + E
Sbjct: 1152 CGAPQVSRVII------------NSNRGHYSLVIEGHGLLNVINTDGVKSSTTTSNSVTE 1199

Query: 1137 VQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDK 1196
            V++ LGIEAAR  II EI  T+  HG+ ID RH+MLLAD MT+RGEV GITRFGI KM +
Sbjct: 1200 VEEVLGIEAARAQIIHEIEYTISNHGIKIDPRHIMLLADTMTYRGEVFGITRFGISKMSR 1259

Query: 1197 SVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            S LMLASFE+T+D+LF A+V  + D I GVSE II+GIP+ +GTG + +
Sbjct: 1260 STLMLASFEQTSDYLFEAAVQSKSDEICGVSESIILGIPICIGTGSMDL 1308


>gi|396081638|gb|AFN83253.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon romaleae
            SJ-2008]
          Length = 1315

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1247 (44%), Positives = 731/1247 (58%), Gaps = 95/1247 (7%)

Query: 18   IVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD-----RSKVTESLQEFASAITHT 72
            I++K      KA  C  C   NG VKK      I H+     R K  +  +       H 
Sbjct: 139  ILRKVIAECKKANMCFVCSSRNGQVKKTFG-FRIAHEIEDSERKKRDKDGKGPGGYFPHH 197

Query: 73   KESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVI 132
            +E           +NP+  L +FK M + D E+L  SE P++LII N+ VPP  IRPSV 
Sbjct: 198  EE-----------MNPLMALNIFKMMKEDDYELLGFSESPDRLIIQNVIVPPSCIRPSVS 246

Query: 133  MDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVR-- 190
            MD   +NE+DIT ++  I+ TN  L++ + + N        W+ LQ++ A  INS++   
Sbjct: 247  MDDEGTNEDDITIKISEIVHTNKILKEGIEKGNPLNLINEDWDHLQLQCALLINSELPQV 306

Query: 191  GVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRM 250
            G+P      +P+ G VQRLKGK GRFR NLSGKRV+++GRTVISPDPNL I EV IP RM
Sbjct: 307  GIP-----GQPVRGIVQRLKGKNGRFRCNLSGKRVDFSGRTVISPDPNLSIEEVGIPERM 361

Query: 251  ARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSG 310
            A+ILT  E+V+  N EKL+  + NGP+KYPGA  +        ++YGK       ELK G
Sbjct: 362  AKILTISEKVTRFNKEKLQSLVLNGPEKYPGANYVVGEKFKRFLMYGK----RDAELKYG 417

Query: 311  CIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNM 370
             +V+RHL DGD++LFNRQPSLHRMSIM H+ +I   +TLRFNE VC PYNADFDGDEMN+
Sbjct: 418  EVVERHLLDGDMILFNRQPSLHRMSIMSHKVKIHNNKTLRFNECVCTPYNADFDGDEMNV 477

Query: 371  HVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLM 430
            HVPQTE+AR EA +LM V NN+ TP++GE ++A TQDF+T  +LIT KDTF+DR  F  +
Sbjct: 478  HVPQTEKARAEASILMSVSNNIVTPRHGEPIIAPTQDFITGLYLITGKDTFFDRERFGQL 537

Query: 431  CCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIR 490
              Y      RV++  PAI +PVEL+TGKQL   LI+       +  +  +   Y +K I 
Sbjct: 538  VSYFSG--TRVNI-KPAIRRPVELFTGKQLIEALIKDS-----FGGIKERSTEYQDKSIS 589

Query: 491  TEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGC 550
              G          PNDG V   ++    G+L K+ +G  NK       +      A    
Sbjct: 590  LIGKNRSFKSRNDPNDGNVIILDNSYYFGRLDKSIIGGENKKNSLIYAIMKVSNKAAVRV 649

Query: 551  MNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLK 610
            MN + KL +R++G  GFSIG+DDVQP   L  KK  ++ + Y  C  KI EY+      K
Sbjct: 650  MNSITKLCSRYLGEVGFSIGLDDVQPGPILRKKKEMVVGKGYSECESKILEYS------K 703

Query: 611  PGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACV 670
                  + LE  I+ ILNRIRE+ G  C+  L  RNSP  M  CGSKGS IN+SQMVACV
Sbjct: 704  KSESNEEVLEMEISSILNRIREECGSICIKELSIRNSPNTMQACGSKGSKINVSQMVACV 763

Query: 671  GQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLV 730
            GQQ V G R PNG  DR LPHFPR  + P +KGFV NSF+ GL++ EFFFH + GREGLV
Sbjct: 764  GQQIVSGTRIPNGMDDRCLPHFPRGCRTPESKGFVLNSFFDGLTSPEFFFHAVSGREGLV 823

Query: 731  DTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEP 790
            DTAVKTA+TGYM RRL+KALEDLSIQYD SVRN+   +VQF +G+D +DP   EG   +P
Sbjct: 824  DTAVKTAETGYMQRRLMKALEDLSIQYDGSVRNSSMEVVQFAFGEDQIDPVMSEGD--DP 881

Query: 791  LNFDRLLMKVKAT-----------CPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLN 839
            +N +R+ ++ K+            C    + + S   +   + K      +   ++ F+ 
Sbjct: 882  INLERVFLQTKSKFLRSLNSGQGPCLFQLEEWDSIDNLKRSIPKGYPV--ERIVNKRFIE 939

Query: 840  SLRKFFEGQQ-DKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYR 898
            +L  F E ++ DK      F      +D ++I        S I++K +++ I        
Sbjct: 940  TLLGFIESKRGDKFPLNGTFYSYFSCNDFAKIF------FSAISQKMIDLII-------- 985

Query: 899  VKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTP 958
                E GT +GAI  QSIGEPGTQMTLKTFHFAGVASMNIT GVPR+KEIIN    ISTP
Sbjct: 986  ----EPGTTVGAIAGQSIGEPGTQMTLKTFHFAGVASMNITLGVPRLKEIINAVCNISTP 1041

Query: 959  IITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLC 1018
            II AEL   ++   A V+KGRI+K  L  +   I  V+      + I +D+E++  + L 
Sbjct: 1042 IINAELSDPNDLFRAEVIKGRIDKISLKDICCLITEVIGKDEIFLDITIDLESL--SRLK 1099

Query: 1019 INADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKG 1078
            +N DI K  I ++  I       +V+    L I       + +F L  +K  L    + G
Sbjct: 1100 LNLDIYK--IEKSLSI---HDQTEVIGENSLRIHVKKINDQSYFNLQKIKKKLLGTKICG 1154

Query: 1079 IKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQ 1138
               V RV+I            N  +  Y L++EG GL  V+  +GI    T SN + EV+
Sbjct: 1155 APQVSRVII------------NSNRGHYSLVIEGRGLLNVINTDGIKSSTTTSNSVTEVE 1202

Query: 1139 QTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSV 1198
            + LGIEAAR  II EI  T+  HG+ ID RH+MLLAD MT+RGEV GITRFGI KM +S 
Sbjct: 1203 EVLGIEAARAQIIHEIEYTISNHGIKIDPRHIMLLADTMTYRGEVFGITRFGISKMSRST 1262

Query: 1199 LMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            LMLASFE+T+D+LF A+V  + D I GVSE II+GIP+ +GTG + +
Sbjct: 1263 LMLASFEQTSDYLFEAAVQSKSDEICGVSESIILGIPICIGTGSMDL 1309


>gi|66818062|ref|XP_642724.1| RNA polymerase III, largest subunit [Dictyostelium discoideum AX4]
 gi|74860514|sp|Q86AQ5.1|RPC1_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc1;
           Short=RNA polymerase III subunit C1; AltName:
           Full=DNA-directed RNA polymerase III subunit A
 gi|60470813|gb|EAL68785.1| RNA polymerase III, largest subunit [Dictyostelium discoideum AX4]
          Length = 1450

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/858 (52%), Positives = 599/858 (69%), Gaps = 28/858 (3%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK-VT 59
           MRN KM+ L++  L+K I  +C     K  +C +CG  NGM+KK+ A   IIH++ K  T
Sbjct: 127 MRNKKMDNLQRKSLLKKIFLECR----KTKECLKCGSTNGMIKKSGA-FKIIHEKYKGKT 181

Query: 60  ESLQEFAS----AITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RP 112
           ESLQ++ +    AI +  E K+ +  A   LNP+  L LFK+++  D E++ +     RP
Sbjct: 182 ESLQDYYALYDDAIKYNPEMKSHIKKAQDDLNPLVALNLFKKISYQDIEIMNMDPVIGRP 241

Query: 113 EKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFKSL 171
           E+LI+T + VPP++IRPSV MDG S +NE+D+T +L  I+  N  ++  +  A  +   +
Sbjct: 242 ERLILTYMLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEILHINEHIRSNVDRAEMS-AIM 300

Query: 172 AGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRT 231
             W+ LQ   A YINSDV G+P  M+  + + G  QRLKGK GRFRGNLSGKRV+++GRT
Sbjct: 301 EDWDYLQASCAIYINSDVPGLPLQMKPTKAVRGLSQRLKGKTGRFRGNLSGKRVDFSGRT 360

Query: 232 VISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGT 291
           VISPDPNL I EVA+P  +A  +TYPERV+D+NIE+L++ + NGPD++PGA  I Y DG 
Sbjct: 361 VISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPGANYIIYADGV 420

Query: 292 ARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRF 351
            + L    R + A ELK G IV+RH+ DGD++LFNRQPSLH++SIM H+AR+MPWRTLRF
Sbjct: 421 KKWLKFGNREKFAAELKIGDIVERHIIDGDIMLFNRQPSLHKLSIMSHKARVMPWRTLRF 480

Query: 352 NESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTS 411
           NE VC PYNADFDGDEMN+H+PQTEEAR EA +LMGV NNL TP+NGE LVA+TQDFLT+
Sbjct: 481 NECVCTPYNADFDGDEMNIHLPQTEEARAEATILMGVTNNLITPRNGEPLVAATQDFLTA 540

Query: 412 SFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANM 471
           S+LI+R+D FY+R  F+LMC +  D  + +DLP PAILKPVELWTGKQ+F VL+RP    
Sbjct: 541 SYLISRRDAFYERYRFALMCTHFADANEHIDLPPPAILKPVELWTGKQIFEVLLRPSVKS 600

Query: 472 RVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNK 531
            V  N   + +TYS  L             MCP DG+VYFRNSEL+ G + K+ +G GNK
Sbjct: 601 HVLCNFETRSRTYSKNLY------------MCPKDGYVYFRNSELMCGSIDKSIIGGGNK 648

Query: 532 DGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISEN 591
           + L+ +L+RD+     + CM RLAKL AR++G+ GFSIGI D++P ++L  KK ++I   
Sbjct: 649 NSLFHILMRDFSPTIAANCMTRLAKLCARFLGDQGFSIGIPDIKPAEDLDRKKREIIETA 708

Query: 592 YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIM 651
           Y+ C V +K+Y  G LQL  GC   QT EA +   L++IR+D GK C+  LP  NSPLIM
Sbjct: 709 YKKCAVFLKDYESGSLQLSSGCSMEQTFEAKMNQTLSQIRDDCGKLCVNDLPNYNSPLIM 768

Query: 652 SQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYS 711
             CGSKGS INI+QM+ CVGQQ V G R PNGF +R+ PHF   AK P +KGFV+NSFY+
Sbjct: 769 GLCGSKGSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPHFKHFAKNPKSKGFVSNSFYT 828

Query: 712 GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQF 771
           G+  TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+KALEDLS  YD +VR++ G IVQF
Sbjct: 829 GMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRDSIGGIVQF 888

Query: 772 LYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKE 831
           +YGDDG+DPA ME K   P++F R +M VK+T     +  + P ++ ++VE  + +   E
Sbjct: 889 IYGDDGLDPAGMEAKD-RPVDFLRAMMSVKSTRQCRNEPEMKPFEIRKLVESIIDSSKFE 947

Query: 832 SCSEAFLNSLRKFFEGQQ 849
           +C++ F N +R FF G +
Sbjct: 948 ACTDLFKNEIRVFFNGNE 965



 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/378 (56%), Positives = 262/378 (69%), Gaps = 10/378 (2%)

Query: 872  EEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 931
            E V ++   IT+ Q+E+F+  C  +Y   R+E GTA+GAIGAQSIGEPGTQMTLKTFHFA
Sbjct: 1067 EHVVNQIHRITKTQIELFLDICLDKYSRARIEPGTAVGAIGAQSIGEPGTQMTLKTFHFA 1126

Query: 932  GVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKS 991
            GVASMN+T GVPRIKEIIN AK ISTPIITA L C+ +  +AR+V GRIEKT LG VA  
Sbjct: 1127 GVASMNVTLGVPRIKEIINAAKNISTPIITASLNCDYDIRSARIVAGRIEKTTLGHVATH 1186

Query: 992  IKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEI 1051
            IK V+      + I +D   +    L IN+  + +SI  T  +KLK + I      KL I
Sbjct: 1187 IKEVVKRAGCYLSIKIDKNFVDSLQLEINSKTISQSIASTKGLKLKPEQITTNGDYKLRI 1246

Query: 1052 FPPVD-KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLV 1110
             PP + +    + L  LKN LP VIVKGI TV RVVI+       KV E  E  +Y+LLV
Sbjct: 1247 VPPANIREGSLYYLQFLKNNLPAVIVKGIPTVNRVVIS-------KVDEKQE--RYQLLV 1297

Query: 1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
            EG  L+AVM   GI G  T SNHI E + TLGIE AR  I+ EI+  M +HGMSID RH+
Sbjct: 1298 EGYDLRAVMATPGIKGTHTTSNHIMECENTLGIETARNTIMSEIDMIMTSHGMSIDIRHV 1357

Query: 1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
            MLLADLM+F+GE+LGITRFGI KM +SVLMLASFEKT DHLF+A+V+ R D I GVSECI
Sbjct: 1358 MLLADLMSFKGEILGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHHRQDDIVGVSECI 1417

Query: 1231 IMGIPMPLGTGILKIRQR 1248
            IMG+ +PLGTG+ K+ ++
Sbjct: 1418 IMGVVIPLGTGLFKLLRK 1435


>gi|301109379|ref|XP_002903770.1| DNA-directed RNA polymerase III largest subunit [Phytophthora
           infestans T30-4]
 gi|262096773|gb|EEY54825.1| DNA-directed RNA polymerase III largest subunit [Phytophthora
           infestans T30-4]
          Length = 1534

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/861 (54%), Positives = 610/861 (70%), Gaps = 39/861 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAV-LGIIHD--RSK 57
           MR+PK + LR   L K I    +T+  K VKCP C  ING V+K  +  L ++H+  R+K
Sbjct: 143 MRDPKADVLRLVGLRKKI----ATLCKKTVKCPHCDAINGTVRKITSTTLKLVHEKYRAK 198

Query: 58  VTESLQ-----EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
            T  L+     +FA A  +  E  A +  A   L+P+ V  LFK + D DCE+L++    
Sbjct: 199 ATHDLRNVFVAQFAEAQANNPEIGAHLPKAQEDLSPLVVQQLFKEIPDQDCELLWVDADG 258

Query: 111 -RPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAF 168
            RPEKL++ ++ VPP+ IRPSV MDG + SNE+DIT +L+ I+Q N +L+  L +  S  
Sbjct: 259 GRPEKLLLNSVLVPPVCIRPSVAMDGGTGSNEDDITVKLQEIVQVNFALRAALQKGASLK 318

Query: 169 KSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYT 228
             +  W+ LQ++VAQ +N D  G+         + G  QRLKGKQGRFRGNLSGKRV+++
Sbjct: 319 MVMEDWDFLQIQVAQLMNGDTPGLVKPPGAKTGIRGLCQRLKGKQGRFRGNLSGKRVDFS 378

Query: 229 GRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYP 288
           GRTVISPDPNL+I +V +P  +A+ +TYPE+V+ +NIEKLR+C+ NGP  +PGA +IR  
Sbjct: 379 GRTVISPDPNLRIDQVGVPEHVAKTMTYPEKVTRYNIEKLRKCVVNGPHVHPGANVIRIE 438

Query: 289 DG--TARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW 346
               T  +LYG  R  LA ELK G IV+RH+EDGD+VLFNRQPSLH+MSIM HR ++MPW
Sbjct: 439 GQKFTKNLLYGD-RASLADELKIGDIVERHMEDGDIVLFNRQPSLHKMSIMSHRVKVMPW 497

Query: 347 RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQ 406
           RT RFNE VC+PYNADFDGDEMNMH+PQTEEARTEA+ LMGV+ NL TP+NGE LVA+TQ
Sbjct: 498 RTFRFNECVCSPYNADFDGDEMNMHLPQTEEARTEAITLMGVEQNLITPRNGEPLVAATQ 557

Query: 407 DFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIR 466
           DFLT+S+L+T+K+ F++R  F  +   M D  + ++LP PAI+ PV LWTGKQ+ S+L++
Sbjct: 558 DFLTASYLLTQKNIFFNREQFCQVISIMSDANEHIELPPPAIVLPVRLWTGKQVISLLVK 617

Query: 467 PHANMRVYVNLTVKEKTY-SNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKAT 525
           P+A  +V  NL +KE+ Y SNK              MC  DG+V FRNSELI G LGK T
Sbjct: 618 PNAQTKVLANLELKERNYTSNKF-------------MCWKDGYVCFRNSELICGNLGKKT 664

Query: 526 LGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH-GFSIGIDDVQPKKELSDKK 584
           LG+G+K GL+ VL+RD+G+H  + CMNRLAKL ARW+GN  GFSIGIDDV P +ELS +K
Sbjct: 665 LGDGSKQGLFYVLIRDHGSHEAARCMNRLAKLCARWLGNFKGFSIGIDDVTPSEELSKEK 724

Query: 585 GKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW 644
            KL+   Y+  N  I+EY  GKL LKPGC+A Q+LE+ +  +L ++RE AG  CM +LP+
Sbjct: 725 QKLLQAGYDAANNSIEEYRRGKLSLKPGCNAIQSLESELNGLLGKLRETAGAECMRTLPF 784

Query: 645 RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 704
            N+P IM++CGSKGS +NISQM+ACVGQQSVGG+R P GF++R+LPHF   A   +AKGF
Sbjct: 785 HNNPRIMAECGSKGSALNISQMMACVGQQSVGGKRVPEGFVNRTLPHFLPHALHASAKGF 844

Query: 705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
           VANSFYSGL+ATEFFFHTMGGREGLVDTAVKTA+TGYM+RRL+KALEDLS QYD +VRN+
Sbjct: 845 VANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSCQYDQTVRNS 904

Query: 765 GGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQ 824
            G +VQF YGDDG++PA MEG    P++F RLL  ++ T P      L P ++  +  KQ
Sbjct: 905 EGSVVQFTYGDDGLNPAYMEGDD-RPVDFHRLLEHIRNTLPDHESPALLPFELRRL-GKQ 962

Query: 825 LAAYGKESCSEAFLNSLRKFF 845
           +    + S  +A L + RKF 
Sbjct: 963 VV---QRSQFQAILPTGRKFL 980



 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/426 (51%), Positives = 280/426 (65%), Gaps = 25/426 (5%)

Query: 842  RKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKR 901
            R  F+  + + +   +  ED G  +K +    ++H    IT KQ+E  ++    +Y    
Sbjct: 1102 RTRFKTAKSRAEWTKRAAED-GTKEKEEAAWLLSHNVCRITTKQVEKLLEISLYKYNRAG 1160

Query: 902  VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIIT 961
            +E G A+GA+GAQSI EPGTQMTLKTFHFAGVASMN+T GVPR+KEIIN +K ISTPIIT
Sbjct: 1161 MEPGEAVGAVGAQSISEPGTQMTLKTFHFAGVASMNVTLGVPRLKEIINASKIISTPIIT 1220

Query: 962  AELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINA 1021
            A L C  +E +AR+VKGRIEKT LG++A  IK V     A + + LD+  I+  HL I A
Sbjct: 1221 AALVCKTDERSARIVKGRIEKTTLGEIAVHIKEVFARDQAYLSVKLDLTAIEQLHLNITA 1280

Query: 1022 DIVKESIVQTPKIK-------LKQQHIKVLDFR---KLEIFPPV-------DKSKIHFEL 1064
              V+ SI+    +        LK+QH+ +L+ R   KL +  P        +    +F L
Sbjct: 1281 RSVRNSILNAVGVGPRAVLRLLKEQHV-LLNARCPDKLRLLAPPNYKGAKGETRGAYFAL 1339

Query: 1065 YSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGI 1124
             +LK  LP VIV+GI TV R VI  +E     V+++   K   LLVEG GL  VMG  G+
Sbjct: 1340 QALKAELPGVIVQGIPTVNRAVINYEE-----VQDSSAAKSLHLLVEGYGLAEVMGIPGV 1394

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
            DG  T SNHI EV++TLGIEAAR  I  E+N  M A+G+ ID+RH+MLL+D+MTF+GEVL
Sbjct: 1395 DGLHTTSNHIIEVEKTLGIEAARELISSEVNYIMSAYGIGIDRRHLMLLSDIMTFKGEVL 1454

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
            GITRFGI KM +SVLMLASFEKT DHLF+A+V+ R D I GVSECIIMGIP+PLGTGI K
Sbjct: 1455 GITRFGIAKMKESVLMLASFEKTTDHLFDAAVHSRTDAIVGVSECIIMGIPIPLGTGIFK 1514

Query: 1245 -IRQRD 1249
             +RQ D
Sbjct: 1515 LLRQVD 1520


>gi|398409068|ref|XP_003855999.1| DNA-directed RNA polymerase III subunit RPO31 [Zymoseptoria tritici
            IPO323]
 gi|339475884|gb|EGP90975.1| hypothetical protein MYCGRDRAFT_83445 [Zymoseptoria tritici IPO323]
          Length = 1435

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1054 (46%), Positives = 677/1054 (64%), Gaps = 70/1054 (6%)

Query: 243  EVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-RYPDGTARVLY----- 296
            +VA+P+R+A  +TYPERV+ HN EKL+ C++ G   +PGA  I +  DG   VL      
Sbjct: 334  QVAVPMRVAVNMTYPERVTKHNFEKLKACVRRGDKVHPGANFIVKGRDGRRVVLRMVGLK 393

Query: 297  GKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 356
            G  + ++A +L+ G  V+RHLEDGD+VLFNRQPSLH++SI+ HRA+I PWRT R NE VC
Sbjct: 394  GDLK-KVADQLEIGDTVERHLEDGDIVLFNRQPSLHKLSILSHRAKIRPWRTFRLNECVC 452

Query: 357  NPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
            NPYNADFDGDEMN+HVPQTEEARTEA  LMGV++NL TPKNG  ++A+ QDF+T +FLI+
Sbjct: 453  NPYNADFDGDEMNLHVPQTEEARTEATELMGVKHNLATPKNGTPIIAAIQDFITGAFLIS 512

Query: 417  RKDTFYDRAAFSLMCCYMGDGMD----------RVDLPTPAILKPVELWTGKQLFSVLIR 466
            RKD F++R  F+    +M DG+            +++P PAI KP  LWTGKQ++ VL++
Sbjct: 513  RKDQFFNRRQFNQAVTFMYDGLQVKDPLTGETHNIEIPAPAIWKPQTLWTGKQIWDVLMK 572

Query: 467  PHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATL 526
            PH +  V VNL  K K+++    + +GD    I+ M  +D ++  RNS  + G   KAT+
Sbjct: 573  PHRHYPVNVNLEAKLKSFAPP--KRKGD----IDDMVDSDSYLVIRNSVTMCGGFDKATV 626

Query: 527  GNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGK 586
            G+G K  ++ V++RD+G    +  M RLAKLSARW+G  GFSIGI DV P  +L+ +K +
Sbjct: 627  GDGKKTSVFYVIMRDFGVDYAAAAMTRLAKLSARWLGEQGFSIGISDVYPSDKLNLRKKE 686

Query: 587  LISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRN 646
            L+   Y  C+  I ++ +G+L+   GCD  QT+E +++ IL+ +R+  G AC   L   N
Sbjct: 687  LVDAAYRQCDEIIDKFKKGQLERSAGCDEEQTMEILMSGILSAVRQQCGDACFAELSKFN 746

Query: 647  SPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVA 706
            +PL M++CGSKGS IN+SQMVA VGQQ +GG+R  +GF DR+LPHFP+ +++P AKGFV 
Sbjct: 747  APLTMAKCGSKGSNINVSQMVAAVGQQIIGGKRVLDGFQDRTLPHFPKASRDPLAKGFVV 806

Query: 707  NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGG 766
            +SF+SGLS TEF FH M GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD +VRN+  
Sbjct: 807  DSFFSGLSPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDLTVRNSSS 866

Query: 767  CIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQL- 825
             +VQ  +GDDG+DP +MEG + +P+NFDR  M    +     +R L+  ++ E+V + L 
Sbjct: 867  GVVQMKFGDDGLDPVDMEGNA-KPVNFDRTWMHAITSTWDNSERGLTQNEIEEMVHETLD 925

Query: 826  --AAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEV------THK 877
               A       +      +       D+L+    F++D+     + I + V       H+
Sbjct: 926  KERAKLVRITDDGLPLPYKDATPKSTDQLEYSRTFLDDV----TNYIFKHVRKLVSSQHR 981

Query: 878  TSG------ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 931
              G      +++  LE F+  C  ++   +VEAG A+GA+GAQSIGEPGTQMTLKTFHFA
Sbjct: 982  HRGSDDVFKLSQSALECFLYLCLRKFEKSKVEAGHAVGAVGAQSIGEPGTQMTLKTFHFA 1041

Query: 932  GVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKS 991
            GVA M+ITQGVPRIKEIIN +K ISTP+IT  L+    E A R  K  IEKT LG +   
Sbjct: 1042 GVAGMSITQGVPRIKEIINASKSISTPVITCALDSPYEEMAGRFAKALIEKTYLGDIVDY 1101

Query: 992  IKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIK-------LKQQHIKVL 1044
            I+ V  +    I + ++ E +++  L I    + E+I ++   K         + HI+V 
Sbjct: 1102 IEDVWHAHGCYINMRVNWEQVENLGLRITMWHITEAINRSKGFKSMGVSASASESHIRVR 1161

Query: 1045 ----DFRKLEI--------FPPVDKSKIHF-ELYSLKNVLPMVIVKGIKTVERVVIAEKE 1091
                D  KL          F   D S++ F ++++LK  LP V+VKG     R ++ + +
Sbjct: 1162 LTLPDSSKLRKAAATKHLRFSDNDDSEVLFMQIHTLKRKLPAVVVKGYPDAARAIMKKDD 1221

Query: 1092 KEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICII 1151
            K     +E        +LVEG GL+A M  +G+DG +TKSN++ E +  LGIEAAR  II
Sbjct: 1222 KADASGRE-----PISVLVEGYGLKACMTTDGVDGYRTKSNNVMECKDVLGIEAARKTII 1276

Query: 1152 DEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHL 1211
            DEI+  M   GM ID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LASFEKT DHL
Sbjct: 1277 DEISAVMG--GMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTPDHL 1334

Query: 1212 FNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            F A+   + D IEGVSECIIMG  M +GTG +K+
Sbjct: 1335 FEAAAKMKKDDIEGVSECIIMGQVMGVGTGAMKV 1368



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 95/201 (47%), Gaps = 25/201 (12%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-----------VAVL 49
           +R P ++ LRK  L K I  +C     K   CP C   NG V+K             A+ 
Sbjct: 142 LRRPGLDGLRKEVLTKKISAECR----KVKVCPHCSAFNGPVRKVPGHPVKMFHNKYAIY 197

Query: 50  GIIHDRSKVTESLQE-----FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
              + +SKV  +  +     F  AI    E +  +  A   L P+ VL + K++ + D E
Sbjct: 198 TNSNAKSKVKPAHMQAFEATFEEAIKANPEIERHMKRAADDLTPLRVLNILKKVPNADVE 257

Query: 105 VLYLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQE 160
           +L +      RPE +I T+I  PP+AIRPSV  + + S E+DIT +L  IIQ N+ +   
Sbjct: 258 LLGMDPHSGGRPEYMIWTSIPAPPVAIRPSVAQE-TASTEDDITNKLGDIIQINSLMIAT 316

Query: 161 LVEANSAFKSLAGWETLQVEV 181
           L       K +  WE LQV V
Sbjct: 317 LRAGQQLSKVMDMWEFLQVAV 337


>gi|348676845|gb|EGZ16662.1| hypothetical protein PHYSODRAFT_500633 [Phytophthora sojae]
          Length = 1532

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/820 (55%), Positives = 593/820 (72%), Gaps = 33/820 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAV-LGIIHD--RSK 57
           MR+P+ + LR   L K I   C     K +KCP C  ING V+K  +  L ++H+  R+K
Sbjct: 139 MRDPRADVLRLVGLRKKIAALCK----KTIKCPYCDAINGSVRKITSTTLKLVHEKYRAK 194

Query: 58  VTESLQ-----EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
            T  L+     +FA A  +  E  A +  A   L+P+ VL LFK + D DCE+L++    
Sbjct: 195 ATHDLRNVFVAQFAEAQANNPEIGAHLPKAQEDLSPLVVLQLFKEIPDQDCELLWVDADN 254

Query: 111 -RPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAF 168
            RPE+LI+ ++ VPP+ IRPSV MDG S SNE+DIT +L+ I+Q N +L+  L +  S  
Sbjct: 255 GRPERLILNSVLVPPVCIRPSVAMDGGSGSNEDDITVKLQEIVQVNFALRAALQKGASLK 314

Query: 169 KSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYT 228
             +  W+ LQ++VAQ +N D  G+         + G  QRLKGKQGRFRGNLSGKRV+++
Sbjct: 315 MVMEDWDFLQIQVAQLMNGDTPGLVKPPGAKSGIRGLCQRLKGKQGRFRGNLSGKRVDFS 374

Query: 229 GRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYP 288
           GRTVISPDPNL+I +V +P  +A+ +TYPE+V+ +NIEKLR+C+ NGP+ +PGA +IR  
Sbjct: 375 GRTVISPDPNLRIDQVGVPEHVAKTMTYPEKVTRYNIEKLRKCVVNGPNVHPGANIIRIE 434

Query: 289 DG--TARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW 346
               T  ++YG  R  LA ELK G IV+RH+EDGD+VLFNRQPSLH+MSIM HR ++MPW
Sbjct: 435 GQKFTKNLMYGD-RASLADELKIGDIVERHMEDGDIVLFNRQPSLHKMSIMSHRVKVMPW 493

Query: 347 RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQ 406
           RT RFNE VC+PYNADFDGDEMNMH+PQTEEARTEA+ LMGV+ NL TP+NGE LVA+TQ
Sbjct: 494 RTFRFNECVCSPYNADFDGDEMNMHLPQTEEARTEAITLMGVEQNLITPRNGEPLVAATQ 553

Query: 407 DFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIR 466
           DFLT+S+L+T+K+ F++R  F  +   M D  + ++LP PAI+ PV LWTGKQ+ S+L++
Sbjct: 554 DFLTASYLLTQKNIFFNREQFCQVISIMSDANEHIELPLPAIVLPVRLWTGKQVISLLVK 613

Query: 467 PHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATL 526
           P++  +V  NL +KE+ Y+N             + MC  DG+V FRNSELI G LGK TL
Sbjct: 614 PNSQTKVMANLELKERNYTNN------------KYMCWKDGYVCFRNSELICGNLGKKTL 661

Query: 527 GNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH-GFSIGIDDVQPKKELSDKKG 585
           G+G+K GL+ VL+RD+G+H  + CMNRLAKL ARW+GN  GFSIGIDDV P +EL+ +K 
Sbjct: 662 GDGSKQGLFYVLIRDHGSHEAARCMNRLAKLCARWLGNFKGFSIGIDDVTPSEELAKEKE 721

Query: 586 KLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR 645
           KL+   Y+  N  I+EY  GKL LKPGC+A Q+LE+ +  +L ++RE AG  CM +LP+ 
Sbjct: 722 KLLQAGYDAANNSIEEYRRGKLSLKPGCNAIQSLESELNGLLGKLRETAGAECMRTLPFH 781

Query: 646 NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFV 705
           N+P IM++CGSKGS +NISQM+ACVGQQSVGG+R P GF++R+LPHF   A   +AKGFV
Sbjct: 782 NNPRIMAECGSKGSALNISQMMACVGQQSVGGKRVPEGFVNRTLPHFLPHALHASAKGFV 841

Query: 706 ANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAG 765
           ANSFYSGL+ATEFFFHTMGGREGLVDTAVKTA+TGYM+RRL+KALEDLS QYD +VRN+ 
Sbjct: 842 ANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSCQYDQTVRNSE 901

Query: 766 GCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCP 805
           G +VQF +GDDG++PA MEG    P++F RLL  ++ T P
Sbjct: 902 GSVVQFTFGDDGLNPAYMEGDD-RPVDFHRLLEHIRNTLP 940



 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/400 (53%), Positives = 267/400 (66%), Gaps = 23/400 (5%)

Query: 863  GWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQ 922
            G  +K +    ++H    IT KQ+E  ++    +Y    +E G A+GA+GAQSI EPGTQ
Sbjct: 1119 GTAEKEEAAWLLSHNVCRITAKQVEKLLEVSLYKYNRAGMEPGEAVGAVGAQSISEPGTQ 1178

Query: 923  MTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEK 982
            MTLKTFHFAGVASMN+T GVPR+KEIIN +K ISTPIITA L C  +E +AR+VKGRIEK
Sbjct: 1179 MTLKTFHFAGVASMNVTLGVPRLKEIINASKVISTPIITAALVCKTDERSARIVKGRIEK 1238

Query: 983  TLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIK------- 1035
            T LG++A  IK V     A + + LD+  I+  HL I A  V+ SI+    +        
Sbjct: 1239 TTLGEIAVHIKEVFARDQAYLSVKLDLTAIEQLHLNITARSVRNSILNAVGVGPRGALRL 1298

Query: 1036 LKQQHIKVLDFR---KLEIFPPV-------DKSKIHFELYSLKNVLPMVIVKGIKTVERV 1085
            LK+QH+ +L+ R   KL +  P        D    +F L +LK  LP VIV+GI TV R 
Sbjct: 1299 LKEQHV-LLNARCPDKLRLLAPPNYKGAKGDSRGAYFALQALKAELPGVIVQGIPTVNRA 1357

Query: 1086 VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
            VI  +E     V++    K   LLVEG GL  VMG  G+DG  T SNHI EV++TLGIEA
Sbjct: 1358 VINYEE-----VQDASATKSLHLLVEGYGLAEVMGIPGVDGLHTTSNHIIEVEKTLGIEA 1412

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
            AR  I  E+N  M A+G+ ID+RH+MLL+D+MTF+GEVLGITRFGI KM +SVLMLASFE
Sbjct: 1413 ARELISSEVNYIMSAYGIGIDRRHLMLLSDIMTFKGEVLGITRFGIAKMKESVLMLASFE 1472

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            KT DHLF+A+V+ R D I GVSECIIMGIP+PLGTGI K+
Sbjct: 1473 KTTDHLFDAAVHSRTDAIVGVSECIIMGIPIPLGTGIFKL 1512


>gi|336466341|gb|EGO54506.1| DNA-directed RNA polymerase III largest subunit [Neurospora
            tetrasperma FGSC 2508]
 gi|350286795|gb|EGZ68042.1| DNA-directed RNA polymerase III largest subunit [Neurospora
            tetrasperma FGSC 2509]
          Length = 1475

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/1361 (39%), Positives = 776/1361 (57%), Gaps = 196/1361 (14%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR-SKVT 59
            +R P ++ L+++ ++K I  +C     K   CP CG   G+++K ++V+ + HD+ S   
Sbjct: 135  LRAPGIDNLKRSAILKKINDECR----KQKTCPYCGDTQGVIRK-LSVMKLTHDKFSHFN 189

Query: 60   ESLQE--------------FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
            +S  +              F  A T T + +     A   ++P+ VL LFK++T  DCE+
Sbjct: 190  KSTAQKKVPPVAKAAFDSSFIQAKTFTPDLEKHSKKAMDDMDPLKVLKLFKKITAEDCEL 249

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L+    RPE  +   +  PPI IRPSV  + + SNE+DIT +L  II     L++ L+
Sbjct: 250  LGLNPSEGRPEMFLWQYLPAPPICIRPSVQQEAA-SNEDDITSKLSEIILYAGHLRESLL 308

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            +  +    +  WE +Q++V  Y+    R         R     +++L+      +  ++G
Sbjct: 309  KGAALNTIMEQWEFIQLQVGMYVAVPERVAKNLTYPERVNRNNIEKLR------KCVMNG 362

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
             +V    + VI  D  +K             L +     D +I + R            A
Sbjct: 363  PKVWPGAQGVIKRDGGMKFN-----------LNF----GDESIREER------------A 395

Query: 283  RMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRAR 342
            R +++ D                      +V+RHLEDGD+VLFNRQPSLH++SIM HRA+
Sbjct: 396  RELKFGD----------------------VVERHLEDGDIVLFNRQPSLHKLSIMSHRAK 433

Query: 343  IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILV 402
            + PWRT R NE VC PYNADFDGDEMN+H+PQTEEAR EA+ LMGVQNNL TPKNGE ++
Sbjct: 434  VRPWRTFRLNECVCTPYNADFDGDEMNLHLPQTEEARAEAINLMGVQNNLITPKNGEPII 493

Query: 403  ASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFS 462
            A+TQDF+T+++L++ KD F DR  F+ +C  M  G   +DLP P I+KPVELWTGKQ+F+
Sbjct: 494  AATQDFITAAYLLSSKDLFLDRKTFTYICTQMLLGETHLDLPPPTIIKPVELWTGKQIFN 553

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            VL+RP+    V VNL  K K Y  K     G+    +  M  +D ++  RNSE++ G++ 
Sbjct: 554  VLMRPNKQSPVLVNLEAKNKVYKAK----PGE----LPDMDIDDCYLVVRNSEVMCGRMD 605

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K+T+G G K+ ++ V+LRD+G    +  MNRLAKL AR +   GFSIG+ DV P K+L++
Sbjct: 606  KSTVGGGKKNSVFYVILRDWGPEHAAQAMNRLAKLCARTLTLRGFSIGVGDVYPSKDLTE 665

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K KL+ + Y +C+  I ++  G+L+  PGC+  +TLE  I+ IL+++R  AG  C+G L
Sbjct: 666  HKAKLVQDAYALCDDLIAQFKSGRLEKAPGCNMEETLENKISGILSKVRSQAGDYCVGHL 725

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPLIM++ GSKGS IN++QMVA VGQQ +GG+R  +GF DR+L HF + A++P +K
Sbjct: 726  SRNNSPLIMAKSGSKGSDINVAQMVALVGQQIIGGKRVADGFQDRTLFHFHKNARQPPSK 785

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFV NSFY+GL  TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD++VR
Sbjct: 786  GFVRNSFYTGLVPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVR 845

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVS---- 818
             + G IVQF YG D +DPA+MEG + +P++F+R     ++       R L P ++S    
Sbjct: 846  TSEGNIVQFQYGADRLDPADMEG-NAKPVDFERSWNHAESLTMNHNDRSLLPAEISAMCK 904

Query: 819  -------------EIVEKQLAAYGKESCSEA-----------------FLNSLRKFFEGQ 848
                          +V  +L  Y  ++ +E+                 +LN+++   + +
Sbjct: 905  EILDERRKWYVRKHLVTGELLHYEDKTIAESDDHDVFIAIDEHEGARVYLNTIQAEMDKR 964

Query: 849  QDKLDKKIKFV---------------EDIGWDDKS-------------QILEEVTHKTSG 880
              KL K  K                 E   W+ K              +I +    + + 
Sbjct: 965  ALKLAKARKLAGLDPCLPQDNADLLKEFAAWEKKQNGGDIKMLDPEEEEIQQAHVDRVAK 1024

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++E  L  F+  C S++   +VE G A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQ
Sbjct: 1025 VSEATLRKFMNLCLSKFDKAKVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQ 1084

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRL 1000
            GVPRIKEII  +K ISTP+I+ ELE N +  AAR+VKG+IEKT +  V   ++ V    +
Sbjct: 1085 GVPRIKEIIGASKLISTPVISCELENNRDIKAARIVKGKIEKTYISDVITYVEDVWLPDV 1144

Query: 1001 ASIVIALDMETIQDAHLCINADIVKESI---------VQTPKIKLKQQH-IKVL---DFR 1047
            A IV+ +DM+ + D  L I    +  +I         V+   +K+   + I+V+   D++
Sbjct: 1145 AKIVLKIDMQALSDMQLGIGLREIMVAIVKAKKLKLKVEMDDLKIGPDNTIEVIVSNDWK 1204

Query: 1048 KLE------------------IFPPVDKSKIHFELYS--LKNVLPMVIVKGIKTVERVVI 1087
             L                   +    D++   F+L    LK +LP V + G     R +I
Sbjct: 1205 DLTAQKKAARVRAAAIEKGQLLLTTSDETAADFQLRVNFLKRMLPAVPISGYPEAFRAII 1264

Query: 1088 AEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAAR 1147
                       ++ E  ++++LVEG GL+A M  EG+ G K  SN I E +  LGIEAAR
Sbjct: 1265 -----------QSSESNEHKVLVEGYGLRACMTTEGVIGTKCISNSIMECRDVLGIEAAR 1313

Query: 1148 ICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKT 1207
              I  EI   M    M ID RHM LLAD+MT++GE+LGITR G+ KM  SVL LASFE+T
Sbjct: 1314 TTIAKEIGSVMG--DMGIDPRHMDLLADVMTYKGEILGITRHGLAKMRDSVLQLASFERT 1371

Query: 1208 ADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
             DHLF+A+   + DRI GVSECIIMG  M +GTG  ++ +R
Sbjct: 1372 PDHLFDAAAGMKTDRILGVSECIIMGQTMKIGTGAFQVVRR 1412


>gi|325185155|emb|CCA19646.1| DNAdirected RNA polymerase III largest subunit puta [Albugo laibachii
            Nc14]
 gi|325188545|emb|CCA23078.1| RNA polymerase III putative [Albugo laibachii Nc14]
          Length = 1543

 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/904 (50%), Positives = 627/904 (69%), Gaps = 39/904 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHD--RSK 57
            +R+P+ +ALR    +K++ KK +T+  + VKCP C  +NG V+K   + L ++H+  R+K
Sbjct: 148  VRDPRADALR----LKALRKKMATLCKRVVKCPHCQSVNGTVRKVNSSTLKLLHEKFRAK 203

Query: 58   VTESLQ-----EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
              + L+     +F  A T   E +  +  A   L+PV V  LF+R+ D DCE+L++    
Sbjct: 204  SAQDLRNVFVAQFREAQTINPEIRQHLPKAQQDLSPVIVQELFERIPDQDCELLWIDSSL 263

Query: 111  -RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAF 168
             RPEKLI+ ++ VPP+ IRPSV MD G+ SNE+D+T +L+ I+Q N +L   L +  +  
Sbjct: 264  GRPEKLILNSLLVPPVCIRPSVAMDAGAGSNEDDLTIKLQEILQVNFALHAALRQGATLT 323

Query: 169  KSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYT 228
              +  W+ LQ++VAQ ++ D  G+   M   + + G+ QRLKGKQGRFRGNLSGKRV+++
Sbjct: 324  MVMEDWDFLQIQVAQLMHGDTPGLVKPMNAPKSIRGYCQRLKGKQGRFRGNLSGKRVDFS 383

Query: 229  GRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYP 288
            GRTVISPDPNL+I +V +P  +A+ +TYPE+V+ +NI KLR+C+ NGP+ +PGA +I+  
Sbjct: 384  GRTVISPDPNLRIDQVGVPQHVAKTMTYPEKVTRYNINKLRKCVVNGPNVHPGANIIQLQ 443

Query: 289  --DGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW 346
              + T  + YG  R  +A +LK G  V+RH+EDGDVVLFNRQPSLH+MSIM HRA++MPW
Sbjct: 444  GQNLTKNLSYGD-RANMADDLKIGDTVERHMEDGDVVLFNRQPSLHKMSIMAHRAKVMPW 502

Query: 347  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQ 406
            RT RFNE VC+PYNADFDGDEMNMH+PQTEEARTEAL LMGV++N+ TP+NGE LVA+TQ
Sbjct: 503  RTFRFNECVCSPYNADFDGDEMNMHLPQTEEARTEALTLMGVEHNMITPRNGEPLVAATQ 562

Query: 407  DFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIR 466
            DFLT+S+L+T+K+ F++R  F  M   M D ++ +D+P PAI+ P+ LWTGKQ+ S+LI+
Sbjct: 563  DFLTASYLLTQKNIFFNREQFCQMIAIMSDAVEHIDIPEPAIIHPLRLWTGKQVISLLIK 622

Query: 467  PHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATL 526
            P+   ++ VNL +KE+ Y+N               MC  DG+V FRNSEL+ G L K TL
Sbjct: 623  PNDFSKILVNLELKERNYTNNTY------------MCYKDGYVCFRNSELMCGNLCKKTL 670

Query: 527  GNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIG-NHGFSIGIDDVQPKKELSDKKG 585
            G+G+K GL+ VL+RD+G+H  + CMNRLAKL ARW+G + GFSIGIDDV P   L  KK 
Sbjct: 671  GDGSKQGLFYVLIRDHGSHEAARCMNRLAKLCARWLGGSKGFSIGIDDVTPSVHLMGKKN 730

Query: 586  KLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR 645
            +L+   Y   N  I++Y  GKL LKPGC+A Q+LE+ +  +L ++RE AG  CM +LP+ 
Sbjct: 731  ELLQSGYNGANEAIEQYRLGKLPLKPGCNAIQSLESELNGLLGKLRETAGAECMRTLPFH 790

Query: 646  NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFV 705
            N+P IM++CGSKGS +NISQMVACVGQQSV G+R P GF++R+LPHF   A   AAKGFV
Sbjct: 791  NNPRIMAECGSKGSALNISQMVACVGQQSVSGKRVPEGFVNRTLPHFLPHALHAAAKGFV 850

Query: 706  ANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAG 765
            ANSFYSGL+ATEFFFHTMGGREGLVDTAVKTA+TGYM+RRL+KALEDLS QYD +VRN+ 
Sbjct: 851  ANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSCQYDRTVRNSE 910

Query: 766  GCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQL 825
            G +VQF+YGDDG++PA MEG    P++F+RL   +++T P    R L P ++  +V+K +
Sbjct: 911  GAVVQFMYGDDGLNPAFMEGDD-RPVDFNRLYEHIRSTIPDKESRSLLPFEIRLLVKKAM 969

Query: 826  AAYGKESCSEA---FLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
                 +S   A   FL  + +FF     ++ K      ++G D     L     K   + 
Sbjct: 970  LRKEFQSILPAGRKFLIEIEEFFSNLASRIAKT---RTNVGVDSMDHALTPYAAKLERMM 1026

Query: 883  EKQL 886
            E  L
Sbjct: 1027 EANL 1030



 Score =  356 bits (913), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 210/402 (52%), Positives = 272/402 (67%), Gaps = 21/402 (5%)

Query: 874  VTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGV 933
            ++H    IT+ Q+E  ++    +Y    +E G A+GAIGAQSI EPGTQMTLKTFHFAGV
Sbjct: 1141 ISHNVCRITQLQIEKLLEVSLYKYHRACMEPGEAVGAIGAQSISEPGTQMTLKTFHFAGV 1200

Query: 934  ASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIK 993
            ASMN+T GVPR+KEIIN +K ISTPIITA L    +E +AR+VKG+IEKT LG++A  IK
Sbjct: 1201 ASMNVTLGVPRLKEIINASKNISTPIITAALVNKTDERSARIVKGQIEKTTLGEIAIHIK 1260

Query: 994  IVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKI-------KLKQQHIKVLDF 1046
             V     A + + LD   I+  HL I+A  V+ SI++   I        LK+QH+ +L+ 
Sbjct: 1261 EVFARDQAYLSVGLDTHAIKQLHLNISAQTVRNSILKAVGIGPRSILRMLKEQHV-LLNA 1319

Query: 1047 R---KLEIFPPVDKSK-----IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVK 1098
            R   KL I  P ++        +F + +LK  LP VIV+GI  V R VI     E+ K  
Sbjct: 1320 RCPSKLRILAPSNQKTSFTRGAYFTMQALKAELPNVIVQGIPQVNRAVI---NYEEGKTD 1376

Query: 1099 ENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETM 1158
             +G  + + LLVEG GL  VMG  GIDG  T+SNHI EV++TLGIEAAR  I  E++  M
Sbjct: 1377 SHG-VRTHHLLVEGYGLAEVMGVPGIDGLNTRSNHIIEVEKTLGIEAARELISSEVSYIM 1435

Query: 1159 KAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNG 1218
             A+G+ ID+RH+MLL+D+MTF+GEVLGITRFGI KM +SVLMLASFEKT DHLF+A+V+ 
Sbjct: 1436 SAYGIGIDRRHLMLLSDIMTFKGEVLGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHS 1495

Query: 1219 RDDRIEGVSECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAP 1260
            R D I GVSECIIMGIP+P+GTGI K+ +R    P +++  P
Sbjct: 1496 RTDAIVGVSECIIMGIPIPIGTGIFKLLRR-VEKPKIRHHTP 1536


>gi|164426670|ref|XP_956571.2| DNA-directed RNA polymerase III largest subunit [Neurospora crassa
            OR74A]
 gi|157071429|gb|EAA27335.2| DNA-directed RNA polymerase III largest subunit [Neurospora crassa
            OR74A]
          Length = 1474

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/1363 (39%), Positives = 780/1363 (57%), Gaps = 201/1363 (14%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR-SKVT 59
            +R P ++ L+++ ++K I  +C     K   CP CG   G+++K ++V+ + HD+ S   
Sbjct: 135  LRAPGIDNLKRSAILKKINDECR----KQKTCPYCGDTQGVIRK-LSVMKLTHDKFSHFN 189

Query: 60   ESLQE--------------FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
            +S  +              F  A T T + +     A   ++P+ VL LFK++T  DCE+
Sbjct: 190  KSTAQKKVPPVAKAAFDSSFIQAKTFTPDLEKHSKKAMDDMDPLKVLKLFKKITAEDCEL 249

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L+    RPE  +   +  PPI IRPSV  + + SNE+DIT +L  II     L++ L+
Sbjct: 250  LGLNPSEGRPEMFLWQYLPAPPICIRPSVQQEAA-SNEDDITSKLSEIILYAGHLRESLL 308

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRL-KGKQGRFRGN-L 220
            +  +    +  WE +Q++V          V    +VA+ L+ + +R+ +    + R   +
Sbjct: 309  KGAALNTIMEQWEFIQLQVGM--------VAVPERVAKNLT-YPERVNRNNIEKLRKCVM 359

Query: 221  SGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYP 280
            +G +V    + VI  D  +K             L +     D +I + R           
Sbjct: 360  NGPKVWPGAQGVIKRDGGMKFN-----------LNF----GDESIREER----------- 393

Query: 281  GARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
             AR +++ D                      +V+RHLEDGD+VLFNRQPSLH++SIM HR
Sbjct: 394  -ARELKFGD----------------------VVERHLEDGDIVLFNRQPSLHKLSIMSHR 430

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
            A++ PWRT R NE VC PYNADFDGDEMN+H+PQTEEAR EA+ LMGVQNNL TPKNGE 
Sbjct: 431  AKVRPWRTFRLNECVCTPYNADFDGDEMNLHLPQTEEARAEAINLMGVQNNLITPKNGEP 490

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A+TQDF+T+++L++ KD F DR  F+ +C  M  G   +DLP P I+KPVELWTGKQ+
Sbjct: 491  IIAATQDFITAAYLLSSKDLFLDRKTFTYICTQMLLGETHLDLPPPTIIKPVELWTGKQI 550

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            F+VL+RP+    V VNL  K K Y  K     G+    +  M  +D ++  RNSE++ G+
Sbjct: 551  FNVLMRPNKQSPVLVNLEAKNKVYKAK----PGE----LPDMDIDDCYLVVRNSEVMCGR 602

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            + K+T+G G K+ ++ V+LRD+G    +  MNRLAKL AR +   GFSIG+ DV P K+L
Sbjct: 603  MDKSTVGGGKKNSVFYVILRDWGPEHAAQAMNRLAKLCARTLTLRGFSIGVGDVYPSKDL 662

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
            ++ K KL+ + Y +C+  I ++  G+L+  PGC+  +TLE  I+ IL+++R  AG  C+G
Sbjct: 663  TEHKAKLVQDAYALCDDLIAQFKSGRLEKAPGCNMEETLENKISGILSKVRSQAGDYCVG 722

Query: 641  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 700
             L   NSPLIM++ GSKGS IN++QMVA VGQQ +GG+R  +GF DR+L HF + A++P 
Sbjct: 723  HLSRNNSPLIMAKSGSKGSDINVAQMVALVGQQIIGGKRVADGFQDRTLFHFHKNARQPP 782

Query: 701  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 760
            +KGFV NSFY+GL  TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD++
Sbjct: 783  SKGFVRNSFYTGLVPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDT 842

Query: 761  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVS-- 818
            VR + G IVQF YG D +DPA+MEG + +P++F+R     ++       R L P ++S  
Sbjct: 843  VRTSEGNIVQFQYGADRLDPADMEG-NAKPVDFERSWNHAESLTMNHNDRSLLPAEISAM 901

Query: 819  ---------------EIVEKQLAAYGKESCSEA-----------------FLNSLRKFFE 846
                            +V  +L  Y  ++ +E+                 +LN+++   +
Sbjct: 902  CKEILDERRKWYVRKHLVTGELLHYEDKTIAESDDHDVFIAIDEHEGARVYLNTIQAEMD 961

Query: 847  GQQDKLDKKIKFV---------------EDIGWDDK-------------SQILEEVTHKT 878
             +  KL K  K                 E   W+ K              +I +    + 
Sbjct: 962  KRALKLAKARKLAGLDPCLPQDNADLLKEFAAWEKKQNGGDIKMLDPEEEEIQQAHVDRV 1021

Query: 879  SGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNI 938
            + ++E  L  F+  C S++   +VE G A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+I
Sbjct: 1022 AKVSEATLRKFMNLCLSKFDKAKVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSI 1081

Query: 939  TQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            TQGVPRIKEII  +K ISTP+I+ ELE N +  AAR+VKG+IEKT +  V   ++ V   
Sbjct: 1082 TQGVPRIKEIIGASKLISTPVISCELENNRDIKAARIVKGKIEKTYISDVITYVEDVWLP 1141

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESI---------VQTPKIKLKQQH-IKVL---D 1045
             +A IV+ +DM+ + D  L I    +  +I         V+   +K+   + I+V+   D
Sbjct: 1142 DVAKIVLKIDMQALSDMQLGIGLREIMVAIVKAKKLKLKVEMDDLKIGPDNTIEVIVSND 1201

Query: 1046 FRKLE------------------IFPPVDKSKIHFELYS--LKNVLPMVIVKGIKTVERV 1085
            ++ L                   +    D++   F+L    LK +LP V + G     R 
Sbjct: 1202 WKDLTAQKKAARVRAAAIEKGQLLLTTSDETAADFQLRVNFLKRMLPAVPISGYPEAFRA 1261

Query: 1086 VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
            +I           ++ E  ++++LVEG GL+A M  EG+ G K  SN I E +  LGIEA
Sbjct: 1262 II-----------QSSESNEHKVLVEGYGLRACMTTEGVIGTKCISNSIMECRDVLGIEA 1310

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
            AR  I  EI   M    M ID RHM LLAD+MT++GE+LGITR G+ KM  SVL LASFE
Sbjct: 1311 ARTTIAKEIGSVMG--DMGIDPRHMDLLADVMTYKGEILGITRHGLAKMRDSVLQLASFE 1368

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            +T DHLF+A+   + DRI GVSECIIMG  M +GTG  ++ +R
Sbjct: 1369 RTPDHLFDAAAGMKTDRILGVSECIIMGQTMKIGTGAFQVVRR 1411


>gi|313241408|emb|CBY33677.1| unnamed protein product [Oikopleura dioica]
          Length = 1360

 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1208 (41%), Positives = 721/1208 (59%), Gaps = 102/1208 (8%)

Query: 94   LFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQ-SNENDITERLKR 149
            LF  +   D  +L +   S  P  LI+T I V P  IRPSV  D  Q +NE+D+T  L  
Sbjct: 173  LFDNIPKEDYPLLCMAVDSVHPSDLILTQIPVSPSVIRPSVTSDIRQGTNEDDLTASLMH 232

Query: 150  IIQTNASLQQELVEANSAFKSLAG--------WETLQVEVAQYINSDVRGVPFSMQVA-- 199
            I++ N+ L++ +++     K +AG        W+ LQ   A  INS V    F  Q    
Sbjct: 233  ILKINSGLERAILDG----KDIAGRTSAVGPSWDVLQSLHALMINSGVNLNAFPSQFRIK 288

Query: 200  -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
              P    VQRLKGKQGRFR NL GKRV +T R+VISPDPNL+I +V IPI +A+ LT+ E
Sbjct: 289  DTPRQSLVQRLKGKQGRFRQNLQGKRVNFTARSVISPDPNLRIDQVGIPIDVAKKLTFAE 348

Query: 259  RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            +V+ +NI +++  ++NG  +YPGA  I Y +G         +N           + RHL 
Sbjct: 349  QVTRYNINQMKTLVKNG-GEYPGANEILYKNG--------MKNH---------TIHRHLH 390

Query: 319  DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
            DGD+VLFNRQPSLHR S+M H+ ++MPW+T RFNE VC PYNADFDGDEMN+H+PQT EA
Sbjct: 391  DGDIVLFNRQPSLHRQSMMSHQVKVMPWKTFRFNECVCAPYNADFDGDEMNVHLPQTNEA 450

Query: 379  RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF-SLMCCYMGDG 437
            R+EA++LMGV++N  T ++GE LVAS QDF+T+ +L+T+KD F+    F  L+       
Sbjct: 451  RSEAMVLMGVKSNTLTCRSGEPLVASIQDFITAMYLLTQKDVFFTHQEFLRLITTVTARN 510

Query: 438  MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
              R+ +P P IL+P  LW+GKQ+FS                +++  +  +     G  + 
Sbjct: 511  KGRLRIPHPCILRPTPLWSGKQVFSS--------------EIEKGKWIWRGTACVGYSKN 556

Query: 498  RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
              E +C ND +V  RNSEL++G + K +LG+G+K  ++ +L RDYG  A +  M R+ ++
Sbjct: 557  SPEMIC-NDSWVLIRNSELVAGTMDKNSLGSGSKKQVFYMLTRDYGEEAAAQAMWRMCRI 615

Query: 558  SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
              R++ N GFSIGI DV   + L DKK K+I E Y   +  I      KL+L+PGC A +
Sbjct: 616  GPRYLSNRGFSIGIGDVWASENLLDKKMKVIGEQYRKVDEHILAKKHNKLKLQPGCTADE 675

Query: 618  TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
            TLE ++   L++IR+DA KAC   L   N+PL M+ CGSKGS INI+QMVACVGQQ + G
Sbjct: 676  TLENIVQKELSKIRDDAAKACFAELSKFNTPLNMALCGSKGSNINIAQMVACVGQQVLSG 735

Query: 678  RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
             R PNGF  RSLPHF R +K+P ++GFV NSF+SGL+ TEFFFHTMGGREGLVDTAVKTA
Sbjct: 736  SRIPNGFEARSLPHFERDSKDPKSRGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTA 795

Query: 738  DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
             TGYM RRL+KALE L +QYD +VRN    ++QF YG+D +DP  MEG S  P++FDR+ 
Sbjct: 796  STGYMQRRLVKALEGLCVQYDGTVRNTDDRVIQFTYGEDQLDPQEMEGDS-RPVDFDRVW 854

Query: 798  MKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKES----CSEAFLNSLRKFFEGQQDKLD 853
                        R L   ++ ++V + +    K+       E F    R F +    +  
Sbjct: 855  TDSICRFGSQKDRALCCDEIKDLVRESVEKVKKDKRFKYNDEGFGVGFRNFLDNTTIEFA 914

Query: 854  KKIKFVEDIGWD-----------------------------DKSQILEE--VTHKTSGIT 882
             K   +    W+                             D +Q + +    H  + ++
Sbjct: 915  DKQADIVKSHWESYGVYAKSDEERARYQALRTTAKQDELSSDLTQTVADSVFLHLCAYLS 974

Query: 883  EKQL--EVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  ++F++ C  +Y   R+E GT +GAI A SIGEP TQMTLKTFHFAGVASMNITQ
Sbjct: 975  DQTILFKLFVERCALKYFKARMEPGTCVGAICATSIGEPATQMTLKTFHFAGVASMNITQ 1034

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRL 1000
            GVPRI++IIN  ++I TPII A+L   D++  A+ V  ++EKT LG++ + I+ V  +  
Sbjct: 1035 GVPRIEQIINNTQKIKTPIIMAKLTTEDSKEFAQEVASKLEKTTLGEICEFIQEVHNADE 1094

Query: 1001 ASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIF-PPVDKSK 1059
            + +++ LD + ++   + +  + +K SI     +KLK   I       L I     + S+
Sbjct: 1095 SFLLLKLDTKRVRLLKMRVTVESIKHSIA-ISSLKLKLGQIIAHGESILTIHSSSYNDSE 1153

Query: 1060 IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVM 1119
                L +LK+ +  V+V+G+K + R VI+ ++K         ++  Y ++++G  L  V+
Sbjct: 1154 WQMSLPNLKDSICAVLVQGLKEINRAVISHQDK---------KEGFYEMIIDGNDLGGVL 1204

Query: 1120 GAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTF 1179
               GID  +T SNHI +V + LG+EAAR  II+E+  TM  HG+ +D+RH+M+LAD MT+
Sbjct: 1205 ATRGIDWSRTSSNHIPKVFEILGVEAARSTIINEMTNTMGHHGIHVDRRHLMMLADYMTY 1264

Query: 1180 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLG 1239
             G V G TR G+  +  S L L+SFEKT+D L+NA+  G+ D + G S  +I+G+P+ LG
Sbjct: 1265 TGPVFGCTRIGLANVSNSPLHLSSFEKTSDILYNAAYYGQRDSLAGPSAALILGVPIELG 1324

Query: 1240 TGILKIRQ 1247
            TG+ K+ Q
Sbjct: 1325 TGLFKLYQ 1332


>gi|358342624|dbj|GAA33483.2| DNA-directed RNA polymerase III subunit RPC1 [Clonorchis sinensis]
          Length = 1462

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1225 (41%), Positives = 738/1225 (60%), Gaps = 75/1225 (6%)

Query: 33   PRCGYINGMVKKAVAVLGII-HDRSKVTESLQEFASAITHTKESKAAVNVATYILNPVNV 91
            P+ G++      + AV  +  + +SK+ + + E++S I    E    ++    I+ P   
Sbjct: 228  PKLGFVTKGANLSYAVHDVYRYAKSKIDDHVNEYSSVILENPELSTLLHKGLEIIRPARA 287

Query: 92   LFLFKRMTDTDCEVLYL------SERPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDIT 144
            L LF ++ ++D  +L +      +  P+ LI+  + V P +IRPSV+ +  S +NE+D+T
Sbjct: 288  LQLFSKIPESDLPLLMMPGGDSWTTHPKDLIVQRVPVAPSSIRPSVVSEVRSGTNEDDLT 347

Query: 145  ERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSG 204
            +  + I+   A++++++ EA+     +A  + L  E A+ INS   G+P  +Q  + + G
Sbjct: 348  QMYQWILAQAATIEEDITEADQ----VACLDNLHAEFARMINSQQSGLP-PVQDHKFMRG 402

Query: 205  FVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHN 264
             +QRL GK GRFRGNL GKR  YT RTVISPDPNL+I EV +P   A++LT+P RV+  N
Sbjct: 403  LLQRLSGKHGRFRGNLLGKRTNYTARTVISPDPNLRIDEVCVPDHCAKLLTFPARVTTFN 462

Query: 265  IEKLRQCIQNGPDKYPGARMIRY---------------PDGTARVLY-GKFRNQLAVELK 308
            ++ LR  + NGP++YPGA  + Y                D   R L   + R  +A  L+
Sbjct: 463  LDFLRSLVLNGPNRYPGALFVSYKLRGEQKRQAEATGSSDVVKRFLASARAREDVARHLQ 522

Query: 309  SGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEM 368
             G +V+RHL DGD++LFNRQPSLHR+SI   +A + P+RT RFN   CNP+NADFDGDEM
Sbjct: 523  PGDVVERHLVDGDIILFNRQPSLHRVSIQAFKAVVKPFRTFRFNPCCCNPFNADFDGDEM 582

Query: 369  NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 428
            N+H+PQTE AR EA  LM    N+ +PKNGE L++  QD +T++ L+T KD F+ R    
Sbjct: 583  NVHLPQTEAARAEAKHLMLSLRNIVSPKNGEPLISPIQDLITATHLLTLKDVFFTRDQAC 642

Query: 429  LMCCYMGDG---MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKT-Y 484
             +   +  G      + LP PAI+KP  LWTGKQLFS+++ PH +  V +N+    K+ Y
Sbjct: 643  QLASQIIAGNHLYQPIKLPKPAIMKPRRLWTGKQLFSLILSPHPSTGVKINIRQATKSVY 702

Query: 485  SNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA 544
            SN           R E MCPNDGF+   NS+L++G   K  LG G+K  ++  LLR+YG+
Sbjct: 703  SN-----------RGEEMCPNDGFILIHNSQLLAGCADKKLLGGGSKASIFYSLLRNYGS 751

Query: 545  HATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNE 604
               +  M RLA++S  ++ + GFSIG+ +V P +EL   K K+I   +  C+  I +Y +
Sbjct: 752  ETCADAMWRLARISLFYLAHRGFSIGLGEVMPSQELVKSKTKVIDVGFSTCDDYIHQYEK 811

Query: 605  GKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINIS 664
              L+  PGC    TLE+ ++  L++IR++AG AC   L   NSPL+M+Q GSKGS +NIS
Sbjct: 812  NTLKCNPGCSMEDTLESNLSQELSKIRDEAGAACKRQLHPSNSPLVMAQSGSKGSFLNIS 871

Query: 665  QMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMG 724
            QM+ACVGQQ +GG+R P+    RSL HFPR ++ P AKGFV NSFYSGL+ +EFFFH M 
Sbjct: 872  QMIACVGQQVIGGKRVPDVINGRSLIHFPRGSRTPEAKGFVGNSFYSGLTPSEFFFHAMS 931

Query: 725  GREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
            GREGL DTAVKTADTGYM RRLIK LEDL+I YDN+VR++ G I+QF YG DG+DP  ME
Sbjct: 932  GREGLTDTAVKTADTGYMQRRLIKFLEDLTIAYDNTVRDSRGDIIQFCYGSDGLDPLEME 991

Query: 785  GKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKF 844
             ++  P++ ++ L  ++   P   +  L+P+Q+   +   L          A    +  F
Sbjct: 992  VETF-PVDLNKELNNLRTNFPCPDEEALTPEQIDTALHAALGLEAFSFMGPAVKMEILSF 1050

Query: 845  FEGQ---QDKLDKKIKFVEDIGWDDKSQILEEVTH-KTSGITEKQLEVFIQTCFSRYRVK 900
            F      + ++  +   ++ +G  D       + H + + +T+ Q+ +F+     +Y   
Sbjct: 1051 FAKSVYPRLRVWHQFCLMDSVGQCD-------IGHPEDARLTQTQVRLFLTRIKEKYEKA 1103

Query: 901  RVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPII 960
             +E G+A+GA+  QS+GEP TQMTLKTFHFAGVASMNITQGVPR++EI+N A +I TP++
Sbjct: 1104 LIEPGSAVGALCGQSVGEPATQMTLKTFHFAGVASMNITQGVPRMREIVNAAAKIKTPLL 1163

Query: 961  TAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCIN 1020
            T  L    + + AR VK  IE T L  ++ S++  +T     + + LD + +  A   I 
Sbjct: 1164 TVTLTDPFSASLARQVKLAIEPTRLADISISLRQCLTPEDVYVSVKLDEKRM--ARRGIT 1221

Query: 1021 ADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIK 1080
               V  S++Q+ K++ K +  +V   +      PVD +     L ++  VL  V+VKGI 
Sbjct: 1222 TARVA-SVIQSTKLR-KVKLSRVTYSKNFVYVYPVDLNT----LETVVKVLEDVVVKGIP 1275

Query: 1081 TVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQT 1140
             V RVVI           +  +  ++R+ VEG  L+ VM   G+    T+SN+I EV+Q 
Sbjct: 1276 GVARVVI-----------QQDKDLEHRIYVEGAKLREVMCVPGVVPECTRSNNILEVEQV 1324

Query: 1141 LGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLM 1200
            LG+EAAR  +IDE+   M+ HG+ ++ RH+MLLAD+MT RGEV G  R G+ K   SVL 
Sbjct: 1325 LGVEAARRVVIDELLAVMEGHGVEVNIRHVMLLADVMTNRGEVYGYQRTGMAKAKNSVLC 1384

Query: 1201 LASFEKTADHLFNASVNGRDDRIEG 1225
            LASFE+T DHLF A+ +G+DD++ G
Sbjct: 1385 LASFERTGDHLFEAAYHGQDDKVIG 1409


>gi|303276410|ref|XP_003057499.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461851|gb|EEH59144.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1591

 Score =  893 bits (2307), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/835 (52%), Positives = 585/835 (70%), Gaps = 45/835 (5%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            RNP++E + +  L K +  +C     +   C  CG  NG+VK+A   L I+H++     
Sbjct: 150 FRNPRLENVPRRALSKKMADRCK----RCRTCYYCGAANGVVKRAGQSLKIVHEKYSKNP 205

Query: 58  --VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKL 115
             + E L++F  A+    + K  ++     LNP+ V+ +F+R++  DCE+L +++RPE L
Sbjct: 206 ELMEEYLKQFEEAVKFNDQLKQNLSRVQDDLNPIRVISIFRRISPMDCELLDIADRPEHL 265

Query: 116 IITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGW 174
           I+T++ VPP+ IRPSV MDG + SNE+DIT +L +II+ N  L+Q L +  +    +  W
Sbjct: 266 ILTHLPVPPVCIRPSVEMDGVAGSNEDDITMKLIQIIEVNNVLRQGLEKGLAIANLMENW 325

Query: 175 ETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVI 233
           + LQV++A Y NS++ G+    Q   +PL GFVQRLKGKQGRFRGNLSGKRV+++GRTVI
Sbjct: 326 DFLQVQIAMYFNSELPGLSLQYQGPGKPLRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVI 385

Query: 234 SPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTAR 293
           SPDPNL+I EV +P+ +A+++TYPE +S HNIE +R+ ++NG +K+PGA  +R+  G  +
Sbjct: 386 SPDPNLRIDEVGVPMHIAKLMTYPEVISKHNIEHIRERVRNGMNKHPGANFVRFKSGGTQ 445

Query: 294 VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNE 353
            L    R ++A ELK G +V+RHL DGDV+LFNRQPSLH+MSIM HRA+IMPWRTLRFNE
Sbjct: 446 YLKYGDRRRVASELKFGDVVERHLNDGDVLLFNRQPSLHKMSIMAHRAKIMPWRTLRFNE 505

Query: 354 SVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSF 413
            VC PYNADFDGDEMN+H PQTEEAR EA+ LMGV  NLCTPKNGEIL+A+TQDFLT+S+
Sbjct: 506 CVCAPYNADFDGDEMNIHCPQTEEARAEAIELMGVHKNLCTPKNGEILIAATQDFLTASY 565

Query: 414 LITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH----- 468
           L+T +D+F DRA   L+   MGD                 L +G   +S+   P+     
Sbjct: 566 LLTSRDSFLDRAQVGLLVAMMGDA----------------LMSGA--YSLHWSPYDRVGV 607

Query: 469 ANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGN 528
           A+ +V+VNL V EK+Y               + MCP DG+V  +NSE++ GQLGKATLG 
Sbjct: 608 ASDQVFVNLEVAEKSYGKVG-----------KHMCPRDGYVCVQNSEIMCGQLGKATLGG 656

Query: 529 GNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLI 588
           GNK GL+ VL  +YG   T+  MNR+AKLSARW+G+ GFS+GIDDV P   LS +K K++
Sbjct: 657 GNKTGLFYVLNSEYGPEVTASAMNRVAKLSARWLGSRGFSVGIDDVTPGARLSAEKAKVV 716

Query: 589 SENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSP 648
           S+ Y  C+ +I+ + +G L L+PGC+A QTLE+ +  IL+ +RE AG AC+  LP  N+P
Sbjct: 717 SKGYADCDTRIEAWKQGTLALQPGCNAEQTLESEVLGILSNVRETAGNACLEELPRINAP 776

Query: 649 LIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANS 708
           LIM+ CGSKGS INISQMVACVGQQ+VGG+R P+GF +RSLPHF R  K PAAKGFVANS
Sbjct: 777 LIMALCGSKGSTINISQMVACVGQQAVGGQRPPDGFAERSLPHFRRGEKTPAAKGFVANS 836

Query: 709 FYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCI 768
           F+SG+  TEFFFHTM GREGLVDTAVKTA+TGYMSRRL+KALEDLS++YD +VRN+ G I
Sbjct: 837 FFSGMRPTEFFFHTMAGREGLVDTAVKTAETGYMSRRLMKALEDLSLRYDGTVRNSTGGI 896

Query: 769 VQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEK 823
           VQ  YGDDG++P +MEG+  +P++F RL+M V+   P A Q  +    V   + K
Sbjct: 897 VQLTYGDDGLEPTDMEGREAQPVDFSRLIMHVRGIVPRARQPLVGEDDVRAALAK 951



 Score =  415 bits (1066), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/388 (55%), Positives = 267/388 (68%), Gaps = 30/388 (7%)

Query: 880  GITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNIT 939
            G+T  QL+ F+  C  +Y  KR+E G+A+GA+GAQSIGEPGTQMTLKTFHFAGVASMNIT
Sbjct: 1163 GVTAAQLDEFLARCVQKYDAKRIEPGSAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNIT 1222

Query: 940  QGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSR 999
             GVPRIKEIIN +K ISTPIITA L C+D+  AARVVKGR+EKT LG+V K I +V    
Sbjct: 1223 LGVPRIKEIINASKNISTPIITATLACDDDVKAARVVKGRVEKTTLGEVCKHIHVVFDPT 1282

Query: 1000 LASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP----- 1054
               + +ALD + I+   L +    VK +++ T K+KLK   +       L + PP     
Sbjct: 1283 ACYLEVALDPDVIRALQLDVTVATVKRALLSTTKLKLKPNRVLERAGNVLHVLPPDASDA 1342

Query: 1055 -----------VDKSKIH---FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKEN 1100
                       V  + IH   F L +L+  +P VIV+GI +V R VI +K          
Sbjct: 1343 AAARTAAARDAVGPAAIHRDAFNLQNLRTAVPNVIVQGIPSVSRAVINDKGG-------- 1394

Query: 1101 GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKA 1160
                K  L+VEGT L+AVM  EGI+G +T +NH+ E ++TLGIEAAR CII EIN+TMKA
Sbjct: 1395 ---GKLNLVVEGTDLRAVMATEGIEGTRTTTNHVMEAERTLGIEAARFCIIKEINDTMKA 1451

Query: 1161 HGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRD 1220
            HGMSID RH MLLAD+MT++GEVLGITRFG+ KM  SVLMLASFEKT DHLF+A++ GR 
Sbjct: 1452 HGMSIDARHSMLLADVMTYKGEVLGITRFGMAKMKDSVLMLASFEKTTDHLFDAALRGRV 1511

Query: 1221 DRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            D I+GVSECIIMGIPMP+GTG+ K+R R
Sbjct: 1512 DTIDGVSECIIMGIPMPVGTGMFKLRHR 1539


>gi|316997015|dbj|BAJ52635.1| RNA polymerase III largest subunit [Ephydatia fluviatilis]
          Length = 899

 Score =  893 bits (2307), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/911 (52%), Positives = 614/911 (67%), Gaps = 57/911 (6%)

Query: 369  NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 428
            N+H+PQTEEA+ EA++LMGV++NL TP+NGE L+A+ QDF+T+S+L+T+KD F+DRA F 
Sbjct: 1    NLHLPQTEEAKAEAVVLMGVKSNLVTPRNGEPLIAAIQDFITASYLLTQKDVFFDRALFC 60

Query: 429  LMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS 485
             +   M  G D   ++D+P PAI KP +LWTGKQ+ S+LIRP+ N  V +NL  K K Y 
Sbjct: 61   QVVASMLHGKDTLLKIDIPPPAIWKPAKLWTGKQVISLLIRPNQNSSVIMNLRAKGKQY- 119

Query: 486  NKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAH 545
                 T+G      E +C  D FV   NS+ + G L K+ LG+G+K  ++ +LLRDYG  
Sbjct: 120  -----TKG------EDLCSCDSFVVIYNSQHMCGCLDKSALGSGSKTNIFYILLRDYGEQ 168

Query: 546  ATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEG 605
              + CM+RLA+L   ++ N GFS+GI DV P K+L   K +L++E Y  C   I  + EG
Sbjct: 169  VAADCMSRLARLCPYFLTNRGFSMGISDVTPGKKLIAAKERLVTEGYAKCEDFISSFKEG 228

Query: 606  KLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQ 665
            KLQ +PGC A +TLEA I   L+ IRE AGKAC   L   N PLIM+  GSKGS INISQ
Sbjct: 229  KLQTQPGCTAEETLEAKILHELSVIRESAGKACKSELHHTNGPLIMALSGSKGSFINISQ 288

Query: 666  MVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGG 725
            M+ACVGQQ++ G+R P+GF DRSLPHFPRK+K P AKGFV NSF++GL+  EFFFHT+GG
Sbjct: 289  MIACVGQQAISGKRIPDGFEDRSLPHFPRKSKSPGAKGFVENSFFTGLNPAEFFFHTVGG 348

Query: 726  REGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEG 785
            REGLVDTAVKTA+TGYM RRL+K+LEDL   YD +VRN+ G +VQF YG DG+DPA MEG
Sbjct: 349  REGLVDTAVKTAETGYMQRRLVKSLEDLCSNYDLTVRNSEGFVVQFTYGGDGLDPAAMEG 408

Query: 786  KSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFF 845
            +   P+ F R+L  +KA  P   +  LSP Q+  + E  L A   + CS+ F   +++F 
Sbjct: 409  QD-IPVEFPRVLQHIKAKFPCRNESPLSPSQLEFLCEMILKA-DFQFCSDEFKRGMKEF- 465

Query: 846  EGQQDKLDKKIKFVEDIGW------DDKSQILEE-----------------VTHKTSGIT 882
                  LDK  K ++  GW      D  +Q  E+                 V ++   IT
Sbjct: 466  ------LDKVTKILQQ-GWNRHGLEDPFAQGKEKCGRAGELLSPVDPSKPSVLYEQDRIT 518

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
            + QLE F+  C  +Y   R E GTA+GAI AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 519  KTQLENFVNVCSDKYMRARTEPGTAVGAICAQSIGEPGTQMTLKTFHFAGVASMNITLGV 578

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN +K ISTPIITA L+ +D+   ARVVKGRIEKTLLG+VA+ I+ V       
Sbjct: 579  PRIKEIINASKIISTPIITAPLDVDDDPEFARVVKGRIEKTLLGEVARFIEEVYEPDDCY 638

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
            I I LD   I+   L I+A  +  S+   PK+KLK  ++ +     + I PP + KS ++
Sbjct: 639  IRIVLDTNRIRLLKLEIDAYSIAASLCTAPKLKLKPPNVTIRSEATVHISPPDNSKSSLY 698

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            + +  LK+ LP V+VKGI +V R +I + E +           KY+LLVEG  LQAV+G 
Sbjct: 699  YSMQFLKSQLPNVVVKGITSVTRAIIHKDEGK--------SGNKYKLLVEGMNLQAVIGT 750

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G+ G  TKSNH  EV++TLGIEAAR  IIDEI  TM +HGMSID RH+MLLADLMTF+G
Sbjct: 751  VGVKGPATKSNHTAEVEKTLGIEAARKTIIDEIAYTMSSHGMSIDVRHVMLLADLMTFKG 810

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+ +G++D I GVSECIIMGIPM +GTG
Sbjct: 811  EVLGITRFGLAKMRESVLMLASFEKTADHLFDAAFHGQEDAINGVSECIIMGIPMSIGTG 870

Query: 1242 ILKIRQRDAVP 1252
            + K+  + A P
Sbjct: 871  LFKLLHKSAKP 881


>gi|256083198|ref|XP_002577836.1| RNA polymerase Rpb1 [Schistosoma mansoni]
 gi|360044779|emb|CCD82327.1| putative rna polymerase Rpb1 [Schistosoma mansoni]
          Length = 1342

 Score =  884 bits (2284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1212 (41%), Positives = 720/1212 (59%), Gaps = 86/1212 (7%)

Query: 3    NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD-----RSK 57
            NP ++ + K  L K+I K    ++S+   CP C  +NG+V K  ++  ++HD     ++K
Sbjct: 131  NPSLDYVHKKQLRKAIHK----LSSRVHVCPFCSALNGVVTKGTSLSYVVHDIFRHAKAK 186

Query: 58   VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL------SER 111
            V E + EFA  IT   +    V     I+ P   L LF ++ + D  +L +      +  
Sbjct: 187  VDEYVNEFAKVITENTDLAPVVRKGLEIIRPGKALQLFSKIPEEDLPLLLMPFDSQWTTH 246

Query: 112  PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
            P  LI+  + V P AIRPSV+ +  S +NE+D+T+  + I+   A++++++ EA+     
Sbjct: 247  PRNLIVQRVPVCPSAIRPSVVSEVRSGTNEDDLTQMYQWILAQAATIEEDIGEADQ---- 302

Query: 171  LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
            +A  + L  E A+ INS   G+P  +Q  + + G +QRL GK GRFRG+L GKR  +T R
Sbjct: 303  IACLDNLHAEFARLINSQQSGLP-PVQDHKFMRGLLQRLAGKHGRFRGSLLGKRTNFTAR 361

Query: 231  TVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY--- 287
            TVISPDPN++I EV IP+  A++LTYPERV+D N+  LR  + NGP+ YPGA  + Y   
Sbjct: 362  TVISPDPNMRIDEVCIPVHCAKLLTYPERVTDFNLNFLRSLVLNGPNNYPGAMFVSYKLR 421

Query: 288  ------------PDGTARVLYG-KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRM 334
                         D   R L   + R  +A  L+SG IV+RHL D D+VLFNRQPSLHR+
Sbjct: 422  GERKRQAEASGNSDVVKRFLASERAREDVAKYLQSGDIVERHLLDDDIVLFNRQPSLHRV 481

Query: 335  SIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCT 394
            SI   RA + P+RT RFN   C P+NADFDGDEMN+H+PQTE AR EA  LM    N+ +
Sbjct: 482  SIQAFRAVVKPFRTFRFNPCCCTPFNADFDGDEMNIHLPQTEAARAEAKHLMLSLKNIVS 541

Query: 395  PKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRV-DLPTPAILKP 451
            PKNGE L++  QD +T++ L+T KD F +R     +   +  G+ + R+  LP PAIL P
Sbjct: 542  PKNGEPLISPIQDLITATHLLTLKDVFLNRDQACTLAAQLLAGNHLGRLLSLPKPAILWP 601

Query: 452  VELWTGKQLFSVLIRPHANMRVYVNLTVKEKT-YSNKLIRTEGDEEIRIETMCPNDGFVY 510
            V LWTGKQ+F +++ PH +  + VNL V  K+ YS+K     G E      MCPNDGFV 
Sbjct: 602  VALWTGKQIFGLILSPHPSTGIKVNLRVPTKSMYSSK-----GQE------MCPNDGFVL 650

Query: 511  FRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIG 570
             +NSEL++G + K  LG G+K  ++  LLRDYG  A +  M RL +++  ++ + GFSIG
Sbjct: 651  IQNSELLAGCVDKKLLGGGSKSSIFYTLLRDYGREACADAMWRLGRIALFFLAHRGFSIG 710

Query: 571  IDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRI 630
            + +V P  +L   K  LIS  +  C+  I +Y    L   PGC    TLE+ I+  L++I
Sbjct: 711  LGEVMPSSDLVASKTALISRGFATCDDYINQYQMNTLVCNPGCSMEDTLESNISQELSKI 770

Query: 631  REDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLP 690
            R++AG AC   L   NSPL+M+Q GSKGS +NISQM+ACVGQQ +GG+R P+    RSL 
Sbjct: 771  RDEAGAACKRQLHPSNSPLVMAQSGSKGSFLNISQMIACVGQQVIGGKRVPDVINGRSLV 830

Query: 691  HFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKAL 750
            HFP  ++ P AKGFV NSFYSGLS +EFFFH M GREGL DTAVKTADTGYM RRL+K L
Sbjct: 831  HFPPGSRTPEAKGFVGNSFYSGLSPSEFFFHAMSGREGLTDTAVKTADTGYMQRRLVKFL 890

Query: 751  EDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQR 810
            EDL++ YD++VR++ G I+QF YG DG+DP  ME  +  P+NF + +  ++ +     + 
Sbjct: 891  EDLAVAYDDTVRDSRGDIIQFRYGSDGLDPLEMETDTF-PVNFVKEMEHIRTSYDCPHEV 949

Query: 811  YLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQI 870
             +S +++   VE                +++++F     + +  +I+  ++  W  +   
Sbjct: 950  GMSAEELELAVEVVFQLDAFRHLDSRLCSAIKEFI---HNSVCPRIRKWQE--WCTEHAN 1004

Query: 871  LEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHF 930
               + ++   +T  QL +F+     +Y    +E GTA+GA+  QS+GEP TQMTLKTFHF
Sbjct: 1005 GSNLINQNERLTRTQLRIFLTHVKEKYEKALIEPGTAVGALCGQSVGEPATQMTLKTFHF 1064

Query: 931  AGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAK 990
            AGVASMNITQGVPR++EI+N A RI TP+I   L    + + AR VK  IE T L  ++ 
Sbjct: 1065 AGVASMNITQGVPRMREIVNAAARIKTPLICVTLTDPFSASLARQVKLSIEPTRLADISL 1124

Query: 991  SIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLE 1050
            S+   +T     + I LD + +      I    V  +I  T   KLK+  +  + + K  
Sbjct: 1125 SLSQCLTPEYVYVAIKLDKKRMDRRG--ITTPQVATAIQTT---KLKKTKLSRVTYSKDY 1179

Query: 1051 IFP-PVDKSKIHFELYSLKNVLPM---VIVKGIKTVERVVIAEKEKEKRKVKENGEKKKY 1106
            IF  PVD       L +L+ V+ +   VIVKGI  V RVVI +            +K ++
Sbjct: 1180 IFVYPVD-------LNALETVVKLVEDVIVKGIPGVSRVVIQQ------------DKGEH 1220

Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             + VEG  L+ VM   G+   +T+SN+I EV+Q LG+EAAR  +IDE+   M+ HG+ ++
Sbjct: 1221 IIFVEGARLREVMCIPGVVAERTRSNNILEVEQVLGVEAARRVVIDELLAVMEGHGVEVN 1280

Query: 1167 KRHMMLLADLMT 1178
             RH+MLLAD+MT
Sbjct: 1281 VRHVMLLADVMT 1292


>gi|308449389|ref|XP_003087948.1| CRE-RPC-1 protein [Caenorhabditis remanei]
 gi|308250793|gb|EFO94745.1| CRE-RPC-1 protein [Caenorhabditis remanei]
          Length = 1027

 Score =  884 bits (2284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1041 (47%), Positives = 655/1041 (62%), Gaps = 73/1041 (7%)

Query: 268  LRQCIQNGPDKYPGAR-MIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDVVLF 325
            +RQ + NG D +PGA  ++    G  ++L YGK R++LA  L+ G  V+RHL+D DVVLF
Sbjct: 1    MRQLVINGSDIHPGANYLVDKKTGNKKLLKYGK-RDELAKLLRLGDTVERHLDDNDVVLF 59

Query: 326  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
            NRQPSLH++SIM HRA++MP RT RFNE  C PYNADFDGDEMN+H+PQT EA+ EA  L
Sbjct: 60   NRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASEL 119

Query: 386  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG----MDRV 441
            M V+NNL TP++GE LVA+ QDF+T  +L+T KDTF  RA        + D       ++
Sbjct: 120  MNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKI 179

Query: 442  DLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET 501
             +P PAI KPVELWTGKQL  ++IRP    ++ +NLT K K+YS  L             
Sbjct: 180  RIPPPAIRKPVELWTGKQLIELIIRPDKGSQISLNLTAKNKSYSGNL------------E 227

Query: 502  MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARW 561
            +C  D +V  RNS L++G L K+ LG+ +K  ++ +L+RDYG  A    M RLA+++  +
Sbjct: 228  LCSKDSYVIIRNSVLLAGVLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVF 287

Query: 562  IGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEA 621
            + N GFSIGI DV+P + L  +KG+L+   YE C   I+E  EGKL+ +PGC   +TLEA
Sbjct: 288  LSNRGFSIGIGDVRPSERLLQEKGQLVDTGYEQCAQYIRELEEGKLKAQPGCTEEETLEA 347

Query: 622  VITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
            +I   L+ IR+ AG+ C+ +L   N+PL M+ CGSKGS INISQM+ACVGQQ++ G R P
Sbjct: 348  IILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPP 407

Query: 682  NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
            +GF +RSLPHF RK K P AKGFVANSFYSGL+ TEFFFHTMGGREGLVDTAVKTA+TGY
Sbjct: 408  DGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGY 467

Query: 742  MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL---- 797
            M RRL+K LEDL   YD +VR++ G +++F++G+DG+DPA ME K G  ++F  +L    
Sbjct: 468  MQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAK 527

Query: 798  -MKVKATCP-PA----------------GQRYLSPQQV------SEIVEKQLAAYGKESC 833
             ++ K   P PA                G+     +Q+      +EI + +    GK  C
Sbjct: 528  NIQTKKETPIPADKLEDVLKNEVQKQFKGKYPHFAEQLKDYLLQTEIRKSKKWQNGKTHC 587

Query: 834  SEAFL----NSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKT-----SGITEK 884
            S+       +  R+    +      K   +E +   +     E +  K+     S +T+ 
Sbjct: 588  SQHETAEENHHCRRVQSARSXXXXVKNGRMEKLTVHNIETAEENIREKSLLLTNSCLTKA 647

Query: 885  QLEVFIQTCFSRYRVKR--VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
            QL  FIQ C+  Y+V R   E GTA+GAI A SIGEP TQMTLKTFHFAGVASMNITQGV
Sbjct: 648  QLHSFIQLCY--YKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGV 705

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PRIKEIIN  K ISTPIITA L    +E+ AR VK RIEKT LG++   I+ V       
Sbjct: 706  PRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYF 765

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRK--LEIFPP-VDKSK 1059
            +++ L+ + I+   L ++ + +  +I  T K+    +  K++   K  + I PP   K  
Sbjct: 766  LLVKLNSKRIRLLQLEVSLESIAFAI-STSKVCPMMRGCKIVAHGKTMMAIRPPSTSKLS 824

Query: 1060 IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVM 1119
                +  LK  L  V++KGI +V R VI   EK         +   Y LLVEGT  ++V+
Sbjct: 825  KTMTMQMLKYSLGNVVIKGISSVNRCVIHADEK---------KGDFYSLLVEGTDFRSVL 875

Query: 1120 GAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTF 1179
             + G+D  KT  N+   V + LGIEAAR CII+EI  TM AHG+ +D+RH+MLLAD+MT+
Sbjct: 876  SSVGVDPRKTNFNNALVVAEVLGIEAARTCIINEIIATMDAHGIGLDRRHVMLLADVMTY 935

Query: 1180 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLG 1239
            RGEVLGITR G+ KM  SVL+LASFEKT DHLF A+   + D I GVSECIIMG PM +G
Sbjct: 936  RGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVG 995

Query: 1240 TGILKIRQRDAVPPMLKYGAP 1260
            TG  K+ Q+     +LK  +P
Sbjct: 996  TGTFKLMQKHEKKAILKQNSP 1016


>gi|300707342|ref|XP_002995883.1| hypothetical protein NCER_101107 [Nosema ceranae BRL01]
 gi|239605116|gb|EEQ82212.1| hypothetical protein NCER_101107 [Nosema ceranae BRL01]
          Length = 1335

 Score =  881 bits (2276), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/1295 (40%), Positives = 760/1295 (58%), Gaps = 141/1295 (10%)

Query: 7    EALRKTDLM---KSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIH---------- 53
            E   + DL+   + IV +C  M     KC  C   NG +KK      I+H          
Sbjct: 127  ETANRNDLVLIQRKIVLECKKMT----KCVLCHAYNGTIKKGTG-FKILHEIEVVELKNS 181

Query: 54   DRSKV-TESLQEFASAIT----HTKESKAAVNVATYI-----LNPVNVLFLFKRMTDTDC 103
            D +K+ TE +  F    T    +T  SKA  +          +NP   L +F  +   D 
Sbjct: 182  DTNKLRTEEITGFDLGATSENKNTTNSKARRDKKNTFKKCIDINPQMALNIFSLIKSEDY 241

Query: 104  EVLYLSERPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQELV 162
            E L L + P K II NI VPP  IRPSV M +   +NE+D+T ++  II TN  L++ + 
Sbjct: 242  EFLGLEDSPVKFIIQNIIVPPACIRPSVGMAEKDSTNEDDLTIKISEIIHTNEVLKESID 301

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
              NS       WE+LQ++ A  +NSD+  +    Q   P+ G VQRLKGK GRFR NLSG
Sbjct: 302  RGNSINIINDDWESLQLQCALMVNSDLPQINVQSQ---PIKGIVQRLKGKSGRFRCNLSG 358

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISP+PNL I +V +P  MA+ILT PE+V+  N  +L+  ++NGP  YPGA
Sbjct: 359  KRVDFSGRTVISPNPNLSIDQVDVPEFMAKILTIPEKVTKFNKSRLQNLVKNGPKSYPGA 418

Query: 283  RMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRAR 342
              +        +LYG  R++   EL  G +V+RHL +GDVVLFNRQPSLHRMSIM H   
Sbjct: 419  NYVIGSKYKKFLLYGG-RDE---ELNEGDVVERHLVNGDVVLFNRQPSLHRMSIMSHFVN 474

Query: 343  IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILV 402
            I   +TLRFNE VC PYNADFDGDEMN+HVPQT EA +E + LMGV+ N+ T ++GE L+
Sbjct: 475  IHKNKTLRFNECVCAPYNADFDGDEMNIHVPQTVEAISECIELMGVKENIVTARHGEPLI 534

Query: 403  ASTQDFLTSSFLITRKDTFYDRAAF-SLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLF 461
            A+TQDF+T+ +LIT +DTF++R  F  L+ C+      R+ + TPAI++P+EL+TGKQL 
Sbjct: 535  AATQDFITALYLITSRDTFFNRQKFGQLLSCFCET---RIKI-TPAIVQPIELFTGKQLV 590

Query: 462  SVLIRPHANMR-----VYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSEL 516
              +I  H++++       +NL  K ++++N                  NDGF   +N   
Sbjct: 591  EAMI--HSSLKKKSDVFKLNLKTKNRSFTN--------------LWHVNDGFFVIKNGNY 634

Query: 517  ISGQLGKATLGNGNKDG--LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDV 574
            + G++ K  +G  +K    LY +L  D    + S  M  + ++++R++G  GFSIG+ DV
Sbjct: 635  MFGRIDKNIVGGESKCNSLLYELLKID--KLSASAMMFNITRIASRYLGEVGFSIGLVDV 692

Query: 575  QPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDA 634
             P   L  KK +++ + YE C   IKE +E          + +T E  I+  LN+IRE+ 
Sbjct: 693  LPGSLLQKKKTEVVHKGYEKCKEIIKENDE---------KSKETAEMEISFTLNKIREEC 743

Query: 635  GKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPR 694
            G  C+  L + NSP+IM  CGSKGS IN+SQM+ACVGQQ + G+R PNG ++R+LPHF +
Sbjct: 744  GSICINELSYYNSPIIMQACGSKGSKINVSQMIACVGQQIISGKRIPNGMLNRTLPHFAK 803

Query: 695  KAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLS 754
             +  P +KGFV NSF++G++ TEFFFH + GREGLVDTAVKTA+TGY  RRL+KALEDL+
Sbjct: 804  FSITPESKGFVENSFFTGMTPTEFFFHAVSGREGLVDTAVKTAETGYTQRRLMKALEDLN 863

Query: 755  IQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSP 814
            ++YD SVR++   I+QF YGDDG+DP  ME    + ++ +++ + V+       + Y + 
Sbjct: 864  VKYDYSVRSSFNEIIQFKYGDDGIDPIIME--CDDFIDLEKVYIAVETKL----EEYKNL 917

Query: 815  QQVS----EIVEKQLAAY-------------GKESCSEAFLNSLRKFFEGQQDKLDKKIK 857
             ++S    + +E  + +Y             G    ++ F++S+  FF   + K D KI 
Sbjct: 918  CEISLHSLDTIENMVMSYCNDLRQDLFIRQYGLSILNQNFIDSIVDFF---RLKSDNKI- 973

Query: 858  FVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIG 917
                  + D   I    T +   +    ++  I+ C        +E GTA+GAI  QSIG
Sbjct: 974  ------YCDGRFIRIFYTREFFNLFFDLIKQKIKNCL-------IEPGTAVGAIAGQSIG 1020

Query: 918  EPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVK 977
            EPGTQMTLKTFHFAGVASMNIT GVPR+ EIIN    I+TPII   L+ ND  NA ++VK
Sbjct: 1021 EPGTQMTLKTFHFAGVASMNITLGVPRLIEIINAVVNINTPIINVSLDKNDLLNA-QIVK 1079

Query: 978  GRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLK 1037
            GR+ K L   +   +   +      I   +D+  I    L I+   +K+++  T +I + 
Sbjct: 1080 GRVLKVLFKDICNHVTDSVCKDGIFIDFKIDLNLINKLRLQIDMKSIKQNLNITEQITII 1139

Query: 1038 QQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVI---VKGIKTVERVVIAEKEKEK 1094
             +    ++           K+ I+  +Y+L+ +   ++   + G+ +V +V+I       
Sbjct: 1140 NEDTLRVNL----------KNSINHAIYNLQKLKKKIMNTKINGLSSVNKVLI------- 1182

Query: 1095 RKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEI 1154
                 + +K  ++ ++EG GLQ+++G +G+D   T SN I E+Q+ LGIEAAR  II EI
Sbjct: 1183 -----HNDKGMFKCIIEGYGLQSILGLKGVDYTTTTSNAILEIQEVLGIEAARAHIISEI 1237

Query: 1155 NETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA 1214
               +  HG+ ID RH+MLLAD MT++GEVLGITRFGI KM  S LMLASFE+T++HLF A
Sbjct: 1238 EYVVGKHGIKIDPRHVMLLADTMTYKGEVLGITRFGISKMSCSTLMLASFEQTSEHLFEA 1297

Query: 1215 SVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRD 1249
            ++  R D ++GVSE II+G  + +GTG +++   D
Sbjct: 1298 AIRSRSDEVKGVSESIILGKNIGIGTGEVQLFWND 1332


>gi|322696737|gb|EFY88525.1| DNA-directed RNA polymerase III largest subunit [Metarhizium acridum
            CQMa 102]
          Length = 1017

 Score =  880 bits (2274), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/993 (46%), Positives = 632/993 (63%), Gaps = 67/993 (6%)

Query: 303  LAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNAD 362
            +A EL  G +V+RH+EDGD+VLFNRQPSLH++SIM H  ++ PWRT R NE VCNPYNAD
Sbjct: 18   VANELCIGDVVERHIEDGDIVLFNRQPSLHKLSIMSHFVKVRPWRTFRLNECVCNPYNAD 77

Query: 363  FDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY 422
            FDGDEMN+HVPQTEEARTEA+ LMGV++NL TPK+GE ++A+TQDF+T+++L++ KD F+
Sbjct: 78   FDGDEMNLHVPQTEEARTEAMSLMGVKHNLITPKSGEPIIAATQDFITAAYLLSYKDRFF 137

Query: 423  DRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEK 482
            DR AF+ +C +M DG +++DLP PAI+ P  LWTGKQ+F+VL+RP+    V VNL  + K
Sbjct: 138  DRKAFTTICMHMLDGRNQLDLPPPAIIVPKTLWTGKQIFNVLMRPNNRSPVMVNLDARCK 197

Query: 483  TYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDY 542
            +   +          +   M PNDG++  RNS+++ GQ+ K+T+G G KD ++ V+LRDY
Sbjct: 198  SCVTR--------PGQYPDMDPNDGWLVVRNSQVMCGQMDKSTVGPGKKDSIFYVILRDY 249

Query: 543  GAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEY 602
            G       MNRLAKL AR++ N GFSIG+ DV P   L  +   L+S  Y+ C+  I  +
Sbjct: 250  GPDEAVSAMNRLAKLCARYLTNRGFSIGVGDVYPTASLRKEIDHLVSAAYKKCDNIITTF 309

Query: 603  NEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPIN 662
              G L+  PGCD  QTLE  I+ +L+++R+ AG+ C+ +L   N+PLIM++ GSKGS IN
Sbjct: 310  QAGSLEKAPGCDMEQTLENSISGVLSKVRQQAGEHCINTLSRHNAPLIMAKSGSKGSDIN 369

Query: 663  ISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHT 722
            ++QMV+ VGQQ +GG+R P+GF DRSLPHF + A++P++KGFV NSFYS L  TEF FH+
Sbjct: 370  VAQMVSLVGQQIIGGQRVPDGFQDRSLPHFHKNARQPSSKGFVKNSFYSALLPTEFLFHS 429

Query: 723  MGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPAN 782
            + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS++YDN+VR +GG IVQF +G D +DPA+
Sbjct: 430  ISGREGLVDTAVKTAETGYMSRRLMKSLEDLSVKYDNTVRTSGGNIVQFQFGADNLDPAD 489

Query: 783  MEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAY-------------- 828
            MEG +G P+ F R     ++      +  L P ++  I +  L  Y              
Sbjct: 490  MEG-AGTPVQFHRTWTHAESLTRDDDEPSLMPHEIGVICDSVLEPYRGRYVRKGLLHNEE 548

Query: 829  -----------GKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEV--- 874
                        +      FL S++ + +G   +L +K++ +   G+   + I E     
Sbjct: 549  LNYEDDSDYAIDEHESGRRFLKSIKSYIDGLASRL-RKVRTIA--GYQGNTPIRETAQDH 605

Query: 875  THKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 934
              +T+ +    L +FI+ C  ++    VE G  +GA+GAQSIGEPGTQMTLKTFHFAGVA
Sbjct: 606  VDRTAKVAATTLRLFIRLCLDKFTKAHVEPGHPVGAVGAQSIGEPGTQMTLKTFHFAGVA 665

Query: 935  SMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKI 994
             M+ITQGVPRI EIIN +K ISTP+IT  L       AA+VVK RIEKT +  +   I++
Sbjct: 666  GMSITQGVPRINEIINASKAISTPVITCPLLNKWQIEAAKVVKARIEKTYISDILCFIEV 725

Query: 995  VMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKV------LDFRK 1048
               S+   IV+ +D +T+ +    +    V ++I    K+K++ + I V      +  R+
Sbjct: 726  EWDSKSGHIVMQVDTDTLANMQAGVCVFDVAQAICDQRKLKVRPEDISVDKDMIFVRIRE 785

Query: 1049 LEIFPPVDKSK--------IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKEN 1100
             +  PP  K+K        +      L+  LP V + G     R +I           E 
Sbjct: 786  TDDLPPRSKTKSAAEESRDMMLRANFLRRTLPSVPISGYPEATRALI-----------ET 834

Query: 1101 GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKA 1160
             E+  YR+LVEG GL+  M  EG+ G + ++N + E  Q LGIEAAR  I +EI E M  
Sbjct: 835  TEENTYRVLVEGYGLRGCMATEGVVGTQVRTNSVMECVQILGIEAARTTIANEIAEVMGY 894

Query: 1161 HGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRD 1220
              M ID RHM LLAD+MT++GEVLGITRFG+ K   SVL LASFEKTADHLF+A    + 
Sbjct: 895  --MGIDLRHMQLLADVMTYKGEVLGITRFGLSKTRGSVLHLASFEKTADHLFDAVAGMKT 952

Query: 1221 DRIEGVSECIIMGIPMPLGTGILKIRQRDAVPP 1253
            DRIEGVSE II+G  + +GTG  ++ +   + P
Sbjct: 953  DRIEGVSESIILGQTISVGTGGFEVVRYLGIRP 985


>gi|357472537|ref|XP_003606553.1| DNA-directed RNA polymerase [Medicago truncatula]
 gi|355507608|gb|AES88750.1| DNA-directed RNA polymerase [Medicago truncatula]
          Length = 807

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/581 (72%), Positives = 477/581 (82%), Gaps = 24/581 (4%)

Query: 139 NENDITERLKRIIQTNASLQQELVEA--------------------NSAFKSLAGWETLQ 178
           NENDITE+LK+IIQ NA +QQE VE                     +S      G+  LQ
Sbjct: 13  NENDITEKLKKIIQANAIMQQESVETQKYQFAWSCTFICSLLGFSISSRIFQDDGYLMLQ 72

Query: 179 VEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPN 238
            EVAQYINSDV+G P++ Q+++ L+GF+QR+KGKQGRFR NLSGKRVEYTGRTVISPDPN
Sbjct: 73  FEVAQYINSDVKGGPYNPQMSKSLTGFIQRIKGKQGRFRSNLSGKRVEYTGRTVISPDPN 132

Query: 239 LKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGK 298
           LKITEVAIPI MARILTYPERV+ HNIEKLRQC++NGPDKYPGARM++   G +  L   
Sbjct: 133 LKITEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLKEAGGNSWNLRVS 192

Query: 299 FRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNP 358
            R + A ELK G IV+RH+EDGD+V+FNRQPSLHRMS+M HRAR+MPWRTLRFNESVCNP
Sbjct: 193 SRTRRADELKFGDIVERHIEDGDIVIFNRQPSLHRMSMMSHRARVMPWRTLRFNESVCNP 252

Query: 359 YNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK 418
           YNADFDGDEMN+HVPQTEEARTEALLLM VQNNLCTPKNGEILVASTQDFLTSSFLITRK
Sbjct: 253 YNADFDGDEMNLHVPQTEEARTEALLLMTVQNNLCTPKNGEILVASTQDFLTSSFLITRK 312

Query: 419 DTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLT 478
           DTFYDR++FSL+C YMGDGMD +DLPTPAI+KPVELW+GKQLFS+L+RPHAN+RVYVNLT
Sbjct: 313 DTFYDRSSFSLICSYMGDGMDPIDLPTPAIIKPVELWSGKQLFSILLRPHANVRVYVNLT 372

Query: 479 VKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL 538
           VKEK Y +KL     D E   +TMCP+DGFVYFRNSELISGQLGK TLGNGNKDGL+SVL
Sbjct: 373 VKEKNYGSKL----DDREREFKTMCPDDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVL 428

Query: 539 LRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVK 598
           LRDY + A + CMNRLAKLSARWIGNHGFSIGIDDVQPK +L   K + I + Y+ C+  
Sbjct: 429 LRDYKSDAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKDKLIKGKEETIDDGYKKCDGF 488

Query: 599 IKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKG 658
           I+ +N GKL+L PGCDAAQTLE+ I   LN +R+  GK CM +L WRNSPLIMSQCGSKG
Sbjct: 489 IEAFNSGKLELLPGCDAAQTLESKIFGTLNGLRDTTGKVCMKTLHWRNSPLIMSQCGSKG 548

Query: 659 SPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
           SPINI QMVACVGQQSVGG RA NGFIDR+LPHFP+ A  P
Sbjct: 549 SPINICQMVACVGQQSVGGCRATNGFIDRNLPHFPKHANTP 589



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 51/91 (56%), Gaps = 13/91 (14%)

Query: 657 KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
           +G P   +  V  + Q S          +D+   H  R      AKGFV +SF++GLSAT
Sbjct: 688 RGCPFEATCGVQIISQSSFS--------LDKMSVHLSR-----FAKGFVKDSFFTGLSAT 734

Query: 717 EFFFHTMGGREGLVDTAVKTADTGYMSRRLI 747
           EFFFHTMGGREGLVDTAV+ +    + R  I
Sbjct: 735 EFFFHTMGGREGLVDTAVRVSAMVILRRDFI 765


>gi|440795837|gb|ELR16951.1| DNAdirected RNA polymerase subunit A [Acanthamoeba castellanii str.
           Neff]
          Length = 1230

 Score =  866 bits (2238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/840 (51%), Positives = 577/840 (68%), Gaps = 28/840 (3%)

Query: 22  CSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKAAVNV 81
           CST   K  +C   G+  G +K A   L   H  +   + L EF  A+   +     +N 
Sbjct: 82  CSTCGQKVQEC--AGHF-GYIKLA---LPDPHAAADDLQFLGEFDEAVKLDESLAPHLNK 135

Query: 82  ATYILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQ- 137
           A   LNP+ ++ +F R+   D E++ ++ +   P  L++ ++ VPPI IRPSV MD SQ 
Sbjct: 136 AQDDLNPIRIMNIFSRIPPEDLELMDMNGKIANPTHLVLQHLLVPPITIRPSVAMDASQG 195

Query: 138 SNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ 197
           SNE+D+T  L +I+  N +L+ EL + N+  + +  W+ L + VA YINS+  G+P ++ 
Sbjct: 196 SNEDDLTMGLGKILNINNALEAELEKGNNMPQIMEKWDALHINVALYINSETPGIPPTIV 255

Query: 198 VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYP 257
            A+P  G  QRLKGK+GRFRGNLSGKRV+++GRTVISPDPNL+I EVA+P  +A+++TYP
Sbjct: 256 PAKPTRGLCQRLKGKKGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVALPELLAKVMTYP 315

Query: 258 ERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHL 317
           ERV+  NI+K+R+ + NG DK+PGA  I   DG    L    R++ A  L+ G IV+RHL
Sbjct: 316 ERVNAKNIDKMRKLVLNGTDKWPGANGIIPRDGGKLSLKFGDRSRAANNLRIGDIVERHL 375

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
             GDVVLFNRQPSLHR+SIMCHR R+MPWRT RFNE VC PYNADFDGDEMN+HVPQTEE
Sbjct: 376 LHGDVVLFNRQPSLHRISIMCHRVRVMPWRTFRFNECVCGPYNADFDGDEMNVHVPQTEE 435

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
           AR EA+ LM V  NL TP+NGE LVA+TQDFLT+S+L+TRKD F+DRA F  +C +  D 
Sbjct: 436 ARAEAMTLMAVNQNLITPRNGEPLVAATQDFLTASYLVTRKDAFFDRAEFCRLCSFFVDA 495

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
             ++D+P PAI+KP+ELWTGKQLF +L+RP+ N+ V +++ VK + Y+ K     G  E 
Sbjct: 496 DAKIDIPPPAIVKPMELWTGKQLFYILLRPNKNVDVCLSMEVKGREYTGK-----GSYEP 550

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
               MC  DG+V F  SEL+ G + K TLG G+K+ ++ VL+RDY     +  M+RLAK 
Sbjct: 551 LY--MCRKDGYVVFHQSELLCGIMDKKTLGGGSKENIFHVLMRDYSTIVAADRMSRLAKF 608

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
            ARW+ + GFSIGI DV P  +L  +K +LI   Y  C   I EY  GKLQ +PGC+  Q
Sbjct: 609 CARWLADWGFSIGISDVMPSDKLKREKDELIQTAYAECRTLISEYKSGKLQPQPGCNVEQ 668

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           TLEA +  IL+ +RE  G AC+  L   N+PLIM+ CGSKGS INISQM+ACVGQQ+V G
Sbjct: 669 TLEAQLNKILSDVREACGTACINELHPLNAPLIMALCGSKGSNINISQMIACVGQQTVSG 728

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            R P GFI R+LPHF   A++P AKGFV NSF++GL+ TEFFFHTMGGREGLVDTAVKTA
Sbjct: 729 SRVPEGFIHRTLPHFGVNARDPEAKGFVKNSFFTGLTGTEFFFHTMGGREGLVDTAVKTA 788

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGYM RRL+KALEDL++QYD++VRN  G IVQF+YGDDG+DP  MEG+  +P++F R+ 
Sbjct: 789 ETGYMQRRLMKALEDLAVQYDDTVRNCSGGIVQFVYGDDGLDPTGMEGRD-KPVDFSRVA 847

Query: 798 MKVKATCPPAGQRYLSPQQVSEIVEKQLAA----------YGKESCSEAFLNSLRKFFEG 847
           M +KA  P  G+R L+P ++++ V+K L +             ++CS  F++ +R++  G
Sbjct: 848 MHIKAMLPANGERGLTPWEMTQRVDKALNSPMFRGGITQGVRDKACSALFIDDIRRYLLG 907



 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 95/151 (62%), Positives = 115/151 (76%)

Query: 1098 KENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINET 1157
            K +G   +Y LLVEG  L +VM   G+ G +T SNHI EV  TLGIEAAR+ I++EI  T
Sbjct: 1038 KGSGADARYNLLVEGYNLLSVMATPGVVGSRTTSNHIIEVMTTLGIEAARVTIMNEIQYT 1097

Query: 1158 MKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVN 1217
            MK HGM+ID RH+MLLADLM FRGE+LGITR GI KM+ SV+MLASFEKT DHLFNAS +
Sbjct: 1098 MKEHGMNIDTRHVMLLADLMCFRGEILGITRHGIDKMNDSVMMLASFEKTTDHLFNASFH 1157

Query: 1218 GRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
             R D I GVSE IIMGIP+ +GTG+ K+ ++
Sbjct: 1158 ARQDTITGVSESIIMGIPIAVGTGLFKLLRK 1188


>gi|354482229|ref|XP_003503302.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
            [Cricetulus griseus]
          Length = 1280

 Score =  855 bits (2210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/915 (49%), Positives = 602/915 (65%), Gaps = 39/915 (4%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
            ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129  LKRPGLTYLQKRGLKKKISDKCR----KKSTCHYCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58   ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                  V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184  KVVDPVVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111  --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244  AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
               +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304  QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
            +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGPD +PGA  I  
Sbjct: 364  SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQ 423

Query: 286  RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
            R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424  RHMQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483  HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406  QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
            QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543  QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            +++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603  IILRPSDDSPVRANLRTKGKQYCGK-----------GEDLCVNDSYVTIQNSELMSGSMD 651

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652  KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 712  AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772  DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
             FVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR
Sbjct: 832  EFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +  LS  +++   E
Sbjct: 892  SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVYPCQSEPALSKNELTLTTE 950

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
              +       C ++FL  ++ F +G  +K+ K     +  G +D       V ++   IT
Sbjct: 951  AIMKKNEFLCCQDSFLQEIKTFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007

Query: 883  EKQLEVFIQTCFSRY 897
              Q+E F++TC  +Y
Sbjct: 1008 PTQIEKFLETCRDKY 1022



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 81/99 (81%), Gaps = 5/99 (5%)

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            +V++TLGIEAAR  II+EI  TM  HGMSI++RH+MLL+DLMT++GEVLGITRFG+ KM 
Sbjct: 1170 QVEKTLGIEAARTTIINEIQYTMFNHGMSINRRHVMLLSDLMTYKGEVLGITRFGLAKMK 1229

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGI 1234
            +SVLMLASFEKTADHLF+A+  G+ D +     C++ GI
Sbjct: 1230 ESVLMLASFEKTADHLFDAAYFGQKDSV-----CVVFGI 1263


>gi|316997021|dbj|BAJ52638.1| RNA polymerase III largest subunit [Monosiga ovata]
          Length = 931

 Score =  845 bits (2184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/928 (47%), Positives = 609/928 (65%), Gaps = 59/928 (6%)

Query: 369  NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 428
            N+HVPQTE AR EAL+LMG ++N+CTP+NG+ L+A+TQDFLT +FL++ +DT + R  F 
Sbjct: 1    NIHVPQTETARAEALVLMGTKSNICTPRNGDPLIAATQDFLTGAFLLSLRDTLFTRQRFC 60

Query: 429  LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHAN------MRVYVNLTVKEK 482
             +  Y+ +G   V LP P I+KPV++W+GKQL S+L+RP             +NL  + K
Sbjct: 61   QLATYLTEGRTFVKLPPPCIVKPVQMWSGKQLLSLLLRPVVAPGQPLPRNNCINLETQTK 120

Query: 483  TYSNKLIRTEGDEEIRIE-------TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLY 535
            +YS+  I    D    +        +MCP DG++  RNSEL+ G L K+ LG+G+K  ++
Sbjct: 121  SYSDSKISLSPDAPDAVAQYSKPVLSMCPEDGYLVIRNSELLCGVLDKSVLGSGSKTTIF 180

Query: 536  SVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVC 595
             VLLRD G  A +  M+RLAK+++ ++ N GFSIGI DV+P   L + K  L+   Y+ C
Sbjct: 181  YVLLRDCGEQAAADAMSRLAKVASFFLMNRGFSIGITDVRPSATLLETKEGLVRAGYQKC 240

Query: 596  NVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCG 655
               +++Y  G+LQ +PGC+A QTLE V+T  LN IRE +GKAC   LP  N+PLIM++CG
Sbjct: 241  EDFVQQYKAGQLQTQPGCNAEQTLENVMTKELNSIRESSGKACNSDLPRSNAPLIMAKCG 300

Query: 656  SKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSA 715
            SKGS +N+SQM+ACVGQQ+VGG R P+GF +R+LPHF R  + PAAKGFV NSFY+GL+ 
Sbjct: 301  SKGSLLNLSQMIACVGQQTVGGSRIPDGFEERTLPHFGRLDRHPAAKGFVRNSFYTGLTP 360

Query: 716  TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGD 775
            TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+KALEDLS  YD SVR + G ++QF YGD
Sbjct: 361  TEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDLSVRTSVGAVIQFRYGD 420

Query: 776  DGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE-----IVEKQLAAYGK 830
            DG+DP  MEG S  P+ +D     V  + P  G++ L P Q+ E     I     A + +
Sbjct: 421  DGLDPVEMEGDSA-PIKWDHTFAHVINSTPSNGEQGLLPYQIEEAYADIIRTPMFAFFHR 479

Query: 831  ESCSEA----FLNSLRKFFEGQQDKLDKKIKFVEDI-------GW---DD--------KS 868
            +  +EA    F+  LR F       L KK  F+  +       G+   DD        + 
Sbjct: 480  QRPAEAAEHIFITQLRDF-------LHKKAAFLAGLRARMGVPGFRTADDSIGTLPAGEQ 532

Query: 869  QILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTF 928
              + E   +   +TE QL++F Q C  +Y+   +EAGTA+GA+  QS+GEP TQMTLKTF
Sbjct: 533  PAIAEAVEQIFRLTEAQLQLFCQACCDKYQRACIEAGTAVGAVCGQSLGEPTTQMTLKTF 592

Query: 929  HFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQV 988
            HF+G+ASMNIT GVPRIKEIIN  K  STPIITA LE      +A++VK RIEKTLLG++
Sbjct: 593  HFSGIASMNITLGVPRIKEIINAVKNTSTPIITAVLEPGSTAMSAQIVKSRIEKTLLGEI 652

Query: 989  AKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQ-TPKIKLKQQHIKVLDFR 1047
               I+ V+T     +++ LDM  +    L ++   V+ +I++   K+KLK+Q++ V+   
Sbjct: 653  MDYIEEVLTPSGCYVLVKLDMARVHKLQLEVDVHTVETAILERCGKLKLKRQNVWVMRGN 712

Query: 1048 KLEIFPPV-DKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKY 1106
            K+ + PP   KS  +F L  LK  LP V+++G+  + R V+       +KV E G +  +
Sbjct: 713  KIAVSPPSQSKSNAYFVLQQLKAELPHVVIRGVDRISRAVV-------QKVDEKG-RAVF 764

Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
            ++L EG  L  VMG  G+ G +  SNHI +V++TLGIEAAR  II E+ +T+  +G+SID
Sbjct: 765  KVLAEGDNLLHVMGTRGVLGTRVTSNHILDVERTLGIEAARATIISEVGQTVAPYGVSID 824

Query: 1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
             RH+ +LADLMT RGEVLGITRFGI KM++ VLMLASFEKT D LF+A+V+G  D I+GV
Sbjct: 825  WRHLSILADLMTSRGEVLGITRFGIAKMNERVLMLASFEKTNDILFDAAVHGLKDDIDGV 884

Query: 1227 SECIIMGIPMPLGTGILKI-RQRDAVPP 1253
            SECII+G+P+ LGTG+  + R+ D + P
Sbjct: 885  SECIILGVPISLGTGLFSLMRRADNIQP 912


>gi|145492039|ref|XP_001432018.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399125|emb|CAK64620.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1360

 Score =  840 bits (2170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1169 (41%), Positives = 674/1169 (57%), Gaps = 84/1169 (7%)

Query: 115  LIITNIAVPPIAIRPS-VIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAG 173
            L+ + I  PP  IRPS ++ + ++++E+D+T +LK I+  N  LQ+++ E       L  
Sbjct: 214  LLTSIIPAPPNNIRPSKMLSNTTKADEDDLTMKLKTILYHNDLLQKQIKEGKDGMSILKT 273

Query: 174  WETLQVEVAQYINSDVRGVP-FSMQVAR-PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRT 231
                Q     Y NS+   +P FS +  +  + G  QRLKGK+GR RGNLSGKR E+T R+
Sbjct: 274  QFLTQAHYFHYFNSETPRLPQFSSKDGKVDIRGIYQRLKGKRGRLRGNLSGKRAEFTARS 333

Query: 232  VISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGT 291
            VISPDPNL I +V IP  +A ILT PE V+  NI+K+R  +QNGP  YPGA+ ++     
Sbjct: 334  VISPDPNLAIDQVTIPQHIACILTVPETVTALNIKKMRDYVQNGPSIYPGAKFVKLGGVN 393

Query: 292  ARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRF 351
              + + + R  LA +LK G +VDRHL   D+V+FNRQPSLHR+S+M  RAR+  W TLRF
Sbjct: 394  YNLQFAR-RAHLAYKLKIGDVVDRHLLSEDIVIFNRQPSLHRISMMAFRARVDKWHTLRF 452

Query: 352  NESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTS 411
            NE VC P+NADFDGDEMN+H+PQT EAR+EAL+LM V+ NL T K+GE LV   QDFLT+
Sbjct: 453  NECVCTPFNADFDGDEMNIHLPQTYEARSEALILMDVKKNLKTIKSGESLVCLLQDFLTT 512

Query: 412  SFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANM 471
            ++LIT KD FY R  F   C    D  +++DLP P ILKP +LWTGKQ+ + L+ P+   
Sbjct: 513  AWLITNKDVFYSREQFMQFCAAFSDSNEQIDLPAPTILKPKQLWTGKQVINALLVPNRKT 572

Query: 472  RVYVNLTVKE-KTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGN 530
            R+ +NL  KE   +  KL     D         P DG+V F   EL+ G +GK  LG  +
Sbjct: 573  RLVLNLEAKESNAFKGKLDYLWMD---------PGDGYVVFDKCELVCGNIGKKVLG-AS 622

Query: 531  KDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISE 590
            K GL+  L+RD      +  M R AKLS+RWI ++G +IGI DV   K L ++  +   +
Sbjct: 623  KLGLFYALIRDNSTQIAASVMQRFAKLSSRWISHYGMTIGIGDVMAPKSLIEQIHQSTEQ 682

Query: 591  NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLI 650
            +Y  C    K Y    +   PG    QTLEA +   L+ +RE  G  C   L   N  LI
Sbjct: 683  SYLQC----KHYQRSLIDADPGLTVEQTLEAKVNKTLSDVREQVGSKCQEQLKSDNKVLI 738

Query: 651  MSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFY 710
            M  CG+KGS +N++QM+ CVGQQ + G+R P GF  R+LPHF      P AKGFV NSFY
Sbjct: 739  MYLCGAKGSNVNVAQMIGCVGQQVISGKRVPEGFTGRTLPHFKDYILHPKAKGFVKNSFY 798

Query: 711  SGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC-IV 769
            +G+ A EF+FH M GREGL DTAVKTA TGYM RRL+K LEDL I YD +VR+     IV
Sbjct: 799  TGMDAIEFYFHNMAGREGLTDTAVKTATTGYMQRRLVKMLEDLHIAYDLTVRSCDTKEIV 858

Query: 770  QFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG 829
            QF YG+DG+DP  +E  + E +    LL     T     Q  L+ + +   +++      
Sbjct: 859  QFRYGEDGLDPLAVED-ANEVIKLQNLLTN-SFTVLRKNQILLNKEHMLIKLDELFMIIE 916

Query: 830  KESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVF 889
            +           +KF E  +   +K+ K V+ +      Q           ++EKQL+ F
Sbjct: 917  ERH---------KKFLENYEATYEKEKKRVQALFKSTNQQ-----------VSEKQLQWF 956

Query: 890  IQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII 949
            I++   R+    +  GT++G I +QSIGEP TQMTLKTFH AGVA M+ITQGVPR+ EII
Sbjct: 957  IRSWMERFLTMVMAPGTSVGPITSQSIGEPATQMTLKTFHSAGVAGMSITQGVPRLNEII 1016

Query: 950  NGAKRISTPIITAEL---ECNDN------------ENAARV----------VKGRIEKTL 984
            N +K I TP I  +L   +  D+            E A R           V  +IE+T 
Sbjct: 1017 NASKEIKTPQINVKLINRQVMDHAKQFAKSGDPQYEYAHRAVIHSAQQAQDVNIQIEQTK 1076

Query: 985  LGQVAKSIKIVMTSRLASIVIALD--------METIQDAHLCINADIVKESIVQTPKIKL 1036
            L Q+ K +  + T+    I + LD        +E +   ++C  A I+KE  +    +K 
Sbjct: 1077 LMQILKKMDEIYTADNCYIELELDCHCLARLKLEFVTPKYVC--ALILKELKLSPDDVKY 1134

Query: 1037 KQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRK 1096
                +K++     +         + F +  L+  L  + + G   +++ VI   +K+   
Sbjct: 1135 D---LKIIRITVKKSSKKKQSENLLFLIKELQRKLLRLHIYGCANIKQTVIQVTDKDD-- 1189

Query: 1097 VKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINE 1156
             KEN  K + RL   G G + ++  + ID  +T SNHI E+Q  LGIEAAR  I++E+  
Sbjct: 1190 -KEN-VKGEARLFASGIGFKEILRLDNIDWKRTVSNHIMEIQSALGIEAARQSIVNEVYT 1247

Query: 1157 TMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASV 1216
            TM++H +SID RH++LLA+LMTF+G +LG TR GI ++  S LMLASFEKT D  FNA++
Sbjct: 1248 TMQSHSISIDIRHILLLAELMTFKGRILGFTRQGIDQLKNSALMLASFEKTMDVFFNAAI 1307

Query: 1217 NGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             G+ D + G S+ +I+G  +P GTG+  +
Sbjct: 1308 QGKQDSMNGASQRVIIGQNVPQGTGMFDL 1336


>gi|74830400|emb|CAI39062.1| DNA-directed RNA polymerase III largest subunit [Paramecium
            tetraurelia]
          Length = 1368

 Score =  833 bits (2151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1177 (41%), Positives = 674/1177 (57%), Gaps = 92/1177 (7%)

Query: 115  LIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAG 173
            L+ + I  PP  IRPS ++ + ++++E+D+T +LK I+  N  LQ+++ E       L  
Sbjct: 214  LLTSIIPAPPNNIRPSKMLSNTTKADEDDLTMKLKTILYHNDLLQKQIKEGKDGMSILKT 273

Query: 174  WETLQVEVAQYINSDVRGVP-FSMQVAR-PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRT 231
                Q     Y NS+   +P FS +  +  + G  QRLKGK+GR RGNLSGKR E+T R+
Sbjct: 274  QFLTQAHYFHYFNSETPRLPQFSSKDGKVDIRGIYQRLKGKRGRLRGNLSGKRAEFTARS 333

Query: 232  VISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGT 291
            VISPDPNL I +V IP  +A ILT PE V+  NI+K+R  +QNGP  YPGA+ ++     
Sbjct: 334  VISPDPNLAIDQVTIPQHIACILTVPETVTALNIKKMRDYVQNGPSIYPGAKFVKLGGVN 393

Query: 292  ARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRF 351
              + + + R  LA +LK G +VDRHL   D+V+FNRQPSLHR+S+M  RAR+  W TLRF
Sbjct: 394  YNLQFAR-RAHLAYKLKIGDVVDRHLLSEDIVIFNRQPSLHRISMMAFRARVDKWHTLRF 452

Query: 352  NESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTS 411
            NE VC P+NADFDGDEMN+H+PQT EAR+EAL+LM V+ NL T K+GE LV   QDFLT+
Sbjct: 453  NECVCTPFNADFDGDEMNIHLPQTYEARSEALILMDVKKNLKTIKSGESLVCLLQDFLTT 512

Query: 412  SFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANM 471
            ++LIT KD FY R  F   C    D  +++DLP P ILKP +LWTGKQ+ + L+ P+   
Sbjct: 513  AWLITNKDVFYSREQFMQFCAAFSDSNEQIDLPAPTILKPKQLWTGKQVINALLVPNRKT 572

Query: 472  RVYVNLTVKE-KTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGN 530
            R+ +NL  KE   +  KL     D         P DG+V F   EL+ G +GK  LG  +
Sbjct: 573  RLVLNLEAKESNAFKGKLDYLWMD---------PGDGYVVFDKCELVCGNIGKKVLG-AS 622

Query: 531  KDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISE 590
            K GL+  L+RD      +  M R AKLS+RWI ++G +IGI DV   K L ++  +   +
Sbjct: 623  KLGLFYALIRDNSTQIAASVMQRFAKLSSRWISHYGMTIGIGDVMAPKSLIEQIHQSTEQ 682

Query: 591  NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLI 650
            +Y  C    K Y    +   PG    QTLEA +   L+ +RE  G  C   L   N  LI
Sbjct: 683  SYLQC----KHYQRSLIDADPGLTVEQTLEAKVNKTLSDVREQVGSKCQEQLKSDNKVLI 738

Query: 651  MSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAK--------EPAAK 702
            M  CG+KGS +N++QM+ CVGQQ + G+R P GF  R+LPHF              P AK
Sbjct: 739  MYLCGAKGSNVNVAQMIGCVGQQVISGKRVPEGFTGRTLPHFKDCGDRYPNLDILHPKAK 798

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFV NSFY+G+ A EF+FH M GREGL DTAVKTA TGYM RRL+K LEDL I YD +VR
Sbjct: 799  GFVKNSFYTGMDAIEFYFHNMAGREGLTDTAVKTATTGYMQRRLVKMLEDLHIAYDLTVR 858

Query: 763  NAGGC-IVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIV 821
            +     IVQF YG+DG+DP  +E  + E +    LL     T     Q  L+ + +   +
Sbjct: 859  SCDTKEIVQFRYGEDGLDPLAVED-ANEVIKLQNLLTN-SFTVLRKNQILLNKEHMLIKL 916

Query: 822  EKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGI 881
            ++      +           +KF E  +   +K+ K V+ +      Q           +
Sbjct: 917  DELFMIIEERH---------KKFLENYEATYEKEKKRVQALFKSTNQQ-----------V 956

Query: 882  TEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQG 941
            +EKQL+ FI++   R+    +  GT++G I +QSIGEP TQMTLKTFH AGVA M+ITQG
Sbjct: 957  SEKQLQWFIRSWMERFLTMVMAPGTSVGPITSQSIGEPATQMTLKTFHSAGVAGMSITQG 1016

Query: 942  VPRIKEIINGAKRISTPIITAEL---ECNDN------------ENAARV----------V 976
            VPR+ EIIN +K I TP I  +L   +  D+            E A R           V
Sbjct: 1017 VPRLNEIINASKEIKTPQINVKLINRQVMDHAKQFAKSGDPQYEYAHRAVIHSAQQAQDV 1076

Query: 977  KGRIEKTLLGQVAKSIKIVMTSRLASIVIALD--------METIQDAHLCINADIVKESI 1028
              +IE+T L Q+ K +  + T+    I + LD        +E +   ++C  A I+KE  
Sbjct: 1077 NIQIEQTKLMQILKKMDEIYTADNCYIELELDCHCLARLKLEFVTPKYVC--ALILKELK 1134

Query: 1029 VQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIA 1088
            +    +K     +K++     +         + F +  L+  L  + + G   +++ VI 
Sbjct: 1135 LSPDDVKYD---LKIIRITVKKSSKKKQSENLLFLIKELQRKLLRLHIYGCANIKQTVIQ 1191

Query: 1089 EKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARI 1148
              +K+    KEN  K + RL   G G + ++  + ID  +T SNHI E+Q  LGIEAAR 
Sbjct: 1192 VTDKDD---KEN-VKGEARLFASGIGFKEILRLDNIDWKRTVSNHIMEIQSALGIEAARQ 1247

Query: 1149 CIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTA 1208
             I++E+  TM++H +SID RH++LLA+LMTF+G +LG TR GI ++  S LMLASFEKT 
Sbjct: 1248 SIVNEVYTTMQSHSISIDIRHILLLAELMTFKGRILGFTRQGIDQLKNSALMLASFEKTM 1307

Query: 1209 DHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            D  FNA++ G+ D + G S+ +I+G  +P GTG+  +
Sbjct: 1308 DVFFNAAIQGKQDSMNGASQRVIIGQNVPQGTGMFDL 1344


>gi|145509313|ref|XP_001440599.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407819|emb|CAK73202.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1353

 Score =  821 bits (2120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/1168 (40%), Positives = 665/1168 (56%), Gaps = 89/1168 (7%)

Query: 115  LIITNIAVPPIAIRPS-VIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAG 173
            L+ + I  PP  IRPS ++ + ++++E+D+T +LK I+  N  LQ+++ E       L  
Sbjct: 214  LLTSIIPAPPNNIRPSKMLSNTTKADEDDLTMKLKTILYHNDLLQKQIKEGKDGMSILKT 273

Query: 174  WETLQVEVAQYINSDVRGVP-FSMQVAR-PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRT 231
                Q     Y NS+   +P FS +  +  + G  QRLKGK+GR RGNLSGKR E+T R+
Sbjct: 274  QFLTQAHYFHYFNSETPRLPQFSSKDGKVDIRGIYQRLKGKRGRLRGNLSGKRAEFTARS 333

Query: 232  VISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGT 291
            VISPDPNL I +V IP  +A ILT PE V+  NI+K+R  +QNGP  YPGA+ ++     
Sbjct: 334  VISPDPNLAIDQVTIPQHIACILTVPETVTALNIKKMRDYVQNGPSIYPGAKFVKLGGVN 393

Query: 292  ARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRF 351
              + + + R  LA +LK G +VDRHL   D+V+FNRQPSLHR+S+M  RAR+  W TLRF
Sbjct: 394  YNLQFAR-RAHLAYKLKIGDVVDRHLLSEDIVIFNRQPSLHRISMMAFRARVDKWHTLRF 452

Query: 352  NESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTS 411
            NE VC P+NADFDGDEMN+H+PQT EAR+EAL+LM V+ NL T K+GE LV   QDFLT+
Sbjct: 453  NECVCTPFNADFDGDEMNIHLPQTYEARSEALILMDVKKNLKTIKSGESLVCLLQDFLTT 512

Query: 412  SFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANM 471
            ++LIT KD FY R  F   C    D  +++DLP P ILKP +LWTGKQ+ + L+ P+   
Sbjct: 513  AWLITNKDVFYSREQFMQFCAAFSDSNEQIDLPAPTILKPKQLWTGKQVINALLVPNRKT 572

Query: 472  RVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNK 531
            R+ V               T   E   I         V F   EL+ G +GK  LG  +K
Sbjct: 573  RLKV---------------THLKESWTICGWTLVMASVVFDKCELVCGNIGKKVLG-ASK 616

Query: 532  DGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISEN 591
             GL+  L+RD      +  M R AKLS+RWI ++G +IGI DV   K L ++  +   ++
Sbjct: 617  LGLFYALIRDNSTQIAASVMQRFAKLSSRWISHYGMTIGIGDVMAPKSLIEQIHQSTEQS 676

Query: 592  YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIM 651
            Y  C    K Y    +   PG    QTLEA +   L+ +RE  G  C   L   N  LIM
Sbjct: 677  YLQC----KHYQRSLIDADPGLTVEQTLEAKVNKTLSDVREQVGSKCQEQLKSDNKVLIM 732

Query: 652  SQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYS 711
              CG+KGS +N++QM+ CVGQQ + G+R P GF  R+LPHF      P AKGFV NSFY+
Sbjct: 733  YLCGAKGSNVNVAQMIGCVGQQVISGKRVPEGFTGRTLPHFKDYILHPKAKGFVKNSFYT 792

Query: 712  GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC-IVQ 770
            G+ A EF+FH M GREGL DTAVKTA TGYM RRL+K LEDL I YD +VR+     IVQ
Sbjct: 793  GMDAIEFYFHNMAGREGLTDTAVKTATTGYMQRRLVKMLEDLHIAYDLTVRSCDTKEIVQ 852

Query: 771  FLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGK 830
            F YG+DG+DP  +E  + E +    LL     T     Q  L+ + +   +++      +
Sbjct: 853  FRYGEDGLDPLAVED-ANEVIKLQNLLTN-SFTVLRKNQILLNKEHMLIKLDELFMIIEE 910

Query: 831  ESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFI 890
                       +KF E  +   +K+ K V+ +      Q           ++EKQL+ FI
Sbjct: 911  RH---------KKFLENYEATYEKEKKRVQALFKSTNQQ-----------VSEKQLQWFI 950

Query: 891  QTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN 950
            ++   R+    +  GT++G I +QSIGEP TQMTLKTFH AGVA M+ITQGVPR+ EIIN
Sbjct: 951  RSWMERFLTMVMAPGTSVGPITSQSIGEPATQMTLKTFHSAGVAGMSITQGVPRLNEIIN 1010

Query: 951  GAKRISTPIITAEL---ECNDN------------ENAARV----------VKGRIEKTLL 985
             +K I TP I  +L   +  D+            E A R           V  +IE+T L
Sbjct: 1011 ASKEIKTPQINVKLINRQVMDHAKQFAKSGDPQYEYAHRAVIHSAQQAQDVNIQIEQTKL 1070

Query: 986  GQVAKSIKIVMTSRLASIVIALD--------METIQDAHLCINADIVKESIVQTPKIKLK 1037
             Q+ K +  + T+    I + LD        +E +   ++C  A I+KE  +    +K  
Sbjct: 1071 MQILKKMDEIYTADNCYIELELDCHCLARLKLEFVTPKYVC--ALILKELKLSPDDVKYD 1128

Query: 1038 QQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKV 1097
               +K++     +         + F +  L+  L  + + G   +++ VI   +K+    
Sbjct: 1129 ---LKIIRITVKKSSKKKQSENLLFLIKELQRKLLRLHIYGCANIKQTVIQVTDKDD--- 1182

Query: 1098 KENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINET 1157
            KEN  K + RL   G G + ++  + ID  +T SNHI E+Q  LGIEAAR  I++E+  T
Sbjct: 1183 KEN-VKGEARLFASGIGFKEILRLDNIDWKRTVSNHIMEIQSALGIEAARQSIVNEVYTT 1241

Query: 1158 MKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVN 1217
            M++H +SID RH++LLA+LMTF+G +LG TR GI ++  S LMLASFEKT D  FNA++ 
Sbjct: 1242 MQSHSISIDIRHILLLAELMTFKGRILGFTRQGIDQLKNSALMLASFEKTMDVFFNAAIQ 1301

Query: 1218 GRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            G+ D + G S+ +I+G  +P GTG+  +
Sbjct: 1302 GKQDSMNGASQRVIIGQNVPQGTGMFDL 1329


>gi|367030511|ref|XP_003664539.1| hypothetical protein MYCTH_2307483 [Myceliophthora thermophila ATCC
           42464]
 gi|347011809|gb|AEO59294.1| hypothetical protein MYCTH_2307483 [Myceliophthora thermophila ATCC
           42464]
          Length = 1555

 Score =  812 bits (2098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/842 (48%), Positives = 566/842 (67%), Gaps = 38/842 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----- 55
           +R P ++ LR++ ++K I ++C     KA  CP CG I G+++K ++V+ ++HD+     
Sbjct: 138 LRRPGIDNLRRSAILKKINEQCR----KARTCPHCGSIQGVIRK-LSVMKLVHDKFSAYN 192

Query: 56  -----------SKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
                      SKV E    F  A  +T E +     A   LNP+ VL LFK+++ TDCE
Sbjct: 193 KSTAQKKIPPESKV-EFDASFEQAKKYTPELEKHTKKAMEDLNPLRVLNLFKQISPTDCE 251

Query: 105 VLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
           +L L     RPE  +   +  PPI IRPSV  + + SNE+DIT +L  II     L++ L
Sbjct: 252 LLGLDPSEGRPEMFLWQYVPAPPICIRPSVAQENA-SNEDDITSKLSEIILYAGHLRESL 310

Query: 162 VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
            +  +    +  WE LQ++V  Y+NSDV G+ +     +P+ GF QRLKGKQGRFRGNLS
Sbjct: 311 KKGVALPVIMEQWEFLQLQVGMYVNSDVPGL-YQPGFGKPIRGFCQRLKGKQGRFRGNLS 369

Query: 222 GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
           GKRV+++GRTVISPDPNL I +VA+P  +A+ LTYPERV+  NIEKLR+ + NGP+ +PG
Sbjct: 370 GKRVDFSGRTVISPDPNLSIEQVAVPQLVAKNLTYPERVNHANIEKLRERVINGPNIWPG 429

Query: 282 ARMIRYPDGTA---RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMC 338
           A+ I   DG     ++     R + A  L+ G +V+RHLED D+VLFNRQPSLH++SIM 
Sbjct: 430 AQGIIKKDGAKYNLKIGTESLRQKHASSLEFGDVVERHLEDNDIVLFNRQPSLHKLSIMS 489

Query: 339 HRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNG 398
           H  ++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNG
Sbjct: 490 HLVKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLITPKNG 549

Query: 399 EILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGK 458
           E ++A+TQDF+T+++L++ KD F+DR +F+ +C  M  G   ++LP PAILKP  LWTGK
Sbjct: 550 EPIIAATQDFITAAYLLSSKDRFFDRTSFTYICTQMLLGDTHLELPPPAILKPRALWTGK 609

Query: 459 QLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELIS 518
           Q+F+VL+RP+    V VNL  K K Y  K       ++ +I  M  +D F+  RNSE++ 
Sbjct: 610 QIFNVLMRPNKESPVLVNLDAKNKVYKPK-------KDGQIPDMDIDDSFLVVRNSEVMC 662

Query: 519 GQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKK 578
           G++ K+T+G G K+ ++ V+LRD+G    +  MNRLAKL AR +   GFSIG+ DV P  
Sbjct: 663 GRMDKSTVGGGKKNSVFYVILRDFGPDHAAAAMNRLAKLCARTLTLRGFSIGVGDVWPST 722

Query: 579 ELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKAC 638
            L+  K +L+ E Y+ C+  I+ Y +GKL+  PGC+  +TLE  I+ IL+++R+ AG  C
Sbjct: 723 SLTKHKARLVEEAYKKCDDLIETYRQGKLEKAPGCNLEETLENSISGILSKVRQQAGDYC 782

Query: 639 MGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKE 698
           + +L   N+PLIM++ GSKGS IN++QMVACVGQQ +GG+R P+GF DRSLPHF + A++
Sbjct: 783 VNNLSNNNAPLIMAKSGSKGSDINVAQMVACVGQQIIGGKRVPDGFQDRSLPHFHKNARQ 842

Query: 699 PAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYD 758
           P +KGFV NSFY+GL  TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD
Sbjct: 843 PPSKGFVRNSFYTGLVPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYD 902

Query: 759 NSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVS 818
           ++VR + G IVQF YG D +DP +MEG   +P++F R     ++         L P+++ 
Sbjct: 903 DTVRTSEGGIVQFQYGADRLDPVDMEG-DAKPVDFARTWNHAQSITWSNSDTSLLPREIH 961

Query: 819 EI 820
            +
Sbjct: 962 AL 963



 Score =  325 bits (832), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 185/407 (45%), Positives = 246/407 (60%), Gaps = 51/407 (12%)

Query: 877  KTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 936
            + + ++E+ L  FIQ C  +Y+  RVE G A+GA+GAQSIGEPGTQMTLKTFHFAGVA M
Sbjct: 1113 RVAKVSERTLRQFIQMCLHKYKKARVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGM 1172

Query: 937  NITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVM 996
            +ITQGVPRIKEIIN +K ISTP+IT ELE   +  AARVVKGRIEKT +  V   I    
Sbjct: 1173 SITQGVPRIKEIINASKLISTPVITCELENKVDLKAARVVKGRIEKTYISDVISYIDDEW 1232

Query: 997  TSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR----KLEIF 1052
               +A IV+ +D++ + D  L I    + ++IV+  K+KLK   ++  D R    ++E+ 
Sbjct: 1233 LPDVAKIVLQVDLQALSDMQLGITMKDIADAIVRAKKLKLK---VEPDDLRIGGDRVEVI 1289

Query: 1053 -----------------------------PPVDKSKIHFELYS--LKNVLPMVIVKGIKT 1081
                                           +D+S   F+L    LK +LP V + G   
Sbjct: 1290 IRNTWQDATAARKAARVRAAAIEKGHFISSTLDESAADFQLRVNFLKRMLPQVAISGYPE 1349

Query: 1082 VERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTL 1141
              R +I           +  EK ++++LVEG GL+A M  EG+ G K  +N + E +  L
Sbjct: 1350 ASRAII-----------QTSEKNEHKVLVEGYGLRACMTTEGVIGTKCVTNSVMECRDVL 1398

Query: 1142 GIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLML 1201
            GIEAAR  I  EI   M+   M+ID RHM LLAD+MT++GE+LGITRFG+ KM  SVL L
Sbjct: 1399 GIEAARATIATEIGSVMRE--MNIDPRHMELLADVMTYKGEILGITRFGLAKMRDSVLQL 1456

Query: 1202 ASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            ASFEKT DHLF+A+   + DRI+GVSECIIMG  M +GTG  ++ +R
Sbjct: 1457 ASFEKTPDHLFDAAAGMKKDRIQGVSECIIMGQSMSIGTGAFQVVRR 1503


>gi|340939410|gb|EGS20032.1| RNA polymerase-like protein [Chaetomium thermophilum var.
           thermophilum DSM 1495]
          Length = 1541

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/847 (48%), Positives = 568/847 (67%), Gaps = 38/847 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----- 55
           +R P ++ LR+  ++K I ++C     K  +CP CG I G+++K ++V+ ++HD+     
Sbjct: 137 LRRPGIDNLRRAAILKKINEQCR----KVKQCPYCGEIQGVIRK-LSVMKLVHDKYAAYN 191

Query: 56  -----------SKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
                      SKV E    F +A  +T E +     A   LNP+ VL LFKR++ TDCE
Sbjct: 192 KSTAQKKIAPESKV-EFDASFENAKKYTPELEKHTKKAMDDLNPLKVLNLFKRISPTDCE 250

Query: 105 VLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
           +L L     RPE  +   I  PPI IRPSV  + + SNE+DIT +L  II     L++ L
Sbjct: 251 LLGLDPTEGRPEMFLWQYIPAPPICIRPSVAQENA-SNEDDITSKLSEIILYAGHLRESL 309

Query: 162 VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
            +  S    +  WE LQ++V  Y+NSDV G+       +P+ GF QRLKGKQGRFRGNLS
Sbjct: 310 KKGVSLPVIMEQWEFLQLQVGMYVNSDVPGLN-QPGFGKPIRGFCQRLKGKQGRFRGNLS 368

Query: 222 GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
           GKRV+++GRTVISPDPNL I +VA+P  +A+ LTYPERV+  NIEKLRQ + NGP+ +PG
Sbjct: 369 GKRVDFSGRTVISPDPNLSIEQVAVPQLVAKNLTYPERVNHANIEKLRQRVINGPNNWPG 428

Query: 282 ARMIRYPDGTA---RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMC 338
           A  I   DG     ++     R + A +L+ G IV+RHLED D+VLFNRQPSLH++SIM 
Sbjct: 429 AMGIIKKDGAKFNLKIGTEALRERHANDLQFGDIVERHLEDNDIVLFNRQPSLHKLSIMS 488

Query: 339 HRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNG 398
           H  ++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV++NL TPKNG
Sbjct: 489 HLVKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLITPKNG 548

Query: 399 EILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGK 458
           E ++A+TQDF+T+++L++ KD F+DR  F+ +C  M  G   +DLP PAI+KP  LWTGK
Sbjct: 549 EPIIAATQDFITAAYLLSSKDKFFDRETFTYICTQMLLGETHLDLPPPAIMKPRCLWTGK 608

Query: 459 QLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELIS 518
           Q+F+VL+RP+    V VNL  K K +S K      D +I       +D F+  RNSE++ 
Sbjct: 609 QIFNVLMRPNKECPVLVNLDAKNKVFSKKKDGHPPDMDI-------DDAFLVVRNSEVMC 661

Query: 519 GQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKK 578
           G++ KAT+G G K+ ++ V+LRDYG    +  MNRLAKL AR +   GFSIG+ DV P  
Sbjct: 662 GRMDKATVGGGKKNSVFYVILRDYGPDYAAAAMNRLAKLCARMLTLRGFSIGVGDVWPSG 721

Query: 579 ELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKAC 638
            L+  K KL+ + Y+ C+  I+ Y +GKL+  PGC   +TLE +I+ IL+++R+ AG  C
Sbjct: 722 PLTAHKAKLVEDAYKRCDELIETYRQGKLEKAPGCSMEETLENMISGILSQVRQQAGNYC 781

Query: 639 MGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKE 698
           + SL   N+PLIM++ GSKGS IN++QM+ACVGQQ + G+R P+GF DRSLPHF + A++
Sbjct: 782 VDSLSNNNAPLIMAKSGSKGSDINVAQMIACVGQQIISGKRVPDGFQDRSLPHFHKNARQ 841

Query: 699 PAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYD 758
           P +KGFV NSFY+GL+ +EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD
Sbjct: 842 PPSKGFVRNSFYTGLTPSEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYD 901

Query: 759 NSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVS 818
           ++VR + G +VQF YG D +DP +MEG + +P++F R     ++      +  L P+++ 
Sbjct: 902 DTVRTSEGNVVQFQYGADRLDPVDMEGDA-KPVDFARTWNHAQSITWDNKEPGLLPREIQ 960

Query: 819 EIVEKQL 825
            + ++ L
Sbjct: 961 RLCKEIL 967



 Score =  303 bits (775), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 179/404 (44%), Positives = 238/404 (58%), Gaps = 44/404 (10%)

Query: 877  KTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 936
            + + ++E+ L  FIQ C  +Y+  RVE G A+GA+GAQSIGEPGTQMTLKTFHFAGVA M
Sbjct: 1103 RVAKVSERTLRQFIQMCLHKYKKARVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGM 1162

Query: 937  NITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVM 996
            +ITQGVPRIKEIIN +K ISTP+IT +LE   +  AARVVK RIEKT +  V   I    
Sbjct: 1163 SITQGVPRIKEIINASKLISTPVITCKLENKVDIKAARVVKARIEKTYISDVISYIDDEW 1222

Query: 997  TSRLASIVIALDMETIQDAHLCINADIVKESI---------VQTPKIKLKQQHIKVL--- 1044
               +A IV+ +D++ + D  L I    + ++I         V+   +++    ++V+   
Sbjct: 1223 LPDVAKIVLQVDLQAVADMQLGITIKDIADAIVKNKKLKLKVEPDDLRVGHDRVEVIVRN 1282

Query: 1045 -----------------DFRKLEIFP-PVDKSKIHFELYS--LKNVLPMVIVKGIKTVER 1084
                                K    P  +D+S   F+L    LK +LP V + G     R
Sbjct: 1283 TWTDATAARKAARQRAAAIEKGTAMPLTMDESVADFQLRVNFLKRMLPQVAISGYPEANR 1342

Query: 1085 VVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
             +I   +K        GE   + +LVEG GL+  M  EG+ G +  +N + E +  LGIE
Sbjct: 1343 AIIQTDDK-------TGE---HAVLVEGYGLRQCMTTEGVIGTQCVTNSVMECRDVLGIE 1392

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  I  EI   MK   M+ID RHM LLAD+MT++GE+LGITRFG+ KM  SVL LASF
Sbjct: 1393 AARTTIASEIRSVMK--DMNIDPRHMELLADVMTYKGEILGITRFGLAKMRDSVLQLASF 1450

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            EKT DHLF+A+   + DRI GVSECIIMG  M +GTG  ++ +R
Sbjct: 1451 EKTPDHLFDAAAGMKKDRILGVSECIIMGQSMSIGTGAFQVVRR 1494


>gi|367041111|ref|XP_003650936.1| hypothetical protein THITE_2110899 [Thielavia terrestris NRRL 8126]
 gi|346998197|gb|AEO64600.1| hypothetical protein THITE_2110899 [Thielavia terrestris NRRL 8126]
          Length = 1547

 Score =  806 bits (2082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/945 (45%), Positives = 602/945 (63%), Gaps = 58/945 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR----S 56
            +R P ++ LR++ ++K I ++C     KA  CP CG I G+++K ++V+ ++HD+    +
Sbjct: 138  LRRPGIDNLRRSAILKRINEQCR----KAKTCPYCGSIQGVIRK-LSVMKLVHDKYAAYN 192

Query: 57   KVT-----------ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEV 105
            K T           E    F  A  +T E +     A   LNP+ VL LFK+++ +DCE 
Sbjct: 193  KSTAQKKIAPQSKLEFDASFEQAKKYTPELEKHTRKAMDDLNPLKVLNLFKQISPSDCEF 252

Query: 106  LYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            L L     RPE  +   +  PPI IRPSV  + + SNE+DIT +L  II     L++ + 
Sbjct: 253  LGLDPAEGRPEMFLWQYVPAPPICIRPSVAQENA-SNEDDITSKLSEIILYAGHLRESMK 311

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            +  +    +  WE LQ++V  Y+NSDV G+ +     +P+ GF QRLKGKQGRFRGNLSG
Sbjct: 312  KGVALPVIMEQWEFLQLQVGMYVNSDVPGL-YQPGFGKPIRGFCQRLKGKQGRFRGNLSG 370

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GRTVISPDPNL I +VA+P  +A+ LTYPERV+  NIEKLR+ + NGP  +PGA
Sbjct: 371  KRVDFSGRTVISPDPNLSIEQVAVPQLVAKNLTYPERVNHANIEKLRERVINGPHIWPGA 430

Query: 283  RMIRYPDGTARVL-YGK--FRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
            + I   DG+   L  GK   R + A  L+ G +V+RHLED D+VLFNRQPSLH++SIM H
Sbjct: 431  QGIIKKDGSKYNLKIGKESLRERHADNLEFGDVVERHLEDDDIVLFNRQPSLHKLSIMSH 490

Query: 340  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
              ++ PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV++NL TPKNGE
Sbjct: 491  LVKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLITPKNGE 550

Query: 400  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
             ++A+TQDF+T++FL++ KD F+DR  F+ +C  M  G   ++LP PAI+KP  LWTGKQ
Sbjct: 551  PIIAATQDFITAAFLLSSKDRFFDRTTFTYICTQMLLGDTYLELPPPAIIKPRALWTGKQ 610

Query: 460  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
            +F+V++RP+    V VNL  K K +  K       ++  I  M  +D F+  RNSE++ G
Sbjct: 611  IFNVMMRPNKESPVLVNLDAKNKAFQKK-------QDGEIPDMDIDDAFLVVRNSEVMCG 663

Query: 520  QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
            ++ K+T+G G K+ ++ V+LRD+G    +  MNRLAKLSAR +   GFSIG+ DV P   
Sbjct: 664  RMDKSTVGGGKKNSVFYVILRDFGPEYAAAAMNRLAKLSARTLTLRGFSIGVGDVWPSDS 723

Query: 580  LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
            L+  K  L+ + Y+ C+  I+ Y +GKL+  PGC+  +TLE +I+ IL+++R+ AG  C+
Sbjct: 724  LTAHKASLVEDAYKKCDDLIETYRQGKLEKAPGCNLEETLENIISGILSKVRQQAGNYCV 783

Query: 640  GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
             +L   N+PLIM++ GSKGS IN++QMVACVGQQ + G+R P+GF DRSLPHF + A++P
Sbjct: 784  DNLSKNNAPLIMAKSGSKGSEINVAQMVACVGQQIISGKRVPDGFQDRSLPHFHKNARQP 843

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             +KGFV NSFY+GL  TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD+
Sbjct: 844  PSKGFVRNSFYTGLVPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDD 903

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSE 819
            +VR + G IVQF YG D +DP +MEG + +P++F R     ++      +  L P +V E
Sbjct: 904  TVRTSEGGIVQFQYGADRLDPVDMEGDA-KPVDFARTWNHAQSITWSNSEPSLLPWEVQE 962

Query: 820  IVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTS 879
            + +  L A  K+      + +                   E+I +DD + I + + H   
Sbjct: 963  LCKTILDAERKKYVRRHLVTN-------------------EEIKYDDDT-IRQSMDHDVL 1002

Query: 880  -GITEKQ-LEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQ 922
              I E + + VF+ T     R + ++   A  A+G      P  Q
Sbjct: 1003 IAIDEHESVRVFLNTIHDYVRERALKLAKARKAVGLDPCIPPTDQ 1047



 Score =  322 bits (824), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 184/407 (45%), Positives = 244/407 (59%), Gaps = 51/407 (12%)

Query: 877  KTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 936
            + + ++E+ L  FIQ C  +YR  RVE G A+GA+GAQSIGEPGTQMTLKTFHFAGVA M
Sbjct: 1109 RVAKVSERTLRTFIQMCLHKYRRARVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGM 1168

Query: 937  NITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVM 996
            +ITQGVPRIKEIIN +K ISTP+IT +LE   +  AARVVKGRIEKT +  V   I    
Sbjct: 1169 SITQGVPRIKEIINASKLISTPVITCKLENKWDIKAARVVKGRIEKTYISDVISYIDDEW 1228

Query: 997  TSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR----KLEIF 1052
               +A IV+ +D++ + D  L I    + ++IV+  K+KLK   ++  D R    ++E+ 
Sbjct: 1229 LPDVAKIVLQVDVQALSDMQLGITTKDIADAIVRAKKLKLK---VEPEDLRISANRVEVV 1285

Query: 1053 -----------------------------PPVDKSKIHFELYS--LKNVLPMVIVKGIKT 1081
                                            D+S   F+L    LK +LP V + G   
Sbjct: 1286 VRNTWQDVTAARKAARARAAAIEKGQHVSSATDESAADFQLRVNFLKRMLPHVAISGYPE 1345

Query: 1082 VERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTL 1141
              R +I           +  +  ++ +LVEG GL+A M  EG+ G +  +N + E +  L
Sbjct: 1346 AARAII-----------QTSDANEHEVLVEGYGLRACMTTEGVIGTQCVTNSVMECRDVL 1394

Query: 1142 GIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLML 1201
            GIEAAR  I  EI + M +  MSID RHM LLAD+MT++GEVLGITRFG+ KM  SVL L
Sbjct: 1395 GIEAARTTIAKEIGQVMSS--MSIDPRHMELLADVMTYKGEVLGITRFGLAKMRDSVLQL 1452

Query: 1202 ASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1248
            ASFEKT DHLF+A+   + DRI+GVSECIIMG  M +GTG  ++ +R
Sbjct: 1453 ASFEKTPDHLFDAAAGMKKDRIQGVSECIIMGQTMSIGTGAFQVVRR 1499


>gi|45935351|gb|AAS79697.1| RNA polymerase III large subunit [Ginkgo biloba]
          Length = 548

 Score =  802 bits (2071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/559 (70%), Positives = 438/559 (78%), Gaps = 17/559 (3%)

Query: 368 MNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 427
           MN+HVPQTEEARTEAL+LMGVQNNLCTPKNGEIL+ASTQDFLTSSFLITRKDTFYDRA F
Sbjct: 1   MNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILIASTQDFLTSSFLITRKDTFYDRATF 60

Query: 428 SLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNK 487
           SLMC YMGD  + +DLPTPAILKP+ELWTGKQLFSVL+RP+ANMRV+VNL + EK YS  
Sbjct: 61  SLMCSYMGDAAEPIDLPTPAILKPMELWTGKQLFSVLVRPNANMRVFVNLILTEKNYSKS 120

Query: 488 LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
                       ETM PNDG VYFRNSELIS Q+GKATL NGNKDGL++VLLRDY  HA 
Sbjct: 121 -----------GETMRPNDGCVYFRNSELISRQIGKATLRNGNKDGLFTVLLRDYNTHAA 169

Query: 548 SGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL 607
           + CMNRLAKLSARWIGNHGFSIGIDDVQP   LS KK + I E Y  C++ I  YN+GKL
Sbjct: 170 ASCMNRLAKLSARWIGNHGFSIGIDDVQPGSRLSAKKEQRIREGYSKCDMHIDLYNKGKL 229

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
            L+PGC+AAQTLEA IT  LN+IRE AG  C+  L WRNSPLIMSQCGSKGSPINISQM+
Sbjct: 230 TLQPGCNAAQTLEAEITGELNKIREVAGSVCLKELHWRNSPLIMSQCGSKGSPINISQMI 289

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           ACVGQQSVGGRRAPNGFIDRSLPHFPR  K PAAKGFVANSFY+GL+ATEFFFHTMGGRE
Sbjct: 290 ACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYTGLTATEFFFHTMGGRE 349

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GLVDTAVKTA+TGYMSRRL+KALEDLS  YD++VRNA G IVQ LYGDDGMDP NMEGK 
Sbjct: 350 GLVDTAVKTAETGYMSRRLMKALEDLSTHYDSTVRNASGGIVQLLYGDDGMDPVNMEGKD 409

Query: 788 GEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG---KESCSEAFLNSLRKF 844
           G PLN DRLLMK KATCP  G   LSP ++   VE++L  +    +  CS AF +SL KF
Sbjct: 410 GPPLNLDRLLMKTKATCPANGSVALSPSEIIRKVEERLLKHDMTPEGGCSAAFKSSLTKF 469

Query: 845 FEGQQDKLDKK---IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKR 901
           FE     + K    +    D   +    ILE      SG+T +Q EVF++TC  RY  KR
Sbjct: 470 FEKSIYSIRKSRSVLGLPMDPNGEQDLSILERTAADISGLTARQFEVFVETCIKRYHSKR 529

Query: 902 VEAGTAIGAIGAQSIGEPG 920
           +E G A+GA+GAQSIGEPG
Sbjct: 530 MEPGAAVGAVGAQSIGEPG 548


>gi|45935347|gb|AAS79695.1| RNA polymerase III large subunit [Cycas revoluta]
          Length = 548

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/559 (71%), Positives = 444/559 (79%), Gaps = 17/559 (3%)

Query: 368 MNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 427
           MN+HVPQTEEARTEAL+LMGVQNNLCTPKNGEIL+ASTQDFLTSSFLITRKDTFYDRA F
Sbjct: 1   MNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILIASTQDFLTSSFLITRKDTFYDRATF 60

Query: 428 SLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNK 487
            LMC YMGD ++ +DLPTP ILKP+ELWTGKQLFSVL+RP+AN+RV+VNL + EK YS  
Sbjct: 61  CLMCSYMGDAVEPIDLPTPTILKPIELWTGKQLFSVLVRPNANVRVFVNLMLAEKNYSKS 120

Query: 488 LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
                       ETMCPNDGFVYFRNSELISGQ+GKATLGNGNKDGL++VLLRDY  HA 
Sbjct: 121 R-----------ETMCPNDGFVYFRNSELISGQIGKATLGNGNKDGLFTVLLRDYNTHAA 169

Query: 548 SGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL 607
           +  MNRLAKLSARWIGNHGFSIGIDDVQP   LS +K + I E Y  C++ I  YN+GKL
Sbjct: 170 ASSMNRLAKLSARWIGNHGFSIGIDDVQPGTRLSAQKEERIKEGYSKCDMHIDLYNKGKL 229

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
            L+PGC+AAQTLEA IT  LN+IRE AG  C+  L WRNSPLIMSQCGSKGSPINISQM+
Sbjct: 230 TLQPGCNAAQTLEAEITGELNKIREIAGSVCLKELHWRNSPLIMSQCGSKGSPINISQMI 289

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           ACVGQQSVGGRRAPNGFIDRSLPHFPR  K PAAKGFVANSFY+GL+ATEFFFHTMGGRE
Sbjct: 290 ACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYTGLTATEFFFHTMGGRE 349

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GLVDTAVKTA+TGYMSRRL+KALEDLS  YD +VRNA G IVQ LYGDDGMDP NMEGK 
Sbjct: 350 GLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRNASGGIVQLLYGDDGMDPVNMEGKD 409

Query: 788 GEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG---KESCSEAFLNSLRKF 844
           G PLN DRLLMK KA CP  G   LSP ++S+ VE++L+ +    +  CS AF NSL KF
Sbjct: 410 GTPLNLDRLLMKTKAICPANGVISLSPAEISKRVEERLSKHDMTPEGGCSAAFKNSLAKF 469

Query: 845 FEGQQDKLDK---KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKR 901
           FE     + K    +    D   D    ILE +    SG+T +Q EVFI+TC  RY +KR
Sbjct: 470 FEKHISVIRKTRCALGLPMDASDDSNFFILERIASDISGLTARQFEVFIETCIGRYHLKR 529

Query: 902 VEAGTAIGAIGAQSIGEPG 920
           +EAG AIGAIGAQSIGEPG
Sbjct: 530 MEAGAAIGAIGAQSIGEPG 548


>gi|214028084|gb|ACJ63311.1| RNA polymerase III large subunit [Papaver orientale]
          Length = 554

 Score =  791 bits (2044), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/565 (70%), Positives = 451/565 (79%), Gaps = 25/565 (4%)

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           MHVPQTEEARTEAL+LMGVQNNLCTPKNGEILVASTQDFLTSSFLITR+DTFYDRA+FSL
Sbjct: 1   MHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRRDTFYDRASFSL 60

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           MC YMGD MD +DLPTPA++KPVELWTGKQLF+VLIRPHA MRV+VNLTV EK+Y    I
Sbjct: 61  MCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVLIRPHAQMRVFVNLTVFEKSY----I 116

Query: 490 RTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSG 549
           +         ET+CPNDGFVYFRNSELI GQLGKATLGNGNKDGL+SVLLRDY AHA + 
Sbjct: 117 KGR-------ETLCPNDGFVYFRNSELICGQLGKATLGNGNKDGLFSVLLRDYDAHAAAS 169

Query: 550 CMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQL 609
           CMNRLAKLSARWIGN GFSIGI DVQP K LSDKK K I +  E C+  I+ Y  GKL+L
Sbjct: 170 CMNRLAKLSARWIGNQGFSIGISDVQPGKSLSDKKQKKIDKGKEKCDKLIEHYKTGKLEL 229

Query: 610 KPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVAC 669
           +PGCDAAQTLEA IT I N IRE A   CM +L WRNSPLIMSQCGSKGSP NI+QM+AC
Sbjct: 230 QPGCDAAQTLEAEITGIQNNIREKAATVCMENLHWRNSPLIMSQCGSKGSPSNITQMIAC 289

Query: 670 VGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
           VGQQSVGGRRA NGFIDRSLPHFPR +  P AKGFV NSFY+GL+ATEFFFHTMGGREGL
Sbjct: 290 VGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVENSFYTGLTATEFFFHTMGGREGL 349

Query: 730 VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGE 789
           VDTAVKTADTGYMSRRLIKALEDLSI YD++VR+A G +VQFLYGDDGMDP+ MEGK G 
Sbjct: 350 VDTAVKTADTGYMSRRLIKALEDLSIHYDSTVRSASGGVVQFLYGDDGMDPSRMEGKDGT 409

Query: 790 PLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG---KESCSEAFLNSL---RK 843
           PLN DRL MKVKATCP  G   LSP ++ ++V  +L+ +    +  CS+AF  SL     
Sbjct: 410 PLNLDRLYMKVKATCPARGHSSLSPAEILKLVVARLSKHDMTPEGGCSDAFKKSLLDEEG 469

Query: 844 FFEGQQDK-LDKKIKFVEDI-------GWDDKSQILEEVTHKTSGITEKQLEVFIQTCFS 895
           F + ++   L K I  +++        G    S+ LE+V+   +GIT +QL+VF++TC S
Sbjct: 470 FMQNKEGGFLGKCITSLKNTRRDLQLDGVKKGSESLEKVSANIAGITLQQLQVFLETCIS 529

Query: 896 RYRVKRVEAGTAIGAIGAQSIGEPG 920
           RY +K +EAG+AIGAIGAQSIGEPG
Sbjct: 530 RYHLKGIEAGSAIGAIGAQSIGEPG 554


>gi|387593897|gb|EIJ88921.1| RNA polymerase 2 [Nematocida parisii ERTm3]
          Length = 1284

 Score =  791 bits (2044), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1255 (38%), Positives = 705/1255 (56%), Gaps = 133/1255 (10%)

Query: 14   LMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-------VAVLGIIHDRSKVTESLQEFA 66
            L + ++KK    + K V+C  C  ING+V+K        V  L   HD  K  E     A
Sbjct: 132  LEQRVIKKVFDESKKTVECFSCNSINGIVRKTGFKFFHRVHRLKK-HDTQKEIERTLYSA 190

Query: 67   SAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIA 126
            S   + + +    N     L+P+ V  + + +T+    +L +S     L+IT + VPP  
Sbjct: 191  SVKDNPELTNWINNTPDEYLSPITVQEVLRNITEDAKSLLGVSCDVVSLMITCLPVPPGT 250

Query: 127  IRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYIN 186
            IRPSV+   S SNE+D+T +L  I  T+  ++ E+ +  S       W+ LQ + AQ I+
Sbjct: 251  IRPSVMSLDSSSNEDDLTIKLSEISYTSQLIRDEIAKGASLHALAENWDLLQSQCAQLIS 310

Query: 187  SDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAI 246
            SD R        A  +   VQRLKGK GRFRGNLSGKRVE++GRTVISPDPNL + +V I
Sbjct: 311  SDSR------PDAAKIRSLVQRLKGKHGRFRGNLSGKRVEFSGRTVISPDPNLSVEQVGI 364

Query: 247  PIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVE 306
            P  MA+ LT P  +++ N  K+    +NG   YPGA  +   D   R+   K  N   + 
Sbjct: 365  PEEMAKTLTVPIPITEGNKNKMSALSKNGCSTYPGANYLLKQD--RRIFLRKDNN---IV 419

Query: 307  LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 366
            L+ G I++RH++D DVVLFNRQPSLHR+SIM H+ +++P RTLRFNE VC+PYNADFDGD
Sbjct: 420  LEEGDILERHMQDSDVVLFNRQPSLHRLSIMAHKVKVLPGRTLRFNECVCSPYNADFDGD 479

Query: 367  EMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 426
            EMN+H+PQT EAR EAL LMGV+NNL  P+NG+ L+A+TQDF+T S+LIT+K TF+ +  
Sbjct: 480  EMNIHLPQTVEARVEALELMGVKNNLSVPRNGQPLIAATQDFITGSYLITKKSTFFTKKQ 539

Query: 427  FSLMCCY-MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS 485
            F     Y + +  +R+    P IL+P  ++TGK LFS        + + +++ ++ + Y+
Sbjct: 540  FGQFITYALPNSTERIR-AKPTILRPAVIYTGKTLFS------TALNLSISVEIRTRNYT 592

Query: 486  NKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAH 545
               + +             N+G    R+ E++ G+  K  +G   +  ++   LR+ G  
Sbjct: 593  PSTVPS-----------AQNEGVFVMRDGEILFGRADKRIVG-AEEGTIFHYELREGGPL 640

Query: 546  ATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEG 605
                 ++ +A+L +R++G  GFSIG+DDV  + +L     +LI++  + C V+       
Sbjct: 641  VVVKALDAIARLCSRYLGESGFSIGLDDVFAEPDLY----QLITKAVDACEVEA------ 690

Query: 606  KLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQ 665
                     A++  ++ I+ IL+R REDAGK C+  L   NSP+IM  CGSKGS IN+SQ
Sbjct: 691  ---------ASKPADSTIS-ILSRAREDAGKHCIERLSPHNSPVIMQACGSKGSLINVSQ 740

Query: 666  MVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGG 725
            MVACVGQQ VGG+R    F DR+LPHF  +    A++GFV +SF +GL  TEFFFH + G
Sbjct: 741  MVACVGQQVVGGQRISLDFGDRTLPHF--QGDTNASRGFVRSSFCAGLLPTEFFFHAVSG 798

Query: 726  REGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEG 785
            REGLVDTAVKTA+TGYM RRL+K LE + + YD +VR  G  I+Q  +GDDG+DP  ++ 
Sbjct: 799  REGLVDTAVKTAETGYMQRRLMKVLEGVYVAYDGTVRR-GKQIIQMQFGDDGLDPVVLQK 857

Query: 786  KSGEPLNFDRLLMKVKA--TCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRK 843
             +   L  D  +    A  TC    +   S   +S +     +        ++  NS+  
Sbjct: 858  GT---LTTDMPIAHSWAISTCTKLSEDKNS-NGLSSLDRVHPSVVLIYDAVQSIWNSIYN 913

Query: 844  FFEG-----QQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYR 898
             + G         ++K + +      +     L     KT  +T    ++FI     +  
Sbjct: 914  SYAGIVTNDLWSMVNKSVGYTLFRHNNTHLIKLMNTFTKTHAMTAPVKQLFISKMLFQAL 973

Query: 899  VKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTP 958
              ++E GTA+GA+ AQSIGEPGTQMTLKTFH AG +  +IT GVPR+KEIIN +  ISTP
Sbjct: 974  KSQIEYGTAVGALAAQSIGEPGTQMTLKTFHLAGTSGASITLGVPRLKEIINASTAISTP 1033

Query: 959  IITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLC 1018
            +I    +    +   + +  R++  L+  +A+S+ I  TS +  I  +L M+        
Sbjct: 1034 LI----KIIPLDGHFKYIPDRVQPILISDLAESVSINKTSAVFKISSSLIMK-------- 1081

Query: 1019 INADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVI--- 1075
             N D                        ++++    V K   ++    L+  LP  +   
Sbjct: 1082 YNVD------------------------KEIKSLGGVKKDDTYYWEAPLEKYLPSEVDKL 1117

Query: 1076 ----VKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKS 1131
                VKGI +V RV+  + E                ++ EGTGL  ++G EG++  +T +
Sbjct: 1118 LKTKVKGISSVTRVITTDTE----------------IIAEGTGLLDILGVEGVNSARTST 1161

Query: 1132 NHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGI 1191
            N+I+E  +TLGIEAAR  I+ EI  T+  HG+S+D RH+ LLAD+M F GE+ G+TRFG+
Sbjct: 1162 NNIYETYKTLGIEAARESIVKEIQYTIGQHGISVDTRHIGLLADVMCFTGEICGMTRFGL 1221

Query: 1192 QKM-DKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            QKM   SVL LASFE+T +HLF AS +G +D+I GVSECII G  +P+GTG  KI
Sbjct: 1222 QKMGGSSVLTLASFEQTGEHLFTASYSGYEDQINGVSECIISGQRIPIGTGSFKI 1276


>gi|195399321|ref|XP_002058269.1| GJ15582 [Drosophila virilis]
 gi|194150693|gb|EDW66377.1| GJ15582 [Drosophila virilis]
          Length = 1044

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/951 (45%), Positives = 593/951 (62%), Gaps = 65/951 (6%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            + NP    L K  L   ++ K    A K  KCP CG  NG VKK   +L I+HD  K  +
Sbjct: 127  LHNPNFSYLGKKALHSQMLAK----AKKVTKCPHCGAANGGVKKGPGLLKILHDPYKGRK 182

Query: 61   SLQEFASAITH---TKESKAAVNV------ATYILNPVNVLFLFKRMTDTDCEVLYLSER 111
                F S +     + E    +N+      A   L P+ VL LF+++  +D  +L +  R
Sbjct: 183  KDAVFTSHMDQMLRSTELNRDLNLTLSNYSAAEELTPLMVLDLFEQIPQSDVALLGMCSR 242

Query: 112  ---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               P+ LI+T + VPP  IRPSV+ +  + + E+D+T +   I+  N  +Q+ +      
Sbjct: 243  GAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKI 302

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                  W+ LQ+ VA Y +S++ G+P +M   +   G VQRLKGKQGRFRGNLSGKRV++
Sbjct: 303  ELIHEDWDFLQLHVALYFHSEISGIPLNMAPKKTTRGIVQRLKGKQGRFRGNLSGKRVDF 362

Query: 228  TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY 287
            +GRTVISPDPNL I +V +P+R+A+ILTYPERV+  NI +++Q ++NGP  +PGA  ++ 
Sbjct: 363  SGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRQMKQLVRNGPSMHPGANYVQQ 422

Query: 288  PDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
               + +  + YG  R ++A ELK G IV+RHL D D+VLFNRQPSLH+MSIMCHRA++ P
Sbjct: 423  RGSSFKKYLAYGN-REKVAQELKCGDIVERHLRDDDIVLFNRQPSLHKMSIMCHRAKVQP 481

Query: 346  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
             RT RFNE  C PYNADFDGDEMN+H+PQTEEAR EAL+LMG Q+NL TPKNGEIL+A+T
Sbjct: 482  QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAAT 541

Query: 406  QDFLTSSFLITRKDTFYDRA-AFSLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS 462
            QDF+T  +L+T+K+ F  +  A  L  C++   D   R+ +P PAI KP  LWTGKQLFS
Sbjct: 542  QDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMRIQMPPPAIWKPRRLWTGKQLFS 601

Query: 463  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
            +L+RP+ +  V +N+  K + Y+  +             +C ND +++ RNSEL+ G + 
Sbjct: 602  LLMRPNDDSNVRLNMVNKGRNYAGNM------------DLCANDSWIHIRNSELMCGTMD 649

Query: 523  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
            KAT+G+G K  ++ +LLRD+G    +  M RLA++++ +I N GFS GI DV P ++L  
Sbjct: 650  KATMGSGTKQCIFYLLLRDFGEAFATKAMWRLARIASYFIQNRGFSFGISDVTPSEKLLH 709

Query: 583  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
             K  L+   Y  CN  I++   G LQ +PGC  A+TLEAV+   L+ IRE A K C   L
Sbjct: 710  HKQILLERGYAKCNDYIEKLKAGTLQCQPGCTPAETLEAVMLRELSGIREQAAKTCFAEL 769

Query: 643  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
               NS LIM+  GSKGS INISQM+ACVGQQ++ G+R PNGF +R+LPHF R +  PAA+
Sbjct: 770  HPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFDRHSAIPAAR 829

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GFV NSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+K LEDL + YD +VR
Sbjct: 830  GFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVR 889

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            NA   +V  +YG DG+DP +ME ++ +P++ +     ++A  P   Q+   P +  EI+ 
Sbjct: 890  NAINEMVDTIYGGDGLDPVSMETRN-KPVDLNHQYDNLRAQLPCVEQQ--QPLEADEIL- 945

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQD-KLD---------KKI-KFVEDIGWDDKSQIL 871
                       +E  L  L +F E + D KLD         K+I +  +  G   +S   
Sbjct: 946  ---------GVAETLL-KLPEFAEARLDFKLDITAHLKNIAKRIGQLQQQYGSKHRS--- 992

Query: 872  EEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQ 922
              + ++   ++ +QL  F++    RY     E GTA+GA  AQ+IGE GTQ
Sbjct: 993  --LCNQIECLSREQLLEFLRRINDRYNRAVSEPGTAVGANAAQTIGERGTQ 1041


>gi|316997003|dbj|BAJ52629.1| RNA polymerase III largest subunit [Stephanoeca diplocostata]
          Length = 933

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/942 (46%), Positives = 587/942 (62%), Gaps = 75/942 (7%)

Query: 369  NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 428
            N+HVPQTEEAR EAL LMG ++N+CTP+NGE L+A+ QDF+T ++L+T+KD F  R+  S
Sbjct: 1    NLHVPQTEEARAEALELMGTKSNICTPRNGEPLIAAIQDFITGAYLLTQKDQFLSRSQAS 60

Query: 429  LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKL 488
             +  YM  G   V +P PAI+KPV LWTGKQ+ SV+++ +      + +TV++KT ++  
Sbjct: 61   QLIAYMSGGDIPVTMPAPAIVKPVALWTGKQIASVMLKTN-KYATDIRVTVEKKTRASYK 119

Query: 489  IRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
                 D+    ++MCPNDG++   NSELI G L KA+ G+G+K  ++ V+LRDYG  A +
Sbjct: 120  PTEVHDQ---TKSMCPNDGYLVIYNSELICGTLDKASTGDGSKSTIFYVILRDYGKDAAA 176

Query: 549  GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
              M RLAKL++ ++   GFSIGI DV P +EL  KK  L+ + Y  C+  I E + G+L+
Sbjct: 177  EAMLRLAKLASYFLHTRGFSIGIGDVSPSQELQRKKALLVRDGYAQCDKLIAEMHAGELE 236

Query: 609  LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
              PG     TLEA +T +L+ IR++AG  C   LP  N+P++M++CGSKGS +N+SQM+A
Sbjct: 237  PLPGSTVEGTLEAQLTTVLSDIRKEAGSLCKQQLPRFNAPVVMARCGSKGSDLNMSQMIA 296

Query: 669  CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            CVGQQ++GG R P GF +R+LPHF R + +P AKGFV+NSF+SGL+ +EFFFHTM GREG
Sbjct: 297  CVGQQTLGGNRIPAGFENRTLPHFERGSADPNAKGFVSNSFFSGLTPSEFFFHTMCGREG 356

Query: 729  LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS- 787
            LVDTAVKTA+TGYMSRRL+KALEDLS  YD  V+N+ G +VQF YGDDG+DPA MEG   
Sbjct: 357  LVDTAVKTAETGYMSRRLMKALEDLSTDYDLRVQNSSGTMVQFCYGDDGLDPAGMEGDGA 416

Query: 788  --GEPLNFDRLL-MKVKAT-CPPAGQRYLSPQQVSEIVEKQLAA-------YGKESCSEA 836
              G P+N + L  ++V A    PA   Y  P Q+     + L         Y   +    
Sbjct: 417  TEGMPVNLEHLWALEVTAHRSDPAPALY--PFQIRSCALELLRTDHVFREIYASPAAKLR 474

Query: 837  FLN----SLRKFFEGQQDKLDKKI------KFVEDIGWDDKSQIL--------------- 871
              N    ++R   +G     D         +F+ED    D  QIL               
Sbjct: 475  HTNNTSTAVRPGGDGAAGSADDHFFMQQIARFIED-KCVDYEQILRTFGRDVQPPGPGCA 533

Query: 872  -----------EEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPG 920
                       +    +   IT  QL  F+  C  +Y    +E G+A+GA+GAQSIGEPG
Sbjct: 534  PPAPLTPSNADDHAIMQLFRITRGQLTHFLHRCAFKYARASIEPGSAVGAVGAQSIGEPG 593

Query: 921  TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL----ECNDNENAARVV 976
            TQMTLKTFHFAG+A+MNITQGVPRIKEIIN +K ISTP+ITA +    E N  E  A V 
Sbjct: 594  TQMTLKTFHFAGIAAMNITQGVPRIKEIINASKNISTPVITAPIAHVPESNMTE-VAHVC 652

Query: 977  KGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKL 1036
            K R+E+ LL  +  S   V T     I + LD+E I    L ++   V ++++ +  +KL
Sbjct: 653  KARVERCLLKDITISFTEVFTPNRVYITVHLDLERIHRLRLELDMQTVIDALLAS-SLKL 711

Query: 1037 KQQHIKVLDFR-KLEIFPPVD-KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEK 1094
            K  +I+      K+ +FPP   KS   + L +L++ LP VIV+G K + RV+I + + E 
Sbjct: 712  KHTNIEHDPAHGKIRVFPPASAKSTPFYALQALRDALPNVIVRGDKNINRVIIQQGKTET 771

Query: 1095 RKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEI 1154
                        +LLVEGT ++AVMG  GI G    +NH+ + +  LGIEAAR  II EI
Sbjct: 772  ------------KLLVEGTDMRAVMGTRGIVGTAVVTNHLMDAEACLGIEAARATIIREI 819

Query: 1155 NETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA 1214
              TM AHGM+ID RH+MLLADLMTF+GE+LGITRFGI KM  S  MLASFEKT DHLF+A
Sbjct: 820  QTTMSAHGMTIDSRHVMLLADLMTFKGEILGITRFGIAKMKSSTFMLASFEKTTDHLFDA 879

Query: 1215 SVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAVPPMLK 1256
            +++G  D I GVSECII+G PM +GTG+  +   D V   +K
Sbjct: 880  ALHGNSDPISGVSECIILGKPMKIGTGLFDLVHGDTVKAHVK 921


>gi|45935349|gb|AAS79696.1| RNA polymerase III large subunit [Zamia muricata]
          Length = 548

 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/559 (70%), Positives = 441/559 (78%), Gaps = 17/559 (3%)

Query: 368 MNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 427
           MN+HVPQTEEARTEAL LMGVQNNLCTPKNGEIL+ASTQDFLTSSFLITRKDTFYDRA+F
Sbjct: 1   MNLHVPQTEEARTEALTLMGVQNNLCTPKNGEILIASTQDFLTSSFLITRKDTFYDRASF 60

Query: 428 SLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNK 487
            LMC YMGD  + +DLPTP ILKP+ELWTGKQLFSVL+RP+AN+RV+VNL + EK YS  
Sbjct: 61  CLMCSYMGDAAEPIDLPTPTILKPMELWTGKQLFSVLVRPNANVRVFVNLMLTEKNYSKS 120

Query: 488 LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
                       ETMCPNDGFVYFRNSELISGQ+GKATLGNGNKDGL++VLLRDY  HA 
Sbjct: 121 -----------GETMCPNDGFVYFRNSELISGQIGKATLGNGNKDGLFTVLLRDYNTHAA 169

Query: 548 SGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL 607
           +  MNRLAKLSARWIGNHGFSIGIDDVQP   LS KK + I E Y  C++ I  YN+GKL
Sbjct: 170 ASSMNRLAKLSARWIGNHGFSIGIDDVQPGTRLSAKKEERIKEGYSKCDMHIDLYNKGKL 229

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
            L+PGC+AAQTLEA IT  LN+IRE AG  C+  L WRNSPLIMSQCGSKGSPINISQM+
Sbjct: 230 TLQPGCNAAQTLEAEITGELNKIREVAGSVCLKELHWRNSPLIMSQCGSKGSPINISQMI 289

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           ACVGQQSVGGRRAPNGFIDRSLPHFPR  K PAAKGFVANSFY+GL+ATEFFFHTMGGRE
Sbjct: 290 ACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYTGLTATEFFFHTMGGRE 349

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GLVDTAVKTA+TGYMSRRL+KALEDLS  YD +VRNA G IVQ LYGDD MDP NMEGK+
Sbjct: 350 GLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRNASGGIVQLLYGDDAMDPVNMEGKN 409

Query: 788 GEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG---KESCSEAFLNSLRKF 844
           G PLN DR+LMK KATCP  G   LSP ++S+ VE +L+ +    +  CS AF NSL +F
Sbjct: 410 GTPLNLDRILMKAKATCPANGAFSLSPSEISKRVEDRLSKHDMTPEGGCSAAFKNSLAQF 469

Query: 845 FEGQQDKLDKK---IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKR 901
            E Q   +      +    D   D     LE +    SG+T +Q EVF++TC  RY +KR
Sbjct: 470 LEKQISLIQNTRCVLGLPMDANGDPNLSTLERIASDISGLTAQQFEVFMETCIRRYHLKR 529

Query: 902 VEAGTAIGAIGAQSIGEPG 920
           +EAG AIGAIGAQSIGEPG
Sbjct: 530 IEAGAAIGAIGAQSIGEPG 548


>gi|449016275|dbj|BAM79677.1| RNA polymerase III largest subunit [Cyanidioschyzon merolae strain
            10D]
          Length = 1930

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/945 (45%), Positives = 578/945 (61%), Gaps = 77/945 (8%)

Query: 84   YILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQ-SN 139
            + L P++VL L + +   D E L +   + RPE +++  +AVPP+ IRPSV  D SQ S 
Sbjct: 495  FELTPLHVLELLRNIAPADLEALGMDPDTTRPEDMLLRCVAVPPVCIRPSVCNDPSQGST 554

Query: 140  ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA 199
            E+D+T  L  I   NA + ++LV+ +   K L  W+ LQ+ VA+YI++D  G+P S+   
Sbjct: 555  EDDLTIMLADIAGANALVMEQLVKGSDLGKLLDAWDHLQLAVARYIHADYPGLPASLYYK 614

Query: 200  RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
              + G  QRLKGKQGRFRGNLSGKRV+++ RTVISPDPNL I +V +P+R+A+ILTYPER
Sbjct: 615  AQI-GLCQRLKGKQGRFRGNLSGKRVDFSARTVISPDPNLSIDQVGVPLRIAKILTYPER 673

Query: 260  VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
            V+  NI++LR+ +  GPD++PGA  + +PDG+ R L    R  +A  L  GC+V+RHL D
Sbjct: 674  VTPWNIDQLRKSVLRGPDRHPGANYVLFPDGSKRFLRFGDREDIARSLCVGCVVERHLRD 733

Query: 320  GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
            GD+VLFNRQPSLHR+SIM H  +++  RT RFNE VC PYNADFDGDEMN+HVPQTEEAR
Sbjct: 734  GDLVLFNRQPSLHRLSIMAHSVKVIAGRTFRFNECVCAPYNADFDGDEMNLHVPQTEEAR 793

Query: 380  TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG---- 435
             EA  L+ V  NL +P+NGE L+A TQDF+T+ +L+T KD FY R A ++ C   G    
Sbjct: 794  AEARALLAVPQNLLSPRNGEPLIACTQDFITALYLLTHKDVFYGRWA-AVQCLSFGLEPE 852

Query: 436  -DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANM-----RVYVNLTVKEKTYSNKLI 489
                    LP PAIL P+ LWTGKQLFS L++    +     RV +     EK Y+++ I
Sbjct: 853  ASAAILGRLPEPAILHPLPLWTGKQLFSALVQADPALSDEAVRVLICFDATEKAYTHEGI 912

Query: 490  RTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSG 549
                         C  D +V  R++ELISGQ+ K TLG+ +K  L  VL R+ G      
Sbjct: 913  ------------WCRADAYVCVRSAELISGQVAKRTLGSQSKQSLLYVLQREAGPLLAVR 960

Query: 550  CMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQL 609
            CMNRLA+ ++RW+  +GFS GIDDV+P   L   K   I   Y      I+ Y  G ++ 
Sbjct: 961  CMNRLARFASRWLSEYGFSFGIDDVRPSPALEHAKAVRIRNAYTQVQDAIERYRAGVMRP 1020

Query: 610  KPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVAC 669
            +PG    +TLE  I  +L+ +RE AG+ C+  +   N+ +IM+  G+KGS INISQMVAC
Sbjct: 1021 RPGYTDEETLEWHIHRLLSDLREHAGQVCLQEMAPHNTAMIMAMSGAKGSTINISQMVAC 1080

Query: 670  VGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
            VGQQ+V G R   GF  R+LPHF R  K P A GFVANSFYSG++A EFFFH+M GREGL
Sbjct: 1081 VGQQTVNGTRVRAGFHQRTLPHFMRGDKSPEAGGFVANSFYSGMNAIEFFFHSMAGREGL 1140

Query: 730  VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGE 789
            VDTAVKTA+TGYM RR +KALEDL + YD++VR +   +VQ  +G DG+DP  ME   G+
Sbjct: 1141 VDTAVKTAETGYMQRRFMKALEDLRVAYDDTVRTSDASLVQLRFGGDGLDPLEMEASDGQ 1200

Query: 790  PLNFDRLLMKVK---ATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCS------------ 834
             ++++RL   V+   A   P  +R L  + +++ V   +A    ++ S            
Sbjct: 1201 AIDWERLWTTVQWLDAHSDPLVERALGGRFLADSVPSAVAVAMPDTGSAQALPGASHRYQ 1260

Query: 835  ---------------------------EAFLNSLRKFFEGQQDKLDKKIKFVED------ 861
                                       E  ++ L++      +  D      E       
Sbjct: 1261 QQQQQQQRLQQQRRSWTLASPRMQPEPERMVDDLQRPLLEALEAADPSTAAFEQQQQQVP 1320

Query: 862  IGWDDK-SQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPG 920
            + W  +  Q +  +  + S +T +Q ++ +     + R   +E GTA+GAI AQSIGEP 
Sbjct: 1321 LSWPGRVRQGVLALATRHSPLTPRQWQLLMTLTERKLRRALIEPGTAVGAIAAQSIGEPS 1380

Query: 921  TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELE 965
            TQMTLKTFHFAGVASMNITQGVPRIKE++N  +RI+TP++TA LE
Sbjct: 1381 TQMTLKTFHFAGVASMNITQGVPRIKELVNATRRIATPLVTAYLE 1425



 Score =  177 bits (450), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 90/194 (46%), Positives = 126/194 (64%), Gaps = 12/194 (6%)

Query: 1064 LYSLKNVLPMVIVKGIKTVERVVIAEK-EKEKRKVKENGEK-----------KKYRLLVE 1111
            L  L+ ++P ++V G+ ++ RVV ++          ++GE            +  +LL E
Sbjct: 1610 LAQLQRLVPELVVSGLASIARVVWSQALSPASDSAGKSGEAAAAAAAASAATESIQLLAE 1669

Query: 1112 GTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMM 1171
               +++VM  +GID      NH+  V+Q LGIEAAR  I+ E+ ETM AHG+++D RH+ 
Sbjct: 1670 TEDMRSVMNTQGIDASSVYCNHVLVVEQVLGIEAARSTIVKEVLETMAAHGVTLDARHVD 1729

Query: 1172 LLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECII 1231
            LL+D+MT  G+VLGITRFGI KM +S LMLASFEKT DHLF A+V  R DRI GVSE +I
Sbjct: 1730 LLSDMMTQSGQVLGITRFGISKMRQSTLMLASFEKTVDHLFEAAVRSRSDRIRGVSERVI 1789

Query: 1232 MGIPMPLGTGILKI 1245
            MG P+PLGTG++ +
Sbjct: 1790 MGKPVPLGTGMVSV 1803


>gi|45935343|gb|AAS79693.1| RNA polymerase III large subunit [Podocarpus macrophyllus]
          Length = 546

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/557 (70%), Positives = 442/557 (79%), Gaps = 15/557 (2%)

Query: 368 MNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 427
           MN+HVPQTEEARTEAL+LMGVQNNLCTPKNGEIL+ASTQDFLTSSFLITRKDTFYDRAAF
Sbjct: 1   MNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILIASTQDFLTSSFLITRKDTFYDRAAF 60

Query: 428 SLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNK 487
           SLMC YMG+  + +DLPTPAILKP+ELWTGKQLFSVL+RP+  MRV+VNL V EK YS  
Sbjct: 61  SLMCSYMGNAAEHIDLPTPAILKPIELWTGKQLFSVLVRPNTKMRVFVNLIVMEKNYSKC 120

Query: 488 LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
                       ETMCPNDG VYFRNSELISGQ+GKATLGNGNK+GL+S+LLRDY +HA 
Sbjct: 121 -----------GETMCPNDGCVYFRNSELISGQVGKATLGNGNKNGLFSILLRDYNSHAA 169

Query: 548 SGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL 607
           + CMNRLAKLSARWIGNHGFSIGIDDVQP   LS KK + I E Y  C++ I  YN+GKL
Sbjct: 170 ASCMNRLAKLSARWIGNHGFSIGIDDVQPGTRLSAKKEEQIREGYSKCDMHIDLYNKGKL 229

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
            L+PGC+AAQTLE+ IT  LN+IRE AG  C+  L WRNSPLIMS CGSKGSPINISQM+
Sbjct: 230 TLQPGCNAAQTLESEITGELNKIREVAGSICLRELHWRNSPLIMSLCGSKGSPINISQMI 289

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           ACVGQQSVGGRRAPNGFIDRSLPHFPR  K PAAKGFVANSFY+GL+ATEFFFHTMGGRE
Sbjct: 290 ACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYTGLTATEFFFHTMGGRE 349

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GLVDTAVKTA+TGYMSRRL+KALEDLS  YD +VRNA G +VQFLYGDDGMDP NMEGK 
Sbjct: 350 GLVDTAVKTAETGYMSRRLMKALEDLSSHYDGTVRNASGGVVQFLYGDDGMDPVNMEGKD 409

Query: 788 GEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKES-CSEAFLNSLRKFFE 846
           G PLN DRLLMK KA CP  G R LS  ++ + VE++LA    ++  S  F +SL ++FE
Sbjct: 410 GAPLNLDRLLMKTKAICPANGSRALSVDEILKKVEERLAMPDMQTEGSYKFKSSLLEYFE 469

Query: 847 GQQDKLDKK---IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVE 903
                + K    +    D   +  + ILE +    SG+T +Q EVFI+TC  RY  K++E
Sbjct: 470 KCVCSIRKTRSVLGLCPDANDEQGTSILERIAADISGLTSRQFEVFIETCIKRYHTKKME 529

Query: 904 AGTAIGAIGAQSIGEPG 920
           AG AIGAIGAQSIGEPG
Sbjct: 530 AGAAIGAIGAQSIGEPG 546


>gi|300122349|emb|CBK22921.2| unnamed protein product [Blastocystis hominis]
          Length = 1576

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/819 (49%), Positives = 544/819 (66%), Gaps = 38/819 (4%)

Query: 3   NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGI----IHDRSKV 58
           NP  + L K    K ++  C     K  +CP C  +NG VKK      I    I   +K+
Sbjct: 103 NPYTDVLHKRQYNKQVIDLCR----KVYECPYCHAVNGEVKKIPGTASIRIEHILPPNKL 158

Query: 59  TESLQ-----EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE--- 110
           TE  Q      FASA  +  +  + ++ A   L    VL LFK +   D  +L+++E   
Sbjct: 159 TEEEQRAIHDSFASACKYNADLHSYIDRAHEDLTAQVVLDLFKLIPSEDLPLLWINELSG 218

Query: 111 RPEKLIITNIAVPPIAIRPSVIMDGSQ-SNENDITERLKRIIQTNASLQQELVEANSAFK 169
           RPE L++T+I VPP+ IRPSV+M+ +  SNE+DIT  L+ I +TN+ LQQ +    S   
Sbjct: 219 RPENLLLTDIIVPPVTIRPSVVMESTNGSNEDDITMILQDITRTNSQLQQSINNGASMRI 278

Query: 170 SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
            +  W+ LQ+  A+ IN D+ G+   ++ A P    VQRLKGKQGRFRGNLSGKRVE++G
Sbjct: 279 IMDNWDHLQILCAELINGDLPGISTLVKSAVPKRSLVQRLKGKQGRFRGNLSGKRVEFSG 338

Query: 230 RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
           RTVISPDPNL I EV +PI +A  LTYPERV+  NIE+LR  ++NG  +YPGA MIR  +
Sbjct: 339 RTVISPDPNLSIEEVGVPIFVAMKLTYPERVTAFNIERLRGMVRNGASRYPGANMIRPGN 398

Query: 290 GTA-RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 348
             A  ++YG  R + A  L+ G IV+RHL DGDV LFNRQPSLHRMSIM HR +++PW+T
Sbjct: 399 SRAISLMYGD-RERAAQNLQIGDIVERHLIDGDVSLFNRQPSLHRMSIMSHRVKVLPWKT 457

Query: 349 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDF 408
            RFNE  C+PYNADFDGDEMN+H+PQTEEAR EA  LMG+++N+  P++GE L+ +TQDF
Sbjct: 458 FRFNECDCSPYNADFDGDEMNIHIPQTEEARIEARELMGIKHNIVNPRSGEPLITATQDF 517

Query: 409 LTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
           +T +F++T++D F  R  F  +  ++ D  +     TPA+     LWTGKQ+FS+L++P+
Sbjct: 518 ITGAFVLTQRDVFLSRLDFCRLVAFLSDAQE-----TPAM-----LWTGKQVFSMLLKPN 567

Query: 469 ANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGN 528
               V ++L +K K +      ++ D  +    MCP DG+V  +NSEL+ G + K  +G 
Sbjct: 568 PQEGVVLSLEMKAKNFQ----MSKVDSNL---WMCPQDGYVVIQNSELLCGNIDKNCVG- 619

Query: 529 GNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLI 588
           GNK GL  VL+RD+    T   + RL KL++R++ ++GF+IG+DDV P + L  +  +++
Sbjct: 620 GNKKGLVCVLIRDFTPEDTVKALGRLTKLTSRFLMDYGFTIGLDDVSPDERLLQQMHEIV 679

Query: 589 SENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSP 648
           ++NY   +  I +YN GKL L+PGC+A QTLE++ + +L+ IR+  GK CM +LP  N P
Sbjct: 680 AKNYAKVDETIHQYNSGKLALRPGCNAEQTLESICSGLLSDIRDTIGKMCMTNLPKTNYP 739

Query: 649 LIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANS 708
           LIM+ CGSKGS INI QM+ CVGQQ V G R P+GFI RSLPHF   AKEP AKGFVANS
Sbjct: 740 LIMATCGSKGSAINICQMIYCVGQQVVSGNRIPDGFIQRSLPHFLPNAKEPNAKGFVANS 799

Query: 709 FYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCI 768
           FYSGL+  EFFFHTMGGREGLVD+AVKTADTGYM RRL+KALEDL I YDN+VR A   I
Sbjct: 800 FYSGLTPMEFFFHTMGGREGLVDSAVKTADTGYMQRRLMKALEDLCISYDNTVRTADNEI 859

Query: 769 VQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPA 807
           VQ +YGDD ++ + ME  +G P++F+R    V+   P A
Sbjct: 860 VQLVYGDDSLNASFMEANNG-PVDFERTWSVVQLLYPHA 897



 Score =  365 bits (936), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 200/402 (49%), Positives = 259/402 (64%), Gaps = 35/402 (8%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T +QL  F    +++YR   VE G A+GAI  QS GEP TQMTLKTFHFAGVASM+ITQ
Sbjct: 1040 VTRRQLSHFFDVVYAKYRRSIVEPGEAVGAISGQSFGEPATQMTLKTFHFAGVASMDITQ 1099

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRL 1000
            GVPRIKEIIN    ISTPIIT EL  N +E +ARV KGR+E+TLLG+VA  IK V T  +
Sbjct: 1100 GVPRIKEIINAVPSISTPIITVELLNNQDEISARVCKGRLERTLLGEVAAFIKEVYTPEM 1159

Query: 1001 ASIVIALDMETIQDAHLCINADIVKESIVQTP-KIKLKQQHIKVLDFRKLEIFPP----- 1054
              + + LDME I   +L I  D V+ +I+Q+  K+KLK +H+ +     L I PP     
Sbjct: 1160 CFLDVQLDMEAIHKLYLPITPDSVRRAIIQSKLKLKLKDEHVTISGKSGLRIIPPPPVIT 1219

Query: 1055 ----VDKSKI------------HFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVK 1098
                 D + +            +F L  LK +LP VIV GI TV R V+ + EK    + 
Sbjct: 1220 AAKRFDPASLSLAANRNRGDDQYFTLQRLKEMLPAVIVNGIPTVHRAVLNKVEKPTAHMN 1279

Query: 1099 ENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETM 1158
                     LL++GTGL  VMG  G+D  KT +NH+ E+   LGIEAAR  +I E++ T 
Sbjct: 1280 ---------LLIDGTGLLQVMGTVGVDHTKTVTNHVLEINSVLGIEAARTVLIQEVSNTY 1330

Query: 1159 KAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNG 1218
             ++G+SID RH MLLAD MTF+G+VLG+TRFGI+KM +SV+ LASFEKTADHLF+A+++G
Sbjct: 1331 GSYGLSIDIRHQMLLADCMTFKGQVLGMTRFGIEKMKESVMTLASFEKTADHLFDAALHG 1390

Query: 1219 RDDRIEGVSECIIMGIPMPLGTGILKIRQR----DAVPPMLK 1256
            R D I GVS+ +IMGIP+ +GTG+  I  +      VPPM K
Sbjct: 1391 RRDNIIGVSDRVIMGIPILVGTGVFSIIYKPTNYGVVPPMKK 1432


>gi|45935353|gb|AAS79698.1| RNA polymerase III large subunit [Psilotum nudum]
          Length = 549

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/560 (68%), Positives = 438/560 (78%), Gaps = 18/560 (3%)

Query: 368 MNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 427
           MN+HVPQTEEARTEAL+LMGVQ+NLCTPKNGEILVASTQDFLTSSFLITRKDTFYDR AF
Sbjct: 1   MNLHVPQTEEARTEALMLMGVQSNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRGAF 60

Query: 428 SLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNK 487
            LMC YMGDG + +DLPTPAILKPVELWTGKQLFSVL+RP+A+ RV+VNL V EK YS  
Sbjct: 61  GLMCSYMGDGAEHIDLPTPAILKPVELWTGKQLFSVLVRPNASTRVFVNLVVMEKNYS-- 118

Query: 488 LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
             ++ GD      TMCPNDG+VYFRNSELISGQLGK TLGNGNK+GL+++LLRDY  +A 
Sbjct: 119 --KSGGD------TMCPNDGYVYFRNSELISGQLGKGTLGNGNKNGLFTILLRDYNTYAA 170

Query: 548 SGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL 607
           + CMNRLAKLSARWIGNHGFSIGIDDVQP   LS KK + I E Y  CN+ I  YN+GKL
Sbjct: 171 ASCMNRLAKLSARWIGNHGFSIGIDDVQPGARLSAKKEERIKEGYSNCNMHIHMYNKGKL 230

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
            L+PGC++AQTLE+ IT  LN+IRE AGK C+  L WRNSPLIMSQCGSKGSPINISQM+
Sbjct: 231 TLQPGCNSAQTLESEITGELNKIREVAGKVCLEELHWRNSPLIMSQCGSKGSPINISQMI 290

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           ACVGQQSVGG RAPNGFIDRSLPHFPR  K P AKGFVANSFYSGL+ATEFFFHTMGGRE
Sbjct: 291 ACVGQQSVGGHRAPNGFIDRSLPHFPRHDKSPQAKGFVANSFYSGLTATEFFFHTMGGRE 350

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GLVDTAVKTA+TGYMSRRL+K+LEDL   YD +VRN  G IVQ LYGDDG DP NMEGK 
Sbjct: 351 GLVDTAVKTAETGYMSRRLMKSLEDLYTHYDGTVRNGSGGIVQLLYGDDGRDPINMEGKD 410

Query: 788 GEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG---KESCSEAFLNSLRKF 844
           G PLN +RL++K KA CP  G   L P +  E VE +L  +    +  CS AF  SL +F
Sbjct: 411 GTPLNLERLMLKTKAICPAFGASALPPLEYLEKVEGRLGMHDMTPEGGCSMAFKQSLAEF 470

Query: 845 FEGQQDKLDKKIKFVEDIG-WDDKSQI---LEEVTHKTSGITEKQLEVFIQTCFSRYRVK 900
            E     + K+I+ +  +  ++ K +     E +     G+T +QLEVF++TC  RY  K
Sbjct: 471 MEKNIFAV-KRIRSILGLPLYNSKEEFDLHKERLAANICGLTARQLEVFLETCIRRYHSK 529

Query: 901 RVEAGTAIGAIGAQSIGEPG 920
           R+E G A+GAIGAQSIGEPG
Sbjct: 530 RMEPGAAVGAIGAQSIGEPG 549


>gi|45935335|gb|AAS79689.1| RNA polymerase III large subunit [Welwitschia mirabilis]
          Length = 548

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/559 (69%), Positives = 437/559 (78%), Gaps = 17/559 (3%)

Query: 368 MNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 427
           MN+HVPQTEEARTEAL+LMGVQNNLCTPKNG+ILVA+TQDFLTSSFLITRKDTFYDRAAF
Sbjct: 1   MNLHVPQTEEARTEALMLMGVQNNLCTPKNGDILVAATQDFLTSSFLITRKDTFYDRAAF 60

Query: 428 SLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNK 487
           SLMC YMGD  + +DLPTPAILKP+ELWTGKQLFSVL+RP+A MRV+VNL V EK YS  
Sbjct: 61  SLMCSYMGDATESIDLPTPAILKPIELWTGKQLFSVLVRPNAKMRVFVNLMVMEKNYSKS 120

Query: 488 LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
                       ETMCPNDG VYFRNSELISGQLGKATLGNGNK+GL++VLLRDY A+A 
Sbjct: 121 -----------GETMCPNDGCVYFRNSELISGQLGKATLGNGNKNGLFTVLLRDYNAYAA 169

Query: 548 SGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL 607
           + CMNRLAKLSARWIGNHGFSIGIDDVQP   LS +K + I E Y  C + I  YN+GKL
Sbjct: 170 ASCMNRLAKLSARWIGNHGFSIGIDDVQPGARLSSQKEERIKEGYSKCGMHIDLYNKGKL 229

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
            L+PGC+AAQTLEA IT  LN+IRE AG  C+  L WRNSPLIMSQCGSKGSPINISQM+
Sbjct: 230 SLQPGCNAAQTLEAEITGELNKIREIAGSVCLKELHWRNSPLIMSQCGSKGSPINISQMI 289

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           ACVGQQSVGGRRAPNGFIDRSLPHFPR  K PAAKGFVANSFYSGL+ATEFFFHTMGGRE
Sbjct: 290 ACVGQQSVGGRRAPNGFIDRSLPHFPRNDKPPAAKGFVANSFYSGLTATEFFFHTMGGRE 349

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GLVDTAVKTA+TGYMSRRL+KALEDLS  YD +VR+A   IVQF+YGDDGMDP +MEGK 
Sbjct: 350 GLVDTAVKTAETGYMSRRLMKALEDLSAHYDGTVRSANSAIVQFVYGDDGMDPVHMEGKD 409

Query: 788 GEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAA---YGKESCSEAFLNSLRKF 844
           G PLN DRLLMK KA CP  G   L   ++S  V ++L+      +  CS AF NSL  F
Sbjct: 410 GAPLNLDRLLMKTKAICPANGYDALPCSEISRKVHERLSQPDMQPEAGCSAAFKNSLLTF 469

Query: 845 FEG---QQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKR 901
            E       K+   +   E+     +  +LE+      G T +QLEVF++TC  RY  KR
Sbjct: 470 LENYIVSVRKVRSALGLPEEKNDSQEHNVLEKTVANICGFTSRQLEVFLETCIKRYHSKR 529

Query: 902 VEAGTAIGAIGAQSIGEPG 920
           +EAG A+GAIGAQSIGEPG
Sbjct: 530 MEAGAAVGAIGAQSIGEPG 548


>gi|116201487|ref|XP_001226555.1| hypothetical protein CHGG_08628 [Chaetomium globosum CBS 148.51]
 gi|88177146|gb|EAQ84614.1| hypothetical protein CHGG_08628 [Chaetomium globosum CBS 148.51]
          Length = 1290

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/762 (50%), Positives = 526/762 (69%), Gaps = 16/762 (2%)

Query: 65  FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIA 121
           F  A  +T E +     A   LNP+ VL LF+ ++ TDCE+L L     RP+  +   + 
Sbjct: 82  FNQAKKYTPELEKHTRKAMEDLNPLKVLNLFRAISQTDCELLGLDPSEGRPDMFLWQYLP 141

Query: 122 VPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEV 181
            PPI IRPSV  + + SNE+DIT +L  II     L++ L +  +    +  WE LQ++V
Sbjct: 142 APPICIRPSVAQENA-SNEDDITSKLSEIILYAGHLRESLKKGVALPVIMEQWEFLQLQV 200

Query: 182 AQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKI 241
             Y+NSDV G+ +     +P+ GF QRLKGKQGRFRGNLSGKRV+++GRTVISPDPNL I
Sbjct: 201 GMYVNSDVPGL-YQPGFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSI 259

Query: 242 TEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA---RVLYGK 298
            +VA+P  +A+ LTYPERV+  NIEKLR+ +  GP+ +PGA+ I   DG     ++    
Sbjct: 260 EQVAVPELVAKNLTYPERVNHANIEKLRERVITGPNIWPGAQGIIKKDGAKYNLKIGNES 319

Query: 299 FRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNP 358
            R + A  L+ G +V+RHLED DVVLFNRQPSLH++SIM H A+I PWRT R NE VC P
Sbjct: 320 LREKHANNLEHGDVVERHLEDNDVVLFNRQPSLHKLSIMSHLAKIRPWRTFRLNECVCTP 379

Query: 359 YNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK 418
           YNADFDGDEMN+HVPQTEEAR EA+ LMGV++NL TPKNGE ++A+TQDF+T+++L++ K
Sbjct: 380 YNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLVTPKNGEPIIAATQDFITAAYLLSSK 439

Query: 419 DTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLT 478
           D F+DRA+F+ +C  M  G   ++LP PAI+KP  LWTGKQ+F+VL+RP+    V VNL 
Sbjct: 440 DIFFDRASFTYVCTQMLLGDTHLELPPPAIIKPRALWTGKQIFNVLMRPNKESPVLVNLE 499

Query: 479 VKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL 538
            K K +  K       ++ +I  M  +D F+  RNSE++ G++ KAT+G G K+ ++ V+
Sbjct: 500 AKNKVFFKK-------KDGQIPDMDIDDAFLVVRNSEVMCGRMDKATVGGGKKNSVFYVI 552

Query: 539 LRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVK 598
           LRD+G    +  MNRL+KL AR +   GFSIG+ DV P   L+  K +L+ + Y  C+  
Sbjct: 553 LRDFGPDHAAVAMNRLSKLCARTLSLRGFSIGVGDVWPSGSLTSHKAQLVEDAYNKCDDL 612

Query: 599 IKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKG 658
           I+ Y +GKL+  PGC+  +TLE  I+ IL+++R+ AG  C+G+L   N+PLIM++ GSKG
Sbjct: 613 IETYRQGKLEKAPGCNLEETLENSISGILSKVRQQAGNYCVGNLSKNNAPLIMAKSGSKG 672

Query: 659 SPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEF 718
           S IN++QMVACVGQQ +GG+R P+GF DRSLPHF + A++P +KGFV NSFY+GL  TEF
Sbjct: 673 SDINVAQMVACVGQQIIGGKRVPDGFQDRSLPHFHKNARQPPSKGFVRNSFYTGLVPTEF 732

Query: 719 FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
            FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS QYD++VR + G IVQF YG D +
Sbjct: 733 LFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSEGGIVQFQYGADRL 792

Query: 779 DPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEI 820
           DP +MEG + +P++F R     ++         L P ++ ++
Sbjct: 793 DPVDMEGDA-KPVDFTRTWNHAQSITWSNSDTSLLPWEIQKL 833



 Score =  195 bits (495), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 199/372 (53%), Gaps = 66/372 (17%)

Query: 817  VSEIVEKQLAAYGKESCS--EAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQI---L 871
            V+E  E  + A+G E C   E  L  LR+    ++D LD+  +         +++I    
Sbjct: 929  VAEGSEMDVDAHG-EPCQPLEYVLRDLRREI-NEEDDLDETAR---------QARIQAKA 977

Query: 872  EEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 931
            ++  ++ + ++E+ L  FIQ C  +Y+  RVE G A+GA+GAQSIGEPGTQMTLKTFHFA
Sbjct: 978  QDHVNRVAKVSERTLRQFIQMCLHKYKKARVEPGHAVGAVGAQSIGEPGTQMTLKTFHFA 1037

Query: 932  GVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKS 991
            GVA M+ITQGVPRIKEIIN +K ISTP+I+ ELE   +  AARVVKGRIEKT +  +   
Sbjct: 1038 GVAGMSITQGVPRIKEIINASKTISTPVISCELENRVDIKAARVVKGRIEKTYVSDIISF 1097

Query: 992  IKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR---- 1047
            +       +A IV+ +D++ + D  L I+   + ++IV+  K+KLK   ++  D R    
Sbjct: 1098 VDDEWLPDVAKIVLQVDLQALSDMQLGISMKDIADAIVRAKKLKLK---VEPEDLRIGRD 1154

Query: 1048 KLEIF-----------------------------PPVDKSKIHFELYS--LKNVLPMVIV 1076
            ++E+                                +D+S   F+L    LK +LP V++
Sbjct: 1155 RVEVIVRNTWQDVTAARKAARVRAAAVEKGHIMSSALDESAADFQLRVNFLKRMLPQVVI 1214

Query: 1077 KGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF- 1135
             G     R +I           +  +K ++ +LVEG GL+A M  EG+ G K  +N +  
Sbjct: 1215 SGYPDAARAII-----------QTDDKNEHMVLVEGYGLRACMTTEGVIGTKCVTNSVMR 1263

Query: 1136 EVQQTLGIEAAR 1147
            + +  LGI   R
Sbjct: 1264 KCRDVLGIRGGR 1275


>gi|214028082|gb|ACJ63310.1| RNA polymerase III large subunit [Liriodendron tulipifera]
          Length = 546

 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/558 (70%), Positives = 444/558 (79%), Gaps = 19/558 (3%)

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           ++VPQTEEARTEAL+LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL
Sbjct: 1   LYVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 60

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           MC YMGDGMD +DLPTPA+LKP+ELWTGKQLFSVLIRPHA MRVY+NLT+ E+ Y     
Sbjct: 61  MCSYMGDGMDPIDLPTPALLKPIELWTGKQLFSVLIRPHARMRVYLNLTLTERIY----- 115

Query: 490 RTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSG 549
               D+    +TMCPNDG+VYFRNSEL+ GQLGKATLGNGNKDGL+SVLLRDYGAHA + 
Sbjct: 116 ----DKSKDKKTMCPNDGYVYFRNSELLCGQLGKATLGNGNKDGLFSVLLRDYGAHAAAS 171

Query: 550 CMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQL 609
           CMNRLAKLSARWIGNHGFSIGIDDVQP + L+  K   I + Y+ C+  I  YN G L+L
Sbjct: 172 CMNRLAKLSARWIGNHGFSIGIDDVQPGEHLNRNKKLEIEKGYKECDDLINRYNTGGLKL 231

Query: 610 KPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVAC 669
            PGC+AAQTLE+ IT  LN IRE A K CM SL WRNSPLIMSQCGSKGSPINISQMVAC
Sbjct: 232 LPGCNAAQTLESNITGKLNDIREAAAKVCMASLHWRNSPLIMSQCGSKGSPINISQMVAC 291

Query: 670 VGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
           VGQQSVGGRRAPNGFIDRSLPHFP  +K P+AKGFVANSFY+GL+ATEFFFHTMGGREGL
Sbjct: 292 VGQQSVGGRRAPNGFIDRSLPHFPINSKTPSAKGFVANSFYTGLTATEFFFHTMGGREGL 351

Query: 730 VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGE 789
           VDTAVKTA+TGYMSRRL+K+LEDLS  YD +VRN+ G IVQ LYGDDGMDPANMEGK G 
Sbjct: 352 VDTAVKTAETGYMSRRLMKSLEDLSTYYDETVRNSSGGIVQLLYGDDGMDPANMEGKEGM 411

Query: 790 PLNFDRLLMKVKATCPPA-GQRYLSPQQVSEIVEKQLAAYG---KESCSEAFLNSLRKFF 845
           PLN DRL MK KAT P       LSP ++ +  + +L+ +    +  CS AF  SL  F 
Sbjct: 412 PLNLDRLFMKTKATFPATRAHTSLSPSEILKAADDRLSKHDMTPEGGCSAAFKESLSDFL 471

Query: 846 EGQQDKLDKKIKFVEDIGWDD---KSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRV 902
           +     L K  +   ++G D+   +  +LE V    SGIT +QL+VF++TC  RY +KR+
Sbjct: 472 KKCVVALRKTRR---ELGLDEDKVREHVLENVAANISGITSQQLQVFLETCIHRYHLKRL 528

Query: 903 EAGTAIGAIGAQSIGEPG 920
           EAG AIGAIGAQSIGEPG
Sbjct: 529 EAGAAIGAIGAQSIGEPG 546


>gi|45935341|gb|AAS79692.1| RNA polymerase III large subunit [Taxus canadensis]
          Length = 546

 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/558 (69%), Positives = 440/558 (78%), Gaps = 17/558 (3%)

Query: 368 MNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 427
           MN+HVPQTEEARTEAL+LMGVQNNLCTPKNGEIL+ASTQDFLTSSFLITRKDTFYDRAAF
Sbjct: 1   MNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILIASTQDFLTSSFLITRKDTFYDRAAF 60

Query: 428 SLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNK 487
           SLMC YMGD  + +DLPTPAILKP+ELWTGKQLF+VL+RP+A MRV+VNL V EK YS  
Sbjct: 61  SLMCSYMGDASEHIDLPTPAILKPIELWTGKQLFTVLVRPNAKMRVFVNLIVMEKNYSKS 120

Query: 488 LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
                       ETMCPNDG V+FRNSEL+SGQLGKATLGNGNK+GL++VLLRDY +HA 
Sbjct: 121 -----------GETMCPNDGRVFFRNSELLSGQLGKATLGNGNKNGLFTVLLRDYNSHAA 169

Query: 548 SGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL 607
           + CMNRLAKLSARWIGNHGFSIGIDDVQP   LS KK + I E Y  CN+ I  YN+GKL
Sbjct: 170 ACCMNRLAKLSARWIGNHGFSIGIDDVQPGTRLSAKKEEQIREGYSKCNMHIDLYNKGKL 229

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
            L+PGC+AAQTLE+ IT  LN+IRE AG  C+  L WRNSPLIMS CGSKGSPINISQM+
Sbjct: 230 TLQPGCNAAQTLESEITGELNKIREIAGSICLKELHWRNSPLIMSLCGSKGSPINISQMI 289

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           ACVGQQSVGGRRAPNGFIDRSLPHFPR  K PAAKGFVANSFYSGL+ATEFFFHTMGGRE
Sbjct: 290 ACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYSGLTATEFFFHTMGGRE 349

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GLVDTAVKTA+TGYMSRRL+KALEDLS  YD +VRN+ G +VQFLYGDDGMDP NMEGK 
Sbjct: 350 GLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRNSSGGVVQFLYGDDGMDPVNMEGKE 409

Query: 788 GEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG--KESCSEAFLNSLRKFF 845
             PLN +RLLMK KA CP    R LS  ++   VE +LA +    E C + F NS+  FF
Sbjct: 410 SAPLNLERLLMKTKAICPANRSRALSVTEIIRKVEDRLAMHDMQAEECYK-FKNSMSAFF 468

Query: 846 EGQQDKLDKK---IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRV 902
           E   D + K    +    D    +   ILE +  + SG+T +Q EVFI+TC  R  +K++
Sbjct: 469 EKCADSIRKTRSVLGLCPDANDKEDPSILEGIAAEISGLTPRQFEVFIETCIKRCHLKKM 528

Query: 903 EAGTAIGAIGAQSIGEPG 920
           EAG A+GA+GAQSIGEPG
Sbjct: 529 EAGAAVGAVGAQSIGEPG 546


>gi|45935339|gb|AAS79691.1| RNA polymerase III large subunit [Thuja occidentalis]
          Length = 546

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/559 (69%), Positives = 442/559 (79%), Gaps = 19/559 (3%)

Query: 368 MNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 427
           MN+HVPQTEEARTEAL LMGVQNNLCTPKNGEIL+ASTQDFLTSSFLITRKDTFYDRAAF
Sbjct: 1   MNLHVPQTEEARTEALTLMGVQNNLCTPKNGEILIASTQDFLTSSFLITRKDTFYDRAAF 60

Query: 428 SLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNK 487
            LMC YMGD  + +DLPTPAILKP+ELWTGKQLF+VL+RP+A MRV+VNL V EK YS  
Sbjct: 61  LLMCTYMGDASEHIDLPTPAILKPIELWTGKQLFTVLVRPNAKMRVFVNLIVMEKNYSKS 120

Query: 488 LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
                       ETMCPNDG VYFRNSEL+SGQ+GKATLGNGNKDGL+++LLRDY +HA 
Sbjct: 121 -----------GETMCPNDGCVYFRNSELLSGQIGKATLGNGNKDGLFTILLRDYNSHAA 169

Query: 548 SGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL 607
           + CMNRLAKLSARWIGNHGFSIGIDDVQP   LS KK + I E Y  C++ I  YN+GKL
Sbjct: 170 ACCMNRLAKLSARWIGNHGFSIGIDDVQPGTRLSAKKEEQIREGYSKCDMHIDLYNKGKL 229

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
            L+PGC+AAQTLEA I+ +LNRIRE AG  C+  L WRNSPLIMS CGSKGSPINISQM+
Sbjct: 230 TLQPGCNAAQTLEAEISGVLNRIREIAGSICLKELHWRNSPLIMSLCGSKGSPINISQMI 289

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           ACVGQQSVGGRRAPNGFIDRSLPHFPR  K PAAKGFVANSFYSGL+ATEFFFHTMGGRE
Sbjct: 290 ACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYSGLTATEFFFHTMGGRE 349

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GLVDTAVKTA+TGYMSRRL+KALEDLS  YD +VRNA G +VQFLYGDDGMDP NMEGK 
Sbjct: 350 GLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRNASGGVVQFLYGDDGMDPVNMEGKD 409

Query: 788 GEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAA--YGKESCSEAFLNSLRKFF 845
           G PLN +RLLMK KA CP  G   LS  ++   VE++L       E C + F  +L +FF
Sbjct: 410 GAPLNLERLLMKTKAICPAGGSCALSVSEILRKVEERLEMDDLQTEECYK-FKIALLEFF 468

Query: 846 EGQQDKLDKKIKFVEDIGWD----DKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKR 901
           +   D + +K + V  +  D    +   ++E +  + SG T +Q EVFI+TC  RY +K+
Sbjct: 469 QKCADSM-RKTRSVLGLSLDATGKENPSVIERIAAEISGFTMRQFEVFIETCIKRYHLKK 527

Query: 902 VEAGTAIGAIGAQSIGEPG 920
           +EAG A+GAIGAQSIGEPG
Sbjct: 528 MEAGAAVGAIGAQSIGEPG 546


>gi|214028078|gb|ACJ63308.1| RNA polymerase III large subunit [Drimys winteri]
          Length = 547

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/558 (67%), Positives = 436/558 (78%), Gaps = 18/558 (3%)

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +HVPQTEEARTEAL+LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDR  F L
Sbjct: 1   LHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRDTFCL 60

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           MC +MGD M+ +DLPTPA++KP+ELWTGKQ+FSVLIRP A+MRVYVNLTV EK YS    
Sbjct: 61  MCSFMGDVMEHIDLPTPALIKPMELWTGKQIFSVLIRPQAHMRVYVNLTVVEKNYSKSG- 119

Query: 490 RTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSG 549
                     ET CP DG+VYFRNSELI GQLGKATLGNGNKDGL+SVLLRDY AHA + 
Sbjct: 120 ----------ETRCPKDGYVYFRNSELICGQLGKATLGNGNKDGLFSVLLRDYDAHAAAS 169

Query: 550 CMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQL 609
           CMNRLA+LSARWIG+HGFSIGI+DVQP + L+ +K   I + YE C+  I  YN+G L L
Sbjct: 170 CMNRLAELSARWIGDHGFSIGIEDVQPDEHLNHQKKTTIEKGYEECDNLILSYNKGTLAL 229

Query: 610 KPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVAC 669
           + GC+AAQTLE+ IT +LN++R+ A   CM +L WRNSPLIMS CGSKGSPINISQMVAC
Sbjct: 230 QSGCNAAQTLESRITGVLNKVRDTAANVCMDTLHWRNSPLIMSCCGSKGSPINISQMVAC 289

Query: 670 VGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
           VGQQSVGGRRAP+GFI+RSLPHF R +K PAAKGFVANSFYSGL+ TEF FHTMGGREGL
Sbjct: 290 VGQQSVGGRRAPDGFINRSLPHFHRNSKTPAAKGFVANSFYSGLTPTEFLFHTMGGREGL 349

Query: 730 VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGE 789
           VDTAVKTA+TGYMSRRL+KALEDLSI YD +VRNA G IVQF YGDDGMDPA MEGKSG 
Sbjct: 350 VDTAVKTAETGYMSRRLMKALEDLSIHYDETVRNASGGIVQFHYGDDGMDPAKMEGKSGT 409

Query: 790 PLNFDRLLMKVKATCPPAGQRY-LSPQQVSEIVEKQLA---AYGKESCSEAFLNSLRKFF 845
           PLN DRL MK++ATCP       LSP ++S+    +L+   A  +  CS AF   L  F 
Sbjct: 410 PLNLDRLFMKIQATCPTTNASIPLSPSEISQYANDRLSKHDATPEGGCSSAFKQMLLDFI 469

Query: 846 EGQQDKL---DKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRV 902
             +   L    + ++  ++ G D    +L+ +  K   I+ +QL+VF++ C SRY +KR+
Sbjct: 470 HEKIATLRNVSRILQIDDNYGGDSDGDMLQTIAAKIFSISSQQLKVFLEACISRYHLKRI 529

Query: 903 EAGTAIGAIGAQSIGEPG 920
           EAGTAIGAIGAQSIGEPG
Sbjct: 530 EAGTAIGAIGAQSIGEPG 547


>gi|378732247|gb|EHY58706.1| DNA-directed RNA polymerase III subunit C1 [Exophiala dermatitidis
           NIH/UT8656]
          Length = 1581

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/829 (47%), Positives = 547/829 (65%), Gaps = 31/829 (3%)

Query: 17  SIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKVTESL------------- 62
           +IV+K +    K   C  CG ING+V+KA  + L I HD+ K   S              
Sbjct: 151 AIVRKVADQCRKTKVCFECGAINGLVRKAGTSALKISHDKFKAFNSSTAAKKQPPPEKIE 210

Query: 63  --QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL-SERPEKLIITN 119
             + F +A    +E +  +  A   LNP+ VL LF+R+  +D E+L L S +PE  +   
Sbjct: 211 FDKSFETAKESNQELEKHLKKAMDDLNPLRVLKLFRRIRRSDRELLGLRSAKPEDFLWLY 270

Query: 120 IAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQV 179
           I  PP+ IRPSV  +G+ S E+DIT +L  I+  N +L++ + +       +  W+ L +
Sbjct: 271 IPAPPVCIRPSVGQEGA-STEDDITAKLGDIVAANNALREAIEKGAPVQSVVEHWDYLTL 329

Query: 180 EVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
            +A YINSDV G+    +  + + GFVQRLKGKQGRFRGNLSGKRV+++GRTVISPDPNL
Sbjct: 330 NLAMYINSDVPGLA-KGEFGKQIRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNL 388

Query: 240 KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL--YG 297
           +I EVA+PI +A+ +TYPE V++ NIEKLRQ ++NG   +PGA  +  PDG  R+   +G
Sbjct: 389 RIDEVAVPILVAKNMTYPEVVNEINIEKLRQRVRNGTKVWPGANYVYKPDGDFRIFLKFG 448

Query: 298 KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCN 357
           K    +A ELK G IV+RHLEDGD+VLFNRQPSLH++SI+ H  ++ P RT R NE VCN
Sbjct: 449 K-PELIAKELKEGDIVERHLEDGDIVLFNRQPSLHKLSILSHFVKVRPHRTFRLNECVCN 507

Query: 358 PYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR 417
           PYNADFDGDEMN+HVPQTEEARTEA LLMGV++N+ TPKNGE ++++ QDF+T+SFL++ 
Sbjct: 508 PYNADFDGDEMNLHVPQTEEARTEATLLMGVKHNIVTPKNGEPIISAIQDFITASFLLSS 567

Query: 418 KDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNL 477
            D F+D+  F  MC  M +   + +LP PA++KP  LWTGKQ+FSV++RP+    V VNL
Sbjct: 568 LDQFFDKKTFVTMCIGMLEPDTKFELPPPAVIKPQTLWTGKQVFSVMLRPNKQSPVTVNL 627

Query: 478 TVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
               + +S        D +        +D F+  RNSE++ G++ KAT+G+G K+ ++ +
Sbjct: 628 DAASRDHSQYHPGLHRDLQ--------DDSFLCIRNSEVLCGRMDKATVGSGKKNSVFYI 679

Query: 538 LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNV 597
           L RD+G  A +  MNRL+KL ARW+GN GF++GI DV P   L   K ++I++ +E C  
Sbjct: 680 LYRDFGPDAAAQGMNRLSKLCARWLGNQGFTVGISDVTPPDPLVKAKHEMIAKVFEECKA 739

Query: 598 KIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSK 657
            ++   EGKL+ KPG D A TLEA    IL+ +R +        L  RNSP++M+  GSK
Sbjct: 740 FVRLSKEGKLKRKPGLDDAGTLEAEQIRILSTVRTNIAGLLTAQLSKRNSPMVMAISGSK 799

Query: 658 GSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATE 717
           GS IN++QM A +GQQ + G+R  +GF DR+LPHF +  + P +KGF++NSF+SGL   E
Sbjct: 800 GSNINVAQMAALLGQQDIEGKRVQDGFQDRTLPHFAKHERSPPSKGFISNSFFSGLLPYE 859

Query: 718 FFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDG 777
           F FH +GGR GLVDTAVKTA+TGYMSRRL+K+LEDLS QYD +VRN+   IVQF +GDD 
Sbjct: 860 FLFHAVGGRVGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDRTVRNSASNIVQFRFGDDE 919

Query: 778 MDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLA 826
           +DP +ME  S +P++FDR    V+AT     +  LS  ++  I+E+ LA
Sbjct: 920 LDPVDMEA-SAKPVDFDRTFAHVEATTFDMNEPGLSDTEMHAILEEILA 967



 Score =  279 bits (714), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 178/450 (39%), Positives = 249/450 (55%), Gaps = 84/450 (18%)

Query: 878  TSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN 937
            T  ++E+ L  FI  C  +Y   R E   A+GA+GAQSIGEPGTQMTLKTFHFAGVA M+
Sbjct: 1100 TCKVSERTLRAFINLCLEKYERARTEPAHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMS 1159

Query: 938  ITQGVPRIKEIINGAKRISTPIITAELECNDN----ENAARVVKGRIEKTLLGQVAKSIK 993
            +T GVPRIKEIIN +K ISTP+IT  LE   +    E+ AR+VKGRIE   L  +   I+
Sbjct: 1160 LTAGVPRIKEIINASKDISTPVITCRLERRRDLTIPESLARIVKGRIECLYLEDITSFIQ 1219

Query: 994  IVMT-SRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIF 1052
            I  +  + + IV+ + ++TI +  L +    +  +I +  ++K  +  I++    +L+I 
Sbjct: 1220 ISHSLDKPSCIVLKISLDTIIELGLDLTLTDICNAIQKHRQLKAAKLRIQIRGKDELKIH 1279

Query: 1053 --PPVDKSKIH--------------FELYSLKNVLPMVIVKGIKTVER-VVIAEKEKEKR 1095
               P+  +K                  L +L+ VLP V + G  T  R VV+AE +    
Sbjct: 1280 SDAPIKSTKRGAAARIDEDGQTERLIRLQTLRRVLPSVHILGHPTATRAVVMAEDDPRSD 1339

Query: 1096 KVK---------------------------------ENGEKKK----------------- 1105
            ++K                                 ENG+ ++                 
Sbjct: 1340 EIKALRRATERAKAEKEKEKQKQRAITLSTEPEIKSENGDDQEKGVKVEEPTEPALPKAA 1399

Query: 1106 ----------YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEIN 1155
                      +R++VEG GL+  M  EG+D   T +N + E  Q LGIEAAR  II EI 
Sbjct: 1400 AVDDGKPVQMHRVMVEGYGLRYCMNTEGVDPYHTHTNSVIETLQVLGIEAARSKIILEIQ 1459

Query: 1156 ETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAS 1215
            E MK+  +SID RHM LLAD+MT++GEVLGITRFG+ KM  SVL LASFEKTADH+F+A 
Sbjct: 1460 EVMKS--LSIDPRHMSLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHVFDAG 1517

Query: 1216 VNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            + G+ D+IEGVSE +I+G  M +GTG++++
Sbjct: 1518 IAGKVDKIEGVSESVIVGKTMGVGTGMVEV 1547


>gi|45935345|gb|AAS79694.1| RNA polymerase III large subunit [Pinus nigra]
          Length = 548

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/563 (69%), Positives = 439/563 (77%), Gaps = 25/563 (4%)

Query: 368 MNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 427
           MN+HVPQTEEARTEAL+LMGVQNNLCTPKNG+ILVASTQDFLTSSFLITRKDTFYDRA+F
Sbjct: 1   MNLHVPQTEEARTEALMLMGVQNNLCTPKNGDILVASTQDFLTSSFLITRKDTFYDRASF 60

Query: 428 SLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNK 487
           +LMC YMGD  + +DLPTPAILKPVELWTGKQLFSVL+RP+ANMRV+VNL V EK YS  
Sbjct: 61  ALMCSYMGDATEAIDLPTPAILKPVELWTGKQLFSVLVRPNANMRVFVNLIVMEKNYSKS 120

Query: 488 LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
                       ETMC NDG V FRNSELISGQ+GKATLGNGNK+GL++VLLRDY  HA 
Sbjct: 121 -----------GETMCRNDGCVCFRNSELISGQIGKATLGNGNKNGLFTVLLRDYNTHAA 169

Query: 548 SGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL 607
           + CMNRLAKLSARWIGNHGFSIGIDDVQP   L+ +K + I E Y  C++ I  YN+GKL
Sbjct: 170 ASCMNRLAKLSARWIGNHGFSIGIDDVQPGARLTAQKEERIREGYNKCDMHIDLYNKGKL 229

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
            L+PGC++AQTLEA IT  LN+IRE AG  C+  L WRNSPLIMSQCGSKGSPINISQM+
Sbjct: 230 TLQPGCNSAQTLEAEITGELNKIREIAGSVCLRELHWRNSPLIMSQCGSKGSPINISQMI 289

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           ACVGQQSVGGRRAPNGFIDRSLPHFPR    PAAKGFVANSFY+GL+ATEFFFHTMGGRE
Sbjct: 290 ACVGQQSVGGRRAPNGFIDRSLPHFPRNDMTPAAKGFVANSFYTGLTATEFFFHTMGGRE 349

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GLVDTAVKTA+TGYMSRRL+KALEDLS  YD +VRNA G IVQ LYGDDGMDPA+MEG  
Sbjct: 350 GLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRNASGGIVQLLYGDDGMDPAHMEGND 409

Query: 788 GEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKE---SCSEAFLNSLRKF 844
           G PLN DRLLMK KATCP  G   LS  ++S  VE +L  +  +    CS AF  SL +F
Sbjct: 410 GAPLNMDRLLMKTKATCPRKGSCALSLVEISRKVEDRLLMHDMQLEGGCSAAFSRSLSEF 469

Query: 845 FEGQQDKLDKKIKFVE-------DIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRY 897
           F     K    I+          D   +  S +LE +  + SG+T +Q +VFI+TC  RY
Sbjct: 470 F----GKCISSIRHTRSLLGLPMDANGEHGSSVLERIAAEISGLTPRQFQVFIETCIKRY 525

Query: 898 RVKRVEAGTAIGAIGAQSIGEPG 920
             KR+EAG A+GAIGAQSIGEPG
Sbjct: 526 HSKRMEAGAAVGAIGAQSIGEPG 548


>gi|221482258|gb|EEE20613.1| DNA-directed RNA polymerase III largest subunit, putative [Toxoplasma
            gondii GT1]
          Length = 1747

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/806 (49%), Positives = 527/806 (65%), Gaps = 29/806 (3%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            +R  + + + K  L K  V+ C     K  KC  CG   G++K+ V              
Sbjct: 226  IRRHQSDPIVKRLLFKRTVEACK----KVSKCFECGAPQGVLKRVV------------KP 269

Query: 61   SLQEFASAITHTKESKAAVNVATYI-LNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITN 119
            SL +F   I H  +SK    +     L+P+ V  L +R+  ++CE+L +   PEKL+++ 
Sbjct: 270  SLDQFMK-IRHVVKSKEGRAMTVEDDLDPLYVKNLLERIRPSECEILDIVS-PEKLLLSR 327

Query: 120  IAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQV 179
            + VPP  IRPSV +    + E+D+T  L  I + N  LQ  +       + L  WE LQ+
Sbjct: 328  LLVPPSCIRPSVTIGEQGTTEDDLTCVLSDIAELNNVLQSHVQAGFHTNQFLGIWEFLQL 387

Query: 180  EVAQYINSDVRGVP---FSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPD 236
            +  + IN+D   V     S  +++P  G  QRLKGK+GRFRGNLSGKRV+++GRTVISPD
Sbjct: 388  QCTRLINADAPAVSQLLASKNISKPGRGICQRLKGKEGRFRGNLSGKRVDFSGRTVISPD 447

Query: 237  PNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY 296
            PN  + EV +P  +A+ LT+PERV+  NIE LR  +  G   +PGA  +   DG+   L 
Sbjct: 448  PNANVYEVVVPEWVAKRLTFPERVNRVNIEVLRAAVLKGCSDWPGACYVNKVDGSKCSLR 507

Query: 297  GKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 356
               R Q+A  L+ G +V+RHL +GDVVLFNRQPSLHRMSIM HRAR+MPWRT RFNE VC
Sbjct: 508  YANRRQVAENLQIGDVVERHLCNGDVVLFNRQPSLHRMSIMAHRARVMPWRTFRFNECVC 567

Query: 357  NPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
            +PYNADFDGDEMN+H+PQT EAR EAL LMGV NNL TPKNGE L+A+TQDFL+SS+++T
Sbjct: 568  SPYNADFDGDEMNLHLPQTHEARAEALYLMGVVNNLVTPKNGEPLIAATQDFLSSSYMLT 627

Query: 417  RKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
             KD F  R  F L+C Y  DG+ RVDLP P ILKPVELWTGKQ+ SVL+RP+ N  V VN
Sbjct: 628  HKDVFLTRDQFCLICSYFTDGLSRVDLPPPTILKPVELWTGKQVISVLLRPNRNSFVMVN 687

Query: 477  LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
              +KE+ +S   I   G+       MCP+D +V FR+SEL++G +GK  LG+  K GL+ 
Sbjct: 688  FQLKEREFSAARI-PPGEAPF----MCPSDAYVIFRHSELVAGCIGKKVLGDA-KFGLFF 741

Query: 537  VLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCN 596
             L+RD      + CM R+AKLSARW  N G +IGIDDV P   L   K  +++  Y +  
Sbjct: 742  HLIRDNSPAQAAACMGRIAKLSARWFANRGMTIGIDDVTPSPTLLAAKKDILNHGYNLVA 801

Query: 597  VKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
             +I+ Y +G LQ  PGC   QTLE  +  IL+ +R +AGKAC   L   N PLIM   G+
Sbjct: 802  QEIQMYKKGALQPHPGCTLEQTLEVRVKSILDDLRNEAGKACNRVLHPLNKPLIMFNSGA 861

Query: 657  KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
            KG+ INI+QM+ACVGQQ+V G+R  NGF+ R+LPHFP   ++  ++GFVA+SFYSGL   
Sbjct: 862  KGALINIAQMIACVGQQNVSGQRIQNGFVSRTLPHFPLNCRDAKSRGFVASSFYSGLQPD 921

Query: 717  EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDD 776
            EFFFHTM GREGLVDTAVKTA+TGYM RRL+KALEDLSI+YDNSVR + G IVQF+YGDD
Sbjct: 922  EFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIRYDNSVRTSDGQIVQFVYGDD 981

Query: 777  GMDPANMEGKSGEPLNFDRLLMKVKA 802
            G++PA ME K+ + +  D++   + +
Sbjct: 982  GLNPAMMEDKN-QSMCLDKVFQHISS 1006



 Score =  335 bits (858), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 188/396 (47%), Positives = 256/396 (64%), Gaps = 15/396 (3%)

Query: 877  KTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 936
            K   +T + +  F++  + +Y     EAG A+GA+GAQSIGEPGTQMTLKTFHFAGVASM
Sbjct: 1352 KHQWVTVRHILEFLRCSWRKYVKAISEAGEAVGAMGAQSIGEPGTQMTLKTFHFAGVASM 1411

Query: 937  NITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVM 996
            N+T GVPRIKEIIN A++I TPII   L  +++ N A +VK RIEKTLL +    IK V 
Sbjct: 1412 NVTLGVPRIKEIINAAQKIQTPIIVVPLVNDEDYNYAVMVKNRIEKTLLSECCSYIKEVY 1471

Query: 997  TSRLASIVIALDMETIQDAHLCINADIVKESIVQTP---KIKLKQQHIKVLDFRKLEIFP 1053
                A +V+ LD  TI+   L INA+ VK++I++     K+++ +  +++++  K+ + P
Sbjct: 1472 APDGAWLVVKLDQHTIRKLFLDINANTVKDAILRQTAVNKVRITKNSVEIINEWKVRVMP 1531

Query: 1054 PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGT 1113
            P   ++I F+L +LK  L  +++ G K V+R VI  ++ E+    +  +K  Y L VEG 
Sbjct: 1532 P-GGNQIFFQLQALKLGLLNIVLCGHKDVKRGVIKCEQVEQ---PDKTKKTVYGLAVEGY 1587

Query: 1114 GLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1173
            GL+ VMG +G+   +  SNH+ EV Q LGIEAAR  II EI + M A+ M ID RHM LL
Sbjct: 1588 GLRDVMGTQGVKALQATSNHVMEVAQILGIEAARAVIISEIRKCMDAYSMDIDCRHMTLL 1647

Query: 1174 ADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMG 1233
             D+MTFRGEVLGI RFGIQKM  S LMLASFE+T +HLF A+V+ R D ++GVSECIIMG
Sbjct: 1648 GDVMTFRGEVLGINRFGIQKMRASTLMLASFEETNEHLFEAAVHHRADPVKGVSECIIMG 1707

Query: 1234 IPMPLGTGILKIRQRDAVPPMLK--------YGAPD 1261
              + LGTG   +    +  P+          YG P+
Sbjct: 1708 KQVSLGTGSFDLLLSQSGAPLASDYGGVLSAYGLPE 1743


>gi|237842187|ref|XP_002370391.1| DNA-directed RNA polymerase III largest subunit, putative [Toxoplasma
            gondii ME49]
 gi|211968055|gb|EEB03251.1| DNA-directed RNA polymerase III largest subunit, putative [Toxoplasma
            gondii ME49]
 gi|221502846|gb|EEE28560.1| DNA-directed RNA polymerase III largest subunit, putative [Toxoplasma
            gondii VEG]
          Length = 1746

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/806 (49%), Positives = 527/806 (65%), Gaps = 29/806 (3%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            +R  + + + K  L K  V+ C     K  KC  CG   G++K+ V              
Sbjct: 225  IRRHQSDPIVKRLLFKRTVEACK----KVSKCFECGAPQGVLKRVV------------KP 268

Query: 61   SLQEFASAITHTKESKAAVNVATYI-LNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITN 119
            SL +F   I H  +SK    +     L+P+ V  L +R+  ++CE+L +   PEKL+++ 
Sbjct: 269  SLDQFMK-IRHVVKSKEGRAMTVEDDLDPLYVKNLLERIRPSECEILDIVS-PEKLLLSR 326

Query: 120  IAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQV 179
            + VPP  IRPSV +    + E+D+T  L  I + N  LQ  +       + L  WE LQ+
Sbjct: 327  LLVPPSCIRPSVTIGEQGTTEDDLTCVLSDIAELNNVLQSHVKAGFHTNQFLGIWEFLQL 386

Query: 180  EVAQYINSDVRGVP---FSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPD 236
            +  + IN+D   V     S  +++P  G  QRLKGK+GRFRGNLSGKRV+++GRTVISPD
Sbjct: 387  QCTRLINADAPAVSQLLASKNISKPGRGICQRLKGKEGRFRGNLSGKRVDFSGRTVISPD 446

Query: 237  PNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY 296
            PN  + EV +P  +A+ LT+PERV+  NIE LR  +  G   +PGA  +   DG+   L 
Sbjct: 447  PNANVYEVVVPEWVAKRLTFPERVNRVNIEVLRAAVLKGCSDWPGACYVNKVDGSKCSLR 506

Query: 297  GKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 356
               R Q+A  L+ G +V+RHL +GDVVLFNRQPSLHRMSIM HRAR+MPWRT RFNE VC
Sbjct: 507  YANRRQVAENLQIGDVVERHLCNGDVVLFNRQPSLHRMSIMAHRARVMPWRTFRFNECVC 566

Query: 357  NPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
            +PYNADFDGDEMN+H+PQT EAR EAL LMGV NNL TPKNGE L+A+TQDFL+SS+++T
Sbjct: 567  SPYNADFDGDEMNLHLPQTHEARAEALYLMGVVNNLVTPKNGEPLIAATQDFLSSSYMLT 626

Query: 417  RKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
             KD F  R  F L+C Y  DG+ RVDLP P ILKPVELWTGKQ+ SVL+RP+ N  V VN
Sbjct: 627  HKDVFLTRDQFCLICSYFTDGLSRVDLPPPTILKPVELWTGKQVISVLLRPNRNSFVMVN 686

Query: 477  LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
              +KE+ +S   I   G+       MCP+D +V FR+SEL++G +GK  LG+  K GL+ 
Sbjct: 687  FQLKEREFSAARI-PPGEAPF----MCPSDAYVIFRHSELVAGCIGKKVLGDA-KFGLFF 740

Query: 537  VLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCN 596
             L+RD      + CM R+AKLSARW  N G +IGIDDV P   L   K  +++  Y +  
Sbjct: 741  HLIRDNSPAQAAACMGRIAKLSARWFANRGMTIGIDDVTPSPTLLAAKKDILNHGYNLVA 800

Query: 597  VKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
             +I+ Y +G LQ  PGC   QTLE  +  IL+ +R +AGKAC   L   N PLIM   G+
Sbjct: 801  QEIQMYKKGALQPHPGCTLEQTLEVRVKSILDDLRNEAGKACNRVLHPLNKPLIMFNSGA 860

Query: 657  KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
            KG+ INI+QM+ACVGQQ+V G+R  NGF+ R+LPHFP   ++  ++GFVA+SFYSGL   
Sbjct: 861  KGALINIAQMIACVGQQNVSGQRIQNGFVSRTLPHFPLNCRDAKSRGFVASSFYSGLQPD 920

Query: 717  EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDD 776
            EFFFHTM GREGLVDTAVKTA+TGYM RRL+KALEDLSI+YDNSVR + G IVQF+YGDD
Sbjct: 921  EFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIRYDNSVRTSDGQIVQFVYGDD 980

Query: 777  GMDPANMEGKSGEPLNFDRLLMKVKA 802
            G++PA ME K+ + +  D++   + +
Sbjct: 981  GLNPAMMEDKN-QSMCLDKVFQHISS 1005



 Score =  335 bits (859), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 188/396 (47%), Positives = 256/396 (64%), Gaps = 15/396 (3%)

Query: 877  KTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 936
            K   +T + +  F++  + +Y     EAG A+GA+GAQSIGEPGTQMTLKTFHFAGVASM
Sbjct: 1351 KHQWVTVRHILEFLRCSWRKYVKAISEAGEAVGAMGAQSIGEPGTQMTLKTFHFAGVASM 1410

Query: 937  NITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVM 996
            N+T GVPRIKEIIN A++I TPII   L  +++ N A +VK RIEKTLL +    IK V 
Sbjct: 1411 NVTLGVPRIKEIINAAQKIQTPIIVVPLVNDEDYNYAVMVKNRIEKTLLSECCSYIKEVY 1470

Query: 997  TSRLASIVIALDMETIQDAHLCINADIVKESIVQTP---KIKLKQQHIKVLDFRKLEIFP 1053
                A +V+ LD  TI+   L INA+ VK++I++     K+++ +  +++++  K+ + P
Sbjct: 1471 APDGAWLVVKLDQHTIRKLFLDINANTVKDAILRQTAVNKVRITKNSVEIINEWKVRVMP 1530

Query: 1054 PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGT 1113
            P   ++I F+L +LK  L  +++ G K V+R VI  ++ E+    +  +K  Y L VEG 
Sbjct: 1531 P-GGNQIFFQLQALKLGLLNIVLCGHKDVKRGVIKCEQVEQ---PDKTKKTVYGLAVEGY 1586

Query: 1114 GLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1173
            GL+ VMG +G+   +  SNH+ EV Q LGIEAAR  II EI + M A+ M ID RHM LL
Sbjct: 1587 GLRDVMGTQGVKALQATSNHVMEVAQILGIEAARAVIISEIRKCMDAYSMDIDCRHMTLL 1646

Query: 1174 ADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMG 1233
             D+MTFRGEVLGI RFGIQKM  S LMLASFE+T +HLF A+V+ R D ++GVSECIIMG
Sbjct: 1647 GDVMTFRGEVLGINRFGIQKMRASTLMLASFEETNEHLFEAAVHHRADPVKGVSECIIMG 1706

Query: 1234 IPMPLGTGILKIRQRDAVPPMLK--------YGAPD 1261
              + LGTG   +    +  P+          YG P+
Sbjct: 1707 KQVSLGTGSFDLLLSQSGAPLASDYGGVLSAYGLPE 1742


>gi|45935337|gb|AAS79690.1| RNA polymerase III large subunit [Ephedra viridis]
          Length = 548

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/558 (68%), Positives = 437/558 (78%), Gaps = 17/558 (3%)

Query: 368 MNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 427
           MN+HVPQTEEARTEAL LMG+QNNLCTPKNG+ILVASTQDFLTSSFLITRKDTFYDR AF
Sbjct: 1   MNLHVPQTEEARTEALSLMGIQNNLCTPKNGDILVASTQDFLTSSFLITRKDTFYDRCAF 60

Query: 428 SLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNK 487
            LMC YMGDG + +DLP+PAILKP+ELW GKQLFSVL+RP+A MRV+VN  V EK YS  
Sbjct: 61  CLMCSYMGDGSEHIDLPSPAILKPIELWIGKQLFSVLVRPNAKMRVFVNFIVMEKNYSKT 120

Query: 488 LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
                       ETMCP+DG VYFRNSELISGQLGKATLGNGNK GL+SVLLRDY A+A 
Sbjct: 121 -----------GETMCPSDGCVYFRNSELISGQLGKATLGNGNKSGLFSVLLRDYNAYAA 169

Query: 548 SGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL 607
           + CMNRLAKLSARWIGNHGFSIGIDDVQP   L+ KK + ++E Y  C+  I  YN+GKL
Sbjct: 170 ASCMNRLAKLSARWIGNHGFSIGIDDVQPGARLTAKKEERVTEGYNKCDKHIDLYNKGKL 229

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
            L+PGC+AAQTLEA IT  LN+IRE AG  C+  L WRNSPLIMSQCGSKGSPINISQM+
Sbjct: 230 NLQPGCNAAQTLEAEITGELNKIRELAGSVCLRELHWRNSPLIMSQCGSKGSPINISQMI 289

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           ACVGQQSVGGRRAPNGFIDRSLPHFPR  K+PAAKGFVANSFY+GL+ATEFFFHTMGGRE
Sbjct: 290 ACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPAAKGFVANSFYTGLTATEFFFHTMGGRE 349

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GLVDTAVKTA+TGYMSRRL+KALEDLS  YD +VR+A   IVQFLYGDD MDP +MEGK 
Sbjct: 350 GLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRSANSAIVQFLYGDDAMDPVHMEGKD 409

Query: 788 GEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKE---SCSEAFLNSLRKF 844
           GEPLN DRLL+K KATCP  G   LS  ++S+ V+++L+ Y  +    CS AF NSL  F
Sbjct: 410 GEPLNLDRLLIKTKATCPANGSPALSVSELSKRVDERLSKYDMQPEAGCSAAFRNSLFNF 469

Query: 845 FEGQQDKLDK---KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKR 901
            E     + K    +   E+   D     LE +     G T +Q+EVF++TC  RY  KR
Sbjct: 470 LEKYISNVKKTRLTLGLSEEKNNDPDLAGLENIALDICGFTARQVEVFLETCIKRYHSKR 529

Query: 902 VEAGTAIGAIGAQSIGEP 919
           +EAG A+GAIGAQSIGEP
Sbjct: 530 MEAGAAVGAIGAQSIGEP 547


>gi|214028080|gb|ACJ63309.1| RNA polymerase III large subunit [Illicium parviflorum]
          Length = 546

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/561 (69%), Positives = 438/561 (78%), Gaps = 25/561 (4%)

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +HVPQTEEARTEAL+LMGVQNNLCTPKNG+ILVASTQDFLTSSFLITRKDTFYDRA+F+L
Sbjct: 1   LHVPQTEEARTEALMLMGVQNNLCTPKNGDILVASTQDFLTSSFLITRKDTFYDRASFAL 60

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           MC YMGD  + +DLPTPAILKPVELWTGKQLFSVL+RP+ANMRV+VNL V EK YS    
Sbjct: 61  MCPYMGDATEAIDLPTPAILKPVELWTGKQLFSVLVRPNANMRVFVNLIVMEKNYSKS-- 118

Query: 490 RTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSG 549
                     ETMC NDG V FRNSELISGQ+GKATLGNGNK+GL++VLLRDY  HA + 
Sbjct: 119 ---------GETMCRNDGCVCFRNSELISGQIGKATLGNGNKNGLFTVLLRDYNTHAAAS 169

Query: 550 CMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQL 609
           CMNRLAKLSARWIGNHGFSIGIDDVQP   L+ +K + I E Y  C++ I  YN+GKL L
Sbjct: 170 CMNRLAKLSARWIGNHGFSIGIDDVQPGARLTAQKEERIREGYNKCDMHIDLYNKGKLTL 229

Query: 610 KPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVAC 669
           +PGC++AQTLEA IT  LN+IRE AG  C+  L WRNSPLIMSQCGSKGSPINISQM+AC
Sbjct: 230 QPGCNSAQTLEAEITGELNKIREIAGSVCLRELHWRNSPLIMSQCGSKGSPINISQMIAC 289

Query: 670 VGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
           VGQQSVGGRRAPNGFIDRSLPHFPR  K PAAKGFVANSFY+GL+ATEFFFHTMGGREGL
Sbjct: 290 VGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYTGLTATEFFFHTMGGREGL 349

Query: 730 VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGE 789
           VDTAVKTA+TGYMSRRL+KALEDLS  YD +VRNA G IVQ LYGDDGMDPA+MEG  G 
Sbjct: 350 VDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRNASGGIVQLLYGDDGMDPAHMEGNDGA 409

Query: 790 PLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKE---SCSEAFLNSLRKFFE 846
           PLN DRLLMK KATCP  G   LS  ++S  VE +L  +  +    CS AF  SL +FF 
Sbjct: 410 PLNMDRLLMKTKATCPRKGSCALSLVEISRKVEDRLLMHDMQLEGGCSAAFSRSLSEFF- 468

Query: 847 GQQDKLDKKIKFVE-------DIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRV 899
               K    I+          D   +  S +LE +  + SG+T +Q +VFI+TC  RY  
Sbjct: 469 ---GKCISSIRHTRSLLGLPMDANGEHGSSVLERIAAEISGLTPRQFQVFIETCIKRYHS 525

Query: 900 KRVEAGTAIGAIGAQSIGEPG 920
           KR+EAG A+GAIGAQSIGEPG
Sbjct: 526 KRMEAGAAVGAIGAQSIGEPG 546


>gi|401403150|ref|XP_003881423.1| putative DNA-directed RNA polymerase III largest subunit [Neospora
            caninum Liverpool]
 gi|325115835|emb|CBZ51390.1| putative DNA-directed RNA polymerase III largest subunit [Neospora
            caninum Liverpool]
          Length = 1769

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/805 (48%), Positives = 520/805 (64%), Gaps = 27/805 (3%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
            +R  + + + K  L K  V+ C     K  KC  CG   G++K+ V              
Sbjct: 252  IRRHQSDPIVKRLLFKRTVEACK----KVSKCFECGAPQGVLKRVV------------KP 295

Query: 61   SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNI 120
            SL +F       K  +         L+P+ V  L +R+  ++CE+L +   PEKL+++ +
Sbjct: 296  SLDQFMKIRHVVKFKEGRALTVEDDLDPLYVKNLLERIRPSECEILDIVS-PEKLLLSRL 354

Query: 121  AVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
             VPP  IRPSV +    + E+D+T  L  I + N  L   +       + L  WE LQ++
Sbjct: 355  LVPPSCIRPSVTIGEQGTTEDDLTCVLSDIAELNNVLLSHVQAGFHTNQFLGIWEFLQLQ 414

Query: 181  VAQYINSDVRGVP---FSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDP 237
              + IN+D   V     S  +++P  G  QRLKGK+GRFRGNLSGKRV+++GRTVISPDP
Sbjct: 415  CTRLINADAPAVSQLLASKNISKPGRGICQRLKGKEGRFRGNLSGKRVDFSGRTVISPDP 474

Query: 238  NLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYG 297
            N  + EV +P  +A+ LT+PERV+  NIE LR  +  G   +PGA  +   DG+   L  
Sbjct: 475  NANVYEVVVPEWVAKRLTFPERVNRVNIEVLRAAVLKGCSDWPGACYVNKADGSKCSLRY 534

Query: 298  KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCN 357
              R  +A  L+ G +V+RHL +GDVVLFNRQPSLHRMSIM HRAR+MPWRT RFNE VC+
Sbjct: 535  ANRRHVAENLQIGDVVERHLCNGDVVLFNRQPSLHRMSIMAHRARVMPWRTFRFNECVCS 594

Query: 358  PYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR 417
            PYNADFDGDEMN+H+PQT EAR EAL LMGV NNL TPKNGE L+A+TQDFL+SS+++T 
Sbjct: 595  PYNADFDGDEMNLHLPQTHEARAEALYLMGVVNNLVTPKNGEPLIAATQDFLSSSYMLTH 654

Query: 418  KDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNL 477
            KD F  R  F L+C Y  DG+ +VDLP P +LKPVELWTGKQ+  VL+RP+ N  V VN 
Sbjct: 655  KDVFLTRDQFCLICSYFTDGLSQVDLPPPTVLKPVELWTGKQVIGVLLRPNGNSFVMVNF 714

Query: 478  TVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
             +KE+ ++   I   G+       MCP+D +V FR+SEL++G +GK  LG+  K GL+  
Sbjct: 715  QLKEREFAAARI-PPGESPF----MCPSDAYVIFRHSELLAGCIGKKVLGDA-KFGLFFH 768

Query: 538  LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNV 597
            L+RD      + CM R+AKLSARW  N G +IGIDDV P   L   K  +++  Y +   
Sbjct: 769  LIRDNSPAQAAACMTRIAKLSARWFANRGMTIGIDDVTPSPTLLAAKKDILNHGYNLVAQ 828

Query: 598  KIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSK 657
            +I+ Y +G LQ  PGC   QTLE  +  IL+ +R +AGKAC   L   N PLIM   G+K
Sbjct: 829  EIQMYKKGALQPHPGCTLEQTLEVRVKSILDDLRNEAGKACNRVLHPLNKPLIMFNSGAK 888

Query: 658  GSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATE 717
            G+ INI+QM+ACVGQQ+V G+R  NGF+ R+LPHFP   ++  ++GFVANSFYSGL   E
Sbjct: 889  GALINIAQMIACVGQQNVSGQRIQNGFVSRTLPHFPLNCRDAKSRGFVANSFYSGLQPDE 948

Query: 718  FFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDG 777
            FFFHTM GREGLVDTAVKTA+TGYM RRL+KALEDLSI+YDNSVR + G IVQF+YGDDG
Sbjct: 949  FFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIRYDNSVRTSDGQIVQFVYGDDG 1008

Query: 778  MDPANMEGKSGEPLNFDRLLMKVKA 802
            ++PA ME K+ + +  D++   + +
Sbjct: 1009 LNPAMMEDKN-QSMCLDKVFQHISS 1032



 Score =  335 bits (859), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 185/368 (50%), Positives = 247/368 (67%), Gaps = 7/368 (1%)

Query: 877  KTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 936
            K   +T + +  F++  + +Y     EAG A+GA+GAQSIGEPGTQMTLKTFHFAGVASM
Sbjct: 1374 KHQWVTVRHILEFLRCSWRKYVKAISEAGEAVGAMGAQSIGEPGTQMTLKTFHFAGVASM 1433

Query: 937  NITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVM 996
            N+T GVPRIKEIIN A++I TPII   L  +++ N A +VK RIEKTLL +    IK V 
Sbjct: 1434 NVTLGVPRIKEIINAAQKIQTPIIVVPLVNDEDYNYAVMVKNRIEKTLLSECCSYIKEVY 1493

Query: 997  TSRLASIVIALDMETIQDAHLCINADIVKESIVQTP---KIKLKQQHIKVLDFRKLEIFP 1053
                A +V+ LD  TI+   L INA+ VKE+I++     K+++ +  +++++  K+ + P
Sbjct: 1494 APDGAWLVVKLDQHTIRKLFLDINANTVKEAILRQTAVNKVRITKSSVEIINEWKVRVMP 1553

Query: 1054 PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGT 1113
            P   ++I F+L +LK  L  +++ G K V+R VI  +  E+    +  +K  Y L VEG 
Sbjct: 1554 P-GGNQIFFQLQALKIGLLNIVLCGHKDVKRGVIKCEHVEQ---PDKTKKTVYGLAVEGY 1609

Query: 1114 GLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1173
            GL+ VMG +G+   +  SNH+ EV Q LGIEAAR  II EI + M A+ M ID RHM LL
Sbjct: 1610 GLRDVMGTQGVKALQATSNHVMEVAQILGIEAARAVIISEIRKCMDAYSMDIDCRHMTLL 1669

Query: 1174 ADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMG 1233
             D+MTFRGEVLGI RFGIQKM  S LMLASFE+T +HLF A+V+ R D ++GVSECIIMG
Sbjct: 1670 GDVMTFRGEVLGINRFGIQKMRASTLMLASFEETNEHLFEAAVHHRADPVKGVSECIIMG 1729

Query: 1234 IPMPLGTG 1241
              + LGTG
Sbjct: 1730 KQVSLGTG 1737


>gi|214028074|gb|ACJ63306.1| RNA polymerase III large subunit [Acorus calamus]
          Length = 544

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/554 (67%), Positives = 441/554 (79%), Gaps = 13/554 (2%)

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +HVPQTEEART+A++LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDR+AF L
Sbjct: 1   LHVPQTEEARTDAMILMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSAFCL 60

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           MC +MGDGMD +DLPTPA++KP+ELWTGKQLFSVL+RP+A MRV+VNLT+ EK+Y  +  
Sbjct: 61  MCSFMGDGMDPIDLPTPALIKPMELWTGKQLFSVLLRPYAQMRVFVNLTLMEKSYDKRQG 120

Query: 490 RTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSG 549
           R         ETMCPND FVYFRNS+L+ GQLGKATLGNGNKDGL+SVLLRDY +HA + 
Sbjct: 121 R---------ETMCPNDAFVYFRNSDLLCGQLGKATLGNGNKDGLFSVLLRDYNSHAAAS 171

Query: 550 CMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQL 609
           CMNRLAKLSARWIGNHGFSIGIDDVQP   L+ +K + I ++YE C+  I  +N+G+L L
Sbjct: 172 CMNRLAKLSARWIGNHGFSIGIDDVQPGHHLNLRKKETIEKSYEKCDNLICSFNKGELVL 231

Query: 610 KPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVAC 669
           +PGC+AAQTLE+ IT  LN+IR+D    CM  L WRNSPLI SQCGSKGSPINISQM+AC
Sbjct: 232 QPGCNAAQTLESQITGELNKIRQDTADVCMKELHWRNSPLITSQCGSKGSPINISQMIAC 291

Query: 670 VGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
           VGQQSVGGRRAP+GFIDR+LPHFP+ +K P+AKGFVANSFY+GL+ATEFFFHTM GREGL
Sbjct: 292 VGQQSVGGRRAPDGFIDRTLPHFPKSSKTPSAKGFVANSFYTGLTATEFFFHTMAGREGL 351

Query: 730 VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGE 789
           VDTAV+TA+TGYMSRRLIK+LEDLS  YD +VRN+ G IVQ LYGDDGMDPA ME   G+
Sbjct: 352 VDTAVRTAETGYMSRRLIKSLEDLSTYYDEAVRNSSGGIVQLLYGDDGMDPAKMEANEGK 411

Query: 790 PLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQ 849
           PLNF +L +KVKATCP   Q  L P +V +I E  L  + ++  S  F   L  F   Q 
Sbjct: 412 PLNFSQLFLKVKATCPARRQDLLCPSEVIKISEDILTKH-EDLISAQFKTDLLNFVSNQV 470

Query: 850 DKLDKK---IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGT 906
             L K    ++  E+   ++ S ILE+V    SGI+ KQL+VF+ TC +RY+ KRVEAG 
Sbjct: 471 TLLRKTRTLLELDENSIANEGSNILEKVAASISGISSKQLQVFLGTCLARYQSKRVEAGA 530

Query: 907 AIGAIGAQSIGEPG 920
           AIGAIGAQSIGEP 
Sbjct: 531 AIGAIGAQSIGEPA 544


>gi|195175545|ref|XP_002028504.1| GL19707 [Drosophila persimilis]
 gi|194104024|gb|EDW26067.1| GL19707 [Drosophila persimilis]
          Length = 968

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/844 (46%), Positives = 544/844 (64%), Gaps = 38/844 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
           + NP    L K  L   ++ K    A K  KCP CG  NG VKK   +L I+HD  K   
Sbjct: 127 LHNPNFSYLGKKALHAQMLAK----AKKVTKCPHCGTANGGVKKGPGLLKILHDPYKGRK 182

Query: 58  ----VTESLQEFASAITHTKESKAAV-NVATYI-LNPVNVLFLFKRMTDTDCEVLYLSER 111
                T ++ E   +    ++    + N +T   L P+ VL LF+++  +D  +L +  R
Sbjct: 183 VDAVFTSNMDEMLRSTEFNRDLNLTLSNYSTAEELTPLMVLDLFEQIPQSDVALLGMCSR 242

Query: 112 ---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              P+ LI+T + VPP  IRPSV+ +  + + E+D+T +   I+  N  +Q+ +      
Sbjct: 243 GAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKI 302

Query: 168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                 W+ LQ+ VA Y +S++ G+P +M   +   G VQRLKGKQGRFR NLSGKRV++
Sbjct: 303 ELIYEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDF 362

Query: 228 TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY 287
           +GRTVISPDPNL I +V +P+R+A+ILTYPERV+  NI  ++  ++NGP  +PGA  ++ 
Sbjct: 363 SGRTVISPDPNLMINQVGVPVRVAKILTYPERVNLANIRHMKHLVRNGPGTHPGANYVQQ 422

Query: 288 PDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
              + +  + YG  R ++A ELK G IV+RHL D D+VLFNRQPSLH+MSIMCHRA++ P
Sbjct: 423 RGSSFKKYLAYGN-REKVAQELKCGDIVERHLCDNDIVLFNRQPSLHKMSIMCHRAKVQP 481

Query: 346 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
            RT RFNE  C PYNADFDGDEMN+H+PQTEEAR EAL+LMG Q+NL TPKNGEIL+A+T
Sbjct: 482 QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAAT 541

Query: 406 QDFLTSSFLITRKDTFYDRA-AFSLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS 462
           QDF+T  +L+T+K+ F  +  A  L  C++   D    + +P PA+LKP  LWTGKQ+FS
Sbjct: 542 QDFITGGYLLTQKEVFLTKEEAMQLAACFLDNEDSTMNIQIPAPALLKPRRLWTGKQIFS 601

Query: 463 VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
           +L+RP+++  + +N+  K + Y+  +             +C ND +++ RNSEL+ G + 
Sbjct: 602 LLMRPNSDSHIRLNMVNKGRNYTKNM------------DLCINDSWIHIRNSELMCGVMD 649

Query: 523 KATLGNGNKDGLYSVLLRDYG-AHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELS 581
           KAT+G+G K  ++ +LLRD+G AHAT   M RLA++++ +I N GFS GI DV P ++L 
Sbjct: 650 KATMGSGTKQCIFYLLLRDFGEAHATKA-MWRLARITSYFIQNLGFSFGISDVTPSQKLL 708

Query: 582 DKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGS 641
             K  L+   Y  CN  I+    G LQ +PGC   +TLE+V+   L+ IRE A K C   
Sbjct: 709 HHKEILLERGYAKCNDYIEHLKSGTLQCQPGCTPKETLESVMLRELSGIREQAAKTCFAE 768

Query: 642 LPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAA 701
           L   NS LIM+  GSKGS INISQM+ACVGQQ++ G+R PNGF +R+LPHF R +  PAA
Sbjct: 769 LHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFDRHSAIPAA 828

Query: 702 KGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSV 761
           +GFV NSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+K LEDL + YD +V
Sbjct: 829 RGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTV 888

Query: 762 RNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIV 821
           RNA   +V  +YG DG+DP +ME ++ +P++       ++A  P   Q  L   ++  ++
Sbjct: 889 RNAVSEMVDTIYGGDGLDPVSMETRN-KPVDLIHQYNNLRAQIPHRVQNALPAAEIPVVL 947

Query: 822 EKQL 825
           E  L
Sbjct: 948 ESLL 951


>gi|156096092|ref|XP_001614080.1| DNA-directed RNA polymerase III largest subunit [Plasmodium vivax
           Sal-1]
 gi|148802954|gb|EDL44353.1| DNA-directed RNA polymerase III largest subunit, putative
           [Plasmodium vivax]
          Length = 1946

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/844 (47%), Positives = 528/844 (62%), Gaps = 72/844 (8%)

Query: 3   NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESL 62
           N K   +      + I KK      K  KC RCGY  G++KK +              SL
Sbjct: 168 NLKRRTVEDKFFKRHIFKKILNSCKKVTKCYRCGYPQGVIKKIIK------------PSL 215

Query: 63  QEFAS--AITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNI 120
            +F     +  TKE+   V +    LN + VL LFK M     ++L + E PEKL+IT +
Sbjct: 216 DQFMKLKHVIKTKENGKMV-IKEDDLNSLYVLNLFKNMNPYHVKLLNV-ESPEKLLITAL 273

Query: 121 AVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
            VPP  IRPSV++D   + E+D+T  L  I Q N ++  +        + L   E LQ++
Sbjct: 274 LVPPNTIRPSVVIDEHGTAEDDLTCILSEITQLNNTINNQCSNGYQTNQFLGNVEFLQLQ 333

Query: 181 VAQYINSD---VRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDP 237
           + ++INSD   V  +  +  +++P  G  QRLKGK+GRFR NLSGKRV+++ RTVISPDP
Sbjct: 334 ITRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRTVISPDP 393

Query: 238 NLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA--------------- 282
           N+ I EV +P  +A  LTYPE+V+ +N+ KL++ I+NG   +PGA               
Sbjct: 394 NISIDEVVVPESIAMRLTYPEKVNRYNMAKLKRLIRNGTSTWPGANYVIKKACGQGGASP 453

Query: 283 ----------RMIRYPDGT-----ARV------------LYGKFRNQ-LAVE-LKSGCIV 313
                     R + +P G      A V            +  K+ N+ L VE L+ G +V
Sbjct: 454 RGDSLIDVVKRYVGHPSGVLLPTAASVGDPRRGNPAINKISLKYANKRLVVENLQVGDVV 513

Query: 314 DRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVP 373
           +RHL DGD+VLFNRQPSLHRMSIMCH+AR+M ++T RFNE VC+PYNADFDGDEMN+HVP
Sbjct: 514 ERHLVDGDIVLFNRQPSLHRMSIMCHKARVMKYKTFRFNECVCSPYNADFDGDEMNLHVP 573

Query: 374 QTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCY 433
           QTEEAR EAL LM V+NNL TPKNGE+++A TQDFL++S++IT KDTF DR +F L+C Y
Sbjct: 574 QTEEARAEALYLMNVKNNLITPKNGEVIIALTQDFLSASYVITNKDTFLDRDSFCLLCSY 633

Query: 434 MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
             D    +DLP PAILKP ELWTGKQL SVLI+P+      +N  +KE+ YS K     G
Sbjct: 634 FSDAKVNIDLPVPAILKPKELWTGKQLISVLIKPNTKENTIINFEIKEREYSTK----NG 689

Query: 494 DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
           D    ++ MC ND +V F  SELI G LGK  LG+ +K GL+  L+    ++     MNR
Sbjct: 690 D----LKHMCLNDSYVCFYKSELICGSLGKKVLGS-SKYGLFYYLIHHNSSYVALKIMNR 744

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
            +KL++R+  N G +IGIDDV P   L  KK  L+   YE  N +I  YNE K+Q++PGC
Sbjct: 745 FSKLTSRYFSNKGMTIGIDDVTPSDTLLQKKKDLLQAGYEKVNREIALYNEKKMQIQPGC 804

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              +TLE  + +IL+ +R DAGK C   L   N PLIM   G+KG+ INI+QM+ACVGQQ
Sbjct: 805 TLEETLEIKVKNILDDLRNDAGKTCNQYLDHLNKPLIMFNSGAKGALINIAQMIACVGQQ 864

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
           +V G+R  NGFI+R+LPHF    K+  ++GFV NSFY+GL+ TEFFFHTM GREGLVDTA
Sbjct: 865 NVTGQRIQNGFINRTLPHFNFHCKDSESRGFVQNSFYTGLNPTEFFFHTMSGREGLVDTA 924

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
           VKTA+TGYM RRL+KALEDLSI YD SVR+    IVQF+YGDD ++P+ ++  +     F
Sbjct: 925 VKTAETGYMQRRLMKALEDLSIHYDFSVRSCDKQIVQFIYGDDALNPSFVDNNNSYAHQF 984

Query: 794 DRLL 797
           D++ 
Sbjct: 985 DKIF 988



 Score =  150 bits (379), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 73/140 (52%), Positives = 97/140 (69%)

Query: 1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
            Y +LVEG  L  V+G EG+D     SNH+  V Q LGIEAAR+ II+EI + ++A+ + I
Sbjct: 1783 YSILVEGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARVTIINEIKKCVEAYSIDI 1842

Query: 1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
            D RH+MLLAD+M F G++LGI RFGIQK   S LMLASFE+T +HLF +S     D I  
Sbjct: 1843 DIRHIMLLADIMAFTGDILGINRFGIQKARHSTLMLASFEETNEHLFVSSFFKNRDEINN 1902

Query: 1226 VSECIIMGIPMPLGTGILKI 1245
            +SE II+G  +P+GTG  ++
Sbjct: 1903 ISESIIVGKNIPIGTGAFQL 1922



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 131/213 (61%), Gaps = 4/213 (1%)

Query: 884  KQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVP 943
            KQL +FI    S+Y       G A+G+I AQSIGEPGTQMTLKTFHFAGVASMN+T GVP
Sbjct: 1430 KQLYLFIFFNVSKYFKYISAPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLGVP 1489

Query: 944  RIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASI 1003
            RIKEIIN +  I TPI+   L+  D+ N A ++K ++EKT +  +   IK   T+R   +
Sbjct: 1490 RIKEIINASSTIQTPILNIPLQVKDSYNFALMMKSKLEKTTVRDICLYIKEDYTARGIFL 1549

Query: 1004 VIALDMETIQDAHLCINADIVKESIV---QTPKIKLKQQHIKVLDFRKLEIFPPVDKSKI 1060
             +  + + I +  L INA  +++ I+      KIK+ +  ++V+D  KL +    D+  +
Sbjct: 1550 SVKFNEQLIHNLFLNINAYTIRDIIMRQSHISKIKINKILVEVVDAYKLHMSLKNDEF-L 1608

Query: 1061 HFELYSLKNVLPMVIVKGIKTVERVVIAEKEKE 1093
             F++ +LK  L  +++ G K ++R +I ++E E
Sbjct: 1609 FFQMEALKKGLLDLLIHGDKDIKRCIIKKEEVE 1641


>gi|399949784|gb|AFP65441.1| RNA polymerase III largest subunit [Chroomonas mesostigmatica
            CCMP1168]
          Length = 1328

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/1274 (35%), Positives = 694/1274 (54%), Gaps = 124/1274 (9%)

Query: 11   KTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAIT 70
            + + +  ++KKC      +  CP C   NG +KK+      IH     T  ++E    + 
Sbjct: 136  RIEYITDLLKKCKN----SDLCPYCLSRNGRIKKS-GNYEFIH-----TIEIEEDGIPLF 185

Query: 71   HTKESKAAVNVATYI-LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIA 126
            H K+++  +     I LNP+N+  LF+++   D E+L + E   RPE L+   I VPP+ 
Sbjct: 186  HEKKTEKVLTAFEEIELNPLNIFLLFQKIKFEDLEILDIDEIETRPENLLTCFIPVPPLI 245

Query: 127  IRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYIN 186
            +RPS+I+    SNE+D+T +L  I   N  L++ L +  S F+    W+ LQVE  +Y+N
Sbjct: 246  VRPSIILKEKMSNEDDLTTKLSDIYIINTFLKKNLEKEVSFFQMKNNWDILQVECVKYLN 305

Query: 187  SDVRGVPFSMQV-ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVA 245
            S+     FS++  +RP     +RLKGK GRFRGNL GKRV+++GRT+ISPDPNL +  + 
Sbjct: 306  SET----FSLEKNSRPFKSLFKRLKGKNGRFRGNLGGKRVDFSGRTIISPDPNLPLNILG 361

Query: 246  IPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAV 305
             P R+A  LT+PE+V+ +NIE+L++ +     K+ GA          + +    +    +
Sbjct: 362  FPSRLATKLTFPEKVTKYNIERLQRNLIRRSSKFSGAIFFMDEKKQKKAINISPKENDFL 421

Query: 306  ELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDG 365
             LK G +++RHL++ D+VLFNRQPSLHR+SIM HR +++P +T +FNE +C PYNADFDG
Sbjct: 422  NLKEGFLIERHLKNNDIVLFNRQPSLHRISIMAHRIKLIPGKTFKFNECICKPYNADFDG 481

Query: 366  DEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRA 425
            DEMN+HVPQT++AR EA+ L+ +  NL +P NGE  V++TQDFL++SFLIT KD F+  +
Sbjct: 482  DEMNIHVPQTQKARAEAISLLNIITNLNSPANGESQVSATQDFLSASFLITSKDQFFSES 541

Query: 426  AFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVL----------IRPHANMRVYV 475
                +   +     +     P+ILKP +LWTGKQ+FS++          IR   N+   +
Sbjct: 542  EIGEVFSILKLEEFKHKKTEPSILKPHKLWTGKQIFSLVISRKIERSLKIRRRKNISCDI 601

Query: 476  NLTVK---EKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKD 532
            N  +    EK YS        +++    ++CP DG+++F+N EL++GQ+GK T+G+GNK+
Sbjct: 602  NNLIYQKMEKLYS-------LNKKHCSSSLCPFDGWIFFKNGELLAGQVGKLTIGSGNKN 654

Query: 533  GLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENY 592
             L +        +  + C+ +++KL++ W+ + GFS    ++ P      +K  LI  +Y
Sbjct: 655  SLLNFFSNLDSFNFLTKCLLKISKLTSGWLSDFGFSFSFKEILPTFGQQIQKKLLIYNSY 714

Query: 593  EVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW-RNSPLIM 651
             +C   IK     K          +  E+ +  I   +R+D G  C+    + +NS LIM
Sbjct: 715  NICE-SIKNQTSFK--------KKKNFESFVQMIFGNLRKDLGVCCIDLYNFNKNSGLIM 765

Query: 652  SQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF--PRKAKEPAAKGFVANSF 709
               GSKGS IN+SQ+++C+GQQS+ G R   GFI R LPH         P  KGF+ NSF
Sbjct: 766  VASGSKGSIINLSQIISCLGQQSILGSRISKGFIRRILPHLNIENSLSTPRFKGFIENSF 825

Query: 710  YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIV 769
            Y GL   +FFFH+M GREGLVDTA+KTA++GY+ RR+IK LED+ + YD S R + G IV
Sbjct: 826  YEGLDGIDFFFHSMAGREGLVDTAIKTAESGYLQRRMIKTLEDIIVFYDLSTRTSDGRIV 885

Query: 770  QFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG 829
            Q  + +D  +  N                             LS    S     Q   + 
Sbjct: 886  QLTFSEDCSESNN-----------------------------LSLLYASACFTNQKLVFF 916

Query: 830  KESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTS-----GITEK 884
            K+S + +F     +FFE        KI F+  I + +   I   + ++        I++ 
Sbjct: 917  KKSKNNSF-----EFFE--------KISFLRSISFINMDSIPFFIKNRDFFFYFLHISDI 963

Query: 885  QLEVFIQT------CFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNI 938
            +   F+ T        +  +  ++E GT +GAI AQS+GEP TQMTL+TFHF G+A MNI
Sbjct: 964  KNFFFLYTEQHCLKILNTSKTCKIEPGTCVGAISAQSLGEPATQMTLQTFHFTGIADMNI 1023

Query: 939  TQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            T GVPR+ EI+N +K+I+  +I         +      K +IEK  LG + + + + +  
Sbjct: 1024 TLGVPRLNEIMNASKKIAVSLIKFNFFSMGKKLNFYKFKIQIEKIYLGDICEKLNLKIEP 1083

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP----- 1053
            +   I I L  +  ++ +L I    + + I +      K +         ++IFP     
Sbjct: 1084 KEIFIEIFLKGKNFRNFNLNIRFKAIIKKIKEIGTFWKKSRFFYNPFCNFIQIFPLKKCK 1143

Query: 1054 --PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVE 1111
               V     HF +   +  LP +++ G   VE +     E +K  +  +       +L++
Sbjct: 1144 DNSVSDETSHF-VNRCRKDLPSILIFGFVNVENI-----EIDKNFLHSS-------ILLK 1190

Query: 1112 GTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMM 1171
             +    ++  + +D       HI  + +T GIEAAR  II EI      + +SI+KR+++
Sbjct: 1191 NSKFWKILELDSVDKSTIYCTHILTIFETFGIEAARESIILEIKTIFDLYKISINKRYLV 1250

Query: 1172 LLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECII 1231
            LLAD+MTF GE+LG TR+G+ KM K+ L+LASFEKT ++LF+AS+    D I  VSE II
Sbjct: 1251 LLADVMTFYGEILGATRYGLAKMKKNFLVLASFEKTIENLFSASIKISKDEILSVSESII 1310

Query: 1232 MGIPMPLGTGILKI 1245
            +G     GTGI+ +
Sbjct: 1311 LGKNPSNGTGIVSL 1324


>gi|389585038|dbj|GAB67769.1| DNA-directed RNA polymerase III largest subunit [Plasmodium cynomolgi
            strain B]
          Length = 1969

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/804 (48%), Positives = 517/804 (64%), Gaps = 57/804 (7%)

Query: 28   KAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFAS--AITHTKESKAAVNVATYI 85
            K  KC RCGY  G++KK +              SL +F     +  TKE+   V +    
Sbjct: 233  KVTKCYRCGYPQGVIKKIIK------------PSLDQFMKLKHVIKTKENGKMV-IKEDD 279

Query: 86   LNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITE 145
            LN + VL LFK M     ++L + E PEKL+IT + VPP  IRPSVI+D   + E+D+T 
Sbjct: 280  LNSLYVLNLFKNMNPYHIKLLNV-ENPEKLLITALLVPPNTIRPSVIIDEHGTAEDDLTC 338

Query: 146  RLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSD---VRGVPFSMQVARPL 202
             L  I Q N ++  +        + L   E LQ++  ++INSD   V  +  +  +++P 
Sbjct: 339  ILSEITQLNNTINNQCSNGYQTNQFLGNVEFLQLQTTRFINSDSPAVSQLLATQNISKPG 398

Query: 203  SGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSD 262
             G  QRLKGK+GRFR NLSGKRV+++ RTVISPDPN+ I EV IP  +A  LTYPE+V+ 
Sbjct: 399  RGICQRLKGKEGRFRCNLSGKRVDFSSRTVISPDPNISIDEVVIPEIIAMRLTYPEKVNR 458

Query: 263  HNIEKLRQCIQNGPDKYPGARMI--RYPDGTARVLYGKFRNQ------------------ 302
            +NIEKL++ I+NG + +PGA  I  +  +G +    G F +Q                  
Sbjct: 459  YNIEKLKKLIKNGTNTWPGANYIIKKGCNGRSCSRGGGFSSQGDSIIDVVKRGNPAINKI 518

Query: 303  --------LAVE-LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNE 353
                      +E L+ G IV+RHL +GD+VLFNRQPSLHRMSIMCH+AR+M ++T RFNE
Sbjct: 519  SLKYANKKFVIENLQVGDIVERHLVNGDIVLFNRQPSLHRMSIMCHKARVMKYKTFRFNE 578

Query: 354  SVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSF 413
             VC+PYNADFDGDEMN+HVPQTEEAR EAL LM V++NL TPKNGE+++A TQDFL++S+
Sbjct: 579  CVCSPYNADFDGDEMNLHVPQTEEARAEALYLMNVKHNLITPKNGEVMIALTQDFLSASY 638

Query: 414  LITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRV 473
            +IT KDTF DR +F L+C Y  D    ++LP PAILKP ELWTGKQL SVLI+P+     
Sbjct: 639  VITNKDTFLDRDSFCLLCSYFSDAKVDIELPVPAILKPKELWTGKQLISVLIKPNRKENT 698

Query: 474  YVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDG 533
             +N  +KE+ YS K     GD    ++ MC ND +V F  SELI G LGK  LG+  K G
Sbjct: 699  IINFELKEREYSTK----NGD----LKHMCLNDSYVCFYKSELICGSLGKKVLGSS-KYG 749

Query: 534  LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYE 593
            L+  L+    ++     MNR +KL++R+  N G +IGIDDV P   L  KK  L+   YE
Sbjct: 750  LFYYLIHHNSSYVALKIMNRFSKLTSRYFTNKGMTIGIDDVTPSDTLIQKKKDLLQAGYE 809

Query: 594  VCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQ 653
              N +I  YNE K+Q++PGC   +TLE  + +IL+ +R DAGK C   L   N PLIM  
Sbjct: 810  KVNKEILLYNEKKMQIQPGCTLEETLEIKVKNILDDLRNDAGKTCNQYLDHLNKPLIMFN 869

Query: 654  CGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGL 713
             G+KG+ INI+QM+ACVGQQ+V G+R  NGFI+R+LPHF    K+  ++GFV NSFY+GL
Sbjct: 870  SGAKGALINIAQMIACVGQQNVTGQRIQNGFINRTLPHFNIHCKDSESRGFVQNSFYTGL 929

Query: 714  SATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLY 773
            + TEFFFHTM GREGLVDTAVKTA+TGYM RRL+KALEDLSI YD SVR+    IVQF+Y
Sbjct: 930  NPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSCDKQIVQFIY 989

Query: 774  GDDGMDPANMEGKSGEPLNFDRLL 797
            GDD ++P+ ++  +     FD++ 
Sbjct: 990  GDDALNPSYVDNNNSYAHQFDKIF 1013



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/223 (41%), Positives = 130/223 (58%), Gaps = 18/223 (8%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            I  KQL +FI    S+Y       G A+G+I AQSIGEPGTQMTLKTFHFAGVASMN+T 
Sbjct: 1463 INLKQLYLFIFFNVSKYFKYISAPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTL 1522

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRL 1000
            GVPRIKEIIN +  I TPI+   L+  DN N A ++K ++EKT +  +   IK   TSR 
Sbjct: 1523 GVPRIKEIINASSTIQTPILNIPLQVKDNYNFALMMKSKLEKTTIRDICLYIKEDYTSRG 1582

Query: 1001 ASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKI 1060
              + +  + E I +  L INA  +KE I       ++Q HI  +   K+ +   V++ K+
Sbjct: 1583 IFLSVKFNEELIHNLFLNINAYSIKEII-------MRQSHINKIKINKVVV-EVVNEYKL 1634

Query: 1061 H----------FELYSLKNVLPMVIVKGIKTVERVVIAEKEKE 1093
            H          F++ SLK  L  +++ G K ++R +I ++E E
Sbjct: 1635 HMSLKNGEFLFFQMESLKKGLLDLLIHGDKDIKRCIIKKEEVE 1677



 Score =  144 bits (362), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 70/137 (51%), Positives = 94/137 (68%)

Query: 1109 LVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKR 1168
            L +G  L  V+G EG+D     SNH+  V Q LGIEAAR+ II+EI + ++A+ + ID R
Sbjct: 1809 LEKGNALNYVLGLEGVDFKHIISNHVINVFQVLGIEAARVTIINEIKKCIEAYSIDIDIR 1868

Query: 1169 HMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSE 1228
            H+MLLAD+M F G++LGI RFGIQK   S LMLASFE+T +HLF +S     D I  +SE
Sbjct: 1869 HIMLLADIMAFTGDILGINRFGIQKARHSTLMLASFEETNEHLFVSSFFKNRDEINNISE 1928

Query: 1229 CIIMGIPMPLGTGILKI 1245
             II+G  +P+GTG  ++
Sbjct: 1929 SIIVGKNIPIGTGAFQL 1945


>gi|45935355|gb|AAS79699.1| RNA polymerase III large subunit [Nymphaea lotus]
          Length = 545

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/558 (65%), Positives = 425/558 (76%), Gaps = 18/558 (3%)

Query: 368 MNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 427
           MN+H+PQTEEAR EAL+LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF
Sbjct: 1   MNLHIPQTEEARAEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 60

Query: 428 SLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNK 487
           SLMC YMGDGMD +DLPTPA+LKP+ELWTGKQLFSVLIRPHA+MR+YVNL +KEK    K
Sbjct: 61  SLMCSYMGDGMDPIDLPTPALLKPIELWTGKQLFSVLIRPHASMRIYVNLFLKEK----K 116

Query: 488 LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
            ++  G       TMCPNDGFVY RNSEL+ GQ+GKATLGNGNK GL+SVL+RDY AHA 
Sbjct: 117 CVKNRG-------TMCPNDGFVYIRNSELLCGQVGKATLGNGNKSGLFSVLIRDYNAHAA 169

Query: 548 SGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL 607
           + CMNRLAKLSARWIGNHGF+IGIDDVQP+  L+ K  ++I      CN  I  YN+G L
Sbjct: 170 ASCMNRLAKLSARWIGNHGFTIGIDDVQPEARLAKKNSRVIQRAQNQCNSYIDSYNKGVL 229

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
           Q +PG  AA+TLEA+IT  L+ IRE  G+ C   LPWRNSPLIMSQCGSKGS INI QM+
Sbjct: 230 QPQPGSTAAETLEAMITSELSGIREKVGEVCTKLLPWRNSPLIMSQCGSKGSLINICQMI 289

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
            CVGQQSVGGRRAPNGF++RSLPHF R  K PAAKGFV NSFY+GL+ATEFFFHTMGGRE
Sbjct: 290 GCVGQQSVGGRRAPNGFMERSLPHFLRNDKSPAAKGFVTNSFYTGLTATEFFFHTMGGRE 349

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GLVDTAVKTADTGYMSRRL+K+LEDLSI YD +VRNA G IVQ  YG+DGMDP+ MEG  
Sbjct: 350 GLVDTAVKTADTGYMSRRLMKSLEDLSIHYDQTVRNASGVIVQLQYGEDGMDPSKMEGDD 409

Query: 788 GEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG---KESCSEAFLNSLRKF 844
           G+PLN + L +K +A CP   Q  LS  ++  IV+ +L+      ++  S +F   L  F
Sbjct: 410 GQPLNLEHLFVKTQAVCPLNSQECLSHDEILRIVDDRLSKADLMPEDGSSSSFKYMLTSF 469

Query: 845 FEGQQDKLDK--KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRV 902
            + Q    +    ++  ED   D K  +L  V    +GI+ +QL+ F++T   RY  K V
Sbjct: 470 IKKQLSAWNMPFNVRKKEDNYKDQKDVLL--VAGNKAGISSQQLKYFLETSLHRYCSKTV 527

Query: 903 EAGTAIGAIGAQSIGEPG 920
           E  +A+GAIGA SIGEPG
Sbjct: 528 EGASAVGAIGAHSIGEPG 545


>gi|341888769|gb|EGT44704.1| hypothetical protein CAEBREN_28388 [Caenorhabditis brenneri]
          Length = 1024

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/816 (48%), Positives = 528/816 (64%), Gaps = 34/816 (4%)

Query: 3   NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA-VLGIIHDRSKVTES 61
           NP ++ L +  L K IV  C     K   C +CG  NG VKKAV  VL I        + 
Sbjct: 132 NPNIDYLHRKALHKRIVAACK----KGSTCQQCGMKNGTVKKAVGTVLKIAFASPVPADE 187

Query: 62  LQEFASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYL----SERPEKLI 116
           L ++A+  T  +E    V    + +LNP+ V  LF  + + D  VL +     + P  L+
Sbjct: 188 LGKYATMFTVNQEVGEHVRKMKFTLLNPLFVQKLFANIKEADIPVLMVRSGEEKHPNDLL 247

Query: 117 ITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWE 175
           +T + VPP+ IRPSV+ +  S + E+D+T +L  I+ TN  L++   +   +      WE
Sbjct: 248 LTRMPVPPVCIRPSVVSEVKSGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWE 307

Query: 176 TLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISP 235
            LQ++ A YINS++ G+P  MQ  + +  F QRLKGKQGRFRGNL GKRV+++GRTVISP
Sbjct: 308 HLQIQCALYINSEMSGLPADMQPKKAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISP 367

Query: 236 DPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARV 294
           DPNL+I +V +PI +A  LT+PE V+  NIEK+RQ + NG D +PGA  ++    G  ++
Sbjct: 368 DPNLRIDQVGVPIHVAMTLTFPEIVNKSNIEKMRQLVINGSDIHPGANYLVDKKTGNKKL 427

Query: 295 L-YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNE 353
           L YGK R +LA  L+ G  V+RHL+D DVVLFNRQPSLH++SIM HRA++MP RT RFNE
Sbjct: 428 LKYGK-REELAKNLRYGDTVERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNE 486

Query: 354 SVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSF 413
             C PYNADFDGDEMN+H+PQT EA+ EA  LM V+NNL TP++GE LVA+ QDF+T  +
Sbjct: 487 CACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGY 546

Query: 414 LITRKDTFYDRAAFSLMCCYMGDG----MDRVDLPTPAILKPVELWTGKQLFSVLIRPHA 469
           L+T KDTF  RA        + D       ++ +P PAIL+PVELWTGKQL  ++IRP  
Sbjct: 547 LLTHKDTFLPRAEVYRFAAALIDASAKKQTKIRIPPPAILRPVELWTGKQLIELIIRPDK 606

Query: 470 NMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNG 529
             +V +NLT K K+YS  L              C  D +V  RNS L++G L K+ LG+ 
Sbjct: 607 GSQVSLNLTTKNKSYSGNL------------EFCNKDSYVIIRNSVLLAGCLDKSLLGSS 654

Query: 530 NKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLIS 589
           +K  ++ +L+RDYG  A    M RLA+++  ++ N GFSIGI DV+P ++L  +KG+L+ 
Sbjct: 655 SKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEKLLQEKGQLVD 714

Query: 590 ENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPL 649
           + YE C   IKE  EGKL+ +PGC   +TLEA+I   L+ IR+ AG+ C+ +L   N+PL
Sbjct: 715 KGYEQCAQFIKELEEGKLKAQPGCTEEETLEAIILRELSTIRDHAGQVCLRNLSKYNAPL 774

Query: 650 IMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSF 709
            M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF RK K P AKGFVANSF
Sbjct: 775 TMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSF 834

Query: 710 YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALE---DLSIQYDNSVRNAGG 766
           YSGL+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+K LE    L   Y   +     
Sbjct: 835 YSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEVIQLLIYIYIIKLFRISV 894

Query: 767 CIVQFLYG-DDGMDPANMEGKSGEPLNFDRLLMKVK 801
            ++  L+G  DG+DP+ ME K G  ++F  +L+  K
Sbjct: 895 LLMMELFGLPDGLDPSMMEAKDGSVVDFAHVLVHAK 930


>gi|149015767|gb|EDL75115.1| similar to polymerase (RNA) III (DNA directed) (155kD) [Rattus
            norvegicus]
          Length = 745

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/741 (52%), Positives = 517/741 (69%), Gaps = 17/741 (2%)

Query: 517  ISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQP 576
            + G + K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P
Sbjct: 1    MCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTP 60

Query: 577  KKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGK 636
             + L   K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG 
Sbjct: 61   GQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGS 120

Query: 637  ACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKA 696
            AC+  L   NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +
Sbjct: 121  ACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHS 180

Query: 697  KEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQ 756
            K PAAKGFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL  Q
Sbjct: 181  KLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQ 240

Query: 757  YDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQ 816
            YD +VR++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +KA  P   +R LS  +
Sbjct: 241  YDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVYPCQSERALSKNE 299

Query: 817  VSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTH 876
            ++   E  +       C ++FL  ++ F +G  +K+ K     +  G +D       V +
Sbjct: 300  LTLTTEAIMKKNEFLCCQDSFLQEIKTFIKGVSEKIKKT---RDKYGINDNGTTEPRVLY 356

Query: 877  KTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 936
            +   IT  Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASM
Sbjct: 357  QLDRITRTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 416

Query: 937  NITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVM 996
            NIT GVPRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V 
Sbjct: 417  NITLGVPRIKEIINASKAISTPIITAQLDMDDDADYARLVKGRIEKTLLGEISEYIEEVF 476

Query: 997  TSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD 1056
                  I++ L +E I+   L +NA+ V+ SI  T K+++K   + V     + + P  +
Sbjct: 477  LPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPREN 535

Query: 1057 -KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGL 1115
             KS +++ L  LK  LP V+V+GI  V R VI         + E   K+K++LLVEG  L
Sbjct: 536  SKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKFKLLVEGDNL 587

Query: 1116 QAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLAD 1175
            +AVM   G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  HGMSID+RH+MLL+D
Sbjct: 588  RAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSD 647

Query: 1176 LMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIP 1235
            LMT++GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSECIIMGIP
Sbjct: 648  LMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIP 707

Query: 1236 MPLGTGILKIRQ---RDAVPP 1253
            M +GTG+ K+     RD  PP
Sbjct: 708  MNIGTGLFKLLHKANRDPKPP 728


>gi|82794246|ref|XP_728359.1| RNA polymerase A/beta'/A'' subunit [Plasmodium yoelii yoelii 17XNL]
 gi|23484677|gb|EAA19924.1| RNA polymerase A/beta'/A'' subunit, putative [Plasmodium yoelii
           yoelii]
          Length = 2020

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/866 (45%), Positives = 528/866 (60%), Gaps = 83/866 (9%)

Query: 7   EALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFA 66
           ++L K    K I+  C     K  KC  CG   G++KK +              SL +F 
Sbjct: 154 DSLFKRQFFKRILSICK----KVNKCYNCGSPQGVIKKIIK------------PSLDQFM 197

Query: 67  S--AITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPP 124
               I   KE+   V +    LN + VL LFK +     ++L + E PEKLIIT + VPP
Sbjct: 198 KLKHIVKVKENGKQV-IKEEDLNSLYVLKLFKNINPFYIKLLNI-ENPEKLIITTLIVPP 255

Query: 125 IAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQY 184
             IRPSVI+D   + E+D+T  L  I Q N ++  +        + L   E LQ++V ++
Sbjct: 256 NTIRPSVIIDEHGTAEDDLTCILSEIAQLNNTINSQSSNGYQTNQFLGNIEFLQLQVTRF 315

Query: 185 INSD---VRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKI 241
           INSD   V  +  +  +++P  G  QRLKGK+GRFR NLSGKRV+++ RTVISPDPN+ I
Sbjct: 316 INSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRTVISPDPNISI 375

Query: 242 TEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI---------------- 285
            EV IP  +A  LTYPE V+ +NIEKL+  I+NG + +PGA  +                
Sbjct: 376 DEVVIPKIIAMRLTYPETVNKYNIEKLKMLIRNGSNVWPGANYVIKKNVNMNYDENGKIG 435

Query: 286 --------RYPDGT-------------------------ARVLYGKFRNQLAV--ELKSG 310
                   RY + +                         A  +  K+ N+  V  +LK G
Sbjct: 436 NSIIDIVKRYVNKSRELNTSFSKNINNEQNQNSSNNNLGANRISLKYANKKYVIDQLKIG 495

Query: 311 CIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNM 370
            IV+RH+ DGD+VLFNRQPSLHRMSIMCH+AR+M ++T RFNE VC+PYNADFDGDEMN+
Sbjct: 496 DIVERHICDGDIVLFNRQPSLHRMSIMCHKARVMDYKTFRFNECVCSPYNADFDGDEMNL 555

Query: 371 HVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLM 430
           HVPQTEE+R EAL LM V++NL TPKNGE+++A TQDFL++S++IT KDTF DR  F L 
Sbjct: 556 HVPQTEESRAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYVITNKDTFLDRDLFCLX 615

Query: 431 CCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIR 490
           C Y  D    ++LP PAILKP ELWTGKQL SVLI+P+ N    +N  +KE+ YS K   
Sbjct: 616 CSYFSDAKIDIELPVPAILKPKELWTGKQLISVLIKPNKNENTIINFEMKEREYSTK--- 672

Query: 491 TEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGC 550
             GD    ++ +  +D +V F  SELI G LGK  LG  +K GL+  L+ +         
Sbjct: 673 -NGD----LKYLSRDDSYVCFYKSELICGSLGKKVLG-ASKYGLFYYLIHNNSTQIALQI 726

Query: 551 MNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLK 610
           MNR +KLS+R+  N G +IGIDDV P + L+DKK  L+   YE  N +I  YNE K+Q++
Sbjct: 727 MNRFSKLSSRYFSNKGMTIGIDDVTPSRVLTDKKRDLLLNGYEKVNKEIILYNEKKMQIQ 786

Query: 611 PGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACV 670
           PGC   +TLE  +  IL+ +R DAGK C   LP+ N PLIM   G+KG+ INI+QM+ACV
Sbjct: 787 PGCTLEETLEIKVKSILDDLRNDAGKTCNQYLPYLNKPLIMFNSGAKGALINIAQMIACV 846

Query: 671 GQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLV 730
           GQQ+V G+R  NGFI+R+LPHF    K   ++GFV NSFY+GL+ TEFFFHTM GREGLV
Sbjct: 847 GQQNVSGQRIQNGFINRTLPHFNFHCKGSESRGFVQNSFYTGLNPTEFFFHTMSGREGLV 906

Query: 731 DTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEP 790
           DTAVKTA+TGYM RRL+KALEDLSI YD SVR+    I+QF+YGDD ++P+ ++      
Sbjct: 907 DTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSCDKQIIQFIYGDDALNPSYIDSNHTYM 966

Query: 791 LNFDRLLMKVKATCPPAGQRYLSPQQ 816
             FD++   + +  P        P++
Sbjct: 967 DQFDKIYNHIISISPSHTLFLYKPRK 992



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/262 (40%), Positives = 155/262 (59%), Gaps = 9/262 (3%)

Query: 840  SLRKFFEGQQD-KLDKKIKFVEDIGWDDKSQILE----EVTHKTSGITEKQLEVFIQTCF 894
            ++ KFF+ ++  +L KK  +   +  +DKS + +     + +  S I  KQL +FI    
Sbjct: 1406 NIYKFFKYKKGVELIKKNDYYNFVKINDKSNLYDPSYRSMIYDYSFINLKQLYIFIYFNI 1465

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S+Y       G A+G+I AQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +  
Sbjct: 1466 SKYFKYISSPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASSI 1525

Query: 955  ISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQD 1014
            I TPI+   L   DN N A ++K ++EKT +  + + IK    S+   I I  + + IQ 
Sbjct: 1526 IQTPILNIPLRIKDNYNFALMMKSKLEKTSIRDICEYIKENYCSKGIYISIKFNEDLIQK 1585

Query: 1015 AHLCINADIVKESIVQ---TPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVL 1071
              L INA  +++ I++     KIK+ + +I V++  KL I    D+  I F++ SLK  L
Sbjct: 1586 LFLNINAYTIRDIILKQTHISKIKINKIYIDVINDYKLHISIKNDEF-IFFQIESLKKGL 1644

Query: 1072 PMVIVKGIKTVERVVIAEKEKE 1093
              ++V G K ++R +I ++E E
Sbjct: 1645 LDLLVYGDKDIKRCIIKKEEIE 1666



 Score =  139 bits (351), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 98/167 (58%), Gaps = 30/167 (17%)

Query: 1105 KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEV--------------------------- 1137
            +Y +LVEG  L  ++G EG+D     SNH+  V                           
Sbjct: 1824 QYSILVEGNALNYILGLEGVDFKHIISNHVINVFQVCSRKNTKNILIIQFYLHCYTYLFF 1883

Query: 1138 ---QQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKM 1194
                Q LGIEAAR+ II+EI + ++A+ + ID RH+MLLAD+M F GE+LGI RFGIQK 
Sbjct: 1884 HIFAQVLGIEAARVTIINEIKKCIEAYSIDIDIRHIMLLADIMAFTGEILGINRFGIQKA 1943

Query: 1195 DKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             +S LMLASFE+T +HLF +S    +D I  +SE II+G  +P+GTG
Sbjct: 1944 RQSTLMLASFEETNEHLFVSSFFKNNDEINNISESIIVGKNIPIGTG 1990


>gi|68070079|ref|XP_676951.1| DNA-directed RNA polymerase 3 largest subunit [Plasmodium berghei
           strain ANKA]
 gi|56496875|emb|CAI00330.1| DNA-directed RNA polymerase 3 largest subunit, putative [Plasmodium
           berghei]
          Length = 1490

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/863 (46%), Positives = 530/863 (61%), Gaps = 78/863 (9%)

Query: 7   EALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFA 66
           ++L K    K I+  C     K  KC  CG   G++KK +              SL +F 
Sbjct: 154 DSLFKRQFFKRILSICK----KVNKCYNCGSPQGVIKKIIK------------PSLDQFM 197

Query: 67  S--AITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPP 124
               I   KE+   V +    LN + VL LFK +     ++L + E PEKLIIT + VPP
Sbjct: 198 KLKHIVKVKENGKQV-IKEEDLNSLYVLKLFKNINPFYIKLLNI-ENPEKLIITTLIVPP 255

Query: 125 IAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQY 184
             IRPSVI+D   + E+D+T  L  I Q N ++  +        + L   E LQ++V ++
Sbjct: 256 NTIRPSVIIDEHGTAEDDLTCILSEIAQLNNTINNQSYNGYQTNQFL-NIEFLQLQVTRF 314

Query: 185 INSD---VRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKI 241
           INSD   V  +  +  +++P  G  QRLKGK+GRFR NLSGKRV+++ RTVISPDPN+ I
Sbjct: 315 INSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRTVISPDPNISI 374

Query: 242 TEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI---------------- 285
            EV IP  +A  LTYPE V+ +NIEKL+  I+NG + +PGA  I                
Sbjct: 375 DEVVIPKIIAMRLTYPETVNKYNIEKLKMLIRNGSNVWPGANYIIKKNVSMNCDENGKVG 434

Query: 286 --------RYPDGT-------------------ARVLYGKFRNQLAV--ELKSGCIVDRH 316
                   RY + +                   A  +  K+ N+  V   LK G IV+RH
Sbjct: 435 NSIIDIVKRYVNKSTELNINHEQNQNSSNNNLGANRISLKYANKKYVIDNLKIGDIVERH 494

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           + DGD+VLFNRQPSLHRMSIMCH+AR+M ++T RFNE VC+PYNADFDGDEMN+HVPQTE
Sbjct: 495 ICDGDIVLFNRQPSLHRMSIMCHKARVMDYKTFRFNECVCSPYNADFDGDEMNLHVPQTE 554

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           E+R EAL LM V++NL TPKNGE+++A TQDFL++S++IT KDTF DR  F L+C Y  D
Sbjct: 555 ESRAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYVITNKDTFLDRDLFCLLCSYFSD 614

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
               ++LP PAILKP ELWTGKQL SVLI+P+ +    +N  +KE+ YS K     GD  
Sbjct: 615 AKIDIELPVPAILKPKELWTGKQLISVLIKPNKSENTIINFEMKEREYSTK----NGD-- 668

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
             ++ +  +D +V F  SELI G LGK  LG  +K GL+  L+ +         MNR +K
Sbjct: 669 --LKYLSRDDSYVCFYKSELICGSLGKKVLG-ASKYGLFYYLIHNNSTQIALQIMNRFSK 725

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           LS+R+  N G +IGIDDV P + L+DKK  L+   YE  N +I  YNE K+Q++PGC   
Sbjct: 726 LSSRYFSNKGMTIGIDDVTPSRVLTDKKRDLLLNGYEKVNKEIILYNEKKMQIQPGCTLE 785

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           +TLE  +  IL+ +R DAGK C   LP+ N PLIM   G+KG+ INI+QM+ACVGQQ+V 
Sbjct: 786 ETLEIKVKSILDDLRNDAGKTCNQYLPYLNKPLIMFNSGAKGALINIAQMIACVGQQNVS 845

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R  NGFI+R+LPHF    K   ++GFV NSFY+GL+ TEFFFHTM GREGLVDTAVKT
Sbjct: 846 GQRIQNGFINRTLPHFNFHCKGSESRGFVQNSFYTGLNPTEFFFHTMSGREGLVDTAVKT 905

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           A+TGYM RRL+KALEDLSI YD SVR+    I+QF+YGDD ++P+ ++        FD++
Sbjct: 906 AETGYMQRRLMKALEDLSIHYDYSVRSCDKQIIQFIYGDDALNPSYIDSNHTYMDQFDKI 965

Query: 797 LMKVKATCPPAGQRYLSPQQVSE 819
              + +  P        P+++ +
Sbjct: 966 YNHIISISPSHTLFLYKPRKIKQ 988



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 5/96 (5%)

Query: 840  SLRKFFEGQQD-KLDKKIKFVEDIGWDDKSQILEE----VTHKTSGITEKQLEVFIQTCF 894
            ++ KFF+ ++  +L KK  +   +  +DK    +     + +  S I  KQL +FI    
Sbjct: 1395 NIYKFFKYKKGVELIKKNDYYNFVKGNDKCNFYDSSYRSMIYDYSFINLKQLYIFIYFNI 1454

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHF 930
            S+Y       G A+G+I AQSIGEPGTQMTLKTFHF
Sbjct: 1455 SKYFKYISSPGDAVGSISAQSIGEPGTQMTLKTFHF 1490


>gi|399218552|emb|CCF75439.1| unnamed protein product [Babesia microti strain RI]
          Length = 1459

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/799 (48%), Positives = 526/799 (65%), Gaps = 42/799 (5%)

Query: 1   MRNPKMEALRKTD------LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD 54
           M+  K +AL  TD      L K +V +C     K +KCPRC    G +K+ V        
Sbjct: 120 MKRFKDQALITTDPLAKKILFKRLVAECR----KVIKCPRCNSTQGSLKRIVK------- 168

Query: 55  RSKVTESLQEFASAITHTKESKAAVNVATY--ILNPVNVLFLFKRMTDTDCEVLYLSERP 112
                 +L +F   I HT + K    + T    L+P+ V  LFK +      VL + ++P
Sbjct: 169 -----PTLDQFMK-IRHTVKQKQGGKMQTVEEDLDPLYVKSLFKSINPAHLLVLNI-DKP 221

Query: 113 EKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLA 172
           E LII++I VPP  IRPSV +D   S E+D+T  L  I+  N  ++ +        + + 
Sbjct: 222 ENLIISSIPVPPSCIRPSVTLDEHGSTEDDLTCILSDIVDLNNLIKSQCKNGFQTNQFIG 281

Query: 173 GWETLQVEVAQYINSD---VRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
            W+ +Q++  +YINS+   V  +  +  + +   G  QRLKGK+GRFRGNLSGKRV+++ 
Sbjct: 282 NWQFMQLQCTRYINSESPAVSQLLATKNITKSSRGICQRLKGKEGRFRGNLSGKRVDFSA 341

Query: 230 RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
           RTVISPDPN+ I +V +P  +A+ LTYPERV+  NI  L++ + NGPD +PGA  +   D
Sbjct: 342 RTVISPDPNVGIDQVVVPKYIAQRLTYPERVNTTNINILKRAVLNGPDSWPGACYVNKLD 401

Query: 290 GT-ARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 348
           G+   + Y   +N ++  L  G IV+RH+ DGD+VLFNRQPSLHRMSIM HRA +M   T
Sbjct: 402 GSKCNLRYANPKN-VSERLAVGDIVERHIWDGDIVLFNRQPSLHRMSIMAHRAIVMQGST 460

Query: 349 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDF 408
           LRFNE VC+PYNADFDGDEMN+H PQTEEAR EA  LMGV NNL +PKNGE LVA+ QDF
Sbjct: 461 LRFNECVCSPYNADFDGDEMNLHFPQTEEARAEAFHLMGVLNNLTSPKNGEPLVAAVQDF 520

Query: 409 LTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
           L++S+L+T KD F D+     +CC   DG++ +D+P PAI+ P++LWTGKQ+FS+L+ P+
Sbjct: 521 LSASYLLTSKDYFLDKKKIFNLCCSFCDGIEHIDVPPPAIIYPIQLWTGKQVFSLLLSPN 580

Query: 469 ANMRVYVNLTVKEKTY----SNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKA 524
              R Y+NL +KE+ +    SN  +    D       M P+DG+V   NSEL+ G +GK 
Sbjct: 581 RKDRTYINLELKEREFKPYKSNTSVYGNSD------VMSPSDGYVVVSNSELMCGSVGKN 634

Query: 525 TLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKK 584
           TLG G K GL   LLR+ G+ +TS  ++R++KL+ RW+  +G SIGIDDV P  EL  +K
Sbjct: 635 TLGPG-KSGLIFHLLRNQGSKSTSKFLSRISKLTCRWLCEYGLSIGIDDVIPSHELILEK 693

Query: 585 GKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW 644
           G +++  Y+  + +I++YN G++Q K GC A +TLE +I   L+ +R  AGK C   LP 
Sbjct: 694 GVVLNNGYKKVDHEIEKYNRGEIQAKFGCSAQETLELIIKGELDDLRNQAGKVCYEHLPP 753

Query: 645 RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 704
           +N PLIM   G+KGS INI+QM+ACVGQQ+V G+R  NGF++RSLPHF   + EP ++GF
Sbjct: 754 QNKPLIMFNSGAKGSLINIAQMIACVGQQNVSGQRIQNGFVNRSLPHFEMDSLEPKSRGF 813

Query: 705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
           VANSF++GL   EFFFHTM GREGL+DTAVKTA+TGYM RRL+KALEDLS+ YD++VR +
Sbjct: 814 VANSFFTGLDPQEFFFHTMSGREGLIDTAVKTAETGYMQRRLMKALEDLSVCYDHTVRTS 873

Query: 765 GGCIVQFLYGDDGMDPANM 783
            G +VQFLYGDDG+ P ++
Sbjct: 874 DGQVVQFLYGDDGISPCSL 892



 Score =  317 bits (811), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 186/365 (50%), Positives = 230/365 (63%), Gaps = 17/365 (4%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            IT + L     +C+  Y+    E G A+GA+GAQSIGEPGTQMTLKTFHFAGVASMN+T 
Sbjct: 1101 ITLRHLYNLCISCWRDYKNAIAEPGDAVGALGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1160

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRL 1000
            GVPRIKEIIN    I TPII   L  +  E AA + K RIEKT +G + K  + + +   
Sbjct: 1161 GVPRIKEIINATANIQTPIIEVPLVSSKFE-AALINKYRIEKTTIGNICKKFEDIYSPHG 1219

Query: 1001 ASIVIALDMETIQDAHLCINADIVKESIV---QTPKIKLKQQHIKVLDFRKLEIFPPVDK 1057
            + I++ +D     D  LCI+A+ VKE IV      KI+L +  I VLD  +L I  P   
Sbjct: 1220 SFIILTIDQGICADLGLCISANHVKEVIVGYSSINKIRLDKNSIYVLDNDRLAILVPHTN 1279

Query: 1058 SKIH-FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQ 1116
              ++ F+  SL + L  +++ G K V+R VI          KE GE   Y L VEG GL 
Sbjct: 1280 CGLYMFQKQSLIDGLMSLVLSGEKFVKRGVIK---------KEGGE---YHLAVEGYGLL 1327

Query: 1117 AVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADL 1176
             +MG  G+ G K KSNH+ EV + LGIEAAR  II EI + M A+ + ID RHM LL D+
Sbjct: 1328 NIMGIPGVVGTKVKSNHVIEVAKVLGIEAARSVIISEICKCMDAYSIEIDYRHMCLLGDV 1387

Query: 1177 MTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPM 1236
            MTFRGEVLGI RFGIQKM  S LMLASFE+T +HLF A+V+ R D I GVSECII G P+
Sbjct: 1388 MTFRGEVLGINRFGIQKMRTSTLMLASFEETNEHLFEAAVHNRRDPICGVSECIITGKPI 1447

Query: 1237 PLGTG 1241
             LGTG
Sbjct: 1448 KLGTG 1452


>gi|214028076|gb|ACJ63307.1| RNA polymerase III large subunit [Asparagus officinalis]
          Length = 544

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/557 (65%), Positives = 436/557 (78%), Gaps = 19/557 (3%)

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +HVPQTEEARTEA  LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL
Sbjct: 1   LHVPQTEEARTEAFTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 60

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           MC Y+GDGM+ +DLP PA++KP+ELWTGKQLFSV++RP+A  RV+VN  VKE+ +     
Sbjct: 61  MCSYIGDGMEVIDLPPPALIKPIELWTGKQLFSVIVRPNAQTRVFVNFVVKERIHVKD-- 118

Query: 490 RTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSG 549
                     ETMCP+DG+VYFRNS+LI GQLGK TLGNGNK+GL+SVLLRDY +   + 
Sbjct: 119 ---------TETMCPHDGYVYFRNSDLICGQLGKVTLGNGNKNGLFSVLLRDYNSDVAAS 169

Query: 550 CMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQL 609
           CMNRLAKLSARWIGNHGFSIGIDDVQP + L+ +K   I + Y  C   I+ Y   KL+L
Sbjct: 170 CMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKMTIDDGYGRCISFIELYENRKLKL 229

Query: 610 KPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVAC 669
           +PG +AA+TLE  IT++LN IR+ AG  CM  L WRNSPLIMSQCGSKGS INISQM+AC
Sbjct: 230 RPGANAAETLEVEITEVLNEIRKTAGDVCMKELHWRNSPLIMSQCGSKGSAINISQMIAC 289

Query: 670 VGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
           VGQQSVGGRRAPNGFIDR+LPHFP K+K PAAKGFVANSFY+GL+ATEFFFHTMGGREGL
Sbjct: 290 VGQQSVGGRRAPNGFIDRTLPHFPIKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGL 349

Query: 730 VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGE 789
           VDTAVKTA+TGYMSRRL+K+LEDLS+ YD +VR++ G +VQF+YGDDGMDPA MEG++G 
Sbjct: 350 VDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSSNGGVVQFIYGDDGMDPAKMEGENGT 409

Query: 790 PLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG---KESCSEAFLNSLRKFFE 846
           PLN D+L  KV ATCP   Q  LSP ++  ++ ++L+ Y    +  CS AF N L  F  
Sbjct: 410 PLNLDQLYKKVMATCPCRPQDSLSPSEIICLINERLSKYDMTPEGGCSSAFKNLLLDFLH 469

Query: 847 GQQDKLDK---KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVE 903
               +L K   +++  ED    + S +LE V    SGI+ +QL+VF++TC SRY  K++E
Sbjct: 470 KHVAELRKTRIRLQLQED--HKETSSVLENVAANISGISAQQLKVFMETCISRYHKKKLE 527

Query: 904 AGTAIGAIGAQSIGEPG 920
           AG AIGAIGAQSIGEPG
Sbjct: 528 AGAAIGAIGAQSIGEPG 544


>gi|221058803|ref|XP_002260047.1| DNA-directed RNA polymerase 3 largest subunit [Plasmodium knowlesi
           strain H]
 gi|193810120|emb|CAQ41314.1| DNA-directed RNA polymerase 3 largest subunit,putative [Plasmodium
           knowlesi strain H]
          Length = 1970

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/830 (46%), Positives = 517/830 (62%), Gaps = 83/830 (10%)

Query: 28  KAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFAS--AITHTKESKAAVNVATYI 85
           K  KC RCGY  G++KK +              SL +F     +   KE+   V +    
Sbjct: 173 KVTKCYRCGYPQGVIKKIIK------------PSLDQFMKLKHVIKIKENGKMV-IKEDD 219

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITE 145
           LN + VL LFK M     ++L + E PEKL+IT + VPP  IRPSVI+D   + E+D+T 
Sbjct: 220 LNSLYVLNLFKNMNPYHVKLLNV-ENPEKLLITALLVPPNTIRPSVIIDEHGTAEDDLTC 278

Query: 146 RLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSD---VRGVPFSMQVARPL 202
            L  I Q N ++  +        + L   E LQ+++ ++INSD   V  +  +  +++P 
Sbjct: 279 ILSEITQLNNTINNQCSNGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQNISKPG 338

Query: 203 SGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSD 262
            G  QRLKGK+GRFR NLSGKRV+++ RTVISPDPN+ I EV IP  +A  LTYPE+V+ 
Sbjct: 339 RGICQRLKGKEGRFRCNLSGKRVDFSSRTVISPDPNISIDEVVIPEIIAMRLTYPEKVNR 398

Query: 263 HNIEKLRQCIQNGPDKYPGARMI----------------------------RY--PDGTA 292
           +NIE+L++ I+NG + +PGA  I                            RY    G  
Sbjct: 399 YNIERLKKFIKNGTNTWPGANYIIKKACNQRISSGGVGAPSQGDSIIDVVKRYVGKGGGD 458

Query: 293 RVLYGKFR---------------NQLAVELKSGCIVDRHLEDGD----------VVLFNR 327
            +  G++                N+++++  +   +  +L+ GD          +VLFNR
Sbjct: 459 SLTTGQYPSTGELADSRRGNPSINKISLKYANKKFIIENLQVGDIVERHLVDGDIVLFNR 518

Query: 328 QPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMG 387
           QPSLHRMSIMCH+AR+M ++T RFNE VC+PYNADFDGDEMN+HVPQTEEAR EAL LM 
Sbjct: 519 QPSLHRMSIMCHKARVMKYKTFRFNECVCSPYNADFDGDEMNLHVPQTEEARAEALYLMN 578

Query: 388 VQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPA 447
           V++NL TPKNGE+++A TQDFL++S++IT KDTF DR +F L+C Y  D    ++LP PA
Sbjct: 579 VKHNLITPKNGEVMIALTQDFLSASYVITNKDTFLDRDSFCLLCSYFSDAKVDIELPVPA 638

Query: 448 ILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDG 507
           ILKP ELWTGKQL SVLI+P+      +N  +KE+ YS K     GD    ++ MC ND 
Sbjct: 639 ILKPKELWTGKQLISVLIKPNRKENTIINFEMKEREYSTK----NGD----LKYMCLNDS 690

Query: 508 FVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGF 567
           +V F  SELI G LGK  LG  +K GL+  L+    +H     MNR +KL++R+  N G 
Sbjct: 691 YVCFYKSELICGSLGKKVLG-SSKYGLFYYLIHHNSSHVAVKVMNRFSKLTSRYFSNKGM 749

Query: 568 SIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDIL 627
           +IGIDDV P + L  KK  L+ E YE  N +I  YNE K+Q++PGC   +TLE  + +IL
Sbjct: 750 TIGIDDVTPSETLIQKKKDLLQEGYEKVNKEIVLYNEKKMQIQPGCTLEETLEIKVKNIL 809

Query: 628 NRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDR 687
           + +R DAGK C   L   N PLIM   G+KG+ INI+QM+ACVGQQ+V G+R  NGFI+R
Sbjct: 810 DDLRNDAGKTCNQYLDHLNKPLIMFNSGAKGALINIAQMIACVGQQNVTGQRIKNGFINR 869

Query: 688 SLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLI 747
           +LPHF    K+  ++GFV NSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+
Sbjct: 870 TLPHFNFHCKDSESRGFVQNSFYSGLNPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLM 929

Query: 748 KALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           KALEDLSI YD SVR+    IVQF+YGDD ++P+ ++  +     FD++ 
Sbjct: 930 KALEDLSIHYDYSVRSCDKQIVQFIYGDDALNPSYVDNNNSYVHQFDKIF 979



 Score =  150 bits (380), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/140 (52%), Positives = 97/140 (69%)

Query: 1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
            Y +LVEG  L  V+G EG+D     SNH+  V Q LGIEAAR+ II+EI + ++A+ + I
Sbjct: 1788 YSILVEGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARVTIINEIKKCVEAYSIDI 1847

Query: 1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
            D RH+MLLAD+M F G++LGI RFGIQK   S LMLASFE+T +HLF +S     D I  
Sbjct: 1848 DIRHIMLLADIMAFTGDILGINRFGIQKARHSTLMLASFEETNEHLFVSSFFKNKDEINN 1907

Query: 1226 VSECIIMGIPMPLGTGILKI 1245
            +SE II+G  +P+GTG  ++
Sbjct: 1908 ISESIIVGKNIPIGTGSFQL 1927



 Score =  150 bits (378), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 91/213 (42%), Positives = 132/213 (61%), Gaps = 4/213 (1%)

Query: 884  KQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVP 943
            KQL +FI    S+Y       G A+G+I AQSIGEPGTQMTLKTFHFAGVASMNIT GVP
Sbjct: 1427 KQLYLFIFFNVSKYFKYISSPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNITLGVP 1486

Query: 944  RIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASI 1003
            RIKEIIN +  I TPI+   L+  DN N A ++K ++EKT +  +   IK   TSR   +
Sbjct: 1487 RIKEIINASSNIQTPILNIPLQVKDNYNFALMMKSKLEKTTIRDICLYIKEDYTSRGIFL 1546

Query: 1004 VIALDMETIQDAHLCINADIVKESIVQTP---KIKLKQQHIKVLDFRKLEIFPPVDKSKI 1060
             +  + + I +  L INA  +K+ I++     KIK+ +  ++V++  KL +    D+  +
Sbjct: 1547 SVKFNEQLIHNLFLNINAYTIKDIIMRQSHINKIKINKIVVEVVNAYKLHMSLKNDEF-L 1605

Query: 1061 HFELYSLKNVLPMVIVKGIKTVERVVIAEKEKE 1093
             F++ SLK  L  +++ G K ++R +I ++E E
Sbjct: 1606 FFQIESLKKGLLDLLIHGDKDIKRCIIKKEEVE 1638


>gi|160331067|ref|XP_001712241.1| rpc1 [Hemiselmis andersenii]
 gi|159765688|gb|ABW97916.1| rpc1 [Hemiselmis andersenii]
          Length = 1323

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1266 (34%), Positives = 689/1266 (54%), Gaps = 105/1266 (8%)

Query: 10   RKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDR--SKVTESLQEFAS 67
            +K D +  I ++C  +      CP C   NG ++K    LG +HD    K  ++ Q F  
Sbjct: 135  QKLDYLSEISQECRQIDY----CPFCWSKNGSIRK-FGTLGFVHDFKFQKNKKNFQNFNC 189

Query: 68   AITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL---YLSERPEKLIITNIAVPP 124
            +        A++     IL+P+ +  +F++++  D E+L    +   P  LI+  + VPP
Sbjct: 190  S--------ASLVFTEKILDPLGIFKIFQKISREDWELLDFDSIETHPTHLILYYLPVPP 241

Query: 125  IAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQY 184
            + +RP+V +  + +NE+D+T +L  I   N  L+               W  LQ+E  +Y
Sbjct: 242  LGVRPTVFISETMTNEDDLTMKLTEIQFLNIQLKINFQTGIPFLAIKDTWSILQIECGKY 301

Query: 185  INSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEV 244
            +NS+   +    Q  + L     RLKGK GRFRGNLSGKRV ++GRTVISPDPNL +  +
Sbjct: 302  LNSEAFNLESGKQKFKSL---FNRLKGKNGRFRGNLSGKRVNFSGRTVISPDPNLPLNFL 358

Query: 245  AIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA 304
             +PI +A  LT+PERV+  NIE+L++ +  G  ++PGA  +       + +    + +  
Sbjct: 359  GLPIILATKLTFPERVNKFNIERLQRTVLRGATRFPGANFLIDLKNNKKHIENLSKKKEH 418

Query: 305  VELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFD 364
            +E+KSG  ++RHL++ D++LFNRQPSLHR+SIM HR +I+  +TL+ NE +C PYNADFD
Sbjct: 419  LEIKSGYKIERHLKNNDIILFNRQPSLHRISIMAHRTKIISGKTLKINECICKPYNADFD 478

Query: 365  GDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDR 424
            GDEMN+H+PQT++AR E++ L+ +  N+ +P  GE ++A+TQDFL++SF++T K+ F+  
Sbjct: 479  GDEMNIHIPQTQKARAESISLLNLVKNINSPGTGESMIAATQDFLSASFVLTSKNQFFSH 538

Query: 425  AAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVK---- 480
                 +   +  G    +   PA+LKP ++WTGKQ+FS+++              +    
Sbjct: 539  DQIGKILHLLELGNIEKENFIPALLKPFQMWTGKQIFSLIVFSKKKKDKNKKKNFQGSIF 598

Query: 481  ---EKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
               EK YS       G ++     +CP DG++ F+N  L++GQLGK++LG GNK  ++S 
Sbjct: 599  HLMEKNYS------LGKKQCS-PFLCPFDGWILFKNRNLLAGQLGKSSLGFGNKFSIFSS 651

Query: 538  LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNV 597
                   +    C+ +++K+++ W  + GFS GI+ + P K    KK  L+   Y +CN 
Sbjct: 652  FSIFNSNNFILNCLLKISKMTSSWFSDFGFSFGIESITPDKNQLKKKNILVRNCYNLCNS 711

Query: 598  KIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW-RNSPLIMSQCGS 656
             IK+ ++ K +        +  E+ I  I   +RED GK+      +  NS  IM+  GS
Sbjct: 712  FIKQNSKQKKK------KEKQSESSIQKIFCFLREDFGKSLFVFNKFSENSGKIMTSAGS 765

Query: 657  KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF--PRKAKEPAAKGFVANSFYSGLS 714
            KGS  N+SQM  C+GQQS+GG R   GF+ R LPHF   +    P+  GF+  SF  GL+
Sbjct: 766  KGSKNNLSQMSLCLGQQSIGGERIKKGFLKRILPHFYYSKMGCNPSQNGFIQRSFLQGLN 825

Query: 715  ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYG 774
            + +FFFH++ GREGLVDTA+KTA+TGY+ RRL+K LED+ I YD S R + G ++Q  +G
Sbjct: 826  SVDFFFHSIAGREGLVDTAIKTAETGYLQRRLMKTLEDVVIFYDYSARTSDGRLIQPKFG 885

Query: 775  DDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCS 834
             D ++P  +            +L  +  +       +   +      E+           
Sbjct: 886  LDCINPGKVS-----------ILFGLNNSYRKVENFHFWKKNNLNFSER----------- 923

Query: 835  EAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGI----TEKQLEVFI 890
            E F   LR F  G  D +    K + D+ +      L    ++   I     EK ++  +
Sbjct: 924  ETF---LRSFSFGDMDSIPFFFK-IRDLAYG-----LLNFKNQKKKIFFFDIEKNMKKIL 974

Query: 891  QTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN 950
            + C       ++E G+++GA+ AQSIGEPGTQMTL+TFH AG++ +NITQGVPRI EI+N
Sbjct: 975  ENC----SKLKMEPGSSVGALAAQSIGEPGTQMTLQTFHHAGISDLNITQGVPRINEIMN 1030

Query: 951  GAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDME 1010
             +K+I +PI++ +      +N  +  K +IEK   G++     I++ S L  I I     
Sbjct: 1031 ASKKILSPIVSFKFFNLGKKNFFQ-CKLQIEKIYFGEICSKFDIIIDSELIFIDIFFKKN 1089

Query: 1011 TIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP--PVDKSKIHF-EL--- 1064
             ++   L +N   + + I        K +         + IFP  P +K    + EL   
Sbjct: 1090 FLKKLGLNLNFKKIVQKIGGINSFWNKSRFFYQKSRYFMRIFPSKPTEKKTFSYIELLKI 1149

Query: 1065 -YSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGE-KKKYRLLVEGTGLQAVMGAE 1122
             YS K     + + G    + +   +K +       N +    + LL     LQ++    
Sbjct: 1150 IYSCKKDFSQIEICGFSDSKNISFYQKFQISSVFCLNSKLLDAFDLLF--VNLQSIY--- 1204

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
                    SNHI  + +T GIEA+R  II EI +  + H +SI+K+H  LLA++MTF+G+
Sbjct: 1205 --------SNHILMILETFGIEASRKAIIIEIQKIFQLHNISINKKHFFLLAEIMTFQGK 1256

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            +LGITR+GI KM +++L+LASFEKT + LFNA++    D+I GVSE II+G   P GTG+
Sbjct: 1257 ILGITRYGISKMKENILVLASFEKTIETLFNAALKTSKDKILGVSESIILGRKPPNGTGL 1316

Query: 1243 LKIRQR 1248
            + +  R
Sbjct: 1317 VTLISR 1322


>gi|344251250|gb|EGW07354.1| DNA-directed RNA polymerase III subunit RPC1 [Cricetulus griseus]
          Length = 1076

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/915 (43%), Positives = 546/915 (59%), Gaps = 123/915 (13%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
           ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 108 LKRPGLTYLQKRGLKKKISDKCR----KKSTCHYCGAFNGTVKKC-GLLKIIHEKYKTNK 162

Query: 58  ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                 V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 163 KVVDPVVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 222

Query: 111 --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
             +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 223 AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 282

Query: 168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
              +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 283 QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 342

Query: 228 TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
           +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ ++NGPD +PGA  I  
Sbjct: 343 SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQ 402

Query: 286 RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
           R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 403 RHMQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 461

Query: 346 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
            RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 462 HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 521

Query: 406 QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
           QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 522 QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 581

Query: 463 VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
           +++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 582 IILRPSDDSPVRANLRTKGKQYCGK-----------GEDLCVNDSYVTIQNSELMSGSMD 630

Query: 523 KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
           K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 631 KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 690

Query: 583 KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
            K +L++  Y+ C+  I+  N GKLQ +PGC A +TLEA+I   L+ IR+ AG AC+  L
Sbjct: 691 AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 750

Query: 643 PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
              NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K     
Sbjct: 751 DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSK----- 805

Query: 703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
                                                    RRL+K+LEDL  QYD +VR
Sbjct: 806 -----------------------------------------RRLVKSLEDLCSQYDLTVR 824

Query: 763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
           ++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +K                     
Sbjct: 825 SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIK--------------------- 862

Query: 823 KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
                             ++ F +G  +K+ K     +  G +D       V ++   IT
Sbjct: 863 -----------------EIKTFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 902

Query: 883 EKQLEVFIQTCFSRY 897
             Q+E F++TC  +Y
Sbjct: 903 PTQIEKFLETCRDKY 917



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 39/48 (81%)

Query: 1178 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
            +  GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + G
Sbjct: 1016 SVEGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCG 1063


>gi|196004558|ref|XP_002112146.1| hypothetical protein TRIADDRAFT_55878 [Trichoplax adhaerens]
 gi|190586045|gb|EDV26113.1| hypothetical protein TRIADDRAFT_55878 [Trichoplax adhaerens]
          Length = 941

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/944 (43%), Positives = 548/944 (58%), Gaps = 164/944 (17%)

Query: 14  LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFA------- 66
           L K + +KC  MA     CP CG ING+VKKA     IIH++ ++ + L   A       
Sbjct: 142 LQKKVHEKCRKMAV----CPSCGAINGIVKKA-GSFKIIHEKHRLNKKLSSIAISQTQDL 196

Query: 67  --SAITHTKESKAAV-NVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNI 120
              A+   K+ +  V + +  ILNP+ VL LF  M+D DC ++ +   + RPE LII  +
Sbjct: 197 LQDAVESNKDLENFVASKSQEILNPLLVLKLFSGMSDEDCLLVGMKPNNGRPEDLIIERL 256

Query: 121 AVPPIAIRPSVIMDGSQ-SNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQV 179
            VPP+ IRPSV+ D    SNE+D+T +L  II  +  + +           +  W+ LQ+
Sbjct: 257 LVPPLCIRPSVMTDSQMGSNEDDLTMKLTEIILISDYINRSRQNGAKIQILMELWDNLQI 316

Query: 180 EVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
            V+ YINS+  G+P+  Q  RP+ GF QRLKGK GRFRGNLSGKRV+Y+ RTVISPDPNL
Sbjct: 317 HVSLYINSETSGLPYGSQPNRPIRGFCQRLKGKSGRFRGNLSGKRVDYSTRTVISPDPNL 376

Query: 240 KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTAR--VLYG 297
           +I EVAIP  +A  LTYP++V   NI  L++ I NG DK+PGA  +       R  + YG
Sbjct: 377 RIDEVAIPYPVAMTLTYPQKVCRANIRFLKKLILNGADKHPGANFVMEEKTKLRKYLKYG 436

Query: 298 KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCN 357
             R ++A +LK                                A+IMP RT RFNE VC 
Sbjct: 437 N-RGKIAKDLK--------------------------------AKIMPNRTFRFNECVCT 463

Query: 358 PYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR 417
           P+NADFDGDEMN+H+PQTEEAR EAL+LM  ++N+ TP++GE L+A+ QDF+T ++L+T+
Sbjct: 464 PFNADFDGDEMNIHLPQTEEARAEALVLMQSKSNMVTPRSGEPLIAAIQDFITGAYLLTQ 523

Query: 418 KDTFYDRAAFSLMCCYMGD---GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVY 474
           KD F DRA  S  C  M D       +DLP P+I+KPV+LWTGKQ+ S L+ P   +  +
Sbjct: 524 KDVFLDRAKVSQFCSSMLDSRTASTEIDLPVPSIIKPVQLWTGKQVISALLSPLDVVFAF 583

Query: 475 VNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGL 534
             L                               V F N E I G L K+TLG+G++   
Sbjct: 584 CVLLD-----------------------------VVFHNGEHICGVLDKSTLGSGSR--- 611

Query: 535 YSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEV 594
                                        N GFSIGI DV P+  + + K +L+   Y+ 
Sbjct: 612 ----------------------------SNRGFSIGISDVTPEINVINGKRELVKNGYDK 643

Query: 595 CNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQC 654
           C+  I+++ +G+L  +PG  A +TLEAVI   L+ IREDAGK C+  L   N+PL M+ C
Sbjct: 644 CDQHIQDFKDGRLHNQPGFTADETLEAVILRELSVIREDAGKICLKELHPSNAPLTMALC 703

Query: 655 GSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLS 714
           GSKGS INISQM++CVGQQ+V GRR PNGF +R+LP+F R +K PAAKGFV NSFYSGL 
Sbjct: 704 GSKGSNINISQMISCVGQQAVSGRRIPNGFENRALPYFDRDSKVPAAKGFVENSFYSGLE 763

Query: 715 ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYG 774
            TEFFFHTM GREGLVDTAVKTA+TGY+ RRLIK+LEDL+I+YD +VRN+ G IVQF YG
Sbjct: 764 PTEFFFHTMAGREGLVDTAVKTAETGYLQRRLIKSLEDLAIRYDTTVRNSVGGIVQFKYG 823

Query: 775 DDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCS 834
            DG+DP+ ME K  +P++++ LL  +KA        Y     ++ I  KQ          
Sbjct: 824 HDGLDPSLMESKD-QPIDYNHLLYHIKAV------SYFLRNYINRIASKQ---------- 866

Query: 835 EAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCF 894
                                    ++  +   + IL+        ITE QL+ FIQ+C 
Sbjct: 867 ------------------------PQNRKYGPHTPILDH------HITEIQLKQFIQSCG 896

Query: 895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNI 938
           ++Y   ++E GTA+GAI AQSIGEPGTQMTLKTFHFAGVA+MNI
Sbjct: 897 NKYVRAKIEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVAAMNI 940


>gi|408402779|ref|YP_006860762.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
            gargensis Ga9.2]
 gi|300521498|gb|ADK25960.1| RNA polymerase A [Candidatus Nitrososphaera gargensis]
 gi|408363375|gb|AFU57105.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
            gargensis Ga9.2]
          Length = 1273

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1180 (36%), Positives = 654/1180 (55%), Gaps = 119/1180 (10%)

Query: 86   LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
            L P+ +      + D D  +L     + RPE  ++  + VPP+ +RPS+I++    +E+D
Sbjct: 177  LLPITIRERLSHIPDDDLTLLGYDPRTARPEWFVLQVLPVPPVTVRPSIILETGIRSEDD 236

Query: 143  ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARP 201
            +T +L  II+ N  L++               + LQ  V  Y +++V G+P +     RP
Sbjct: 237  LTHKLVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHVTTYFDNEVSGIPQAHHRSGRP 296

Query: 202  LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
            L    QRLKGK+GRFRG+LSGKRV+++ RTVISPDPNL I +V +P  +A+ LT PE VS
Sbjct: 297  LKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLTIADVGVPTDVAKKLTIPETVS 356

Query: 262  DHNIEKLRQCIQNGPDKYPGARMIRYPDGTA-RVLYGKFRNQLAVELKSGCIVDRHLEDG 320
              N+E+L++ + NGP+ YPGA  I  PDG   R+ Y   R  +A  L  G IV+RHL DG
Sbjct: 357  QWNVERLKELVMNGPNTYPGANYIIRPDGVKIRLDYVTDRKAIADSLAPGYIVERHLADG 416

Query: 321  DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
            D+V+FNRQPSLHRMSIM H  +++P+RT R + +VC PYNADFDGDEMN+HVPQ+EEAR 
Sbjct: 417  DIVIFNRQPSLHRMSIMAHSVKVLPYRTFRLHPAVCPPYNADFDGDEMNLHVPQSEEARA 476

Query: 381  EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG-DGMD 439
            EA LLM VQ+ L +P+ G  ++   +DF+T +F++TR  T   +  F+ +    G +G  
Sbjct: 477  EATLLMRVQDQLISPRYGGPIIGGIRDFITGAFMLTRDGTTLTKDEFANLAMIGGYEG-- 534

Query: 440  RVDLPTPAILKPVE-LWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
               LP PAI K  + L++G+QLFS+ +    N  +         +  NK  + EG +   
Sbjct: 535  --PLPEPAITKDGQRLYSGRQLFSLFLPKDFNFII--------TSKWNKAAKGEGKD--- 581

Query: 499  IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                      V  +N ELISG + KA++G    D +   + +DYG +A    ++ +  + 
Sbjct: 582  ----------VVIKNGELISGVIDKASIGAEEPDSVLHRIAKDYGTNAARKFLDSILTML 631

Query: 559  ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              +I + GF+ G  D+    E   +   +I + YE     I++YN+G L L  G  A + 
Sbjct: 632  KTYITHRGFTYGYSDLWLSPETRQEINDIIQKTYEKVYELIQQYNDGTLPLTRGLAAEEA 691

Query: 619  LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            LE  + + L+R R+ AG+    + P  NS +IM+  G++GS +NI QM A +GQQS+ G+
Sbjct: 692  LELYVVNELSRARDRAGRTADRAFPDENSGVIMASTGARGSTLNIGQMTAALGQQSIRGK 751

Query: 679  RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
            R   G+ +R+L HF      P AKGFV +++  GLS  EFFFH MGGREGLVDTAV+T  
Sbjct: 752  RIQKGYHNRALSHFKPNDANPDAKGFVKSNYRDGLSPLEFFFHAMGGREGLVDTAVRTQQ 811

Query: 739  TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
            +GYM RRLI ALE L I+YD +VR+  G IVQ+LYG+DG+DPA  +   GE +N  RL+ 
Sbjct: 812  SGYMQRRLINALEHLKIEYDQTVRDPHGNIVQYLYGEDGIDPAKSD--HGEAVNISRLI- 868

Query: 799  KVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKF 858
                             +   IV++     G+++  +   + + K+ E    ++   +  
Sbjct: 869  -----------------EAESIVDE-----GRKATEDVIKSIIAKYAENLNPRMKANL-- 904

Query: 859  VEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGE 918
                    +  +LE      + ++++ +E  ++           E G A+G + AQSIGE
Sbjct: 905  --------EKALLE------NRLSKEGVEKVMKKVLDLIDRALAEPGEAVGVVTAQSIGE 950

Query: 919  PGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKG 978
            PGTQMTL+TFHFAGV   N+T G+PR+ E+++  K+  TP  T ++  ++    +R    
Sbjct: 951  PGTQMTLRTFHFAGVKERNVTLGLPRLIELVDARKKPVTP--TMDIYLDEEHRVSR---- 1004

Query: 979  RIEKTLLGQVAKSIKIVMTSRLASIV--IALDMETIQDAHL---------CINADI--VK 1025
              EK L  +VA+ I   + +R+  ++     D   +   HL         C  AD+  V 
Sbjct: 1005 --EKAL--EVAREI---LFTRIGDLIERSETDYSGVLTFHLSEAKLAERGCTFADVQEVL 1057

Query: 1026 ESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERV 1085
            E   +   +K  +  + +    K+ +    D   +      L N      VKG+  +ERV
Sbjct: 1058 EGSKKKYTVKPNENKLSI----KITVPDEPDAQTLLTLKSKLLNTR----VKGVPDIERV 1109

Query: 1086 VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
             I ++++E            + +   G+ L  V+  +G+D  +  +N+++E+ QTLGIEA
Sbjct: 1110 TIVKQDEE------------WVIQTAGSNLAKVVAVDGVDLTRVTTNNVYEIWQTLGIEA 1157

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
            AR  +I EI  T++  G+ +D RH+ML+ADLMT +G +  I R GI     SVL  A+FE
Sbjct: 1158 ARTALIKEITNTLEEQGLEVDTRHIMLVADLMTSKGYLQQIGRHGIAGTKTSVLARAAFE 1217

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             T   +  AS+ G+ + ++GV+E +I+G  +P+GTG++ +
Sbjct: 1218 ITVPTIARASLEGQIETLKGVTENVIVGATVPVGTGMVDL 1257


>gi|32398906|emb|CAD98371.1| DNA-directed RNA polymerase II/III subunit, probable
           [Cryptosporidium parvum]
          Length = 1907

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/817 (45%), Positives = 517/817 (63%), Gaps = 39/817 (4%)

Query: 15  MKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKE 74
            + +V++C     K   CPRC    G +++ +              +L +F   +THT  
Sbjct: 200 FRKLVERCK----KVKTCPRCMSQQGQLRRTIR------------PTLDQFMK-LTHT-- 240

Query: 75  SKAAVNVATYI--LNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVI 132
               V+   Y+  L P+ V  L +R+   D ++L  + +P  L+I+ + VPP  IRPSV 
Sbjct: 241 --IKVDGKEYVEDLTPIFVQTLLERVPYQDLDILE-TFKPGNLLISRLPVPPNCIRPSVT 297

Query: 133 MDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGV 192
           M  S SNE+D+T  L  I   N  ++ ++      F+ L  WE LQ++  + IN+D  GV
Sbjct: 298 MGESGSNEDDLTVILSEITDLNNIIKSQMKSGFQTFQLLGNWEFLQLQCTRLINADAPGV 357

Query: 193 P---FSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIR 249
                S  + +   G  QRLKGK+GRFRGNLSGKRV+++GRTVISPDPN+++ EV +P+ 
Sbjct: 358 NQLLASKNIPKAGRGVCQRLKGKEGRFRGNLSGKRVDFSGRTVISPDPNIEVDEVVVPMI 417

Query: 250 MARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKS 309
           +A+ LTYPERV+  NI+ LR+ + NG D +PGA  +   +G+   L    R  ++  L+ 
Sbjct: 418 IAKKLTYPERVNAINIDSLREAVLNGHDIWPGACYVYKSNGSKSSLRYANRRVVSERLEI 477

Query: 310 GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMN 369
           G IV+RH++ GD+VLFNRQPSLHR+SIM H+  +MPWRT RFNE  C PYNADFDGDEMN
Sbjct: 478 GDIVERHMKTGDIVLFNRQPSLHRLSIMSHKVVVMPWRTFRFNECACAPYNADFDGDEMN 537

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +H+PQ E AR+E+  LMG+ NNL TP+NGE L+A+TQDFL   +++T +D F  R  FS 
Sbjct: 538 LHLPQNELARSESKHLMGLMNNLVTPRNGEPLIAATQDFLLGMYVLTGRDIFLTRDQFSQ 597

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHAN--MRVYVNLTVKEKTYSNK 487
            CC+  +G   ++LP P ILKPVELWTGKQ+F++++RP++N   R+ V+  +KE+ Y   
Sbjct: 598 YCCHFSNGQIPMELPPPTILKPVELWTGKQVFNMILRPNSNEKERIDVSFELKERDY--- 654

Query: 488 LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
                 D +  ++ +CPN+G+V  R+SEL++G +GK  LG G+K+GL+  +L +  A  +
Sbjct: 655 ------DSKSDLKDLCPNEGYVVVRHSELLAGAIGKKVLGGGSKEGLFFYILLENNAKKS 708

Query: 548 SGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL 607
           S CM R+++  +R++ N G +IGIDDV P  EL   K  L+ + Y+    +I  Y +GKL
Sbjct: 709 SECMGRISRFVSRYLANKGMTIGIDDVTPNAELLVAKKNLLEDGYQRVQDEINSYEKGKL 768

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
              PG     TLE  +  IL+ IR +AGKA   SLP  N PL+M   G+KG  INI+QMV
Sbjct: 769 TPHPGLSLEDTLELKVKKILDDIRNEAGKASHISLPPSNKPLLMYLSGAKGQLINIAQMV 828

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           ACVGQQ+V G+R  NGF +R+LPHF     +  ++GFV NSF+SGL   EFFFHTM GRE
Sbjct: 829 ACVGQQNVAGQRIQNGFTNRTLPHFKMNCVDGRSRGFVGNSFFSGLQPDEFFFHTMSGRE 888

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GLVDTAVKTA+TGYM RRL+KALEDL I+YD +VR + G I+QF+YGDDG++P  ME K 
Sbjct: 889 GLVDTAVKTAETGYMQRRLVKALEDLCIKYDQTVRTSDGQIIQFIYGDDGLNPMLMEEKL 948

Query: 788 GEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQ 824
            E +NF +L   + +        Y         +E Q
Sbjct: 949 -ELVNFGKLFKHIYSQTKVHSNFYFLFNNYLNFLENQ 984



 Score =  335 bits (859), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 199/396 (50%), Positives = 249/396 (62%), Gaps = 33/396 (8%)

Query: 880  GITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNIT 939
             IT +QL  FI+  +S+Y     E G A+GAI AQSIGEPGTQMTLKTFHFAGVASMN+T
Sbjct: 1472 AITIRQLYEFIKASWSKYMKAITEPGEAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVT 1531

Query: 940  QGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSR 999
             GVPRIKEIIN A +I TPII A+LE + + N A++VKG I KTLL +V   I+ + +  
Sbjct: 1532 LGVPRIKEIINAATKILTPIIEAKLENDSDFNYAQIVKGSIVKTLLNEVVSDIEELYSPN 1591

Query: 1000 LASIVIALDMETIQDAHLCINADIVKESIVQ---TPKIKLKQQHIKVLDFRKLEIFPPVD 1056
               I I L+ ETI+  +L INA  V++SIV      KIKLK + I+VLD  KL I     
Sbjct: 1592 GVFININLNEETIKGHYLDINAYTVRDSIVSHGPISKIKLKLEDIQVLDLWKLSILIGGG 1651

Query: 1057 KSKI--------------------------HFELYSLKNVLPMVIVKGIKTVERVVIAEK 1090
             S+I                          +F+   LK  L  V+V GI  ++R VI + 
Sbjct: 1652 ISQIGSSSNNINGTGNVNTLNTGIGNTMNVYFQTQLLKKGLQNVVVSGIPGIKRSVIRQD 1711

Query: 1091 EKEKRKVKENGEKKK-YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARIC 1149
            +KE       GEK+K Y L VEG GL  +MG  GI G  T SNH+ EV++ LGIEAAR  
Sbjct: 1712 DKEDPIT---GEKRKCYSLAVEGYGLLKLMGINGIIGTTTVSNHVMEVREVLGIEAARKV 1768

Query: 1150 IIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTAD 1209
            II E+ + M A+ M ID RH+ LLAD+MTFRG+VLGI+RFGIQKM  S LMLASFE+T +
Sbjct: 1769 IIQEVQKCMDAYSMDIDLRHIQLLADIMTFRGDVLGISRFGIQKMRTSTLMLASFEETNE 1828

Query: 1210 HLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            HLF A+   R D + GVSEC+IMG P+ +GTG   I
Sbjct: 1829 HLFEAAFQNRVDPVFGVSECVIMGKPIKIGTGSFDI 1864


>gi|66475716|ref|XP_627674.1| DNA-directed RNA polymerase III C1 subunit [Cryptosporidium parvum
           Iowa II]
 gi|46229106|gb|EAK89955.1| DNA-directed RNA polymerase III C1 subunit [Cryptosporidium parvum
           Iowa II]
          Length = 1871

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/817 (45%), Positives = 517/817 (63%), Gaps = 39/817 (4%)

Query: 15  MKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKE 74
            + +V++C     K   CPRC    G +++ +              +L +F   +THT  
Sbjct: 164 FRKLVERCK----KVKTCPRCMSQQGQLRRTIR------------PTLDQFMK-LTHT-- 204

Query: 75  SKAAVNVATYI--LNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVI 132
               V+   Y+  L P+ V  L +R+   D ++L  + +P  L+I+ + VPP  IRPSV 
Sbjct: 205 --IKVDGKEYVEDLTPIFVQTLLERVPYQDLDILE-TFKPGNLLISRLPVPPNCIRPSVT 261

Query: 133 MDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGV 192
           M  S SNE+D+T  L  I   N  ++ ++      F+ L  WE LQ++  + IN+D  GV
Sbjct: 262 MGESGSNEDDLTVILSEITDLNNIIKSQMKSGFQTFQLLGNWEFLQLQCTRLINADAPGV 321

Query: 193 P---FSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIR 249
                S  + +   G  QRLKGK+GRFRGNLSGKRV+++GRTVISPDPN+++ EV +P+ 
Sbjct: 322 NQLLASKNIPKAGRGVCQRLKGKEGRFRGNLSGKRVDFSGRTVISPDPNIEVDEVVVPMI 381

Query: 250 MARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKS 309
           +A+ LTYPERV+  NI+ LR+ + NG D +PGA  +   +G+   L    R  ++  L+ 
Sbjct: 382 IAKKLTYPERVNAINIDSLREAVLNGHDIWPGACYVYKSNGSKSSLRYANRRVVSERLEI 441

Query: 310 GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMN 369
           G IV+RH++ GD+VLFNRQPSLHR+SIM H+  +MPWRT RFNE  C PYNADFDGDEMN
Sbjct: 442 GDIVERHMKTGDIVLFNRQPSLHRLSIMSHKVVVMPWRTFRFNECACAPYNADFDGDEMN 501

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +H+PQ E AR+E+  LMG+ NNL TP+NGE L+A+TQDFL   +++T +D F  R  FS 
Sbjct: 502 LHLPQNELARSESKHLMGLMNNLVTPRNGEPLIAATQDFLLGMYVLTGRDIFLTRDQFSQ 561

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHAN--MRVYVNLTVKEKTYSNK 487
            CC+  +G   ++LP P ILKPVELWTGKQ+F++++RP++N   R+ V+  +KE+ Y   
Sbjct: 562 YCCHFSNGQIPMELPPPTILKPVELWTGKQVFNMILRPNSNEKERIDVSFELKERDY--- 618

Query: 488 LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
                 D +  ++ +CPN+G+V  R+SEL++G +GK  LG G+K+GL+  +L +  A  +
Sbjct: 619 ------DSKSDLKDLCPNEGYVVVRHSELLAGAIGKKVLGGGSKEGLFFYILLENNAKKS 672

Query: 548 SGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL 607
           S CM R+++  +R++ N G +IGIDDV P  EL   K  L+ + Y+    +I  Y +GKL
Sbjct: 673 SECMGRISRFVSRYLANKGMTIGIDDVTPNAELLVAKKNLLEDGYQRVQDEINSYEKGKL 732

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
              PG     TLE  +  IL+ IR +AGKA   SLP  N PL+M   G+KG  INI+QMV
Sbjct: 733 TPHPGLSLEDTLELKVKKILDDIRNEAGKASHISLPPSNKPLLMYLSGAKGQLINIAQMV 792

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           ACVGQQ+V G+R  NGF +R+LPHF     +  ++GFV NSF+SGL   EFFFHTM GRE
Sbjct: 793 ACVGQQNVAGQRIQNGFTNRTLPHFKMNCVDGRSRGFVGNSFFSGLQPDEFFFHTMSGRE 852

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GLVDTAVKTA+TGYM RRL+KALEDL I+YD +VR + G I+QF+YGDDG++P  ME K 
Sbjct: 853 GLVDTAVKTAETGYMQRRLVKALEDLCIKYDQTVRTSDGQIIQFIYGDDGLNPMLMEEKL 912

Query: 788 GEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQ 824
            E +NF +L   + +        Y         +E Q
Sbjct: 913 -ELVNFGKLFKHIYSQTKVHSNFYFLFNNYLNFLENQ 948



 Score =  335 bits (859), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 199/396 (50%), Positives = 249/396 (62%), Gaps = 33/396 (8%)

Query: 880  GITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNIT 939
             IT +QL  FI+  +S+Y     E G A+GAI AQSIGEPGTQMTLKTFHFAGVASMN+T
Sbjct: 1436 AITIRQLYEFIKASWSKYMKAITEPGEAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVT 1495

Query: 940  QGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSR 999
             GVPRIKEIIN A +I TPII A+LE + + N A++VKG I KTLL +V   I+ + +  
Sbjct: 1496 LGVPRIKEIINAATKILTPIIEAKLENDSDFNYAQIVKGSIVKTLLNEVVSDIEELYSPN 1555

Query: 1000 LASIVIALDMETIQDAHLCINADIVKESIVQ---TPKIKLKQQHIKVLDFRKLEIFPPVD 1056
               I I L+ ETI+  +L INA  V++SIV      KIKLK + I+VLD  KL I     
Sbjct: 1556 GVFININLNEETIKGHYLDINAYTVRDSIVSHGPISKIKLKLEDIQVLDLWKLSILIGGG 1615

Query: 1057 KSKI--------------------------HFELYSLKNVLPMVIVKGIKTVERVVIAEK 1090
             S+I                          +F+   LK  L  V+V GI  ++R VI + 
Sbjct: 1616 ISQIGSSSNNINGTGNVNTLNTGIGNTMNVYFQTQLLKKGLQNVVVSGIPGIKRSVIRQD 1675

Query: 1091 EKEKRKVKENGEKKK-YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARIC 1149
            +KE       GEK+K Y L VEG GL  +MG  GI G  T SNH+ EV++ LGIEAAR  
Sbjct: 1676 DKEDPIT---GEKRKCYSLAVEGYGLLKLMGINGIIGTTTVSNHVMEVREVLGIEAARKV 1732

Query: 1150 IIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTAD 1209
            II E+ + M A+ M ID RH+ LLAD+MTFRG+VLGI+RFGIQKM  S LMLASFE+T +
Sbjct: 1733 IIQEVQKCMDAYSMDIDLRHIQLLADIMTFRGDVLGISRFGIQKMRTSTLMLASFEETNE 1792

Query: 1210 HLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            HLF A+   R D + GVSEC+IMG P+ +GTG   I
Sbjct: 1793 HLFEAAFQNRVDPVFGVSECVIMGKPIKIGTGSFDI 1828


>gi|67612875|ref|XP_667260.1| DNA-directed RNA polymerase II/III subunit [Cryptosporidium hominis
           TU502]
 gi|54658380|gb|EAL37032.1| DNA-directed RNA polymerase II/III subunit [Cryptosporidium
           hominis]
          Length = 1869

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/817 (45%), Positives = 517/817 (63%), Gaps = 39/817 (4%)

Query: 15  MKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKE 74
            + +V++C     K   CPRC    G +++ +              +L +F   +THT  
Sbjct: 164 FRKLVERCK----KVKTCPRCMSQQGQLRRTIR------------PTLDQFMK-LTHT-- 204

Query: 75  SKAAVNVATYI--LNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVI 132
               V+   Y+  L P+ V  L +R+   D ++L  + +P  L+I+ + VPP  IRPSV 
Sbjct: 205 --IKVDGKEYVEDLTPIFVQTLLERVPYQDLDILE-TFKPGNLLISRLPVPPNCIRPSVT 261

Query: 133 MDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGV 192
           M  S SNE+D+T  L  I   N  ++ ++      F+ L  WE LQ++  + IN+D  GV
Sbjct: 262 MGESGSNEDDLTVILSEITDLNNIIKSQMKSGFQTFQLLGNWEFLQLQCTRLINADAPGV 321

Query: 193 P---FSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIR 249
                S  + +   G  QRLKGK+GRFRGNLSGKRV+++GRTVISPDPN+++ EV +P+ 
Sbjct: 322 NQLLASKNIPKAGRGVCQRLKGKEGRFRGNLSGKRVDFSGRTVISPDPNIEVDEVVVPMI 381

Query: 250 MARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKS 309
           +A+ LTYPERV+  NI+ LR+ + NG D +PGA  +   +G+   L    R  ++  L+ 
Sbjct: 382 IAKKLTYPERVNAINIDSLREAVLNGHDIWPGACYVYKSNGSKSSLRYANRRVVSERLEI 441

Query: 310 GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMN 369
           G IV+RH++ GD+VLFNRQPSLHR+SIM H+  +MPWRT RFNE  C PYNADFDGDEMN
Sbjct: 442 GDIVERHMKTGDIVLFNRQPSLHRLSIMSHKVVVMPWRTFRFNECACAPYNADFDGDEMN 501

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +H+PQ E AR+E+  LMG+ NNL TP+NGE L+A+TQDFL   +++T +D F  R  FS 
Sbjct: 502 LHLPQNELARSESKHLMGLMNNLVTPRNGEPLIAATQDFLLGMYVLTGRDIFLTRDQFSQ 561

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHA--NMRVYVNLTVKEKTYSNK 487
            CC+  +G   ++LP P ILKPVELWTGKQ+F++++RP++  N R+ V+  +KE+ Y   
Sbjct: 562 YCCHFSNGQIPMELPPPTILKPVELWTGKQVFNMILRPNSNENERIDVSFELKERDY--- 618

Query: 488 LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
                 D +  ++ +CPN+G+V  R+SEL++G +GK  LG G+K+GL+  +L +  A  +
Sbjct: 619 ------DSKSDLKDLCPNEGYVVVRHSELLAGAIGKKVLGGGSKEGLFFYILLENNAKKS 672

Query: 548 SGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL 607
           S CM R+++  +R++ N G +IGIDDV P  EL   K  L+ + Y+    +I  Y +GKL
Sbjct: 673 SECMGRISRFVSRYLANKGMTIGIDDVTPNAELLVAKKNLLEDGYQRVQDEINSYEKGKL 732

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
              PG     TLE  +  IL+ IR +AGKA   SLP  N PL+M   G+KG  INI+QMV
Sbjct: 733 TPHPGLSLEDTLELKVKKILDDIRNEAGKASHISLPPSNKPLLMYLSGAKGQLINIAQMV 792

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           ACVGQQ+V G+R  NGF +R+LPHF     +  ++GFV NSF+SGL   EFFFHTM GRE
Sbjct: 793 ACVGQQNVAGQRIQNGFTNRTLPHFKMNCVDGRSRGFVGNSFFSGLQPDEFFFHTMSGRE 852

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GLVDTAVKTA+TGYM RRL+KALEDL I+YD +VR + G I+QF+YGDDG++P  ME K 
Sbjct: 853 GLVDTAVKTAETGYMQRRLVKALEDLCIKYDQTVRTSDGQIIQFIYGDDGLNPMLMEEKL 912

Query: 788 GEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQ 824
            E +NF +L   + +        Y         +E Q
Sbjct: 913 -ELVNFGKLFKHIYSQTKVHSNFYFLFNNYLNFLENQ 948



 Score =  335 bits (860), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 199/396 (50%), Positives = 250/396 (63%), Gaps = 33/396 (8%)

Query: 880  GITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNIT 939
             IT +QL  FI+  +S+Y     E G A+GAI AQSIGEPGTQMTLKTFHFAGVASMN+T
Sbjct: 1434 AITIRQLYEFIKASWSKYMKAITEPGEAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVT 1493

Query: 940  QGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSR 999
             GVPRIKEIIN A +I TPII A+LE + + N A++VKG I KTLL +V   I+ + +  
Sbjct: 1494 LGVPRIKEIINAATKILTPIIEAKLENDSDFNYAQIVKGSIVKTLLNEVVSDIEELYSPN 1553

Query: 1000 LASIVIALDMETIQDAHLCINADIVKESIVQ---TPKIKLKQQHIKVLDFRKLEIF---- 1052
               I I L+ ETI+  +L INA  V++SIV      KIKLK + I+VLD  KL I     
Sbjct: 1554 GVFININLNEETIKGHYLDINAYTVRDSIVSHGPISKIKLKLEDIQVLDLWKLSILIGGG 1613

Query: 1053 --------------PPVDKSK--------IHFELYSLKNVLPMVIVKGIKTVERVVIAEK 1090
                            V+ S         ++F+   LK  L  V+V GI  ++R VI + 
Sbjct: 1614 ISQIGSSSNNINGTGTVNASNTGMGNTMNVYFQTQLLKKGLQNVVVSGIPGIKRSVIRQD 1673

Query: 1091 EKEKRKVKENGEKKK-YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARIC 1149
            +KE       GEK+K Y L VEG GL  +MG  GI G  T SNH+ EV++ LGIEAAR  
Sbjct: 1674 DKED---PITGEKRKCYSLAVEGYGLLKLMGINGIIGTTTVSNHVMEVREVLGIEAARKV 1730

Query: 1150 IIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTAD 1209
            II E+ + M A+ M ID RH+ LLAD+MTFRG+VLGI+RFGIQKM  S LMLASFE+T +
Sbjct: 1731 IIQEVQKCMDAYSMDIDLRHIQLLADIMTFRGDVLGISRFGIQKMRTSTLMLASFEETNE 1790

Query: 1210 HLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            HLF A+   R D + GVSEC+IMG P+ +GTG   I
Sbjct: 1791 HLFEAAFQNRVDPVFGVSECVIMGKPIKIGTGSFDI 1826


>gi|315425378|dbj|BAJ47044.1| DNA-directed RNA polymerase subunit A [Candidatus Caldiarchaeum
            subterraneum]
 gi|315426559|dbj|BAJ48189.1| DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum
            subterraneum]
 gi|343485295|dbj|BAJ50949.1| DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum
            subterraneum]
          Length = 1254

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1252 (34%), Positives = 686/1252 (54%), Gaps = 134/1252 (10%)

Query: 5    KMEALRKTDL-MKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQ 63
            ++E LR  +L  K+++ K    A     CP CG                    K  +   
Sbjct: 118  ELERLRANNLPFKNLIYKIKQKAMNTQVCPHCG-------------------EKQLKLEL 158

Query: 64   EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNI 120
            E  ++ +   ES       +  LNP  V    +R+ D D  +L +   + RPE +++T +
Sbjct: 159  EKPTSFSEMSES------GSTKLNPSTVRARLERIPDADLVLLDINPQTSRPEWMVLTVL 212

Query: 121  AVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
             VPP+ +RPS+ ++    +E+D+T +L  I++    L++ +   + +       + LQ  
Sbjct: 213  PVPPVYVRPSITLESGYRSEDDLTHKLVDILRVTQRLRENIRAGSPSPVIEELSDLLQYH 272

Query: 181  VAQYINSDVRGV-PFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
            V  Y N++  GV P   +  R L    QRLKGK+GRFR NLSGKRV+++ RTVISPDPN+
Sbjct: 273  VTTYFNNEAVGVVPAKHRSGRILKTLAQRLKGKEGRFRLNLSGKRVDFSARTVISPDPNI 332

Query: 240  KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGT-ARVLYGK 298
            +I EV +P+ +A  LT  ERV+  N+EK+R  ++NG DKYPGAR I  PDG   R+ +  
Sbjct: 333  RINEVGVPLEIAMQLTVAERVTPWNLEKMRTLVRNGSDKYPGARYIIRPDGKRVRLKFVA 392

Query: 299  FRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNP 358
               +LA  L+ G +V+RHL+DGD+VLFNRQPSLHRMSIM H  R++P++TLR N +VC P
Sbjct: 393  NLEELATALEPGYVVERHLQDGDIVLFNRQPSLHRMSIMAHYVRVLPYKTLRLNPAVCTP 452

Query: 359  YNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK 418
            YNADFDGDEMN+HVPQ+EEA+TEA  L+ V+NN+ +P+ G  ++   +DFLTS +L+TR 
Sbjct: 453  YNADFDGDEMNLHVPQSEEAQTEARELLVVENNIISPRYGAPIIGVIRDFLTSLYLLTRD 512

Query: 419  DTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLT 478
            +T   ++  +++   +     R  +P PA+  P  +WTGKQ+FS+L+    N        
Sbjct: 513  ETKLTKSELAMLLAAI---KYRGPIPPPAVKDPEPMWTGKQVFSLLLPKDFNH------- 562

Query: 479  VKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL 538
            V + +++N    TE                V  +N +LISG + K ++G    + +   L
Sbjct: 563  VTKSSFTN----TE----------------VVVKNGQLISGVIDKGSVGVEKANSILHRL 602

Query: 539  LRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVK 598
             RDYG+      ++ + +L+  +I   GFS  +DD+    ++     ++  ++    +  
Sbjct: 603  ARDYGSDVARQFLDNVVRLANTFIELKGFSFAVDDLYVPDQIHSDIQQIFKKSETEFSKL 662

Query: 599  IKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKG 658
            + +Y  G++++ PG  A Q  EA +  IL+  R+ AGK     +   +S  IM++ G++G
Sbjct: 663  LAQYQTGEVEIPPGMTAEQAFEADVLKILSEARDSAGKLIRARVSQNSSAFIMAKTGARG 722

Query: 659  SPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEF 718
            + +N+ QM+A VGQQSV   R   G+  R L  F +    P A+GFV NSF SGL   EF
Sbjct: 723  TMLNLDQMIAVVGQQSVRRERVHRGYRKRVLSFFKQDDLSPRARGFVYNSFVSGLDPLEF 782

Query: 719  FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAG-GCIVQFLYGDDG 777
            FFH +GGR+GLVDTAV+T  +GYM RRLI ALE L I YD +VR A  G I+QF YG+DG
Sbjct: 783  FFHAVGGRDGLVDTAVRTQQSGYMQRRLINALEALYIDYDGTVRTADEGRIIQFAYGEDG 842

Query: 778  MDPANME-GKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLA-AYGKESCSE 835
            +DPA  + GK+                             VS IV   LA AY  +  S+
Sbjct: 843  VDPAKSDHGKA---------------------------VTVSNIVNSVLASAYSGKPASQ 875

Query: 836  AFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFS 895
             ++    +  +   DKL+KKI  +E+         L     KT+   E  ++  ++   S
Sbjct: 876  EYIE---QKLQQASDKLNKKI--IEE---------LRAELRKTNPPAEA-VDKIVEEVVS 920

Query: 896  RYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRI 955
            +Y     E G A+G + AQSIGEPGTQ+TL+TFHFAGV   +I +G+PR+ EI++  +  
Sbjct: 921  KYNASLAEPGDAVGVVTAQSIGEPGTQLTLRTFHFAGVGEQSILKGLPRLIEIVDARRTP 980

Query: 956  STPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            +TPI+   L  E   N   AR +  +I+ T LG +    ++++  +  ++ + LD ++++
Sbjct: 981  TTPIMYIPLTPEYASNLAKARKLAKQIQHTTLGDLIS--EVLVNYKRGTLEVQLDAKSLE 1038

Query: 1014 DAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPM 1073
            + H     DI K       +   +++ I V    KL+    +D +++   + S+K     
Sbjct: 1039 E-HGVTKRDIEKALKGVGAEYDEEKRVISV----KLDEEGLMDIARVRERISSIK----- 1088

Query: 1074 VIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNH 1133
              VKGI+ +++  + +            EK +Y +  EG+ L+ VM   G+D  + K+N 
Sbjct: 1089 --VKGIRRIKKATVFK------------EKDEYVIRTEGSNLREVMEVPGVDWRRIKTND 1134

Query: 1134 IFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQK 1193
            I+E+ +  GIEAAR  I++E    ++  G+ +D RH++LLAD+MT  G V  I R G+ K
Sbjct: 1135 IYEIAEVFGIEAARNAIVEEAKAVLEDQGLDVDIRHLLLLADMMTVSGSVKQIGRHGVVK 1194

Query: 1194 MDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            +  SVL  A++E +   L  A+  G  D ++G  E I++G  + +GTG++ +
Sbjct: 1195 LKSSVLARAAYEISVQTLLEAAARGEVDSLKGNVERILIGREIQVGTGMVTL 1246


>gi|308161109|gb|EFO63568.1| DNA-directed RNA polymerase subunit A' [Giardia lamblia P15]
          Length = 1741

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1014 (41%), Positives = 581/1014 (57%), Gaps = 84/1014 (8%)

Query: 300  RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
            R  +A  L+   IV RHL   D +LFNRQPSLHRMSIM   A I   RT  FN  VC+P+
Sbjct: 660  RQAIANSLRPNDIVYRHLLPNDTLLFNRQPSLHRMSIMQFNAVIHENRTFSFNPVVCSPF 719

Query: 360  NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
            NADFDGDEMN+   Q +EAR EA +LMG   N+ +P++GE ++  TQDFLT  +L++ K 
Sbjct: 720  NADFDGDEMNIFYMQGQEARAEAGILMGSHENIISPRHGECMIGLTQDFLTGIYLLSGKG 779

Query: 420  TFYDRAAFSLMCCYMGDGM---------------------DR----------VDLPT--- 445
             F  R  +     Y  DG                      DR          V +P    
Sbjct: 780  IFMTRQDYCQHVSYGCDGFGDATYGVSLYNYGREFIKSIHDRRGTEEDTVGFVKVPCLSQ 839

Query: 446  PAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 505
            P I+ P +L++GKQ+ SVL++ +    V +NL   +KTY     R           +  N
Sbjct: 840  PCIVYPRQLYSGKQVLSVLMKGNDFDSVNINLEHGDKTYKKDSNR---------RALSIN 890

Query: 506  DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
            D ++  +NSE + G+L K  L + +K+ ++  L+++YG  + +  M R AK++AR++ N+
Sbjct: 891  DDYIIIQNSEHLVGRLTKTFLAS-SKNCIFYFLVQNYGPVSAARIMLRFAKVAARFLMNY 949

Query: 566  GFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITD 625
            GF+IGIDDV P + +  KK  ++ E YE    KI +Y  GKL+  PG    +TLEA +  
Sbjct: 950  GFTIGIDDVMPSQRVLSKKEIIVQEGYERAQEKIHDYESGKLEAIPGSTVQETLEATLNQ 1009

Query: 626  ILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFI 685
            IL+ +RE   +  +  L + N PLIMS CGSKGSPINI+QM+  +GQQS GG RAP+ F 
Sbjct: 1010 ILSNVRESCAQIALKELHFTNKPLIMSLCGSKGSPINIAQMIIILGQQSFGGSRAPDDFY 1069

Query: 686  DRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRR 745
             RS P+F   +KEP AKGF+ NSFY+GL   EF  H   GR+G++D+A KTADTGY+ RR
Sbjct: 1070 TRSAPYFYHYSKEPNAKGFILNSFYTGLLPFEFLAHARAGRDGVIDSACKTADTGYLQRR 1129

Query: 746  LIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV----- 800
            L+K LEDLS+ YD +VRN+   +VQF +G DG DP  +E  +G+ L+ D LL  +     
Sbjct: 1130 LVKCLEDLSVSYDFTVRNSKKSVVQFRFGHDGFDPIKLEVGTGQCLDLDTLLRHIILLNR 1189

Query: 801  -----KATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKK 855
                 +   P    RY +  ++  ++ K    YG+E+CS    N +  F +    KL   
Sbjct: 1190 SQDLAEGVFPILLDRYKAEAELEILLNKDF--YGQEACSIERNNVVSYFQQSILPKLTAN 1247

Query: 856  IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQS 915
                 DI     +  L+      + +T K ++ F++    +Y    +E G+  GA+ AQS
Sbjct: 1248 THITTDIAPALAASFLQ------TTLTRKDIDDFLRQVRRKYIRLNLEPGSPCGAVAAQS 1301

Query: 916  IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECN-DNE---- 970
            +GEP TQMTLK+FH AG+ASMNITQGVPR+KEI++G  +ISTPI T EL  + D E    
Sbjct: 1302 VGEPSTQMTLKSFHHAGLASMNITQGVPRLKEIVDGVVKISTPITTVELHVDVDKEEMAT 1361

Query: 971  -------NAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLC--INA 1021
                     AR++K  IE T LGQ++ SI    +  +  I + LDM+ I D  L   I  
Sbjct: 1362 MVTEKYLEKARMMKNIIECTYLGQISASIIECYSQSVCHIEVNLDMKIIADMGLAGIITV 1421

Query: 1022 DIVKESIVQTPKIKL---KQQHIKVLDFRKLEIFP--PVDKSK--IHFELYSLKNVLPMV 1074
            + V  SI+   K K    + Q    +       F   P+ +S+  + F++ SLK +LP++
Sbjct: 1422 ETVVASILHNDKAKKLVGQDQSSGSVSIHSATRFSVRPLTQSRDDLLFDIQSLKLLLPVI 1481

Query: 1075 IVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHI 1134
             + GI T  R VI E ++  +    +    KY LLVEGTGLQ+++   GID  +T SN+I
Sbjct: 1482 PISGIPTCNRAVINEYKEFCQGTTNSAPLTKYNLLVEGTGLQSILNVSGIDFTRTLSNNI 1541

Query: 1135 FEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKM 1194
             EV  TLGIEAA   I +EI   M +HGM++D RH+ LLAD+M FRG VLG TRFG+ KM
Sbjct: 1542 VEVANTLGIEAAVATIANEIKACMDSHGMAVDMRHIRLLADIMCFRGRVLGFTRFGLTKM 1601

Query: 1195 D-KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQ 1247
               SV+MLASFEKT +HLFNA++  + D   GV+E II+G PM +GTG   + Q
Sbjct: 1602 KADSVIMLASFEKTGEHLFNAALGNKVDEANGVTESIILGKPMSMGTGSFSLLQ 1655



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/235 (36%), Positives = 133/235 (56%), Gaps = 14/235 (5%)

Query: 111 RPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQELVE-ANSAF 168
           +P+ +I+T+I VPP  +RPSV    G+ + E+++T  L RI+  N  L++ +   A +  
Sbjct: 302 KPQDVILTHIPVPPSCLRPSVQSGSGAGTTEDNLTSHLVRILTINDKLKEAMASGAVATS 361

Query: 169 KSLAGWETLQVEVAQ-YINSDVRGV-PFSMQV---ARPLSGFVQRLKGKQGRFRGNLSGK 223
           K  A W+ L ++++  YI     GV P   +     +  +G + RLKGK GRFR NLSGK
Sbjct: 362 KVYAKWDQLNMDISLLYIGKIPGGVQPVKSKTDSGTKEGTGIIDRLKGKAGRFRSNLSGK 421

Query: 224 RVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR 283
           RV ++GRTVISP+P L + +VAIP  +A+ LT+PE V+  NI  LR+ I NG   YPGA 
Sbjct: 422 RVNFSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNG-KTYPGAN 480

Query: 284 MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMC 338
            +   + T R  Y     +L +++K      R +E   + L +R      ++ +C
Sbjct: 481 EVLLLNDTIR--YNPALKRLGIDMKQS----RDMEAKAMELVSRCVDTFNLNSLC 529


>gi|159118719|ref|XP_001709578.1| DNA-directed RNA polymerase subunit A' [Giardia lamblia ATCC 50803]
 gi|133352|sp|P25202.1|RPC1_GIALA RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
            polymerase III subunit C1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit; AltName: Full=RNA
            polymerase III subunit C160
 gi|9364|emb|CAA42895.1| subunit A of DNA dependent RNA polymerase III [Giardia intestinalis]
 gi|157437695|gb|EDO81904.1| DNA-directed RNA polymerase subunit A [Giardia lamblia ATCC 50803]
          Length = 1741

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1014 (40%), Positives = 580/1014 (57%), Gaps = 84/1014 (8%)

Query: 300  RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
            R  +A  L+   IV RHL   D +LFNRQPSLHRMSIM   A I   RT  FN  VC+P+
Sbjct: 660  RQAIANSLRPNDIVYRHLLPNDTLLFNRQPSLHRMSIMQFNAVIHENRTFSFNPVVCSPF 719

Query: 360  NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
            NADFDGDEMN+   Q +EAR EA +LMG   N+ +P++GE ++  TQDFLT  +L++ K 
Sbjct: 720  NADFDGDEMNIFYMQGQEARAEAGILMGSHENIISPRHGECMIGLTQDFLTGIYLLSGKG 779

Query: 420  TFYDRAAFSLMCCYMGDGM---------------------DR----------VDLPT--- 445
             F  R  +     Y  DG                      DR          V +P    
Sbjct: 780  IFMTRQEYCQHVSYGCDGFGDATYGVSLYNYGREFIKSIHDRRGTEEDTVGFVKVPCLSQ 839

Query: 446  PAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 505
            P I+ P +L++GKQ+ SVL++ +    V +NL   +KTY       + D + R   +  N
Sbjct: 840  PCIVYPRQLYSGKQVLSVLMKGNDFDSVNINLEHGDKTY-------KKDSDRR--ALSVN 890

Query: 506  DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
            D ++  +NSE + G+L K  L + +K+ ++  L+++YG  + +  M R AK++AR++ N+
Sbjct: 891  DDYIIIQNSEHLVGRLTKTFLAS-SKNCIFYFLVQNYGPVSAARIMLRFAKVAARFLMNY 949

Query: 566  GFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITD 625
            GF+IGIDDV P + +  KK  ++ E YE    KI++Y  GKL+  PG    +TLEA +  
Sbjct: 950  GFTIGIDDVMPSQRVLGKKEVIVQEGYEKAQEKIRDYESGKLEAIPGSTVQETLEATLNQ 1009

Query: 626  ILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFI 685
            IL+ +RE   +  +  L + N PLIMS CGSKGSPINI+QM+  +GQQS GG RAP+ F 
Sbjct: 1010 ILSNVRESCAQIALKELHFTNKPLIMSLCGSKGSPINIAQMIIILGQQSFGGSRAPDDFY 1069

Query: 686  DRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRR 745
             RS P+F   +KEP AKGF+ NSFY+GL   EF  H   GR+G++D+A KTADTGY+ RR
Sbjct: 1070 TRSTPYFYHYSKEPNAKGFILNSFYTGLLPFEFLAHARAGRDGVIDSACKTADTGYLQRR 1129

Query: 746  LIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV----- 800
            L+K LEDLS+ YD +VRN+   +VQF +G DG DP  +E  +G+  + D LL  +     
Sbjct: 1130 LVKCLEDLSVSYDFTVRNSKKSVVQFRFGHDGFDPIKLEVGTGQCFDLDTLLRHIILLNR 1189

Query: 801  -----KATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKK 855
                 +   P    RY +  ++  ++ K    YG+E+C     N    F +    KL   
Sbjct: 1190 SQDLAEGAFPVLLDRYKAEAELDVLLNKDF--YGQEACLIERSNVTSYFQQSILPKLTTN 1247

Query: 856  IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQS 915
                  +     +  L+      + +T+K ++ F++    +Y    +E G+  GA+ AQS
Sbjct: 1248 THIATTVAPALAASFLQ------TTLTKKDIDDFLRQVRRKYIRLNLEPGSPCGAVAAQS 1301

Query: 916  IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECN-DNE---- 970
            +GEP TQMTLK+FH AG+ASMNITQGVPR+KEI++G  +ISTPI T EL  + D E    
Sbjct: 1302 VGEPSTQMTLKSFHHAGLASMNITQGVPRLKEIVDGVVKISTPITTVELHVDVDKEELAA 1361

Query: 971  -------NAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLC--INA 1021
                     AR++K  IE T LGQ++ SI    +  +  I + LDM+ I D  L   I  
Sbjct: 1362 TVTEKYLEKARMMKNIIECTYLGQISASIIECYSQSVCHIEVNLDMKIIADMGLAGIITV 1421

Query: 1022 DIVKESIVQTPKIKL---KQQHIKVLDFRKLEIFP--PVDKSK--IHFELYSLKNVLPMV 1074
            + V  SI+   K K    + Q    +       F   P+ +S+  + F++ SLK +LPM+
Sbjct: 1422 ETVVASILHNDKAKKLVGQDQSSGSVSIHSATRFSVRPLTQSRDDLLFDIQSLKLLLPMI 1481

Query: 1075 IVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHI 1134
             V GI T  R VI E ++  +    +    KY LLVEG GLQ ++   GID  +T SN+I
Sbjct: 1482 PVSGISTCSRAVINEYKEFCQGATSSAPLTKYNLLVEGIGLQNILNVSGIDFTRTLSNNI 1541

Query: 1135 FEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKM 1194
             EV  TLGIEAA   I +EI   M +HGM++D RH+ LLAD+M FRG VLG TRFG+ KM
Sbjct: 1542 VEVANTLGIEAAVATISNEIKACMDSHGMAVDMRHIRLLADIMCFRGRVLGFTRFGLTKM 1601

Query: 1195 D-KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQ 1247
               SV+MLASFEKT +HLFNA++  + D   GV+E II+G PM +GTG   + Q
Sbjct: 1602 KADSVIMLASFEKTGEHLFNAALGNKVDEANGVTESIILGKPMSMGTGSFSLLQ 1655



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/235 (37%), Positives = 134/235 (57%), Gaps = 14/235 (5%)

Query: 111 RPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQELVE-ANSAF 168
           RP+ +I+T+I VPP  +RPSV    G+ + E+++T  L RI+  N  L++ +V  A +  
Sbjct: 302 RPQDVILTHIPVPPSCLRPSVQSGSGAGTTEDNLTSHLVRILTINDKLKEAMVSGAVATS 361

Query: 169 KSLAGWETLQVEVAQ-YINSDVRGV-PFSMQV---ARPLSGFVQRLKGKQGRFRGNLSGK 223
           K  A W+ L ++V+  YI     GV P   +     +  +G + RLKGK GRFR NLSGK
Sbjct: 362 KVYAKWDQLNMDVSLLYIGKIPGGVQPVKNKTDSGTKEGTGIIDRLKGKAGRFRSNLSGK 421

Query: 224 RVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR 283
           RV ++GRTVISP+P L + +VAIP  +A+ LT+PE V+  NI  LR+ I NG   YPGA 
Sbjct: 422 RVNFSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNG-KTYPGAN 480

Query: 284 MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMC 338
            +   + T R  Y     +L +++K      R +E   + L +R      ++ +C
Sbjct: 481 EVLLLNDTIR--YNPALKRLGIDVKQS----RDMEAKAMELVSRCVDTFNLNSLC 529


>gi|209881813|ref|XP_002142344.1| DNA-directed RNA polymerase III largest subunit [Cryptosporidium
           muris RN66]
 gi|209557950|gb|EEA07995.1| DNA-directed RNA polymerase III largest subunit, putative
           [Cryptosporidium muris RN66]
          Length = 1803

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/751 (48%), Positives = 499/751 (66%), Gaps = 20/751 (2%)

Query: 55  RSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEK 114
           R  +  +L +F   +TH  +S++   +    L P+ V  L +++   D ++L +  +P++
Sbjct: 189 RRLIRPTLDQFMK-LTHVVKSESHDYIED--LTPLFVQTLLQKVPYEDLDILEMF-KPDR 244

Query: 115 LIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGW 174
           L+++ + VPP  IRPSV M  + SNE+D+T  L  I   N  ++ ++       + L  W
Sbjct: 245 LLLSRLPVPPNCIRPSVTMGEAGSNEDDLTVILSEITDLNNMIKSQMKSGFQTLQLLGNW 304

Query: 175 ETLQVEVAQYINSDVRGVP---FSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRT 231
           E LQ++  + IN++  GV     S  + +   G  QRLKGK+GRFRGNLSGKRV+++GRT
Sbjct: 305 EFLQLQCTRLINAEAPGVNQLLASKNIPKAGRGICQRLKGKEGRFRGNLSGKRVDFSGRT 364

Query: 232 VISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGT 291
           VISPDPN+ + EV +P+ +ARI+TYPERV+ HNIE+LR  + NG + +PGA  +   +G+
Sbjct: 365 VISPDPNVAVDEVVVPVVIARIMTYPERVNSHNIERLRDAVLNGHNIWPGACYVYKTNGS 424

Query: 292 ARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRF 351
              L    R  ++  L+ G +V+RH+  GD VLFNRQPSLHR+SIM HR  +MPWRT RF
Sbjct: 425 KSSLRYANRRIVSERLEIGDVVERHMITGDSVLFNRQPSLHRLSIMSHRVVVMPWRTFRF 484

Query: 352 NESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTS 411
           NE  C PYNADFDGDEMN+H+PQ E AR EA  LMG+ +NL TP+NGE LVA+TQDFL  
Sbjct: 485 NECACAPYNADFDGDEMNLHMPQNELARAEAKYLMGLVHNLVTPRNGEPLVAATQDFLLG 544

Query: 412 SFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANM 471
            +L+T +D F  R  FS  CCY  DG   V+LP P+ILKP+ELWTGKQ+F+VLIRP+ + 
Sbjct: 545 IYLLTSRDVFLTRDQFSQYCCYFTDGCIPVELPPPSILKPIELWTGKQVFNVLIRPNPSE 604

Query: 472 R--VYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNG 529
           R  + VN  +KE+ Y  KL          ++ +CPN+GFV  R+SEL++G +GK  LG G
Sbjct: 605 RQHIIVNFELKERDYDTKL---------DLKDLCPNEGFVIVRHSELLAGAVGKKVLG-G 654

Query: 530 NKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLIS 589
           +K+GL+  +LR+     ++  M R+A+  +R++   G +IGIDDV P + L   K KL+ 
Sbjct: 655 SKEGLFFHILRENSNEKSAEVMGRVARFVSRYLAQKGMTIGIDDVTPNEGLLSAKSKLLE 714

Query: 590 ENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPL 649
           + Y     +I  +  GK+   PGC    TLE  +  IL+ IR DAGKA   SLP+ N PL
Sbjct: 715 DGYRKIQEEITTFELGKMIPHPGCTLEDTLEVKVKKILDEIRNDAGKASYSSLPFSNKPL 774

Query: 650 IMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSF 709
           +M   G+KG  INI+QMVACVGQQ+V G+R  NGF  R+LPHF     +  ++GFVANSF
Sbjct: 775 LMYLSGAKGQLINIAQMVACVGQQNVAGQRIQNGFTQRTLPHFKINCVDGRSRGFVANSF 834

Query: 710 YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIV 769
           +SGL   EFFFHTM GREGLVDTAVKTA+TGYM RRLIKALEDL ++YD +VR++ G I+
Sbjct: 835 FSGLQPDEFFFHTMSGREGLVDTAVKTAETGYMQRRLIKALEDLCVKYDQTVRSSDGQII 894

Query: 770 QFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           +F+YGDDG++P +ME K  + +NF+RL   V
Sbjct: 895 EFIYGDDGLNPMSMEDKL-KLVNFERLFKHV 924



 Score =  321 bits (823), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 190/395 (48%), Positives = 246/395 (62%), Gaps = 34/395 (8%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            IT + L  FI  C+ +Y    V+ G A+GAI AQSIGEPGTQMTLKTFHFAGVASMN+T 
Sbjct: 1386 ITVRHLYEFISLCWLKYMKAIVQPGDAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVTL 1445

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRL 1000
            GVPRIKEIIN A +I TPII A L+   +   A++VKG+I K LL +V   I+ V + + 
Sbjct: 1446 GVPRIKEIINAATKILTPIIQAPLKNPWDYKCAQMVKGKIVKYLLREVCTHIEEVYSPQG 1505

Query: 1001 ASIVIALDMETIQDAHLCINADIVKESIV---QTPKIKLKQQHIKVLDFRKLEIFPP--V 1055
              + I L  +TIQ+ +L INA  V++SI    Q  K++LK+  I++++   L ++PP  +
Sbjct: 1506 VCLNIYLCEKTIQNLYLDINAYTVRDSIYSHGQICKLRLKEGDIQIINQWTLAVYPPDTI 1565

Query: 1056 DKS-----------------------KIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEK 1092
            +K                         + F+L  LK  L  VIV GI  + R VI + E 
Sbjct: 1566 EKGSRSGSTSSNNNLSLTSGSGPSSLNVLFQLKILKRGLQNVIVSGISGIRRSVIRQDEV 1625

Query: 1093 EKRKVKENGEKK--KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICI 1150
                V  N  KK  KY L VEG GL A+MG  G+ G  T SNHI E ++ LGIEAAR  I
Sbjct: 1626 ----VDPNTGKKRHKYSLAVEGYGLSALMGISGLIGISTVSNHIIETKEVLGIEAARSVI 1681

Query: 1151 IDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADH 1210
              E+ + M A+ M ID RH+ LLAD+MTFRG+VLGI+RFGIQKM  S LMLASFE+T +H
Sbjct: 1682 AQEVLKCMDAYSMDIDLRHIQLLADVMTFRGDVLGISRFGIQKMRTSTLMLASFEETNEH 1741

Query: 1211 LFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            LF A+   R D ++GVSEC+IMG P+ +GTG   I
Sbjct: 1742 LFEAAFQNRIDPVDGVSECVIMGKPIKIGTGAFDI 1776


>gi|253747557|gb|EET02185.1| DNA-directed RNA polymerase subunit A' [Giardia intestinalis ATCC
            50581]
          Length = 1742

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1015 (40%), Positives = 581/1015 (57%), Gaps = 85/1015 (8%)

Query: 300  RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
            R  +A  L+   IV RHL   D +LFNRQPSLHRMSIM   A I   RT  FN  VC+P+
Sbjct: 660  RQAIANSLRPNDIVYRHLLPNDTLLFNRQPSLHRMSIMQFNAVIHENRTFSFNPIVCSPF 719

Query: 360  NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
            NADFDGDEMN+   Q +EAR EA +LMG   N+ +P++GE ++  TQDFLT  +L++ K 
Sbjct: 720  NADFDGDEMNIFYMQGQEARAEAGILMGSHENIISPRHGECMIGLTQDFLTGIYLLSGKG 779

Query: 420  TFYDRAAFSLMCCYMGDGM----------------------------DRVD------LPT 445
             F  R  +     Y  DG                             D V       L  
Sbjct: 780  IFMTRQDYCQHVSYGCDGFGDATYGVSLYNYGREFIKSIHSRRGTEEDTVGFVKVPCLAQ 839

Query: 446  PAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 505
            P I+ P +L++GKQ+ SVL++ +    V +NL   +KTY       + D++     +   
Sbjct: 840  PCIVYPRQLYSGKQVLSVLMKGNDFDSVSINLEHGDKTYK------KSDDK---RALSVG 890

Query: 506  DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
            D +V  +NSE ++G+L KA L + +K+ ++  L+++YG  + +  M R AK++AR++ N+
Sbjct: 891  DDYVVIQNSEHLAGRLTKAFLAS-SKNCIFYFLVQNYGPVSAARIMLRFAKVAARFLMNY 949

Query: 566  GFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITD 625
            GF+IGIDDV P +++  KK  ++ E YE    KI +Y  GKL   PG    +TLEA +  
Sbjct: 950  GFTIGIDDVMPSQQVLHKKELIVQEGYERAQEKIHDYESGKLHAIPGSTVQETLEAALNQ 1009

Query: 626  ILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFI 685
            IL+ +RE   +  +  L + N PLIMS CGSKGSPINI+QM+  +GQQS GG RAP+ F 
Sbjct: 1010 ILSNVRESCAQVALKELHFTNKPLIMSLCGSKGSPINIAQMIIILGQQSFGGSRAPDDFY 1069

Query: 686  DRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRR 745
             RS P+F   +KEP +KGF+ NSFY+GL   EF  H   GR+G++D+A KTADTGY+ RR
Sbjct: 1070 TRSAPYFYHYSKEPNSKGFILNSFYTGLLPFEFLAHARAGRDGVIDSACKTADTGYLQRR 1129

Query: 746  LIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV----K 801
            L+K LEDLS+ YD +VRN+   +VQF +G DG DP  +E  + + L+ D LL  +    +
Sbjct: 1130 LVKCLEDLSVSYDFTVRNSKKNVVQFRFGHDGFDPIKLEVGTAQCLDLDTLLRHIILLNR 1189

Query: 802  ATCPPAG------QRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKK 855
            +     G       RY +  ++  ++ K    YG+E+C     N +  F      K+   
Sbjct: 1190 SQDLAEGVPLVLLDRYKAEAELETLLNKDF--YGQEACQIERDNVISYFRSNILPKITAN 1247

Query: 856  IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQS 915
             +   +I     +  L+      + IT K ++ F++    +Y    +E G+  GA+ AQS
Sbjct: 1248 TRIAAEIAPALAASFLQ------TTITRKDIDDFLRQVRRKYIRLNLEPGSPCGAVAAQS 1301

Query: 916  IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNE----- 970
            +GEP TQMTLK+FH AG+ASMNITQGVPR+KEI++G  +ISTPI T EL  + +E     
Sbjct: 1302 VGEPSTQMTLKSFHHAGLASMNITQGVPRLKEIVDGVVKISTPITTVELHIDADEEEDPA 1361

Query: 971  -------NAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLC--INA 1021
                     AR++K  IE T LGQ++ SI    +     I + LDM+ I D  L   I  
Sbjct: 1362 IITEKYLEKARMMKNIIECTYLGQISASIIECYSQSSCHIEVNLDMKIIADMGLAGVITV 1421

Query: 1022 DIVKESIVQTPKIK--LKQQH----IKVLDFRKLEIFPPV-DKSKIHFELYSLKNVLPMV 1074
            + V  SI+   K K  + Q H    + +    +  + P    +  + F++ SLK +LPM+
Sbjct: 1422 ETVVASILHNDKAKKLVGQDHSSGSVSIHSGTRFSVRPITQSRENLLFDIQSLKLLLPMI 1481

Query: 1075 IVKGIKTVERVVIAE-KEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNH 1133
             V GI T  R VI E KE  +     +    KY LLVEG GLQ+++   GID  +T SN+
Sbjct: 1482 PVSGIATCSRAVINEYKEITQGGTISSAPLTKYNLLVEGVGLQSILNVSGIDFTRTLSNN 1541

Query: 1134 IFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQK 1193
            I EV  TLGIEAA   I +EI   M +HGM++D RH+ LLAD+M F+G+VLG TRFG+ K
Sbjct: 1542 IIEVANTLGIEAAVATIANEIKACMDSHGMAVDMRHIRLLADIMCFKGKVLGFTRFGLTK 1601

Query: 1194 MD-KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQ 1247
            M   SV+MLASFEKT +HLFNA++  + D   GV+E II+G PM +GTG   + Q
Sbjct: 1602 MKADSVIMLASFEKTGEHLFNAALGNKIDETNGVTESIILGKPMSMGTGSFSLLQ 1656



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 122/205 (59%), Gaps = 10/205 (4%)

Query: 111 RPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQELVE-ANSAF 168
           RP+ +I+T+I VPP  +RPSV    G+ + E+ +T  L RI+  N  L++ +   A +  
Sbjct: 302 RPQDVILTHIPVPPSCLRPSVQSGSGAGTTEDSLTSHLVRILTVNDKLKEAVTSGAVTTS 361

Query: 169 KSLAGWETLQVEVAQ-YINSDVRGV-PFSMQV---ARPLSGFVQRLKGKQGRFRGNLSGK 223
           K  A W+ L ++V+  YI     GV P   ++    +  +G + RLKGK GRFR NLSGK
Sbjct: 362 KVYAKWDQLNMDVSLLYIGKIPGGVQPVKGKIDSGTKEGTGIIDRLKGKAGRFRSNLSGK 421

Query: 224 RVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR 283
           RV ++GRTVISP+P L + +VAIP  +A+ LT+PE V+  NI  LR+ I NG   YPGA 
Sbjct: 422 RVNFSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNG-KTYPGAN 480

Query: 284 MIRYPDGTARVLYGKFRNQLAVELK 308
            +   + T R  Y     +L +++K
Sbjct: 481 EVLLLNDTIR--YNPALKRLGIDMK 503


>gi|429329501|gb|AFZ81260.1| DNA-directed RNA polymerase III C1 subunit, putative [Babesia equi]
          Length = 1548

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/839 (44%), Positives = 522/839 (62%), Gaps = 31/839 (3%)

Query: 7    EALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFA 66
            + L K  L + I+++C    +    C RCG   G VK+ V             +      
Sbjct: 210  DPLFKVSLFRKILQECKNKKT----CDRCGAPQGTVKRIV---------KPTLDQFMRMK 256

Query: 67   SAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIA 126
              + H +  K  V      LNP+ V  LF+ M     ++L ++  PEK+IITN+A+ P  
Sbjct: 257  HVVRHKESGK--VQARDEELNPIVVKHLFEAMDPAHVKLLNIAS-PEKMIITNLAISPNC 313

Query: 127  IRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYIN 186
            IRPSV M+G  S E+D+T     II+ N +L+++L +   + + +  W+ +Q+   + IN
Sbjct: 314  IRPSVPMEGQGSTEDDLTIITSDIIEVNKTLKKQLQDGQQSSRFILNWQFMQLHCTRLIN 373

Query: 187  SDVRGVP---FSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITE 243
            +D   V     +  + +P  G  QRLKGK+GRFRGNLSGKR +++ RTVISPDPN+ I E
Sbjct: 374  TDAPAVSQLLSTKNITKPGRGLCQRLKGKEGRFRGNLSGKRADFSSRTVISPDPNVGIDE 433

Query: 244  VAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQL 303
            + +P ++A  LT+PE V+  NIE LR+ + NG   +PGA  +   +G+   L     N +
Sbjct: 434  IVVPEQIATKLTFPEVVNAGNIEVLRKAVINGWSVWPGASYVIKANGSKTTLRIANPNHI 493

Query: 304  AVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADF 363
            A  L+ G IV+RHL DGD+V+FNRQPSLHRMSIM HR R+MP  T RFNE VC PYNADF
Sbjct: 494  ADNLEIGDIVERHLWDGDIVIFNRQPSLHRMSIMAHRVRVMPGSTFRFNECVCQPYNADF 553

Query: 364  DGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYD 423
            DGDEMNMH+PQT EAR E+L L+ V  NL TP+NG+ L+A+ QDFL++S+L+T KD F  
Sbjct: 554  DGDEMNMHLPQTYEARAESLYLLSVLQNLTTPRNGDPLIAAVQDFLSASYLLTSKDRFLT 613

Query: 424  RAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKT 483
            R  F  +CCY  +   +VD+P PAI+ P  LWTGKQ+F+VL+RP     V VN   +E+ 
Sbjct: 614  RKQFCQICCYFTNASIQVDIPPPAIIYPTMLWTGKQIFNVLLRPSRKSNVIVNFECRERE 673

Query: 484  YSN--KLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRD 541
            + N        G   +  + MCP DG+V F NSEL+ G LG  +LG  +K GL+  LL+ 
Sbjct: 674  FHNIKDYEHNYGMTNLH-QCMCPKDGYVIFYNSELMCGALGVKSLG-ASKGGLFYQLLKK 731

Query: 542  YGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKE 601
              +   + CM R++KL++RW+   G +IG+DDV+P  EL ++K +L+ + Y   +  IK 
Sbjct: 732  NSSKIAAECMLRVSKLASRWLAEFGMTIGLDDVRPGAELLNRKSELLMDGYSRVSEAIKN 791

Query: 602  YNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPI 661
            + +  LQ  PGC   +TLE  +  +L+ +R +AGK C   L   N PLIM   G+KG+ I
Sbjct: 792  FKD--LQAYPGCTREETLELQVKSVLDDLRNEAGKVCNAHLKNDNKPLIMFNSGAKGALI 849

Query: 662  NISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFH 721
            NI+QMVACVGQQ+V G+R  NGFI R+LPHF    ++  ++GFVANSF+SGL   EFFFH
Sbjct: 850  NIAQMVACVGQQNVSGQRIQNGFIGRTLPHFNIGCRDAKSRGFVANSFFSGLEPEEFFFH 909

Query: 722  TMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPA 781
            TM GREGL+DTAVKT++TGYM R+L+K +EDL+I YD++VR + G +VQFLYGDDG+  +
Sbjct: 910  TMSGREGLIDTAVKTSETGYMQRKLMKVMEDLAICYDHTVRASDGHVVQFLYGDDGLSAS 969

Query: 782  -NMEGKS--GEPLNFDRLLMKV-KATCPPAGQ-RYLSPQQVSEIVEK-QLAAYGKESCS 834
             NM  K+     L   R + ++ K     +G  + L PQ +S I+++  LA Y +   S
Sbjct: 970  LNMSDKNLLENVLQHIRCITRIPKLVANDSGSFQILPPQDLSAILKRVDLAVYDQSLVS 1028



 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 179/377 (47%), Positives = 243/377 (64%), Gaps = 12/377 (3%)

Query: 868  SQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKT 927
            SQ   +   K   I+ +Q+  FI+ C+  Y+    E G AIGA+GAQSIGEP TQMTLKT
Sbjct: 1172 SQFRAKRISKHLWISLEQIFQFIRYCWKDYQKGVCEPGEAIGALGAQSIGEPATQMTLKT 1231

Query: 928  FHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQ 987
            FHFAGVASMN+T GVPRI+EIIN +  I TPII   L    + + A  VK RIEKT LGQ
Sbjct: 1232 FHFAGVASMNVTLGVPRIQEIINASASIITPIIEVPLVNKHDYDYALSVKARIEKTTLGQ 1291

Query: 988  VAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQ---TPKIKLKQQHIKVL 1044
            +   I+ + T     ++I L+   IQD  L ++A  V++ I++     KIK+ +Q +  L
Sbjct: 1292 ICSDIRELFTPNGIRLIIKLNANVIQDLFLQVDAYRVRDKILEQGSIKKIKINKQDVHTL 1351

Query: 1045 DFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKK 1104
            D  +L +  P  ++++ F+ ++L N L  ++V G K ++R +I      KR+   +G   
Sbjct: 1352 DKWQLYLDLPATETQL-FQQHALINGLLDLVVAGGKRIKRAII------KRENTASG--C 1402

Query: 1105 KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMS 1164
            +Y++ VEG GLQ VMGA G+     K+NHI+EV Q LGIEAAR  II EI + M A+ + 
Sbjct: 1403 QYQIAVEGYGLQEVMGAYGVQSNAVKTNHIYEVAQVLGIEAARSTIISEIQKCMDAYSID 1462

Query: 1165 IDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIE 1224
            ID R+M LL D+MT RGEV+GI R GI+K   S LMLASFE+T +HLF A+V+ R D ++
Sbjct: 1463 IDGRYMKLLGDIMTSRGEVIGINRHGIKKRRTSALMLASFEETNEHLFEAAVHSRKDPVK 1522

Query: 1225 GVSECIIMGIPMPLGTG 1241
            GVSECII+G  MPLGTG
Sbjct: 1523 GVSECIIVGKQMPLGTG 1539


>gi|407464207|ref|YP_006775089.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
            Nitrosopumilus sp. AR2]
 gi|407047395|gb|AFS82147.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
            Nitrosopumilus sp. AR2]
          Length = 1263

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1174 (35%), Positives = 662/1174 (56%), Gaps = 100/1174 (8%)

Query: 81   VATYILNPVNVLFLFKRMTDTDCEVLY---LSERPEKLIITNIAVPPIAIRPSVIMDGSQ 137
            +  + L P+ +   F ++ D D E+L    ++ RPE  I+  + VPP+ +RPS+I++   
Sbjct: 173  IGEHRLLPITIRERFSQILDEDLELLSYDPITARPEWFILQALPVPPVTVRPSIILETGI 232

Query: 138  SNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ 197
             +E+D+T ++  II+ N  L++               + LQ     Y +++V G+P +  
Sbjct: 233  RSEDDLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHSTTYFDNEVSGIPQAHH 292

Query: 198  -VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTY 256
               RPL    QRLKGK+GRFRG+LSGKRV+++ RTVISPDPNL ++EV +P ++A  LT 
Sbjct: 293  RSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLDLSEVGVPEQVAMKLTI 352

Query: 257  PERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA-RVLYGKFRNQLAVELKSGCIVDR 315
            PE V++ NIE++R+ + NGP+K+PG   I  PDG   R+ + + R+ +A  L+ G +++R
Sbjct: 353  PEIVTEWNIERMRKLVINGPEKFPGVNYIVRPDGVKIRLDFVEDRSTIAETLEIGYLIER 412

Query: 316  HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
            HL DGD+V+FNRQPSLH+MSIM H  R++P +T R + SVC PYNADFDGDEMN+HVPQ+
Sbjct: 413  HLADGDIVMFNRQPSLHQMSIMAHYVRVLPGKTFRLHPSVCPPYNADFDGDEMNLHVPQS 472

Query: 376  EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
            EEAR EA+LLM VQ+ L +P+ G  ++ + +DF+T ++L+T+ DT      FS    Y  
Sbjct: 473  EEARAEAILLMRVQDQLISPRYGGPIIGALRDFVTGAYLLTKDDTTLSVQEFS---NYAM 529

Query: 436  DGMDRVDLPTPAI-LKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
             G     LP PA   K    +TGKQLFS+ +    N   YV LT K   +S      E D
Sbjct: 530  LGGYTEPLPKPATKTKDGPAYTGKQLFSLFLPKDFN---YV-LTSK---WSKGTKGPEKD 582

Query: 495  EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                          V  +N ELISG + K ++G    + +   + +DYG       +N +
Sbjct: 583  --------------VVIKNGELISGVIDKTSIGAEEPESVLHRITKDYGNAVGKNFLNSI 628

Query: 555  AKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
              +  ++I ++GFS G  D++  ++   +    I E Y+V      +YN+G L+L  G  
Sbjct: 629  LIMVKQFITHYGFSYGYGDLEVPEKNVQQILDDIQETYDVVADLTDQYNKGTLKLTRGMK 688

Query: 615  AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
            A + LEA I + L + RE AG     SL   N+  IM+  G++GS +N+ QM   +GQQS
Sbjct: 689  AEEALEAYIVNELGKAREKAGATANDSLDDSNAGKIMATTGARGSALNVGQMAGALGQQS 748

Query: 675  VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
              G R  +G+ +R+L H+      P A GFV +++ +GL+A EFFFH MGGREGLVDTAV
Sbjct: 749  RRGNRMNDGYSNRALTHYQEHDSNPDAHGFVKSNYRTGLTALEFFFHAMGGREGLVDTAV 808

Query: 735  KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFD 794
            +T  +GYM RRLI ALE + ++YD +VR+  G IVQFLYG+DG+D    +   GE  N  
Sbjct: 809  RTQQSGYMQRRLINALEHIRLEYDGTVRDPHGHIVQFLYGEDGIDV--QKSDHGEAFNAS 866

Query: 795  RLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDK 854
            RL                                   + S+  ++S +K  + + D L K
Sbjct: 867  RL-----------------------------------AESQTIIDSGKKATKDEIDTLAK 891

Query: 855  KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQ 914
            K     +      ++++ +  HK S +++  +E   +   S Y   +VE G A+G I AQ
Sbjct: 892  KYTKTFNPRL---TELVTDALHK-SNLSKDGVEAVCKKGLSLYNNAQVEPGQAVGIITAQ 947

Query: 915  SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAAR 974
            SIGEPGTQMTL+TFHFAG+   N+T G+PR+ E+++  K+  TP  T ++  ++    +R
Sbjct: 948  SIGEPGTQMTLRTFHFAGIKERNVTLGLPRLIELVDARKKPVTP--TMDIYLDEESKKSR 1005

Query: 975  VVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKE---SIVQT 1031
                  EK +  +VA++   V+ +++++++   + +   +  L ++ + +KE   SI + 
Sbjct: 1006 ------EKAI--EVARN---VLQTKVSALIANTETDYSTNIQLILSPNRLKERGCSIAEV 1054

Query: 1032 PKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKE 1091
                   +  K+    +L     VD++     + +++N +    VKG+  +ERV + +K+
Sbjct: 1055 EAALSSNKKFKLETTGELITLNLVDEADTATAI-AIRNKVLNTTVKGVPDIERVTLVQKD 1113

Query: 1092 KEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICII 1151
             E            + +   G+ +  V+  +GID    ++N++FE+  TLGIEAAR  +I
Sbjct: 1114 DE------------WVIQTTGSNIAKVLEVKGIDKKNVRTNNVFEIAGTLGIEAARNSLI 1161

Query: 1152 DEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHL 1211
            DE+N T+   G+ +D R++ML++DLM  RG +  I R GI     SVL  A+FE T   +
Sbjct: 1162 DELNHTLGDQGLEVDNRYIMLVSDLMCSRGYMQQIGRHGIAGTKDSVLARAAFEITVPTI 1221

Query: 1212 FNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             +A++ G  ++++G++E +I+G  +P+G+G + +
Sbjct: 1222 AHAALGGEVEQLKGITENVIVGSNIPIGSGTVDL 1255


>gi|71029280|ref|XP_764283.1| DNA-directed RNA polymerase III largest subunit [Theileria parva
           strain Muguga]
 gi|68351237|gb|EAN32000.1| DNA-directed RNA polymerase III largest subunit, putative
           [Theileria parva]
          Length = 1617

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/797 (45%), Positives = 503/797 (63%), Gaps = 47/797 (5%)

Query: 14  LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTK 73
           + K+IV+ C  ++    KCPRC    G++KK V  +     + K     +E+    T  +
Sbjct: 213 IFKNIVQDCKKIS----KCPRCEAPQGVIKKIVKPIIDQFMKLKHIYKYKEYGKMKTVEE 268

Query: 74  ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIM 133
           E           LNP+ V  LF+ +     +VL +   PEKLII+N+A PP  IRPSV +
Sbjct: 269 E-----------LNPLVVKHLFENIDPVHSKVLNIV-HPEKLIISNLAAPPNCIRPSVSV 316

Query: 134 DGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVP 193
               + E+D+T     I+++N  L+  +         +  W+ +Q +  ++INSD   + 
Sbjct: 317 GEEGTTEDDLTCIFSDIVESNNQLKSYIKNGAQTNSFIVHWQIIQYQCTRFINSDSPALA 376

Query: 194 ---FSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRM 250
               S +V++P  G  QRLKGK+GRFRGNLSGKRV+++ RTVISPDPN+ I EV +P  +
Sbjct: 377 QLLLSRRVSKPGRGIFQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNVGIDEVVVPEWI 436

Query: 251 ARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSG 310
           AR LT+PERV+ +NI+ L++ I NG   +PGA  +   DG+   L       ++  L+ G
Sbjct: 437 ARRLTFPERVTKYNIDVLKKAILNGVSVWPGASYVNKLDGSKCSLRFANPKHMSENLQVG 496

Query: 311 CIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNM 370
            IV+RHL +GD+V+FNRQPSLHR+SIMCHRAR+M   T RFNE VC PYNADFDGDEMN+
Sbjct: 497 DIVERHLWNGDIVIFNRQPSLHRLSIMCHRARVMNGSTFRFNECVCLPYNADFDGDEMNL 556

Query: 371 HVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLM 430
           H+PQT EAR EAL L+ V  NL TP+NGE L+A  QDFL +S+L+T KD F +RA FS +
Sbjct: 557 HLPQTYEARAEALHLLSVLKNLTTPRNGEPLIAPVQDFLCASYLLTNKDMFLNRAEFSQI 616

Query: 431 CCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSN---- 486
             Y  DG   +DLP P+I+ PV LWTGKQ+FSVLI+P+   +V VN+ V+E+ Y++    
Sbjct: 617 ISYFTDGTIHIDLPPPSIIHPVTLWTGKQVFSVLIKPNNKSKVMVNIRVREREYTDPKQY 676

Query: 487 -KLIRTEGDEEIRI--------------------ETMCPNDGFVYFRNSELISGQLGKAT 525
            + +  +G E+ ++                    + MCP+DG+V    SEL+ G LG  +
Sbjct: 677 YENLNKKGSEDSKVNKKSGNPSNDTNPRSFIKLDDCMCPSDGYVVIYKSELMCGSLGVRS 736

Query: 526 LGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKG 585
           LG  +K GL+  L+       +S CM R++KLS+RW+   G +IG+DDV P +EL DKK 
Sbjct: 737 LG-ASKGGLFYELMLKNSPKISSECMLRVSKLSSRWLSEFGMTIGLDDVTPSRELIDKKK 795

Query: 586 KLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR 645
           +L+ + Y   +  I  +    LQ  PGC   QTLE  +  IL+ +R ++GK C   L   
Sbjct: 796 QLLLDGYSRVDEAISNFK--FLQPYPGCTREQTLELQVKSILDELRNESGKICTSLLNPD 853

Query: 646 NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFV 705
           N PLIM   G+KG+ INI+QMVACVGQQ+V G+R  NGFI R+LPHF    K+  ++GFV
Sbjct: 854 NKPLIMFNSGAKGALINIAQMVACVGQQNVSGQRIQNGFIGRTLPHFTMGCKDAKSRGFV 913

Query: 706 ANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAG 765
           ANSF++GL   EFFFHTM GREGL+DTAVKT++TGYM RRL+K +EDLS+ YD SVR + 
Sbjct: 914 ANSFFTGLEPEEFFFHTMSGREGLIDTAVKTSETGYMQRRLMKVMEDLSVCYDYSVRTSD 973

Query: 766 GCIVQFLYGDDGMDPAN 782
           G IVQFLYGDDG+  ++
Sbjct: 974 GQIVQFLYGDDGLSSSS 990



 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 178/367 (48%), Positives = 238/367 (64%), Gaps = 10/367 (2%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            I+ +Q+  FI+  +  Y+    E G AIGA+G+QSIGEP TQMTLKTFHFAGVASMN+T 
Sbjct: 1255 ISLEQMFEFIRYSWKDYQKSLCEPGEAIGALGSQSIGEPATQMTLKTFHFAGVASMNVTL 1314

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRL 1000
            GVPRI+EIIN    I+TPII   LE N + + A  VK +IEKT LGQ+  +IK + T ++
Sbjct: 1315 GVPRIQEIINATSLIATPIIEVPLEDNTDYDFALKVKSKIEKTTLGQICLNIKQLYTPQM 1374

Query: 1001 ASIVIALDMETIQDAHLCINADIVKESIVQTPKI-KLKQQHIKVLDFRKLEIFPPVDKSK 1059
            + ++  L+ + I+  H+ +NAD V++ I+ +  + K+K     V    K +I   +  ++
Sbjct: 1375 SKLLFTLNRDLIEQLHIQVNADKVRDIIIDSGCLGKVKIHKSCVYSIGKWQICIELPSNQ 1434

Query: 1060 IHF-ELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
             HF +  SL + L  ++V G K+V+R VI      KR+    G    Y++ VEG GLQ V
Sbjct: 1435 QHFFQQNSLISGLTQLVVAGSKSVKRAVI------KRESTPQG--PNYQIAVEGYGLQEV 1486

Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
            MG  G+     KSNH+ EV + LGIEAAR  II EI   M A+ + ID R+M LL D+MT
Sbjct: 1487 MGCYGVMSSAVKSNHVAEVAKVLGIEAARSVIISEIQRCMDAYSIDIDCRYMKLLGDVMT 1546

Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
            FRGEV+GI RFGIQKM  S LMLASFE+T DHL  A+++ R D I+GVSECIIMG P+ L
Sbjct: 1547 FRGEVVGINRFGIQKMRSSALMLASFEETNDHLLEAALHHRRDPIKGVSECIIMGKPISL 1606

Query: 1239 GTGILKI 1245
            GTG   I
Sbjct: 1607 GTGSFDI 1613


>gi|157875469|ref|XP_001686126.1| putative DNA-directed RNA polymerase III largest subunit
           [Leishmania major strain Friedlin]
 gi|68129200|emb|CAJ07737.1| putative DNA-directed RNA polymerase III largest subunit
           [Leishmania major strain Friedlin]
          Length = 1582

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/848 (43%), Positives = 531/848 (62%), Gaps = 40/848 (4%)

Query: 17  SIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKV------------TESLQE 64
           +I+K     A K   C  CG +NG V++ V  + I+H++  V            T   QE
Sbjct: 141 AIIKGIQEDAYKTRVCLMCGGLNGTVRR-VRPMRIVHEKYLVDLRRGEQANEDPTAFFQE 199

Query: 65  -FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS--ERPEKLIITNIA 121
              SA+ H  E  A        L+P  V  LF+ +      +L L     P  L+I+ + 
Sbjct: 200 ELRSAVMHNSEVGAHKEFVHEFLHPQRVKKLFEAIPQEQVPLLGLQPGTSPCSLLISTLL 259

Query: 122 VPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEV 181
           VPP+ +RP  +   S   E+D+T +   I+  +  +       N A +S+  WE LQ  V
Sbjct: 260 VPPVCVRPRGMSTTSHIREDDLTTQYNEILICSDMMSDG---TNDAARSVETWELLQTRV 316

Query: 182 AQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKI 241
           A+ +++ + G P  ++       + QR+KGKQGRFRGNLSGKRV+++GR+VISPDPNL+I
Sbjct: 317 ARLLDAALPGFPSHLRTVE-CKSYAQRMKGKQGRFRGNLSGKRVDFSGRSVISPDPNLRI 375

Query: 242 TEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTAR--VLYGKF 299
            E+A+P+R+AR+LTYP+RV   NI+ +R+ ++NGP  +PGA  +      +R  +   + 
Sbjct: 376 DELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGALTVYLSKECSRKSLRNARD 435

Query: 300 RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
           R  +A  L  G +V+RH+ +GD +LFNRQPSLHR+S+M HRAR++P+RT RFNE  C PY
Sbjct: 436 REAIAARLSIGDVVERHVMNGDYILFNRQPSLHRISLMAHRARVLPFRTFRFNECCCAPY 495

Query: 360 NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
           NADFDGDEMN+HV QTEEAR EA  LM   +N+ T KNGE ++A TQDFLT+++L+T +D
Sbjct: 496 NADFDGDEMNIHVVQTEEARAEAKELMLTSHNIITAKNGEPIIACTQDFLTAAYLVTSRD 555

Query: 420 TFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTV 479
             +DRA+F+ M  +      +  LP PAILKP ELWTGKQLF +++RP    ++ +NL  
Sbjct: 556 ALFDRASFTQMVSHWLGNETQYALPIPAILKPAELWTGKQLFELILRPTPETQLLLNLEA 615

Query: 480 KEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLL 539
           K + YS        D+        P +G+V F +S  +SG+L K  LG G KDGL++ L 
Sbjct: 616 KARFYSGA---GRHDD--------PAEGYVAFLDSVFLSGRLDKKLLGGGAKDGLFARLY 664

Query: 540 RDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKI 599
              G   T+ CM+R+A+ +AR++ N+GFS+G+ DV P   L++KK  +++ +++ C+  I
Sbjct: 665 ALGGGEQTATCMSRIAQFTARYLQNYGFSLGLGDVSPTPSLNEKKAAVLAVSFDKCDRLI 724

Query: 600 KEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR-NSPLIMSQCGSKG 658
                G+L  KPG    Q+LEA++   L+++R+  G A + +L  + N+PLIM   GSKG
Sbjct: 725 SLAKTGRLIPKPGMSVKQSLEAMLNAELSQVRDACGSAAVQALDAKSNAPLIMVNSGSKG 784

Query: 659 SPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEF 718
           S +N +QM+ACVGQQ+V G+R  N F DR+LPHFPR A++PA++GFVA+SFYSGLS TEF
Sbjct: 785 SALNTAQMMACVGQQTVSGKRIMNAFQDRALPHFPRFAEDPASRGFVASSFYSGLSPTEF 844

Query: 719 FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
           FFH M GREG+VDTAVKTA+TGY+ RRL KA+E+LS+ YD SVR+  G IVQ  YG+DGM
Sbjct: 845 FFHGMAGREGIVDTAVKTAETGYIYRRLSKAMENLSVGYDASVRSVQGNIVQLRYGEDGM 904

Query: 779 DPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFL 838
           DP  MEG  G PLN D+  +  +A    A  R+   + +  ++ +   + G  + ++  L
Sbjct: 905 DPWLMEGAHGTPLNLDQEWLSNRA----AYARFR--KHIDSVISEGWGSGGLAASADPLL 958

Query: 839 NSLRKFFE 846
            + R+ ++
Sbjct: 959 QTYRRLYD 966



 Score =  275 bits (703), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 161/385 (41%), Positives = 229/385 (59%), Gaps = 34/385 (8%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T+  L  F++    +   K  E GT  GAI AQS+GEP TQMTL+TFHFAGVASM+ITQ
Sbjct: 1115 LTKGMLLHFLEASARKVHRKLCEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQ 1174

Query: 941  GVPRIKEIINGAKRISTPIITAELECND-------------NENAARVVKGRIEKTLLGQ 987
            GVPR+ EIIN  K I+TP+ITA +   D                AAR VKG +E+ LL +
Sbjct: 1175 GVPRLVEIINANKSIATPVITAPIVLEDEFTSIDLASASRTQYQAARAVKGLMERVLLKE 1234

Query: 988  VAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIV------QTPKIKLKQQHI 1041
            + + +  V+T R   I I L+ME I+   L I+A +V + +        +P   L +   
Sbjct: 1235 ITREMVEVVTPRAYYIHIFLNMELIERLLLPIDAAVVCQRLYAAAARPMSPLRHLSEACA 1294

Query: 1042 KVLDFRKLEIFP-PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKEN 1100
             V+    L I     D +++HF +  L  +LP ++V G+  V RV+IA++ +        
Sbjct: 1295 DVVSRDSLVIKSYEKDPARVHFNVQHLLTLLPDLVVGGVPGVNRVMIADRSE-------- 1346

Query: 1101 GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKA 1160
                  +LL EG  L +VM    +DG +T  NH+  +++ LGIEAAR  I+ EI   ++A
Sbjct: 1347 ------KLLAEGAELLSVMSLPYVDGVRTTCNHVAVIERALGIEAARETIVKEITSILQA 1400

Query: 1161 HGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRD 1220
            + ++ID RH+ LLAD+MT RG VLGITR+GIQKM+ +VL +ASFE+T +HL+NA++  R+
Sbjct: 1401 YSLNIDIRHIYLLADVMTSRGVVLGITRYGIQKMNNNVLTMASFERTTEHLYNAAMTERE 1460

Query: 1221 DRIEGVSECIIMGIPMPLGTGILKI 1245
            D    VSE II+G P+PLGT    I
Sbjct: 1461 DVNLSVSESIIIGKPIPLGTSSFNI 1485


>gi|403223773|dbj|BAM41903.1| DNA-directed RNA polymerase III largest subunit RPC1 [Theileria
            orientalis strain Shintoku]
          Length = 1643

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/821 (45%), Positives = 503/821 (61%), Gaps = 61/821 (7%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
             + P  + + K+ + +S++  C     K   CPRC    G +KK V              
Sbjct: 211  FKRPIEDPVVKSLIFRSVLDMCR----KVKFCPRCEAPQGSIKKVVK------------P 254

Query: 61   SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNI 120
            +  +F   + H  + K +  V    L P+ V  LF+ +    C+V+ + E PE+LIIT++
Sbjct: 255  TTDQFMK-LKHCIKQKGSSRVEVEELTPLVVKQLFENIDPIHCKVMNI-ENPERLIITSL 312

Query: 121  AVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
            A PP  IRP++ + G  + E+D+T     I+  N  L+ ++       + +  W+ LQV+
Sbjct: 313  AAPPNCIRPTISIQGQGTTEDDLTVDFSDIVDINNLLKNQIKNGLQTNRFIGNWQILQVQ 372

Query: 181  VAQYINSDVRGVPF---SMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDP 237
              ++INS+  G+     S  + +P  G  +RLKGK+GRFRGNLSGKRV+++ RTVISPDP
Sbjct: 373  CTRFINSEYPGLNHLLTSRNITKPGRGLCERLKGKEGRFRGNLSGKRVDFSARTVISPDP 432

Query: 238  NLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYG 297
            N+ I EV IP  +AR LT+PERVS +NIE +++ I NG   +PGA  +   DG+   L  
Sbjct: 433  NVGIDEVVIPEWIARRLTFPERVSSYNIEVMKKAILNGESVWPGASYVHKLDGSKCSLRF 492

Query: 298  KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCN 357
                 ++  ++ G IV+RHL +GD+V+FNRQPSLHR+SIMCHRARIM   T RFNE VC 
Sbjct: 493  ANPKHVSENIQVGDIVERHLWNGDLVIFNRQPSLHRLSIMCHRARIMRGSTFRFNECVCT 552

Query: 358  PYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR 417
            PYNADFDGDEMN+H+PQT EA+ E+L L+ VQ NL TP+NGE L+A  QDFL SS+L+T 
Sbjct: 553  PYNADFDGDEMNIHLPQTYEAKAESLHLLSVQKNLTTPRNGEPLIAPVQDFLCSSYLLTN 612

Query: 418  KDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNL 477
            KD F  RA F  +  Y  D    VDLP P+I+ PV LWTGKQ F+VLIRP+   +V VNL
Sbjct: 613  KDMFLTRAQFCQIISYFTDASIHVDLPPPSIVHPVTLWTGKQAFNVLIRPNRASKVMVNL 672

Query: 478  TVKEKTYSN---------KLIRTEGDEEIR----------------------------IE 500
             VKE+ + +         K  R  GD   +                             E
Sbjct: 673  RVKEREFMDPNVYYKSGGKGARGMGDNRTKRRGPEDMDLDEEEDEQNSRESWGAAVKLDE 732

Query: 501  TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             MCP+DG+V    SEL+SG LG  +LG   K GL+  L+    A  +S CM R++KLS+R
Sbjct: 733  CMCPHDGYVVIYKSELLSGSLGVRSLG-PTKGGLFYELMLKNSAKVSSECMLRVSKLSSR 791

Query: 561  WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
            W+  +G +IG+DDV P +EL +KK +L+ + Y   +  I  +    LQ  PGC   +TLE
Sbjct: 792  WLSEYGMTIGLDDVTPSEELINKKKQLLLDGYLRVDEAISNFE--FLQPYPGCTREETLE 849

Query: 621  AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
              +  IL+ +R ++GK C   L   N PLIM   GSKG+ INI+QMVACVGQQ+V G+R 
Sbjct: 850  LQVKSILDELRNESGKICTSLLSPDNKPLIMFNSGSKGALINIAQMVACVGQQNVSGQRI 909

Query: 681  PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
             NGFI+R+LPHFP   K+  ++GFVANSF++GL   EFFFHTM GREGL+DTAVKT++TG
Sbjct: 910  QNGFIERTLPHFPMGCKDAKSRGFVANSFFTGLEPEEFFFHTMSGREGLIDTAVKTSETG 969

Query: 741  YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPA 781
            YM RRL+K +EDL+I YD+SVR   G +VQFLYGDDG+  A
Sbjct: 970  YMQRRLMKFMEDLAICYDHSVRTGDGQVVQFLYGDDGLTSA 1010



 Score =  305 bits (780), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 180/377 (47%), Positives = 240/377 (63%), Gaps = 18/377 (4%)

Query: 877  KTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 936
            K   ++ +Q+  FI+  +  Y+    E G AIGA+GAQSIGEP TQMTLKTFHFAGVASM
Sbjct: 1273 KVHWLSLEQVFEFIRYTWKHYQKCICEPGEAIGALGAQSIGEPATQMTLKTFHFAGVASM 1332

Query: 937  NITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVM 996
            N+T GVPRIKEII  + +I+TPII   LE   N + A  VK RIEKT LGQV  S+K + 
Sbjct: 1333 NVTLGVPRIKEIIGASAKIATPIIEVPLEEKTNYDFALKVKSRIEKTTLGQVCTSVKQMY 1392

Query: 997  TSRLASIVIALDMETIQDAHLCINADIVK----ESIVQTPKI-KLKQQHIKVLDFRKLEI 1051
            T + + +++ L+ + I   +L INA+ V+    E I Q  KI K+      V    + +I
Sbjct: 1393 TPQSSKLLLTLNQKLINQLYLPINANKVRTRVVEIISQIKKIGKIVIPKSSVYAVGEWQI 1452

Query: 1052 FPPVDKSKIHFELY---SLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRL 1108
               +D    H + +   +L   +  ++V G K V+R VI      KR+    G    Y++
Sbjct: 1453 C--MDLGPTHHQFFQQNTLVTSILQLVVAGCKEVKRAVI------KRENTAAG--PNYQI 1502

Query: 1109 LVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKR 1168
             VEG GL+ VMGA+G+     KSNH+FEV + LGIEAAR  II EI + M A+ + ID R
Sbjct: 1503 AVEGYGLKEVMGADGVLWSSVKSNHVFEVAEVLGIEAARSVIISEIQKCMDAYSIDIDGR 1562

Query: 1169 HMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSE 1228
            +M LLAD+MTF+G+V+GI R GI+KM  S LML+SFE+T DHLF+A+V+ R D I+GVSE
Sbjct: 1563 YMKLLADVMTFKGQVIGINRHGIRKMRSSTLMLSSFEQTNDHLFDAAVHHRKDPIKGVSE 1622

Query: 1229 CIIMGIPMPLGTGILKI 1245
            CIIMG P+ LGTG   I
Sbjct: 1623 CIIMGKPISLGTGSFDI 1639


>gi|162606212|ref|XP_001713621.1| RNA polymerase III largest subunit [Guillardia theta]
 gi|13794541|gb|AAK39916.1|AF165818_124 RNA polymerase III largest subunit [Guillardia theta]
          Length = 1289

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/1270 (36%), Positives = 684/1270 (53%), Gaps = 133/1270 (10%)

Query: 3    NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESL 62
            N K+E   K  +  +I++KC +      KCP C + NG ++K ++ L  +HD        
Sbjct: 124  NNKVE---KKKIYFNILEKCKSHR----KCPNCEFSNGKIRK-ISNLAFLHD-------- 167

Query: 63   QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITN 119
                        SK  +N    IL P+ +  +F ++   D E++ +++   R E LI   
Sbjct: 168  ---------IDNSKNEINE---ILGPLKIFQIFSKINAEDLELIGVNDYGFRIENLIFFF 215

Query: 120  IAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAG-WETLQ 178
            I +PP  IRPS+ +D   +NE+D+T +L  I  TN  L+ EL E N  +  +   W  LQ
Sbjct: 216  IPIPPSIIRPSIRIDTYTTNEDDLTIKLASIQNTNKKLKYEL-EQNMNYNRIKELWTFLQ 274

Query: 179  VEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPN 238
            +E  QY +SD     F+++      G  QRLKGK GRFRG L GKRV+++ RTVISPDPN
Sbjct: 275  IECYQYFDSDFFQKKFNLK----FQGVFQRLKGKNGRFRGTLIGKRVDFSARTVISPDPN 330

Query: 239  LKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGK 298
            L ++++ IPI + + L++PE+++ +N E+L++CI  G D+YPG   +   D     L   
Sbjct: 331  LFLSQIGIPIIICKNLSFPEKLNFYNYERLKRCILRGNDRYPGVVSVITRDNKKIFLNKS 390

Query: 299  FRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNP 358
             +  +    K G  + RHL   D++LFNRQPSLHR+SIM HR RI   +T R N  VC P
Sbjct: 391  NKKNMMFFSKIGNSIQRHLVKNDIILFNRQPSLHRLSIMAHRIRIFKEKTFRLNHCVCKP 450

Query: 359  YNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK 418
            YNADFDGDEMN+HVPQ+E +RTEA+ L+   NN  TP+NGEIL+A +QDFL+ SF++T +
Sbjct: 451  YNADFDGDEMNLHVPQSETSRTEAITLLNSYNNFYTPRNGEILIACSQDFLSYSFILTSR 510

Query: 419  DTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLT 478
            + F+++   + +    G+  D  +   PAILKP  LWTGKQ+FS ++    N   ++NL 
Sbjct: 511  NIFFNKEEVTGLIS--GEVSDLFNNILPAILKPKILWTGKQIFSEILFFDKNY-YHLNLI 567

Query: 479  VKEKTYSNKLIRTEGDEEIRIET----MCPNDGFVYFRNSELISGQLGKATLGNGNKDGL 534
             K+KT  N  IR E     +  T    +CP +G+   +N+ ++SG+LGK +LG GNK  L
Sbjct: 568  KKQKT--NYQIR-EKFTSRQFNTCSPFVCPIEGWTIIKNNLILSGRLGKTSLGTGNKMSL 624

Query: 535  YSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISEN--- 591
            +S    +  A      + +++ L+  W  N+GFS  I++V+P K +  KK ++IS+    
Sbjct: 625  FSFSRNNNSASEILNSILKISILNQNWFSNYGFSFSINNVKPSKVICKKKEQIISKAKNV 684

Query: 592  YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW-RNSPLI 650
            ++  N K K  N+  L +        T E  +  ILN ++ D G+ C+ +     NS  I
Sbjct: 685  HQSLNYKKKITNKNSLMV------LDTFEEKLNIILNSVKGDLGRICVTTKNIDNNSASI 738

Query: 651  MSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLP--HFPRKAKEPAAKGFVANS 708
            M   GSKGS +N+ QM+  +GQQ +  +R  NGF  R LP   F ++      KG + NS
Sbjct: 739  MVASGSKGSQLNLVQMMLTLGQQMISAKRILNGFSYRILPSQSFKKENMLFNEKGLIENS 798

Query: 709  FYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCI 768
            FYSGL + EFFFH+M GREGL+DTAVKTA+ GY+ RRL+K+LED+SI  D++VR++ G I
Sbjct: 799  FYSGLDSKEFFFHSMAGREGLIDTAVKTAEIGYLQRRLVKSLEDISIMNDSTVRDSFGRI 858

Query: 769  VQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAY 828
             QF +G D ++P N   K     +FD  L   K+T       YL            L  +
Sbjct: 859  YQFTFGGDNVNPENF-SKFYSINSFDFSLKLKKST-----DNYL------------LYVF 900

Query: 829  GKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEV 888
                        LR  F    D L   I     I ++    I     +          E+
Sbjct: 901  ------------LRAHFLRFFDSLTFSINLRNKINFEKILNIKSNFGY---------FEI 939

Query: 889  FIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEI 948
             I+  F  +++  ++ GT +G I AQS+GEPGTQMTL+TFH AG  S NIT G+PRI EI
Sbjct: 940  LIKKYFQTFKLVIIDPGTGVGCISAQSLGEPGTQMTLQTFHSAGTGSQNITSGIPRINEI 999

Query: 949  INGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVI--- 1005
            ++ +K    P+I+ ++   +       +K  ++K  +G +  SI+I +     S+ I   
Sbjct: 1000 LSNSKNTKFPLISYDINFFEFNKKKSRLKFFLKKIKIGFLINSIEIFLHRGFVSVKIHFI 1059

Query: 1006 -----ALDMETIQDAHLCI-----NADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPV 1055
                  LD   I   +  I     N  I+K+S V   K   K++++ VL F K +    +
Sbjct: 1060 KKIYEYLDQSKI--YYFIIKKFHDNTKIIKKSTVFICK---KKKNV-VLQFHKNDF--KI 1111

Query: 1056 DKSKIHF-ELYSLKNV-LPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGT 1113
            D   ++F  LY+   +    +++ G              E  K+  N       + +   
Sbjct: 1112 DDFNLNFINLYNFFRIHFGDIVLTGF------------YESSKINCNFLFNNLEIKISDN 1159

Query: 1114 GLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1173
                ++   GI   K   N+I  +   LGIEA+R  I+ EI  T K+HG+  D RH+ LL
Sbjct: 1160 RFDILLNIPGIIFRKLYCNNINSIYNFLGIEASRELIVLEITNTFKSHGIFSDNRHVYLL 1219

Query: 1174 ADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMG 1233
            AD MTF G ++GI R G+    +SV +LASFEKT ++LFNAS+N    +  GVS+ II G
Sbjct: 1220 ADYMTFNGFIIGINREGLTCNKESVFLLASFEKTMENLFNASLNHTKSKYIGVSDAIIFG 1279

Query: 1234 IPMPLGTGIL 1243
              +P+GTG++
Sbjct: 1280 NSIPIGTGLI 1289


>gi|340344217|ref|ZP_08667349.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrosoarchaeum
            koreensis MY1]
 gi|339519358|gb|EGP93081.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrosoarchaeum
            koreensis MY1]
          Length = 1263

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1182 (35%), Positives = 664/1182 (56%), Gaps = 116/1182 (9%)

Query: 81   VATYILNPVNVLFLFKRMTDTDCEVLY---LSERPEKLIITNIAVPPIAIRPSVIMDGSQ 137
            +  + L P+ +   F ++ D D  +L    ++ RPE  I+  + VPP+ +RPS+I++   
Sbjct: 173  IGEHRLLPITIRERFTQIIDDDLNLLSYDPVTARPEWFILQALPVPPVTVRPSIILETGI 232

Query: 138  SNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ 197
             +E+D+T ++  II+ N  L++               + LQ     Y +++V G+P +  
Sbjct: 233  RSEDDLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHTTTYFDNEVSGIPQAHH 292

Query: 198  -VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTY 256
               RPL    QRLKGK+GRFRG+LSGKRV+++ RTVISPDPNL ++EV +P ++A  LT 
Sbjct: 293  RSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLDLSEVGVPEQVAMKLTI 352

Query: 257  PERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA-RVLYGKFRNQLAVELKSGCIVDR 315
            PE V++ NIE++R  + NGP+K+PG   I  PDG   R+ + + R+ +A  L+ G +V+R
Sbjct: 353  PEIVTEWNIERMRTLVINGPNKFPGVNYIVRPDGVKIRLDFVEDRSTIAETLEIGYLVER 412

Query: 316  HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
            HL +GD+VLFNRQPSLH+MSIM H  R++P +T R + SVC PYNADFDGDEMN+HVPQ+
Sbjct: 413  HLANGDIVLFNRQPSLHQMSIMAHYVRVLPGKTFRLHPSVCPPYNADFDGDEMNLHVPQS 472

Query: 376  EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
            EEAR EA+LLM VQ+ L +P+ G  ++ + +DF+T ++L+T+ DT      F      +G
Sbjct: 473  EEARAEAILLMRVQDQLISPRYGGPIIGALRDFVTGAYLLTKDDTVLTPQEF-YNYAMLG 531

Query: 436  DGMDRVDLPTPAI-LKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
               D+  LP PA   K   ++TGKQLFS+ +    N   YV +T K   +S      + D
Sbjct: 532  GYTDK--LPKPATKTKDGLMYTGKQLFSLFLPKDFN---YV-ITSK---WSKGTKGAQKD 582

Query: 495  EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                          V  +N EL+SG + K+++G    + +   + +DYG       +N +
Sbjct: 583  --------------VVIKNGELLSGVIDKSSIGAEEPESVLHRIAKDYGNTKAKNFLNSI 628

Query: 555  AKLSARWIGNHGFSIGIDDVQ-PKKE----LSDKKGKLISENYEVCNVKIKEYNEGKLQL 609
              +  ++I ++GFS G  D++ P+KE    L D     I E Y + +    +Y +G L+L
Sbjct: 629  LIMVKQYITHYGFSYGYADLEVPEKEKQQILDD-----IQETYGIISDLTSQYEKGTLKL 683

Query: 610  KPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVAC 669
              G    + LEA I + L + R+ AG     SL   N+  IM+  G++GS +NI QM   
Sbjct: 684  TRGMRPEEALEAYIVNELGKARDKAGMTADQSLDQSNAGRIMATTGARGSALNIGQMAGA 743

Query: 670  VGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
            +GQQS  G R   G+ +R+LPH+    K P A GFV +++  GLSA EFFFH MGGREGL
Sbjct: 744  LGQQSRRGSRLHAGYNNRALPHYQEHDKNPDAHGFVKSNYREGLSALEFFFHAMGGREGL 803

Query: 730  VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGE 789
            VDTAV+T  +GYM RRLI ALE + ++YD +VR+  G I+QFLYG+DG+D A  +   GE
Sbjct: 804  VDTAVRTQQSGYMQRRLINALEHIRLEYDGTVRDPHGHIIQFLYGEDGIDVAKSD--HGE 861

Query: 790  PLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG---KESCSEAFLNSLRKFFE 846
              N +RL   +++       +  + ++++E+ +K    +    KE  SE  L+S      
Sbjct: 862  AFNVNRL---IESQIIVDSGKKATKEEITELTKKYTKTFNPRLKELVSEGLLDS------ 912

Query: 847  GQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGT 906
                KL K+                               E+  +   S Y   +VE G 
Sbjct: 913  ----KLSKE-----------------------------GAEIVCKKGLSLYNKAKVEPGQ 939

Query: 907  AIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELEC 966
            A+G I AQSIGEPGTQMTL+TFHFAG+A  N+T G+PR+ E+++  K+  TP +   L  
Sbjct: 940  AVGIITAQSIGEPGTQMTLRTFHFAGIAERNVTLGLPRLIELVDARKKPVTPTMDIYL-- 997

Query: 967  NDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKE 1026
             DNE+     K   EK +   +A++   V+ +++++++   + +      L ++A+ +KE
Sbjct: 998  -DNES-----KKSREKAI--DIARN---VLQTKVSALISDSETDYTSQIKLILSANRLKE 1046

Query: 1027 SIVQTPKIKLKQQH---IKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVE 1083
                  +++   Q     K+     L     VD+S     + +++N +    VKG+  +E
Sbjct: 1047 RGCTVSEVEAALQSNKKFKIETTGDLITLKLVDESDAP-TVIAIRNKVLNTTVKGVPDIE 1105

Query: 1084 RVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
            RV + +K+ E            + +   G+ +  V+  +GID    ++N++FE+  TLGI
Sbjct: 1106 RVTLVQKDDE------------WVIQTTGSNIAKVLEVQGIDKKNVRTNNVFEIAGTLGI 1153

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            EA+R  +I+E+  T++  G+ +D R++ML++DLM  RG +  I R GI     SVL  A+
Sbjct: 1154 EASRNALINELKNTLEDQGLEVDNRYIMLVSDLMCSRGYMQQIGRHGIAGTKDSVLARAA 1213

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            FE T   + +A++ G  ++++G++E +I+G  +P+G+G + +
Sbjct: 1214 FEITVPTIAHAALAGEVEQLKGITENVIVGSMIPIGSGTVDL 1255


>gi|84997133|ref|XP_953288.1| DNA-directed RNA polymerase III largest subunit (RPC homologue)
           [Theileria annulata strain Ankara]
 gi|65304284|emb|CAI76663.1| DNA-directed RNA polymerase III largest subunit (RPC homologue),
           putative [Theileria annulata]
          Length = 1648

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/794 (46%), Positives = 499/794 (62%), Gaps = 48/794 (6%)

Query: 14  LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTK 73
           + K+IV+ C  ++    KCPRC    G++KK V    II    K+   ++   S    T 
Sbjct: 221 IFKNIVQDCKKIS----KCPRCQSPQGVIKKIVK--PIIDQFMKLKHIVKYKESGKMKTV 274

Query: 74  ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIM 133
           E +         LNP+ V  LF+ +     +VL +   PEKLII+N+  PP  IRPSV +
Sbjct: 275 EEE---------LNPLVVKHLFENIDPVHSKVLNIV-HPEKLIISNLPAPPNCIRPSVSV 324

Query: 134 DGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVP 193
               + E+D+T     I+++N  L+  +         +  W+ +Q +  ++INSD   + 
Sbjct: 325 GEEGTTEDDLTCIFSDIVESNNQLKSYIKNGAQTNSFIVHWQIIQYQCTRFINSDSPALA 384

Query: 194 ---FSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRM 250
               S +V++P  G  QRLKGK+GRFRGNLSGKRV+++ RTVISPDPN+ I EV +P  +
Sbjct: 385 QLLLSRRVSKPGRGIFQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNVGIDEVVVPEWI 444

Query: 251 ARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSG 310
           AR LT+PERV+ +NI  L++ I NG   +PGA  +   DG+   L       ++  L+ G
Sbjct: 445 ARRLTFPERVTKYNIHVLKKAILNGVSVWPGASYVNKLDGSKCSLRFANPKHMSENLQVG 504

Query: 311 CIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNM 370
            IV+RHL +GD+V+FNRQPSLHR+SIMCHRAR+M   T RFNE VC PYNADFDGDEMN+
Sbjct: 505 DIVERHLWNGDIVIFNRQPSLHRLSIMCHRARVMSGSTFRFNECVCLPYNADFDGDEMNL 564

Query: 371 HVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLM 430
           H+PQT EAR EAL L+ V  NL TP+NGE L+A  QDFL +S+L+T KD F +R+ FS +
Sbjct: 565 HLPQTYEARAEALHLLSVLKNLTTPRNGEPLIAPVQDFLCASYLLTSKDMFLNRSEFSQV 624

Query: 431 CCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSN---- 486
             Y  DG  +VDLP P+I+ PV LWTGKQ+FSVLI+P+   +V VN+ V+E+ Y++    
Sbjct: 625 ISYFTDGTIQVDLPPPSIIHPVTLWTGKQVFSVLIKPNNKSKVMVNIRVREREYTDPNQY 684

Query: 487 -KLIRTEGDEEIRIET---------------------MCPNDGFVYFRNSELISGQLGKA 524
            K +  +  E  ++E                      MCP+DG+V    SEL+ G LG  
Sbjct: 685 YKNLNKDNLEGGKVENTKSQTSSNDVKPVSFMKLDDCMCPSDGYVVIYKSELMCGSLGVR 744

Query: 525 TLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKK 584
           +LG  +K GL+  L+       +S CM R++KLS+RW+   G +IG+DDV P KEL DKK
Sbjct: 745 SLG-ASKGGLFYELMLKNSPKISSECMLRVSKLSSRWLSEFGMTIGLDDVTPSKELIDKK 803

Query: 585 GKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW 644
            +L+ + Y   +  I  +    LQ  PGC   QTLE  +  IL+ +R ++GK C   L  
Sbjct: 804 KQLLLDGYSRVDEAISNFQ--FLQPYPGCTREQTLELQVKSILDELRNESGKICTSLLNP 861

Query: 645 RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 704
            N PLIM   G+KG+ INI+QMVACVGQQ+V G+R  NGFI R+LPHF    K+  ++GF
Sbjct: 862 DNKPLIMFNSGAKGALINIAQMVACVGQQNVSGQRIQNGFIGRTLPHFTMGCKDAKSRGF 921

Query: 705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
           VANSF++GL   EFFFHTM GREGL+DTAVKT++TGYM RRL+K +EDLS+ YD SVR +
Sbjct: 922 VANSFFTGLEPEEFFFHTMSGREGLIDTAVKTSETGYMQRRLMKVMEDLSVCYDYSVRTS 981

Query: 765 GGCIVQFLYGDDGM 778
            G IVQFLYGDDG+
Sbjct: 982 DGQIVQFLYGDDGL 995



 Score =  298 bits (762), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 193/464 (41%), Positives = 271/464 (58%), Gaps = 37/464 (7%)

Query: 805  PPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDK----LDKKIKFV- 859
            PP    +    QVS+       +YG  S  E F N++ +      +K    LDKK + V 
Sbjct: 1195 PPTIYNHSCVSQVSDYP----YSYGIGSVYE-FGNTIERVLMEHSEKIALVLDKKYEQVF 1249

Query: 860  EDIGWDDKSQILE-EVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGE 918
            E I  + ++ I   ++ +  + I+ +Q+  FI+  +  Y+    E G AIGA+G+QSIGE
Sbjct: 1250 ESINTESQTVIERFKLVNTVNRISLEQMFEFIRYSWKDYQKSLCEPGEAIGALGSQSIGE 1309

Query: 919  PGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKG 978
            P TQMTLKTFHFAGVASMN+T GVPRI+EIIN    I+TPII   LE   +   A  VK 
Sbjct: 1310 PATQMTLKTFHFAGVASMNVTLGVPRIQEIINATSLIATPIIEVPLEDKTSYEFALKVKS 1369

Query: 979  RIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINAD--------------IV 1024
            +IEKT LGQ+  +IK + T + + ++  L+   I+  HL IN++                
Sbjct: 1370 KIEKTTLGQICLNIKQLYTPQNSKLLFTLNRNLIEQLHLEINSNKFLIIPDFYTHHIYTY 1429

Query: 1025 KESIVQTP---KIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             + I++T    K+K+ +  +  +   ++ I  P ++    F+  +L + L  ++V G K+
Sbjct: 1430 LDIIIETGSFGKVKIPKNSVYSIGDWQICIELPSNQQHF-FQQNALISGLTQLVVAGYKS 1488

Query: 1082 VERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTL 1141
            ++R VI      KR+    G    Y++ VEG GLQ VMG+ G+     KSNH+ EV + L
Sbjct: 1489 IKRAVI------KRESTPQG--PNYQIAVEGYGLQEVMGSYGVMSSAVKSNHVSEVAKVL 1540

Query: 1142 GIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLML 1201
            GIEAAR  II EI + M A+ + ID R+M LL D+MTFRGEV+GI RFGIQKM  S LML
Sbjct: 1541 GIEAARSVIISEIQKCMDAYSIDIDCRYMKLLGDVMTFRGEVVGINRFGIQKMRSSALML 1600

Query: 1202 ASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            ASFE+T DHL  A+++ R D I+GVSECIIMG P+ LGTG   I
Sbjct: 1601 ASFEETNDHLLEAALHHRRDPIKGVSECIIMGKPISLGTGSFDI 1644


>gi|401428277|ref|XP_003878621.1| DNA-directed RNA polymerase III largest subunit ,putative
           [Leishmania mexicana MHOM/GT/2001/U1103]
 gi|322494870|emb|CBZ30173.1| DNA-directed RNA polymerase III largest subunit ,putative
           [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1589

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/848 (42%), Positives = 531/848 (62%), Gaps = 40/848 (4%)

Query: 17  SIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKV------------TESLQE 64
           +I+K     A K   C  CG +NG V++ V  + I+H++  V            T   QE
Sbjct: 141 AIIKGIQEDAYKTRVCLMCGGLNGTVRR-VRPMRIVHEKYLVDLRRGEQANEDPTAFFQE 199

Query: 65  -FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS--ERPEKLIITNIA 121
              SA     E  A        L+P  V  LF+ +      +L L     P  L+I+ + 
Sbjct: 200 ELRSAAMQNSEVGAHKEFVHEFLHPQRVKELFEAIPLEQVPLLGLQPGTSPCSLLISTLL 259

Query: 122 VPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEV 181
           VPP+ +RP  +   S   E+D+T +   I+  +  +       N A +S+  WE LQ  V
Sbjct: 260 VPPVCVRPRGMSTTSHIREDDLTTQYNEILICSDMMSDG---TNDAARSVETWELLQTRV 316

Query: 182 AQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKI 241
           A+ +++ + G P  ++       + QR+KGKQGRFRGNLSGKRV+++GR+VISPDPNL+I
Sbjct: 317 ARLLDAALPGFPSHLRTVE-CKSYAQRMKGKQGRFRGNLSGKRVDFSGRSVISPDPNLRI 375

Query: 242 TEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTAR--VLYGKF 299
            E+A+P+R+AR+LTYP+RV   NI+ +R+ ++NGP  +PGA  +      +R  +   + 
Sbjct: 376 DELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGALTVYLSKECSRKSLRNARD 435

Query: 300 RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
           R  +A  L  G +V+RH+ +GD +LFNRQPSLHR+S+M HRAR++P+RT RFNE  C PY
Sbjct: 436 REAIAARLSIGDVVERHVMNGDYILFNRQPSLHRISLMAHRARVLPFRTFRFNECCCAPY 495

Query: 360 NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
           NADFDGDEMN+HV QTEEAR EA  LM   +N+ T KNGE ++A TQDFLT+++L+T +D
Sbjct: 496 NADFDGDEMNIHVVQTEEARAEAKELMLTSHNIITAKNGEPIIACTQDFLTAAYLVTARD 555

Query: 420 TFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTV 479
             +DRA+F+ M  +      +  LP PAILKP ELW+GKQLF +++RP +  ++ +NL  
Sbjct: 556 ALFDRASFTQMVSHWLGSETQYALPIPAILKPAELWSGKQLFELILRPTSETQLLLNLEA 615

Query: 480 KEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLL 539
           K + YS        D+        P +G+V F +S  +SG+L K  LG G KDGL++ L 
Sbjct: 616 KARFYSGA---GRHDD--------PAEGYVAFLDSVFLSGRLDKKLLGGGAKDGLFARLY 664

Query: 540 RDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKI 599
              G   T+ CM+R+A+ +AR++ N+GFS+G+ DV P   L++KK  +++ +++ C+  I
Sbjct: 665 ALGGGEQTATCMSRIAQFTARYLQNYGFSLGLGDVSPTSSLNEKKAAVLAVSFDKCDHLI 724

Query: 600 KEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR-NSPLIMSQCGSKG 658
                G+L  KPG    Q+LEA++   L+++R+  G A + +L  + N+PLIM   GSKG
Sbjct: 725 SLAKTGRLIPKPGLSVKQSLEAMLNAELSQVRDACGSAAVQALDAKSNAPLIMVNSGSKG 784

Query: 659 SPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEF 718
           S +N +QM+ACVGQQ+V G+R  N F DR+LPHFPR A++PA++GFVA+SFYSGLS TEF
Sbjct: 785 SALNTAQMMACVGQQTVSGKRIMNAFQDRALPHFPRFAEDPASRGFVASSFYSGLSPTEF 844

Query: 719 FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
           FFH M GREG+VDTAVKTA+TGY+ RRL KA+E+LSI YD SVR+  G IVQ  YG+DGM
Sbjct: 845 FFHGMAGREGIVDTAVKTAETGYIYRRLSKAMENLSIGYDASVRSVQGSIVQLRYGEDGM 904

Query: 779 DPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFL 838
           DP  MEG  G PLN D+  +  +A    A  R+   +Q++ +  ++  + G  + ++  L
Sbjct: 905 DPWLMEGAHGTPLNLDQEWLSSRA----AYARFR--KQIASVFSERQGSGGLAASADPLL 958

Query: 839 NSLRKFFE 846
            +  + ++
Sbjct: 959 QTYHRLYD 966



 Score =  275 bits (704), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 159/385 (41%), Positives = 229/385 (59%), Gaps = 34/385 (8%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T+  L  F++    +   K  E GT  GAI AQS+GEP TQMTL+TFHFAGVASM+ITQ
Sbjct: 1120 LTKGMLLHFLEASARKVHRKLCEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQ 1179

Query: 941  GVPRIKEIINGAKRISTPIITAELECND-------------NENAARVVKGRIEKTLLGQ 987
            GVPR+ EIIN  K I+TP+ITA +   D                AAR VKG +E+ LL +
Sbjct: 1180 GVPRLVEIINANKSIATPVITAPIVLEDEFTSIDLASATRTQHQAARAVKGLMERVLLKE 1239

Query: 988  VAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIV------QTPKIKLKQQHI 1041
            + + +  V+T R   I I L+ME I+   L I+A +V + +        +P   L +  +
Sbjct: 1240 ITREMVEVVTPRTYYIHIFLNMELIERLLLPIDATVVCQRLYAAAARPMSPLRHLSEACV 1299

Query: 1042 KVLDFRKLEIFP-PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKEN 1100
             V+    L +     D +++HF +  L  +LP ++V G+  V RV+IA++ +        
Sbjct: 1300 DVVSRDSLVVKSYEKDPARVHFNVQHLLTLLPDLVVGGVPGVNRVMIADRSE-------- 1351

Query: 1101 GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKA 1160
                  +LL EG  L +VM    +DG +T  NH+  +++ LGIEAAR  I+ E    ++A
Sbjct: 1352 ------KLLAEGAELLSVMSLPYVDGVRTTCNHVAVIERALGIEAARETIVKETTSILQA 1405

Query: 1161 HGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRD 1220
            + ++ID RH+ LLAD+MT RG VLGITR+GIQKM+ +VL +ASFE+T +HL+NA++  R+
Sbjct: 1406 YSLNIDIRHIYLLADVMTSRGVVLGITRYGIQKMNNNVLTMASFERTTEHLYNAAMTERE 1465

Query: 1221 DRIEGVSECIIMGIPMPLGTGILKI 1245
            D    VSE II+G P+PLGT    I
Sbjct: 1466 DVNLSVSESIIIGKPIPLGTSSFSI 1490


>gi|407461850|ref|YP_006773167.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
            Nitrosopumilus koreensis AR1]
 gi|407045472|gb|AFS80225.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
            Nitrosopumilus koreensis AR1]
          Length = 1263

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1178 (35%), Positives = 660/1178 (56%), Gaps = 108/1178 (9%)

Query: 81   VATYILNPVNVLFLFKRMTDTDCEVLY---LSERPEKLIITNIAVPPIAIRPSVIMDGSQ 137
            +  + L P+ +   F ++ D D E+L    ++ RPE  ++    VPP+ +RPS+I++   
Sbjct: 173  IGEHRLLPITIRERFSQILDEDLELLSYDPITARPEWFVLQAFPVPPVTVRPSIILETGI 232

Query: 138  SNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ 197
             +E+D+T ++  II+ N  L++               + LQ     Y +++V G+P +  
Sbjct: 233  RSEDDLTHKMVDIIRVNQRLKESKDAGTPPLIVQDLVDLLQYHTTTYFDNEVSGIPQAHH 292

Query: 198  -VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTY 256
               RPL    QRLKGK+GRFRG+LSGKRV+++ RTVISPDPNL ++EV +P  +A  LT 
Sbjct: 293  RSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLDLSEVGVPEVVAMKLTI 352

Query: 257  PERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA-RVLYGKFRNQLAVELKSGCIVDR 315
            PE V++ NIE++R+ + NGP+K+PG   I  PDG   R+ + + R+ +A  L+ G +V+R
Sbjct: 353  PEIVTEWNIERMRKLVINGPEKFPGVNYIVRPDGVKIRLDFVEDRSTIAETLEIGYLVER 412

Query: 316  HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
            HL DGD+V+FNRQPSLH+MSIM H  R++P +T R + SVC PYNADFDGDEMN+HVPQ+
Sbjct: 413  HLADGDIVMFNRQPSLHQMSIMAHYVRVLPGKTFRLHPSVCPPYNADFDGDEMNLHVPQS 472

Query: 376  EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
            EEAR EA+LLM VQ+ L +P+ G  ++ + +DF+T ++L+T+ DT      FS +   +G
Sbjct: 473  EEARAEAILLMRVQDQLISPRYGGPIIGALRDFVTGAYLLTKDDTTLSIQEFSNLAM-LG 531

Query: 436  DGMDRVDLPTPAI-LKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
               D   LP PA   K    +TGKQLFS+ +    N   YV  +   K    K       
Sbjct: 532  GYTD--PLPKPATKTKDGPAYTGKQLFSLFLPKDFN---YVITSKWSKGTKGK------- 579

Query: 495  EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                     P D  V  +N ELISG + K+++G    + +   + +DYG       +N +
Sbjct: 580  ---------PKD--VVIKNGELISGVIDKSSIGAEEPESVLHRIAKDYGNAVGKTFLNSI 628

Query: 555  AKLSARWIGNHGFSIGIDD-VQPKKELSDKKGKL--ISENYEVCNVKIKEYNEGKLQLKP 611
              +  ++I ++GFS G  D + P K   DK+  L  I E Y++ +    ++N+G L+L  
Sbjct: 629  LIMVKQFITHYGFSYGYGDLIVPDK---DKQQILDDIQETYDIVDDLTDQFNKGTLKLTR 685

Query: 612  GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
            G    + LEA I + L + R+ AG      LP  N+  IM+  G++GS +N+ QM   +G
Sbjct: 686  GMRPEEALEAYIVNELGKARDKAGSTANDCLPADNAGKIMATTGARGSSLNVGQMAGALG 745

Query: 672  QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
            QQS  G R  +G+ +R+L H+      P A GFV +++  GLSA EFFFH MGGREGLVD
Sbjct: 746  QQSRRGNRLHDGYNNRALTHYQEHDNNPDAHGFVKSNYREGLSALEFFFHAMGGREGLVD 805

Query: 732  TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL 791
            TAV+T  +GYM RRLI ALE + ++YD +VR+  G IVQFLYG+DG+D    +   GE  
Sbjct: 806  TAVRTQQSGYMQRRLINALEHIRLEYDGTVRDPHGHIVQFLYGEDGIDV--QKSDHGEAF 863

Query: 792  NFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQ-LAAYGKESCSEAFLNSLRKFFEGQQD 850
            N  RL                        VE Q +   GK++  E      +K+ +    
Sbjct: 864  NPSRL------------------------VESQTIIDSGKKATKEEIETLAKKYTKTFNP 899

Query: 851  KLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGA 910
            +L      V D        +LE      SG+++  +E   +     Y   +VE G A+G 
Sbjct: 900  RL---TTLVTD-------ALLE------SGLSKDGIETVCKKGLLLYNKAKVEPGQAVGI 943

Query: 911  IGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNE 970
            I AQSIGEPGTQMTL+TFHFAG+   N+T G+PR+ E+++  K+  TP  T ++  ++  
Sbjct: 944  ITAQSIGEPGTQMTLRTFHFAGIKERNVTLGLPRLIELVDARKKPVTP--TMDIYLDEES 1001

Query: 971  NAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKE---S 1027
              +R      EK +   VA++   V+ +++++++   + +   +  L ++ + +KE   S
Sbjct: 1002 KKSR------EKAI--DVARN---VLQTKVSALIADSETDYATEIKLVLSENRLKERGCS 1050

Query: 1028 IVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVI 1087
            I +        +  K+    +L     V++S     + +++N +    VKG+  +ERV +
Sbjct: 1051 IAEVEAALSSNKKFKLETTGELITLKLVEESDTATAI-AIRNKVLNTTVKGVPDIERVTL 1109

Query: 1088 AEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAAR 1147
             +K+ E            + +   G+ +  V+  +GID    ++N++FE+  TLGIEAAR
Sbjct: 1110 VQKDDE------------WVIQTTGSNVAKVLEVKGIDKKNVRTNNVFEIAGTLGIEAAR 1157

Query: 1148 ICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKT 1207
              +I+E+N T++  G+ +D R++ML+ADLM  RG +  I R GI     SVL  A+FE T
Sbjct: 1158 NSLINELNSTLEDQGLEVDNRYIMLVADLMCSRGYMQQIGRHGIAGTKDSVLARAAFEIT 1217

Query: 1208 ADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               + +A++ G  ++++G++E +I+G  +P+G+G + +
Sbjct: 1218 VPTIAHAALGGEIEQLKGITENVIVGSNIPIGSGTVDL 1255


>gi|156088925|ref|XP_001611869.1| RNA polymerase Rpb1, domain containing protein [Babesia bovis]
 gi|154799123|gb|EDO08301.1| RNA polymerase Rpb1, domain containing protein [Babesia bovis]
          Length = 1541

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/795 (45%), Positives = 500/795 (62%), Gaps = 35/795 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
           M +P +  L    L K I+++C     K  KCPRC    G++++ V           V +
Sbjct: 209 MDDPLLRPL----LFKQIMQECR----KITKCPRCEARQGVIRRIV---------KPVMD 251

Query: 61  SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNI 120
              +    I + +  K  ++     LNP+ V  LF+ +  T  ++L +   PEKL+I N+
Sbjct: 252 QFMKLRHVIKYKEGGK--LHSIEEDLNPLVVKQLFESIDPTHAKILNVVS-PEKLLINNL 308

Query: 121 AVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
           AVPP  IRPSV ++G  + E+D+T     I++ N   + ++   +   + +  W+ LQ++
Sbjct: 309 AVPPSCIRPSVTIEGQGTTEDDLTCIFSDIVELNNGWKNQIRNGSQISQFILSWQCLQLQ 368

Query: 181 VAQYINSDVRGVP---FSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDP 237
             + IN++   V     S  +++P  G  QRLKGK+GRFRGNLSGKRV+++ RTVISPDP
Sbjct: 369 CTRLINAEAPAVSQLLVSRNISKPGRGVCQRLKGKEGRFRGNLSGKRVDFSARTVISPDP 428

Query: 238 NLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYG 297
           N+ + EV +P  +A  LT+PE V+D NI  +++ + NG   +PGA  ++  +G    L  
Sbjct: 429 NVGVDEVVVPEWIAMKLTFPEEVTDSNISIMKKAVLNGVSIWPGATYVKKQNGGKCSLQY 488

Query: 298 KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCN 357
                ++  L  G +V RHL +GDVVLFNRQPSLHRMSIM HR R+MP  T RFNE VC 
Sbjct: 489 ANPKYMSDNLTVGDVVLRHLWNGDVVLFNRQPSLHRMSIMAHRVRVMPGSTFRFNECVCQ 548

Query: 358 PYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR 417
           PYNADFDGDEMN+H+PQT EA+ EAL LM V +NL TP+NGE L+A+ QDFL +S+L+T 
Sbjct: 549 PYNADFDGDEMNLHLPQTYEAKAEALHLMSVLHNLTTPRNGEPLIAAVQDFLCASYLLTS 608

Query: 418 KDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNL 477
           KD F  RA F   CC+  D   +VDLP PAI+ PV LWTGKQ+F+ L+RP+   +V VN 
Sbjct: 609 KDRFLTRAEFCQACCHFTDAASQVDLPPPAIIYPVMLWTGKQVFNALLRPNRRCKVVVNF 668

Query: 478 TVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
             KE+ + +  +            MCP DG+V F NSEL+SG LGK  LG  +KDGL+  
Sbjct: 669 ECKEREFQDPPVGKNA-------CMCPKDGYVIFHNSELVSGALGKKALG-ASKDGLFYQ 720

Query: 538 LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNV 597
           LL     +  + CM R++KL++RW+   G +IG+DDV+P  EL   K +L++E Y     
Sbjct: 721 LLTRNNRYIAAECMLRVSKLTSRWLAGFGMTIGLDDVRPGPELLHHKQELLNEGYAKVTA 780

Query: 598 KIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSK 657
            I  ++   LQ  PGC   +TLE  +  +L+ +R +AGKAC  +L   N PLIM   G+K
Sbjct: 781 AINNFD--TLQALPGCTREETLELQVKRVLDELRNEAGKACNSNLRADNKPLIMFNSGAK 838

Query: 658 GSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATE 717
           G+ INI+QMVA VGQQ+V G+R  NGFI R+LPHF     +  ++GFVANSF+SGL   E
Sbjct: 839 GALINIAQMVALVGQQNVSGQRIENGFIGRTLPHFDIGCMDAKSRGFVANSFFSGLGPEE 898

Query: 718 FFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDG 777
           FFFHTM GREGL+DTAVKT++TGYM RRL+KALE L++ YD++VR   G +VQFLYGDDG
Sbjct: 899 FFFHTMSGREGLIDTAVKTSETGYMQRRLMKALEVLAVCYDHTVRTTDGHVVQFLYGDDG 958

Query: 778 MDPA--NMEGKSGEP 790
           +  A  +M+  + EP
Sbjct: 959 LGGASLHMDTNALEP 973



 Score =  310 bits (793), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 177/368 (48%), Positives = 235/368 (63%), Gaps = 12/368 (3%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +Q+  F++ C+  Y+      G AIGA+GAQSIGEPGTQMTLKTFHFAGVASMN+T 
Sbjct: 1174 LSVRQIFEFVRCCWKDYQRAICVPGEAIGALGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1233

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRL 1000
            GVPRIKEIIN +  I TPII   L  N +   A +VK RIEKT LGQV   IK +     
Sbjct: 1234 GVPRIKEIINASSTIQTPIIEVPLINNKDFEYALMVKARIEKTTLGQVCSDIKEIFGPTG 1293

Query: 1001 ASIVIALDMETIQDAHLCINADIVKESIVQTP---KIKLKQQHIKVLDFRKLEIFPPVDK 1057
            A + + L+   I+   L I+A  V+E I+      K KL +  I V++  +L I     +
Sbjct: 1294 AQLRVTLNENLIKKLLLQIDAFKVREIILDNSVMTKFKLGKHAISVVNKYQLNIDLATSQ 1353

Query: 1058 SKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQA 1117
             +  F+ ++L   L  ++V G K+++R VI        K + + +  +Y+L VEG GLQ 
Sbjct: 1354 HQF-FQQHALIVTLLQIMVAGGKSIKRAVI--------KKETDADGFRYQLAVEGYGLQE 1404

Query: 1118 VMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLM 1177
            V+GA G+     KSNH+ EV + LGIEAAR  II EI + M A+ + ID+R+M LL D+M
Sbjct: 1405 VIGAAGVKSTGVKSNHVLEVAKVLGIEAARSVIISEIQKCMDAYSIDIDQRYMKLLGDVM 1464

Query: 1178 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP 1237
            TFRGEV+GI RFGIQKM  S LMLASFE+T +HLF A+V+   D I+GVSECIIMG  +P
Sbjct: 1465 TFRGEVIGINRFGIQKMRASTLMLASFEETNEHLFEAAVHRLRDPIKGVSECIIMGKQVP 1524

Query: 1238 LGTGILKI 1245
            LGTG   +
Sbjct: 1525 LGTGAFDV 1532


>gi|389603516|ref|XP_001564320.2| putative DNA-directed RNA polymerase III largest subunit
           [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|322504664|emb|CAM38379.2| putative DNA-directed RNA polymerase III largest subunit
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1581

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/820 (44%), Positives = 518/820 (63%), Gaps = 38/820 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKV-- 58
           +R+   E  ++  L+K+I +     A K   C  CG +NG V++ V  + +IH++  V  
Sbjct: 129 LRSTSHEPQQRAALIKAIQED----AYKTRVCLMCGGLNGTVRR-VRPMRVIHEKYLVEL 183

Query: 59  ----------TESLQE-FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLY 107
                     T   QE   SA  H  E  +        L+P  V  LF+ +      +L 
Sbjct: 184 RRGEQANEDPTAFFQEALRSAALHNSEVGSHKEFVHEFLHPQRVKALFEAIPLEQVPLLG 243

Query: 108 LS--ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEAN 165
           L     P  L+I+ + VPP+ +RP  +   S   E+D+T +   I+  +  +       N
Sbjct: 244 LQPGTSPSSLLISTLLVPPVCVRPRGMSTTSHIREDDLTTQYNEILICSDMMNDG---TN 300

Query: 166 SAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRV 225
            A +S+  WE LQ  VA+ +++ + G P  ++       + QR+KGKQGRFRGNLSGKRV
Sbjct: 301 DAARSVETWELLQTRVARLLDAALPGFPSHLRTTE-CKSYAQRMKGKQGRFRGNLSGKRV 359

Query: 226 EYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI 285
           +++GR+VISPDPNL+I E+A+P+R+AR+LTYP+RV   NI+ +R+ ++NGP  +PGA  +
Sbjct: 360 DFSGRSVISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGALTV 419

Query: 286 RYPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARI 343
                 +R  +   + R  +A  L  G +V+RH+ +GD VLFNRQPSLHR+S+M HRAR+
Sbjct: 420 YLSKECSRKSLRNARDREAIAARLSIGDVVERHVMNGDYVLFNRQPSLHRISLMAHRARV 479

Query: 344 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVA 403
           +P+RT RFNE  C PYNADFDGDEMN+HV QTEEAR EA  L+   +++ T KNGE ++A
Sbjct: 480 LPFRTFRFNECCCAPYNADFDGDEMNIHVVQTEEARAEAKELLLSSHHIITAKNGEPIIA 539

Query: 404 STQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSV 463
            TQDFLT+++L+T +D  +DRA F+ M  +  D   +  LP PAILKP ELWTGKQLF +
Sbjct: 540 CTQDFLTAAYLVTARDALFDRATFTQMVSHWLDAETQFALPIPAILKPAELWTGKQLFEL 599

Query: 464 LIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGK 523
           ++RP    ++ +NL  K + YS        D+        P +G+V F +S  +SG+L K
Sbjct: 600 ILRPTPETQLLLNLEAKTRFYSGA---GRHDD--------PAEGYVAFLDSIFLSGRLDK 648

Query: 524 ATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK 583
             LG G KDGL++ L    G   T+ CM+R+A+ +AR++ N+GFS+G+ DV P   LS+K
Sbjct: 649 KLLGGGAKDGLFARLYALGGGEQTATCMSRIAQFTARYLQNYGFSLGLGDVSPTPSLSEK 708

Query: 584 KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLP 643
           K  +++ +++ C+  I     G+L  KPG    Q+LEA++   L+++R+  G A + +L 
Sbjct: 709 KAAVLAVSFDKCDRLISLAKMGRLIPKPGMSVKQSLEAMLNAELSQVRDACGSAAVQALD 768

Query: 644 WR-NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
            + N+PLIM   GSKGS +N +QM+ACVGQQ+V G+R  N F DR+LPHFPR A++PA++
Sbjct: 769 AKSNAPLIMVNSGSKGSALNTAQMMACVGQQTVSGKRIMNAFQDRALPHFPRFAEDPASR 828

Query: 703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
           GFVA+SFYSGLS TEFFFH M GREG+VDTAVKTA+TGY+ RRL KA+E+LS+ YD SVR
Sbjct: 829 GFVASSFYSGLSPTEFFFHGMAGREGIVDTAVKTAETGYIYRRLSKAMENLSVGYDTSVR 888

Query: 763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA 802
           +  G IVQ  YG+DGMDP  MEG  G PLN  +  +  +A
Sbjct: 889 SVQGSIVQLRYGEDGMDPWLMEGSHGTPLNLAQEWLSSRA 928



 Score =  281 bits (719), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 165/385 (42%), Positives = 228/385 (59%), Gaps = 34/385 (8%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T   L  F +    +   K  E GT  GAI AQS+GEP TQMTL+TFHFAGVASM+ITQ
Sbjct: 1114 LTRGMLLRFFEDSARKVHRKLCEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQ 1173

Query: 941  GVPRIKEIINGAKRISTPIITAELECND-------------NENAARVVKGRIEKTLLGQ 987
            GVPR+ EIIN  K I+TP+ITA +   D                AAR VKG +E+ LL +
Sbjct: 1174 GVPRLVEIINANKNIATPVITAPILLEDEFTSIDLASARRTQYQAARAVKGLMERVLLKE 1233

Query: 988  VAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQT---PKIKLKQQHIKVL 1044
            + + +  V+T R   I I LD+  I+   L I+A +V + +      P   L+      +
Sbjct: 1234 ITREMVEVVTPRQYYIQIFLDIGLIERLLLPIDAAVVCQRLYAAAARPMSPLRHLSEACV 1293

Query: 1045 DF--RKLEIFPPVDK--SKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKEN 1100
            D   R   I  P +K  +++HF +  L  +LP ++V GI  V RV+IA++ +        
Sbjct: 1294 DMVSRDSLIVKPYEKDPARVHFNIQHLLTLLPELVVGGIPGVNRVMIADRSE-------- 1345

Query: 1101 GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKA 1160
                  +LL EG  L +VM    +DG +T  NH+  V++ LGIEAAR  I+ EI   ++A
Sbjct: 1346 ------KLLAEGAELLSVMSLPYVDGVRTTCNHVAVVERVLGIEAARETIVKEITSILQA 1399

Query: 1161 HGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRD 1220
            + +SID RH+ LLAD+MT RG VLGITR+GIQKM+ +VL +ASFE+T +HL+NA++  R+
Sbjct: 1400 YSLSIDIRHIYLLADVMTSRGVVLGITRYGIQKMNNNVLTMASFERTTEHLYNAAMTERE 1459

Query: 1221 DRIEGVSECIIMGIPMPLGTGILKI 1245
            D    VSECII+G P+PLGT    I
Sbjct: 1460 DVNLSVSECIIIGKPIPLGTSSFNI 1484


>gi|146098608|ref|XP_001468425.1| putative DNA-directed RNA polymerase III largest subunit
           [Leishmania infantum JPCM5]
 gi|134072793|emb|CAM71509.1| putative DNA-directed RNA polymerase III largest subunit
           [Leishmania infantum JPCM5]
          Length = 1590

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/804 (44%), Positives = 511/804 (63%), Gaps = 34/804 (4%)

Query: 17  SIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKV------------TESLQE 64
           +I+K     A K   C  CG +NG V++ V  + I+H++  V            T   QE
Sbjct: 141 AIIKGIQEDAYKTRVCLMCGGLNGTVRR-VRPMRIVHEKYLVDLRRGEQANEDPTAFFQE 199

Query: 65  -FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS--ERPEKLIITNIA 121
              SA  H  E  A        L+P  V  LF+ +      +L L     P  L+I+ + 
Sbjct: 200 ELRSAAMHNSEVGAHKEFVHEFLHPQRVKELFEAIPREQVPLLGLQPGTSPCSLLISTLL 259

Query: 122 VPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEV 181
           VPP+ +RP  +   +   E+D+T +   I+  +  +       N A +S+  WE LQ  V
Sbjct: 260 VPPVCVRPRGMSTTNHIREDDLTTQYNEILICSDMMSDG---TNDAARSVETWELLQTRV 316

Query: 182 AQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKI 241
           A+ +++ + G P  ++       + QR+KGKQGRFRGNLSGKRV+++GR+VISPDPNL+I
Sbjct: 317 ARLLDAALPGFPSHLRTVE-CKSYAQRMKGKQGRFRGNLSGKRVDFSGRSVISPDPNLRI 375

Query: 242 TEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTAR--VLYGKF 299
            E+A+P+R+AR+LTYP+RV   NI+ +R+ ++NGP  +PGA  +      +R  +   + 
Sbjct: 376 DELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGALTVYLSKECSRKSLRNARD 435

Query: 300 RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
           R  +A  L  G +V+RH+ +GD +LFNRQPSLHR+S+M HRAR++P+RT RFNE  C PY
Sbjct: 436 REAIAARLSIGDVVERHVMNGDYILFNRQPSLHRISLMAHRARVLPFRTFRFNECCCAPY 495

Query: 360 NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
           NADFDGDEMN+HV QTEEAR EA  LM   +N+ T KNGE ++A TQDFLT+++L+T +D
Sbjct: 496 NADFDGDEMNIHVVQTEEARAEAKELMLTSHNIITAKNGEPIIACTQDFLTAAYLVTARD 555

Query: 420 TFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTV 479
             +DRA+F+ M  +      +  LP PAILKP ELWTGKQLF +++RP    ++ +NL  
Sbjct: 556 ALFDRASFTQMVSHWLGNETQYTLPIPAILKPAELWTGKQLFELILRPTPETQLLLNLEA 615

Query: 480 KEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLL 539
           K + YS        D+        P +G+V F +S  +SG+L K  LG G KDGL++ L 
Sbjct: 616 KARFYSGA---GRHDD--------PAEGYVAFLDSVFLSGRLDKKLLGGGAKDGLFARLY 664

Query: 540 RDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKI 599
              G   T+ CM+R+A+ +AR++ N+GFS+G+ DV P   L++KK  +++ +++ C+  I
Sbjct: 665 ALGGGEQTATCMSRIAQFTARYLQNYGFSLGLGDVSPTPSLNEKKAAVLAVSFDKCDRLI 724

Query: 600 KEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR-NSPLIMSQCGSKG 658
                G+L  KPG    Q+LEA++   L+++R+  G A + +L  + N+PLIM   GSKG
Sbjct: 725 SLAKTGRLIPKPGMSVKQSLEAMLNAELSQVRDACGSAAVQALDAKSNAPLIMVNSGSKG 784

Query: 659 SPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEF 718
           S +N +QM+ACVGQQ+V G+R  N F DR+LPHFPR A++PA++GFVA+SFYSGLS TEF
Sbjct: 785 SALNTAQMMACVGQQTVSGKRIMNAFQDRALPHFPRFAEDPASRGFVASSFYSGLSPTEF 844

Query: 719 FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
           FFH M GREG+VDTAVKTA+TGY+ RRL KA+E+LS+ YD SVR+  G IVQ  YG+DGM
Sbjct: 845 FFHGMAGREGIVDTAVKTAETGYIYRRLSKAMENLSVGYDASVRSVQGSIVQLRYGEDGM 904

Query: 779 DPANMEGKSGEPLNFDRLLMKVKA 802
           DP  MEG  G PLN D+  +  +A
Sbjct: 905 DPWLMEGAHGTPLNLDQEWLSNRA 928



 Score =  278 bits (710), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 161/385 (41%), Positives = 231/385 (60%), Gaps = 34/385 (8%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T+  L  F++    +   K  E GT  GAI AQS+GEP TQMTL+TFHFAGVASM+ITQ
Sbjct: 1120 LTKGMLLHFLEASARKVHRKLCEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQ 1179

Query: 941  GVPRIKEIINGAKRISTPIITAELECND-------------NENAARVVKGRIEKTLLGQ 987
            GVPR+ EIIN  K I+TP+ITA +   D                AAR VKG +E+ LL +
Sbjct: 1180 GVPRLVEIINANKSIATPVITAPIVLEDEFTSIDLAPASRTQYQAARAVKGLMERVLLKE 1239

Query: 988  VAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIV------QTPKIKLKQQHI 1041
            +A+ +  V+T R   I I L+ME I+   L I+A +V + +        +P   L +  +
Sbjct: 1240 IAREMVEVVTPRAYYIHIFLNMELIERLLLPIDAAVVCQRLYAAAARPMSPLRHLSEACV 1299

Query: 1042 KVLDFRKLEIFP-PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKEN 1100
             V+    L +     D +++HF +  L  +LP ++V G+  V RV+IA++ +        
Sbjct: 1300 DVVSRDSLVVKSYEKDPARVHFNVQHLLTLLPDLVVGGVPGVNRVMIADRSE-------- 1351

Query: 1101 GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKA 1160
                  +LL EG  L +VM    +DG +T  NH+  +++ LGIEAAR  I+ EI   ++A
Sbjct: 1352 ------KLLAEGAELLSVMSLPYVDGVRTTCNHVAVIERALGIEAARETIVKEITSILQA 1405

Query: 1161 HGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRD 1220
            + ++ID RH+ LLAD+MT RG VLGITR+GIQKM+ +VL +ASFE+T +HL+NA++  R+
Sbjct: 1406 YSLNIDIRHIYLLADVMTSRGVVLGITRYGIQKMNNNVLTMASFERTTEHLYNAAMTERE 1465

Query: 1221 DRIEGVSECIIMGIPMPLGTGILKI 1245
            D    VSE II+G P+PLGT    I
Sbjct: 1466 DVNLSVSESIIIGKPIPLGTSSFNI 1490


>gi|398022082|ref|XP_003864203.1| DNA-directed RNA polymerase III largest subunit , putative
           [Leishmania donovani]
 gi|322502438|emb|CBZ37521.1| DNA-directed RNA polymerase III largest subunit , putative
           [Leishmania donovani]
          Length = 1590

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/804 (44%), Positives = 511/804 (63%), Gaps = 34/804 (4%)

Query: 17  SIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKV------------TESLQE 64
           +I+K     A K   C  CG +NG V++ V  + I+H++  V            T   QE
Sbjct: 141 AIIKGIQEDAYKTRVCLMCGGLNGTVRR-VRPMRIVHEKYLVDLRRGEQANEDPTAFFQE 199

Query: 65  -FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS--ERPEKLIITNIA 121
              SA  H  E  A        L+P  V  LF+ +      +L L     P  L+I+ + 
Sbjct: 200 ELRSAAMHNSEVGAHKEFVHEFLHPQRVKELFEAIPREQVPLLGLQPGTSPCSLLISTLL 259

Query: 122 VPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEV 181
           VPP+ +RP  +   +   E+D+T +   I+  +  +       N A +S+  WE LQ  V
Sbjct: 260 VPPVCVRPRGMSTTNHIREDDLTTQYNEILICSDMMSDG---TNDAARSVETWELLQTRV 316

Query: 182 AQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKI 241
           A+ +++ + G P  ++       + QR+KGKQGRFRGNLSGKRV+++GR+VISPDPNL+I
Sbjct: 317 ARLLDAALPGFPSHLRTVE-CKSYAQRMKGKQGRFRGNLSGKRVDFSGRSVISPDPNLRI 375

Query: 242 TEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTAR--VLYGKF 299
            E+A+P+R+AR+LTYP+RV   NI+ +R+ ++NGP  +PGA  +      +R  +   + 
Sbjct: 376 DELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGALTVYLSKECSRKSLRNARD 435

Query: 300 RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
           R  +A  L  G +V+RH+ +GD +LFNRQPSLHR+S+M HRAR++P+RT RFNE  C PY
Sbjct: 436 REAIAARLSIGDVVERHVMNGDYILFNRQPSLHRISLMAHRARVLPFRTFRFNECCCAPY 495

Query: 360 NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
           NADFDGDEMN+HV QTEEAR EA  LM   +N+ T KNGE ++A TQDFLT+++L+T +D
Sbjct: 496 NADFDGDEMNIHVVQTEEARAEAKELMLTSHNIITAKNGEPIIACTQDFLTAAYLVTARD 555

Query: 420 TFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTV 479
             +DRA+F+ M  +      +  LP PAILKP ELWTGKQLF +++RP    ++ +NL  
Sbjct: 556 ALFDRASFTQMVSHWLGNETQYTLPIPAILKPAELWTGKQLFELILRPTPETQLLLNLEA 615

Query: 480 KEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLL 539
           K + YS        D+        P +G+V F +S  +SG+L K  LG G KDGL++ L 
Sbjct: 616 KARFYSGA---GRHDD--------PAEGYVAFLDSVFLSGRLDKKLLGGGAKDGLFARLY 664

Query: 540 RDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKI 599
              G   T+ CM+R+A+ +AR++ N+GFS+G+ DV P   L++KK  +++ +++ C+  I
Sbjct: 665 ALGGGEQTATCMSRIAQFTARYLQNYGFSLGLGDVSPTPSLNEKKAAVLAVSFDKCDRLI 724

Query: 600 KEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR-NSPLIMSQCGSKG 658
                G+L  KPG    Q+LEA++   L+++R+  G A + +L  + N+PLIM   GSKG
Sbjct: 725 SLAKTGRLIPKPGMSVKQSLEAMLNAELSQVRDACGSAAVQALDAKSNAPLIMVNSGSKG 784

Query: 659 SPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEF 718
           S +N +QM+ACVGQQ+V G+R  N F DR+LPHFPR A++PA++GFVA+SFYSGLS TEF
Sbjct: 785 SALNTAQMMACVGQQTVSGKRIMNAFQDRALPHFPRFAEDPASRGFVASSFYSGLSPTEF 844

Query: 719 FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
           FFH M GREG+VDTAVKTA+TGY+ RRL KA+E+LS+ YD SVR+  G IVQ  YG+DGM
Sbjct: 845 FFHGMAGREGIVDTAVKTAETGYIYRRLSKAMENLSVGYDASVRSVQGSIVQLRYGEDGM 904

Query: 779 DPANMEGKSGEPLNFDRLLMKVKA 802
           DP  MEG  G PLN D+  +  +A
Sbjct: 905 DPWLMEGAHGTPLNLDQEWLSNRA 928



 Score =  277 bits (709), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 161/385 (41%), Positives = 231/385 (60%), Gaps = 34/385 (8%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T+  L  F++    +   K  E GT  GAI AQS+GEP TQMTL+TFHFAGVASM+ITQ
Sbjct: 1120 LTKGMLLHFLEASARKVHRKLCEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQ 1179

Query: 941  GVPRIKEIINGAKRISTPIITAELECND-------------NENAARVVKGRIEKTLLGQ 987
            GVPR+ EIIN  K I+TP+ITA +   D                AAR VKG +E+ LL +
Sbjct: 1180 GVPRLVEIINANKSIATPVITAPIVLEDEFTSIDLAPASRTQYQAARAVKGLMERVLLKE 1239

Query: 988  VAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIV------QTPKIKLKQQHI 1041
            +A+ +  V+T R   I I L+ME I+   L I+A +V + +        +P   L +  +
Sbjct: 1240 IAREMVEVVTPRAYYIHIFLNMELIERLLLPIDAAVVCQRLYAAAARPMSPLRHLSEACV 1299

Query: 1042 KVLDFRKLEIFP-PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKEN 1100
             V+    L +     D +++HF +  L  +LP ++V G+  V RV+IA++ +        
Sbjct: 1300 DVVSRDSLVVKSYEKDPARVHFNVQHLLTLLPDLVVGGVPGVNRVMIADRSE-------- 1351

Query: 1101 GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKA 1160
                  +LL EG  L +VM    +DG +T  NH+  +++ LGIEAAR  I+ EI   ++A
Sbjct: 1352 ------KLLAEGAELLSVMSLPYVDGVRTTCNHVAVIERALGIEAARETIVREITSILQA 1405

Query: 1161 HGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRD 1220
            + ++ID RH+ LLAD+MT RG VLGITR+GIQKM+ +VL +ASFE+T +HL+NA++  R+
Sbjct: 1406 YSLNIDIRHIYLLADVMTSRGVVLGITRYGIQKMNNNVLTMASFERTTEHLYNAAMTERE 1465

Query: 1221 DRIEGVSECIIMGIPMPLGTGILKI 1245
            D    VSE II+G P+PLGT    I
Sbjct: 1466 DVNLSVSESIIIGKPIPLGTSSFNI 1490


>gi|329765754|ref|ZP_08257323.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosoarchaeum
            limnia SFB1]
 gi|329137820|gb|EGG42087.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosoarchaeum
            limnia SFB1]
          Length = 1263

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1179 (35%), Positives = 657/1179 (55%), Gaps = 110/1179 (9%)

Query: 81   VATYILNPVNVLFLFKRMTDTDCEVLY---LSERPEKLIITNIAVPPIAIRPSVIMDGSQ 137
            +  + L P+ +   F ++ D D  +L    ++ RPE  I+  + VPP+ +RPS+I++   
Sbjct: 173  IGEHRLLPITIRERFSQIIDDDLHLLAYDPVTARPEWFILQALPVPPVTVRPSIILETGI 232

Query: 138  SNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ 197
             +E+D+T ++  II+ N  L++               + LQ     Y +++V G+P +  
Sbjct: 233  RSEDDLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHATTYFDNEVSGIPQAHH 292

Query: 198  -VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTY 256
               RPL    QRLKGK+GRFRG+LSGKRV+++ RTVISPDPNL ++EV +P ++A  LT 
Sbjct: 293  RSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLDLSEVGVPEQIAMKLTI 352

Query: 257  PERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA-RVLYGKFRNQLAVELKSGCIVDR 315
            PE V++ NIE++R  + NGP+K+PG   I  PDG   R+ + + R+ +A  L+ G +V+R
Sbjct: 353  PEIVTEWNIERMRTLVINGPNKFPGVNYIVRPDGVKIRLDFVEDRSTIAETLEIGYLVER 412

Query: 316  HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
            HL +GD+VLFNRQPSLH+MSIM H  R++P +T R + SVC PYNADFDGDEMN+HVPQ+
Sbjct: 413  HLANGDIVLFNRQPSLHQMSIMAHYVRVLPGKTFRLHPSVCPPYNADFDGDEMNLHVPQS 472

Query: 376  EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
            EEAR EA+LLM VQ+ L +P+ G  ++ + +DF+T ++L+T+ DT      F     Y  
Sbjct: 473  EEARAEAILLMRVQDQLISPRYGGPIIGALRDFVTGAYLLTKDDTLLTPQEF---YNYAM 529

Query: 436  DGMDRVDLPTPAIL-KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
             G      P P    K   ++TGKQLFS+ +    N   YV +T K   +S      + D
Sbjct: 530  LGGYNEKFPKPGSKNKDGPMYTGKQLFSLFLPKDFN---YV-ITSK---WSKGTKGAQKD 582

Query: 495  EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                          V  +N ELISG + K+++G    + +   + +DYG       +N +
Sbjct: 583  --------------VVIKNGELISGVIDKSSIGAEEPESVLHRIAKDYGNTKAKNFLNSI 628

Query: 555  AKLSARWIGNHGFSIGIDDVQ-PKKE----LSDKKGKLISENYEVCNVKIKEYNEGKLQL 609
              +  ++I ++GFS G  D++ P+KE    L D     I E Y V +    +Y +G L+L
Sbjct: 629  LIMVKQYITHYGFSYGYADLEVPEKEKQQILDD-----IQETYGVISDLTSQYEKGTLKL 683

Query: 610  KPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVAC 669
              G    + LEA I + L + R+ AG     SL   N+  IM+  G++GS +NI QM   
Sbjct: 684  TRGMKPEEALEAYIVNELGKARDKAGMTADQSLDQSNAGRIMATTGARGSALNIGQMAGA 743

Query: 670  VGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
            +GQQS  G R   G+ +R+LPH+      P A GFV +++  GLSA EFFFH MGGREGL
Sbjct: 744  LGQQSRRGSRLHAGYNNRALPHYQEHDNNPDAHGFVKSNYREGLSALEFFFHAMGGREGL 803

Query: 730  VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGE 789
            VDTAV+T  +GYM RRLI ALE + ++YD +VR+  G I+QFLYG+DG+D A  +   GE
Sbjct: 804  VDTAVRTQQSGYMQRRLINALEHIRLEYDGTVRDPHGHIIQFLYGEDGIDVAKSD--HGE 861

Query: 790  PLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQ 849
              N +RL                       I  + +   GK++  E   +  +K+ +   
Sbjct: 862  AFNINRL-----------------------IESQTIVDSGKKATKEEITDLAKKYTKTFN 898

Query: 850  DKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIG 909
             +L +    V D   D K             ++++  E+  +   S Y   +VE G A+G
Sbjct: 899  PRLKQ---LVTDGLLDSK-------------LSKEGAEIVCKKGLSLYNKAKVEPGQAVG 942

Query: 910  AIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDN 969
             I AQSIGEPGTQMTL+TFHFAG+A  N+T G+PR+ E+++  K+  TP +   L   DN
Sbjct: 943  IITAQSIGEPGTQMTLRTFHFAGIAERNVTLGLPRLIELVDARKKPVTPTMDIYL---DN 999

Query: 970  ENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIV 1029
            E+     K   EK +   VA++I   + +++++++   + +      L ++ + +KE   
Sbjct: 1000 ES-----KKSREKAI--DVARNI---LQTKVSALISDSETDYTTQIKLILSPNRLKERGC 1049

Query: 1030 QTPKIKLKQQHIKVLDFR---KLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVV 1086
               +++   Q  K        +L     V++S     + +++N +    VKG+  +ERV 
Sbjct: 1050 TVGEVEAALQSNKKFKMETTGELITLKLVEESDAP-TVIAIRNKVLNTTVKGVPDIERVT 1108

Query: 1087 IAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAA 1146
            + +K+ E            + +   G+ +  V+   GID    ++N++FE+  TLGIEA+
Sbjct: 1109 LVQKDDE------------WVIQTTGSNIAKVLEVSGIDKKNVRTNNVFEIAGTLGIEAS 1156

Query: 1147 RICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEK 1206
            R  +I+E+N T++  G+ +D R++ML++DLM  RG +  I R GI     SVL  A+FE 
Sbjct: 1157 RNALINELNNTLEDQGLEVDDRYIMLVSDLMCSRGYMQQIGRHGIAGTKDSVLARAAFEI 1216

Query: 1207 TADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            T   + +A++ G  ++++G++E +I+G  +P+G+G + +
Sbjct: 1217 TVPTIAHAALAGEVEQLKGITENVIVGSIIPIGSGTVDL 1255


>gi|386875147|ref|ZP_10117336.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosopumilus
            salaria BD31]
 gi|386807026|gb|EIJ66456.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosopumilus
            salaria BD31]
          Length = 1263

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1182 (35%), Positives = 657/1182 (55%), Gaps = 116/1182 (9%)

Query: 81   VATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQ 137
            +  + L P+ +   F ++ D D E+L     + RPE  I+  + VPP+ +RPS+I++   
Sbjct: 173  IGEHRLLPITIRERFSQILDEDLEILSYDPRTARPEWFILQALPVPPVTVRPSIILETGI 232

Query: 138  SNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ 197
             +E+D+T ++  II+ N  L++               + LQ     Y +++V G+P +  
Sbjct: 233  RSEDDLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHSTTYFDNEVSGIPQAHH 292

Query: 198  -VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTY 256
               RPL    QRLKGK+GRFRG+LSGKRV+++ RTVISPDPNL ++EV +P ++A  LT 
Sbjct: 293  RSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLDLSEVGVPEQVAMKLTI 352

Query: 257  PERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA-RVLYGKFRNQLAVELKSGCIVDR 315
            PE V++ NIE++R+ + NGP+K+PG   I  PDG   R+ + + R+ +A  L+ G +++R
Sbjct: 353  PEIVTEWNIERMRKLVINGPEKFPGVNYIVRPDGVKIRLDFVEDRSIIAESLEIGYLIER 412

Query: 316  HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
            HL DGD+V+FNRQPSLH+MSIM H  R++P +T R + SVC PYNADFDGDEMN+HVPQ+
Sbjct: 413  HLADGDIVMFNRQPSLHQMSIMAHYVRVLPGKTFRLHPSVCPPYNADFDGDEMNLHVPQS 472

Query: 376  EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
            EEAR EA+LLM VQ+ L +P+ G  ++ + +DF+T ++L+T+  T      FS +    G
Sbjct: 473  EEARAEAILLMRVQDQLISPRYGGPIIGALRDFVTGAYLLTKDGTTLSIQEFSNLAMLGG 532

Query: 436  DGMDRVDLPTPAI-LKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
                +  LP PA   K    +TGKQLFS+ +    N   YV LT K    +N        
Sbjct: 533  Y---KDALPKPATKTKDGPAYTGKQLFSLFLPKDFN---YV-LTSKWSKGTNG------- 578

Query: 495  EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                     P D  V  +N ELISG + K ++G    + +   + +DYG       +N +
Sbjct: 579  --------PPKD--VVIKNGELISGVIDKTSIGAEEPESVLHRITKDYGNAIGKNFLNSI 628

Query: 555  AKLSARWIGNHGFSIGIDDVQ-PKKE----LSDKKGKLISENYEVCNVKIKEYNEGKLQL 609
              +  ++I ++GFS G  D++ P+KE    L D +G      Y+V +    +Y++G L+L
Sbjct: 629  LIMVKQFITSYGFSYGFGDLEVPEKEKQQILDDIQG-----TYDVISDLTDQYDKGTLKL 683

Query: 610  KPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVAC 669
              G  A + LEA I + L + R+ AG     SL   N+  IM+  G++GS +N+ QM   
Sbjct: 684  TRGMKAEEALEAYIVNELGKARDKAGSTANDSLDNSNAGKIMATTGARGSSLNVGQMAGA 743

Query: 670  VGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
            +GQQS  G R  +G+ +R+L HF      P A GFV +++  GLSA EFFFH MGGREGL
Sbjct: 744  LGQQSRRGNRLHDGYQNRALTHFQEHDSNPDAHGFVKSNYREGLSALEFFFHAMGGREGL 803

Query: 730  VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGE 789
            VDTAV+T  +GYM RRLI ALE + ++YD +VR+  G IVQFLYG+DG+D    +   GE
Sbjct: 804  VDTAVRTQQSGYMQRRLINALEHIRLEYDGTVRDPHGHIVQFLYGEDGIDV--QKSDHGE 861

Query: 790  PLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCS---EAFLNSLRKFFE 846
              N  RL      T   +G++  +  ++  + +K    +     S   EA LN       
Sbjct: 862  AFNPSRLAE--SQTITDSGKK-ATKDEIEVLAKKYTKTFNPRLTSLVTEALLN------- 911

Query: 847  GQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGT 906
                                            S +++  +E   +   S Y   +VE G 
Sbjct: 912  --------------------------------SNLSKDGVEAVCKKGLSLYNKAKVEPGQ 939

Query: 907  AIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELEC 966
            A+G I AQSIGEPGTQMTL+TFHFAG+   N+T G+PR+ E+++  K+  TP  T ++  
Sbjct: 940  AVGIITAQSIGEPGTQMTLRTFHFAGIKERNVTLGLPRLIELVDARKKPVTP--TMDIYL 997

Query: 967  NDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKE 1026
            ++    +R      EK +  +VA++   V+ +++++++   + +      L ++ + +KE
Sbjct: 998  DEESKKSR------EKAI--EVARN---VLQTKVSALISNSETDYSTQITLILSPNRLKE 1046

Query: 1027 ---SIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVE 1083
               SI +        +  K+    +L     V++S     + +++N +    VKG+  +E
Sbjct: 1047 RGCSIAEVEASLASNKKFKMETTGELITLKLVEESDTA-TVIAIRNKVLNTTVKGVPDIE 1105

Query: 1084 RVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
            RV + +K+ E            + +   G+ +  V+  +GID    ++N++FE+  TLGI
Sbjct: 1106 RVTLVQKDDE------------WVIQTTGSNIAKVLEVKGIDKRNVRTNNVFEIAGTLGI 1153

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            EAAR  +IDE+N T+   G+ +D R++ML++DLM  RG +  I R GI     SVL  A+
Sbjct: 1154 EAARNSLIDELNNTLGDQGLEVDNRYIMLVSDLMCSRGYMQQIGRHGIAGTKDSVLARAA 1213

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            FE T   + +A++ G  + ++G++E +I+G  +P+G+G + +
Sbjct: 1214 FEITVPTIAHAALGGEIEHLKGITENVIVGSNIPIGSGTVDL 1255


>gi|393794932|ref|ZP_10378296.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
            Nitrosoarchaeum limnia BG20]
          Length = 1263

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1179 (35%), Positives = 657/1179 (55%), Gaps = 110/1179 (9%)

Query: 81   VATYILNPVNVLFLFKRMTDTDCEVLY---LSERPEKLIITNIAVPPIAIRPSVIMDGSQ 137
            +  + L P+ +   F ++ D D  +L    ++ RPE  I+  + VPP+ +RPS+I++   
Sbjct: 173  IGEHRLLPITIRERFSQIIDDDLHLLAYDPVTARPEWFILQALPVPPVTVRPSIILETGI 232

Query: 138  SNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ 197
             +E+D+T ++  II+ N  L++               + LQ     Y +++V G+P +  
Sbjct: 233  RSEDDLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHATTYFDNEVSGIPQAHH 292

Query: 198  -VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTY 256
               RPL    QRLKGK+GRFRG+LSGKRV+++ RTVISPDPNL ++EV +P ++A  LT 
Sbjct: 293  RSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLDLSEVGVPEQIAMKLTI 352

Query: 257  PERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA-RVLYGKFRNQLAVELKSGCIVDR 315
            PE V++ NIE++R+ + NGP+ +PG   I  PDG   R+ + + R+ +A  L+ G +V+R
Sbjct: 353  PEIVTEWNIERMRKLVINGPNTFPGVNYIVRPDGVKIRLDFVEDRSTIAETLEIGYLVER 412

Query: 316  HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
            HL +GD+VLFNRQPSLH+MSIM H  R++P +T R + SVC PYNADFDGDEMN+HVPQ+
Sbjct: 413  HLANGDIVLFNRQPSLHQMSIMAHYVRVLPGKTFRLHPSVCPPYNADFDGDEMNLHVPQS 472

Query: 376  EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
            EEAR EA+LLM VQ+ L +P+ G  ++ + +DF+T ++L+T+ DT      F     Y  
Sbjct: 473  EEARAEAILLMRVQDQLISPRYGGPIIGALRDFVTGAYLLTKDDTLLTPQEF---YNYAM 529

Query: 436  DGMDRVDLPTPAIL-KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
             G      P P    K   ++TGKQLFS+ +    N   YV +T K   +S      + D
Sbjct: 530  LGGYNEKFPKPGSKNKDGPMYTGKQLFSLFLPKDFN---YV-ITSK---WSKGTKGAQKD 582

Query: 495  EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                          V  +N ELISG + K+++G    + +   + +DYG       +N +
Sbjct: 583  --------------VVIKNGELISGVIDKSSIGAEEPESVLHRIAKDYGNTKAKNFLNSI 628

Query: 555  AKLSARWIGNHGFSIGIDDVQ-PKKE----LSDKKGKLISENYEVCNVKIKEYNEGKLQL 609
              +  ++I ++GFS G  D++ P+KE    L D     I E Y + +    +Y +G L+L
Sbjct: 629  LIMVKQYITHYGFSYGYADLEVPEKEKQQILDD-----IQETYGIISDLTSQYEKGTLKL 683

Query: 610  KPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVAC 669
              G    + LEA I + L + R+ AG     SL   N+  IM+  G++GS +NI QM   
Sbjct: 684  TRGMKPEEALEAYIVNELGKARDKAGMTADQSLDQSNAGRIMATTGARGSSLNIGQMAGA 743

Query: 670  VGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
            +GQQS  G R   G+ +R+LPH+      P A GFV +++  GLSA EFFFH MGGREGL
Sbjct: 744  LGQQSRRGSRLHAGYNNRALPHYQEHDNNPDAHGFVKSNYREGLSALEFFFHAMGGREGL 803

Query: 730  VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGE 789
            VDTAV+T  +GYM RRLI ALE + ++YD +VR+  G I+QFLYG+DG+D A  +   GE
Sbjct: 804  VDTAVRTQQSGYMQRRLINALEHIRLEYDGTVRDPHGHIIQFLYGEDGIDVAKSD--HGE 861

Query: 790  PLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQ 849
              N +RL                       I  + +   GK++  E   +  +K+ +   
Sbjct: 862  AFNINRL-----------------------IESQTIVDSGKKATKEEITDLAKKYTKTFN 898

Query: 850  DKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIG 909
             +L +    V D   D K             ++++  E+  +   S Y   +VE G A+G
Sbjct: 899  PRLKQ---LVTDGLLDSK-------------LSKEGAEIVCKKGLSLYNKAKVEPGQAVG 942

Query: 910  AIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDN 969
             I AQSIGEPGTQMTL+TFHFAG+A  N+T G+PR+ E+++  K+  TP +   L   DN
Sbjct: 943  IITAQSIGEPGTQMTLRTFHFAGIAERNVTLGLPRLIELVDARKKPVTPTMDIYL---DN 999

Query: 970  ENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIV 1029
            E+     K   EK +   VA++I   + +++++++   + +      L ++ + +KE   
Sbjct: 1000 ES-----KKSREKAI--DVARNI---LQTKVSALISDSETDYTTQIKLILSPNRLKERGC 1049

Query: 1030 QTPKIKLKQQHIKVLDFR---KLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVV 1086
               +++   Q  K        +L     V++S     + +++N +    VKG+  +ERV 
Sbjct: 1050 TVGEVEAALQSNKKFKMETTGELITLKLVEESDAP-TVIAIRNKVLNTTVKGVPDIERVT 1108

Query: 1087 IAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAA 1146
            + +K+ E            + +   G+ +  V+   GID    ++N++FE+  TLGIEA+
Sbjct: 1109 LVQKDDE------------WVIQTTGSNIAKVLEVSGIDKKNVRTNNVFEIAGTLGIEAS 1156

Query: 1147 RICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEK 1206
            R  +I+E+N T++  G+ +D R++ML++DLM  RG +  I R GI     SVL  A+FE 
Sbjct: 1157 RNALINELNNTLEDQGLEVDDRYIMLVSDLMCSRGYMQQIGRHGIAGTKDSVLARAAFEI 1216

Query: 1207 TADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            T   + +A++ G  ++++G++E +I+G  +P+G+G + +
Sbjct: 1217 TVPTIAHAALAGEVEQLKGITENVIVGSIIPIGSGTVDL 1255


>gi|326435508|gb|EGD81078.1| RNA polymerase III large subunit [Salpingoeca sp. ATCC 50818]
          Length = 1377

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/820 (46%), Positives = 507/820 (61%), Gaps = 54/820 (6%)

Query: 16  KSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD------RSKVTESLQEFASAI 69
           ++I+K+   +  K ++CP CG  N  VKK V  + I+H+       ++ T    E A+A 
Sbjct: 137 QAIIKEAGDLCKKTLRCPHCGAQNATVKK-VPPMKIVHELYVKKHEAERTRLHDELAAAA 195

Query: 70  THTKESKAAV--NVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAI 127
                 ++ +  + A  +LNP+ VL LF+ + D+DC +L L  RPE L++T+I  PP  I
Sbjct: 196 EEVDGLRSLLRQDRAQDVLNPLRVLELFRNIPDSDCLILDLGARPESLLLTSIICPPGCI 255

Query: 128 RPSVIMDGS--QSNENDITERL----KRIIQTNASLQQELVEANSAFKSLAGWETLQVEV 181
           RPSV+ D S   S+E+ I+  L    +   +  + L+   +      K +  WE LQ+  
Sbjct: 256 RPSVMRDASATSSSEDPISVSLTGLDRHRTRYASCLRLTCLCGQKLEKVMETWEQLQISS 315

Query: 182 AQYINSDVRGVPFSMQVAR-PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLK 240
           A   N  +  +   MQ  + P+ GF QRLKGKQGRFRGNLSGKRV ++GRTVISPDPN+ 
Sbjct: 316 AILYNGQLTNL---MQTQKKPIRGFFQRLKGKQGRFRGNLSGKRVNFSGRTVISPDPNVG 372

Query: 241 ITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFR 300
           + EV +P  + RILTYPE+V+ HN+EKLR+ + NGP  YPGA  +   +G  + L    R
Sbjct: 373 VDEVCVPYHVCRILTYPEQVTKHNLEKLRKMVLNGPKVYPGATTVELRNGDKKSLAFANR 432

Query: 301 NQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYN 360
             LA  L  G  V RHL +GD VLFNRQPSLHRMSIMCH+A+  PWRT RFNE VC PYN
Sbjct: 433 RNLARNLSIGDKVLRHLLEGDYVLFNRQPSLHRMSIMCHKAKPRPWRTFRFNECVCKPYN 492

Query: 361 ADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDT 420
           ADFDGDEMN+HVPQTEEAR EA  LM   NNLCTP NG+ L+A+TQDF+T ++L+T KD 
Sbjct: 493 ADFDGDEMNLHVPQTEEARAEAAELMLTTNNLCTPCNGKPLIAATQDFITGAYLLTTKDV 552

Query: 421 FYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVK 480
           F  R   + + CYMGDG   V LP P I+KP++LWTGKQ+ S+L++P+      + L   
Sbjct: 553 FLSRQDIAQLACYMGDGELLVHLPPPTIIKPMKLWTGKQVISLLLKPNKFDPTEIYLQAN 612

Query: 481 EKTYSNKLIRTE--GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL 538
            ++Y     + E  G   +  +T+CP DGFV  R S+L+SG L K  +G       Y++L
Sbjct: 613 NRSYDKDYAKQEFGGKPTLGEKTLCPEDGFVLIRKSQLLSGFLDKGIIGESKSSIFYALL 672

Query: 539 LRDYGAHATS---------------GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK 583
                   +S                CM RL+KL+ R++ N GFSIGI +       + +
Sbjct: 673 SSRLHPPLSSFISRVGILRCCVCGLQCMKRLSKLTTRFLMNRGFSIGIGEDGDGGGGAVR 732

Query: 584 KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLP 643
                      C   I++  +G ++ +PGC A QT+EA I   L+ IREDAG  C   LP
Sbjct: 733 -----------CKGYIQQLEKGNVECQPGCTAEQTVEAKIKQDLSAIREDAGLLCRQLLP 781

Query: 644 WRNSPLIMSQCGSKGSPI-----NISQMVACVGQQSVGGRRAPNGFIDRSLPHFP-RKAK 697
             N+P IM++CGSKGS I     ++ QM+ACVGQQ + G R P+GF  R LPHF   K++
Sbjct: 782 NSNAPKIMAKCGSKGSNIPSLRLHLRQMIACVGQQIINGERIPDGFDGRPLPHFKEEKSR 841

Query: 698 EPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQY 757
           EP A+GFV NSFY+GL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+KALEDLS +Y
Sbjct: 842 EPVARGFVENSFYTGLTPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLVKALEDLSARY 901

Query: 758 DNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           D +VRN+   I+QF YG+DGMDP   E  +  P++ +RL 
Sbjct: 902 DTTVRNSSNGIIQFCYGEDGMDPQFQETDNC-PVDLERLF 940



 Score =  248 bits (634), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 144/350 (41%), Positives = 201/350 (57%), Gaps = 18/350 (5%)

Query: 900  KRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPI 959
            +R  A T  GA+  ++    G Q T    H                +EIIN AK+ISTP+
Sbjct: 1010 RRCSAATGSGALHRRTRDNEGPQCTAGQSHIHVCMCDVCVCVC-VCQEIINAAKKISTPV 1068

Query: 960  ITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCI 1019
            I A LE  DN   AR VKGRIE   L +VA+ ++I  +   + + + LD++ I +  L I
Sbjct: 1069 IEAPLEEADNAAYARRVKGRIETITLEEVAEYVRIFCSDNESYVAVKLDLQRIANLFLEI 1128

Query: 1020 NADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK----IHFELYSLKNVLPMVI 1075
            +   V   IV   K+K+K   + +       ++P  D  K    +H  L +L+  L  V+
Sbjct: 1129 DVQGVVFRIVSDRKLKVKPNDVDIKSASLFHVYPRPDTRKPSNPVHL-LQALQQKLGTVV 1187

Query: 1076 VKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            V+G++ V R ++            N E   ++L ++GT ++ VM   G+ G K K NH+ 
Sbjct: 1188 VQGLENVNRAIV------------NDEGGVHKLFIDGTNMRGVMSTLGVLGEKVKCNHVM 1235

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            EV++TLGIEAAR  I+D++   M  +G+SID RH ML+ DLMTF+GEVLGITRFGI KM 
Sbjct: 1236 EVEKTLGIEAARQVIMDQVQYVMSNYGISIDPRHTMLMGDLMTFKGEVLGITRFGIAKMK 1295

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             SV MLASFEKT DHLF+A++ G  D IEGVSECII+G PM +GTG   +
Sbjct: 1296 DSVFMLASFEKTIDHLFDAAMRGTTDPIEGVSECIIVGKPMKVGTGAFSL 1345


>gi|407410320|gb|EKF32797.1| DNA-directed RNA polymerase III largest subunit, putative
            [Trypanosoma cruzi marinkellei]
          Length = 1629

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/823 (43%), Positives = 534/823 (64%), Gaps = 44/823 (5%)

Query: 1    MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVT- 59
            + + K++ L++  L+K+I K+    A K   C +CG +NG V++ V  L ++H++ +V  
Sbjct: 209  LSSTKLDPLQRAALVKTIQKE----AYKTRVCLKCGGLNGDVRR-VRPLRLVHEKYRVEP 263

Query: 60   ----ESLQ--------EFASAITHTK---ESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
                ES++        E  +A  + K   ESK  V+     L+P  V  LF  +   +  
Sbjct: 264  RRGEESVEGIETFFDYELRTACAYNKVVEESKENVH---EFLDPARVRQLFLAVPPDEVL 320

Query: 105  VLYLS--ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
            +L L     P  L++T + VPP+++RP      +   ++D+T +   I+ ++ +LQ   +
Sbjct: 321  LLGLQPGTSPVDLLVTTLLVPPVSVRPRGSSGTANIRDDDLTGQYNDILISSDTLQDGSI 380

Query: 163  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
            +A+   K    WE LQ+  A+ ++S + G P  M+ A  +  + QRLKGK GRFRGNLSG
Sbjct: 381  DAS---KYTETWEMLQMRAARLLDSALPGFPPHMRTA-DVKSYAQRLKGKHGRFRGNLSG 436

Query: 223  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
            KRV+++GR+VISPDPNL + E+A+P+R+AR+LTYP+RV   N+E +R+ ++NGP+ +PGA
Sbjct: 437  KRVDFSGRSVISPDPNLDVDELAVPLRVARVLTYPQRVFKSNLELMRRLVRNGPNVHPGA 496

Query: 283  RMIRYP-DGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
              +    +G+ + L + + R  L+  L  G +V+RH+ +GDVVLFNRQPSLHR+S+M HR
Sbjct: 497  VAVYLAQEGSKKSLNHERDRESLSARLSVGDVVERHVMNGDVVLFNRQPSLHRISMMAHR 556

Query: 341  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
            AR++P+RT RFNE  C PYNADFDGDEMN+H+ QTEEAR EA  LM    N+   KNGE 
Sbjct: 557  ARVLPFRTFRFNECCCAPYNADFDGDEMNVHLVQTEEARAEAFELMSTAKNIINAKNGEP 616

Query: 401  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
            ++A TQDFL +++L+T +D F+DR+  S M  +    + +  LP P ILKP ELWTGKQ+
Sbjct: 617  IIACTQDFLVAAYLVTSRDVFFDRSQMSWMVSHWLGPVTQFRLPIPTILKPTELWTGKQV 676

Query: 461  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
            F +++RP   + V +NL    K Y+ K     G  +      C  +G+V F +S  ISG+
Sbjct: 677  FELILRPSPEVNVLLNLEAATKFYTKK-----GRHD------CAAEGYVAFLDSHFISGR 725

Query: 521  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
            L K  LG G KDGL++ L    G   T+  M+R+A+ ++R++ N+GFS+G+ DV P   L
Sbjct: 726  LDKKLLGGGAKDGLFARLHTLAGGGYTARIMSRIAQFTSRYLTNYGFSLGLGDVAPTPLL 785

Query: 581  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
            +++K  +++ ++  C+  I+    G+++  PG    Q+LEA +   L+++R++ G A + 
Sbjct: 786  NEQKAAVLARSFATCDGLIESAKTGRMEPLPGLTVRQSLEARLNAELSKVRDECGTAAVE 845

Query: 641  SLPW-RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
            +L    N+PL+M Q GSKGS +NI+QM+ACVGQQ+V G+R  N F DRSLPHF R  + P
Sbjct: 846  ALSVDTNTPLMMVQSGSKGSALNIAQMMACVGQQTVSGKRILNAFQDRSLPHFYRFEEAP 905

Query: 700  AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
            +A+GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+KA+E+LS++YD 
Sbjct: 906  SARGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDG 965

Query: 760  SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA 802
            + RN  G +VQF +G+DG+DP  MEG  G PLN D+  +  +A
Sbjct: 966  TARNTRGDVVQFRFGEDGLDPQLMEGVGGTPLNLDQEWLSARA 1008



 Score =  276 bits (706), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 163/402 (40%), Positives = 236/402 (58%), Gaps = 44/402 (10%)

Query: 869  QILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTF 928
            +ILE++  +   +T   +  F+  C S+Y +K  E GT  GAI AQS+GEP TQMTL+TF
Sbjct: 1188 RILEKLQTELLPLTHGMITRFLAQCASKYILKACEPGTPCGAIAAQSVGEPSTQMTLRTF 1247

Query: 929  HFAGVASMNITQGVPRIKEIINGAKRISTPIITAELE------------------CNDN- 969
            HFAGVASM+ITQGVPR+ EIIN  + I+TP++TA +                   C ++ 
Sbjct: 1248 HFAGVASMSITQGVPRLVEIINANRNIATPVVTAPVRRQRQNNSLSIKQEVVGEGCEEDS 1307

Query: 970  ----ENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVK 1025
                E   R VK ++E+ +L +VA  I  V TS    + + L+M  I    L INA  V+
Sbjct: 1308 QEVFEKRVRRVKSQVERVMLKEVASEIVEVCTSTEFYLRVHLNMSLITKLCLPINAITVR 1367

Query: 1026 ESIV------QTPKIKLKQQHIKVLDFRKLEIFPP-VDKSKIHFELYSLKNVLPMVIVKG 1078
            + I+       +P   L+++ ++V+    L + P  ++ +++HF L  +  +LP V+V G
Sbjct: 1368 QRILAAAARPMSPLRLLREECVEVVSLDTLAVRPYFLEANRVHFNLRHVLALLPDVVVGG 1427

Query: 1079 IKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQ 1138
            I  + R +I+    E              +L EG  L+AVM    ++  +   NH+  V+
Sbjct: 1428 IAGINRAMISSNGGE--------------VLAEGAELRAVMNLPEVESTRVVCNHVAVVE 1473

Query: 1139 QTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSV 1198
            + LGIEAAR  I++EI   +KA+ +SID RH+ LLADLMT RG VLGITR+GIQKM+ +V
Sbjct: 1474 RVLGIEAARQVIVNEIQGILKAYSLSIDIRHIYLLADLMTQRGVVLGITRYGIQKMNFNV 1533

Query: 1199 LMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
            L +ASFE+T DHL+NA+   R D    VSE II+G P+PLGT
Sbjct: 1534 LTMASFERTTDHLYNAAATQRVDENLSVSESIIIGKPVPLGT 1575


>gi|407849768|gb|EKG04383.1| DNA-directed RNA polymerase III largest subunit, putative
           [Trypanosoma cruzi]
          Length = 1553

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/823 (43%), Positives = 534/823 (64%), Gaps = 44/823 (5%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVT- 59
           + + K+E L++  L+K+I ++    A K   C +CG +NG V++ V  L ++H++ +V  
Sbjct: 134 LSSTKLEPLQRAALVKTIQRE----AYKTRVCLKCGGLNGDVRR-VRPLRLVHEKYRVEP 188

Query: 60  ----ESLQ--------EFASAITHTK---ESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
               ES++        E  +A  + K   ESK  V+     L+P  V  +F  +   +  
Sbjct: 189 RRGEESVEGVETFFDYELRAACAYNKVVEESKENVH---EFLDPARVRQMFLAVPPDEVL 245

Query: 105 VLYL--SERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
           +L L     P  L++T + VPP+++RP      +   ++D+T +   I+ ++ +LQ   +
Sbjct: 246 LLGLLPGTSPVDLLVTTLLVPPVSVRPRGSSGTANIRDDDLTGQYNDILISSDTLQDGSI 305

Query: 163 EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 222
           +A+   K    WE LQ+  A+ ++S + G P  M+ A  +  + QRLKGK GRFRGNLSG
Sbjct: 306 DAS---KYTETWEMLQMRAARLLDSALPGFPPHMRTA-DVKSYAQRLKGKHGRFRGNLSG 361

Query: 223 KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 282
           KRV+++GR+VISPDPNL + E+A+P+R+AR+LTYP+RV   N+E +R+ ++NGP+ +PGA
Sbjct: 362 KRVDFSGRSVISPDPNLDVDELAVPLRVARVLTYPQRVFKSNLELMRRLVRNGPNVHPGA 421

Query: 283 RMIRYP-DGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
             +    +G+ + L + + R  L+  L  G +V+RH+ +GDVVLFNRQPSLHR+S+M HR
Sbjct: 422 VAVYLAQEGSKKSLNHERDRESLSARLSIGDVVERHVMNGDVVLFNRQPSLHRISMMAHR 481

Query: 341 ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 400
           AR++P+RT RFNE  C PYNADFDGDEMN+H+ QTEEAR EA  LM    N+   KNGE 
Sbjct: 482 ARVLPFRTFRFNECCCAPYNADFDGDEMNVHLVQTEEARAEAFELMSTAKNIINAKNGEP 541

Query: 401 LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 460
           ++A TQDFL +++L+T +D F+DR+  S M  +    + +  LP P ILKP ELWTGKQ+
Sbjct: 542 IIACTQDFLVAAYLVTSRDVFFDRSQMSWMVSHWLGPVTQFRLPIPTILKPTELWTGKQV 601

Query: 461 FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
           F +++RP   + V +NL    K Y+ K     G  +      C  +G+V F +S  ISG+
Sbjct: 602 FELILRPSPEVNVLLNLEAATKFYTKK-----GRHD------CAAEGYVAFLDSRFISGR 650

Query: 521 LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 580
           L K  LG G KDGL++ L    G   T+  M+R+A+ ++R++ N+GFS+G+ DV P   L
Sbjct: 651 LDKKLLGGGAKDGLFARLHTLSGGGYTARIMSRIAQFTSRYLTNYGFSLGLGDVAPTPLL 710

Query: 581 SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 640
           +++K  +++ ++  C+  I+    G+++  PG    Q+LEA +   L+++R++ G A + 
Sbjct: 711 NEQKAAVLARSFATCDSLIESAKTGRMEPLPGLTVRQSLEARLNAELSKVRDECGTAAVE 770

Query: 641 SLPW-RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
           +L    N+PL+M Q GSKGS +NI+QM+ACVGQQ+V G+R  N F DRSLPHF R  + P
Sbjct: 771 TLSVDTNTPLMMVQSGSKGSALNIAQMMACVGQQTVSGKRILNAFQDRSLPHFYRFEEAP 830

Query: 700 AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
           +A+GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+KA+E+LS++YD 
Sbjct: 831 SARGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDG 890

Query: 760 SVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA 802
           + RN  G +VQF +G+DG+DP  MEG  G PLN D+  +  +A
Sbjct: 891 TARNTRGDVVQFRFGEDGLDPQLMEGVGGTPLNLDQEWLSARA 933



 Score =  280 bits (715), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 165/402 (41%), Positives = 236/402 (58%), Gaps = 44/402 (10%)

Query: 869  QILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTF 928
            +ILE++  +   +T   +  F+  C S+Y +K  E GT  GAI AQS+GEP TQMTL+TF
Sbjct: 1112 RILEKLQTELLPLTYGMITRFLAQCASKYILKACEPGTPCGAIAAQSVGEPSTQMTLRTF 1171

Query: 929  HFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL------------------ECNDN- 969
            HFAGVASM+ITQGVPR+ EIIN  + I+TP++TA +                   C ++ 
Sbjct: 1172 HFAGVASMSITQGVPRLVEIINANRNIATPVVTAPVRRHRRGKSLSIKQEVVGESCEEDS 1231

Query: 970  ----ENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVK 1025
                E   R VK ++E+ LL +VA  I  V TS    + + L+M  I    L INA  V+
Sbjct: 1232 QEEFEKRVRRVKSQVERVLLKEVASEIVEVCTSNEFYLRVHLNMSLIAKLWLPINAITVR 1291

Query: 1026 ESIV------QTPKIKLKQQHIKVLDFRKLEIFPP-VDKSKIHFELYSLKNVLPMVIVKG 1078
            + I+       +P   L+++ ++V+    L + P  ++  ++HF L  +  +LP V+V G
Sbjct: 1292 QRILAAAARPMSPLRLLREECVEVVSLDTLAVRPYFLEAHRVHFNLRHVLALLPDVVVGG 1351

Query: 1079 IKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQ 1138
            I  + R +I+    E              +L EG  L+AVM   G++  +   NH+  V+
Sbjct: 1352 IAGINRAMISSNGAE--------------VLAEGAELRAVMNLPGVESTRVVCNHVAVVE 1397

Query: 1139 QTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSV 1198
            + LGIEAAR  I++EI   +KA+ +SID RH+ LLADLMT RG VLGITR+GIQKM+ +V
Sbjct: 1398 RVLGIEAARQVIVNEIQGILKAYSLSIDIRHIYLLADLMTQRGVVLGITRYGIQKMNFNV 1457

Query: 1199 LMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
            L +ASFE+T DHL+NA+   R D    VSE II+G P+PLGT
Sbjct: 1458 LTMASFERTTDHLYNAAATQRVDENLSVSESIIIGKPVPLGT 1499


>gi|71665443|ref|XP_819691.1| DNA-directed RNA polymerase III largest subunit [Trypanosoma cruzi
           strain CL Brener]
 gi|70885004|gb|EAN97840.1| DNA-directed RNA polymerase III largest subunit, putative
           [Trypanosoma cruzi]
          Length = 1553

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/820 (43%), Positives = 531/820 (64%), Gaps = 38/820 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVT- 59
           + + K+E L++  L+K+I ++    A K   C +CG +NG V++ V  L ++H++ +V  
Sbjct: 134 LSSTKLEPLQRAALVKTIQRE----AYKTRVCLKCGGLNGDVRR-VRPLRLVHEKYRVEP 188

Query: 60  ----ESLQ--------EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLY 107
               ES++        E  +A  + K  + +       L+P  V  +F  +   +  +L 
Sbjct: 189 RRGEESVEGVETFFDYELRAACAYNKVVEESKENVHEFLDPARVRQMFLAVPPDEVLLLG 248

Query: 108 L--SERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEAN 165
           L     P  L++T + VPP+++RP      +   ++D+T +   I+ ++ +LQ   ++A+
Sbjct: 249 LLPGTSPVDLLVTTLLVPPVSVRPRGSSGTANIRDDDLTGQYNDILISSDTLQDGSIDAS 308

Query: 166 SAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRV 225
              K    WE LQ+  A+ I+S + G P  M+ A  +  + QRLKGK GRFRGNLSGKRV
Sbjct: 309 ---KYTETWEMLQMRAARLIDSALPGFPPHMRTA-DVKSYAQRLKGKHGRFRGNLSGKRV 364

Query: 226 EYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI 285
           +++GR+VISPDPNL + E+A+P+R+AR+LTYP+RV   N+E +R+ ++NGP+ +PGA  +
Sbjct: 365 DFSGRSVISPDPNLDVDELAVPLRVARVLTYPQRVFKSNLELMRRLVRNGPNVHPGAVAV 424

Query: 286 RYP-DGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARI 343
               +G+ + L + + R  L+  L  G +V+RH+ +GDVVLFNRQPSLHR+S+M HRAR+
Sbjct: 425 YLAQEGSKKSLNHERDRESLSARLSIGDVVERHVMNGDVVLFNRQPSLHRISMMAHRARV 484

Query: 344 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVA 403
           +P+RT RFNE  C PYNADFDGDEMN+H+ QTEEAR EA  LM    N+   KNGE ++A
Sbjct: 485 LPFRTFRFNECCCAPYNADFDGDEMNVHLVQTEEARAEAFELMLTAKNIINAKNGEPIIA 544

Query: 404 STQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSV 463
            TQDFL +++L+T +D F+DR+  S M  +    + +  LP P ILKP ELWTGKQ+F +
Sbjct: 545 CTQDFLVAAYLVTSRDVFFDRSQMSWMVSHWLGPVTQFRLPIPTILKPTELWTGKQVFEL 604

Query: 464 LIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGK 523
           ++RP   + V +NL    K Y+ K     G  +      C  +G+V F +S  ISG+L K
Sbjct: 605 ILRPSPEVNVLLNLEAATKFYTKK-----GRHD------CAAEGYVAFLDSRFISGRLDK 653

Query: 524 ATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK 583
             LG G KDGL++ L    G   T+  M+R+A+ ++R++ N+GFS+G+ DV P   L+++
Sbjct: 654 KLLGGGAKDGLFARLHTLSGGGYTARIMSRIAQFTSRYLTNYGFSLGLGDVAPTPLLNEQ 713

Query: 584 KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLP 643
           K  +++ ++  C+  I+    G+++  PG    Q+LEA +   L+++R++ G A + +L 
Sbjct: 714 KAAVLARSFATCDSLIESAKTGRMEPLPGLTVRQSLEARLNAELSKVRDECGTAAVETLS 773

Query: 644 W-RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
              N+PL+M Q GSKGS +NI+QM+ACVGQQ+V G+R  N F DRSLPHF R  + P+A+
Sbjct: 774 VDTNTPLMMVQSGSKGSALNIAQMMACVGQQTVSGKRILNAFQDRSLPHFYRFEEAPSAR 833

Query: 703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
           GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+KA+E+LS++YD + R
Sbjct: 834 GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDGTAR 893

Query: 763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA 802
           N  G +VQF +G+DG+DP  MEG  G PLN D+  +  +A
Sbjct: 894 NTRGDVVQFRFGEDGLDPQLMEGVGGTPLNLDQEWLSARA 933



 Score =  276 bits (706), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 164/402 (40%), Positives = 235/402 (58%), Gaps = 44/402 (10%)

Query: 869  QILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTF 928
            +ILE++  +   +T   +  F+  C S+Y +K  E GT  GAI AQS+GEP TQMTL+TF
Sbjct: 1112 RILEKLQTELLPLTYGMITRFLAQCASKYILKACEPGTPCGAIAAQSVGEPSTQMTLRTF 1171

Query: 929  HFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL------------------ECNDN- 969
            HFAGVASM+ITQGVPR+ EIIN  + I+TP++TA +                   C ++ 
Sbjct: 1172 HFAGVASMSITQGVPRLVEIINANRNIATPVVTAPVRRHRRGKSLSIKQEVVGESCEEDS 1231

Query: 970  ----ENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVK 1025
                E   R VK ++E+ LL +VA  I  V TS    + + L+M  I    L INA  V+
Sbjct: 1232 QEEFEKRVRRVKSQVERVLLKEVASEIVEVCTSTEFYLRVHLNMSLIAKLWLPINAITVR 1291

Query: 1026 ESIV------QTPKIKLKQQHIKVLDFRKLEIFPP-VDKSKIHFELYSLKNVLPMVIVKG 1078
            + I+       +P   L+++ ++V+    L + P  ++  ++HF L  +  +LP V+V G
Sbjct: 1292 QRILAAAARPMSPLRLLREECVEVVSLDTLAVRPYFLEAHRVHFNLRHVLALLPDVVVGG 1351

Query: 1079 IKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQ 1138
            I  + R +I+    E              +L EG  L+AVM    ++  +   NH+  V+
Sbjct: 1352 IAGINRAMISSNGAE--------------VLAEGAELRAVMNLPEVESTRVVCNHVAVVE 1397

Query: 1139 QTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSV 1198
            + LGIEAAR  I++EI   +KA+ +SID RH+ LLADLMT RG VLGITR+GIQKM+ +V
Sbjct: 1398 RVLGIEAARQVIVNEIQGILKAYSLSIDIRHIYLLADLMTQRGVVLGITRYGIQKMNFNV 1457

Query: 1199 LMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
            L +ASFE+T DHL+NA+   R D    VSE II+G P+PLGT
Sbjct: 1458 LTMASFERTTDHLYNAAATQRVDENLSVSESIIIGKPVPLGT 1499


>gi|161527856|ref|YP_001581682.1| bifunctional DNA-directed RNA polymerase subunit A'/A''
            [Nitrosopumilus maritimus SCM1]
 gi|160339157|gb|ABX12244.1| DNA-directed RNA polymerase subunit A' [Nitrosopumilus maritimus
            SCM1]
          Length = 1263

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/1177 (34%), Positives = 654/1177 (55%), Gaps = 106/1177 (9%)

Query: 81   VATYILNPVNVLFLFKRMTDTDCEVLY---LSERPEKLIITNIAVPPIAIRPSVIMDGSQ 137
            +  + L P+ +   F ++ D D E+L    ++ RPE  ++    VPP+ +RPS+I++   
Sbjct: 173  IGEHRLLPITIRERFSQIIDEDLELLSYDPVTARPEWFVLQAFPVPPVTVRPSIILETGI 232

Query: 138  SNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ 197
             +E+D+T ++  II+ N  L++               + LQ     Y +++V G+P +  
Sbjct: 233  RSEDDLTHKMVDIIRVNQRLKESKDAGTPPLIVQDLVDLLQYHTTTYFDNEVSGIPQAHH 292

Query: 198  -VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTY 256
               RPL    QRLKGK+GRFRG+LSGKRV+++ RTVISPDPNL ++EV +P  +A  LT 
Sbjct: 293  RSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLDLSEVGVPEAVAMKLTI 352

Query: 257  PERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA-RVLYGKFRNQLAVELKSGCIVDR 315
            PE V++ NIE++R+ + NGP+K+PG   I  PDG   R+ + + R+ +A  L+ G +V+R
Sbjct: 353  PEIVTEWNIERMRKLVINGPEKFPGVNYIVRPDGVKIRLDFVEDRSTIAETLEIGYLVER 412

Query: 316  HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
            HL DGD+V+FNRQPSLH+MSIM H  R++P +T R + SVC PYNADFDGDEMN+HVPQ+
Sbjct: 413  HLADGDIVMFNRQPSLHQMSIMAHYVRVLPGKTFRLHPSVCPPYNADFDGDEMNLHVPQS 472

Query: 376  EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
            EEAR EA+LLM VQ+ L +P+ G  ++ + +DF+T ++L+T+ DT      FS +   +G
Sbjct: 473  EEARAEAILLMRVQDQLISPRYGGPIIGALRDFVTGAYLLTKDDTVLTVQEFSNLAM-LG 531

Query: 436  DGMDRVDLPTPAI-LKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
               D   LP P    K    +TGKQLFS+ +    N  +    +   K  +  ++     
Sbjct: 532  GYTD--PLPKPGTKTKDGPAYTGKQLFSLFLPKDFNYVITSKWSKGTKGQAKDVV----- 584

Query: 495  EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                             +N ELISG + K+++G    + +   + +DYG       +N +
Sbjct: 585  ----------------IKNGELISGVIDKSSIGAEEPESVLHRIAKDYGNAVGKSFLNSI 628

Query: 555  AKLSARWIGNHGFSIGIDD-VQPKKELSDKKGKL--ISENYEVCNVKIKEYNEGKLQLKP 611
              +  ++I ++GFS G  D + P K   DK+  L  I   Y++ +    +Y +G L+L  
Sbjct: 629  LIMVKQFITHYGFSYGYGDLIVPDK---DKQQILDDIQGTYDIVSDLTDQYKKGTLKLTR 685

Query: 612  GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
            G    + LEA I + L + R+ AG +    LP  N+  IM+  G++GS +N+ QM   +G
Sbjct: 686  GMKPEEALEAYIVNELGKARDKAGSSANDCLPADNAGKIMATTGARGSSLNVGQMAGALG 745

Query: 672  QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
            QQS  G R   G+ +R+L H+      P A GFV +++  GLSA EFFFH MGGREGLVD
Sbjct: 746  QQSRRGNRLHEGYNNRALTHYQEHDDNPDAHGFVKSNYREGLSALEFFFHAMGGREGLVD 805

Query: 732  TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL 791
            TAV+T  +GYM RRLI ALE + ++YD +VR+  G IVQFLYG+DG+D    +   GE  
Sbjct: 806  TAVRTQQSGYMQRRLINALEHIRLEYDGTVRDPHGHIVQFLYGEDGIDVQKSD--HGEAF 863

Query: 792  NFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDK 851
            N  RL                       I  +++   GK++  E      +K+ +    +
Sbjct: 864  NPSRL-----------------------IESQKIIDSGKKATKEEIETLAKKYTKTFNPR 900

Query: 852  LDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAI 911
            L    K V D               + S +++  +E   +     Y   +VE G A+G I
Sbjct: 901  L---TKLVTD-------------ALQNSELSKDGVEAVCKKGLLLYNKAKVEPGQAVGII 944

Query: 912  GAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNEN 971
             AQSIGEPGTQMTL+TFHFAG+   N+T G+PR+ E+++  K+  TP  T ++  +D   
Sbjct: 945  TAQSIGEPGTQMTLRTFHFAGIKERNVTLGLPRLIELVDARKKPVTP--TMDIYLDDESK 1002

Query: 972  AARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKE---SI 1028
             +R      EK +  +VA++   V+ +++++++   + +   +  L ++ + ++E   SI
Sbjct: 1003 KSR------EKAI--EVARN---VLQTKVSALIADSETDYATEIKLILSENRLRERGCSI 1051

Query: 1029 VQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIA 1088
             +        +  K+    +L     V++S     + +++N +    VKG+  +ERV + 
Sbjct: 1052 AEVEAALSSNKKFKMETTGELITLKLVEESDTA-TVIAIRNKVLNTTVKGVPDIERVTLV 1110

Query: 1089 EKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARI 1148
            +K+ E            + +   G+ +  V+  +GID    ++N++FE+  TLGIEAAR 
Sbjct: 1111 QKDDE------------WVIQTTGSNVAKVLEVKGIDKRNVRTNNVFEIAGTLGIEAARN 1158

Query: 1149 CIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTA 1208
             +I+E+N T++  G+ +D R++ML+ADLM  RG +  I R GI     SVL  A+FE T 
Sbjct: 1159 ALINELNSTLEDQGLEVDNRYIMLVADLMCSRGYMQQIGRHGIAGTKDSVLARAAFEITV 1218

Query: 1209 DHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
              + +A++ G  ++++G++E +I+G  +P+G+G + +
Sbjct: 1219 PTIAHAALGGEIEQLKGITENVIVGSNIPIGSGTVDL 1255


>gi|225459758|ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/1271 (35%), Positives = 672/1271 (52%), Gaps = 148/1271 (11%)

Query: 91   VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
            VL + KR++D DC +L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+D+T +L
Sbjct: 217  VLNVLKRISDEDCILLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQL 276

Query: 148  KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFV 206
              II+ N +L+++      A       + LQ  VA Y ++++ G P + Q   RP+    
Sbjct: 277  AMIIRHNENLRRQERNGAPAHIISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSIC 336

Query: 207  QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
             RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  LTYPE V+ +NIE
Sbjct: 337  SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIE 396

Query: 267  KLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDV 322
            +L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RHL DGD 
Sbjct: 397  RLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL--GYKVERHLNDGDF 454

Query: 323  VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA 382
            VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E 
Sbjct: 455  VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 514

Query: 383  LLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVD 442
            L LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D   ++ 
Sbjct: 515  LELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKI- 573

Query: 443  LPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETM 502
             P PAILKP  LWTGKQ+F+++I    N+      T    + S     T GD ++RIE  
Sbjct: 574  -PAPAILKPRPLWTGKQVFNLIIPKQINLL----RTSAWHSESETGFITPGDTQVRIE-- 626

Query: 503  CPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWI 562
                        EL++G L K TLG      L  V+  + G  A    +     L   W+
Sbjct: 627  ----------KGELLAGTLCKKTLGTST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 675

Query: 563  GNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAV 622
              +GFSIGI D        +K  + IS+        I+   E +L+ +PG    ++ E  
Sbjct: 676  LQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQLEAEPGRTMMESFENR 735

Query: 623  ITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPN 682
            +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R P 
Sbjct: 736  VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPY 795

Query: 683  GFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYM 742
            GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++TGY+
Sbjct: 796  GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 855

Query: 743  SRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL-----NFDRLL 797
             RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L      FDR+ 
Sbjct: 856  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVF 915

Query: 798  MKVKATCPPAGQRYLSPQQVSEI-------------VEK----------QLAAYGKESCS 834
             K +         Y+ P+ V ++             V+K          ++A  G  S  
Sbjct: 916  -KYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWP 974

Query: 835  EAFLNSLRKFFEGQQ---------------------DKLDKKIKFVEDIGWDD------- 866
               +N  R  +  Q+                     DKL +++K V     DD       
Sbjct: 975  MP-VNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPG---DDLISMEAQ 1030

Query: 867  -----------KSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQS 915
                       +S    +   K   +T +  E  I    SR+    V  G  IG + AQS
Sbjct: 1031 KNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1090

Query: 916  IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDNENAA 973
            IGEP TQMTL TFH+AGV++ N+T GVPR++EIIN AK+I TP ++  L  + +  +  A
Sbjct: 1091 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPDVSKTKERA 1150

Query: 974  RVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPK 1033
            + V+  +E T L  V ++ ++       S +I  D++ ++  +   + ++  E I  +P 
Sbjct: 1151 KNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEVAPEKI--SPW 1208

Query: 1034 IKLKQQHIKVLDFRKLEIFPPVDKSKIHFE------------------------------ 1063
            +   + + +++  +KL +    +K  + F+                              
Sbjct: 1209 LLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGE 1268

Query: 1064 -----------LYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKK-KYRLLV 1110
                       L  ++ N+L  + ++GI  + +V I   +  K    E  + + ++ L  
Sbjct: 1269 LQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKPEVEWMLDT 1328

Query: 1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
            EG  L AVM  E +D  +T SNH+ EV + LGIEA R  ++DE+   +   G  ++ RH+
Sbjct: 1329 EGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHL 1388

Query: 1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
             +L D MT+RG ++ ITR GI + D   +M  SFE+T D L +A+V    D + GV+E I
Sbjct: 1389 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDFLRGVTENI 1448

Query: 1231 IMGIPMPLGTG 1241
            ++G   P+GTG
Sbjct: 1449 MLGQLAPIGTG 1459


>gi|330040372|ref|XP_003239880.1| RNA polymerase III largest subunit [Cryptomonas paramecium]
 gi|327206805|gb|AEA38982.1| RNA polymerase III largest subunit [Cryptomonas paramecium]
          Length = 1298

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1262 (33%), Positives = 681/1262 (53%), Gaps = 114/1262 (9%)

Query: 10   RKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAI 69
            ++ + +K I+K    + +    C  C   NG+VKK +     IHD +        F  + 
Sbjct: 123  KEYNFIKHIIKIVQNIKTNT-NCVHCNSKNGIVKK-LGNFNFIHDVT--------FWQSF 172

Query: 70   THTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL---YLSERPEKLIITNIAVPPIA 126
             + K+    +     ILNP+    +F+++   D  ++    ++ RPE LI+T I VPP+ 
Sbjct: 173  ENKKKKPNLI-----ILNPLKAFRIFQKIGTNDLNLIGMEQINSRPENLILTYITVPPLT 227

Query: 127  IRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYIN 186
            IRPS+ +  + +NE+D+T +L  I   N  ++Q L+   +    +  W  LQ+E+++Y+N
Sbjct: 228  IRPSISVTETITNEDDLTLKLSDIQYFNLQIKQILLTGVNVKMLVENWNMLQIEISRYMN 287

Query: 187  SDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAI 246
            S++     + ++ +   G  QRLKGK+GRFRGNL GKRV++  RTVISPDPNL +  V I
Sbjct: 288  SEIFLTETNNKIHK---GLYQRLKGKKGRFRGNLGGKRVDFCARTVISPDPNLYLNYVGI 344

Query: 247  PIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVE 306
            P+++A  LT PE+V+  N E+L++ +  G  KYPGA  I   +G    +  +      + 
Sbjct: 345  PLQIALKLTLPEKVNKLNFERLQRSVYRGCYKYPGANFILNTEGNKICIQERNVFLKKIT 404

Query: 307  LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 366
            +K    ++RH++D D +LFNRQPSLHR+SIM HR +I+P +T + N   C PYNADFDGD
Sbjct: 405  IKENFRIERHIKDNDTILFNRQPSLHRVSIMSHRIKIVPNKTFKLNSCSCKPYNADFDGD 464

Query: 367  EMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 426
            EMN+HVPQT++AR+E+++LM +  N  TP+NGE+ ++ TQD L+ SFL+T ++ F+    
Sbjct: 465  EMNIHVPQTQKARSESMVLMNLALNTITPRNGELQISPTQDLLSLSFLMTSRNQFFSLET 524

Query: 427  FSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ-LFSVLIRPH------------ANMRV 473
            FS    Y+    D+ + P P+I+KPV+LWTGKQ  FS+L   H             ++ V
Sbjct: 525  FSNF--YISK--DKKNFPVPSIIKPVQLWTGKQVFFSILCINHDLSDEKKNRFYQPDINV 580

Query: 474  YVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDG 533
            + N    EKTYS        +++     +CP+DG+V F+  ELISG++GK ++G  N   
Sbjct: 581  FQN---TEKTYS-------LNKQQCSPFVCPHDGWVVFKKKELISGRIGKQSIGPNNS-- 628

Query: 534  LYSVLLRDYGAHATSGCMNRLAKLSA---RWIGNHGFSIGIDDVQPKKELSDKKGKLISE 590
             +S L      H+    +N ++K S    + I  +GFSIGIDDV P  +LS KK  +I  
Sbjct: 629  -FSFLYTLANLHSFCSIINSISKYSYIALKSISEYGFSIGIDDVIPNYKLSQKKKNIIRH 687

Query: 591  NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLI 650
            +Y +C            Q        +     I  IL+ +R+  GK+ + +  ++N+  +
Sbjct: 688  SYGLC------------QFIKRISVKENFHYKIYKILSTVRDTLGKSFLEAQSFKNNFSV 735

Query: 651  -MSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSL--PHFPRKAKEPAAKGFVAN 707
             M   GSKGS +N++QM++CVGQQS+          +R L    +      P   GF+  
Sbjct: 736  NMVTSGSKGSMVNLAQMISCVGQQSIKNNYIHYSTFNRILVSSKYNYLKFTPEDDGFIVY 795

Query: 708  SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
            SF  GL+   FF HTM GREGL+DTA+KTA TGY+ RRLIK LED+   YD S R A G 
Sbjct: 796  SFQEGLTNKNFFLHTMAGREGLIDTAIKTAQTGYIQRRLIKFLEDIVCSYDFSTRTADGR 855

Query: 768  IVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAA 827
            +++F  G+   +P  M+      LN  +L               ++  ++S      L+ 
Sbjct: 856  LIRFKLGETNFEP--MKNIWFFSLNCTQL---------------INLDKISSTTFSMLSF 898

Query: 828  YGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLE 887
            +  +S S+AF      FF+ +        +      +     I      K   I  K  +
Sbjct: 899  FEIDSLSKAF-----DFFDTENILYLNNFRNFFFTFYTKYFIIYNGYFTKVDLIFRKISK 953

Query: 888  VFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKE 947
            +F+ +C +       + G+ +GA   QSIGEP TQ+TL+TFH AG++  NIT G  RI E
Sbjct: 954  IFL-SCLT-------DPGSPVGAEAGQSIGEPSTQLTLQTFHSAGISDTNITLGTCRINE 1005

Query: 948  IINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIAL 1007
            I+N +K I+ P    +L  +  ++    +K  ++   L  + + IKI + +      I L
Sbjct: 1006 ILNASKTINFPTTKIQLTTSIKKHILG-IKKLLKGFSLKNICEVIKITLKANKLKCDIKL 1064

Query: 1008 DMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIF---PPVDKSKIHFEL 1064
            ++         I  + +K+ I      ++K + +      KL+IF           HF+L
Sbjct: 1065 NLNEFLFICKLIELNEIKKKI---KNYQIKSKFVMKKTKNKLKIFFYNSSFTCKFTHFKL 1121

Query: 1065 YSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGI 1124
              L N     +      V+  +      +KR + +   KK    +++G+ L ++     +
Sbjct: 1122 MKLINFCKNHL------VDLPLNKSLTPDKRLISQ--YKKNPEFILKGSNLMSLANFSFV 1173

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
            +     SNHIF+  +TLGIEAAR  I+ E+    +A+G+ I+K+H+ LL+DLMTF+GE+L
Sbjct: 1174 NQKTIYSNHIFDTVKTLGIEAARSVIVIELEIIFEAYGIKINKKHLSLLSDLMTFQGEIL 1233

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
            GITR+G+ K+  + L+LASFEKT ++LF +++    D++ GVSE II+G  +P+GTG++ 
Sbjct: 1234 GITRYGLAKIKSNTLVLASFEKTVENLFTSAIKISKDQVCGVSENIILGKEIPIGTGLVS 1293

Query: 1245 IR 1246
            ++
Sbjct: 1294 LQ 1295


>gi|118576747|ref|YP_876490.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
            [Cenarchaeum symbiosum A]
 gi|118195268|gb|ABK78186.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
            [Cenarchaeum symbiosum A]
          Length = 1260

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1171 (35%), Positives = 650/1171 (55%), Gaps = 107/1171 (9%)

Query: 86   LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
            L P+ +   F ++T+ D  +L     + RPE  I+  + VPP+ +RPS+I++    +E+D
Sbjct: 178  LLPITIREKFSQITNEDLVLLGYDPATARPEWFILQALPVPPVTVRPSIILETGIRSEDD 237

Query: 143  ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARP 201
            +T ++  II+ N  L++               + LQ     Y ++++ G+P +     RP
Sbjct: 238  LTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHATTYFDNEISGIPQAHHRSGRP 297

Query: 202  LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
            L    QRLKGK+GRFRG+LSGKRV+++ RTVISPDPNL ++EV +P  +A  LT PE V+
Sbjct: 298  LKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLDLSEVGVPESVAMKLTIPEIVT 357

Query: 262  DHNIEKLRQCIQNGPDKYPGARMIRYPDGTA-RVLYGKFRNQLAVELKSGCIVDRHLEDG 320
            + NI ++++ + NGPD YPG   I  PDG   R+ + + R+ +A  L+ G +++RHL DG
Sbjct: 358  EWNIARMKELVVNGPDHYPGVNYIVRPDGVKIRLDFVEDRSTIADTLEMGYLIERHLLDG 417

Query: 321  DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
            D+V+FNRQPSLH+MSIM H  R++P +T R + SVC PYNADFDGDEMN+HVPQ+EEAR 
Sbjct: 418  DIVMFNRQPSLHQMSIMAHHVRVLPGKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARA 477

Query: 381  EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
            EA+LLM VQ+ L +P+ G  ++   +DF+T S+L+T+ DT   R  F+ +   +GD    
Sbjct: 478  EAMLLMRVQDQLISPRYGGPIIGGLRDFITGSYLLTKDDTTLTREEFTNLAM-LGDYGGA 536

Query: 441  VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
              LP P      +L+TGKQLFS+ +    N   Y+  +   K        T+G       
Sbjct: 537  --LPKPGAKG--QLFTGKQLFSLFLPKDFN---YIITSKWSKG-------TKG------- 575

Query: 501  TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
               P D  V  +N ELISG + K+++G    + +   + +DYG       +N +  ++ +
Sbjct: 576  --TPKD--VVIKNGELISGVIDKSSIGAEEPESVLHRIAKDYGNAPAKKFLNSVLIIAKQ 631

Query: 561  WIGNHGFSIGIDDVQ----PKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
            +I ++GFS G  D++     +KE+ D     I  +Y+     I +  +G L+L  G    
Sbjct: 632  FITHYGFSYGYADLELPEKARKEIFDD----IGASYDKVYGYIADAKKGGLRLTRGLSPD 687

Query: 617  QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
            + LEA I   L+R R+ AG     S    N+  IM+  G++GS +NI QM   +GQQS  
Sbjct: 688  EALEAYIVSELSRARDTAGGIADQSFDHTNAGKIMASTGARGSSLNIGQMAGSLGQQSRR 747

Query: 677  GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
            G+R   G+ +R+LPHF      P A GFV +++  GLSA EFFFH M GREGLVDTAV+T
Sbjct: 748  GQRLLKGYNNRALPHFRENDDSPDAHGFVKSNYRDGLSALEFFFHAMAGREGLVDTAVRT 807

Query: 737  ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
              +GYM RRLI ALE + ++YDN+VR+  G I+QFLYG+DG+D A  +   GE  N  RL
Sbjct: 808  QQSGYMQRRLINALEHIRLEYDNTVRDPHGHIIQFLYGEDGIDVAKSD--HGEAFNVHRL 865

Query: 797  LMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKI 856
            +          G++  +P +++EI +K    Y K      F   +++   G         
Sbjct: 866  IE--SQMIVDTGKKATAP-EIAEIAKK----YAK-----TFNPRMKEIVTGA-------- 905

Query: 857  KFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSI 916
                          L E      G++++  E   +     Y   +VE G A+G + AQSI
Sbjct: 906  --------------LAEC-----GLSKEGAEKVGKKGLDLYNKAKVEPGQAVGIVTAQSI 946

Query: 917  GEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVV 976
            GEPGTQMTL+TFHFAG+   N+T G+PR+ E+++  K+  TP +   L+     +  R +
Sbjct: 947  GEPGTQMTLRTFHFAGIKERNVTLGLPRLIELVDARKKPVTPTMDIHLDGESKGSRDRAI 1006

Query: 977  KGRIEKTLL-GQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIK 1035
            +  I K +L  +++  I  + T     I + LD E   D   C   D V  ++    K K
Sbjct: 1007 E--IAKNVLQTKISALIADMDTDYSTQIRLGLD-EGKMDDRGC-TPDDVAAALASNKKFK 1062

Query: 1036 LKQQHIKV-LDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEK 1094
            +  +  ++ LD  +    P V          +++N +    VKG+  VER+ + +K+ E 
Sbjct: 1063 VSVEGRRLTLDMAEEYDAPAV---------IAVRNKVLNTTVKGVPDVERLTLVQKDDE- 1112

Query: 1095 RKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEI 1154
                       + +   G+ L  V+  EGID  + ++N++FE+  TLGIEAAR  +I+E+
Sbjct: 1113 -----------WVIQTTGSNLPKVLAVEGIDKRQVRTNNVFEIAGTLGIEAARNALINEL 1161

Query: 1155 NETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA 1214
              T++  G+ +D R++ML++DLM  RG +  I R GI     SVL  A+FE T   + +A
Sbjct: 1162 RSTLEDQGLEVDIRYIMLVSDLMCSRGYMQQIGRHGIAGTKDSVLARAAFEITVPTIAHA 1221

Query: 1215 SVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            +++G  + + GV+E +I+G  +P+G+G + +
Sbjct: 1222 ALSGEVEHLRGVTENVIVGSNIPIGSGTVDL 1252


>gi|261332267|emb|CBH15261.1| DNA-directed RNA polymerase iii largest subunit [Trypanosoma brucei
           gambiense DAL972]
          Length = 1530

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/820 (43%), Positives = 525/820 (64%), Gaps = 38/820 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
           + +  +E L++T L+K+I     T A K   C +CG +NG+V++ V  + ++H++  V  
Sbjct: 134 LSSSSLEPLQRTMLIKTI----QTDAYKTRVCLKCGGLNGVVRR-VRPMRLVHEKYHVEP 188

Query: 61  SL-------------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLY 107
                           E  +A  + K            L+PV V  LF  +   +  +L 
Sbjct: 189 RRGEGPRENPGGFFDAELRTACAYNKVVGECREFVHDFLDPVRVRQLFLAVPPGEVILLG 248

Query: 108 LSE--RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEAN 165
           L+    P  L++T + VPP+ +RP      +   ++D+T +   I+ +  ++Q   ++A 
Sbjct: 249 LAPGVSPTDLLMTTLLVPPVPVRPRGCAGTTTVRDDDLTAQYNDILVSTDTMQDGSLDAT 308

Query: 166 SAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRV 225
              ++   WE LQ+  A+ ++S + G P +++ +  L  + QRLK K GRFR NLSGKRV
Sbjct: 309 RYTET---WEMLQMRAARLLDSSLPGFPPNVRTS-DLKSYAQRLKSKHGRFRCNLSGKRV 364

Query: 226 EYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI 285
           +Y+GR+VISPDPNL + E+A+P+ +AR+LTYP+RV   N E +R+ ++NGP  +PGA  +
Sbjct: 365 DYSGRSVISPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPGATTV 424

Query: 286 RYP-DGTARVLYG-KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARI 343
               +G+ + L   + R++LA  L  G IV+RH+ +GD+VLFNRQPSLHR+S+M HRAR+
Sbjct: 425 YLAQEGSKKSLKNERDRHRLAARLAVGDIVERHVMNGDLVLFNRQPSLHRVSMMAHRARV 484

Query: 344 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVA 403
           +P+RT RFNE  C PYNADFDGDEMN+H  QTE+AR EAL LM    N+ + KNGE ++A
Sbjct: 485 LPFRTFRFNECCCAPYNADFDGDEMNVHFVQTEKARAEALQLMSTARNIISAKNGEPIIA 544

Query: 404 STQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSV 463
            TQDFL +++L+T +D F+DR  FS M  +    + +  LP PAILKPVELWTGKQLF +
Sbjct: 545 CTQDFLAAAYLVTSRDVFFDRGEFSQMVSHWLGPVTQFRLPIPAILKPVELWTGKQLFEL 604

Query: 464 LIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGK 523
           ++RP   + V ++     K Y+ K     G  +      C  +G+V F +S  ISG+L K
Sbjct: 605 IVRPSPEVDVLLSFEAPTKFYTRK-----GKHD------CAEEGYVAFLDSCFISGRLDK 653

Query: 524 ATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK 583
             LG G KDGL++ L    G   T+  M+R+A+ ++R++ N+GFS+G+ DV P  EL+ +
Sbjct: 654 KLLGGGAKDGLFARLHTIAGGGYTARVMSRIAQFTSRYLTNYGFSLGLGDVAPTPELNKQ 713

Query: 584 KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLP 643
           K  +++ + EVC+  IK    G++   PG    Q+LEA +   L+++R++ G A + +L 
Sbjct: 714 KAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLEARLNTELSKVRDECGTAAVQTLS 773

Query: 644 -WRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
              N+PLIM Q GSKGS +NI+QM+ACVGQQ+V G+R  + F DRSLPHF R  + PAA+
Sbjct: 774 IHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDRSLPHFHRFEEAPAAR 833

Query: 703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
           GFVANSFYSGLS TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+KA+E+LS++YD +VR
Sbjct: 834 GFVANSFYSGLSPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDGTVR 893

Query: 763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA 802
           N  G ++Q  +G+DG+DP  MEG SG PLN ++  + V+A
Sbjct: 894 NTKGDVIQLRFGEDGLDPQLMEGNSGTPLNLEQEWLSVRA 933



 Score =  291 bits (744), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 171/401 (42%), Positives = 234/401 (58%), Gaps = 29/401 (7%)

Query: 855  KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQ 914
            K+K  ++ G   + + LE +  +   +T   +  FI  C S+Y  K  E GT  GAI AQ
Sbjct: 1092 KVKDSKEEGRVSELRDLEMLQTELLPLTRGMVTRFIAQCASKYLRKACEPGTPCGAIAAQ 1151

Query: 915  SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITA--------ELEC 966
            S+GEP TQMTL+TFHFAGVASM+ITQGVPR+ E+IN  + I+TP++TA        E  C
Sbjct: 1152 SVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEVINANRNIATPVVTAPVLLMEGEENHC 1211

Query: 967  NDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKE 1026
                  AR VK +IE+ LL +V   I  V +     + + L+M  I   HL INA  V++
Sbjct: 1212 EIFRKRARFVKAQIERVLLREVVSEIVEVCSDTEFYLRVHLNMSVITKLHLPINAITVRQ 1271

Query: 1027 SIV------QTPKIKLKQQHIKVLDFRKLEIFPPV-DKSKIHFELYSLKNVLPMVIVKGI 1079
             I+       +P   L +  I+V     L ++P   D   +HF L  +  +LP V+V GI
Sbjct: 1272 RILAAAGHTMSPLRMLNEDCIEVFSLDTLAVYPHFQDARWVHFSLRRILGLLPDVVVGGI 1331

Query: 1080 KTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQ 1139
              + R +I+    E              +L EG  L+AVM   G+D  +   NH+  V++
Sbjct: 1332 GGINRAMISSNGTE--------------VLAEGAELRAVMNLWGVDSTRVICNHVAVVER 1377

Query: 1140 TLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVL 1199
             LGIEAAR  I+DEI   +KA+ +SID RH+ LLADLMT RG VLGITR+GIQKM+ +VL
Sbjct: 1378 VLGIEAARRVIVDEIQNILKAYSLSIDVRHVYLLADLMTQRGVVLGITRYGIQKMNFNVL 1437

Query: 1200 MLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
             +ASFE+T DHL+NA+   R DR   VS+ II+G P+PLGT
Sbjct: 1438 TMASFERTTDHLYNAAATQRVDRDLSVSDSIIVGKPVPLGT 1478


>gi|71746952|ref|XP_822531.1| DNA-directed RNA polymerase III largest subunit [Trypanosoma
           brucei]
 gi|70832199|gb|EAN77703.1| DNA-directed RNA polymerase III largest subunit [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 1530

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/820 (43%), Positives = 525/820 (64%), Gaps = 38/820 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
           + +  +E L++T L+K+I     T A K   C +CG +NG+V++ V  + ++H++  V  
Sbjct: 134 LSSSSLEPLQRTMLIKTI----QTDAYKTRVCLKCGGLNGVVRR-VRPMRLVHEKYHVEP 188

Query: 61  SL-------------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLY 107
                           E  +A  + K            L+PV V  LF  +   +  +L 
Sbjct: 189 RRGEGPRENPGGFFDAELRTACAYNKVVGECREFVHDFLDPVRVRQLFLAVPPGEVILLG 248

Query: 108 LSE--RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEAN 165
           L+    P  L++T + VPP+ +RP      +   ++D+T +   I+ +  ++Q   ++A 
Sbjct: 249 LAPGVSPTDLLMTTLLVPPVPVRPRGCAGTTTVRDDDLTAQYNDILVSTDTMQDGSLDAT 308

Query: 166 SAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRV 225
              ++   WE LQ+  A+ ++S + G P +++ +  L  + QRLK K GRFR NLSGKRV
Sbjct: 309 RYTET---WEMLQMRAARLLDSSLPGFPPNVRTS-DLKSYAQRLKSKHGRFRCNLSGKRV 364

Query: 226 EYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI 285
           +Y+GR+VISPDPNL + E+A+P+ +AR+LTYP+RV   N E +R+ ++NGP  +PGA  +
Sbjct: 365 DYSGRSVISPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPGATTV 424

Query: 286 RYP-DGTARVLYG-KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARI 343
               +G+ + L   + R++LA  L  G IV+RH+ +GD+VLFNRQPSLHR+S+M HRAR+
Sbjct: 425 YLAQEGSKKSLKNERDRHRLAARLAVGDIVERHVMNGDLVLFNRQPSLHRVSMMAHRARV 484

Query: 344 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVA 403
           +P+RT RFNE  C PYNADFDGDEMN+H  QTE+AR EAL LM    N+ + KNGE ++A
Sbjct: 485 LPFRTFRFNECCCAPYNADFDGDEMNVHFVQTEKARAEALQLMSTARNIISAKNGEPIIA 544

Query: 404 STQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSV 463
            TQDFL +++L+T +D F+DR  FS M  +    + +  LP PAILKPVELWTGKQLF +
Sbjct: 545 CTQDFLAAAYLVTSRDVFFDRGEFSQMVSHWLGPVTQFRLPIPAILKPVELWTGKQLFEL 604

Query: 464 LIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGK 523
           ++RP   + V ++     K Y+ K     G  +      C  +G+V F +S  ISG+L K
Sbjct: 605 IVRPSPEVDVLLSFEAPTKFYTRK-----GKHD------CAEEGYVAFLDSCFISGRLDK 653

Query: 524 ATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK 583
             LG G KDGL++ L    G   T+  M+R+A+ ++R++ N+GFS+G+ DV P  EL+ +
Sbjct: 654 KLLGGGAKDGLFARLHTIAGGGYTARVMSRIAQFTSRYLTNYGFSLGLGDVAPTPELNKQ 713

Query: 584 KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLP 643
           K  +++ + EVC+  IK    G++   PG    Q+LEA +   L+++R++ G A + +L 
Sbjct: 714 KAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLEARLNTELSKVRDECGTAAVQTLS 773

Query: 644 -WRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
              N+PLIM Q GSKGS +NI+QM+ACVGQQ+V G+R  + F DRSLPHF R  + PAA+
Sbjct: 774 IHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDRSLPHFHRFEEAPAAR 833

Query: 703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
           GFVANSFYSGLS TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+KA+E+LS++YD +VR
Sbjct: 834 GFVANSFYSGLSPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDGTVR 893

Query: 763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA 802
           N  G ++Q  +G+DG+DP  MEG SG PLN ++  + V+A
Sbjct: 894 NTKGDVIQLRFGEDGLDPQLMEGNSGTPLNLEQEWLSVRA 933



 Score =  291 bits (744), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 174/419 (41%), Positives = 239/419 (57%), Gaps = 34/419 (8%)

Query: 855  KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQ 914
            K+K  ++ G   + + LE +  +   +T   +  FI  C S+Y  K  E GT  GAI AQ
Sbjct: 1092 KVKDSKEGGRVSELRDLEMLQTELLPLTRGMVTRFIAQCASKYLRKACEPGTPCGAIAAQ 1151

Query: 915  SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITA--------ELEC 966
            S+GEP TQMTL+TFHFAGVASM+ITQGVPR+ E+IN  + I+TP++TA        E  C
Sbjct: 1152 SVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEVINANRNIATPVVTAPVLLMEGEENHC 1211

Query: 967  NDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKE 1026
                  AR VK +IE+ LL +V   I  V +     + + L+M  I   HL INA  V++
Sbjct: 1212 EIFRKRARFVKAQIERVLLREVVSEIVEVCSDTEFYLRVHLNMSVITKLHLPINAITVRQ 1271

Query: 1027 SIV------QTPKIKLKQQHIKVLDFRKLEIFPPV-DKSKIHFELYSLKNVLPMVIVKGI 1079
             I+       +P   L +  I+V     L ++P   D   +HF L  +  +LP V+V GI
Sbjct: 1272 RILAAAGHTMSPLRMLNEDCIEVFSLDTLAVYPHFQDARWVHFSLRRILGLLPDVVVGGI 1331

Query: 1080 KTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQ 1139
              + R +I+    E              +L EG  L+AVM   G+D  +   NH+  V++
Sbjct: 1332 GGINRAMISSNGTE--------------VLAEGAELRAVMNLWGVDSTRVVCNHVAVVER 1377

Query: 1140 TLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVL 1199
             LGIEAAR  I+DEI   +KA+ +SID RH+ LLADLMT RG VLGITR+GIQKM+ +VL
Sbjct: 1378 VLGIEAARRVIVDEIQNILKAYSLSIDVRHVYLLADLMTQRGVVLGITRYGIQKMNFNVL 1437

Query: 1200 MLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIR-----QRDAVPP 1253
             +ASFE+T DHL+NA+   R DR   VS+ II+G P+PLGT    +        D +PP
Sbjct: 1438 TMASFERTTDHLYNAAATQRVDRDLSVSDSIIVGKPVPLGTTSFDLLLDGSISNDVLPP 1496


>gi|162223|gb|AAA30233.1| RNA polymerase III [Trypanosoma brucei]
          Length = 1530

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/820 (43%), Positives = 525/820 (64%), Gaps = 38/820 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
           + +  +E L++T L+K+I     T A K   C +CG +NG+V++ V  + ++H++  V  
Sbjct: 134 LSSSSLEPLQRTMLIKTI----QTDAYKTRVCLKCGGLNGVVRR-VRPMRLVHEKYHVEP 188

Query: 61  SL-------------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLY 107
                           E  +A  + K            L+PV V  LF  +   +  +L 
Sbjct: 189 RRGEGPRENPGGFFDAELRTACAYNKVVGECREFVHDFLDPVRVRQLFLAVPPGEVILLG 248

Query: 108 LSE--RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEAN 165
           L+    P  L++T + VPP+ +RP      +   ++D+T +   I+ +  ++Q   ++A 
Sbjct: 249 LAPGVSPTDLLMTTLLVPPVPVRPRGCAGTTTVRDDDLTAQYNDILVSTDTMQDGSLDAT 308

Query: 166 SAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRV 225
              ++   WE LQ+  A+ ++S + G P +++ +  L  + QRLK K GRFR NLSGKRV
Sbjct: 309 RYTET---WEMLQMRAARLLDSSLPGFPPNVRTS-DLKSYAQRLKSKHGRFRCNLSGKRV 364

Query: 226 EYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI 285
           +Y+GR+VISPDPNL + E+A+P+ +AR+LTYP+RV   N E +R+ ++NGP  +PGA  +
Sbjct: 365 DYSGRSVISPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPGATTV 424

Query: 286 RYP-DGTARVLYG-KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARI 343
               +G+ + L   + R++LA  L  G IV+RH+ +GD+VLFNRQPSLHR+S+M HRAR+
Sbjct: 425 YLAQEGSKKSLKNERDRHRLAARLAVGDIVERHVMNGDLVLFNRQPSLHRVSMMAHRARV 484

Query: 344 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVA 403
           +P+RT RFNE  C PYNADFDGDEMN+H  QTE+AR EAL LM    N+ + KNGE ++A
Sbjct: 485 LPFRTFRFNECCCAPYNADFDGDEMNVHFVQTEKARAEALQLMSTARNIISAKNGEPIIA 544

Query: 404 STQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSV 463
            TQDFL +++L+T +D F+DR  FS M  +    + +  LP PAILKPVELWTGKQLF +
Sbjct: 545 CTQDFLAAAYLVTSRDVFFDRGEFSQMVSHWLGPVTQFRLPIPAILKPVELWTGKQLFEL 604

Query: 464 LIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGK 523
           ++RP   + V ++     K Y+ K     G  +      C  +G+V F +S  ISG+L K
Sbjct: 605 IVRPSPEVDVLLSFEAPTKFYTRK-----GKHD------CAEEGYVAFLDSCFISGRLDK 653

Query: 524 ATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK 583
             LG G KDGL++ L    G   T+  M+R+A+ ++R++ N+GFS+G+ DV P  EL+ +
Sbjct: 654 KLLGGGAKDGLFARLHTIAGGGYTARVMSRIAQFTSRYLTNYGFSLGLGDVAPTPELNKQ 713

Query: 584 KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLP 643
           K  +++ + EVC+  IK    G++   PG    Q+LEA +   L+++R++ G A + +L 
Sbjct: 714 KAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLEARLNTELSKVRDECGTAAVQTLS 773

Query: 644 -WRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
              N+PLIM Q GSKGS +NI+QM+ACVGQQ+V G+R  + F DRSLPHF R  + PAA+
Sbjct: 774 IHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDRSLPHFHRFEEAPAAR 833

Query: 703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
           GFVANSFYSGLS TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+KA+E+LS++YD +VR
Sbjct: 834 GFVANSFYSGLSPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDGTVR 893

Query: 763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA 802
           N  G ++Q  +G+DG+DP  MEG SG PLN ++  + V+A
Sbjct: 894 NTKGDVIQLRFGEDGLDPQLMEGNSGTPLNLEQEWLSVRA 933



 Score =  291 bits (745), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 174/419 (41%), Positives = 239/419 (57%), Gaps = 34/419 (8%)

Query: 855  KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQ 914
            K+K  ++ G   + + LE +  +   +T   +  FI  C S+Y  K  E GT  GAI AQ
Sbjct: 1092 KVKDSKEGGRVSELRDLEMLQTELLPLTRGMVTRFIAQCASKYLRKACEPGTPCGAIAAQ 1151

Query: 915  SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITA--------ELEC 966
            S+GEP TQMTL+TFHFAGVASM+ITQGVPR+ E+IN  + I+TP++TA        E  C
Sbjct: 1152 SVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEVINANRNIATPVVTAPVLLMEGEENHC 1211

Query: 967  NDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKE 1026
                  AR VK +IE+ LL +V   I  V +     + + L+M  I   HL INA  V++
Sbjct: 1212 EIFRKRARFVKAQIERVLLREVVSEIVEVCSDTEFYLRVHLNMSVITKLHLPINAITVRQ 1271

Query: 1027 SIV------QTPKIKLKQQHIKVLDFRKLEIFPPV-DKSKIHFELYSLKNVLPMVIVKGI 1079
             I+       +P   L +  I+V     L ++P   D   +HF L  +  +LP V+V GI
Sbjct: 1272 RILAAAGHTMSPLRMLNEDCIEVFSLDTLAVYPHFQDARWVHFSLRRILGLLPEVVVGGI 1331

Query: 1080 KTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQ 1139
              + R +I+    E              +L EG  L+AVM   G+D  +   NH+  V++
Sbjct: 1332 GGINRAMISSNGTE--------------VLAEGAELRAVMNLWGVDSTRVVCNHVAVVER 1377

Query: 1140 TLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVL 1199
             LGIEAAR  I+DEI   +KA+ +SID RH+ LLADLMT RG VLGITR+GIQKM+ +VL
Sbjct: 1378 VLGIEAARRVIVDEIQNILKAYSLSIDVRHVYLLADLMTQRGVVLGITRYGIQKMNFNVL 1437

Query: 1200 MLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIR-----QRDAVPP 1253
             +ASFE+T DHL+NA+   R DR   VS+ II+G P+PLGT    +        D +PP
Sbjct: 1438 TMASFERTTDHLYNAAATQRVDRDLSVSDSIIVGKPVPLGTTSFDLLLDGSISNDVLPP 1496


>gi|133355|sp|P08968.1|RPC1_TRYBB RecName: Full=DNA-directed RNA polymerase III subunit RPC1;
           Short=RNA polymerase III subunit C1; AltName:
           Full=DNA-directed RNA polymerase III largest subunit;
           AltName: Full=RNA polymerase III subunit C160
 gi|10524|emb|CAA31014.1| unnamed protein product [Trypanosoma brucei]
          Length = 1530

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/820 (43%), Positives = 525/820 (64%), Gaps = 38/820 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
           + +  +E L++T L+K+I     T A K   C +CG +NG+V++ V  + ++H++  V  
Sbjct: 134 LSSSSLEPLQRTMLIKTI----QTDAYKTRVCLKCGGLNGVVRR-VRPMRLVHEKYHVEP 188

Query: 61  SL-------------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLY 107
                           E  +A  + K            L+PV V  LF  +   +  +L 
Sbjct: 189 RRGEGPRENPGGFFDAELRTACAYNKVVGECREFVHDFLDPVRVRQLFLAVPPGEVILLG 248

Query: 108 LSE--RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEAN 165
           L+    P  L++T + VPP+ +RP      +   ++D+T +   I+ +  ++Q   ++A 
Sbjct: 249 LAPGVSPTDLLMTTLLVPPVPVRPRGCAGTTTVRDDDLTAQYNDILVSTDTMQDGSLDAT 308

Query: 166 SAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRV 225
              ++   WE LQ+  A+ ++S + G P +++ +  L  + QRLK K GRFR NLSGKRV
Sbjct: 309 RYTET---WEMLQMRAARLLDSSLPGFPPNVRTS-DLKSYAQRLKSKHGRFRCNLSGKRV 364

Query: 226 EYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI 285
           +Y+GR+VISPDPNL + E+A+P+ +AR+LTYP+RV   N E +R+ ++NGP  +PGA  +
Sbjct: 365 DYSGRSVISPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPGATTV 424

Query: 286 RYP-DGTARVLYG-KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARI 343
               +G+ + L   + R++LA  L  G IV+RH+ +GD+VLFNRQPSLHR+S+M HRAR+
Sbjct: 425 YLAQEGSKKSLKNERDRHRLAARLAVGDIVERHVMNGDLVLFNRQPSLHRVSMMAHRARV 484

Query: 344 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVA 403
           +P+RT RFNE  C PYNADFDGDEMN+H  QTE+AR EAL LM    N+ + KNGE ++A
Sbjct: 485 LPFRTFRFNECCCAPYNADFDGDEMNVHFVQTEKARAEALQLMSTARNIISAKNGEPIIA 544

Query: 404 STQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSV 463
            TQDFL +++L+T +D F+DR  FS M  +    + +  LP PAILKPVELWTGKQLF +
Sbjct: 545 CTQDFLAAAYLVTSRDVFFDRGEFSQMVSHWLGPVTQFRLPIPAILKPVELWTGKQLFEL 604

Query: 464 LIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGK 523
           ++RP   + V ++     K Y+ K     G  +      C  +G+V F +S  ISG+L K
Sbjct: 605 IVRPSPEVDVLLSFEAPTKFYTRK-----GKHD------CAEEGYVAFLDSCFISGRLDK 653

Query: 524 ATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK 583
             LG G KDGL++ L    G   T+  M+R+A+ ++R++ N+GFS+G+ DV P  EL+ +
Sbjct: 654 KLLGGGAKDGLFARLHTIAGGGYTARVMSRIAQFTSRYLTNYGFSLGLGDVAPTPELNKQ 713

Query: 584 KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLP 643
           K  +++ + EVC+  IK    G++   PG    Q+LEA +   L+++R++ G A + +L 
Sbjct: 714 KAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLEARLNTELSKVRDECGTAAVQTLS 773

Query: 644 -WRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
              N+PLIM Q GSKGS +NI+QM+ACVGQQ+V G+R  + F DRSLPHF R  + PAA+
Sbjct: 774 IHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDRSLPHFHRFEEAPAAR 833

Query: 703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
           GFVANSFYSGLS TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+KA+E+LS++YD +VR
Sbjct: 834 GFVANSFYSGLSPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDGTVR 893

Query: 763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA 802
           N  G ++Q  +G+DG+DP  MEG SG PLN ++  + V+A
Sbjct: 894 NTKGDVIQLRFGEDGLDPQLMEGNSGTPLNLEQEWLSVRA 933



 Score =  290 bits (743), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 171/401 (42%), Positives = 234/401 (58%), Gaps = 29/401 (7%)

Query: 855  KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQ 914
            K+K  ++ G   + + LE +  +   +T   +  FI  C S+Y  K  E GT  GAI AQ
Sbjct: 1092 KVKDSKEGGRVSELRDLEMLQTELLPLTRGMVTRFIAQCASKYLRKACEPGTPCGAIAAQ 1151

Query: 915  SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITA--------ELEC 966
            S+GEP TQMTL+TFHFAGVASM+ITQGVPR+ E+IN  + I+TP++TA        E  C
Sbjct: 1152 SVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEVINANRNIATPVVTAPVLLMEGEENHC 1211

Query: 967  NDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKE 1026
                  AR VK +IE+ LL +V   I  V +     + + L+M  I   HL INA  V++
Sbjct: 1212 EIFRKRARFVKAQIERVLLREVVSEIVEVCSDTEFYLRVHLNMSVITKLHLPINAITVRQ 1271

Query: 1027 SIV------QTPKIKLKQQHIKVLDFRKLEIFPPV-DKSKIHFELYSLKNVLPMVIVKGI 1079
             I+       +P   L +  I+V     L ++P   D   +HF L  +  +LP V+V GI
Sbjct: 1272 RILAAAGHTMSPLRMLNEDCIEVFSLDTLAVYPHFQDARWVHFSLRRILGLLPDVVVGGI 1331

Query: 1080 KTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQ 1139
              + R +I+    E              +L EG  L+AVM   G+D  +   NH+  V++
Sbjct: 1332 GGINRAMISSNGTE--------------VLAEGAELRAVMNLWGVDSTRVVCNHVAVVER 1377

Query: 1140 TLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVL 1199
             LGIEAAR  I+DEI   +KA+ +SID RH+ LLADLMT RG VLGITR+GIQKM+ +VL
Sbjct: 1378 VLGIEAARRVIVDEIQNILKAYSLSIDVRHVYLLADLMTQRGVVLGITRYGIQKMNFNVL 1437

Query: 1200 MLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
             +ASFE+T DHL+NA+   R DR   VS+ II+G P+PLGT
Sbjct: 1438 TMASFERTTDHLYNAAATQRVDRDLSVSDSIIVGKPVPLGT 1478


>gi|449456849|ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/1272 (35%), Positives = 669/1272 (52%), Gaps = 150/1272 (11%)

Query: 91   VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
            VL + KR+TD DC++L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+D+T +L
Sbjct: 217  VLGILKRITDEDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQL 276

Query: 148  KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFV 206
              II+ N +L+++    + A       + LQ  +A Y ++++ G+P + Q   RP+    
Sbjct: 277  AMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSIC 336

Query: 207  QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
             RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  LTYPE V+ +NIE
Sbjct: 337  SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIE 396

Query: 267  KLRQCIQNGPDKYPGARMIRY--PDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVL 324
            +L++ ++ GP   PG    +Y   D   R+     +      L+ G  V+RHL DGD VL
Sbjct: 397  RLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVL 456

Query: 325  FNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALL 384
            FNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E L 
Sbjct: 457  FNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLE 516

Query: 385  LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF--SLMCCYMGDGMDRVD 442
            LM V   + +P++   ++   QD L     IT++DTF  +  F  +LM     DG     
Sbjct: 517  LMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMWWEDFDG----K 572

Query: 443  LPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETM 502
            +P PAILKP  LWTGKQ+F+++I         +NLT     +S          E     +
Sbjct: 573  IPAPAILKPQPLWTGKQVFNLIIPKQ------INLTRTSAWHS----------ESETGHI 616

Query: 503  CPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWI 562
             P D FV     EL+SG L K  LG      L  V+  + G  A    +     L   W+
Sbjct: 617  TPGDTFVRIEKGELLSGTLCKKALGTST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 675

Query: 563  GNHGFSIGIDDVQPKKELSDKKGKLISE-NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEA 621
              + FSIGI D        +K  + IS    EV N+ IK+  E  L+ +PG     + E 
Sbjct: 676  LQNAFSIGIGDTIADAATMEKINETISAAKNEVKNL-IKKAQERSLEPEPGRTMMDSFEN 734

Query: 622  VITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
             +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R P
Sbjct: 735  KVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 794

Query: 682  NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
             GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++TGY
Sbjct: 795  FGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 854

Query: 742  MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL-----NFDRL 796
            + RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L      F+R+
Sbjct: 855  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERI 914

Query: 797  LMKVKATCPPAGQRYLSPQQVSEI-------------VEK----------QLAAYGKESC 833
              + +         Y+ P+ V ++             V+K          ++A  G+ S 
Sbjct: 915  F-RYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSW 973

Query: 834  SEAFLNSLRKFFEGQQDKLDKKIKFVEDI-------GWDDKSQILEEVTHKTSGITEKQ- 885
                  +L++  +  Q       +   D+         D   + L+ V  +     E Q 
Sbjct: 974  PMPV--NLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQK 1031

Query: 886  -----LEVFIQTCFS------RYRVKRVEAGTAIGAI------------------GAQSI 916
                   + +++ F+       YR+ R      IG I                   AQSI
Sbjct: 1032 NATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1091

Query: 917  GEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDNENAAR 974
            GEP TQMTL TFH+AGV++ N+T GVPR++EIIN AKRI TP ++  L  E N  +  A+
Sbjct: 1092 GEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAK 1151

Query: 975  VVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKI 1034
             V+  +E T L  V ++ ++       S +I  D++ ++  +   + +I  E I  +P +
Sbjct: 1152 TVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKI--SPWL 1209

Query: 1035 KLKQQHIKVLDFRKLEIFPPVDKSKIHFE------------------------------- 1063
               + + +++  +KL +    +K  + F+                               
Sbjct: 1210 LRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEL 1269

Query: 1064 ----------LYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKK---KYRLL 1109
                      L  ++ N+L  + ++GI  + +V I  K  +  K  EN   K   ++ L 
Sbjct: 1270 TDESAEDDVFLKKIESNMLTEMALRGIPDINKVFI--KCGKVNKFDENEGFKPEMEWMLD 1327

Query: 1110 VEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRH 1169
             EG  L AVM  E +D  +T SNH+ EV + LGIEA R  ++DE+   +   G  ++ RH
Sbjct: 1328 TEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRH 1387

Query: 1170 MMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSEC 1229
            + +L D MT+RG ++ ITR GI + D   +M  SFE+T D L +A+V    D + GV+E 
Sbjct: 1388 LAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTEN 1447

Query: 1230 IIMGIPMPLGTG 1241
            I++G   P+GTG
Sbjct: 1448 IMLGQLAPIGTG 1459


>gi|449524332|ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/1272 (35%), Positives = 669/1272 (52%), Gaps = 150/1272 (11%)

Query: 91   VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
            VL + KR+TD DC++L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+D+T +L
Sbjct: 217  VLGILKRITDEDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQL 276

Query: 148  KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFV 206
              II+ N +L+++    + A       + LQ  +A Y ++++ G+P + Q   RP+    
Sbjct: 277  AMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSIC 336

Query: 207  QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
             RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  LTYPE V+ +NIE
Sbjct: 337  SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIE 396

Query: 267  KLRQCIQNGPDKYPGARMIRY--PDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVL 324
            +L++ ++ GP   PG    +Y   D   R+     +      L+ G  V+RHL DGD VL
Sbjct: 397  RLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVL 456

Query: 325  FNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALL 384
            FNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E L 
Sbjct: 457  FNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLE 516

Query: 385  LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF--SLMCCYMGDGMDRVD 442
            LM V   + +P++   ++   QD L     IT++DTF  +  F  +LM     DG     
Sbjct: 517  LMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMWWEDFDG----K 572

Query: 443  LPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETM 502
            +P PAILKP  LWTGKQ+F+++I         +NLT     +S          E     +
Sbjct: 573  IPAPAILKPQPLWTGKQVFNLIIPKQ------INLTRTSAWHS----------ESETGHI 616

Query: 503  CPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWI 562
             P D FV     EL+SG L K  LG      L  V+  + G  A    +     L   W+
Sbjct: 617  TPGDTFVRIEKGELLSGTLCKKALGTST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 675

Query: 563  GNHGFSIGIDDVQPKKELSDKKGKLISE-NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEA 621
              + FSIGI D        +K  + IS    EV N+ IK+  E  L+ +PG     + E 
Sbjct: 676  LQNAFSIGIGDTIADAATMEKINETISAAKNEVKNL-IKKAQERSLEPEPGRTMMDSFEN 734

Query: 622  VITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
             +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R P
Sbjct: 735  KVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 794

Query: 682  NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
             GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++TGY
Sbjct: 795  FGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 854

Query: 742  MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL-----NFDRL 796
            + RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L      F+R+
Sbjct: 855  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERI 914

Query: 797  LMKVKATCPPAGQRYLSPQQVSEI-------------VEK----------QLAAYGKESC 833
              + +         Y+ P+ V ++             V+K          ++A  G+ S 
Sbjct: 915  F-RYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSW 973

Query: 834  SEAFLNSLRKFFEGQQDKLDKKIKFVEDI-------GWDDKSQILEEVTHKTSGITEKQ- 885
                  +L++  +  Q       +   D+         D   + L+ V  +     E Q 
Sbjct: 974  PMPV--NLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQK 1031

Query: 886  -----LEVFIQTCFS------RYRVKRVEAGTAIGAI------------------GAQSI 916
                   + +++ F+       YR+ R      IG I                   AQSI
Sbjct: 1032 NATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1091

Query: 917  GEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDNENAAR 974
            GEP TQMTL TFH+AGV++ N+T GVPR++EIIN AKRI TP ++  L  E N  +  A+
Sbjct: 1092 GEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAK 1151

Query: 975  VVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKI 1034
             V+  +E T L  V ++ ++       S +I  D++ ++  +   + +I  E I  +P +
Sbjct: 1152 TVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKI--SPWL 1209

Query: 1035 KLKQQHIKVLDFRKLEIFPPVDKSKIHFE------------------------------- 1063
               + + +++  +KL +    +K  + F+                               
Sbjct: 1210 LRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEL 1269

Query: 1064 ----------LYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKK---KYRLL 1109
                      L  ++ N+L  + ++GI  + +V I  K  +  K  EN   K   ++ L 
Sbjct: 1270 TDESAEDDVFLKKIESNMLTEMALRGIPDINKVFI--KCGKVNKFDENEGFKPEMEWMLD 1327

Query: 1110 VEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRH 1169
             EG  L AVM  E +D  +T SNH+ EV + LGIEA R  ++DE+   +   G  ++ RH
Sbjct: 1328 TEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRH 1387

Query: 1170 MMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSEC 1229
            + +L D MT+RG ++ ITR GI + D   +M  SFE+T D L +A+V    D + GV+E 
Sbjct: 1388 LAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTEN 1447

Query: 1230 IIMGIPMPLGTG 1241
            I++G   P+GTG
Sbjct: 1448 IMLGQLAPIGTG 1459


>gi|297603848|ref|NP_001054670.2| Os05g0151000 [Oryza sativa Japonica Group]
 gi|222630225|gb|EEE62357.1| hypothetical protein OsJ_17146 [Oryza sativa Japonica Group]
 gi|255676030|dbj|BAF16584.2| Os05g0151000 [Oryza sativa Japonica Group]
          Length = 1834

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/1279 (35%), Positives = 670/1279 (52%), Gaps = 152/1279 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            IL+   VL + K ++D DC +L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+
Sbjct: 212  ILSAERVLNVLKHISDEDCLLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTSSRSED 271

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VAR 200
            D+T +L  II+ N +L+++      A       + LQ  +A Y ++++ G P + Q   R
Sbjct: 272  DLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNELPGQPRATQRSGR 331

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            P+     RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I E+ +P  +A  LTYPE V
Sbjct: 332  PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETV 391

Query: 261  SDHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRH 316
            + +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RH
Sbjct: 392  TPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLEL--GYKVERH 449

Query: 317  LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
            L DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ 
Sbjct: 450  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 509

Query: 377  EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
            E R E L LM V   + +P++   ++   QD L     IT++DT  ++  F  +  +  D
Sbjct: 510  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWED 569

Query: 437  GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG-DE 495
               +V  P PAILKP  +WTGKQ+F+++I    N                 LIR  G   
Sbjct: 570  FDGKV--PAPAILKPRPIWTGKQVFNLIIPKQIN-----------------LIRFSGWHS 610

Query: 496  EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
            E     + P D  V     EL+SG L K TLG      L  V+  + G  A    +    
Sbjct: 611  EAETRFITPGDTMVRIEKGELLSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQ 669

Query: 556  KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
             L   W+  +GFSIGI D        +   + IS+        IK++ + +L+ + G   
Sbjct: 670  WLVNYWLLQNGFSIGIGDTIADAATMENINETISKAKNDVKKLIKQFRDNQLEAEAGRTT 729

Query: 616  AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
             ++ E  + ++LN+ R+ AG +   SL   N+   M+  GSKG+ INISQM ACVGQQ+V
Sbjct: 730  MESFENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQMTACVGQQNV 789

Query: 676  GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
             G+R P GF +R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVK
Sbjct: 790  EGKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 849

Query: 736  TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL---- 791
            T++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L    
Sbjct: 850  TSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKK 909

Query: 792  -NFDRLLMKVKATCPPAGQRYLSPQQ------VSEI-------VEK----------QLAA 827
              FD +  + +         YLS Q       +SEI       V+K          ++A 
Sbjct: 910  AEFDNVF-RYELDDENWKPNYLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIAT 968

Query: 828  YGKESCSEAFLNSLRKFFEGQQ---------------------DKLDKKIKFVEDIGWDD 866
             G  +     +N  R  +  Q+                     DKL +++K V   G DD
Sbjct: 969  TGDNTWPMP-VNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVP--GDDD 1025

Query: 867  -----------------KSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIG 909
                             +S    +   K   +T++  E  I    SR+    V  G  IG
Sbjct: 1026 ISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIG 1085

Query: 910  AIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECN 967
             + AQSIGEP TQMTL TFH+AGV++ N+T GVPR++EIIN AK I TP ++  L  E N
Sbjct: 1086 CVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLKPEVN 1145

Query: 968  DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKES 1027
              +  A+ V+  +E T L  V  + +I         +I  D E +Q  +   + DI  + 
Sbjct: 1146 KKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDEDIDPDK 1205

Query: 1028 IVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFE-----LYSLKNVLPMVI------- 1075
            I  +P +   + + +++  +KL +    +K    F+     +++  N   +++       
Sbjct: 1206 I--SPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRITND 1263

Query: 1076 ------------------------------VKGIKTVERVVIAEKEKEKRKVKENG---E 1102
                                          ++GI  + +V I  KE    K ++N     
Sbjct: 1264 EAQKGEIQDEYGEDDVFLKKIESNMLTEMALRGIPGINKVFI--KEGNVNKFEDNDGFKT 1321

Query: 1103 KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHG 1162
            +K + L  EG  L AVM  E +D  +T SNH+ EV + LGIEA R  ++DE+   +   G
Sbjct: 1322 EKGWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1381

Query: 1163 MSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDR 1222
              ++ RH+ +L D MT+RG ++ ITR GI + D   LM  SFE+T D L +A+V    D 
Sbjct: 1382 SYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDP 1441

Query: 1223 IEGVSECIIMGIPMPLGTG 1241
            + GVSE I++G   P+GTG
Sbjct: 1442 LRGVSENIMLGQLAPIGTG 1460


>gi|167042230|gb|ABZ06962.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
            crenarchaeote HF4000_ANIW93I24]
          Length = 1264

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1171 (35%), Positives = 643/1171 (54%), Gaps = 103/1171 (8%)

Query: 86   LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
            L P+ +   F ++TD D E++     + RPE  I+  + VPP+ +RPS+I++    +E+D
Sbjct: 178  LLPITIRERFLQITDDDLELVNYNTATARPEWFILQALPVPPVTVRPSIILESGIRSEDD 237

Query: 143  ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARP 201
            +T ++  II+ N  L++               + LQ     Y +++V G+P +     RP
Sbjct: 238  LTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHCTTYFDNEVSGIPQAHHRSGRP 297

Query: 202  LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
            L    QRLKGK+GRFRG+LSGKRV+++ RTVISPDPNL + EV +P  +A  LT PE V+
Sbjct: 298  LKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLDLGEVGVPTSIASKLTIPEIVT 357

Query: 262  DHNIEKLRQCIQNGPDKYPGARMIRYPDGTA-RVLYGKFRNQLAVELKSGCIVDRHLEDG 320
            + NIEKL++ + NGP+ +PG   I  PDG   R+ + +   Q+A +L+ G +V+RHL DG
Sbjct: 358  EWNIEKLKKLVINGPNTFPGVNYIVRPDGVKIRLDFVEDTLQVANQLEIGYLVERHLSDG 417

Query: 321  DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
            DVVLFNRQPSLH+MSIM H  R++P +T R + SVC PYNADFDGDEMN+HVPQ+EEAR 
Sbjct: 418  DVVLFNRQPSLHQMSIMAHHVRVLPGKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARA 477

Query: 381  EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
            EA+LLM VQ  L +P+ G  ++ + +DF+T ++L+T+ DT   +  FS     M  G D 
Sbjct: 478  EAMLLMRVQEQLISPRFGGPIIGALRDFITGAYLLTKDDTTLTKQEFSNYA--MLGGYDE 535

Query: 441  VDLPTPAIL-KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIR-TEGDEEIR 498
              LP P I  K   L+TGKQLFS+ +    N              ++K  R T G ++  
Sbjct: 536  -KLPEPKIKNKNGSLYTGKQLFSLFLPSDFNF-----------VMTSKWSRGTNGKQKD- 582

Query: 499  IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                      V  +N EL+SG + K  +G    + +   + +DYG    +  +N +  + 
Sbjct: 583  ----------VVIKNGELVSGVIDKTGIGAEEPESILHRIAKDYGNEKANKFLNSVLIII 632

Query: 559  ARWIGNHGFSIGIDDVQPKKELSDKKGKLI----SENYEVCNVKIKEYNEGKLQLKPGCD 614
             ++I ++GFS G  D+    ELS+K  + I     E Y+     I + N+G L+   G  
Sbjct: 633  KQFITDYGFSYGYSDL----ELSEKDRQAILTDLKETYDKVADIIVQKNKGTLKGLRGMT 688

Query: 615  AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
             A+T EA IT  L R R+ AG     +L   N+  IM+  G++GS +N+ QM   +GQQS
Sbjct: 689  IAETAEAKITYELARARDRAGITANSNLADDNAGKIMATTGARGSALNVGQMAGALGQQS 748

Query: 675  VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
              G+R   G+ +R+L HF      P + GFV ++F  GLS  EFFFH MGGREGLVDTAV
Sbjct: 749  RRGKRLHTGYSNRTLSHFKEHDDNPDSHGFVKSNFRDGLSVLEFFFHAMGGREGLVDTAV 808

Query: 735  KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFD 794
            +T  +GYM RRLI A E + ++YD +VR+  G I+QFLYG+DG+D A  +   GE  N +
Sbjct: 809  RTQQSGYMQRRLINAFEHIRLEYDGTVRDPHGHIIQFLYGEDGIDVAKSD--HGEAFNIN 866

Query: 795  RLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDK 854
            RL+                                    SE+ ++S  K  + +   + K
Sbjct: 867  RLIE-----------------------------------SESIIDSGSKATKDEITSISK 891

Query: 855  KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQ 914
            K   V    ++ K   +       S ++++ LE   +     Y   +VE G A+G + AQ
Sbjct: 892  KYTKV----FNPKLTSMVNDGLHNSKLSKEGLENVCKKGLELYDKSKVEPGQAVGIVTAQ 947

Query: 915  SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAAR 974
            SIGEPGTQMTL+TFH AG+A  N+T G+PRI E+++  K+ STP +   L+ +   +  +
Sbjct: 948  SIGEPGTQMTLRTFHTAGIAEKNVTLGLPRIIELVDARKKPSTPSMDIYLDKDSKSSKEK 1007

Query: 975  VVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKI 1034
             ++  I + +L      + I          I L ++ ++  +   + D +  ++    K 
Sbjct: 1008 AIQ--IAREILQTTVADLLIRQAETDYQTKITLSVDNVRLKNRGCSLDDIMTALETNKKF 1065

Query: 1035 KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEK 1094
            +LK  +    +   L++    D + +     +L+N +    VKG+  +ER+ + E     
Sbjct: 1066 ELKLDN----NIITLQLVAESDVATV----VALRNKVLKTTVKGVPDIERITLKE----- 1112

Query: 1095 RKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEI 1154
                ENG+   + +   G+ L  V+  +G+D    ++N++FE+   LGIEAAR  +I+E+
Sbjct: 1113 ----ENGD---WLIQTTGSNLAKVIVVKGVDKNNVRTNNVFEISTVLGIEAARTSLINEL 1165

Query: 1155 NETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA 1214
              T++  G+ +D R++ML+ADLM  +G +  I R GI     SVL  A+FE T   + NA
Sbjct: 1166 KATLENQGLEVDVRYLMLVADLMCHKGYLQQIGRHGIAGSKDSVLARAAFEITVPTIANA 1225

Query: 1215 SVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            +  G  + ++G++E +I+G  +P+G+G + I
Sbjct: 1226 AKLGEIEELKGITENVIVGSLIPIGSGTVDI 1256


>gi|342183998|emb|CCC93479.1| DNA-directed RNA polymerase iii largest subunit [Trypanosoma
           congolense IL3000]
          Length = 1537

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/821 (44%), Positives = 524/821 (63%), Gaps = 40/821 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKV-- 58
           + +  +E L++  L+K+I     T A K   C +CG +NG+V++ V  + ++H++  V  
Sbjct: 134 LSSSTLEPLQRMTLIKTI----QTDAYKTHICLKCGGLNGVVRR-VRPMRLVHEKYSVYL 188

Query: 59  ---------TESL--QEFASAITHTKE-SKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
                     ES    E  +A  + K  S+   NV  + L+PV V  LF  +      +L
Sbjct: 189 RRGEGSVEKPESFFDVELQTACAYNKTISENKENVHDF-LDPVRVRQLFLAVPPDQVVLL 247

Query: 107 YLSE--RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEA 164
            L+    P  L++T + VPP+ +RP      + + E+DIT +   I+ +  +LQ   ++A
Sbjct: 248 GLAPGVNPVDLLMTTLLVPPVQVRPRGNAGTTAAREDDITAQYNDILISAETLQDGSLDA 307

Query: 165 NSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKR 224
               K    WE LQ+  A+ ++S + G P S++ +  L  + QRLK K GRFR NLSGKR
Sbjct: 308 T---KYTETWELLQMRAARLLDSALPGFPPSVRTS-DLKSYAQRLKSKNGRFRCNLSGKR 363

Query: 225 VEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARM 284
           V+Y+GR+VISPDPNL + E+A+P+ +AR+LTYP+RV   N E +R+ ++NGPD +PGA  
Sbjct: 364 VDYSGRSVISPDPNLDVDELAVPLHVARVLTYPQRVFKSNHELMRRLVRNGPDVHPGAVT 423

Query: 285 IRYP-DGTARVLYG-KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRAR 342
           +    +G+ + L   + R +LA  L  G IV+RH+ +GD++LFNRQPSLHR+S+M HRAR
Sbjct: 424 VYLAQEGSRKSLKNERDRLRLAARLAVGDIVERHVMNGDLILFNRQPSLHRVSMMAHRAR 483

Query: 343 IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILV 402
           ++P+RT RFNE  C PYNADFDGDEMN+H  QTEEAR EAL LM    N+ + KNGE ++
Sbjct: 484 VLPFRTFRFNECCCAPYNADFDGDEMNVHFVQTEEARAEALQLMSTAKNIISTKNGEPII 543

Query: 403 ASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFS 462
           A TQDFL +++L T +D F+DR   S M  Y    + +  LP PAILKP ELWTGKQLF 
Sbjct: 544 ACTQDFLAAAYLATGRDVFFDRLEMSQMVSYWLGPVTQFRLPIPAILKPTELWTGKQLFE 603

Query: 463 VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
           +++RP   + + +      K Y+ K     G  +      C ++G+V F +S  ISG+L 
Sbjct: 604 LILRPSPEVDILLTFEAPTKFYTKK-----GKHD------CASEGYVAFLDSCFISGRLD 652

Query: 523 KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
           K  LG G KDGL++ L    G   T+  M+R+A+ + R++ N+GFS+G+ DV P  EL++
Sbjct: 653 KKLLGGGAKDGLFARLHTLAGGEYTARVMSRIAQFTTRYLTNYGFSLGLGDVAPTAELNE 712

Query: 583 KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
           +K  +++ + E CN  I     G++   PG    Q+LEA +   L+++R++ G A M +L
Sbjct: 713 RKAAVLNRSVETCNRLIASAKTGRMIPLPGLTVRQSLEARLNTELSKVRDECGTAAMQTL 772

Query: 643 PW-RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAA 701
               N+PL+M Q GSKGS +NI+QM+ACVGQQ+V GRR  + F DRSLPHF R  + PAA
Sbjct: 773 SIDSNTPLLMVQSGSKGSALNIAQMMACVGQQTVNGRRILDAFQDRSLPHFHRFEEAPAA 832

Query: 702 KGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSV 761
           +GFVANSFYSGLS TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+KA+E+L ++YD +V
Sbjct: 833 RGFVANSFYSGLSPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMKAMENLCVRYDGTV 892

Query: 762 RNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA 802
           RNA G +VQ  +G+DG+DP  MEG +G PLN ++  +  +A
Sbjct: 893 RNARGDVVQLKFGEDGLDPQLMEGNNGTPLNLEQEWLCARA 933



 Score =  285 bits (728), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 163/391 (41%), Positives = 237/391 (60%), Gaps = 29/391 (7%)

Query: 865  DDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMT 924
            D++S++LE +  +   ++   +  F+  C  +Y  K  E GT  GAI AQS+GEP TQMT
Sbjct: 1110 DEESRVLEGLQSELLPLSRSMVTRFLAQCADKYIRKACEPGTPCGAIAAQSVGEPSTQMT 1169

Query: 925  LKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL-----ECNDNENAAR---VV 976
            L+TFHFAGVASMNITQGVPR+ E+IN  + I+TP++TA +     E   +EN  +    V
Sbjct: 1170 LRTFHFAGVASMNITQGVPRLVEVINANRSIATPVVTAPVLRMQGEDESSENFQKRVVFV 1229

Query: 977  KGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIV------Q 1030
            K ++E+ LL +VA  I  V +S +  + I L+M  I+   L INA  V+E I+       
Sbjct: 1230 KAQVERVLLREVASEIVEVCSSDVFYLRIHLNMSVIKKLRLPINAITVRERILAAAGHLM 1289

Query: 1031 TPKIKLKQQHIKVLDFRKLEIFPPVDKSK-IHFELYSLKNVLPMVIVKGIKTVERVVIAE 1089
            +P   + +  I+V     L ++P +  ++ +HF L  + ++LP V+V GI  + R +I+ 
Sbjct: 1290 SPLRMISENCIEVHSLDTLAVYPYISDTRWVHFTLRRILSLLPDVVVGGISGINRAMISS 1349

Query: 1090 KEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARIC 1149
                              +L EG  L+AVM   G++  +   NH+  V++ LGIEAAR  
Sbjct: 1350 AGNA--------------ILAEGAELRAVMNLWGVESTRVGCNHVAVVERVLGIEAARRV 1395

Query: 1150 IIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTAD 1209
            I+DEI   +KA+ +SID RH+ LLADLMT RG VLGITR+GIQKM+ +VL +ASFE+T D
Sbjct: 1396 IVDEIQSILKAYSLSIDVRHIYLLADLMTQRGVVLGITRYGIQKMNFNVLTMASFERTTD 1455

Query: 1210 HLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
            HL++A+   R DR   VS+ II+G  +PLGT
Sbjct: 1456 HLYSAAATQRVDRNLSVSDSIIVGKSVPLGT 1486


>gi|448087303|ref|XP_004196296.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
 gi|359377718|emb|CCE86101.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
          Length = 1772

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/1284 (34%), Positives = 689/1284 (53%), Gaps = 154/1284 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L P  +L +FK ++  DC  L  +E   RPE ++IT +AVPP  +RPS+  + +   E+
Sbjct: 206  LLTPSEILSVFKHISPEDCFRLGFNEDYARPEWMLITVLAVPPPPVRPSIAFNDTARGED 265

Query: 142  DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
            D+T +L  I++ N ++Q+  ++ +     S F++L     LQ  VA Y+++D+ G P ++
Sbjct: 266  DLTFKLADILKANINVQRLEMDGSPQHVISEFEAL-----LQFHVATYMDNDIAGQPQAL 320

Query: 197  Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            Q   RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +A+ L+
Sbjct: 321  QKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLS 380

Query: 256  YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
            YPE V+ +NI +L + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+
Sbjct: 381  YPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVE 438

Query: 315  RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
            RHL D D VLFNRQPSLH+MS+M H+ ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 439  RHLMDNDPVLFNRQPSLHKMSMMSHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 498

Query: 375  TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
            + E R E   +  V   + +P++ + ++   QD L     +T +DTF  YD+    L   
Sbjct: 499  SPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIEYDQVMNMLYWI 558

Query: 433  YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
             + DG+    +P PAI+KP  LWTGKQL S+ I    +++ +                  
Sbjct: 559  PVWDGV----IPPPAIVKPKPLWTGKQLLSMAIPKGIHLQRF------------------ 596

Query: 493  GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
             D+   +  + P D  +   + E++ G + K T+G+    GL   ++R+ G    +    
Sbjct: 597  -DDGKNL--LSPKDSGMLIVDGEIMFGVVDKKTVGS-TGGGLIHTVMREKGPQVCAQLFG 652

Query: 553  RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
             L K+   W+ ++GFSIGI D              I +  +     I +  + KL  +PG
Sbjct: 653  SLQKVVNYWLLHNGFSIGIGDTIADASTMKNVTTTIEDAKKKVQEIINDAQQNKLDPEPG 712

Query: 613  CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
                ++ E  ++ +LN+ R+ AG++   +L   N+   M   GSKGS INISQM ACVGQ
Sbjct: 713  MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 772

Query: 673  QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
            Q V G+R P GF DR+LPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DT
Sbjct: 773  QIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 832

Query: 733  AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS----- 787
            AVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D   +E ++     
Sbjct: 833  AVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQAIDSIP 892

Query: 788  GEPLNFDRLL--------MKVKATCPPAGQRYLSPQQVSEIVEK---QLAA---YGKESC 833
            G    F+R            +K +    G+      ++ +++++   QL++   Y +E C
Sbjct: 893  GSDETFERRYRIDVLDPNRSIKESLLETGKEIRGDVKLQKVLDEEYNQLSSDRQYLREVC 952

Query: 834  ------SEAFLNSLRKFFEGQQD------------KLDKKIKFVEDIGWD------DKSQ 869
                  +     +LR+  +  Q             KLD+ ++ V+D+         DK+ 
Sbjct: 953  FPGGDYNWPLPVNLRRIIQNAQQIFHNGRHKTSDLKLDEIVRSVQDLCSKLLVVRGDKAL 1012

Query: 870  ILEEVTHKT--------------SGITEKQL-----EVFIQTCFSRYRVKRVEAGTAIGA 910
            + E   + T                I E +L     E  +    ++++   V  G  +G 
Sbjct: 1013 VKEAQNNATLLFQCLLRSRLASRRVIEEYKLNKISFEWVLGEIETQFQKSIVHPGEMVGV 1072

Query: 911  IGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECND 968
            I AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEI+N AK I TP +T  L  E   
Sbjct: 1073 IAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLQKEIAA 1132

Query: 969  NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESI 1028
            +   A+VV+  IE T L  V  + +I       S VI  D +T++ A+  I  + V+ESI
Sbjct: 1133 DIEKAKVVQSAIEHTTLKNVTSATEIFYDPDPRSTVIEEDYDTVE-AYFAIPDEKVEESI 1191

Query: 1029 -VQTPK-IKLKQQHIKVLDFRKLEIFPPVDKSKIHF--ELYSL-------KNVLPMVIVK 1077
              Q+P  ++L+    K+LD ++L +    +K   +F  +L+ +       K ++   +V+
Sbjct: 1192 EKQSPWLLRLELDRAKMLD-KQLTMSQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR 1250

Query: 1078 GIKTVERVVIAEKEKEKRKVK-----------------------------ENGEKKK--- 1105
              KT++    AE+++  ++++                             E+GE K+   
Sbjct: 1251 DPKTLDEDADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVSSPDESGEYKQGQE 1310

Query: 1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
            + L  +G  L  VM   G+D  +T SN+  E+   LGIEA R  +  EI   +   G  +
Sbjct: 1311 WVLETDGVNLADVMAVPGVDSTRTYSNNFIEILSVLGIEATRTALFKEILNVIAFDGSYV 1370

Query: 1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
            + RHM LL D+MT RG ++ ITR GI + D   LM  SFE+T + L  A+ +   D   G
Sbjct: 1371 NYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLEAASSAELDDCRG 1430

Query: 1226 VSECIIMGIPMPLGTGILKIRQRD 1249
            +SE +++G   PLGTG   +   D
Sbjct: 1431 ISENVMLGQMAPLGTGAFDVMVDD 1454


>gi|294878143|ref|XP_002768279.1| DNA-directed RNA polymerase III largest subunit, putative [Perkinsus
            marinus ATCC 50983]
 gi|239870527|gb|EER00997.1| DNA-directed RNA polymerase III largest subunit, putative [Perkinsus
            marinus ATCC 50983]
          Length = 1133

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/803 (47%), Positives = 508/803 (63%), Gaps = 50/803 (6%)

Query: 473  VYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKD 532
            V VNL + EK YS+      GD        C NDG+V F NSELI+G LGK  LG G+K 
Sbjct: 311  VLVNLEMAEKNYSH------GDP-----YFCRNDGYVIFYNSELIAGNLGKKILG-GSKP 358

Query: 533  GLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENY 592
            GL  VL+RD      + C+ RL+KLSARW+G  G S GIDDV    E+   K + ++E Y
Sbjct: 359  GLTFVLIRDNSPAVAAACLGRLSKLSARWLGTRGMSFGIDDVTASPEIEAFKKEQVAEKY 418

Query: 593  EVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMS 652
               + KI+EY +GKL LKPGC+A QTLEAVI   L +IR   G      LP  N P IM+
Sbjct: 419  AYVDEKIEEYRKGKLPLKPGCNAEQTLEAVINGELGKIRNVVGDRLEKVLPRFNKPRIMA 478

Query: 653  QCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSG 712
            QCGSKGSPIN+SQM+ C+GQQ+VGG+R  NGF++R+LPHF + +K P ++GFV +SF+SG
Sbjct: 479  QCGSKGSPINLSQMIVCLGQQNVGGQRIQNGFVNRTLPHFKKFSKTPQSRGFVEDSFFSG 538

Query: 713  LSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFL 772
            L+  E+FFHTMGGREGLVDTAVKTA+TGYM R+LIKALEDL ++YD +VR + G +VQF+
Sbjct: 539  LNPFEYFFHTMGGREGLVDTAVKTAETGYMQRKLIKALEDLGLKYDMTVRTSDGTVVQFV 598

Query: 773  YGDDGMDPANMEGKSGEPLNFDRLLMKVKATCP----------PAGQRYLSPQQVSEIVE 822
            +GDDG++PA MEGKS +PLNF+  +  V+              P+  R L+ + + ++ +
Sbjct: 599  FGDDGLNPAMMEGKS-KPLNFEHTMNHVQHVVEKHHTREVALLPSEYRALTNELIQQVDQ 657

Query: 823  KQLAAYGKESCSEA-FLNSLRKFFEGQQDKLDK-KIKF---VEDIGWDDKSQILEEVTHK 877
            +  +     S   + F   L +F  G   ++++ ++K    V+D   DD  +    +   
Sbjct: 658  EVKSICPLTSLDTSRFTGDLTEFIGGMASEMERERVKVGLPVDDRVRDDPRE--STLCDL 715

Query: 878  TSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN 937
            +  +TE QL  F+ TC  +YR   +E G A+GA  AQSIGEP TQMTLKTFHFAGVASMN
Sbjct: 716  SCALTEAQLRSFMTTCARKYRRALMEPGEAVGATSAQSIGEPATQMTLKTFHFAGVASMN 775

Query: 938  ITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            +T GVPRIKEIIN AK ISTPII+ +LE +  E AA +VK +I++TLLG + + IK V  
Sbjct: 776  VTLGVPRIKEIINAAKHISTPIISCKLEQDRVEAAAFMVKSKIQRTLLGDICEYIKQVYE 835

Query: 998  SRLASIVIALDMETIQDAHLCINADIVKESIVQTPK----IKLKQQHIKVLDFRKLEIFP 1053
                 +++ L  ET++   L +  D +KE++         +K++ + I+     KL I P
Sbjct: 836  PSGVYLIVKLCGETLRRMQLDLTMDELKEALCAKGALPGGLKIRPECIESRGKLKLAIRP 895

Query: 1054 -----------PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGE 1102
                       P +   + FE+ +L+N LP   VKG+K   RVV+      K + K+  +
Sbjct: 896  AGAVDSRGRTLPPNPETLWFEVQALRNALPQAPVKGLKQCSRVVV-----NKEEAKDGSK 950

Query: 1103 KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHG 1162
               Y LLVEG GLQ VMG EG+   K+ SNH+ EVQ  LGIEAAR  I+ EI+  MK  G
Sbjct: 951  DTIYSLLVEGYGLQDVMGIEGVVAEKSVSNHVLEVQSVLGIEAARKSIMSEIDVIMKHFG 1010

Query: 1163 MSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDR 1222
            MS+D RH+ +L D MT+RGE LGI RFGI KM  S +MLASFEKT+D LF A+V  R D 
Sbjct: 1011 MSVDYRHIQMLGDCMTYRGETLGINRFGISKMSNSTMMLASFEKTSDFLFEAAVFNRPDP 1070

Query: 1223 IEGVSECIIMGIPMPLGTGILKI 1245
            + GVSE IIMG P+ LGTG+ K+
Sbjct: 1071 VVGVSESIIMGNPVHLGTGLFKL 1093



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 87/164 (53%), Gaps = 7/164 (4%)

Query: 3   NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-AVLGIIH----DRSK 57
           N   +A +     K + +K      K  +CP C   NG VKK     + ++H    D++K
Sbjct: 158 NRTRKATKDVQQQKGVFRKLVDTCKKVRQCPYCDAYNGAVKKGTRGYMTLVHELPKDQAK 217

Query: 58  VTESLQEFASAITHTKE-SKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLI 116
           V E  Q+++ A+++  E       VA   L P+++L L  +M  +D E+L L  +PE+L+
Sbjct: 218 V-EYQQQYSDAVSNNPEIGNHLSKVAYEDLTPLHLLPLLAKMPPSDQEMLKLPPQPERLV 276

Query: 117 ITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQE 160
           +T++ V P+ IRPSV +  + + E+D++ +   I+  N  + ++
Sbjct: 277 VTHVPVSPVCIRPSVQIGDAGTQEDDLSVQTSDIVLVNLEMAEK 320


>gi|340056888|emb|CCC51227.1| DNA-directed RNA polymerase iii largest subunit [Trypanosoma vivax
           Y486]
          Length = 1533

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/821 (43%), Positives = 531/821 (64%), Gaps = 40/821 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVT- 59
           + + K+E L++  L+K I     T A K   C +CG +NG+V++ +  + ++H++ +V  
Sbjct: 134 LSSTKLEPLQRAMLIKMI----QTDAYKTRVCLKCGGLNGVVRR-IRPMRLVHEKCRVVL 188

Query: 60  ----ESLQ--------EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLY 107
               ES++        E  +A  + K  +   +     L+PV V  LF+ +   +  +L 
Sbjct: 189 RRGEESVEDPSKLFDVELRTARLYNKSLEECRDYVHDFLDPVRVRQLFQAIPPEEFALLG 248

Query: 108 LSE--RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEAN 165
           L+    P  L++T + VPP+ +RP      +   ++D+T +   I+ +  +LQ   ++A 
Sbjct: 249 LAPGVSPLDLLMTTLLVPPVQVRPRGSSGTATIRDDDLTAQYNDILVSADTLQDGSLDAT 308

Query: 166 SAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRV 225
              K    WE LQ+  A+ ++S + G P +++ +  L  + QRLK K GRFR NLSGKRV
Sbjct: 309 ---KYTETWEMLQMRAARLLDSALPGFPPNVRTS-DLKSYAQRLKSKHGRFRCNLSGKRV 364

Query: 226 EYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI 285
           +Y+GR+VISPDPNL + E+A+P+R+AR+LTYP+RV   N E +R+ ++NGP  +PGA  +
Sbjct: 365 DYSGRSVISPDPNLDVDELAVPLRVARVLTYPQRVYKCNHELMRRLVRNGPYVHPGAVTV 424

Query: 286 RYP-DGTARVLYG-KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARI 343
               +G+++ L   + R +LA  L  G IV+RHL +GD+VLFNRQPSLHR+S+M HRAR+
Sbjct: 425 YLAQEGSSKSLKNERDRERLAARLAVGDIVERHLMNGDIVLFNRQPSLHRVSMMAHRARV 484

Query: 344 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVA 403
           +P+RT RFNE  C PYNADFDGDEMN+H  QTEEAR EAL LM    N+ + KNGE ++A
Sbjct: 485 LPFRTFRFNECCCAPYNADFDGDEMNVHFVQTEEARAEALHLMSTARNIISAKNGEPIIA 544

Query: 404 STQDFLTSSFLITRKDTFYDRAAFS-LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFS 462
            TQDFL +++L+T +D F DR+  S  +  ++G G ++  LP PAILKPVELWTGKQLF 
Sbjct: 545 CTQDFLAAAYLVTARDVFLDRSQLSQFVSHWLGSG-EQFRLPVPAILKPVELWTGKQLFE 603

Query: 463 VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
           ++IRP   + V ++L    K YS      EG  +      C  +G+V F +S  ISG++ 
Sbjct: 604 LIIRPSPEVGVLLSLEAPTKFYSR-----EGRHD------CVAEGYVSFIDSRYISGRMD 652

Query: 523 KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
           K  LG G+KDGL++ L    G   T+  M+R+A+ ++R++ N+GFS+G+ DV P  EL++
Sbjct: 653 KRLLGGGSKDGLFARLHTLAGGQYTARVMSRIAQFTSRYLTNYGFSLGLGDVAPTTELNE 712

Query: 583 KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
            K  ++  ++E CN  I+    G ++  PG    Q+LE  +   L+++R++ G A + +L
Sbjct: 713 LKSAVLKRSFEKCNQLIESAKSGLMEPLPGLTVRQSLETRLNAELSKVRDECGTAAVQTL 772

Query: 643 PW-RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAA 701
               N PLIM   GSKGS +NI+QM+ACVGQQ+V G+R  N F DRSLPHF R  + P+A
Sbjct: 773 SVDTNIPLIMVNSGSKGSALNIAQMMACVGQQTVNGKRILNAFQDRSLPHFHRFEEAPSA 832

Query: 702 KGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSV 761
           +GFVA+SFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+KA+E+LS++YD +V
Sbjct: 833 RGFVASSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDGTV 892

Query: 762 RNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA 802
           RN  G +VQ  +G+DG+DP  MEG SG PLN ++  +  +A
Sbjct: 893 RNTKGDVVQLRHGEDGLDPQLMEGSSGTPLNLEQEWLSARA 933



 Score =  276 bits (707), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 161/393 (40%), Positives = 233/393 (59%), Gaps = 31/393 (7%)

Query: 865  DDKSQ--ILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQ 922
            +DKS   +LEE+  +   +T   ++ F++ C  +Y  K  E  T  GAI AQS+GEP TQ
Sbjct: 1104 EDKSDPCVLEELQVELIPLTPAMIKAFLEQCAQKYVRKFCEPSTPCGAIAAQSVGEPSTQ 1163

Query: 923  MTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAA--------R 974
            MTL+TFHFAGV+SMNITQGVPR+ E+IN  + I+TP+ITA +     E  +        R
Sbjct: 1164 MTLRTFHFAGVSSMNITQGVPRLVEVINANRNIATPVITAPVRQLPGEEKSSESFVQRVR 1223

Query: 975  VVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIV----- 1029
             VK ++E+ LL +V   I  V ++R   + + L+M+ I    L INA  V++ I+     
Sbjct: 1224 HVKAQVERVLLREVTLEIVEVCSARDFCLRVHLNMDVITRLQLPINAFTVRQRILAAAAR 1283

Query: 1030 -QTPKIKLKQQHIKVLDFRKLEIFPPVDKSK-IHFELYSLKNVLPMVIVKGIKTVERVVI 1087
              +P   L +  +  +    L ++P     + +H+ L ++  +LP V+V GI  + R +I
Sbjct: 1284 PMSPLRILNEDCVMAISPEALVVYPGYQTERNVHYLLRTILGLLPDVVVGGIGGINRAMI 1343

Query: 1088 AEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAAR 1147
            +    E              +L EG  L+AVM    ++G +   NH+  +++ LGIEAAR
Sbjct: 1344 SSNGTE--------------VLAEGAELRAVMSLPSVEGSRVTCNHVAVIERVLGIEAAR 1389

Query: 1148 ICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKT 1207
              I+DEI   +KA+ +SID RH+ LLADLMT RG VLGITR+GIQKM+ +VL LASFE+T
Sbjct: 1390 QVIVDEIQNILKAYSLSIDIRHVYLLADLMTQRGVVLGITRYGIQKMNFNVLTLASFERT 1449

Query: 1208 ADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
             DHL+NA+   R DR   VS+ II+G  +PLGT
Sbjct: 1450 TDHLYNAAATQRVDRNLSVSDSIIVGKTVPLGT 1482


>gi|448082723|ref|XP_004195204.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
 gi|359376626|emb|CCE87208.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
          Length = 1758

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1284 (34%), Positives = 682/1284 (53%), Gaps = 154/1284 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L P  +L +FK ++  DC  L  +E   RPE ++IT +AVPP  +RPS+  + +   E+
Sbjct: 206  LLTPSEILSVFKHISPEDCFRLGFNEDYARPEWMLITVLAVPPPPVRPSIAFNDTARGED 265

Query: 142  DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
            D+T +L  I++ N ++Q+  ++ +     S F++L     LQ  VA Y+++D+ G P ++
Sbjct: 266  DLTFKLADILKANINVQRLEMDGSPQHVISEFEAL-----LQFHVATYMDNDIAGQPQAL 320

Query: 197  Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            Q   RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +A+ L+
Sbjct: 321  QKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLS 380

Query: 256  YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
            YPE V+ +NI +L + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+
Sbjct: 381  YPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVE 438

Query: 315  RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
            RHL D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 439  RHLMDNDPVLFNRQPSLHKMSMMSHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 498

Query: 375  TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
            + E R E   +  V   + +P++ + ++   QD L     +T +DTF  YD+    L   
Sbjct: 499  SPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIEYDQVMNMLYWI 558

Query: 433  YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
             + DG+    +P PAI+KP  LWTGKQL S+ I    +++ +                 +
Sbjct: 559  PVWDGV----IPPPAIVKPKPLWTGKQLLSMAIPKGIHLQRF----------------DD 598

Query: 493  GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
            G        + P D  +   + E++ G + K T+G+    GL   ++R+ G    +    
Sbjct: 599  GK-----NLLSPKDSGMLIVDGEIMFGVVDKKTVGS-TGGGLIHTVMREKGPQVCAQLFG 652

Query: 553  RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
             + K+   W+ ++GFSIGI D              I +        I +  + KL  +PG
Sbjct: 653  SIQKVVNYWLLHNGFSIGIGDTIADASTMKNVTTTIEDAKRKVQEIINDAQQNKLDPEPG 712

Query: 613  CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
                ++ E  ++ +LN+ R+ AG++   +L   N+   M   GSKGS INISQM ACVGQ
Sbjct: 713  MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 772

Query: 673  QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
            Q V G+R P GF DR+LPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DT
Sbjct: 773  QIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 832

Query: 733  AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS----- 787
            AVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D   +E ++     
Sbjct: 833  AVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQAIDSIP 892

Query: 788  GEPLNFDRLL--------MKVKATCPPAGQRYLSPQQVSEIVEKQLA------AYGKESC 833
            G   +F+R            +K +    G+      ++ ++++++         Y +E C
Sbjct: 893  GSDESFERRYRIDVLDPNRSIKESLLETGKEIRGDVKLQKVLDEEYNQLLSDRQYLREVC 952

Query: 834  ------SEAFLNSLRKFFEGQQD------------KLDKKIKFVEDIGWD------DKSQ 869
                  +     +LR+  +  Q             KLD+ ++ V+D+         DK+ 
Sbjct: 953  FPGGDFNWPLPVNLRRIIQNAQQIFHNGRHKTSDLKLDEIVRSVQDLCSKLLVVRGDKAL 1012

Query: 870  ILEEVTHKT-------------------SGITEKQLEVFIQTCFSRYRVKRVEAGTAIGA 910
            + E   + T                     +     E  +    ++++   V  G  +G 
Sbjct: 1013 VKEAQNNATLLFQCLLRSRLASRRVVEEYKLNRISFEWVLGEIETQFQKSIVHPGEMVGV 1072

Query: 911  IGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECND 968
            I AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEI+N AK I TP +T  L  E   
Sbjct: 1073 IAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLQKEIAA 1132

Query: 969  NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESI 1028
            +   A+VV+  IE T L  V  + +I       S VI  D +T++ A+  I  + V+ESI
Sbjct: 1133 DIEKAKVVQSAIEHTTLKNVTSATEIFYDPDPRSTVIEEDYDTVE-AYFAIPDEKVEESI 1191

Query: 1029 -VQTPK-IKLKQQHIKVLDFRKLEIFPPVDKSKIHF--ELYSL-------KNVLPMVIVK 1077
              Q+P  ++L+    K+LD ++L +    +K   +F  +L+ +       K ++   +V+
Sbjct: 1192 EKQSPWLLRLELDRAKMLD-KQLTMSQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR 1250

Query: 1078 GIKTVERVVIAEKEKEKRKVK-----------------------------ENGEKKK--- 1105
              KT++    AE+++  ++++                             E+GE K+   
Sbjct: 1251 DPKTLDEDADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVSSPDESGEYKQGQE 1310

Query: 1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
            + L  +G  L  VM   G+D  +T SN+  E+   LGIEA R  +  EI   +   G  +
Sbjct: 1311 WVLETDGVNLADVMAVPGVDATRTYSNNFIEILSVLGIEATRTALFKEILNVIAFDGSYV 1370

Query: 1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
            + RHM LL D+MT RG ++ ITR GI + D   LM  SFE+T + L  A+ +   D   G
Sbjct: 1371 NYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLEAASSAELDDCRG 1430

Query: 1226 VSECIIMGIPMPLGTGILKIRQRD 1249
            +SE +++G   PLGTG   +   D
Sbjct: 1431 ISENVMLGQMAPLGTGAFDVMVDD 1454


>gi|167044137|gb|ABZ08820.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
            crenarchaeote HF4000_APKG5C13]
          Length = 1268

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1178 (35%), Positives = 638/1178 (54%), Gaps = 113/1178 (9%)

Query: 86   LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
            L P+ +   F ++ D D  +L     + RPE  I+  + VPP+ +RPS+I++    +E+D
Sbjct: 178  LLPITIRERFSQIIDDDLRLLNYNVDTARPEWFILQVLPVPPVTVRPSIILETGIRSEDD 237

Query: 143  ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARP 201
            +T ++  II+ N  L++               + LQ     Y +++V G+P +     RP
Sbjct: 238  LTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHCTTYFDNEVSGIPQAHHRSGRP 297

Query: 202  LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
            L    QRLKGK+GRFRG+LSGKRV+++ RTVISPDPNL + EV +P+ +A  LT PE V+
Sbjct: 298  LKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLDLGEVGVPMSIATKLTIPEIVT 357

Query: 262  DHNIEKLRQCIQNGPDKYPGARMIRYPDGTA-RVLYGKFRNQLAVELKSGCIVDRHLEDG 320
            + NIEKL++ + NGP+ +PG   I  PDG   R+ + +   Q+A +L+ G +V+RHL DG
Sbjct: 358  EWNIEKLKKLVINGPNTFPGVNYIVRPDGVKIRLDFVEDTLQVADQLEIGYLVERHLSDG 417

Query: 321  DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
            DVVLFNRQPSLH+MSIM H  R++P +T R + SVC PYNADFDGDEMN+HVPQ+EEAR 
Sbjct: 418  DVVLFNRQPSLHQMSIMAHHVRVLPGKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARA 477

Query: 381  EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
            EA+LLM VQ  L +P+ G  ++   +DF+T ++L+T+ DT   +  FS     M  G D 
Sbjct: 478  EAMLLMRVQEQLISPRFGGPIIGGLRDFITGAYLLTKDDTTLTKQEFSNFA--MLGGYDE 535

Query: 441  VDLPTPAIL-KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
              LP P I  K   L+TGKQLFS+ +    N        V    +S  +   + D     
Sbjct: 536  -KLPEPKINNKNGLLYTGKQLFSLFLPSDFNF-------VMTSKWSKGIHGKQKD----- 582

Query: 500  ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
                     V  +N EL+SG + K+++G    + +   + +DYG       +N +  +  
Sbjct: 583  ---------VVIKNGELVSGVIDKSSIGAEEPESVLHRIAKDYGNEKAKKFLNSILIIIK 633

Query: 560  RWIGNHGFSIGIDDVQPKKELSDKKGKLI----SENYEVCNVKIKEYNEGKLQLKPGCDA 615
            ++I N+GFS G  D+    ELS+K  + I     E Y+     I + N+G L+   G   
Sbjct: 634  QFITNYGFSYGYSDL----ELSEKDRQAILTDLQETYDKVADIIVQKNKGTLKGLRGMTV 689

Query: 616  AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            ++T EA IT  L R R+ AG     +L   N+  IM+  G++GS +N+ QM   +GQQS 
Sbjct: 690  SETAEAKITYELARARDRAGVTANSNLEDDNAGKIMATTGARGSALNVGQMAGVLGQQSR 749

Query: 676  GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
             G+R   G+ +R+LPHF      P + GFV ++F  GLS  EFFFH MGGREGLVDTAV+
Sbjct: 750  RGKRLHTGYGNRTLPHFKEHDDNPDSHGFVKSNFRDGLSVLEFFFHAMGGREGLVDTAVR 809

Query: 736  TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR 795
            T  +GYM RRLI A E + ++YD +VR+  G I+QFLYG+DG+D A  +   GE  N +R
Sbjct: 810  TQQSGYMQRRLINAFEHIRLEYDGTVRDPHGHIIQFLYGEDGIDVAKSD--HGEAFNINR 867

Query: 796  LLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKK 855
            L                       I  + +   G ++  +   +  +K+ +    KL   
Sbjct: 868  L-----------------------IESESIIDSGSKATKDEITSISKKYTKAFNPKL--- 901

Query: 856  IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQS 915
                        + ++ +  H  S ++++ LE   +     Y   +VE G A+G + AQS
Sbjct: 902  ------------TSMVNDGLH-NSKLSKEGLENVCKKGLELYDKSKVEPGQAVGIVTAQS 948

Query: 916  IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARV 975
            IGEPGTQMTL+TFH AG+A  N+T G+PRI E+++  K+ STP +   L+ +   +    
Sbjct: 949  IGEPGTQMTLRTFHTAGIAEKNVTLGLPRIIELVDARKKPSTPSMDIYLDKDSKSSKEEK 1008

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET-----IQDAHLCINA---DIVKES 1027
             +  I      Q A+ I     + L       D +T     + +  L I     D +  +
Sbjct: 1009 KEKAI------QTAREILQTTVADLLVHPAETDYQTKITLSVDNNRLKIRGCTLDDITSA 1062

Query: 1028 IVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVI 1087
                 K  LK  +  +     L++    D   +     +L+N +    V+G+  +ER+ +
Sbjct: 1063 FEANKKFNLKLDNNTI----TLQLVTESDAPTV----IALRNKVLKTTVRGVPDIERITL 1114

Query: 1088 AEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAAR 1147
             E         ENG+   + +   G+ L  V+  +G+D    ++N++FE+   LGIEAAR
Sbjct: 1115 KE---------ENGD---WLIQTTGSNLAKVISVKGVDRNNVRTNNVFEISTVLGIEAAR 1162

Query: 1148 ICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKT 1207
              +I+E+  T++  G+ +D R++ML+ADLM  +G +  I R GI     SVL  A+FE T
Sbjct: 1163 TSLINELKATLENQGLEVDVRYLMLVADLMCHKGYLQQIGRHGIAGSKDSVLARAAFEIT 1222

Query: 1208 ADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               + NA+  G  ++++G++E +I+G  +P+G+G + I
Sbjct: 1223 VPTIANAAKLGEVEKLKGITENVIVGSLIPIGSGTVDI 1260


>gi|167043884|gb|ABZ08573.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
            crenarchaeote HF4000_APKG3E18]
          Length = 1273

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1250 (34%), Positives = 664/1250 (53%), Gaps = 142/1250 (11%)

Query: 16   KSIVKKCSTMASKAVKCPRCGYI-NGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKE 74
            K I ++    A K+ +CP CG I N ++                      F       ++
Sbjct: 138  KRIPEQIFEKAKKSKECPHCGKIQNDLI----------------------FTKPTIFIEK 175

Query: 75   SKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSV 131
            +K   N     L P+ +   F ++TD D  +L     + RPE  I+  + VPP+ +RPS+
Sbjct: 176  TKLGENR----LLPITIRERFSQITDDDLRLLNYNVDTARPEWFILQALPVPPVTVRPSI 231

Query: 132  IMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRG 191
            I++    +E+D+T ++  II+ N  L++               + LQ     Y +++V G
Sbjct: 232  ILESGIRSEDDLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHCTTYFDNEVSG 291

Query: 192  VPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRM 250
            +P +     RPL    QRLKGK+GRFRG+LSGKRV+++ RTVISPDPNL + EV +P+++
Sbjct: 292  IPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLDLGEVGVPVQI 351

Query: 251  ARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA-RVLYGKFRNQLAVELKS 309
            A  LT PE V++ NIEKL++ + NGP+ +PG   I  PDG   R+ + +  + +A  L+ 
Sbjct: 352  ATKLTIPEIVTEWNIEKLKKLVVNGPNTFPGVNYIVRPDGVKIRLDFVEDPSIIADSLEI 411

Query: 310  GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMN 369
            G +V+RHL DGD+VLFNRQPSLH+MSIM H  R++P +T R + SVC PYNADFDGDEMN
Sbjct: 412  GYLVERHLSDGDIVLFNRQPSLHQMSIMAHHVRVLPGKTFRLHPSVCPPYNADFDGDEMN 471

Query: 370  MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
            +HVPQ+EEAR EA+LLM VQ  L +P+ G  ++   +DF+T  +L+T+ DT   +  FS 
Sbjct: 472  LHVPQSEEARAEAMLLMRVQEQLISPRFGGPIIGGLRDFITGVYLLTKDDTTLTKQEFS- 530

Query: 430  MCCYMGDGMDRVDLPTPAI-LKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKL 488
               Y   G     LP P I  K   L+TGKQLFS+ +    N              ++K 
Sbjct: 531  --NYAMLGRYDGKLPEPKINSKNGLLYTGKQLFSLFLPSDFNF-----------VMTSKW 577

Query: 489  IR-TEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
             R T G ++            V  +N EL+SG + K  +G    + +   + +DYG    
Sbjct: 578  SRGTNGKQKD-----------VVIKNGELVSGVIDKTGIGAEEPESILHRIAKDYGNEKA 626

Query: 548  SGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLIS----ENYEVCNVKIKEYN 603
            +  +N +  +  ++I ++GFS G  D+    ELS+K  + I     + Y+     I + N
Sbjct: 627  NKFLNSVLIIIKQFITDYGFSYGYSDL----ELSEKDRQAIDNDLQQTYKTVAEIIADKN 682

Query: 604  EGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINI 663
            +G L+   G   A+T EA IT  L + R+ AG     +L   N+  IM+  G++GS +N+
Sbjct: 683  KGTLKGLRGMTIAETAEAKITYELAKARDRAGITANSNLADDNAGKIMATTGARGSALNV 742

Query: 664  SQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTM 723
             QM   +GQQS  G+R   G+ +R+LPHF      P + GFV ++F  GLS  EFFFH M
Sbjct: 743  GQMAGALGQQSRRGKRLHTGYGNRTLPHFKEHDDNPDSHGFVKSNFRDGLSVLEFFFHAM 802

Query: 724  GGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANM 783
            GGREGLVDTAV+T  +GYM RRLI A E + ++YD +VR+  G I+QFLYG+DG+D A  
Sbjct: 803  GGREGLVDTAVRTQQSGYMQRRLINAFEHIRLEYDGTVRDPHGHIIQFLYGEDGIDVAKS 862

Query: 784  EGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRK 843
            +   GE  N +RL+                                    S++ ++S  K
Sbjct: 863  D--HGEAFNINRLIE-----------------------------------SQSIIDSGSK 885

Query: 844  FFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVE 903
              + + + + KK   V    ++ K   +       S ++++ LE   +     Y   +VE
Sbjct: 886  ATKDEINSISKKYTKV----FNPKLTSMVNDGLHNSKLSKQGLENVCKKGLELYDKSKVE 941

Query: 904  AGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAE 963
             G A+G + AQSIGEPGTQMTL+TFH AG+A  N+T G+PRI E+++  K+ STP +   
Sbjct: 942  PGQAVGIVTAQSIGEPGTQMTLRTFHTAGIAEKNVTLGLPRIIELVDARKKPSTPSMDIY 1001

Query: 964  LECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDME-----TIQDAHLC 1018
            L+ +   +     +  I      Q+A+ I     + L +     D +     TI +  L 
Sbjct: 1002 LDKDSKSSKEEKKEKAI------QIAREILQTTVADLLTRSAETDYQTKITLTIDNNRLK 1055

Query: 1019 INA---DIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVI 1075
            I     D +  ++    K +L++ +  +     L++    D   +     +L+N +    
Sbjct: 1056 IRGCLLDDIMSALETNKKFELERDNNTI----TLQLVTESDAPTV----AALRNKVLKTT 1107

Query: 1076 VKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            VKG+  +ER+ + E         ENG+   + +   G+ L  V+  +G+D    ++N++F
Sbjct: 1108 VKGVPDIERLTLKE---------ENGD---WLIQTTGSNLAKVISVKGVDKNNVRTNNVF 1155

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEAAR  +I+E+  T++  G+ +D R++ML+ADLM  +G +  I R GI    
Sbjct: 1156 EISTVLGIEAARTSLINELKSTLENQGLEVDVRYLMLVADLMCHKGYLQQIGRHGIAGSK 1215

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             SVL  A+FE T   + NA+  G  + ++G++E +I+G  +P+G+G + I
Sbjct: 1216 DSVLARAAFEITVPTIANAAKLGEIEELKGITENVIVGSLIPIGSGTVDI 1265


>gi|255579596|ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
            communis]
 gi|223529812|gb|EEF31747.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
            communis]
          Length = 1855

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/1268 (35%), Positives = 671/1268 (52%), Gaps = 142/1268 (11%)

Query: 91   VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
            VL + KR++D DC +L  +    RP+ +I+  + +PP  +RPSV+MD S  +E+D+T +L
Sbjct: 217  VLGVLKRISDDDCRLLGFNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQL 276

Query: 148  KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFV 206
              II+ N +L+++      A       + LQ  VA Y ++++ G P + Q   RP+    
Sbjct: 277  AMIIRHNENLKKQEKGGAPAHIISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSIC 336

Query: 207  QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
             RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I ++ +P  +A  LTYPE V+ +NIE
Sbjct: 337  SRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIE 396

Query: 267  KLRQCIQNGPDKYPGARMIRY--PDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVL 324
            +L++ ++ GP   PG    +Y   D   R+     +      L+ G  V+RHL DGD VL
Sbjct: 397  RLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVL 456

Query: 325  FNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALL 384
            FNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E L 
Sbjct: 457  FNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLE 516

Query: 385  LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLP 444
            LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D   +V  P
Sbjct: 517  LMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKV--P 574

Query: 445  TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
             PAILKP  LWTGKQ+F+++I    N+      T    + S + + T GD  +RIE    
Sbjct: 575  APAILKPRPLWTGKQVFNLIIPKQINLI----RTAAWHSDSERGVITPGDTLVRIE---- 626

Query: 505  NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
                      EL+SG + K TLG      L  V+  + G  A    +     L   W+  
Sbjct: 627  --------KGELLSGTVCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 677

Query: 565  HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
            +GFSIGI D        +K  + IS         I++    +L+ KPG    ++ E  + 
Sbjct: 678  NGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKELEPKPGRTMMESFENEVN 737

Query: 625  DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
             +LNR R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R P GF
Sbjct: 738  QVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGF 797

Query: 685  IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
            IDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++TGY+ R
Sbjct: 798  IDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQR 857

Query: 745  RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL-----NFDRLLMK 799
            RL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L      FDR+  K
Sbjct: 858  RLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRVF-K 916

Query: 800  VKATCPPAGQRYLSPQQVSEI-------------VEK----------QLAAYGKESCSEA 836
             +         Y+    + ++             V+K          ++A  G  S    
Sbjct: 917  YELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQLGTEIATTGDSSWPLP 976

Query: 837  FLNSLRKFFEGQQD-KLDKK----IKFVEDIGWDDKSQILEEVTHKTSGIT---EKQLEV 888
             +N  R  +  Q+  K+DK+    I  +E +   DK Q   +V      ++   +K   +
Sbjct: 977  -VNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVPGDDPLSVEAQKNATL 1035

Query: 889  FI----------QTCFSRYRVKRVEAGTAIGAIGA---QSIGEPG--------------- 920
            F           +     YR+ R      IG I +   QS+  PG               
Sbjct: 1036 FFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPA 1095

Query: 921  TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKG 978
            TQMTL TFH+AGV++ N+T GVPR++EIIN AK+I TP ++  L  ECN  +  A+ V+ 
Sbjct: 1096 TQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLIPECNKTKERAKNVQC 1155

Query: 979  RIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQ 1038
             +E T L  V ++ ++       S +I  D++ ++  +   + +I  E I  +P +   +
Sbjct: 1156 ALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEISPEKI--SPWLLRIE 1213

Query: 1039 QHIKVLDFRKLEIFPPVDKSKIHFE----------------------------------- 1063
             + +++  +KL +    +K  + F+                                   
Sbjct: 1214 LNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDES 1273

Query: 1064 ------LYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRKVKEN-GEK--KKYRLLVEGT 1113
                  L  ++ N+L  + ++GI  + +V I  K+ +  K  EN G K  +++ L  EG 
Sbjct: 1274 AEDDVFLKKIESNMLTEMALRGIPDINKVFI--KQSKVSKFDENEGFKTIEEWMLDTEGV 1331

Query: 1114 GLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1173
             L AVM  E +D  +T SNH+ EV + LGIEA R  ++DE+   +   G  ++ RH+ +L
Sbjct: 1332 NLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAIL 1391

Query: 1174 ADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMG 1233
             D MT+RG ++ ITR GI + D   LM  SFE+T D L +A+V    D + GV+E I++G
Sbjct: 1392 CDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADYLRGVTENIMLG 1451

Query: 1234 IPMPLGTG 1241
               P+GTG
Sbjct: 1452 QLAPIGTG 1459


>gi|297798336|ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297312888|gb|EFH43311.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1839

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/1279 (35%), Positives = 669/1279 (52%), Gaps = 148/1279 (11%)

Query: 91   VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
            VL + KR++D DC++L  +    RP+ +I+  + +PP  +RPSV+MD +  +E+D+T +L
Sbjct: 219  VLSVLKRISDEDCQLLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQL 278

Query: 148  KRIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQVA-RPLSG 204
              II+ N +L+++  E N A   +    T  LQ  +A Y ++++ G P + Q + RP+  
Sbjct: 279  AMIIRHNENLKRQ--EKNGAPAHIISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKS 336

Query: 205  FVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHN 264
               RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  LTYPE V+ +N
Sbjct: 337  ICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYN 396

Query: 265  IEKLRQCIQNGPDKYPGARMIRY--PDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDV 322
            IE+L++ +  GP   PG    +Y   D   R+     +      L+ G  V+RHL+DGD 
Sbjct: 397  IERLQELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDF 456

Query: 323  VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA 382
            VLFNRQPSLH+MSIM HR RIMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E 
Sbjct: 457  VLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 516

Query: 383  LLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF--SLMCCYMGDGMDR 440
            L LM V   + +P+    ++   QD L     IT++DTF ++  F  +LM     DG   
Sbjct: 517  LELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDG--- 573

Query: 441  VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
              +P PAILKP  LWTGKQ+F+++I    N+  Y       +T       T GD ++RIE
Sbjct: 574  -KVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHADTETG----FITPGDTQVRIE 628

Query: 501  TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
                          EL++G L K TLG  N   L  V+  + G  A    +     L   
Sbjct: 629  ------------RGELLAGTLCKKTLGTSNG-SLVHVIWEEVGPDAARKFLGHTQWLVNY 675

Query: 561  WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
            W+  +GF+IGI D        +K  + IS         I+++ E KL  +PG    +T E
Sbjct: 676  WLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQEKKLDPEPGRTMTETFE 735

Query: 621  AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
              +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R 
Sbjct: 736  NRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 795

Query: 681  PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
            P GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++TG
Sbjct: 796  PFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 855

Query: 741  YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL-----NFDR 795
            Y+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L      FDR
Sbjct: 856  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDR 915

Query: 796  LLMKVKATCPPAGQRYLSPQQ------VSEIVEKQLAAYGK----------------ESC 833
               K +         YLS +       + E+ +   A Y K                +S 
Sbjct: 916  TF-KYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDST 974

Query: 834  SEAFLNSLRKFFEGQQD-KLD-KKIKFVEDIGWDDKSQILEEVTHKTSGI------TEKQ 885
                +N  R  +  Q+  K+D +KI  +  +   D    L+E      G        +K 
Sbjct: 975  WPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDDALSVEAQKN 1034

Query: 886  LEVFI----------QTCFSRYRVKRVEAGTAIGAIGA---QSIGEPG------------ 920
              +F           +     Y++ R      IG I +   QS+  PG            
Sbjct: 1035 ATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIG 1094

Query: 921  ---TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDNENAARV 975
               TQMTL TFH+AGV++ N+T GVPR++EIIN AKRI TP ++  L  E + ++  A+ 
Sbjct: 1095 EPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLTPEASKSKEGAKT 1154

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIK 1035
            V+  +E T L  V ++ ++       S +I  D E ++  +   + D+  + I  +P + 
Sbjct: 1155 VQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDEDVSPDKI--SPWLL 1212

Query: 1036 LKQQHIKVLDFRKLEIFPPVDKSKIHFE-------------------------------- 1063
              + + +++  +KL +    +K  + F+                                
Sbjct: 1213 RIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQ 1272

Query: 1064 ---------LYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRKVKENG---EKKKYRLLV 1110
                     L  ++ N+L  + ++GI  + +V I  K+  K +  E G     +++ L  
Sbjct: 1273 DESAEDDVFLKKIESNMLTEMALRGIPDINKVFI--KQVRKSRFDEEGGFKTSEEWMLDT 1330

Query: 1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
            EG  L AVM  E +D  +T SNH+ E+ + LGIEA R  ++DE+   +   G  ++ RH+
Sbjct: 1331 EGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1390

Query: 1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
             +L D MT+RG ++ ITR GI + D   LM  SFE+T D L +A+     D + GV+E I
Sbjct: 1391 AILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENI 1450

Query: 1231 IMGIPMPLGTGILKIRQRD 1249
            ++G   P+GTG  ++   D
Sbjct: 1451 MLGQLAPIGTGDCELYLND 1469


>gi|210075525|ref|XP_501909.2| YALI0C16566p [Yarrowia lipolytica]
 gi|199425290|emb|CAG82229.2| YALI0C16566p [Yarrowia lipolytica CLIB122]
          Length = 1750

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/1275 (36%), Positives = 679/1275 (53%), Gaps = 153/1275 (12%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L P  +L +FK ++  DC+ L L+E   RPE LIIT + VPP  +RPS+ ++ +   E+
Sbjct: 206  LLTPAEILNVFKHISSEDCQRLGLNEDYARPEWLIITTLPVPPPPVRPSIAINDTARGED 265

Query: 142  DITERLKRIIQTNASLQ---QELVEAN--SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
            D+T +L  I++ NA++Q   QE   A+  + F+SL     LQ  VA Y+++D+ G P ++
Sbjct: 266  DLTYKLADILKANANVQRCEQEGAPAHVVNEFESL-----LQYHVATYMDNDIAGQPQAL 320

Query: 197  Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            Q   RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ +V +P  +AR LT
Sbjct: 321  QKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPRSIARTLT 380

Query: 256  YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
            YPE V+  NI KL + ++NGP+++PGA+ +   D   R+     +    + L+ G  V+R
Sbjct: 381  YPEIVTPFNIHKLTEYVRNGPNEHPGAKYV-IRDTGERIDLRYHKRAGDIALQYGWKVER 439

Query: 316  HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
            HL D D VLFNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+
Sbjct: 440  HLMDNDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 499

Query: 376  EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCY 433
            EE R E   L  V   + +P++ + ++   QD L     +T +D+F  YD     L    
Sbjct: 500  EETRAELSQLCMVPLQIVSPQSNKPVMGIVQDTLCGVRKMTIRDSFIDYDMVMNILFWIP 559

Query: 434  MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
              DG+    +PTPAILKP  LWTGKQ+ S+ I    +++ +                   
Sbjct: 560  NWDGV----VPTPAILKPKPLWTGKQMVSMCIPKGIHLQRF------------------- 596

Query: 494  DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
            D++  I   CP D  +Y  + +++ G + K T+G     GL   ++R+ G+         
Sbjct: 597  DDQNPI--TCPKDNGMYIIDGQIMWGVVDKKTIG-ATGGGLVHTIMREKGSAVCCNFFGT 653

Query: 554  LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
            + K+   W+ ++GFSIGI D            + I E  +     I E +   L  + G 
Sbjct: 654  IQKVVNFWLLHYGFSIGIGDTIADSATMRDVTETIEEAKKKVKEIILEAHANTLTAEAGM 713

Query: 614  DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
               ++ E  ++ +LN+ R+ AG++   SL   N+   M   GSKGS INISQM ACVGQQ
Sbjct: 714  TMRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVAGSKGSFINISQMSACVGQQ 773

Query: 674  SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
             V G+R P GF DR+LPHF +    P +KGF+ NS+  GL+  EFFFH M GREGL+DTA
Sbjct: 774  MVEGKRVPFGFADRTLPHFCKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTA 833

Query: 734  VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS-----G 788
            VKTA+TGY+ RRL+KALED+ +QYD +VRN+ G ++QF+YG+DG+D A +E ++     G
Sbjct: 834  VKTAETGYIQRRLVKALEDVMVQYDGTVRNSLGDVIQFVYGEDGLDGAQVEKQTVDTIPG 893

Query: 789  EPLNFDRL----LM--KVKATCPPAGQRYLSPQQVSEIVEK---QLAAYGKESCSEAFLN 839
               +F+R     LM  K K     +G   +   +V  ++++   QL    +    E F N
Sbjct: 894  SDESFERRYKIDLMNPKTKPLNIESGNDIVGDVEVQRVLDEEYNQLLTDRRLLREEVFTN 953

Query: 840  ---------SLRKFFEGQQDKLDKKIKFVEDI-------GWDDKSQILEEVTHKTSGITE 883
                     ++R+  +  Q   +     V D+       G     + L  V   +S   E
Sbjct: 954  GDHNWPLPVNIRRVVQNSQRIFNVDKSKVSDLTIPEIVEGVQSLCKRLTIVRGDSSLAKE 1013

Query: 884  KQ------LEVFIQTCF------SRYRVKR------------------VEAGTAIGAIGA 913
             Q       +  +++ F        YR+ R                  V  G  +G I A
Sbjct: 1014 AQENATMLFQCLVRSRFPTKRVIEEYRLNRAAFEWVMGEIETQFAKSVVHPGEMVGVIAA 1073

Query: 914  QSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELE---CNDNE 970
            QSIGEP TQMTL TFH+AGV+S N+T GVPR+KEI+N AK I TP +T  LE     D E
Sbjct: 1074 QSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEPSVAADIE 1133

Query: 971  NAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESI-V 1029
              A+VV+  IE T L  V  + +I       + VI  D++T+ DA+  I  + V+ ++  
Sbjct: 1134 K-AKVVQSAIEHTSLKNVTAATEIYYDPDPRTTVIEEDIDTV-DAYFSIPDETVEATLDN 1191

Query: 1030 QTPK-IKLKQQHIKVLDFRKLEIFPPVDK-----SKIHFELYSLKNVLPMVI----VKGI 1079
            Q+P  ++L+    K+LD ++L +     K      +  F ++S  N   ++I    V+  
Sbjct: 1192 QSPWLLRLELDRAKMLD-KQLTMSQVAQKISSSYGEDLFVMWSEDNADKLIIRCRVVRDP 1250

Query: 1080 KTVERVVIAEKEKEKRKVK---------------------------------ENGEKKKY 1106
            KT+E  V AE+++  ++++                                 +   K ++
Sbjct: 1251 KTLEEDVDAEEDQMLKRIEGHMLDSISLRGIEGIDRVFMMEHKMSVPDEVTGDYKTKMEW 1310

Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  +G  L  VM  +G+D  +T SN   EV   LGIEA R  +  EI   +   G  ++
Sbjct: 1311 VLETDGINLAEVMAVDGVDPYRTYSNSFVEVLSVLGIEATRSALYREILNVIAFDGSYVN 1370

Query: 1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
             RHM LL D+MT RG ++ ITR GI + D   LM  SFE+T + L  A+     D   GV
Sbjct: 1371 YRHMALLVDVMTSRGYLMAITRHGINRADTGALMRCSFEETVEILLEAAAVAELDDCRGV 1430

Query: 1227 SECIIMGIPMPLGTG 1241
            SE I++G   PLGTG
Sbjct: 1431 SENIMLGQLAPLGTG 1445


>gi|213404374|ref|XP_002172959.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
            japonicus yFS275]
 gi|212001006|gb|EEB06666.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
            japonicus yFS275]
          Length = 1748

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1287 (34%), Positives = 681/1287 (52%), Gaps = 170/1287 (13%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +LNP+ V  +FK ++  D   + L+E   RP+ +IIT + VPP ++RPS+ +DGS   E+
Sbjct: 207  LLNPLEVHTIFKHISSEDLVYMGLNEQYARPDWMIITVLPVPPPSVRPSISVDGSSRGED 266

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
            D+T +L  II+ NA++++   E   A       + LQ  VA Y+++++ G P ++Q + R
Sbjct: 267  DLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQLLQFHVATYMDNEIAGQPQALQKSGR 326

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            PL     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + E+ +P  +A+ LTYPE V
Sbjct: 327  PLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRTIAKTLTYPETV 386

Query: 261  SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
            + +NI +L++ ++NGPD++PGA+ I   D   R+     +    + L+ G  V+RH+ DG
Sbjct: 387  TPYNIYQLQELVRNGPDEHPGAKYI-IRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDG 445

Query: 321  DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
            DVV+FNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMNMHVPQ+EE R 
Sbjct: 446  DVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRA 505

Query: 381  EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGM 438
            E   +  V   + +P++ + ++   QD L      + +D F  R     +  ++   DG+
Sbjct: 506  EIQEIAMVPRQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLSRDVVMNIMLWVPNWDGV 565

Query: 439  DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKE--KTYSNKLIRTEGDEE 496
                +P P ILKP  LWTGKQ+ S++I P       +NLT  +  +TY N          
Sbjct: 566  ----VPPPVILKPKPLWTGKQILSLVI-PKG-----INLTRDDDKQTYIN---------- 605

Query: 497  IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
                   PND  +   N +++ G + K T+G  ++ GL   + ++ G        N + +
Sbjct: 606  -------PNDKGMLIENGDIVYGVVDKKTVG-ASQGGLVHTIWKEKGPEVCKSFFNGIQR 657

Query: 557  LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
            +   W+ ++GFSIGI D            + + +        IK+  + +L+ +PG    
Sbjct: 658  VVNFWLLHNGFSIGIGDTIADLATMKDITRTVKDARRQVTECIKDAQQNRLKPEPGMTLR 717

Query: 617  QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
            +T EA ++ ILN+ R++AG++   SL   N+   M   GSKGS INISQM ACVGQQ V 
Sbjct: 718  ETFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVASGSKGSFINISQMSACVGQQIVE 777

Query: 677  GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
            G+R P GF  R+LPHFP+    P ++GF+ NS+  GL+  EFFFH M GREGL+DTAVKT
Sbjct: 778  GKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKT 837

Query: 737  ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
            A+TGY+ RRL+KA+ED+ ++YD +VRNA G IVQF YG+DG+D   +E +  + L    +
Sbjct: 838  AETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIVQFAYGEDGLDATIVEYQVFDALRLSNV 897

Query: 797  ---------LMKVKATC------------------------------------PPAGQRY 811
                     L++ K  C                                    P    R+
Sbjct: 898  DFEKKYRIDLVEDKKICLHMENSIEGDVAMQELLDEEYSQLLTDRELCRGFIFPNGEARW 957

Query: 812  LSPQQVSEIVEKQLAAYGKESCSEAFL----------NSLRKF--FEGQQDKLDKKIKFV 859
              P  V  I++  +  +  +S     L          N + K   F G  D++ K+I+  
Sbjct: 958  PQPVNVHRIIQNSVQIFHLDSKKPTDLLPSDIIYGVRNLISKLSVFRG-DDRITKEIQ-- 1014

Query: 860  EDIGWDDKSQILEEVTHKTSGITEK-QLEVFIQTCFSRYRVKRVEA---------GTAIG 909
                  + + +L ++  ++   T++  +E  +      + +  +EA         G  +G
Sbjct: 1015 ------ENATLLFQILLRSKLATKRVVMEYHLNKIAFEWIIGEIEARFQQCQVNPGEMVG 1068

Query: 910  AIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECN 967
             + AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEI+N AK I TP +T  L  E  
Sbjct: 1069 TLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYLLPEIA 1128

Query: 968  DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKES 1027
             N + A+ V+ +IE T L  V  + +I       + VI  D + ++ A   I  + V+E+
Sbjct: 1129 SNMDLAKNVQTQIEHTTLKTVTSATEIHYDPDPQNTVIDEDRDFVE-AFFAIPDEEVEEN 1187

Query: 1028 IV-QTPK-IKLKQQHIKVLDFRKLEIFPPVDKSKIHFE-----LYSLKNVLPMVI----- 1075
            +  Q+P  ++L+    K+LD +KL +     K    FE     ++S  N   ++I     
Sbjct: 1188 LYKQSPWLLRLELDRAKMLD-KKLSMSDVAGKIAESFERDLFTIWSEDNAEKLIIRCRII 1246

Query: 1076 --------------------------------VKGIKTVERVVIAEKEKEKRKVKENGE- 1102
                                            ++G+  + RV +     E + V +N + 
Sbjct: 1247 RDDDKKADEDDGLIEEDIFLKTIEGHMLESISLRGVPNITRVYMM----EHKIVHQNDDG 1302

Query: 1103 ----KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETM 1158
                  ++ L  +G  L   M  EG+D  +T SN   EV Q LGIEA R  ++ E+   +
Sbjct: 1303 VFVRDDEWVLETDGINLAESMAVEGVDPSRTYSNSFVEVLQVLGIEATRSALLKELRNVI 1362

Query: 1159 KAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNG 1218
            +  G  ++ RH+ LL D+MT RG ++ ITR GI + +   LM  SFE+T + L +A+ +G
Sbjct: 1363 EFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASG 1422

Query: 1219 RDDRIEGVSECIIMGIPMPLGTGILKI 1245
              D   GVSE I++G   P+GTG   +
Sbjct: 1423 EKDGCRGVSENIMLGQLAPMGTGSFDV 1449


>gi|3172136|gb|AAC18417.1| RNA polymerase II largest subunit [Acanthamoeba castellanii]
          Length = 1569

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/1298 (34%), Positives = 692/1298 (53%), Gaps = 166/1298 (12%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L    V  + K ++D DC  +       RP+ +IIT + +PP  +RPS+ MD +   E+
Sbjct: 129  LLTAEKVHAILKLISDEDCLAMGFDPKWARPDWMIITIMPIPPPPVRPSITMDSAARGED 188

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGW--ETLQVEVAQYINSDVRGVPFSM--Q 197
            D+T +L  II+ NA+L+++  EAN A   +     E LQ  +A +I++++ G P +    
Sbjct: 189  DLTHKLADIIKANANLRKQ--EANGAAAHIISQFQELLQYHIATFIDNEIPGFPQATVRS 246

Query: 198  VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYP 257
             +R L    QRL+GK+GR RGNL GKRV+++ RTVI+ DPN+ I EV +P  +A  LTYP
Sbjct: 247  GSRALKSLKQRLRGKEGRIRGNLMGKRVDFSARTVITGDPNISIDEVGVPRSIALNLTYP 306

Query: 258  ERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHL 317
            E V+  NI+K+ + I+NGP ++PGA+ I   DG  R+     R    + L+ G  V+RH+
Sbjct: 307  ELVTPFNIDKMYELIRNGPTEHPGAKYIIRDDG-QRLDLRFARKASDLHLEYGYKVERHI 365

Query: 318  EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            +DGDV++FNRQPSLH+MS+M H+ +IMP+ T R N SV  PYNADFDGDEMNMHVPQT  
Sbjct: 366  QDGDVIIFNRQPSLHKMSMMGHKVKIMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQTPG 425

Query: 378  ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMG 435
            AR E + LM V   + T ++ + ++   QD L    L+T++DTF ++      LM     
Sbjct: 426  ARAEVIELMMVPKQIVTAQSNKPVIGIVQDTLLGGCLLTQRDTFIEKDVMMNILMWLESW 485

Query: 436  DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
            DG     +PTP ILKP +LWTGKQ+FS++I  + N   +VN                 DE
Sbjct: 486  DGT----VPTPTILKPKQLWTGKQVFSLIIPRNTN---FVN---------------ADDE 523

Query: 496  EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
            E     M   D  V     EL+SG L K TLG  +K  L  V+  ++G+      +N++ 
Sbjct: 524  E---PDMSFTDNKVLIEEGELVSGILNKKTLGTSHK-SLVHVIWNEHGSEVCKHFLNQVQ 579

Query: 556  KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
             +   W+ +HGFS+G+ D    +E   K  + I +  +    +  E  +G+L+ +PG   
Sbjct: 580  HVVNYWLLHHGFSVGVGDTIADEETLAKITQTIRKAKDEVKERQLEAQQGQLERQPGRTM 639

Query: 616  AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
             ++ E VI  ILN+ R+DAG +   SL   N+   M   GSKGS INISQ++ACVGQQ+V
Sbjct: 640  MESFEFVINQILNKARDDAGNSAQKSLRRSNNFKAMVIAGSKGSAINISQVLACVGQQNV 699

Query: 676  GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
             G+R P  F DR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVK
Sbjct: 700  EGKRIPFCFRDRTLPHFVKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 759

Query: 736  TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR 795
            TA+TGY+ RRL+KALED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L    
Sbjct: 760  TAETGYIQRRLVKALEDVMVKYDYTVRNSLGDVIQFLYGEDGMDGQTVETQPLDALKMSN 819

Query: 796  ----LLMKVKATCPPAGQRYLSP--------------------QQV---SEIVEKQLAAY 828
                L  +     P  G+ ++ P                    +Q+     ++ +++   
Sbjct: 820  EGVVLKYQHDYDSPSWGEGWIDPVIADAIANSPEKKRILDKEFEQILADRRLLREKIFLA 879

Query: 829  GKE------SCSEAFLNSLRKFFEGQQDKLD-KKIKFVEDIGWDDKSQIL----EEVTHK 877
            G +      + +   LN+ + F  G +   D    + VED+G   +  ++    ++++ +
Sbjct: 880  GDDRWPLPVNLTRMILNAQKIFHLGPKKVSDLDPCQIVEDLGNLIERLVVIPGQDDISKE 939

Query: 878  TSGITEKQLEVFIQ-TCFSR-----YRVKRVEAGTAIGAIG---AQSIGEPG-------- 920
                      + ++ T  SR     YR+ ++     +G I     +S+ +PG        
Sbjct: 940  AQANAILLFSILLRFTLASRRVLQEYRLDQISWDWLLGEITDRFYKSLCDPGEMIGALAA 999

Query: 921  -------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELE--CNDNEN 971
                   TQMTL TFHFAGV++ N+T GVPR+KE+IN AK I TP +T  LE  C+ +  
Sbjct: 1000 QSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINIAKTIKTPSLTVYLEPHCSRDHE 1059

Query: 972  AARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQT 1031
            AA+ V+  ++ T L  V  + +I       + VI  D + ++   L    +I   ++  +
Sbjct: 1060 AAKNVQCSLQHTTLRDVTAATEIFYDPDPVNTVITEDQDFVRAYFLMPEEEINTSNL--S 1117

Query: 1032 P---KIKLKQQHIKVLDFRKLEIFPPVDKSKIHFE-------LYSLKNVLPMVI------ 1075
            P   +I+L ++ +        EI       +IH +       +Y+  N   +++      
Sbjct: 1118 PWLLRIELNREKMTDTKLSMQEI-----AERIHADFGGDLNCIYNDDNADKLILRIRINN 1172

Query: 1076 --------------------------------VKGIKTVERVVIAEKEKEKRKVKENGEK 1103
                                            +KGI+ +++V I E +K K  +   GE 
Sbjct: 1173 DEENKAPDQEGSVGDDDVFLKQIESNMLTEMDLKGIEGIKKVFIRE-DKNKVAIDARGEY 1231

Query: 1104 KKYRLLV---EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKA 1160
             K   LV   EGT L AVM    +D  +T SN+I E  + LGIEA R  ++ E+   +  
Sbjct: 1232 TKANELVLDTEGTNLLAVMSHPDVDHTRTTSNNIIETIEVLGIEAVRNALLRELRNVISF 1291

Query: 1161 HGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRD 1220
             G  ++ RH+ +LAD+MT+RG ++ ITR GI +++   LM  SFE+TAD L  A+     
Sbjct: 1292 DGAYVNYRHLAILADVMTYRGHLMAITRHGINRVETGCLMRCSFEETADILLEAATFSEL 1351

Query: 1221 DRIEGVSECIIMGIPMPLGTGILKI-----RQRDAVPP 1253
            D + GVSE I++G   PLGTG   +     + +DA+ P
Sbjct: 1352 DPLSGVSENILLGQLPPLGTGCFDLFLNESKLKDAIEP 1389


>gi|254571371|ref|XP_002492795.1| RNA polymerase II largest subunit B220 [Komagataella pastoris GS115]
 gi|238032593|emb|CAY70616.1| RNA polymerase II largest subunit B220 [Komagataella pastoris GS115]
 gi|328353197|emb|CCA39595.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
            7435]
          Length = 1743

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1275 (34%), Positives = 670/1275 (52%), Gaps = 144/1275 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L P  +L +FK ++  DC  L  +E   RPE +IIT + VPP  +RPS+ MD +   ++
Sbjct: 202  LLTPGEILNVFKHISPEDCFRLGFNEDYARPEWMIITVLPVPPPQVRPSIAMDETTQGQD 261

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
            D+T +L  I++ N ++Q+  ++ +         + LQ  VA Y+++D+ G P ++Q + R
Sbjct: 262  DLTHKLSDILKANINVQKLEMDGSPQHIINEVEQLLQFHVATYMDNDIAGQPQALQKSGR 321

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            P+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +PI +A+ L+YPE V
Sbjct: 322  PVKAIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPISIAKTLSYPETV 381

Query: 261  SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
            + +NI +L + ++NGP+++PGA+ +   +G  R+     +    + L+ G  V+RHL D 
Sbjct: 382  TQYNIHRLTEYVRNGPNEHPGAKYVIRDNGD-RIDLRYHKRAGDIVLQYGWKVERHLMDD 440

Query: 321  DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
            D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R 
Sbjct: 441  DPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRA 500

Query: 381  EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYMGDGM 438
            E   L  V   + +P++ + ++   QD L     +T +DTF  Y++    L      DG+
Sbjct: 501  ELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIEYEQVMNMLFWVPSWDGV 560

Query: 439  DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
                +P PAILKP  LWTGKQL S+ I    +++                 RT+G   + 
Sbjct: 561  ----VPQPAILKPKPLWTGKQLLSIAIPSGIHLQ-----------------RTDGGNSL- 598

Query: 499  IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
               + P D  +   + +++ G + K T+G+G   GL   ++R+ G    +     + K+ 
Sbjct: 599  ---LSPKDNGMLIVDGKVMFGVVDKKTVGSGGG-GLIHTVMREKGPKICAELFGNIQKVV 654

Query: 559  ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+ ++GFSIGI D         +    IS   E     I +    +L+LKPG    ++
Sbjct: 655  NYWLLHNGFSIGIGDAIADASTMKEITHAISSAKEQVQEIIYKAQHNELELKPGMTLRES 714

Query: 619  LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
             E  ++  LN  R+ AG++   +L   N+   M   GSKGS INI+QM ACVGQQ V G+
Sbjct: 715  FEGEVSRTLNDARDSAGRSAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQMVEGK 774

Query: 679  RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
            R   GF DRSLPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DTAVKTA+
Sbjct: 775  RIAFGFADRSLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 834

Query: 739  TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS-----GEPLNF 793
            TGY+ RRL+KALED+ + YD + RN+ G I+QFLYG+DG+D   +E ++     G    F
Sbjct: 835  TGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFLYGEDGLDGTQVERQTIDTIPGSDKAF 894

Query: 794  DRL----LMKVKATCPPAGQRYLSPQQVSEIVEKQL-AAYGKESCSEAFLNSLRKFFEGQ 848
             +     LM  K +  P    Y +       ++K+L + Y +      FL  +  F  G 
Sbjct: 895  HKRYYVDLMDEKNSIKPDVIEYAADILGDVELQKELNSEYEQLVSDRKFLREI-VFVNGD 953

Query: 849  QD-----KLDKKIKFVEDIGWDDKSQ----ILEEVTHKTSGITEK--------------- 884
             +      L + I+  + I   D+++     + E+ H    + +K               
Sbjct: 954  HNWPLPVNLRRIIQNAQQIFHLDRAKASDLTIPEIIHGVRDLCKKLFVLRGENELIKEAQ 1013

Query: 885  QLEVFIQTCFSR-----------YRVKRVEAGTAIGAIGAQ---SIGEPG---------- 920
            Q    +  C  R           +R+ R      +G I AQ   S+  PG          
Sbjct: 1014 QNATSLFQCLVRARLATRRILEEFRLNRDAFEWVLGTIEAQFQRSLVHPGEMVGVIAAQS 1073

Query: 921  -----TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDNENAA 973
                 TQMTL TFH+AGV+S N+T GVPR+KEI+N AK I TP +T  L  E   +   A
Sbjct: 1074 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDREIALDIEKA 1133

Query: 974  RVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESI-VQTP 1032
            +V++  IE T L  V  + +I       S VI  D +T++ A+  I  + V+E+I  Q+P
Sbjct: 1134 KVIQSSIEYTTLKNVTSATEIYYDPDPTSTVIEEDFDTVE-AYFSIPDEKVEETIDKQSP 1192

Query: 1033 K-IKLKQQHIKVLDFRKLEIFPPVDK-----SKIHFELYSLKNVLPMVI----VKGIKTV 1082
              ++L+    ++LD ++L +    DK     S   F ++S  N   ++I    ++  K +
Sbjct: 1193 WLLRLELDRARMLD-KQLTMNQVADKISEVFSDDLFVMWSEDNADKLIIRCRVIRDPKAM 1251

Query: 1083 ERVVIAEKEKEKRKVK-----------------------------ENGEKKK---YRLLV 1110
            +  + AE+++  ++++                             E+GE K    + L  
Sbjct: 1252 DEELEAEEDQMLKRIEAHMLDLIALRGIPGISKVYMVKHKVSVPDESGEYKNEELWALET 1311

Query: 1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
            +G  L  VM   G+D  +T SN   E+   LGIEA R  +  EI   +   G  ++ RHM
Sbjct: 1312 DGINLAEVMAVPGVDSSRTYSNSFVEILSVLGIEATRSSLYKEILNVIAFDGSYVNYRHM 1371

Query: 1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
             LL D+MT RG ++ ITR GI + D   LM  SFE+T + LF A      D   GVSE +
Sbjct: 1372 ALLVDVMTSRGYLMAITRHGINRADTGALMRCSFEETVEILFEAGAAAELDDCRGVSENV 1431

Query: 1231 IMGIPMPLGTGILKI 1245
            ++G   P+GTG   +
Sbjct: 1432 MLGQLAPMGTGAFDV 1446


>gi|167044066|gb|ABZ08751.1| putative RNA polymerase Rpb1, domain 2, partial [uncultured marine
            crenarchaeote HF4000_APKG4H17]
          Length = 993

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1086 (37%), Positives = 608/1086 (55%), Gaps = 118/1086 (10%)

Query: 177  LQVEVAQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISP 235
            LQ     Y +++V G+P +     RPL    QRLKGK+GRFRG+LSGKRV+++ RTVISP
Sbjct: 1    LQYHTTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISP 60

Query: 236  DPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA-RV 294
            DPNL + EV +P+++A  LT PE V++ NIEKL++ + NGPD +PG   I  PDG   R+
Sbjct: 61   DPNLDLGEVGVPVQVATKLTIPEIVTEWNIEKLKKLVINGPDTFPGVNYIVRPDGVKIRL 120

Query: 295  LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNES 354
             + + R+ +A  L+ G +V+RHL DGDVVLFNRQPSLH+MSIM H  R++P +T R + S
Sbjct: 121  DFVEDRSIIADSLEIGYLVERHLSDGDVVLFNRQPSLHQMSIMAHHVRVLPGKTFRLHPS 180

Query: 355  VCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFL 414
            VC PYNADFDGDEMN+HVPQ+EEAR EA++LM VQ  L +P+ G  ++   +DF+T ++L
Sbjct: 181  VCPPYNADFDGDEMNLHVPQSEEARAEAIMLMRVQEQLISPRFGGPIIGGLRDFITGAYL 240

Query: 415  ITRKDTFYDRAAFSLMCCYMG-DGMDRVDLPTPAIL-KPVELWTGKQLFSVLIRPHANMR 472
            +T+ DT   +  FS      G DG    +LP P I  K   L+TGKQLFS+ +    N+ 
Sbjct: 241  LTKDDTTLTKQEFSNFAMLGGYDG----ELPEPKIKNKNGPLYTGKQLFSLFLPSDFNLI 296

Query: 473  VYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKD 532
                LT K    +N  ++                  +  +N EL+SG + K+++G    +
Sbjct: 297  ----LTSKWSKGTNGKLKD-----------------IVIKNGELVSGVIDKSSIGAEEPE 335

Query: 533  GLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK-KGKLIS-- 589
             +   + +DYG       +N +  +  ++I N+GFS G  D+    ELSDK +G +++  
Sbjct: 336  SVLHRIAKDYGNEKAKTFLNSILIIIKQFITNYGFSYGYSDL----ELSDKDRGAILTDL 391

Query: 590  -ENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSP 648
             E Y+     I + N+G L+   G   A+T EA+IT  L R R+ AG     +L   N+ 
Sbjct: 392  QETYDKVADIISQKNKGTLKGLRGLTVAETAEALITYELARARDRAGITANSNLADDNAG 451

Query: 649  LIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANS 708
             IM+  G++GS +N+ QM   +GQQS  G+R   G+ +R+LPHF      P + GFV ++
Sbjct: 452  KIMATTGARGSALNVGQMAGALGQQSRRGKRLHTGYGNRTLPHFKEHDDNPDSHGFVKSN 511

Query: 709  FYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCI 768
            F  GLS  EFFFH MGGREGLVDTAV+T  +GYM RRLI ALE + ++YDN+VR+  G I
Sbjct: 512  FRDGLSVLEFFFHAMGGREGLVDTAVRTQQSGYMQRRLINALEHIRLEYDNTVRDPHGHI 571

Query: 769  VQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAY 828
            +QFLYG+DG+D A  +   GE  N +RL                       I  K +   
Sbjct: 572  IQFLYGEDGIDVAKSD--HGEAFNINRL-----------------------IESKSIIDT 606

Query: 829  GKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEV 888
            G ++  +   N  +K+ +    +L               + ++ +  HK S +++  LE 
Sbjct: 607  GSKATKDEITNISKKYTKTFNPRL---------------TSMVNDALHK-SNLSKAGLED 650

Query: 889  FIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEI 948
              +     Y   +VE G A+G + AQSIGEPGTQMTL+TFH AG+A  N+T G+PRI E+
Sbjct: 651  VCKKGLELYDKSQVEPGQAVGIVTAQSIGEPGTQMTLRTFHTAGIAEKNVTLGLPRIIEL 710

Query: 949  INGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALD 1008
            ++  K+ STP +   L+ +   +  + +          + AK+I     S L +  +  D
Sbjct: 711  VDARKKPSTPSMDIYLDKDSKSSKEKAI----------ETAKNILQTTVSDLLTHPVETD 760

Query: 1009 MET-----IQDAHL----CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK 1059
             +T     I DA L    C   D++  + ++T K   K + I   +   L+    +D + 
Sbjct: 761  YQTKITLTIDDARLKTRGCAFEDVM--AALETNK---KFKAICDNNTITLQFVDELDAAA 815

Query: 1060 IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVM 1119
            +      L+N +    V+G+  + R+ + E         ENGE   + +   G+ L  V+
Sbjct: 816  V----VVLRNKVLKTTVRGVPDIARLTLKE---------ENGE---WLIQTTGSNLAEVL 859

Query: 1120 GAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTF 1179
              +G+D    ++N++FE+   LGIEAAR  +I+E+  T++  G+ +D R++ML+ADLM  
Sbjct: 860  SVKGVDRNNVRTNNVFEISTVLGIEAARNSLINELKGTLENQGLEVDIRYLMLVADLMCH 919

Query: 1180 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLG 1239
            +G +  I R GI     SVL  A+FE T   + NA+  G  + ++G++E +I+G  +P+G
Sbjct: 920  KGHLQQIGRHGIAGTKDSVLARAAFEITVPTIANAAKLGEIEELKGITENVIVGSQIPIG 979

Query: 1240 TGILKI 1245
            +G + I
Sbjct: 980  SGTVDI 985


>gi|328867419|gb|EGG15801.1| RNA polymerase II largest subunit [Dictyostelium fasciculatum]
          Length = 1701

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/1332 (34%), Positives = 692/1332 (51%), Gaps = 168/1332 (12%)

Query: 64   EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNI 120
            EF      T E K+       IL+   V  + KR++D D   + L+    RP+ +++T +
Sbjct: 164  EFKDVADETVEKKS-------ILSAERVHNILKRISDDDARSMGLNPDWARPDWMVVTVL 216

Query: 121  AVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
             VPP  +RPS++MD +   E+D+T +L  I++ N  L+++      A       + LQ  
Sbjct: 217  PVPPPPVRPSIMMDTASRGEDDLTHKLADIVKANRELKKQEKNGVPAHIITEATQFLQFH 276

Query: 181  VAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
            VA Y+++++ G+P + Q + RPL    QRLKGK+GR RGNL GKRV+++ RTVI+ DPNL
Sbjct: 277  VATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNL 336

Query: 240  KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF 299
             I +V +P  +A  LTYPE V+  NI+++R+ I+ GPD++PGA+ +   DG    L  +F
Sbjct: 337  SIDQVGVPRSIALNLTYPETVTPFNIDRMRELIRRGPDEHPGAKYVIREDGQRFDL--RF 394

Query: 300  RNQLA-VELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNP 358
              +L    L+ G  V+RH++DGDVV+FNRQPSLH+MS+M HR ++MP+ T R N SV  P
Sbjct: 395  VKKLTDTHLEVGYKVERHVQDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTTP 454

Query: 359  YNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK 418
            YNADFDGDEMN+HVPQT E R E + +M V   + +P++   ++   QD L  S L T++
Sbjct: 455  YNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDSLLGSRLFTKR 514

Query: 419  DTFYDRAAFS--LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
            DTF +R      LM     DG     +P PAI KP +LWTGKQ+FS++I         +N
Sbjct: 515  DTFIERDLMMNILMWLPSWDG----KIPPPAIWKPKKLWTGKQIFSLIIPK-------IN 563

Query: 477  LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
            LT        +   T  D+E     M  +D  V     EL+SG L K +LG+ N   +  
Sbjct: 564  LT--------RFTSTHNDKEKEKSEMA-SDTVVIIDQGELMSGILCKRSLGSANG-SIIH 613

Query: 537  VLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVC 595
            V+  ++G  AT   +++   +   W+ +HGF++GI D +     ++  +  + S   +V 
Sbjct: 614  VVQNEHGHEATRCFIDQTQTVVNSWLISHGFTVGIGDTIADSATMAKVQNAITSAKTQVK 673

Query: 596  NVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCG 655
             + IK     + + +PG    ++ E  +  +LN  R+DAG +   SL   N+   M   G
Sbjct: 674  ELIIKA-QSNQFECQPGKSMLESFEKEVNRVLNTARDDAGTSAQKSLQESNNVKAMVNAG 732

Query: 656  SKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSA 715
            SKGS INISQM+ACVGQQ+V G+R P GF +R+LPHF +    P ++GFV NS+  GL+ 
Sbjct: 733  SKGSFINISQMMACVGQQNVEGKRIPFGFQNRTLPHFTKDDYGPESRGFVENSYLRGLTP 792

Query: 716  TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFL--- 772
             EFFFH MGGREGL+DTAVKT++TGY+ RRL+KA+ED+S++YD +VRN+ G ++QF    
Sbjct: 793  QEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSVRYDATVRNSLGDVIQFAYGE 852

Query: 773  -----------------------------------YGDDGMDPANME------------G 785
                                               YGD  MDP  +E             
Sbjct: 853  DGLDGCSVETQSFDSLKKDNNDFVKMFKHQIDRLDYGDSWMDPLVVEEIRNDATIRETLD 912

Query: 786  KSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFF 845
            +  + L FDR  M+ +   P     +  P  +  ++      +  +  + + LN      
Sbjct: 913  REFKRLEFDRHQMRTE-IIPTGESSWPLPVNLKRLINNAQKIFSIDYRTISDLNPATVV- 970

Query: 846  EGQQDKLDKKIKFV---EDIG---------------WDDKSQ-------ILEEVTHKTSG 880
                D+L  +++ V   E IG               W++  Q       IL   T  +  
Sbjct: 971  -TAIDRLISRLRIVPHQEPIGLSSEEELERQHYDKAWNETHQNATMLFAILLRSTFASRR 1029

Query: 881  I------TEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 934
            +      T K  E       S++       G  +GA+ AQSIGEP TQMTL TFH+AGV+
Sbjct: 1030 VLDEFRLTSKAFEWVCGEVESKFMTSLANPGEMVGALAAQSIGEPATQMTLNTFHYAGVS 1089

Query: 935  SMNITQGVPRIKEIINGAKRISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKS 991
            S N+T GVPR+KEIIN AK + TP +T  L+     D+E A + V+ ++E T + +V  +
Sbjct: 1090 SKNVTLGVPRLKEIINVAKNVKTPSLTIYLQPDIARDSEKA-KSVQCQLEYTTMARVTAA 1148

Query: 992  IKIVMTSRLASIVIALDMETIQDAHLCINADI-------------VKESIVQTPKIKLKQ 1038
             +I       + VI  D+E +    +  + +I             +   +V   K+ L +
Sbjct: 1149 TEIYYDPEPNTTVIEEDLEFVTRYMMLPDEEINEGALSPWLLRVELDREMVTDKKLSLYE 1208

Query: 1039 --QHIKVLDFRKLE-IFPPVDKSKIHFELYSLKN---------------------VLPMV 1074
              Q IK  DF KL  IF   +  K+   + ++ +                     +L  +
Sbjct: 1209 ITQCIKK-DFDKLNCIFSDDNADKLIIRIRTIMDNENKESANDDDDTFLRRVESMMLSQM 1267

Query: 1075 IVKGIKTVERVVIAEKEKEKRKVKENG--EKKKYRLLVEGTGLQAVMGAEGIDGCKTKSN 1132
            ++ GI  +++V +   ++            KK++ L  +G  L  VM    +D  +T SN
Sbjct: 1268 VLCGIPNIKKVFMRNDDRSMINPDTGAYYTKKEWVLDTDGVNLLEVMSHPDVDFSRTVSN 1327

Query: 1133 HIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQ 1192
             I E+ Q LGIEA R  ++ E+   +   G  ++ RH+ +LAD+MT+RG ++ ITR GI 
Sbjct: 1328 DIVEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAMLADVMTYRGHLMAITRHGIN 1387

Query: 1193 KMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIR-QRDAV 1251
            +++   LM  SFE+T + L  A++    D I GV+E II+G   PLGTG  ++   +D +
Sbjct: 1388 RVESGPLMRCSFEETVEILMEAALFSETDNICGVTENIILGQLPPLGTGSFEVYLNQDMI 1447

Query: 1252 PPMLKYGAPDPI 1263
                    P+P+
Sbjct: 1448 KNAHSISLPEPM 1459


>gi|334187204|ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
 gi|322510106|sp|P18616.3|RPB1_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit B1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit
 gi|332661173|gb|AEE86573.1| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
          Length = 1839

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1279 (34%), Positives = 667/1279 (52%), Gaps = 148/1279 (11%)

Query: 91   VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
            VL + KR++D DC++L  +    RP+ +I+  + +PP  +RPSV+MD +  +E+D+T +L
Sbjct: 218  VLSVLKRISDADCQLLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQL 277

Query: 148  KRIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQVA-RPLSG 204
              II+ N +L+++  E N A   +    T  LQ  +A Y ++++ G P + Q + RP+  
Sbjct: 278  AMIIRHNENLKRQ--EKNGAPAHIISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKS 335

Query: 205  FVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHN 264
               RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  LTYPE V+ +N
Sbjct: 336  ICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYN 395

Query: 265  IEKLRQCIQNGPDKYPGARMIRY--PDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDV 322
            IE+L++ +  GP   PG    +Y   D   R+     +      L+ G  V+RHL+DGD 
Sbjct: 396  IERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDF 455

Query: 323  VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA 382
            VLFNRQPSLH+MSIM HR RIMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E 
Sbjct: 456  VLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 515

Query: 383  LLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF--SLMCCYMGDGMDR 440
            L LM V   + +P+    ++   QD L     IT++DTF ++  F  +LM     DG   
Sbjct: 516  LELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDG--- 572

Query: 441  VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
              +P PAILKP  LWTGKQ+F+++I    N+  Y       +T       T GD ++RIE
Sbjct: 573  -KVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHADTETG----FITPGDTQVRIE 627

Query: 501  TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
                          EL++G L K TLG  N   L  V+  + G  A    +     L   
Sbjct: 628  ------------RGELLAGTLCKKTLGTSNG-SLVHVIWEEVGPDAARKFLGHTQWLVNY 674

Query: 561  WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
            W+  +GF+IGI D        +K  + IS         I+++   +L  +PG     T E
Sbjct: 675  WLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFE 734

Query: 621  AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
              +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R 
Sbjct: 735  NRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 794

Query: 681  PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
            P GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++TG
Sbjct: 795  PFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 854

Query: 741  YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL-----NFDR 795
            Y+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L      FDR
Sbjct: 855  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDR 914

Query: 796  LLMKVKATCPPAGQRYLSPQQ------VSEIVEKQLAAYGK----------------ESC 833
               K +         YLS +       + E+ +   A Y K                +S 
Sbjct: 915  TF-KYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDST 973

Query: 834  SEAFLNSLRKFFEGQQD-KLD-KKIKFVEDIGWDDKSQILEEVTHKTSGI------TEKQ 885
                +N  R  +  Q+  K+D +KI  +  +   D    L+E      G        +K 
Sbjct: 974  WPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDDALSVEAQKN 1033

Query: 886  LEVFI----------QTCFSRYRVKRVEAGTAIGAIGA---QSIGEPG------------ 920
              +F           +     Y++ R      IG I +   QS+  PG            
Sbjct: 1034 ATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIG 1093

Query: 921  ---TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDNENAARV 975
               TQMTL TFH+AGV++ N+T GVPR++EIIN AKRI TP ++  L  E + ++  A+ 
Sbjct: 1094 EPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLTPEASKSKEGAKT 1153

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIK 1035
            V+  +E T L  V ++ ++       S +I  D E ++  +   + D+  + I  +P + 
Sbjct: 1154 VQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDEDVSPDKI--SPWLL 1211

Query: 1036 LKQQHIKVLDFRKLEIFPPVDKSKIHFE-------------------------------- 1063
              + + +++  +KL +    +K  + F+                                
Sbjct: 1212 RIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQ 1271

Query: 1064 ---------LYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRKVKENG---EKKKYRLLV 1110
                     L  ++ N+L  + ++GI  + +V I  K+  K +  E G     +++ L  
Sbjct: 1272 DESAEDDVFLKKIESNMLTEMALRGIPDINKVFI--KQVRKSRFDEEGGFKTSEEWMLDT 1329

Query: 1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
            EG  L AVM  E +D  +T SNH+ E+ + LGIEA R  ++DE+   +   G  ++ RH+
Sbjct: 1330 EGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1389

Query: 1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
             +L D MT+RG ++ ITR GI + D   LM  SFE+T D L +A+     D + GV+E I
Sbjct: 1390 AILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENI 1449

Query: 1231 IMGIPMPLGTGILKIRQRD 1249
            ++G   P+GTG  ++   D
Sbjct: 1450 MLGQLAPIGTGDCELYLND 1468


>gi|302410002|ref|XP_003002835.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium albo-atrum
            VaMs.102]
 gi|261358868|gb|EEY21296.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium albo-atrum
            VaMs.102]
          Length = 1756

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1281 (34%), Positives = 668/1281 (52%), Gaps = 166/1281 (12%)

Query: 94   LFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGS---QSNENDITERL 147
            + +R++D D   + L+    RPE +IIT + VPP  +RPS+ MDG+     NE+D+T +L
Sbjct: 220  ILRRISDDDLRDMGLNLDYARPEWMIITVLPVPPPPVRPSISMDGTGQGMRNEDDLTYKL 279

Query: 148  KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFV 206
              II+ N +++Q + EA+ A  +    + LQ  VA Y+++D+ G P ++Q   RP+    
Sbjct: 280  GDIIRANGNVRQAIREASPAHIARDFEQLLQYHVATYMDNDIAGQPRALQKSGRPVKAIR 339

Query: 207  QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
             RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LTYPE V+ +NI 
Sbjct: 340  ARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNIG 399

Query: 267  KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
            KL + +QNGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL  GD ++FN
Sbjct: 400  KLHELVQNGPNEHPGAKYVIRTDGT-RIDLRHHRRAGQISLEYGWKVERHLMTGDYIIFN 458

Query: 327  RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
            RQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R E   L 
Sbjct: 459  RQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEIKELC 518

Query: 387  GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
             V  N+ +P+    L+   QD L  ++ + R+D F  +     +  ++   DG+    +P
Sbjct: 519  MVPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLTKEEVMNIMLWVPNWDGI----IP 574

Query: 445  TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
             PAIL+P   WTGKQ+ S              + + E    N L  T+ D  ++ E +  
Sbjct: 575  VPAILRPSPRWTGKQIMS--------------MAIPEIVSLNSLPDTKEDNSVKDEGLLI 620

Query: 505  NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
              G       +L+ G L K  +G  +  G+  ++  ++G  A    +N + +    W+ +
Sbjct: 621  QSG-------QLMYGLLTKKVIGAASG-GIVHIVYNEHGPEAAMKFLNGVQQTVNYWLLH 672

Query: 565  HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
            +GFSIGI D  P     +K    I E  +      K+    +L+  PG +  +T E+ ++
Sbjct: 673  NGFSIGIGDTIPDTLTIEKVQGHIDEQKDEVARLTKQATNNELEPSPGMNIRETFESKVS 732

Query: 625  DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
              LN  R+ AG     SL   N+ + M+  GSKGS INISQM A VGQQ V G+R P GF
Sbjct: 733  RALNTARDKAGTTTQKSLKDLNNAVTMALSGSKGSSINISQMTALVGQQIVEGKRIPFGF 792

Query: 685  IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
              R+LPHF +    P A+GFV NS+  GL+ +EFFFH M GREGL+DTAVKTA+TGY+ R
Sbjct: 793  KYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQR 852

Query: 745  RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDG----------MDPANMEGK-------- 786
            RL+KALED+S +YD +VRN+ G I+QFLYG+DG          MD  NM  K        
Sbjct: 853  RLVKALEDVSAKYDGTVRNSLGDIIQFLYGEDGLDAIYIEKQRMDFLNMSNKKFDDRYKL 912

Query: 787  ----SGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLR 842
                + +P   D L    +    PA Q         ++++++  A  ++      +N  R
Sbjct: 913  DVMDANKPEELDWLEYGNEIAGDPASQ---------QLLDEEYEALAEDRRVVREINFRR 963

Query: 843  KFFEGQQDKLD--------KKIKFVEDIGWDD---------KSQILEEVT---------- 875
            K  E  Q  L+        KK+  V+D    D          S +L+ +T          
Sbjct: 964  KDDESMQLPLNIVRIMETAKKLFNVQDFQRSDLTPQDVIPAVSSMLDRMTVVRGPDGLSK 1023

Query: 876  ------------HKTSGITEKQ---LEVFIQTCFS--------RYRVKRVEAGTAIGAIG 912
                        H  S +  K    L+   +  FS        R+    +  G  +G + 
Sbjct: 1024 EADYNATILFKAHIRSRLAFKGVACLQRLNKLAFSHVLGELEGRWAKASISPGEMVGVLA 1083

Query: 913  AQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL-ECNDNEN 971
            AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A+ I TP +   L E N  + 
Sbjct: 1084 AQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAQNIKTPSMVVYLSEGNATQE 1143

Query: 972  AARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ-------DAHLCINAD-- 1022
            AA+ ++  +E T L  V    +I     L + VI  D + ++       D+H   N    
Sbjct: 1144 AAKALRSTVEHTTLRSVTAMTEIYYDPDLENTVIPSDTDMVESYWAIPDDSHESANLQNR 1203

Query: 1023 ------------IVKESIVQTPKIKLKQQHIKVLDF------------RKLEIFPPV--- 1055
                        + KE  V+    ++K  +    +             R   I P     
Sbjct: 1204 WLLRITLDRQKMLDKELTVEDVASRIKADYPNDCNLVFSDNNADEQVIRIRTIKPDKGGD 1263

Query: 1056 DKSKIHFELYSLK----NVLPMVIVKGIKTVERVVIAEKEK-------EKRKVKENGEKK 1104
            D+SK+  ++  LK    ++L  + ++G+  +ER  + ++ K            K +   +
Sbjct: 1264 DESKVEDDVM-LKQFETHLLDTLTLRGVLGIERAFLNKETKLIETDDGALLAAKADDRCQ 1322

Query: 1105 KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMS 1164
            ++ L   GT L +V+  EG+D  +T +NH++++ +  GIEAAR  ++ E+ + +   G  
Sbjct: 1323 EWYLDTSGTSLSSVLMVEGVDATRTYTNHLWQINEVFGIEAARGALVRELTQVLAFDGSY 1382

Query: 1165 IDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIE 1224
            ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SFE+T + L  A+  G  D   
Sbjct: 1383 VNHRHLALLVDVMTYRGGISAVTRHGINRADTGALMRCSFEETVEILLEAAAVGELDDCR 1442

Query: 1225 GVSECIIMGIPMPLGTGILKI 1245
            G+SE +++G   P+GTG  ++
Sbjct: 1443 GISENVMLGQMAPMGTGHFEV 1463


>gi|4883421|emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
            [Arabidopsis thaliana]
 gi|7270532|emb|CAB81489.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
            [Arabidopsis thaliana]
          Length = 1840

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1279 (34%), Positives = 667/1279 (52%), Gaps = 148/1279 (11%)

Query: 91   VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
            VL + KR++D DC++L  +    RP+ +I+  + +PP  +RPSV+MD +  +E+D+T +L
Sbjct: 219  VLSVLKRISDADCQLLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQL 278

Query: 148  KRIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQVA-RPLSG 204
              II+ N +L+++  E N A   +    T  LQ  +A Y ++++ G P + Q + RP+  
Sbjct: 279  AMIIRHNENLKRQ--EKNGAPAHIISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKS 336

Query: 205  FVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHN 264
               RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  LTYPE V+ +N
Sbjct: 337  ICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYN 396

Query: 265  IEKLRQCIQNGPDKYPGARMIRY--PDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDV 322
            IE+L++ +  GP   PG    +Y   D   R+     +      L+ G  V+RHL+DGD 
Sbjct: 397  IERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDF 456

Query: 323  VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA 382
            VLFNRQPSLH+MSIM HR RIMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E 
Sbjct: 457  VLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 516

Query: 383  LLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF--SLMCCYMGDGMDR 440
            L LM V   + +P+    ++   QD L     IT++DTF ++  F  +LM     DG   
Sbjct: 517  LELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDG--- 573

Query: 441  VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
              +P PAILKP  LWTGKQ+F+++I    N+  Y       +T       T GD ++RIE
Sbjct: 574  -KVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHADTETG----FITPGDTQVRIE 628

Query: 501  TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
                          EL++G L K TLG  N   L  V+  + G  A    +     L   
Sbjct: 629  ------------RGELLAGTLCKKTLGTSNG-SLVHVIWEEVGPDAARKFLGHTQWLVNY 675

Query: 561  WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
            W+  +GF+IGI D        +K  + IS         I+++   +L  +PG     T E
Sbjct: 676  WLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFE 735

Query: 621  AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
              +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R 
Sbjct: 736  NRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 795

Query: 681  PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
            P GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++TG
Sbjct: 796  PFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 855

Query: 741  YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL-----NFDR 795
            Y+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L      FDR
Sbjct: 856  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDR 915

Query: 796  LLMKVKATCPPAGQRYLSPQQ------VSEIVEKQLAAYGK----------------ESC 833
               K +         YLS +       + E+ +   A Y K                +S 
Sbjct: 916  TF-KYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDST 974

Query: 834  SEAFLNSLRKFFEGQQD-KLD-KKIKFVEDIGWDDKSQILEEVTHKTSGI------TEKQ 885
                +N  R  +  Q+  K+D +KI  +  +   D    L+E      G        +K 
Sbjct: 975  WPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDDALSVEAQKN 1034

Query: 886  LEVFI----------QTCFSRYRVKRVEAGTAIGAIGA---QSIGEPG------------ 920
              +F           +     Y++ R      IG I +   QS+  PG            
Sbjct: 1035 ATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIG 1094

Query: 921  ---TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDNENAARV 975
               TQMTL TFH+AGV++ N+T GVPR++EIIN AKRI TP ++  L  E + ++  A+ 
Sbjct: 1095 EPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLTPEASKSKEGAKT 1154

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIK 1035
            V+  +E T L  V ++ ++       S +I  D E ++  +   + D+  + I  +P + 
Sbjct: 1155 VQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDEDVSPDKI--SPWLL 1212

Query: 1036 LKQQHIKVLDFRKLEIFPPVDKSKIHFE-------------------------------- 1063
              + + +++  +KL +    +K  + F+                                
Sbjct: 1213 RIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQ 1272

Query: 1064 ---------LYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRKVKENG---EKKKYRLLV 1110
                     L  ++ N+L  + ++GI  + +V I  K+  K +  E G     +++ L  
Sbjct: 1273 DESAEDDVFLKKIESNMLTEMALRGIPDINKVFI--KQVRKSRFDEEGGFKTSEEWMLDT 1330

Query: 1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
            EG  L AVM  E +D  +T SNH+ E+ + LGIEA R  ++DE+   +   G  ++ RH+
Sbjct: 1331 EGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1390

Query: 1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
             +L D MT+RG ++ ITR GI + D   LM  SFE+T D L +A+     D + GV+E I
Sbjct: 1391 AILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENI 1450

Query: 1231 IMGIPMPLGTGILKIRQRD 1249
            ++G   P+GTG  ++   D
Sbjct: 1451 MLGQLAPIGTGDCELYLND 1469


>gi|218200495|gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indica Group]
          Length = 1449

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/1281 (35%), Positives = 677/1281 (52%), Gaps = 156/1281 (12%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            IL+   VL + KR++D DC +L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+
Sbjct: 181  ILSAERVLNVLKRISDEDCLLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTSSRSED 240

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
            D+T +L  II+ N +L+++      A       + LQ  +A Y ++++ G P + Q + R
Sbjct: 241  DLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNELPGQPRATQRSGR 300

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            P+     RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I E+ +P  +A  LTYPE V
Sbjct: 301  PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETV 360

Query: 261  SDHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRH 316
            + +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RH
Sbjct: 361  TPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLEL--GYKVERH 418

Query: 317  LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
            L DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ 
Sbjct: 419  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 478

Query: 377  EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
            E R E L LM V   + +P++   ++   QD L     IT++DT  ++  F  +  +  D
Sbjct: 479  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWED 538

Query: 437  GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
               +V  P PAILKP  +WTGKQ+F+++I    N+   +  +          I T GD  
Sbjct: 539  FDGKV--PAPAILKPRPIWTGKQVFNLIIPKPINL---IRFSAWHSEAETGFI-TPGDTM 592

Query: 497  IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
            +RIE              EL+SG L K TLG      L  V+  + G  A    +     
Sbjct: 593  VRIE------------KGELLSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQW 639

Query: 557  LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
            L   W+  +GFSIGI D         K  + IS+  +     IK+ ++ +L+ +PG    
Sbjct: 640  LVNYWLLQNGFSIGIGDTIADAATMVKINETISKAKDDVKELIKQAHDKQLEAEPGRTMM 699

Query: 617  QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
            ++ E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V 
Sbjct: 700  ESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 759

Query: 677  GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
            G+R P GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT
Sbjct: 760  GKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 819

Query: 737  ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEG--------KSG 788
            ++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E         K G
Sbjct: 820  SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKG 879

Query: 789  EPLNFDRLLMKVKATCPPAGQRYLSPQQVSEI-------------VEK----------QL 825
            E  N  R  +  +   P     Y+ P+ V ++             V+K          ++
Sbjct: 880  EFDNVFRYELDDENWRP----NYMLPEHVDDLKTIREFRNVFEAEVQKLEADRFQLGSEI 935

Query: 826  AAYGKESCSEAFLNSLRKFFEGQQD-KLDKK-------IKFVEDIGWDDKSQILEEVTHK 877
            A  G  +     +N  R  +  Q+  K+D +       ++ VE I  D   + L+ V   
Sbjct: 936  ATTGDNTWPMP-VNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAI--DKLQERLKVVPGD 992

Query: 878  TSGITEKQ------LEVFIQTCFS------RYRVKRVEAGTAIGAIGA---QSIGEPG-- 920
             +   E Q        + +++ F+       YR+ +      IG I +   QS+  PG  
Sbjct: 993  DAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEM 1052

Query: 921  -------------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--E 965
                         TQMTL TFH+AGV++ N+T GVPR++EIIN AK+I TP ++  L  E
Sbjct: 1053 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPE 1112

Query: 966  CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVK 1025
             N  +  A+ V+  +E T L  V  + +I         +I  D+E ++  +   + DI  
Sbjct: 1113 VNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDIDP 1172

Query: 1026 ESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFE-----LYSLKNVLPMVI----- 1075
            + I  +P +   + + +++  +KL +    +K    F+     +++  N   +++     
Sbjct: 1173 DKI--SPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRIT 1230

Query: 1076 --------------------------------VKGIKTVERVVIAEKEKEKRKVKEN--- 1100
                                            ++GI  + +V I  K  +  K ++N   
Sbjct: 1231 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFI--KYGKVNKFEDNVGF 1288

Query: 1101 GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKA 1160
                ++ L+ EG  L AVM  E +D  +T SNH+ EV + LGIEA R  ++DE+   +  
Sbjct: 1289 KADNEWMLVTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISF 1348

Query: 1161 HGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRD 1220
             G  ++ RH+ +L D MT+RG ++ ITR GI + D   LM  SFE+T D L +A+V    
Sbjct: 1349 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAES 1408

Query: 1221 DRIEGVSECIIMGIPMPLGTG 1241
            D + GVSE I++G   P+GTG
Sbjct: 1409 DYLRGVSENIMLGQLAPIGTG 1429


>gi|242078217|ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
 gi|241940227|gb|EES13372.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
          Length = 1857

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/1290 (35%), Positives = 677/1290 (52%), Gaps = 174/1290 (13%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            IL+   VL + KR++D DC +L L+    RP+ +I+  + VPP  +RPSV+MD S  +E+
Sbjct: 210  ILSAERVLNVLKRISDEDCLLLGLNPKYARPDWMILQVLPVPPPPVRPSVMMDTSSRSED 269

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VAR 200
            D+T +L  II+ N +L+++      A       + LQ  +A Y ++++ G P + Q   R
Sbjct: 270  DLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNELPGQPRATQRSGR 329

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            P+     RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I E+ +P  +A  LTYPE V
Sbjct: 330  PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETV 389

Query: 261  SDHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRH 316
            + +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RH
Sbjct: 390  TPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLEL--GYKVERH 447

Query: 317  LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
            L DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ 
Sbjct: 448  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 507

Query: 377  EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
            E R E L LM V   + +P++   ++   QD L     IT++DT  ++  F  +  +  D
Sbjct: 508  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQD 567

Query: 437  GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
               ++  P PAILKP  +WTGKQ+F+++I    N+  +     +E+    K   T GD  
Sbjct: 568  FDGKI--PAPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSEEE----KGFITPGDTM 621

Query: 497  IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
            +RIE              EL+SG L K +LG G    L  ++  + G  A    +     
Sbjct: 622  VRIE------------KGELLSGTLCKKSLGTGTG-SLIHIIWEEVGPDAARKFLGHTQW 668

Query: 557  LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVK------IKEYNEGKLQLK 610
            L   W+  +GFSIGI D      ++D    + + N  +C  K      IK+ +E +L+ +
Sbjct: 669  LVNYWLLQNGFSIGIGDT-----IADA-STMQTINDTICKAKDEVKELIKKAHEKQLEAE 722

Query: 611  PGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACV 670
            PG    ++ E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACV
Sbjct: 723  PGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 782

Query: 671  GQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLV 730
            GQQ+V G+R P GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+
Sbjct: 783  GQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 842

Query: 731  DTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEP 790
            DTAVKT++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + 
Sbjct: 843  DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDS 902

Query: 791  L-----NFDRLLMKVKATCPPAGQRYLSPQQVSEI-------------VEK--------- 823
            L      FD L  + +         Y+ P+ V ++             V+K         
Sbjct: 903  LKMKKPEFDNLF-RYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQLG 961

Query: 824  -QLAAYGKESCSEAFLNSLRKFFEGQQ---------------------DKLDKKIKFVED 861
             ++A  G  S     +N  R  +  Q+                     DKL +++K V  
Sbjct: 962  TEIATTGDNSWPMP-VNLKRLIWNAQKTFRIDFRRPSDMHPMEIVEAVDKLQERLKVVPG 1020

Query: 862  IGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFS------RYRVKRVEAGTAIGAIGA-- 913
               DD   I      K + +      + +++ F+       YR+ +      IG I +  
Sbjct: 1021 ---DDPMSI---EAQKNATLF---FNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRF 1071

Query: 914  -QSIGEPG---------------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRIST 957
             QS+  PG               TQMTL TFH+AGV++ N+T GVPR++EIIN AK+I T
Sbjct: 1072 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1131

Query: 958  PIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDA 1015
            P ++  L  E N  +  A+ V+  +E T L  V  + +I         +I  D E +Q  
Sbjct: 1132 PSLSVYLKPEVNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSY 1191

Query: 1016 HLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFE------------ 1063
            +   + DI  + I  +P +   + + +++  +KL +    DK    F+            
Sbjct: 1192 YEMPDEDIDPDKI--SPWLLRIELNREMMVDKKLSMADIADKINREFDDDLSCIFNDDNA 1249

Query: 1064 -----------------------------LYSLK-NVLPMVIVKGIKTVERVVIAEKEKE 1093
                                         L  ++ N+L  + ++GI  + +V I E  K 
Sbjct: 1250 DKLILRIRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEG-KV 1308

Query: 1094 KRKVKENGEK--KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICII 1151
                ++ G K   ++ L  EG  L AVM  E +D  +T SNH+ EV + LGIEA R  ++
Sbjct: 1309 NTFYQDEGFKAANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLL 1368

Query: 1152 DEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHL 1211
            DE+   +   G  ++ RH+ +L D MT+RG ++ ITR GI + D   LM  SFE+T D L
Sbjct: 1369 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDIL 1428

Query: 1212 FNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             +A+V    D + GV+E I++G   P+GTG
Sbjct: 1429 LDAAVYAESDHLRGVTENIMLGQLAPIGTG 1458


>gi|413917378|gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
          Length = 1850

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/1276 (35%), Positives = 677/1276 (53%), Gaps = 146/1276 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            IL+   VL + KR++D DC +L L+    RP+ +I+  + VPP  +RPSV+MD S  +E+
Sbjct: 210  ILSAERVLNVLKRISDEDCLLLGLNPKYARPDWMILQVLPVPPPPVRPSVMMDTSSRSED 269

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VAR 200
            D+T +L  II+ N +L+++      A       + LQ  +A Y ++D+ G P + Q   R
Sbjct: 270  DLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNDLPGQPRATQRSGR 329

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            P+     RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I E+ +P  +A  LTYPE V
Sbjct: 330  PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETV 389

Query: 261  SDHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRH 316
            + +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RH
Sbjct: 390  TPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLEL--GYKVERH 447

Query: 317  LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
            L DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ 
Sbjct: 448  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 507

Query: 377  EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
            E R E L LM V   + +P++   ++   QD L     IT++DT  ++  F  +  +  D
Sbjct: 508  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQD 567

Query: 437  GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
               ++  P P ILKP  +WTGKQ+F+++I    N+  +     +E+    K   T GD  
Sbjct: 568  FDGKI--PAPTILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSEEE----KGFITPGDTM 621

Query: 497  IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
            +RIE              EL+SG L K +LG G+   L  V+  + G  A    +     
Sbjct: 622  VRIE------------KGELLSGTLCKKSLGTGSG-SLIHVIWEEVGPDAARKFLGHTQW 668

Query: 557  LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
            L   W+  +GFSIGI D        +     IS+        IK+ +E +L+ +PG    
Sbjct: 669  LVNYWLLQNGFSIGIGDTIADASTMETINDTISKAKNAVKELIKKAHEKQLEAEPGRTMM 728

Query: 617  QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
            ++ E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V 
Sbjct: 729  ESFENRVNQVLNKARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 788

Query: 677  GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
            G+R P GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT
Sbjct: 789  GKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 848

Query: 737  ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL----- 791
            ++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L     
Sbjct: 849  SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKP 908

Query: 792  NFDRLLMKVKATCPPAGQRYLSPQQVSEI-------------VEK------QLAAYGKES 832
             FD +  + +         Y+ P+ V ++             V+K      QL +    +
Sbjct: 909  EFDNVF-RYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQLGSEITTT 967

Query: 833  CSEAF---LNSLRKFFEGQQD-KLDKK-------IKFVEDIGWDDKSQILEEVTHKTSGI 881
               ++   +N  R  +  Q+  K+D +       ++ VE I  D   + L+ V    +  
Sbjct: 968  GDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAI--DKLQERLKVVPGDDAMS 1025

Query: 882  TEKQ------LEVFIQTCFS------RYRVKRVEAGTAIGAIGA---QSIGEPG------ 920
             E Q        + +++ F+       YR+ +      IG I +   QS+  PG      
Sbjct: 1026 IEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCV 1085

Query: 921  ---------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDN 969
                     TQMTL TFH+AGV++ N+T GVPR++EIIN AK+I TP ++  L  + N  
Sbjct: 1086 AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPQVNQK 1145

Query: 970  ENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIV 1029
            +  A+ V+  +E T L  V  + +I         +I  D E +Q  +   + DI  + I 
Sbjct: 1146 KELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDTEFVQSYYEMPDEDIDPDKI- 1204

Query: 1030 QTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFE-----LYSLKNVLPMVI--------- 1075
             +P +   + + +++  +KL +    +K    F+     +++  N   +++         
Sbjct: 1205 -SPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRIRITNDEA 1263

Query: 1076 ----------------------------VKGIKTVERVVIAEKEKEKRKVKENGEK--KK 1105
                                        ++GI  + +V I E  K     +++G K   +
Sbjct: 1264 PKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEG-KVNTFYQDDGFKAANE 1322

Query: 1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
            + L  EG  L AVM  E +D  +T SNH+ EV + LGIEA R  ++DE+   +   G  +
Sbjct: 1323 WMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYV 1382

Query: 1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
            + RH+ +L D MT+RG ++ ITR GI + D   LM  SFE+T D L +A+V    D + G
Sbjct: 1383 NYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDHLRG 1442

Query: 1226 VSECIIMGIPMPLGTG 1241
            V+E I++G   P+GTG
Sbjct: 1443 VTENIMLGQLAPIGTG 1458


>gi|281203888|gb|EFA78084.1| RNA polymerase II largest subunit [Polysphondylium pallidum PN500]
          Length = 2159

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1306 (33%), Positives = 699/1306 (53%), Gaps = 160/1306 (12%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L+   V  + KR+ D D   + L+    RP+ ++IT + VPP  +RPS++MD +   E+
Sbjct: 207  VLSAERVHSILKRIRDDDARAMGLNPEWARPDWMVITVLPVPPPPVRPSIMMDTASRGED 266

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
            D+T +L  I++ N  L+++      A       + LQ  VA Y+++++ G+P + Q + R
Sbjct: 267  DLTHKLADIVKANRELRKQEKNGAPAHIITEATQFLQFHVATYVDNEIPGLPQAQQRSGR 326

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            PL    QRLKGK+GR RGNL GKRV+++ RTVI+ DPNL I +V +P  +A  LTYPE V
Sbjct: 327  PLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETV 386

Query: 261  SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
            +  NI+++R+ I+NGP+++PGA+ I   DGT   L  +F  ++    L+ G  V+RH++D
Sbjct: 387  TPFNIDRMRELIRNGPNEHPGAKYIIREDGTRFDL--RFVKKITDTHLECGYKVERHIQD 444

Query: 320  GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
            GDVV+FNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+ E R
Sbjct: 445  GDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETR 504

Query: 380  TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDG 437
             E + +M V   + +P++   ++   QD L  S   T++DTF +R      LM     DG
Sbjct: 505  AEIIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSMKFTKRDTFVERDLMMNILMWLPSWDG 564

Query: 438  MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
                 +P PAI KP +LWTGKQLFS++I P+ N++              +   T  D+E 
Sbjct: 565  ----KIPPPAIWKPKKLWTGKQLFSLII-PNINLQ--------------RFGSTHSDKEK 605

Query: 498  RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
                M   D  V     EL++G L K +LG  N   ++ V++ ++G  +    +++   +
Sbjct: 606  EKSEMAA-DTVVIIDQGELLTGILCKRSLGAANGSIIH-VVMNEHGHDSCRLFIDQTQTV 663

Query: 558  SARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
               W+ NHGF++GI D +     +S     + +   +V  + IK     + + +PG    
Sbjct: 664  VNHWLINHGFTVGIGDTIADAATMSKVTSAIANAKTQVKELIIKA-QSNQFECQPGRSML 722

Query: 617  QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
            ++ E  +  +LN  R+DAG +   SL   N+   M   GSKGS INISQM+ACVGQQ+V 
Sbjct: 723  ESFEKEVNRVLNTARDDAGTSAQRSLQESNNVKAMVNAGSKGSFINISQMMACVGQQNVE 782

Query: 677  GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
            G+R P GF +R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT
Sbjct: 783  GKRVPFGFQNRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 842

Query: 737  ADTGYMSRRLIKALEDLSIQYDNSVRNAGG--------------CIVQ------------ 770
            ++TGY+ RRL+KA+ED+S++YD +VRN+ G              C V+            
Sbjct: 843  SETGYIQRRLVKAMEDVSVKYDATVRNSLGDVIQFAYGEDGLDSCFVENQMFDSLKRDNQ 902

Query: 771  -FL-----------YGDDGMDPANME------------GKSGEPLNFDRLLMKVKATCPP 806
             F+           YGD  ++P  +E             +  + + FDR L++ +   P 
Sbjct: 903  DFIKLYKHQIDRSDYGDGWINPLIIEEIRNDSTIRETLDREFKRIEFDRNLLRTE-IIPT 961

Query: 807  AGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLR--KFFEGQQDKLDKKIKFVEDIGW 864
                +  P  +  ++      +G +  + + LN        EG    L  ++K +  I  
Sbjct: 962  GEASWPLPVNLRRMIINAHKQFGIDHRTISDLNPAHVVNSIEG----LISRLKIIAQIDA 1017

Query: 865  DDKSQILEEV---THKTSGI---------------------TEKQLEVFIQTCFSRYRVK 900
             ++  I  +    TH+ + +                      EK     +    S++ + 
Sbjct: 1018 SEEDTIYSQAWSETHQNATLLFSILLRSTLSSKRVLEEFRLNEKAFNWMVGEVESKFLLS 1077

Query: 901  RVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPII 960
             V  G  +GA+ AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEIIN AK + TP +
Sbjct: 1078 IVNPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKTVKTPSL 1137

Query: 961  TAELECNDNENA--ARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLC 1018
            T  L+ +  +++  A+ V+ ++E T +  V  + +I         ++  D E +   +L 
Sbjct: 1138 TIYLQPDAAKDSEKAKSVQCQLEYTTMATVTAATEIYYDPDPQQTLVKEDEEFVS-RYLL 1196

Query: 1019 INADIVKESIVQTP---KIKLKQQHI--KVL-----------DFRKLE-IFPPVDKSKIH 1061
            +  D  K   V +P   +I+L ++ +  K L           DF +L  IF   +  K+ 
Sbjct: 1197 LPDDDTKADDVLSPWVLRIELDREMVTDKKLSLSDITQCIKRDFGRLNCIFSDDNADKLI 1256

Query: 1062 FELYSLKN---------------------VLPMVIVKGIKTVERVVIAEKEKEKRKVKEN 1100
              + ++++                     +L  +++ GI+ +++V +  +  ++ +V EN
Sbjct: 1257 IRIRTIEDNDSKTDGNDDDDTFLRRIEAKMLSEMVLCGIRGIKKVFM--RHDDQVRVNEN 1314

Query: 1101 G---EKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINET 1157
            G    KK++ L  +G  L  VM    +D  +T SN I E+ Q LGIEA R  ++ E+   
Sbjct: 1315 GAYFSKKEWVLDTDGVNLLEVMSHPDVDHSRTVSNDIIEIIQVLGIEAVRNALLKELRAV 1374

Query: 1158 MKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVN 1217
            +   G  ++ RH+ +LAD+MT+RG ++ I+R GI +++   LM  SFE+T + L +A++ 
Sbjct: 1375 ISFDGSYVNYRHLAILADVMTYRGHLMAISRHGINRVESGPLMRCSFEETVEILMDAAMF 1434

Query: 1218 GRDDRIEGVSECIIMGIPMPLGTGILKIR-QRDAVPPMLKYGAPDP 1262
               D ++GV+E II+G   PLGTG  ++   +D +        P+P
Sbjct: 1435 SETDDVKGVTENIILGQLPPLGTGSFEVYLNQDMIKNAHSIAMPEP 1480


>gi|330795314|ref|XP_003285719.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
 gi|325084350|gb|EGC37780.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
          Length = 1755

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1308 (33%), Positives = 688/1308 (52%), Gaps = 164/1308 (12%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L+   VL + KR+ D D   + ++    + + ++ T + VPP  +RPS++MD S   E+
Sbjct: 207  VLSAERVLNILKRIKDEDSIAMGINPDWAKADWMVATVLPVPPPPVRPSIMMDTSTRGED 266

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VAR 200
            D+T +L  I++ N  LQ++      A       + LQ  VA Y+++++ G+P + Q   R
Sbjct: 267  DLTHKLADIVKANKELQRQEKNGAPAHIITEATQFLQFHVATYVDNEIPGLPQAQQRSGR 326

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            PL    QRLKGK+GR RGNL GKRV+++ RTVI+ DPNL I +V +P  +A  LTYPE V
Sbjct: 327  PLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETV 386

Query: 261  SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
            +  NI+K+R+ I+NGP+++PGA+ I   DGT   L  +F  +++   L+ G  V+RH+ D
Sbjct: 387  TPFNIDKMRELIRNGPNEHPGAKYIIREDGTRFDL--RFVKKVSDTHLECGYKVERHIND 444

Query: 320  GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
            GDVV+FNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQT E R
Sbjct: 445  GDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLETR 504

Query: 380  TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDG 437
             E + +M V   + +P++   ++   QD L  S L T++DTF +R      LM     DG
Sbjct: 505  AEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDTFIERDLVMNILMWLPSWDG 564

Query: 438  MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
                 +P PAILKP +LWTGKQLFS++I P  N+               +   T  D+E 
Sbjct: 565  ----KVPPPAILKPKQLWTGKQLFSLII-PDINLI--------------RFTSTHNDKE- 604

Query: 498  RIETMCPN-----DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
                  PN     D  V     EL++G L K +LG  N   +  V++ ++G       ++
Sbjct: 605  ------PNECSAGDTRVIIERGELLAGILCKRSLGAANG-SIIHVVMNEHGHDTCRLFID 657

Query: 553  RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISE-NYEVCNVKIKEYNEGKLQLKP 611
            +   +   W+ N GF++GI D     +  +K    IS    +V  + IK  N+ + + +P
Sbjct: 658  QTQTVVNHWLINRGFTMGIGDTIADAQTMEKVTLTISSAKNQVKELIIKAQNK-QFECQP 716

Query: 612  GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
            G    +T E  +  +LN+ R+ AG +   SL   N+   M   GSKGS INISQM+ACVG
Sbjct: 717  GKSVMETFEQKVNQVLNKARDTAGSSAQNSLSEANNLKAMVTAGSKGSFINISQMMACVG 776

Query: 672  QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
            QQ+V G+R P GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+D
Sbjct: 777  QQNVEGKRVPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 836

Query: 732  TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL 791
            TAVKT++TGY+ RRL+KA+ED+SI+YD +VRN+ G ++QF YG+DG+D   +E +S + L
Sbjct: 837  TAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFVESQSIDSL 896

Query: 792  NFD----RLLMKVKATCPPAGQRYLSP---------QQVSEIVEKQLAAYGKESC----- 833
              D      + K     P  G+ ++ P           + + +EK+      +       
Sbjct: 897  RKDNHDLERMYKHMVEKPDYGEGWMDPLVIELVRGDPLIRDTLEKEFERIKSDRTLMRNE 956

Query: 834  -------SEAFLNSLRKFFEGQQDKLDKKIKFVEDIG----------------------- 863
                   S     +LR+     Q   +  I+ V D+                        
Sbjct: 957  IIPTGENSWPLPVNLRRLITNAQKLFNIDIRRVSDLNPAFVVLEIEKVVSRLKIIATADT 1016

Query: 864  -WDDKS--QILEEVTHKTSGITEKQLEVFIQTCFSRYRVK---RVEAGTAIGAIGA---- 913
              DD+S  +   EV H  + +      + +++  +  RV    R+     +  +G     
Sbjct: 1017 TEDDESFNRAWSEVYHNATLL----FSILVRSTMASKRVLTEFRLTEKAFLWVVGEIESK 1072

Query: 914  --QSIGEPG---------------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRIS 956
              Q++  PG               TQMTL TFH+AGV+S N+T GVPR+KEIIN AK++ 
Sbjct: 1073 FLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQVK 1132

Query: 957  TPIITAELECN--DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQD 1014
            TP +T  L+ +   + + A+ VK  +E T L  V  + +I       + +I+ D E +  
Sbjct: 1133 TPSLTIYLKPHIARDMDCAKTVKSHLEYTTLANVTSATEIYYDPDPENTIISEDAEFVNS 1192

Query: 1015 A-HLCINADI-------------VKESIVQTPKIKLKQ-QHIKVLDF-RKLE-IFPPVDK 1057
                 +N D+             +   +V   K+ + +     V DF   L  IF   + 
Sbjct: 1193 YFEFGMNEDVGVERMSPWLLRIELDRGMVTAKKLTMAEITQCVVRDFGLNLNCIFSDDNA 1252

Query: 1058 SKIHFELYSLK--------------------NVLPMVIVKGIKTVERVVIAEKEKEKRKV 1097
             K+   +  ++                    N+L  ++++GIK +++V +   +K  + +
Sbjct: 1253 DKLILRIRMVESEDMKTENDDDDQFLRRIESNMLSGMVLRGIKGIKKVFMRTDDKIPKIL 1312

Query: 1098 KEN--GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEIN 1155
             +   G ++++ L  +G  L  VM    +D  +T SN I E+ Q LGIEA R  ++ E+ 
Sbjct: 1313 DDGSYGNREEWILDTDGVSLLEVMSHPDVDHSRTTSNDIVEIIQVLGIEAVRNALLKELR 1372

Query: 1156 ETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAS 1215
              +   G  ++ RH+ +LAD+MT+RG ++ ITR GI +++   LM  SFE+T + L +A+
Sbjct: 1373 AVISFDGSYVNYRHLAVLADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEILMDAA 1432

Query: 1216 VNGRDDRIEGVSECIIMGIPMPLGTGILKIR-QRDAVPPMLKYGAPDP 1262
            +    D ++GV+E II+G   PLGTG  ++   +D V        P+P
Sbjct: 1433 MFSETDDVKGVTENIILGQLPPLGTGSFEVYLNQDMVKNAHSIALPEP 1480


>gi|310789907|gb|EFQ25440.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
          Length = 1753

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1275 (33%), Positives = 666/1275 (52%), Gaps = 150/1275 (11%)

Query: 94   LFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQS---NENDITERL 147
            + +R++D D   + L+    RPE +I+T + VPP  +RPS+ MDG+     NE+D+T +L
Sbjct: 220  ILRRISDDDLRDMGLNLEYARPEWMIVTVLPVPPPPVRPSISMDGTGQGLRNEDDLTYKL 279

Query: 148  KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
              II+ N++++Q + E + A  +    + LQ  VA Y+++D+ G P ++Q + RP+    
Sbjct: 280  GDIIRANSNVKQAIREGSPAHIAQDFEQLLQYHVATYMDNDIAGQPRALQKSGRPVKAIR 339

Query: 207  QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
             RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LTYPE V+ +NI 
Sbjct: 340  ARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNIG 399

Query: 267  KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
            +L + +QNGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL  GD ++FN
Sbjct: 400  RLHELVQNGPNEHPGAKYVIRTDGT-RIDLRHHRRAGQISLEYGWKVERHLITGDYIIFN 458

Query: 327  RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
            RQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R E   L 
Sbjct: 459  RQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELC 518

Query: 387  GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
             V  N+ +P+    L+   QD L  ++ + R+D F  +     +  ++   DG+    +P
Sbjct: 519  LVPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLSKEQVMNIMLWVPNWDGI----IP 574

Query: 445  TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
             PAI++P   WTGKQ+ S+ +    N+   V+L     +  +  ++ EG           
Sbjct: 575  PPAIVRPRPRWTGKQIMSLAV---PNI---VSLHSAPDSKEDNPLKDEG----------- 617

Query: 505  NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
                +  ++ +++ G L K  +G  +  G+  ++  ++G  A    +N + ++   W+ +
Sbjct: 618  ----LLIQSGQIMYGLLSKKNIGAASG-GIVHIVYNEHGPEAAMKFLNGVQQVVNYWLLH 672

Query: 565  HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
            +GFSIGI D  P K   +K    I E+        ++    +L+  PG +  +T E+ ++
Sbjct: 673  NGFSIGIGDTIPDKVTIEKVQVHIDEHKAEVEEYTRQATANELEPLPGMNIRETFESKVS 732

Query: 625  DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
              LN  R+ AG     SL   N+ + M+  GSKGS INISQM A VGQQ V G+R P GF
Sbjct: 733  KALNTARDKAGTTTQKSLKDLNNAVTMASSGSKGSSINISQMTALVGQQIVEGKRIPFGF 792

Query: 685  IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
              R+LPHF +    P A+GFV NS+  GL+ +EFFFH M GREGL+DTAVKTA+TGY+ R
Sbjct: 793  KYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQR 852

Query: 745  RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF------DRLLM 798
            RL+KALED+S +YD +VRN+ G I+QFLYG+DG+D   +E +  + LN       DR  +
Sbjct: 853  RLVKALEDVSAKYDGTVRNSLGDILQFLYGEDGLDAIYIEKQRMDHLNMSDKKFIDRFRL 912

Query: 799  KVKATCPPA-------GQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDK 851
             V     P        G        V ++++++  A   +      +N  RK  E  Q  
Sbjct: 913  DVMDENRPEELEWLEYGNEIAGDPSVQQLLDEEFDALLADRKQVRQINFKRKDDETMQLP 972

Query: 852  LD--------KKIKFVEDIGWDD------------------------------------- 866
            L+        KK+  VED    D                                     
Sbjct: 973  LNIVRLMETSKKLFAVEDFQRSDLRPQDVIPAVQAMLKRMTIVRGNDEISKEADYSATIL 1032

Query: 867  -KSQILEEVTHKTSGITEK----QLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGT 921
             K+QI   +  K     ++      E  +    +R+    V  G  +G I AQSIGEP T
Sbjct: 1033 FKAQIRSRLAFKRIACHQRLNKMAFEHVLGELEARWDRAFVSPGEMVGVIAAQSIGEPAT 1092

Query: 922  QMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDN--ENAARVVKGR 979
            QMTL TFHFAGV+S N+T GVPR+KEI+N A+ I TP +   L   DN  + AA+ ++  
Sbjct: 1093 QMTLNTFHFAGVSSKNVTLGVPRLKEILNLAQNIKTPSMVVYLSGEDNASQEAAKALRST 1152

Query: 980  IEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQ 1039
            +E T L  V    +I     + S  I  D++ ++  +L  +    K        ++L   
Sbjct: 1153 VEHTTLRSVTAVTEIYYDPEITSTNIPDDLDMVESYYLIPDESHDKTEDQSRWLLRLTLD 1212

Query: 1040 HIKVLD--------FRKLEIFPPVDKSKIHFELYSLKNVL---PM--------------- 1073
              K+LD         R+++   P D + I  +  + + ++   PM               
Sbjct: 1213 RQKLLDKELTVEDVARRIKEEYPNDLAVIFSDNNAEEQIIRIRPMHAGNDNKDEDGEKKI 1272

Query: 1074 ----------------VIVKGIKTVERVVIAEKEK-------EKRKVKENGEKKKYRLLV 1110
                            + ++G+K +ER  + ++ K            K +    ++ L  
Sbjct: 1273 EDDVMLKRLETHLLDTLSLRGVKGIERAFLNKETKLIETEDGALLAAKADERCSEWYLDT 1332

Query: 1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
             GT L+ V+  +G+D  +T +NH+++V +  GIEAAR  ++ E+ + +   G  ++ RH+
Sbjct: 1333 SGTALRQVLAVDGVDSNRTYTNHLWQVVEVFGIEAARAALVRELTQVLAFDGSYVNHRHL 1392

Query: 1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
             LL D+MT+RG +  +TR GI + D   LM  SFE+T + L  A+  G  D   G+SE +
Sbjct: 1393 ALLCDVMTYRGTISAVTRHGINRADTGALMRCSFEETVEILLEAAAVGELDDCRGISENV 1452

Query: 1231 IMGIPMPLGTGILKI 1245
            ++G   P+GTG   +
Sbjct: 1453 MLGQMAPMGTGHFDV 1467


>gi|385302705|gb|EIF46824.1| rna polymerase ii largest subunit, partial [Dekkera bruxellensis
            AWRI1499]
          Length = 1699

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/1331 (33%), Positives = 692/1331 (51%), Gaps = 186/1331 (13%)

Query: 35   CGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFL 94
            CG I   ++K    L     R+ V +  ++      H +E                VL +
Sbjct: 177  CGSIQPTIRKDGLKLWGTWRRASVDDDTEQIERRQVHAEE----------------VLGV 220

Query: 95   FKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRII 151
            F+ ++  DCE L  S    RPE +I+T + VPP  +RPSV    S+ +E+D+T +L  I+
Sbjct: 221  FRHISAADCEKLGFSNEWARPEWMILTVLPVPPPPVRPSVAFTDSKRSEDDLTYKLADIL 280

Query: 152  QTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGF 205
            + N ++Q+  ++ +     + F++L     LQ  VA Y+++D+ G P ++Q + RP+   
Sbjct: 281  KANINVQKFQMDGSPQHVINEFEAL-----LQYHVATYMDNDIAGQPQALQKSGRPIKSI 335

Query: 206  VQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNI 265
              RL+GK+GR RGNL GKRV+++ R+VIS DPN+++ +V +P  +A+ LTYPE V+ +NI
Sbjct: 336  RARLRGKEGRLRGNLMGKRVDFSARSVISGDPNIELDQVGVPRTVAQTLTYPEVVTPYNI 395

Query: 266  EKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLF 325
             +L Q ++NGP++YPGAR +   D   R+     +    ++L+ G  V+RHL DGD VLF
Sbjct: 396  GQLTQLVRNGPNQYPGARYV-IRDSGERIDLRFNKRAGDIQLQYGWKVERHLMDGDPVLF 454

Query: 326  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
            NRQPSLH+MS+MCH+ R+MP+ T R N SV  PYNADFDGDEMNMHVPQ+ E + E   +
Sbjct: 455  NRQPSLHKMSMMCHKXRVMPFSTFRINLSVTTPYNADFDGDEMNMHVPQSYETKAELEEI 514

Query: 386  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYMGDGMDRVDL 443
              V   + +P++ + ++   QD L     +T +D+F  YD+    +  C+   G D V +
Sbjct: 515  CAVPRQIVSPQSNKPVMGIVQDTLVGVRKMTLRDSFVAYDQL---MNMCFWNPGWDGV-V 570

Query: 444  PTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMC 503
            P PA+LKP  LWTGKQ+FS              LT+    +   L R +G        + 
Sbjct: 571  PQPAVLKPRPLWTGKQVFS--------------LTIPRGIF---LQRVDG------PPLS 607

Query: 504  PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIG 563
            P D  +  RN +++ G + KAT+G  +  GL    +R+ G    +  +  + K+   W+ 
Sbjct: 608  PRDSGMLIRNGDVMFGVVNKATVGTSSG-GLIHTCMREKGPRECARMIGSIQKVCNYWLL 666

Query: 564  NHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
            ++GFSIGI D     +      K I+   +     I +    +LQ +PG    ++ E  +
Sbjct: 667  HNGFSIGIGDAIADPDTMKTITKTIATAKDQVQGVIXDAQANRLQPEPGMTVRESFEQKV 726

Query: 624  TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
            + ILN  R+ AGK+   SL   N+   M   GSKGS INISQM ACVGQQ V GRR   G
Sbjct: 727  SKILNEARDAAGKSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGRRIYFG 786

Query: 684  FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
            F DRSLPHF +      +KGFV NS+  GL+  E FFH M GREGL+DTAVKTA+TGY+ 
Sbjct: 787  FADRSLPHFTKDDYSAESKGFVENSYLRGLTPQELFFHAMAGREGLIDTAVKTAETGYIQ 846

Query: 744  RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKAT 803
            RRL+KALED+ +QYD + RN+ G ++QFLYG+DG+D   +E ++         +  +  +
Sbjct: 847  RRLVKALEDIMVQYDGTTRNSLGDVIQFLYGEDGLDATQVEKQT---------IDTIGGS 897

Query: 804  CPPAGQRYLSPQQVSEIVEK-QLAAYGKESCSEAFLNSLRKFFEGQQD------KLDKKI 856
                 +RYL   +V + V++ + A Y +     AFL  +   F    D       + + +
Sbjct: 898  TAAFERRYLDSTEVDDAVQRARDAEYSQLXADRAFLRKV--VFPTGDDAWPLPVNIRRIV 955

Query: 857  KFVEDIGWDDKSQ----ILEEVTHKTSGITEKQLEV----------------FIQTCFSR 896
            +  + I   D+++     + EV  + + +   +L V                ++  C  R
Sbjct: 956  QNAQQIFHVDRARSSDLTVPEVVRRVAVLCHDKLPVVRGSGGCLDQAQQNATYLFQCLVR 1015

Query: 897  -----------YRVKR------------------VEAGTAIGAIGAQSIGEPGTQMTLKT 927
                       +R+ R                  V  G  +G I AQSIGEP TQMTL T
Sbjct: 1016 SRLASKRVLHEFRLNRDAFDWVLGMVEQQFAKSLVNPGEMVGVIAAQSIGEPATQMTLNT 1075

Query: 928  FHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECN---DNENAARVVKGRIEKTL 984
            FH+AGV+S N+T GVPR+KEI+N AK I TP +T  L+ +   D E  A+ ++  IE T 
Sbjct: 1076 FHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDEHVAFDIER-AKSIQSAIEHTT 1134

Query: 985  LGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESI-VQTPK-IKLKQQHIK 1042
            L  V    +I       S VI  D++T++ A+  I    V+E++  Q+P  ++L+    K
Sbjct: 1135 LKNVTAVTEIYYDPDPKSTVIDADIDTVE-AYFAIPDXKVEENLHRQSPWLLRLQLDRAK 1193

Query: 1043 VLDFRKLEIFPPVDK-----SKIHFELYSLKNVLPMVI---------------------- 1075
            +LD ++L +     +         F ++S  N   +VI                      
Sbjct: 1194 MLD-KQLTMSQVAGRITDSFGDDLFVIWSEDNAENLVIRCRIMREDKPXDADAADADAED 1252

Query: 1076 ------------------VKGIKTVERVVIAEKEKEKRKVKENGE---KKKYRLLVEGTG 1114
                              + GI  + RV + + +K    +  +G+   KK++ L  +G  
Sbjct: 1253 TEDGLLKALESQMLESITLGGIXGISRVFMMKYDKT--YIDSSGDFAKKKEWVLETDGIN 1310

Query: 1115 LQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLA 1174
            L  V+  +G+D  +T SN   E+   LGIEAAR  +  EI   +   G  ++ RH+ LL 
Sbjct: 1311 LSDVIAVDGVDPTRTYSNSFVEILSVLGIEAARRALYKEILNVIAFDGSYVNYRHLALLV 1370

Query: 1175 DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGI 1234
            DLMT++G ++ I+R G  + +   LM  +FE+T + LF A  +   D  +GVS+ +I+G 
Sbjct: 1371 DLMTYKGHLIAISRHGFNRNETGALMRCTFEETVEILFEAGASAELDTCDGVSQNVILGQ 1430

Query: 1235 PMPLGTGILKI 1245
              P+GTG  ++
Sbjct: 1431 MAPVGTGSFQL 1441


>gi|348676924|gb|EGZ16741.1| RNA polymerase II large subunit [Phytophthora sojae]
          Length = 1852

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1300 (34%), Positives = 668/1300 (51%), Gaps = 169/1300 (13%)

Query: 86   LNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
            L    VL +FK ++D DC  L L  R   P+ L++T + VPP  +RPSV +DG    E+D
Sbjct: 239  LPAAKVLSIFKNISDEDCFALGLDPRWARPDWLVMTLMPVPPPHVRPSVAIDGMARGEDD 298

Query: 143  ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARP 201
            +T  L  I++ N +L   + +   +       + LQ  +A ++N++  G+P + Q   +P
Sbjct: 299  LTHNLASIVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFLNNEQPGLPQAQQRSGKP 358

Query: 202  LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
            L    QRL+GK+GR RGNL GKRV+++ RTVI+ DPN+ I +V +P  +A  LT PERV+
Sbjct: 359  LKTLRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNIAIDQVGVPRSIAMNLTVPERVT 418

Query: 262  DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
              N+  + Q I NGP ++PGA+ I   DG  R+     +N+  + LK G IV+RHL D D
Sbjct: 419  PFNMNYMHQLIANGPLEHPGAKYIIREDGN-RIDLRYIKNKSDLALKCGWIVERHLRDDD 477

Query: 322  VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
            +VLFNRQPSLH+MSIM HR ++  W T R N SV +PYNADFDGDEMN+HVPQ+  AR +
Sbjct: 478  LVLFNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQSMTARAD 537

Query: 382  ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DRAAFSLMCCYMGDGMD 439
            A  LM V   + TP++   ++   QD L  +   T++D F   D     LM     DG  
Sbjct: 538  AQELMMVHKVIITPQSNRPVMGIVQDSLLGAQKFTKRDIFLTKDWVMNLLMWVSNWDG-- 595

Query: 440  RVDLPTPAILKP--------VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRT 491
               +PTPAIL P          +WTGKQLFS ++         +N T    T+++K    
Sbjct: 596  --KVPTPAILVPKKGELGKYTPIWTGKQLFSTIVP-------GINFTGFSSTHNSKE--- 643

Query: 492  EGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCM 551
                  +   + P D  V  +  EL++G + K  +G+ +  GL  + + + G   T   +
Sbjct: 644  ------KFSDLSPIDSRVIIQQGELLAGIIDKKIIGS-SAGGLIHITMLEKGPDETKRLL 696

Query: 552  NRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
              + +L   W+    F++G+ D             +I++     +  +    +GKL+ +P
Sbjct: 697  GAIQQLVNNWLVGRSFTVGVSDTIADVSTLKTIVDIITQAKVQVHDLVVRGQKGKLETQP 756

Query: 612  GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
            G    ++ E ++  +LN  R+ AG+   GSL   N+       GSKGS INISQ++ACVG
Sbjct: 757  GRTMVESFEGLVNIVLNTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVG 816

Query: 672  QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
            QQ+V G+R P GF  R+LPH+ +    P ++GFV NS+  GL+  EFFFH MGGREGL+D
Sbjct: 817  QQNVEGKRIPYGFNHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLID 876

Query: 732  TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL 791
            TAVKTA+TGY+ RRL+KA+E +  +YD +VRNA G I+QFLYG+DGMD   +E +  E  
Sbjct: 877  TAVKTAETGYIQRRLVKAMESVMTRYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESH 936

Query: 792  NFDRLLMKVKATCPPA-----------GQRYLSP---------QQVSEIVEKQLA----- 826
              +++  + K    P+            Q YL P         Q+  +++ ++LA     
Sbjct: 937  KLNKVQFEKKYVFDPSDEELGCVPNCPDQLYLEPDIIKDIRTNQRTQQLLREELAQLQKD 996

Query: 827  -----------AYGKESCSEAFLN-SLRKFFEGQQD----------------------KL 852
                         G+ES + A +  ++R+  E  Q                       +L
Sbjct: 997  RVNLRVILASRGQGQESDNAAQIPVNIRRLVENAQQLFSIDMRKPSSLHPSRIIEGVKEL 1056

Query: 853  DKKIKFVEDIGWDDK------------SQILEEVTHKTSGI------TEKQLEVFIQTCF 894
             KKI  V+    DD+             QIL   T  +  +      TE   E  +    
Sbjct: 1057 CKKIIVVQG---DDRLSIEAQENATLFFQILLRSTLASKCVTLEHRLTETAFEWLMGEIE 1113

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++    V AG   G +GAQSIGEP TQMTL TFH+AGV++ N+T GVPR+KEI+N AK 
Sbjct: 1114 SKFTSALVSAGEMAGVVGAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKD 1173

Query: 955  ISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            + TP +   L  +C  + + A+ ++ ++E T L  V  +  I       + V+  D E +
Sbjct: 1174 VRTPSLRIFLTPDCAHDADKAKFIQSQLEYTTLADVTANTSIYYDPDPMNTVVEEDQEFV 1233

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKL---EIFPPV-------------- 1055
               +   + D     I ++P +   + + K++  +KL   EI   V              
Sbjct: 1234 ASYYEMPDEDT---PIARSPWLLRIELNPKMMADKKLTMGEIAAQVESEYGQDLSCIFTD 1290

Query: 1056 ---DKSKIHFELYS---------------------LKNV----LPMVIVKGIKTVERVVI 1087
               D+  +   + S                     LK V    L  + ++GI+ V++V I
Sbjct: 1291 DNADRLVLRIRIMSDEEEKLQRSGETAVGQEDDTFLKRVEHNMLTQMKLRGIEGVKKVYI 1350

Query: 1088 AEKEKEKRKVKENGEK--KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
             E         + G K   ++ L  +GT L  VM    +D  +T SN I E+ Q LGIEA
Sbjct: 1351 REG-PSTHWFDDVGFKMMNEWMLDTDGTNLLDVMCYPQVDATRTISNDIVEIIQVLGIEA 1409

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
             R  +++EI + +   G  ++ RH+  L D+MTFRG ++ ITR GI + D   L+  SFE
Sbjct: 1410 VRRALLNEIRQVISFDGAYVNYRHLACLCDVMTFRGHLMAITRHGINRDDSGPLVRCSFE 1469

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            +T + L +A++    D + GVSE +++G   PLGTGI+ +
Sbjct: 1470 ETVEILMDAAMFSEGDPLTGVSENVMLGQLAPLGTGIMDL 1509


>gi|54291834|gb|AAV32202.1| putative RNA polymerase II [Oryza sativa Japonica Group]
          Length = 1741

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1220 (35%), Positives = 634/1220 (51%), Gaps = 149/1220 (12%)

Query: 141  NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VA 199
            +D+T +L  II+ N +L+++      A       + LQ  +A Y ++++ G P + Q   
Sbjct: 218  DDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNELPGQPRATQRSG 277

Query: 200  RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
            RP+     RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I E+ +P  +A  LTYPE 
Sbjct: 278  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPET 337

Query: 260  VSDHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDR 315
            V+ +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+R
Sbjct: 338  VTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLEL--GYKVER 395

Query: 316  HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
            HL DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+
Sbjct: 396  HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 455

Query: 376  EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
             E R E L LM V   + +P++   ++   QD L     IT++DT  ++  F  +  +  
Sbjct: 456  FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWE 515

Query: 436  DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG-D 494
            D   +V  P PAILKP  +WTGKQ+F+++I    N                 LIR  G  
Sbjct: 516  DFDGKV--PAPAILKPRPIWTGKQVFNLIIPKQIN-----------------LIRFSGWH 556

Query: 495  EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
             E     + P D  V     EL+SG L K TLG  +   L  V+  + G  A    +   
Sbjct: 557  SEAETRFITPGDTMVRIEKGELLSGTLCKKTLGT-STGSLIHVIWEEVGPDAARKFLGHT 615

Query: 555  AKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
              L   W+  +GFSIGI D        +   + IS+        IK++ + +L+ + G  
Sbjct: 616  QWLVNYWLLQNGFSIGIGDTIADAATMENINETISKAKNDVKKLIKQFRDNQLEAEAGRT 675

Query: 615  AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
              ++ E  + ++LN+ R+ AG +   SL   N+   M+  GSKG+ INISQM ACVGQQ+
Sbjct: 676  TMESFENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQMTACVGQQN 735

Query: 675  VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
            V G+R P GF +R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAV
Sbjct: 736  VEGKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 795

Query: 735  KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL--- 791
            KT++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L   
Sbjct: 796  KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMK 855

Query: 792  --NFDRLLMKVKATCPPAGQRYLSPQQ------VSEI-------VEK----------QLA 826
               FD +  + +         YLS Q       +SEI       V+K          ++A
Sbjct: 856  KAEFDNVF-RYELDDENWKPNYLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIA 914

Query: 827  AYGKESCSEAFLNSLRKFFEGQQ---------------------DKLDKKIKFVEDIGWD 865
              G  +     +N  R  +  Q+                     DKL +++K V   G D
Sbjct: 915  TTGDNTWPMP-VNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVP--GDD 971

Query: 866  D-----------------KSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAI 908
            D                 +S    +   K   +T++  E  I    SR+    V  G  I
Sbjct: 972  DISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMI 1031

Query: 909  GAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--EC 966
            G + AQSIGEP TQMTL TFH+AGV++ N+T GVPR++EIIN AK I TP ++  L  E 
Sbjct: 1032 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLKPEV 1091

Query: 967  NDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKE 1026
            N  +  A+ V+  +E T L  V  + +I         +I  D E +Q  +   + DI  +
Sbjct: 1092 NKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDEDIDPD 1151

Query: 1027 SIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFE-----LYSLKNVLPMVI------ 1075
             I  +P +   + + +++  +KL +    +K    F+     +++  N   +++      
Sbjct: 1152 KI--SPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRITN 1209

Query: 1076 -------------------------------VKGIKTVERVVIAEKEKEKRKVKENG--- 1101
                                           ++GI  + +V I  KE    K ++N    
Sbjct: 1210 DEAQKGEIQDEYGEDDVFLKKIESNMLTEMALRGIPGINKVFI--KEGNVNKFEDNDGFK 1267

Query: 1102 EKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAH 1161
             +K + L  EG  L AVM  E +D  +T SNH+ EV + LGIEA R  ++DE+   +   
Sbjct: 1268 TEKGWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1327

Query: 1162 GMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD 1221
            G  ++ RH+ +L D MT+RG ++ ITR GI + D   LM  SFE+T D L +A+V    D
Sbjct: 1328 GSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1387

Query: 1222 RIEGVSECIIMGIPMPLGTG 1241
             + GVSE I++G   P+GTG
Sbjct: 1388 PLRGVSENIMLGQLAPIGTG 1407


>gi|164657340|ref|XP_001729796.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
 gi|159103690|gb|EDP42582.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
          Length = 1607

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1266 (35%), Positives = 673/1266 (53%), Gaps = 146/1266 (11%)

Query: 94   LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
            + K+++  D   L LS+   +P+ +++T + VPP  +RP V   GS   ++D+T +L  I
Sbjct: 17   ILKKISADDVNTLGLSDDFAQPDWMVLTVLPVPPPQVRPGVTEFGSGMGQDDLTYKLADI 76

Query: 151  IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRL 209
            I+ +++L++   E   A       + LQ   A Y+++D+ G+P S+Q + RP+     RL
Sbjct: 77   IKASSNLRRMEQEGAPAHILNDFADLLQYHTATYMDNDIAGLPQSLQSSGRPVKAIRARL 136

Query: 210  KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
            KGK+GR RGNL GKRV+++ RTVI+ DPNL++ +V +P  +AR LTYPERV+ +N   L 
Sbjct: 137  KGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPKSIARNLTYPERVTPYNRAYLS 196

Query: 270  QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQP 329
              ++NGP++YPGAR +    G    L  K+  +  + L++G IV+RHL DGD VLFNRQP
Sbjct: 197  DLVRNGPNEYPGARYVIRDTGERIDL--KYNRRGDIALQAGWIVERHLRDGDYVLFNRQP 254

Query: 330  SLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQ 389
            SLH+MS+M HR ++M + T R N SV  PYNADFDGDEMN+HVPQ+EEAR E   +  V 
Sbjct: 255  SLHKMSMMAHRVKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEEARAELAQIAWVP 314

Query: 390  NNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYMGDGMDRVDLPTPA 447
              + +P+  + ++   QD L      T +D    YD+    LM     DG+    +P P 
Sbjct: 315  RQIVSPQANKPVMGIVQDTLCGVRKFTLRDCLMDYDQVQNILMWLPGWDGI----VPQPC 370

Query: 448  ILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDG 507
            ILKP   W+GKQL S+ I    N+          K  SN  ++ +G              
Sbjct: 371  ILKPKPYWSGKQLLSLCIPKGINV-----FLGDAKAASNNFVKDDG-------------- 411

Query: 508  FVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGF 567
             V+  N E++ G + K  +G+    GL  ++ R+ G        + + ++   W+ ++GF
Sbjct: 412  -VHIENGEIMYGVINKKVVGS-TAGGLIHIIFRERGPVVCRDFFSGVQRVVNYWLLHNGF 469

Query: 568  SIGIDDVQPKKELSDKKGKLISE-NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDI 626
            SIGI D  P K  +    + I++   +V N+ I+      L+  PG    ++ EA +  I
Sbjct: 470  SIGIGDTVPDKATTVNINETIAKAKSDVMNL-IQAARHDWLKADPGMTLRESFEANVNRI 528

Query: 627  LNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFID 686
            LN+ R+D G     +LP  N+   M   GSKGS INISQM ACVGQQSV G+R P GF  
Sbjct: 529  LNKARDDVGSHAEQNLPDWNNVKQMVIAGSKGSFINISQMSACVGQQSVEGKRIPFGFRH 588

Query: 687  RSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRL 746
            RSLPHF +    P ++GFV NS+  GL+A EFFFH M GREGL+DTAVKTA+TGY+ RRL
Sbjct: 589  RSLPHFTKDDYTPESRGFVENSYLRGLTAHEFFFHAMAGREGLIDTAVKTAETGYIQRRL 648

Query: 747  IKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS--GEPLNFDRLLMKVKATC 804
            +KALED++I YD +VRN+   +++F YG+DG+D A +E +      LN      + K   
Sbjct: 649  VKALEDVTICYDGTVRNSTNNVIEFAYGEDGIDGAMVERQKLITHGLNDKEFRRRFKVEL 708

Query: 805  PPAGQRY---------LSP--QQVSEIVEKQLAAYGKESCSEAF----------LNSLRK 843
               G +           SP  +Q+ E   +QL A  K   +E F          LN  R 
Sbjct: 709  SRGGFKKGTLRAGLGDWSPELEQLLEGEFEQLEADRKTLRTEVFQTDRVDTYLPLNIARL 768

Query: 844  FFEGQQ------------------DKLDKKIKFVEDIGWDDK-SQILEEVT------HKT 878
                QQ                  D L + +  +  +  DDK S++++E        H  
Sbjct: 769  VLNAQQIFHIDPRKPSDLSPFEIVDGLKRVLNNLLVVRGDDKISRVMQENATLLFKIHLR 828

Query: 879  SGITEKQ-LEVF-------------IQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMT 924
            S +  KQ +EV              I+  F+R      + G   G + AQSIGEP TQMT
Sbjct: 829  SFLCSKQVIEVHHLTREAWEWVLGEIEGQFAR---SVAQPGEMCGTLAAQSIGEPATQMT 885

Query: 925  LKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEK 982
            L TFH+AGV+S N+T GVPR+KEIIN A+ I TP +T  L  + + +  +A++++  +  
Sbjct: 886  LNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVYLHPKYSASSESAKIIQTALAY 945

Query: 983  TLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIV-QTPK-IKLKQQH 1040
            T L  V  ++++      +S VI  D + + DA   I  + V+ S+  Q+P  ++L    
Sbjct: 946  TTLQTVTSAVEVFYDPDPSSTVIPEDRDFV-DAFFAIPDEEVEASLERQSPWLLRLVLDR 1004

Query: 1041 IKVLD--FRKLEIFPPV------DKSKIHFE----------------------------L 1064
             ++LD      E+   +      D   +H E                            L
Sbjct: 1005 AQMLDKNLTMAEVASKIGAMFGRDIFVMHSEDNAEELVLRIRIVDNDPDKEVQGEEDVFL 1064

Query: 1065 YSL-KNVLPMVIVKGIKTVERVVIAEKEKEKRKV-KENGEK---KKYRLLVEGTGLQAVM 1119
             SL + +L  + +KG+  + +V I +++K  R+   E GE    K+Y L  +GT L+ V+
Sbjct: 1065 KSLAQQMLTDIALKGVPGISKVFIVKQDKITRRFDPETGEWDSLKEYVLETDGTNLKDVL 1124

Query: 1120 GAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTF 1179
              +G+D  +T SN+  EV +  GIEAAR  ++ EI   ++  G  ++ RH+ LL D+MT 
Sbjct: 1125 AVDGVDVSRTLSNNCVEVFRVFGIEAARGSLLKEIRNVIEFDGSYVNYRHLALLVDIMTS 1184

Query: 1180 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLG 1239
            +G ++ ITR GI + ++  LM  +FE+T + L  A+  G  D  +GV + +++G   P+G
Sbjct: 1185 QGTLMAITRHGINRTNQGALMRCTFEETVEILMEAASMGDMDDCKGVGQNVLLGQMAPMG 1244

Query: 1240 TGILKI 1245
            TG   +
Sbjct: 1245 TGSFDL 1250


>gi|301090036|ref|XP_002895253.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
            infestans T30-4]
 gi|262101000|gb|EEY59052.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
            infestans T30-4]
          Length = 1858

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1300 (33%), Positives = 666/1300 (51%), Gaps = 169/1300 (13%)

Query: 86   LNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
            L    VL +FK ++D DC  L L  R   P+ L++T + VPP  +RPSV +DG    E+D
Sbjct: 239  LPAAKVLSIFKNISDEDCFALGLDPRWARPDWLVMTLMPVPPPHVRPSVAIDGMARGEDD 298

Query: 143  ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARP 201
            +T  L  I++ N +L   + +   +       + LQ  +A ++N++  G+P + Q   +P
Sbjct: 299  LTHNLASIVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFLNNEQPGLPQAQQRSGKP 358

Query: 202  LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
            L    QRL+GK+GR RGNL GKRV+++ RTVI+ DPNL I +V +P  +A  LT PERV+
Sbjct: 359  LKTLRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLAIDQVGVPRSIAMNLTVPERVT 418

Query: 262  DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
              N+  + Q I NGP ++PGA+ I   DG  R+     +N+  + LK G IV+RHL D D
Sbjct: 419  PFNMNYMHQLIANGPLEHPGAKYIIREDGN-RIDLRYIKNKSDLALKCGWIVERHLRDDD 477

Query: 322  VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
            +VLFNRQPSLH+MSIM HR ++  W T R N SV +PYNADFDGDEMN+HVPQ+  AR +
Sbjct: 478  LVLFNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQSMTARAD 537

Query: 382  ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DRAAFSLMCCYMGDGMD 439
            A  LM V   + TP++   ++   QD L  +   T++D F   D     LM     DG  
Sbjct: 538  AQELMMVHKVIITPQSNRPVMGIVQDSLLGAQKFTKRDIFLHKDWVMNLLMWVSNWDG-- 595

Query: 440  RVDLPTPAILKP--------VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRT 491
               +PTPAIL P          +WTGKQ+FS ++ P  N   + +     + +S+     
Sbjct: 596  --KVPTPAILVPKKGELGKYTPIWTGKQIFSAIV-PAINFTGFSSTHKSSEKFSD----- 647

Query: 492  EGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCM 551
                      + P D  V  +  EL++G + K  +G+ +  GL  + + + G   T   +
Sbjct: 648  ----------LSPIDSRVIIQQGELLAGIIDKKIIGS-SAGGLVHITMLEKGPDETKRLL 696

Query: 552  NRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
              + +L   W+    F++G+ D             +I++     +  +    +GKL+ +P
Sbjct: 697  GAIQQLVNNWLVGRSFTVGVSDTIADVSTLKTIVDIITQAKVQVHDLVVRGQKGKLETQP 756

Query: 612  GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
            G    ++ E ++  +LN  R+ AG+   GSL   N+       GSKGS INISQ++ACVG
Sbjct: 757  GRTMVESFEGLVNIVLNTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVG 816

Query: 672  QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
            QQ+V G+R P GF  R+LPH+ +    P ++GFV NS+  GL+  EFFFH MGGREGL+D
Sbjct: 817  QQNVEGKRIPYGFNHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLID 876

Query: 732  TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL 791
            TAVKTA+TGY+ RRL+KA+E +  +YD +VRNA G I+QFLYG+DGMD   +E +  E  
Sbjct: 877  TAVKTAETGYIQRRLVKAMESVMTRYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESH 936

Query: 792  NFDRLLMKVKATCPPA-----------GQRYLSP---------QQVSEIVEKQLA----- 826
              +++  + K    P+            Q YL P         Q+  +++ ++L      
Sbjct: 937  KLNKVQFEKKYVFDPSDEDLGCVPNCPDQLYLEPDIIKDIRTNQRTQQLLREELTQLQKD 996

Query: 827  -----------AYGKESCSEAFLN-SLRKFFEGQQD----------------------KL 852
                         G+ES + A +  ++R+  E  Q                       +L
Sbjct: 997  RVNLRVILASRGQGQESDNAAQIPVNIRRLVENAQQLFSIDMRKPSSLHPSRIIEGVKEL 1056

Query: 853  DKKIKFVEDIGWDDK------------SQILEEVTHKTSGIT------EKQLEVFIQTCF 894
             KKI  V+    DD+             QIL   T  +  +T      E   E  +    
Sbjct: 1057 CKKIIVVQG---DDRLSIEAQENATLFFQILLRSTLASKCVTLEHRLTETAFEWLMGEIE 1113

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++    V AG   G +GAQSIGEP TQMTL TFH+AGV++ N+T GVPR+KEI+N AK 
Sbjct: 1114 SKFTSALVSAGEMAGVVGAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKD 1173

Query: 955  ISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            + TP +   L  +C  + + A+ ++ ++E T L  V  +  I       + V+  D E +
Sbjct: 1174 VRTPSLRIFLTPDCAHDADKAKFIQSQLEYTTLADVTANTSIYYDPDPMNTVVEEDQEFV 1233

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKL---EIFPPV-------------- 1055
               +   + D     I ++P +   + + K++  +KL   EI   V              
Sbjct: 1234 ASYYEMPDEDT---PIARSPWLLRIELNPKMMADKKLTMGEIAAQVEAEYGQDLSCIFTD 1290

Query: 1056 ---DKSKIHFELYS---------------------LKNV----LPMVIVKGIKTVERVVI 1087
               D+  +   + S                     LK V    L  + ++GI+ V++V I
Sbjct: 1291 DNADRLVLRIRIMSDEEEKLQRSGETAVGQEDDTFLKRVEHNMLTQMKLRGIEGVKKVYI 1350

Query: 1088 AEKEKEKRKVKENGEK--KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
             E         + G K   ++ L  +GT L  VM    +D  +T SN I E+ Q LGIEA
Sbjct: 1351 REG-PSTHWFDDVGFKMMNEWMLDTDGTNLLDVMCYPQVDSTRTISNDIVEIIQVLGIEA 1409

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
             R  +++EI + +   G  ++ RH+  L D+MTFRG ++ ITR GI + D   L+  SFE
Sbjct: 1410 VRRALLNEIRQVISFDGAYVNYRHLACLCDVMTFRGHLMAITRHGINRDDSGPLVRCSFE 1469

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            +T + L +A++    D + GVSE +++G   PLGTGI+ +
Sbjct: 1470 ETVEILMDAAMFSEGDPLTGVSENVMLGQLAPLGTGIMDL 1509


>gi|16494|emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
          Length = 1860

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1307 (34%), Positives = 672/1307 (51%), Gaps = 176/1307 (13%)

Query: 91   VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
            VL + KR++D DC++L  +    RP+ +I+  + +PP  +RPSV+MD +  +E+D+T +L
Sbjct: 211  VLSVLKRISDADCQLLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQL 270

Query: 148  KRIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQVA-RPLSG 204
              II+ N +L+++  E N A + +    T  LQ  +A Y ++++ G P + Q + RP+  
Sbjct: 271  AMIIRHNENLKRQ--EKNGAPRHIISRFTQLLQFHIATYFDNELPGQPRATQKSGRPIKS 328

Query: 205  FVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHN 264
               RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  LTYPE V+ +N
Sbjct: 329  ICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYN 388

Query: 265  IEKLRQCIQNGPDKYPG---ARMIRYPDG---------------------------TARV 294
            IE+L++ +  GP   PG   A+ I   DG                           +   
Sbjct: 389  IERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYRYVLLSYSIHS 448

Query: 295  LYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNES 354
             + +   ++ + + S   V+RHL+DGD VLFNRQPSLH+MSIM HR RIMP+ T R N S
Sbjct: 449  THKRLFLEVVIFMLSWSQVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLS 508

Query: 355  VCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFL 414
            V +PYNADFDGDEMNMHVPQ+ E R E L LM V   + +P+    ++   QD L     
Sbjct: 509  VTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRK 568

Query: 415  ITRKDTFYDRAAF--SLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMR 472
            IT++DTF ++  F  +LM     DG     +P PAILKP  LWTGKQ+F+++I    N+ 
Sbjct: 569  ITKRDTFIEKDVFMNTLMWWEDFDG----KVPAPAILKPRPLWTGKQVFNLIIPKQINLL 624

Query: 473  VYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKD 532
             Y       +T       T GD ++RIE              EL++G L K TLG  N  
Sbjct: 625  RYSAWHADTETG----FITPGDTQVRIE------------RGELLAGTLCKKTLGTSNG- 667

Query: 533  GLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENY 592
             L  V+  + G  A    +     L   W+  +GF+IGI D        +K  + IS   
Sbjct: 668  SLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAK 727

Query: 593  EVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMS 652
                  I+++   +L  +PG     T E  +  +LN+ R+DAG +   SL   N+   M 
Sbjct: 728  TAVKDLIRQFQGKELDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMV 787

Query: 653  QCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSG 712
              GSKGS INISQM ACVGQQ+V G+R P GF  R+LPHF +    P ++GFV NS+  G
Sbjct: 788  TAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRG 847

Query: 713  LSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFL 772
            L+  EFFFH MGGREGL+DTAVKT++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFL
Sbjct: 848  LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 907

Query: 773  YGDDGMDPANMEGKSGEPL-----NFDRLLMKVKATCPPAGQRYLSPQQ------VSEIV 821
            YG+DGMD   +E +  + L      FDR   K +         YLS +       + E+ 
Sbjct: 908  YGEDGMDAVWIESQKLDSLKMKKSEFDRTF-KYEIDDENWNPTYLSDEHLEDLKGIRELR 966

Query: 822  EKQLAAYGK----------------ESCSEAFLNSLRKFFEGQQD-KLD-KKIKFVEDIG 863
            +   A Y K                +S     +N  R  +  Q+  K+D +KI  +  + 
Sbjct: 967  DVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVE 1026

Query: 864  WDDKSQILEEVTHKTSGI------TEKQLEVFI----------QTCFSRYRVKRVEAGTA 907
              D    L+E      G        +K   +F           +     Y++ R      
Sbjct: 1027 IVDAVDKLQERLLVVPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWV 1086

Query: 908  IGAIGA---QSIGEPG---------------TQMTLKTFHFAGVASMNITQGVPRIKEII 949
            IG I +   QS+  PG               TQMTL TFH+AGV++ N+T GVPR++EII
Sbjct: 1087 IGEIESRFLQSLVAPGEMIGCVPAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII 1146

Query: 950  NGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIAL 1007
            N AKRI TP ++  L  E + ++  A+ V+  +E T L  V ++ ++       S +I  
Sbjct: 1147 NVAKRIKTPSLSVYLTPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEE 1206

Query: 1008 DMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFE---- 1063
            D E ++  +   + D+  + I  +P +   + + +++  +KL +    +K  + F+    
Sbjct: 1207 DFEFVRSYYEMPDEDVSPDKI--SPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1264

Query: 1064 -------------------------------------LYSLK-NVLPMVIVKGIKTVERV 1085
                                                 L  ++ N+L  + ++GI  + +V
Sbjct: 1265 CIFNDDNAQKLILRIRIMNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKV 1324

Query: 1086 VIAEKEKEKRKVKENG---EKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLG 1142
             I  K+  K +  E G     +++ L  EG  L AVM  E +D  +T SNH+ E+ + LG
Sbjct: 1325 FI--KQVRKSRFDEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLG 1382

Query: 1143 IEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLA 1202
            IEA R  ++DE+   +   G  ++ RH+ +L D MT+RG ++ ITR GI + D   LM  
Sbjct: 1383 IEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRC 1442

Query: 1203 SFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRD 1249
            SFE+T D L +A+     D + GV+E I++G   P+GTG  ++   D
Sbjct: 1443 SFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLND 1489


>gi|327351527|gb|EGE80384.1| hypothetical protein BDDG_03325 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 855

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/733 (45%), Positives = 478/733 (65%), Gaps = 36/733 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKVT 59
           +R P ++ LR+  + K I ++C     K   C RC  +NG+VKKA  + L I H++ +  
Sbjct: 138 LRRPGIDNLRRMQIAKKINERCR----KTRTCYRCNAVNGVVKKAGTSALKITHEKFRAF 193

Query: 60  ESL---------------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 104
            +                Q F  A     + +     A   L+P+ VL LF+ ++D DCE
Sbjct: 194 NASSSVKKIPPPSKVVFDQSFEEAKKSNPDIEKHFKKAHDDLHPLRVLKLFRSVSDKDCE 253

Query: 105 VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
           +L L+    RPE  +   I  PP+ IRPSV  + + S E+D+T +L  IIQ+N +L+  L
Sbjct: 254 LLGLNPEEARPEVFLWQYIPAPPVCIRPSVGQEAA-STEDDLTAKLGDIIQSNINLKNAL 312

Query: 162 VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
            +       +  W+ +Q+++A YINSDV G+       +P+ GF QRLKGKQGRFRGNLS
Sbjct: 313 YKGAPVQTIIECWDYMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLS 371

Query: 222 GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
           GKRV+++ RTVISPDPNL++ EVA+P  +A  +TYPE+V+ +N EKLRQ I+NG   +PG
Sbjct: 372 GKRVDFSARTVISPDPNLRVDEVAVPQLIAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 431

Query: 282 ARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
           A  +  +  +    + +G   N +A +L+ G IV+RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct: 432 ANYVFKKSQNFKMNLKFGN-PNLVANDLEEGDIVERHIEDGDIVLFNRQPSLHKLSILSH 490

Query: 340 RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
            A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 491 FAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550

Query: 400 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
            ++++ QDF+T++++++ KD FYDR AF+ +C YM     R DLP P+++KP  LWTGKQ
Sbjct: 551 PIISAIQDFITAAYMLSSKDVFYDRKAFTHICLYMLQSDTRFDLPPPSVIKPQMLWTGKQ 610

Query: 460 LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
           +F+VL+RP+    V VNL    + +       +G        +  NDG++  RNSE++ G
Sbjct: 611 IFNVLMRPNKQSPVLVNLDAACRGFK----APKGTP----RDLDANDGWLCIRNSEVMCG 662

Query: 520 QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
            + K+T+G+G KD ++ V+LRD+G    +  MNRL++LSARW  N GFSIGI DV P  +
Sbjct: 663 VMDKSTIGSGKKDSVFYVMLRDFGPEVAAEGMNRLSRLSARWFTNMGFSIGITDVYPGDK 722

Query: 580 LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
           L ++K  ++ + Y  C+  I+ +  GKL+  PGCD   T+E  I+ IL+++R+ AG  C+
Sbjct: 723 LLEEKSHIVEDAYAQCDEVIQLFRTGKLEKAPGCDEQMTMENTISGILSKVRQQAGAICI 782

Query: 640 GSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEP 699
             L   NSPLIM+  GSKGS IN++QMVA VGQQ +GG+R  +GF DR+LPHFP+ A++P
Sbjct: 783 AELSRWNSPLIMATSGSKGSDINVAQMVALVGQQIIGGQRVQDGFQDRTLPHFPKHARQP 842

Query: 700 AAKGFVANSFYSG 712
            AKGFV NSF+ G
Sbjct: 843 PAKGFVRNSFFRG 855


>gi|406603917|emb|CCH44586.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
          Length = 1688

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1289 (34%), Positives = 670/1289 (51%), Gaps = 163/1289 (12%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L    +L +FK ++  DC  L   E   RPE LI++ + VPP  +RPS+  + +Q  E+
Sbjct: 160  LLTASEILTVFKHISPEDCRKLGFHEDYARPEWLILSVLPVPPPPVRPSISFNDTQRGED 219

Query: 142  DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
            D+T +L  I++ N ++Q+  ++ +     + F+SL     LQ  VA Y+++D+ G P ++
Sbjct: 220  DLTYKLSDIMKANINVQKLEMDGSPQHVINEFESL-----LQFHVATYMDNDIAGQPQAL 274

Query: 197  QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            Q + RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +AR LT
Sbjct: 275  QKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLT 334

Query: 256  YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
            YPE V+ +NI KL + ++NGP+++PGA+ +IR       + Y K    +   L+ G  V+
Sbjct: 335  YPETVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIV--LQYGWKVE 392

Query: 315  RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
            RHL D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 393  RHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 452

Query: 375  TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM 434
            +EE R E + +  V   + +P++ +  +   QD L     +T +D+F D     +   Y 
Sbjct: 453  SEETRAELMNIAAVPLQIVSPQSNKPCMGIVQDTLAGVRKMTLRDSFIDYDQM-MNILYW 511

Query: 435  GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
              G + V +P P ILKP  LWTGKQ+ S+ I    +M+ Y                   D
Sbjct: 512  IPGWNGV-VPQPTILKPKPLWTGKQMLSMAIPKGIHMQRY-------------------D 551

Query: 495  EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
            E   +  + PND  +   + +++ G + K T+G  N  GL   ++R+ G    S     L
Sbjct: 552  EGTTL--LSPNDNGMMVVDGQIMFGVVDKKTVGATNG-GLIHTVMREKGPKVCSELFGSL 608

Query: 555  AKLSARWIGNHGFSIGIDDV----QPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLK 610
             K+   W  ++GFSIGI D        KE++D     I+   E  +    E  + KL  K
Sbjct: 609  QKVVNFWFLHNGFSIGIGDTIADASTMKEITDA----IALAKEKVDDVTLEAQQNKLTAK 664

Query: 611  PGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACV 670
             G    ++ E  +   LN  R+ AG++   +L   N+   M   GSKGS INI+QM ACV
Sbjct: 665  HGMTLRESFEDNVIRYLNEARDKAGRSAEVNLKSLNNVKQMVSAGSKGSFINIAQMSACV 724

Query: 671  GQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLV 730
            GQQSV G+R   GF DR+LPHF +    P +KGFV NS+  GL+  EF+FH MGGREGL+
Sbjct: 725  GQQSVEGKRIAFGFADRTLPHFAKDDYSPESKGFVENSYLRGLTPQEFYFHAMGGREGLI 784

Query: 731  DTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS--- 787
            DTAVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D  ++E ++   
Sbjct: 785  DTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFIYGEDGLDACHVEKQTIDT 844

Query: 788  --GEPLNFDRL----LMKVKATCPP----AGQRYLSPQQVSEIVE---KQLAAYGKESCS 834
              GE   F++     LM  K +  P    +G+  +   ++ E+++   KQL    ++   
Sbjct: 845  IPGEHAAFEKRYHVDLMSPKTSIKPSLLESGKEIIGNTEIQEVLDTEYKQLVE-DRQFLR 903

Query: 835  EAFLN---------SLRKFFEGQQDKLDKKIKFVEDIGWDD-----------------KS 868
            + F++         ++R+  +  Q           D+  D+                  +
Sbjct: 904  KVFIDGEHNWPLPVNIRRIIQNAQQIFHIDPSKASDLTLDEIVREVQRLCSKLLVLRGDN 963

Query: 869  QILEEVTHKTSGI----------TEKQLEVFIQTCFSRYRVKR----------VEAGTAI 908
            +++ E     + +          T + +E +  T  + Y V            V  G  +
Sbjct: 964  RLVSEAQQNATALFQCLVRSRLTTRRVIEEYRLTSVAFYWVTAQIESQFQRSVVHPGEMV 1023

Query: 909  GAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--EC 966
            G + AQSIGEP TQMTL TFHFAGVAS  +T GVPR+KEI+N AK + TP +T  L  E 
Sbjct: 1024 GVVAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLDPEY 1083

Query: 967  NDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKE 1026
              ++  A+ ++  IE T L  V  + +I       S VI  D E + + H  I  + ++ 
Sbjct: 1084 AADQERAKEIRSAIEHTTLKSVTIATEIYYDPEPRSTVIEEDEEMV-NLHFEIPDEEIEA 1142

Query: 1027 SI-VQTP---KIKLKQQHIKVLDFRKLEIFPPV--------------------------- 1055
            SI  Q+P   +I+L +  +   D    E+   +                           
Sbjct: 1143 SIDKQSPWLLRIELDRTQMNDKDLTMAEVGEKIKETFGDDLFIIWSEDNAEKLIIRCRVV 1202

Query: 1056 ------DKSKIHFELYSLK----NVLPMVIVKGIKTVERVVIAEKEKEKRKV-KENGEKK 1104
                  D+     E   LK    N+L  + ++G+  + RVV+    K  RK+  E G+  
Sbjct: 1203 RDPKSMDEDSEAEEDQMLKRIESNMLEAITLRGVPDITRVVMM---KYDRKLPDETGKYA 1259

Query: 1105 K---YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAH 1161
            K   + L  +G  L  VM   G+D  +  +N   ++   LGIEA R  +  E+   + + 
Sbjct: 1260 KVPEWVLETDGVNLAEVMCVPGVDASRIYTNSFIDILTVLGIEAGRASLYKEVYNVIASD 1319

Query: 1162 GMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD 1221
            G  ++ RHM LL D+MT RG ++ +TR GI + D   LM  SFE+T + L  A      D
Sbjct: 1320 GSYVNYRHMALLVDVMTSRGHLMAVTRHGINRNDTGALMRCSFEETVEILLEAGAAAELD 1379

Query: 1222 RIEGVSECIIMGIPMPLGTGILKIRQRDA 1250
               GVSE +I+G   P+GTG   +   D+
Sbjct: 1380 DCRGVSENVILGQLAPVGTGAFDVMVDDS 1408


>gi|16505|emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]
          Length = 1841

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/1279 (35%), Positives = 667/1279 (52%), Gaps = 154/1279 (12%)

Query: 91   VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
            VL + KR++D DC++L  +    RP+ +I+  + +PP  +RPSV+MD +  +E+D+T +L
Sbjct: 219  VLSVLKRISDADCQLLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQL 278

Query: 148  KRIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQVA-RPLSG 204
              II+ N +L+++  E N A   +    T  LQ  +A Y ++++ G P + Q + RP+  
Sbjct: 279  AMIIRHNENLKRQ--EKNGAPAHIISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKS 336

Query: 205  FVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHN 264
               RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  LTYPE V+ +N
Sbjct: 337  ICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYN 396

Query: 265  IEKLRQC--IQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDV 322
            IE+L +   I     KY    +IR     + + Y K  +   +EL  G  V+RHL+DGD 
Sbjct: 397  IERLVRLVFISFSETKY----IIRDDGQRSDLRYLKKSSDQHLEL--GYKVERHLQDGDF 450

Query: 323  VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA 382
            VLFNRQPSLH+MSIM HR RIMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E 
Sbjct: 451  VLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 510

Query: 383  LLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF--SLMCCYMGDGMDR 440
            L LM V   + +P+    ++   QD L     IT++DTF ++  F  +LM     DG   
Sbjct: 511  LELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDG--- 567

Query: 441  VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
              +P PAILKP  LWTGKQ+F+++I    N+  Y       +T       T GD ++RIE
Sbjct: 568  -KVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHADTETG----FITPGDTQVRIE 622

Query: 501  TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
                          EL++G L K TLG  N   L  V+  + G  A    +     L   
Sbjct: 623  ------------RGELLAGTLCKKTLGTSNG-SLVHVIWEEVGPDAARKFLGHTQWLVNY 669

Query: 561  WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
            W+  +GF+IGI D        +K  + IS         I+++   +L  +PG     T E
Sbjct: 670  WLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFE 729

Query: 621  AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
              +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R 
Sbjct: 730  NRVDQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 789

Query: 681  PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
            P GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++TG
Sbjct: 790  PFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 849

Query: 741  YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL-----NFDR 795
            Y+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L      FDR
Sbjct: 850  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDR 909

Query: 796  LLMKVKATCPPAGQRYLSPQQ------VSEIVEKQLAAYGK----------------ESC 833
               K +         YLS +       + E+ +   A Y K                +S 
Sbjct: 910  TF-KYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDST 968

Query: 834  SEAFLNSLRKFFEGQQD-KLD-KKIKFVEDIGWDDKSQILEEVTHKTSGI------TEKQ 885
                +N  R  +  Q+  K+D +KI  +  +   D    L+E      G        +K 
Sbjct: 969  WPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDDALSVEAQKN 1028

Query: 886  LEVFI----------QTCFSRYRVKRVEAGTAIGAIGA---QSIGEPG------------ 920
              +F           +     Y++ R      IG I +   QS+  PG            
Sbjct: 1029 ATLFFNILLRSTLASKRVLEEYKLSRERFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIG 1088

Query: 921  ---TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDNENAARV 975
               TQMTL TFH+AGV++ N+T GVPR++EIIN AKRI TP ++  L  E + ++  A+ 
Sbjct: 1089 EPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLTPEASKSKEGAKT 1148

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIK 1035
            V+  +E T L  V ++ ++       S +I  D E ++  +   + D+  + I  +P + 
Sbjct: 1149 VQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDEDVSPDKI--SPWLL 1206

Query: 1036 LKQQHIKVLDFRKLEIFPPVDKSKIHFE-------------------------------- 1063
              + + +++  +KL +    +K  + F+                                
Sbjct: 1207 RIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQ 1266

Query: 1064 ---------LYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRKVKENG---EKKKYRLLV 1110
                     L  ++ N+L  + ++GI  + +V I  K+  K +  E G     +++ L  
Sbjct: 1267 DESAEDDVFLKKIESNMLTEMALRGIPDINKVFI--KQVRKSRFDEEGGFKTSEEWMLDT 1324

Query: 1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
            EG  L AVM  E +D  +T SNH+ E+ + LGIEA R  ++DE+   +   G  ++ RH+
Sbjct: 1325 EGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1384

Query: 1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
             +L D MT+RG ++ ITR GI + D   LM  SFE+T D L +A+     D + GV+E I
Sbjct: 1385 AILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENI 1444

Query: 1231 IMGIPMPLGTGILKIRQRD 1249
            ++G   P+GTG  ++   D
Sbjct: 1445 MLGQLAPIGTGDCELYLND 1463


>gi|432920271|ref|XP_004079921.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Oryzias
            latipes]
          Length = 1599

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/1289 (35%), Positives = 675/1289 (52%), Gaps = 158/1289 (12%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L+P  V  +FKR++D +  +L +     RPE +I+T + VPP+A+RP+V+M GS  N++
Sbjct: 213  LLSPERVHEIFKRISDEEDLILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQD 272

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
            D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 273  DLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 332

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A  +T+PE V
Sbjct: 333  PLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIV 392

Query: 261  SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
            +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ D
Sbjct: 393  TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQIGYKVERHMCD 450

Query: 320  GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
            GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 451  GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 510

Query: 380  TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDG 437
             E   L  V   + TP++   ++   QD LT+    T++D F +R      LM     DG
Sbjct: 511  AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 570

Query: 438  MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
                 +P PAILKP  LWTGKQ+FS++I  H N+          +T+S     T  D+E 
Sbjct: 571  ----KMPQPAILKPRPLWTGKQIFSLIIPGHINVI---------RTHS-----THPDDED 612

Query: 498  R--IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
                + + P D  V   N ELI G L K +LG  +   L  +   + G   T    + + 
Sbjct: 613  SGPYKHISPGDTKVIVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQ 671

Query: 556  KLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
             +   W+   G SIGI D +   K   D +  +     +V  V  K +N  +L+  PG  
Sbjct: 672  TVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNT 730

Query: 615  AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
              QT E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++A VGQQ+
Sbjct: 731  LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQN 790

Query: 675  VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
            V G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAV
Sbjct: 791  VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 850

Query: 735  KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK---SGEPL 791
            KTA+TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+   N+E +   S +P 
Sbjct: 851  KTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVEFQNLASLKPS 910

Query: 792  N------------FDRLLMKV---------------------------------KATCPP 806
            N             DR L +V                                 +A  P 
Sbjct: 911  NKAFEKKFKFDCTNDRALRRVLQEDVVKDVMTNAHVQSVLEKEFDKMKEDREILRAIFPT 970

Query: 807  AGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDD 866
               + + P  ++ ++      +     +   LN LR   EG Q+ L KK+  V   G D 
Sbjct: 971  GDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLR-VVEGVQE-LSKKLIIVN--GDDP 1026

Query: 867  KS-QILEEVT-----HKTSGITEKQL--------EVF------IQTCFSRYRVKRVEAGT 906
             S Q  E  T     H  S +  K++        E F      I+T F++        G 
Sbjct: 1027 LSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQ---SIAHPGE 1083

Query: 907  AIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELEC 966
             +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +KR  TP +T  L  
Sbjct: 1084 MVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLG 1143

Query: 967  NDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIV 1024
                +A R   +  R+E T L +V  +  I       + V+A D E +   +   + D+ 
Sbjct: 1144 QAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDFDVT 1203

Query: 1025 KESIVQTPKIKLKQQHIK---------------------------------VLDFRKL-- 1049
            + S     +I+L ++H+                                  VL  R +  
Sbjct: 1204 RISPWLL-RIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS 1262

Query: 1050 ------EIFPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRK---VKE 1099
                  E    VDK      L  ++ N+L  + ++GI+ + +V +   + + +K   + E
Sbjct: 1263 DENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITE 1322

Query: 1100 NGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINE 1156
            +GE K   ++ L  +G  L  V+  + +D  +T SN I E+   LGIEA R  +  E+  
Sbjct: 1323 DGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYH 1382

Query: 1157 TMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASV 1216
             +   G  ++ RH+ LL D MT RG ++ ITR GI + D   LM  SFE+T D L  A+ 
Sbjct: 1383 VISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEAAS 1442

Query: 1217 NGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            +G  D ++GVSE I++G   P GTG   +
Sbjct: 1443 HGECDPMKGVSENIMLGQLAPAGTGCFDL 1471


>gi|307181433|gb|EFN69028.1| DNA-directed RNA polymerase II subunit RPB1 [Camponotus floridanus]
          Length = 1906

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1287 (34%), Positives = 667/1287 (51%), Gaps = 153/1287 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            IL+      + K + D +  +L +     RP+ +I+T + VPP+++RP+VIM GS  N++
Sbjct: 208  ILSAERAWEILKHIKDEESFILGMDPKFARPDWMIVTVLPVPPLSVRPAVIMYGSAKNQD 267

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
            D+T +L  II++N  L +      +A   L   + LQ  VA  +++D+ G+P +MQ + +
Sbjct: 268  DLTHKLADIIKSNNELLRNEQSGAAAHVILENIKMLQFHVATLVDNDMPGMPRAMQKSGK 327

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            PL     RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ LT+PE V
Sbjct: 328  PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIV 387

Query: 261  SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
            +  NI+K++  ++ G  +YPGA+ I   +G  R+          + L+ G  V+RH+ DG
Sbjct: 388  TPFNIDKMQVLVRRGNSQYPGAKYIVRDNG-ERIDLRFHPKSSDLHLQCGYRVERHIRDG 446

Query: 321  DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
            D+V+FNRQP+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R 
Sbjct: 447  DLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRA 506

Query: 381  EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGM 438
            E   +      + TP+  + ++   QD LT+   +T++D F ++      LM     DG 
Sbjct: 507  EVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNLLMFLPSWDG- 565

Query: 439  DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
                +P P ILKP  LWTGKQLFS++I  + NM          +T+S     T  DEE  
Sbjct: 566  ---KMPQPCILKPKPLWTGKQLFSLIIPGNVNMI---------RTHS-----THPDEEDD 608

Query: 499  --IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
               + + P D  V   + EL+ G L K TLG  +   L  + + + G          +  
Sbjct: 609  GPYKWISPGDTKVMVEHGELVMGILCKKTLGT-SAGSLLHICMLELGHDVCGRFYGNIQT 667

Query: 557  LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
            +   W+   G SIGI D     +   +  K I +  E     I++ +  +L+  PG    
Sbjct: 668  VINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLR 727

Query: 617  QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
            QT E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V 
Sbjct: 728  QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVE 787

Query: 677  GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
            G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKT
Sbjct: 788  GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT 847

Query: 737  ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
            A+TGY+ RRLIKA+E + + YD +VRN+ G ++Q  YG+DG+    +E ++   +     
Sbjct: 848  AETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKVSNK 907

Query: 797  LMKVKATCPPAGQRYL--------------SPQQVSEIVEKQLAAYGKE----------- 831
              + K    P  +RYL              S + +SE+ E++     K+           
Sbjct: 908  AFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISEL-EREWEQLNKDRAVLREIFPSG 966

Query: 832  ------SCS-EAFLNSLRKFF----------------EGQQDKLDKKIKFVEDIGWDDKS 868
                   C+ +  + +++K F                +G +D LDK I    D     ++
Sbjct: 967  ESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLDKCIIVAGDDRLSKQA 1026

Query: 869  --------QILEEVTHKTSGITEK------QLEVFIQTCFSRYRVKRVEAGTAIGAIGAQ 914
                    Q L   T  T  ++E+        E  I    +R++  +V  G  +GA+ AQ
Sbjct: 1027 NENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQ 1086

Query: 915  SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL---ECNDNEN 971
            S+GEP TQMTL TFHFAGV+S N+T GVPR+KEIIN +K+   P +T  L      D E 
Sbjct: 1087 SLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAEK 1146

Query: 972  AARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIA------------------------- 1006
            A  V+  R+E T L +V  +  I       + VIA                         
Sbjct: 1147 AKNVL-CRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLL 1205

Query: 1007 ---LDMETIQDAHL------------------CINADIVKESIVQTPKIKLKQQHIKVLD 1045
               LD + + D  L                  CI  D   E +V   +I +     K  D
Sbjct: 1206 RIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI-MNSDDNKFQD 1264

Query: 1046 FRKLEIFPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRK---VKENG 1101
              +      VDK +    L  ++ N+L  + ++GI+ + +V +   + + +K   + E G
Sbjct: 1265 TEEET----VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETG 1320

Query: 1102 EKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETM 1158
            E K   ++ L  +GT L  V+    +D  +T SN I E+ Q LGIEA R  +  E+N  +
Sbjct: 1321 EFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVL 1380

Query: 1159 KAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNG 1218
            + +G+ ++ RH+ LL D+MT +G ++ ITR GI + D   LM  SFE+T D L +A+ + 
Sbjct: 1381 QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHA 1440

Query: 1219 RDDRIEGVSECIIMGIPMPLGTGILKI 1245
              D + GVSE IIMG    +GTG   +
Sbjct: 1441 EVDPMRGVSENIIMGQLPRIGTGCFDL 1467


>gi|429851276|gb|ELA26479.1| DNA-dependent RNA polymerase ii largest [Colletotrichum
            gloeosporioides Nara gc5]
          Length = 1754

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1275 (33%), Positives = 667/1275 (52%), Gaps = 150/1275 (11%)

Query: 94   LFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQS---NENDITERL 147
            + +R++D D   + L+    RPE +I+T + VPP  +RPS+ MDG+     NE+D+T +L
Sbjct: 220  ILRRISDDDLRDMGLNLEYARPEWMIVTVLPVPPPPVRPSISMDGTGQGLRNEDDLTYKL 279

Query: 148  KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
              II+ N++++Q + E + A  +    + LQ  VA Y+++D+ G P ++Q + RP+    
Sbjct: 280  GDIIRANSNVKQAIREGSPAHIAQDFEQLLQYHVATYMDNDIAGQPRALQKSGRPVKAIR 339

Query: 207  QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
             RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LTYPE V+ +NI 
Sbjct: 340  ARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNIG 399

Query: 267  KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
            +L + +QNGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL  GD ++FN
Sbjct: 400  RLHELVQNGPNEHPGAKYVIRSDGT-RIDLRHHRRAGQISLEYGWKVERHLITGDYIIFN 458

Query: 327  RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
            RQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R E   L 
Sbjct: 459  RQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELC 518

Query: 387  GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
             V  N+ +P+    L+   QD L  ++ + R+D F  + A   +  ++   DG+      
Sbjct: 519  LVPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLTKEAVMNIMLWVPNWDGVIPPP-- 576

Query: 445  TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
              AI++P   WTGKQ+ S+ I P+      V+L     +  +  ++ EG           
Sbjct: 577  --AIIRPRPRWTGKQIMSMAI-PN-----IVSLHNAPDSKEDNPLKDEG----------- 617

Query: 505  NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
                +  ++ EL+ G L K  +G  +  G+  ++  ++G  A+   +N + ++   W+ +
Sbjct: 618  ----LLIQSGELLYGLLSKKNIGAASG-GIVHIVYNEHGPEASMKFLNGVQQVVNYWLLH 672

Query: 565  HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
            +GFSIGI D  P K   +K    I E+        ++    +L+  PG +  +T E+ ++
Sbjct: 673  NGFSIGIGDTIPDKLTIEKVQVHIDEHKAEVEAYTQQATANELEPLPGMNIRETFESKVS 732

Query: 625  DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
              LN  R+ AG     SL   N+ + M+  GSKGS INISQM A VGQQ V G+R P GF
Sbjct: 733  KALNTARDKAGTTTQKSLKDLNNAVTMASSGSKGSSINISQMTALVGQQIVEGKRIPFGF 792

Query: 685  IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
              R+LPHF +    P A+GFV NS+  GL+ +EFFFH M GREGL+DTAVKTA+TGY+ R
Sbjct: 793  KYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQR 852

Query: 745  RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF------DRLLM 798
            RL+KALED+S +YD +VRN+ G I+QFLYG+DG+D   +E +  + LN       DR  +
Sbjct: 853  RLVKALEDVSAKYDGTVRNSLGDILQFLYGEDGLDAIYIEKQRMDHLNMSDKKFADRFRL 912

Query: 799  KVKATCPP-------AGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDK 851
             V     P        G        V ++++++  A   +      +N  RK  E  Q  
Sbjct: 913  DVMDETRPDELDWLEYGNEISGDPSVQQLLDEEYEALLHDRKQVRKINFKRKDDESMQLP 972

Query: 852  LD--------KKIKFVEDIGWDD------------------------------------- 866
            L+        KK+  VED    D                                     
Sbjct: 973  LNIVRLMETSKKLFAVEDFQRSDLKPQDVIPAVQAMLNRMTIVRGNDEISKEADRSATIL 1032

Query: 867  -KSQILEEVTHKTSGITEK----QLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGT 921
             K+QI   +  K     ++      E  +    +R+    V  G  +G I AQSIGEP T
Sbjct: 1033 FKAQIRSRLAFKRIACQQRLNKMAFEHVLGELEARWDRAFVSPGEMVGVIAAQSIGEPAT 1092

Query: 922  QMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGR 979
            QMTL TFHFAGV+S N+T GVPR+KEI+N A+ I TP +   L  E N ++ AA+ ++  
Sbjct: 1093 QMTLNTFHFAGVSSKNVTLGVPRLKEILNLAQNIKTPSMVVYLSGEENASQEAAKALRST 1152

Query: 980  IEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQ 1039
            +E T L  V    +I     + S  I  D++ ++  +L  +    +        ++L   
Sbjct: 1153 VEHTTLRSVTAVTEIYYDPIITSTNIPDDLDMVESYYLIPDETHDRAEDQSRWLLRLTLD 1212

Query: 1040 HIKVLD--------FRKLEIFPPVDKSKIHFELYSLKNVL---PM--------------- 1073
              K+LD         R+++   P D + I  +  + + V+   PM               
Sbjct: 1213 RQKLLDKELTVEDVARRIKEEYPNDLAVIFSDNNAEEQVIRIRPMHAGNDDKDEDGEKKM 1272

Query: 1074 ----------------VIVKGIKTVERVVIAEKEK-------EKRKVKENGEKKKYRLLV 1110
                            + ++G+K +ER  + ++ K            K +    ++ L  
Sbjct: 1273 EDDVMLKRLETHLLDTLSLRGVKGIERAFLNKETKLIETEDGALLAAKADERCSEWYLDT 1332

Query: 1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
             GT L+ V+  +G+D  +T +NH+++V +  GIEAAR  ++ E+ + +   G  ++ RH+
Sbjct: 1333 SGTALRQVLSVDGVDSTRTYTNHLWQVVEVFGIEAARSALVRELTQVLAFDGSYVNHRHL 1392

Query: 1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
             LL D+MT+RG +  +TR GI + D   LM  SFE+T + L  A+  G  D   G+SE +
Sbjct: 1393 ALLCDVMTYRGTISAVTRHGINRADTGALMRCSFEETVEILLEAAAVGELDDCRGISENV 1452

Query: 1231 IMGIPMPLGTGILKI 1245
            ++G   P+GTG  ++
Sbjct: 1453 MLGQMAPMGTGHFEV 1467


>gi|449672715|ref|XP_002167919.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like, partial
            [Hydra magnipapillata]
          Length = 848

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/866 (44%), Positives = 524/866 (60%), Gaps = 110/866 (12%)

Query: 451  PVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVY 510
            PVELWTGKQ+ SV++RP+      VNL  K K YS        DEE     +C ND +V 
Sbjct: 1    PVELWTGKQVISVMLRPNNLSSTLVNLRTKGKNYSK-------DEE-----LCVNDSYVV 48

Query: 511  FRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIG 570
              NS+L++G L K  +G+G+KD ++ VLLRD+G  A +  M RLA+++  ++ N GFSIG
Sbjct: 49   LHNSDLLAGTLDKNIIGSGSKDTIFYVLLRDFGEQAAADAMWRLARITPWFLMNFGFSIG 108

Query: 571  IDDVQPKKELSDKKGKLIS---ENYEVCNVKIKEY--------NEGKLQLKPGCDAAQTL 619
            I DV P + L   K  L+     NY    + +++         N+ + +L     A + +
Sbjct: 109  IGDVTPGQSLITAKETLLKAGLHNYGYYQLWLRKTKMSSVSGANDARCRLTTYL-AVENV 167

Query: 620  EAVITDI----LNRIREDA----GKA----CMGSLPW---------RNSPL--------- 649
             +  T +    +  +R+      GK      + +L W         ++SPL         
Sbjct: 168  HSAGTKVTGMHIYFLRQSMTFPKGKTPIHPYIQTLCWLGTAMLVHQKHSPLAIILRELSV 227

Query: 650  IMSQCGS--------KGSPI------------NISQMVACVGQQSVGGRRAPNGFIDRSL 689
            I   CG           SP+            NISQM+ACVGQQ++ G R P+GF  RSL
Sbjct: 228  IREHCGKACLQELHRSNSPLIMALSGSKGSFINISQMIACVGQQAISGHRTPDGFEGRSL 287

Query: 690  PHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKA 749
            PHF + +K PAAKGFV NSF+SG++ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+
Sbjct: 288  PHFKKHSKIPAAKGFVGNSFFSGMTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKS 347

Query: 750  LEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQ 809
            LEDLS+QYD +VR++   +VQF YG+DG+DP  MEGK  +PL+ +RL   ++ T P   +
Sbjct: 348  LEDLSLQYDYTVRSSMNDVVQFTYGEDGLDPVCMEGKD-KPLDIERLFHHLRCTYPCNHE 406

Query: 810  RYLSPQQVSEIVEKQL-AAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKS 868
            + L+ +++ ++ E     +   + C    +  LR FF+    KL K +K  E +   ++ 
Sbjct: 407  KSLNTEEILKLSENVYNESISVQKCGSLLIQDLRDFFK----KLVKNLKLSESLLLSNRK 462

Query: 869  QILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTF 928
                     T+ I E  +   I  C  RY   R E GTA+GA+ AQSIGEPGTQMTLKTF
Sbjct: 463  --------GTAHIAETHVIKTINECAKRYLHARCEPGTAVGALCAQSIGEPGTQMTLKTF 514

Query: 929  HFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQV 988
            HFAGVA+MNIT GVPRIKEIIN +K+ISTPIITA LE +D+   AR VKGR+EKT LG+V
Sbjct: 515  HFAGVATMNITLGVPRIKEIINASKKISTPIITAPLEVDDDIEYARSVKGRVEKTTLGEV 574

Query: 989  AKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRK 1048
             + I+ V T     ++I +D + I    L I+A+ +K ++  +PK+KLK Q + +     
Sbjct: 575  CEYIEEVFTPDACYLLIKIDSQRINLLKLEIDANAIKYALCISPKLKLKPQFVSIHGKNV 634

Query: 1049 LEIFP-PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYR 1107
            L + P    KS +++ + +LK  L  V+VKG  TV R +I   +++K      G K  Y+
Sbjct: 635  LTVHPIETAKSSMYYIMQNLKCQLQHVLVKGYPTVTRAIIHLDDEKK------GSKNSYK 688

Query: 1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
            LLVEG  L++VMG  GI   +  SN+  EV++TLGIEAAR+ I++EI  TMK+HGMSID 
Sbjct: 689  LLVEGDDLRSVMGTRGIKASECTSNNTIEVEKTLGIEAARVTIMNEITYTMKSHGMSIDS 748

Query: 1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHL-----FNASVNGRDDR 1222
            RH+MLLADLMTFRGEVLGITRFG+ KM +SVLMLASFE+TADH      FN+        
Sbjct: 749  RHVMLLADLMTFRGEVLGITRFGLAKMKESVLMLASFERTADHXXXXXHFNS-------- 800

Query: 1223 IEGVSECIIMGIPMPLGTGILKIRQR 1248
              GVSECIIMGIPM LGTG+ K+ Q+
Sbjct: 801  --GVSECIIMGIPMNLGTGMFKLIQK 824


>gi|324120570|dbj|BAJ78676.1| RNA polymerase II largest subunit [Neocolochelyna itoi]
          Length = 1815

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1279 (34%), Positives = 672/1279 (52%), Gaps = 155/1279 (12%)

Query: 94   LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
            + K +TD +  +L +     RP+ +I+T + VPP+++RP+V+M GS  N++D+T +L  I
Sbjct: 217  ILKHITDEESFILGMDPKFARPDWMIVTVLPVPPLSVRPAVVMYGSAKNQDDLTHKLADI 276

Query: 151  IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRL 209
            I++N  L +      +A       + LQ  VA  +++D+ G+P +MQ + +PL     RL
Sbjct: 277  IKSNNELLRNEQAGAAAHVISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARL 336

Query: 210  KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
            KGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ LT+PE V+  NI+K++
Sbjct: 337  KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQ 396

Query: 270  QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLEDGDVVLFNRQ 328
            + ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ DGD+V+FNRQ
Sbjct: 397  ELVRRGNSQYPGAKYIVRDNGERIDL--RFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQ 454

Query: 329  PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGV 388
            P+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R E   +   
Sbjct: 455  PTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 514

Query: 389  QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLPTP 446
               + TP+  + ++   QD LT+   +T++D F ++      LM     DG     +P P
Sbjct: 515  PRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMHLPSWDG----KMPQP 570

Query: 447  AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI--RIETMCP 504
             ILKP  LWTGKQ+FS++I  + NM          +T+S     T  DEE   + + + P
Sbjct: 571  CILKPKPLWTGKQIFSLIIPGNVNMI---------RTHS-----THPDEEDDGQYKWISP 616

Query: 505  NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
             D  V   + EL+ G L K TLG  +   L  + + + G          +  +   W+  
Sbjct: 617  GDTKVMVEHGELVMGILCKKTLGT-SAGSLLHICMLELGHDVCGRFYGNIQTVINNWLLL 675

Query: 565  HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
             G SIGI D     +   +  K I +  E     I++ +  +L+  PG    QT E  + 
Sbjct: 676  EGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVN 735

Query: 625  DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
             ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P GF
Sbjct: 736  RILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGF 795

Query: 685  IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
              R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKTA+TGY+ R
Sbjct: 796  RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQR 855

Query: 745  RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATC 804
            RLIKA+E + + YD +VRN+ G ++Q  YG+DG+    +E ++   +       + K   
Sbjct: 856  RLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKF 915

Query: 805  PPAGQRYL--------------SPQQVSEIVEKQLAAYGKESCS--EAF----------L 838
             P  +RYL              S + +SE+ E++     K+  +  E F           
Sbjct: 916  DPTNERYLRRIFSEDIVREMMGSGEVISEL-EREWEQLNKDRVALREIFPSGESKVVLPC 974

Query: 839  NSLRKFFEGQQ-DKLDKK----------IKFVEDI--------GWDDKS----------- 868
            N  R  + GQ+   ++K+          I+ V+D+        G DD S           
Sbjct: 975  NLQRMIWNGQKIFHINKRAPTDLSPIRVIQGVKDLLEKCIIVAGKDDLSKLANTNATLLF 1034

Query: 869  QILEEVTHKTSGITEK------QLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQ 922
            Q L   T  T  ++E+        E  I    +R++  +V  G  +GA+ AQS+GEP TQ
Sbjct: 1035 QCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQVFPGEMVGALAAQSLGEPATQ 1094

Query: 923  MTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL---ECNDNENAARVVKGR 979
            MTL TFHFAGV+S N+T GVPR+KEIIN +K+   P +T  L      D E A  V+  R
Sbjct: 1095 MTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL-CR 1153

Query: 980  IEKTLLGQVAKSIKIVMTSRLASIVIA----------------------------LDMET 1011
            +E T L +V  +  I       + VIA                            LD + 
Sbjct: 1154 LEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKR 1213

Query: 1012 IQDAHL------------------CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP 1053
            + D  L                  CI  D   E +V   +I +     K  D  +     
Sbjct: 1214 MTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI-MNSDDNKFQDTEEET--- 1269

Query: 1054 PVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KY 1106
             VDK +    L  ++ N+L  + ++GI+ + +V +   + + +K   V + GE K   ++
Sbjct: 1270 -VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVVTDTGEFKAIAEW 1328

Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  +GT L  V+    +D  +T SN I E+ Q LGIEA R  +  E+N  ++ +G+ ++
Sbjct: 1329 LLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVN 1388

Query: 1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
             RH+ LL D+MT +G ++ ITR GI + D   LM  SFE+T D L +A+ +   D + GV
Sbjct: 1389 YRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDPMRGV 1448

Query: 1227 SECIIMGIPMPLGTGILKI 1245
            SE IIMG    LGTG   +
Sbjct: 1449 SENIIMGQLPRLGTGCFDL 1467


>gi|242778248|ref|XP_002479200.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Talaromyces stipitatus ATCC 10500]
 gi|218722819|gb|EED22237.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Talaromyces stipitatus ATCC 10500]
          Length = 1755

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1284 (34%), Positives = 654/1284 (50%), Gaps = 153/1284 (11%)

Query: 86   LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNI---AVPPIAIRPSVIMDGSQSN 139
            + P     +F+ ++  D  ++ LS    RPE +I+T +            S      Q  
Sbjct: 216  ITPAMAYNIFRSISHEDVRIMGLSNDYARPEWMILTVLIVPPPVVRPSVVSGKSSSGQRA 275

Query: 140  ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA 199
            E+D+T +L  II+ N +LQ+   E             LQ  VA Y+++D+ G P +M  +
Sbjct: 276  EDDLTFKLAEIIRANQNLQRCEQEGAPEHVVREFEALLQYHVATYMDNDIAGQPKAMTKS 335

Query: 200  -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
             RP+     RLKGK+GR R NL GKRV+++ RTVI  DPNL + EV  P   A ILTYPE
Sbjct: 336  NRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVICGDPNLSLFEVGTPRSSAMILTYPE 395

Query: 259  RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
             V+ +NIE L++ + NGP  YPGAR I   +G    L  +   + +  L  G  V+RHL 
Sbjct: 396  VVTPYNIEFLQKLVNNGPTIYPGARYIVRDNGERIDL--RMARKTSSNLLYGWKVERHLL 453

Query: 319  DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
            DGDV+LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMNMHVPQ+EEA
Sbjct: 454  DGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQSEEA 513

Query: 379  RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
            R E   L  V  N+ +P+    L+   QD L   + I R+D F  +     +  ++ D  
Sbjct: 514  RAELQELALVPLNIVSPQRNGPLMGIVQDSLCGIYKICRRDVFLTKDQVMNLMLWVPD-W 572

Query: 439  DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            D V +P PAILKP   WTGKQ+ S+++    N                 L+R + D+   
Sbjct: 573  DGV-IPQPAILKPRPRWTGKQIISMVLPSGLN-----------------LLRIDKDKAPL 614

Query: 499  IETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
             E   P  DG +     +L+ G   K T+G  +  G+   +  +YG  A     +   ++
Sbjct: 615  SEKFSPLADGGLLVHGGQLMYGMFSKKTVG-ASGGGIVHTIFNEYGPDAAVTFFDGAQRV 673

Query: 558  SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
               W+ ++GFSIGI D  P K+  ++    +          ++   E  L+  PG +  +
Sbjct: 674  VNYWLLHNGFSIGIGDTIPDKKTIERIEAAVRAGKAEVEQIVQSATENTLEPLPGMNIRE 733

Query: 618  TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
            T E+ ++  LN  RE+AG     SL   N+ + M++ GSKGS INISQM A VGQQSV G
Sbjct: 734  TFESKVSRALNNAREEAGSETEKSLKDLNNAVQMARSGSKGSTINISQMTAIVGQQSVEG 793

Query: 678  RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            +R P GF  R+LPHF +    P ++GFV NS+  GL+ TEF+FH MGGREGL+DTAVKTA
Sbjct: 794  KRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFYFHAMGGREGLIDTAVKTA 853

Query: 738  DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEG------KSGEPL 791
            +TGY+ R+L+KALE+L ++YD +VRN+ G I+QFLYG+DG+D A++E       K  +  
Sbjct: 854  ETGYIQRKLVKALEELMVKYDGTVRNSLGDIIQFLYGEDGLDGAHIENQRVDIIKCSDEQ 913

Query: 792  NFDRL---LMKVKATCPP-------------AGQRYLSPQQVSEIVEKQL---AAYGKES 832
              DR    LM  + T  P               QRYL  +  + + +++     A G E 
Sbjct: 914  FRDRFRVDLMDPERTLGPEVLEQAAEIEGDVEVQRYLDEEWEALLKDREFLRSVAKGDEE 973

Query: 833  CSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVT----------------- 875
              +  LN +++  E  +     K   + D+     ++++ +V                  
Sbjct: 974  MMQLPLN-VQRILESAKTTFHIKEGTISDL---HPAEVIPQVQALLDRLVIVRGDDVISK 1029

Query: 876  -HKTSGITEKQLEVFIQTCFSR----YRVKRVEAGTAIGAI------------------G 912
              +TS     + ++  +  F R    Y + ++     +GAI                   
Sbjct: 1030 EAQTSATLLFKAQLRSRLAFKRLVTQYSMNKLAFNHVLGAIEMRFARAQANPGEMVGVLA 1089

Query: 913  AQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECN--DNE 970
            AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A  I TP +T   E +   ++
Sbjct: 1090 AQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVYQEPHRKHDK 1149

Query: 971  NAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKES--- 1027
             +A+ ++  +E T L  V ++ +I     + S VI  D + ++ ++  I  D+  +S   
Sbjct: 1150 ESAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTVIENDRDMVE-SYFIIPEDVADDSSRQ 1208

Query: 1028 -------IVQTPKI------------KLKQQHIK--------------VLDFRKLEIFPP 1054
                   ++  PK+            ++K+Q+ +              V+  R+L     
Sbjct: 1209 SKWLLRIVLSRPKLLDKGLTVQDVATRIKEQYPRDIAVIFSDNNADEQVIRIRQLHDAKE 1268

Query: 1055 VDKSKIHFELYSLK----NVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEK------- 1103
             +  +      +LK    ++L  + ++G+  VER  I   EK+  +V E+G         
Sbjct: 1269 DEDEEDMEYDVTLKKLEQHLLDTLTLRGVAGVERAFI--NEKDNVRVMEDGSLFQSKTDP 1326

Query: 1104 --KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAH 1161
              K++ L   G+ L  V+   G+D  +T SN   EV +  GIEAAR  ++ E+ + +   
Sbjct: 1327 LCKEWVLETSGSALADVLTIPGVDTSRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFD 1386

Query: 1162 GMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD 1221
            G  ++ RH+ LL D+MT RG +  +TR GI + D   LM  SFE+T + L  A+  G  D
Sbjct: 1387 GSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELD 1446

Query: 1222 RIEGVSECIIMGIPMPLGTGILKI 1245
               GVSE +I+G   P GTG   +
Sbjct: 1447 DCRGVSENLILGQLAPAGTGEFDV 1470


>gi|294654840|ref|XP_002770038.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
 gi|199429189|emb|CAR65414.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
          Length = 1749

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1283 (33%), Positives = 675/1283 (52%), Gaps = 160/1283 (12%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L P  +L +FK +   DC  L  +E   RPE ++IT + VPP  +RPS+  + +   E+
Sbjct: 206  LLTPSEILSVFKHINSQDCYRLGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGED 265

Query: 142  DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
            D+T +L  +++ N ++Q+  ++ +     S F++L     LQ  VA Y+++D+ G P ++
Sbjct: 266  DLTFKLADVLKANINVQRLEMDGSPQHVISEFEAL-----LQFHVATYMDNDIAGQPQAL 320

Query: 197  Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            Q   RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +AR L+
Sbjct: 321  QKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLS 380

Query: 256  YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
            YPE V+ +NI +L + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+
Sbjct: 381  YPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVE 438

Query: 315  RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
            RHL D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 439  RHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 498

Query: 375  TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
            ++E R E   +  V   + +P++ + ++   QD L     +T +D F  YD+    L   
Sbjct: 499  SQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMLYWI 558

Query: 433  YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
               DG+    +P PAI+ P  LWTGKQL S+ I    +++ +                  
Sbjct: 559  PNWDGV----IPPPAIVSPKPLWTGKQLLSMAIPKGIHLQRF------------------ 596

Query: 493  GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
             D+   +  + P D  +   + E++ G + K T+G     GL   ++R+ G+   +   +
Sbjct: 597  -DDGKNL--LSPKDNGMLVVDGEIMFGVVDKKTVG-ATGGGLIHTVMREKGSQVCAQLFS 652

Query: 553  RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
             + K+   W+ ++GFSIGI D              I +  +     I +    KL+ +PG
Sbjct: 653  SIQKVVNFWLLHNGFSIGIGDTIADSSTMRDVTTTIQDAKDKVQEIILDAQSNKLEPEPG 712

Query: 613  CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
                ++ E  ++ +LN+ R+ AG++   +L   N+   M   GSKGS INISQM ACVGQ
Sbjct: 713  MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 772

Query: 673  QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
            Q V G+R P GF DRSLPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DT
Sbjct: 773  QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 832

Query: 733  AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS----- 787
            AVKTA+TGY+ RRL+KALED+ + YD S RN+ G I+QF+YG+DG+D   +E +S     
Sbjct: 833  AVKTAETGYIQRRLVKALEDIMVHYDGSTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIP 892

Query: 788  GEPLNFDRLLM--------KVKATCPPAGQRYLSPQQVSEIVE---KQLAA---YGKESC 833
            G   +F++            ++ +   +G+      ++ ++++   +QL A   Y ++ C
Sbjct: 893  GSDESFEKRYRIDVLDPSKSIRESLLESGKEIKGDVKLQKVLDEEYRQLEADRRYLRDVC 952

Query: 834  SEAFLN---------SLRKFFEGQQD------------KLDKKIKFVEDIGWD-----DK 867
               F N         +LR+  +  Q             +LD+ ++ V+D+         K
Sbjct: 953  ---FPNGDFNWPLPVNLRRIIQNAQQIFHNGRHKASDLRLDEVVRGVQDLCTKLLVIRGK 1009

Query: 868  SQILEEVTHKTSGITEKQLEVFIQT--CFSRYRVKRVEAGTAIGAIGAQ----------- 914
            + + +E     + + +  L   + T      +++ R+     +G I  Q           
Sbjct: 1010 TALTKEAQENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVHPGEM 1069

Query: 915  -------SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECN 967
                   SIGEP TQMTL TFH+AGV+S N+T GVPR+KEI+N AK I TP +T  LE  
Sbjct: 1070 VGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKE 1129

Query: 968  DNEN--AARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVK 1025
               +   A++V+  IE T L  V  + +I       S VI  D +T++ A+  I  + V+
Sbjct: 1130 SAADIEKAKIVQSAIEHTTLKNVTSATEIFYDPDPRSTVIEEDYDTVE-AYFAIPDEKVE 1188

Query: 1026 ESI-VQTPK-IKLKQQHIKVLDFRKLEIFPPVDKSKIHF--ELYSL-------------- 1067
            ESI  Q+P  ++L+    K+LD ++L +    +K   +F  +L+ +              
Sbjct: 1189 ESIEKQSPWLLRLELDRAKMLD-KQLTMSQVAEKISQNFGEDLFVIWSDDTADKLIIRCR 1247

Query: 1068 ------------------------KNVLPMVIVKGIKTVERVVIAEKEKEKRKVK-ENGE 1102
                                     ++L  + ++GI  + RV + + +     +  E  +
Sbjct: 1248 VVRDPKSLDEDADAEEDQILKRIESHMLESISLRGIPGITRVFMMQHKVNSPDITGEFKQ 1307

Query: 1103 KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHG 1162
             +++ L  +G  L  VM   G+D  +T SN+  EV   LGIEA R  +  EI   +   G
Sbjct: 1308 SQEWVLETDGVNLADVMAVSGVDSSRTYSNNFIEVLSVLGIEATRTALFKEILNVIAFDG 1367

Query: 1163 MSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDR 1222
              ++ RHM LL D+MT RG ++ ITR GI + D   LM  SFE+T + L  A      D 
Sbjct: 1368 SYVNYRHMALLVDVMTSRGHLMAITRHGINRADTGALMRCSFEETVEILLEAGSAAELDD 1427

Query: 1223 IEGVSECIIMGIPMPLGTGILKI 1245
              G+SE +++G   PLGTG   +
Sbjct: 1428 CRGISENVMLGQMAPLGTGAFDV 1450


>gi|383857287|ref|XP_003704136.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Megachile rotundata]
          Length = 1904

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1279 (34%), Positives = 667/1279 (52%), Gaps = 155/1279 (12%)

Query: 94   LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
            + K +TD +  +L +     RP+ +++T + VPP+++RP+VIM GS  N++D+T +L  I
Sbjct: 216  ILKHITDEESFILGMDPKFARPDWMVVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADI 275

Query: 151  IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRL 209
            I+ N  L +      +A       + LQ  VA  +++D+ G+P +MQ + +PL     RL
Sbjct: 276  IKANNELIRNEQAGAAAHVISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARL 335

Query: 210  KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
            KGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ LT+PE V+  NI+K++
Sbjct: 336  KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQ 395

Query: 270  QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLEDGDVVLFNRQ 328
            + ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ DGD+V+FNRQ
Sbjct: 396  ELVRRGNSQYPGAKYIVRDNGERIDL--RFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQ 453

Query: 329  PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGV 388
            P+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R E   +   
Sbjct: 454  PTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 513

Query: 389  QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLPTP 446
               + TP+  + ++   QD LT+   +T++D F ++      LM     DG     +P P
Sbjct: 514  PRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPSWDG----KMPQP 569

Query: 447  AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR--IETMCP 504
             ILKP  LWTGKQ+FS++I  + NM          +T+S     T  DEE     + + P
Sbjct: 570  CILKPKPLWTGKQIFSLIIPGNVNMI---------RTHS-----THPDEEDDGPYKWISP 615

Query: 505  NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
             D  V   + EL+ G L K TLG  +   L  + + + G          +  +   W+  
Sbjct: 616  GDTKVMVEHGELVMGILCKKTLGT-SAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLL 674

Query: 565  HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
             G SIGI D     +   +  K I +  E     I++ +  +L+  PG    QT E  + 
Sbjct: 675  EGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVN 734

Query: 625  DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
             ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P GF
Sbjct: 735  RILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGF 794

Query: 685  IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
              R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKTA+TGY+ R
Sbjct: 795  RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQR 854

Query: 745  RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATC 804
            RLIKA+E + + YD +VRN+ G ++Q  YG+DG+    +E ++   +       + K   
Sbjct: 855  RLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKF 914

Query: 805  PPAGQRYL--------------SPQQVSEIVEKQLAAYGKE-----------------SC 833
             P  +RYL              S + +SE+ E++     K+                  C
Sbjct: 915  DPTNERYLRRIFNEDIVREMMGSGEVISEL-EREWEQLNKDRAILREIFPSGESKVVLPC 973

Query: 834  S-EAFLNSLRKFF----------------EGQQDKLDKKIKFVEDIGWDDKS-------- 868
            + +  + +++K F                +G +D LDK I    D     ++        
Sbjct: 974  NLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLDKCIIVAGDDRLSKQANENATLLF 1033

Query: 869  QILEEVTHKTSGITEK------QLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQ 922
            Q L   T  T  ++E+        E  I    +R++  +V  G  +GA+ AQS+GEP TQ
Sbjct: 1034 QCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQSLGEPATQ 1093

Query: 923  MTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL---ECNDNENAARVVKGR 979
            MTL TFHFAGV+S N+T GVPR+KEIIN +K+   P +T  L      D E A  V+  R
Sbjct: 1094 MTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL-CR 1152

Query: 980  IEKTLLGQVAKSIKIVMTSRLASIVIA----------------------------LDMET 1011
            +E T L +V  +  I       + VIA                            LD + 
Sbjct: 1153 LEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKR 1212

Query: 1012 IQDAHL------------------CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP 1053
            + D  L                  CI  D   E +V   +I +     K  D  +     
Sbjct: 1213 MTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI-MNSDDNKFQDTEEET--- 1268

Query: 1054 PVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KY 1106
             VDK +    L  ++ N+L  + ++GI+ + +V +   + + +K   + E GE K   ++
Sbjct: 1269 -VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIAEW 1327

Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  +GT L  V+    +D  +T SN I E+ Q LGIEA R  +  E+N  ++ +G+ ++
Sbjct: 1328 LLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVN 1387

Query: 1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
             RH+ LL D+MT +G ++ ITR GI + D   LM  SFE+T D L +A+ +   D + GV
Sbjct: 1388 YRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDPMRGV 1447

Query: 1227 SECIIMGIPMPLGTGILKI 1245
            SE IIMG    +GTG   +
Sbjct: 1448 SENIIMGQLPRIGTGCFDL 1466


>gi|326923517|ref|XP_003207982.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like, partial
            [Meleagris gallopavo]
          Length = 641

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/637 (53%), Positives = 449/637 (70%), Gaps = 17/637 (2%)

Query: 621  AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
            A+I   L+ IR+ AG AC+  L   NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R 
Sbjct: 1    ALILKELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRV 60

Query: 681  PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
            P+GF +RSLPHF + +K PAAKGFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TG
Sbjct: 61   PDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETG 120

Query: 741  YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
            YM RRL+K+LEDL  QYD +VR++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +
Sbjct: 121  YMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNI 179

Query: 801  KATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVE 860
            +A  P   +  LS  ++    E  +       C ++FL  ++KF +G  +K+ K     +
Sbjct: 180  RAVYPCRSEPALSKNELVLTSESIMKKNEFLCCRDSFLQEIKKFIKGVSEKIKKT---RD 236

Query: 861  DIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPG 920
              G +D       V ++   IT  QLE F++TC  +Y   ++E G+A+GA+ AQSIGEPG
Sbjct: 237  KYGINDNGTTEPRVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPG 296

Query: 921  TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRI 980
            TQMTLKTFHFAGVASMNIT GVPRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRI
Sbjct: 297  TQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKDDDPDFARLVKGRI 356

Query: 981  EKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQH 1040
            EKTLLG++++ I+ V       I++ L +E I+   L +NA+ V+ SI  + K+++K   
Sbjct: 357  EKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICIS-KLRVKPGD 415

Query: 1041 IKVLDFRKLEIFPPVD-KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKE 1099
            + V     + + P  + KS +++ L SLK  LP V+V+GI  V R VI         + E
Sbjct: 416  VAVHGEAVVCVTPRENSKSSMYYVLQSLKEELPKVVVQGIPEVSRAVI--------HIDE 467

Query: 1100 NGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMK 1159
               K+KY+LLVEG  L+AVM   G+ G KT SN+ +EV++TLGIEAAR  II+EI  TM 
Sbjct: 468  QSGKEKYKLLVEGDNLRAVMATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMV 527

Query: 1160 AHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGR 1219
             HGMSID+RH+MLL+DLMT++GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+
Sbjct: 528  NHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQ 587

Query: 1220 DDRIEGVSECIIMGIPMPLGTGILKIRQ---RDAVPP 1253
             D + GVSECIIMGIPM +GTG+ K+     +++ PP
Sbjct: 588  KDSVCGVSECIIMGIPMNIGTGLFKLLHKADKESTPP 624


>gi|380029407|ref|XP_003698365.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Apis florea]
          Length = 1893

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1279 (34%), Positives = 666/1279 (52%), Gaps = 155/1279 (12%)

Query: 94   LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
            + K +TD +  +L +     RP+ +++T + VPP+++RP+VIM GS  N++D+T +L  I
Sbjct: 216  ILKHITDEESFILGMDPKFARPDWMVVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADI 275

Query: 151  IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRL 209
            I+ N  L +      +A       + LQ  VA  +++D+ G+P +MQ + +PL     RL
Sbjct: 276  IKANNELIRNEQAGAAAHVISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARL 335

Query: 210  KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
            KGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ LT+PE V+  NI+K++
Sbjct: 336  KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQ 395

Query: 270  QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLEDGDVVLFNRQ 328
            + ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ DGD+V+FNRQ
Sbjct: 396  ELVRRGNSQYPGAKYIVRDNGERIDL--RFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQ 453

Query: 329  PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGV 388
            P+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+H PQ+ E R E   +   
Sbjct: 454  PTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHAPQSMETRAEVENIHVT 513

Query: 389  QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLPTP 446
               + TP+  + ++   QD LT+   +T++D F ++      LM     DG     +P P
Sbjct: 514  PRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPSWDG----KMPQP 569

Query: 447  AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR--IETMCP 504
             ILKP  LWTGKQ+FS++I  + NM          +T+S     T  DEE     + + P
Sbjct: 570  CILKPKPLWTGKQIFSLIIPGNVNMI---------RTHS-----THPDEEDDGPYKWISP 615

Query: 505  NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
             D  V   + EL+ G L K TLG  +   L  + + + G          +  +   W+  
Sbjct: 616  GDTKVMVEHGELVMGILCKKTLGT-SAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLL 674

Query: 565  HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
             G SIGI D     +   +  K I +  E     I++ +  +L+  PG    QT E  + 
Sbjct: 675  EGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVN 734

Query: 625  DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
             ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P GF
Sbjct: 735  RILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGF 794

Query: 685  IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
              R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKTA+TGY+ R
Sbjct: 795  RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQR 854

Query: 745  RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATC 804
            RLIKA+E + + YD +VRN+ G ++Q  YG+DG+    +E ++   +       + K   
Sbjct: 855  RLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKF 914

Query: 805  PPAGQRYL--------------SPQQVSEIVEKQLAAYGKE-----------------SC 833
             P  +RYL              S + +SE+ E++     K+                  C
Sbjct: 915  DPTNERYLRRIFNEDIVREMMGSGEVISEL-EREWEQLNKDRAVLREIFPSGESKVVLPC 973

Query: 834  S-EAFLNSLRKFF----------------EGQQDKLDKKIKFVEDIGWDDKS-------- 868
            + +  + +++K F                +G +D LDK I    D     ++        
Sbjct: 974  NLQRMIWNVQKIFHINKRAPTDLSPMKVIQGVKDLLDKCIIVAGDDRLSKQANENATLLF 1033

Query: 869  QILEEVTHKTSGITEK------QLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQ 922
            Q L   T  T  ++E+        E  I    +R++  +V  G  +GA+ AQS+GEP TQ
Sbjct: 1034 QCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQSLGEPATQ 1093

Query: 923  MTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELE---CNDNENAARVVKGR 979
            MTL TFHFAGV+S N+T GVPR+KEIIN +K+   P +T  L      D E A  V+  R
Sbjct: 1094 MTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL-CR 1152

Query: 980  IEKTLLGQVAKSIKIVMTSRLASIVIA----------------------------LDMET 1011
            +E T L +V  +  I       + VIA                            LD + 
Sbjct: 1153 LEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPNKISPWLLRIELDRKR 1212

Query: 1012 IQDAHL------------------CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP 1053
            + D  L                  CI  D   E +V   +I +     K  D  +     
Sbjct: 1213 MTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI-MNSDDNKFQDSEEET--- 1268

Query: 1054 PVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KY 1106
             VDK +    L  ++ N+L  + ++GI+ + +V +   + + +K   + E GE K   ++
Sbjct: 1269 -VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITETGEFKAIAEW 1327

Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  +GT L  V+    +D  +T SN I E+ Q LGIEA R  +  E+N  ++ +G+ ++
Sbjct: 1328 LLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVN 1387

Query: 1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
             RH+ LL D+MT +G ++ ITR GI + D   LM  SFE+T D L +A+ +   D + GV
Sbjct: 1388 YRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDPMRGV 1447

Query: 1227 SECIIMGIPMPLGTGILKI 1245
            SE IIMG    +GTG   +
Sbjct: 1448 SENIIMGQLPRIGTGCFDL 1466


>gi|340722779|ref|XP_003399779.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
            terrestris]
 gi|350424170|ref|XP_003493710.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
            impatiens]
          Length = 1902

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1277 (33%), Positives = 667/1277 (52%), Gaps = 151/1277 (11%)

Query: 94   LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
            + K +TD +  +L +     RP+ +++T + VPP+++RP+VIM GS  N++D+T +L  I
Sbjct: 216  ILKHITDEESFILGMDPKFARPDWMVVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADI 275

Query: 151  IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRL 209
            I+ N  L +      +A       + LQ  VA  +++D+ G+P +MQ + +PL     RL
Sbjct: 276  IKANNELIRNEQAGAAAHVISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARL 335

Query: 210  KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
            KGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ LT+PE V+  NI+K++
Sbjct: 336  KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQ 395

Query: 270  QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLEDGDVVLFNRQ 328
            + ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ DGD+V+FNRQ
Sbjct: 396  ELVRRGNSQYPGAKYIVRDNGERIDL--RFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQ 453

Query: 329  PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGV 388
            P+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R E   +   
Sbjct: 454  PTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 513

Query: 389  QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAI 448
               + TP+  + ++   QD LT+   +T++D F ++     +  ++     +  +P P I
Sbjct: 514  PRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPSWNGK--MPQPCI 571

Query: 449  LKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR--IETMCPND 506
            LKP  LWTGKQ+FS++I  + NM          +T+S     T  DEE     + + P D
Sbjct: 572  LKPKPLWTGKQIFSLIIPGNVNMI---------RTHS-----THPDEEDDGPYKWISPGD 617

Query: 507  GFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHG 566
              V   + EL+ G L K TLG  +   L  + + + G          +  +   W+   G
Sbjct: 618  TKVMVEHGELVMGILCKKTLGT-SAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEG 676

Query: 567  FSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDI 626
             SIGI D     +   +  K I +  E     I++ +  +L+  PG    QT E  +  I
Sbjct: 677  HSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRI 736

Query: 627  LNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFID 686
            LN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P GF  
Sbjct: 737  LNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 796

Query: 687  RSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRL 746
            R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKTA+TGY+ RRL
Sbjct: 797  RTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRL 856

Query: 747  IKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPP 806
            IKA+E + + YD +VRN+ G ++Q  YG+DG+    +E ++   +       + K    P
Sbjct: 857  IKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKFDP 916

Query: 807  AGQRYL--------------SPQQVSEIVEKQLAAYGKE-----------------SCS- 834
              +RYL              S + +SE+ E++     K+                  C+ 
Sbjct: 917  TNERYLRRIFNEDIVREMMGSGEVISEL-EREWEQLNKDRAILREIFPSGESKVVLPCNL 975

Query: 835  EAFLNSLRKFF----------------EGQQDKLDKKIKFVEDIGWDDKS--------QI 870
            +  + +++K F                +G +D LDK I    D     ++        Q 
Sbjct: 976  QRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLDKCIIVAGDDRLSKQANENATLLFQC 1035

Query: 871  LEEVTHKTSGITEK------QLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMT 924
            L   T  T  ++E+        E  I    +R++  +V  G  +GA+ AQS+GEP TQMT
Sbjct: 1036 LVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQSLGEPATQMT 1095

Query: 925  LKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELE---CNDNENAARVVKGRIE 981
            L TFHFAGV+S N+T GVPR+KEIIN +K+   P +T  L      D E A  V+  R+E
Sbjct: 1096 LNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL-CRLE 1154

Query: 982  KTLLGQVAKSIKIVMTSRLASIVIA----------------------------LDMETIQ 1013
             T L +V  +  I       + VIA                            LD + + 
Sbjct: 1155 HTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPNKISPWLLRIELDRKRMT 1214

Query: 1014 DAHL------------------CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPV 1055
            D  L                  CI  D   E +V   +I +     K  D  +      V
Sbjct: 1215 DKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI-MNSDDNKFQDSEEET----V 1269

Query: 1056 DKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRL 1108
            DK +    L  ++ N+L  + ++GI+ + +V +   + + +K   + E GE K   ++ L
Sbjct: 1270 DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITETGEFKAIAEWLL 1329

Query: 1109 LVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKR 1168
              +GT L  V+    +D  +T SN I E+ + LGIEA R  +  E+N  ++ +G+ ++ R
Sbjct: 1330 ETDGTSLMKVLSERDVDPVRTFSNDICEIFEVLGIEAVRKSVEKEMNAVLQFYGLYVNYR 1389

Query: 1169 HMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSE 1228
            H+ LL D+MT +G ++ ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE
Sbjct: 1390 HLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSE 1449

Query: 1229 CIIMGIPMPLGTGILKI 1245
             IIMG    +GTG   +
Sbjct: 1450 NIIMGQLPRIGTGCFDL 1466


>gi|324120572|dbj|BAJ78677.1| RNA polymerase II largest subunit [Vespa analis insularis]
          Length = 1708

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1281 (34%), Positives = 663/1281 (51%), Gaps = 159/1281 (12%)

Query: 94   LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
            + K +TD +  +L +     RP+ +++T + VPP+++RP+VIM GS  N++D+T +L  I
Sbjct: 216  ILKHITDEESFILGMDPKFARPDWMVVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADI 275

Query: 151  IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRL 209
            I++N  L +      +A       + LQ  VA  +++D+ G+P +MQ + +PL     RL
Sbjct: 276  IKSNNELLRNEQAGAAAHVISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARL 335

Query: 210  KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
            KGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ LT+PE V+  NI+K++
Sbjct: 336  KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQ 395

Query: 270  QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLEDGDVVLFNRQ 328
            + ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ DGD+V+FNRQ
Sbjct: 396  ELVRRGNSQYPGAKYIVRDNGERIDL--RFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQ 453

Query: 329  PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGV 388
            P+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R E   +   
Sbjct: 454  PTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 513

Query: 389  QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLPTP 446
               + TP+  + ++   QD LT+   +T++D F ++      LM     DG     +P P
Sbjct: 514  PRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPSWDG----KMPQP 569

Query: 447  AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR--IETMCP 504
             ILKP  LWTGKQ+FS++I  + NM          +T+S     T  DEE     + + P
Sbjct: 570  CILKPKPLWTGKQIFSLIIPGNVNMI---------RTHS-----THPDEEDDGPYKWISP 615

Query: 505  NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
             D  V   + EL+ G L K TLG  +   L  + + + G          +  +   W+  
Sbjct: 616  GDTKVMVEHGELVMGILCKKTLGT-SAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLL 674

Query: 565  HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
             G SIGI D     +   +  K I +  E     I++ +  +L+  PG    QT E  + 
Sbjct: 675  EGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVN 734

Query: 625  DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
             ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P GF
Sbjct: 735  RILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGF 794

Query: 685  IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
              R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKTA+TGY+ R
Sbjct: 795  RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQR 854

Query: 745  RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM-------------------------- 778
            RLIKA+E + + YD +VRN+ G ++Q  YG+DG+                          
Sbjct: 855  RLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKF 914

Query: 779  DPAN---------------MEG---------KSGEPLNFDRLLMKVKATCPPAGQRYLSP 814
            DP N               M G         +  E LN DR +++     P    + + P
Sbjct: 915  DPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNRDRAVLR--EIFPSGESKVVLP 972

Query: 815  QQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKS------ 868
              +  ++      +     +   L+ +R   +G +D L+K I    D     ++      
Sbjct: 973  CNLQRMIWNVQKIFHINKRAPTDLSPMR-VIQGVKDLLEKCIIVAGDDRLSKQANENATL 1031

Query: 869  --QILEEVTHKTSGITEK------QLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPG 920
              Q L   T  T  ++E+        E  I    +R++  +V  G  +GA+ AQS+GEP 
Sbjct: 1032 LFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQSLGEPA 1091

Query: 921  TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELE---CNDNENAARVVK 977
            TQMTL TFHFAGV+S N+T GVPR+KEIIN +K+   P +T  L      D E A  V+ 
Sbjct: 1092 TQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL- 1150

Query: 978  GRIEKTLLGQVAKSIKIVMTSRLASIVIA----------------------------LDM 1009
             R+E T L +V  +  I       + VIA                            LD 
Sbjct: 1151 CRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLLRIELDR 1210

Query: 1010 ETIQDAHL------------------CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEI 1051
            + + D  L                  CI  D   E +V   +I +     K  D  +   
Sbjct: 1211 KRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI-MNSDDNKFQDTEEET- 1268

Query: 1052 FPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK--- 1104
               VDK +    L  ++ N+L  + ++GI+ + +V +   + + +K   + E GE K   
Sbjct: 1269 ---VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIA 1325

Query: 1105 KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMS 1164
            ++ L  +GT L  V+    +D  +T SN I E+ Q LGIEA R  +  E+N  ++ +G+ 
Sbjct: 1326 EWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1385

Query: 1165 IDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIE 1224
            ++ RH+ LL D+MT +G ++ ITR GI + D   LM  SFE+T D L +A+ +   D + 
Sbjct: 1386 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDPMR 1445

Query: 1225 GVSECIIMGIPMPLGTGILKI 1245
            GVSE IIMG    +GTG   +
Sbjct: 1446 GVSENIIMGQLPRIGTGCFDL 1466


>gi|324120558|dbj|BAJ78670.1| RNA polymerase II largest subunit [Gynaikothrips ficorum]
          Length = 1687

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1282 (34%), Positives = 667/1282 (52%), Gaps = 156/1282 (12%)

Query: 91   VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
            V  + K + D +C +L +     RP+ +I+T + VPP+ +RP+V+M GS  N++D+T +L
Sbjct: 215  VWEILKHIIDEECFILGMDPKYARPDWMIVTVLPVPPLCVRPAVVMYGSARNQDDLTHKL 274

Query: 148  KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
              I++ N  L +      +A       + LQ  VA  +++D+ G+P +MQ + +PL    
Sbjct: 275  ADILKANNELVRNEQAGTAAHVLAENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIK 334

Query: 207  QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
             RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ +T+PE V+  N++
Sbjct: 335  ARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMD 394

Query: 267  KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLEDGDVVLF 325
            K+++ ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ DGD+V+F
Sbjct: 395  KMQELVRRGNSQYPGAKYIVRDNGERIDL--RFHPKPSDLHLQCGYKVERHIRDGDLVIF 452

Query: 326  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
            NRQP+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R E   +
Sbjct: 453  NRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENI 512

Query: 386  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDL 443
                  + TP+  + ++   QD LT+   +T++D F ++      LM   + DG     +
Sbjct: 513  HVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMTLLMFLPIWDG----KM 568

Query: 444  PTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMC 503
            P P ILKP  LWTGKQ+FS++I  + NM          +T+S      + ++E   + + 
Sbjct: 569  PQPCILKPKPLWTGKQIFSLIIPGNVNMI---------RTHST---HPDDEDEGPYKWIS 616

Query: 504  PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIG 563
            P D  V   + ELI G L K TLG      L+ + L + G          +  +   W+ 
Sbjct: 617  PGDTKVMVEHGELIKGILCKKTLGTSAGSLLHIIFL-ELGHEVCGQFYGNIQTVVNNWLL 675

Query: 564  NHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
              G SIGI D     +   +  K I +  E     I++ +  +L+  PG    QT E  +
Sbjct: 676  LEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQV 735

Query: 624  TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
              ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P G
Sbjct: 736  NRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFG 795

Query: 684  FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
            F  R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKTA+TGY+ 
Sbjct: 796  FRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQ 855

Query: 744  RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKAT 803
            RRLIKA+E + + YD++VRN+ G ++Q  YG+DG+    +E +S   +       + K  
Sbjct: 856  RRLIKAMESVMVNYDSTVRNSVGQLIQLRYGEDGLCGETVEFQSLSTVKLSNKQFERKFK 915

Query: 804  CPPAGQRYLSPQQVSEIVEKQLAAYG----------KESCSEAFLNSLRKFFEGQQDK-- 851
              P   R L  +  +E V K+L   G          ++ C +  +  LR+ F   ++K  
Sbjct: 916  FDPTNDRNLR-RVFNEEVIKELMGSGDVVQELDNEWEQLCRDREI--LRQIFPSGENKVV 972

Query: 852  -----------------LDKK----------IKFVEDI--------GWDDKS-------- 868
                             ++K+          IK V+D+        G D  S        
Sbjct: 973  LPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIKGVKDLLEKCVIVAGDDHLSKMANENAT 1032

Query: 869  ---QILEEVTHKTSGITEK------QLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEP 919
               Q L   T  T  ++E+        E  I    +R++  +   G  +GA+ AQS+GEP
Sbjct: 1033 LLFQCLVRSTLCTKSVSEEFRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEP 1092

Query: 920  GTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELE---CNDNENAARVV 976
             TQMTL TFHFAGV+S N+T GVPR+KEIIN +K+   P +T  L      D E A  V+
Sbjct: 1093 ATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL 1152

Query: 977  KGRIEKTLLGQVAKSIKIVMTSRLASIVIA----------------------------LD 1008
              R+E T L +V  +  I       + VI                             LD
Sbjct: 1153 -CRLEHTTLRKVTANTAIYYDPDPQNTVIKDDQEFVNVYYEMPDFDPTRISPWLLRIELD 1211

Query: 1009 METIQDAHL------------------CINADIVKESIVQTPKIKLKQQHIKVLDFRKLE 1050
             + + D  L                  CI  D   E +V   +I +     K  D  +  
Sbjct: 1212 RKRMTDKKLTMEQIAEKINAGFGEDLNCIFNDDNAEKLVLRIRI-MNSDDNKFQDEEEQ- 1269

Query: 1051 IFPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK-- 1104
                VDK +    L  ++ N+L  + ++GI+ + +V +   + + +K   + E GE K  
Sbjct: 1270 ----VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAI 1325

Query: 1105 -KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGM 1163
             ++ L  +GT L  V+    +D  +T SN I E+ Q LGIEA R  +  E+N  ++ +G+
Sbjct: 1326 AEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1385

Query: 1164 SIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRI 1223
             ++ RH+ LL D+MT +G ++ ITR GI + D   LM  SFE+T D L +A+ +   D +
Sbjct: 1386 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDPM 1445

Query: 1224 EGVSECIIMGIPMPLGTGILKI 1245
             GVSE IIMG    +GTG   +
Sbjct: 1446 RGVSENIIMGQLPRMGTGCFDL 1467


>gi|429962270|gb|ELA41814.1| hypothetical protein VICG_01166 [Vittaforma corneae ATCC 50505]
          Length = 1569

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1270 (34%), Positives = 668/1270 (52%), Gaps = 145/1270 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +LN   V  + K++   D   L       RPE +++T I VPP A+RPS++++G    E+
Sbjct: 172  VLNGERVYNILKKIPTEDSMFLGFDPDNCRPEWMMLTTIIVPPPAMRPSIVLNGHLRAED 231

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQV-AR 200
            D+T +L  I++ NA L++   E   +       + LQ  +A  +++D+ G P ++Q   R
Sbjct: 232  DLTHKLADIVKANAYLKKYEQEGAPSHIVRDYEQLLQFHLATLVDNDIGGQPQALQKNGR 291

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            PL     RLKGK+GR RGNL GKRV+++ R+VISPDP + + +V +PI +A+I T+PE+V
Sbjct: 292  PLKSITARLKGKEGRIRGNLMGKRVDFSARSVISPDPLISVGQVGVPISIAKIHTFPEKV 351

Query: 261  SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
            +  NI+ L++ +  GP+++PGA  +   DG    L   F N+  ++L++G  V+RH++D 
Sbjct: 352  NSFNIDYLQKLVNRGPNEHPGANYVIRSDGQRIDL--NF-NRFDLKLENGFTVERHMQDN 408

Query: 321  DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
            D VLFNRQPSLH+MS+M HR ++M  ++ R N S  +PYNADFDGDEMN+H+PQ+   + 
Sbjct: 409  DEVLFNRQPSLHKMSMMGHRVKVMSGKSFRLNLSATSPYNADFDGDEMNLHMPQSYATKA 468

Query: 381  EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYD-RAAFSLMCCYMGDGM- 438
            E  LL  V   + +P++ + ++   QD L  S L+T +D F++ R A +L+  +   G  
Sbjct: 469  ELGLLTAVDKQIVSPQSNKPVIGIVQDTLVGSRLLTVRDAFFNKREAMNLLYSFNSFGKK 528

Query: 439  --DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
              D +D   P IL+PVELWTGKQLFS ++     MR   N  + E       +  +G   
Sbjct: 529  NEDFLDYLRPTILQPVELWTGKQLFSAILPRIFYMRD-SNADISE-------MDNKGWNS 580

Query: 497  IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
            I +      D     RN  L++G + K ++G   + GL  ++  DYG+ A    ++ + +
Sbjct: 581  INL-----TDSTAIIRNGVLLAGPIDKKSVG-AQQGGLIHIIFNDYGSEAAKNFIDNIQR 634

Query: 557  LSARWIGN-HGFSIGIDD-VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
            +   ++ +   FS+GI D V   + L+  K  +     EV  + I    + +L+  PG  
Sbjct: 635  IVTHFLLHISSFSVGIGDCVADNRTLTLCKSAVKRAMSEVDEI-IALTKKNELEKMPGMT 693

Query: 615  AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
             ++T E+ +  ILN+ R  +G +   SL   N    M   GSKGS INISQ++ C+GQQ+
Sbjct: 694  LSETFESRVNVILNKARNISGTSAQNSLNSCNYMKAMVLSGSKGSYINISQIITCLGQQN 753

Query: 675  VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
            V G+R P GF +RSLPHF +      ++GFV NS+ SG+   EFFFH MGGREG++DTA+
Sbjct: 754  VEGKRIPFGFFERSLPHFYKYDFSAKSRGFVQNSYLSGMDPDEFFFHAMGGREGIIDTAI 813

Query: 735  KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME---------- 784
            KTA+TGY+ RRL+KALED  + +D SVRN  G I QF YGDDG D   +E          
Sbjct: 814  KTAETGYIQRRLVKALEDAIVHHDFSVRNGRGDIYQFSYGDDGFDATYLENVVVPIDNFK 873

Query: 785  --------GKSG-----------------EPLNFDRLLMK----VKATCPPAGQRYLSPQ 815
                    G                    + ++  +LL K    + A        Y SP 
Sbjct: 874  ERYFIDMFGDDSHAIFPHQVSTDVYQLLRDDIDLQKLLDKEYEYLYANRNLLKDSYPSPV 933

Query: 816  QVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQD-----KLDKKIKFV-EDIGWDDKSQ 869
             +S I+ K      +       LNS      G +      +L   +KFV  ++   D + 
Sbjct: 934  NISRILSKYKKTTIESISPYTILNSFNSIMTGNKRLDYYIRLSLNVKFVLLNLSPADFNA 993

Query: 870  ILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFH 929
            +L E+  K                    R K V A   +G + AQS+GEP TQMTL TFH
Sbjct: 994  VLSEIKTKI------------------LRAK-VNANEMVGTLAAQSVGEPATQMTLNTFH 1034

Query: 930  FAGVASMNITQGVPRIKEIINGAKRISTPIITAELE---CNDNENAARVVKGRIEKTLLG 986
             AGVAS  +T GVPR+ EIIN AK I TP +   L      D ENA R V+ +IE   L 
Sbjct: 1035 LAGVAS-TVTMGVPRLNEIINLAKSIKTPSMQIFLNKPLGTDIENARR-VQNQIEFLSLK 1092

Query: 987  QVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADI-------------VKESIVQTPK 1033
             V +  +I+   ++ +  I  D E ++      + DI             +  S + T  
Sbjct: 1093 MVCEMSQILYDPKIRTTSIGDDREFVETYFEMPDEDIDFDLLSKFVIRLVISRSSMVTRG 1152

Query: 1034 IKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVI-VKGIKTVERVV--IAEK 1090
            + L+    K+   RKL        S IH  + S +N   +VI  +   + E  +  + E 
Sbjct: 1153 LTLEFISSKI---RKLY------GSGIHI-ITSDENDERLVIRARFFASSEETLSSLKEA 1202

Query: 1091 EKEKRKVKENG---------------EKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + E  K+   G               +K ++ L  +G    +V+ A  IDG +  +N I+
Sbjct: 1203 QAEILKIHLQGHTQIKKAYLTNLNKLDKSEWCLQTDGIDFLSVLSAPNIDGTRVMANDIY 1262

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMS-IDKRHMMLLADLMTFRGEVLGITRFGIQKM 1194
             +   LG+EAAR  I++E++  ++ +G S ++ RHM LLAD+MT +G + GITR G+ + 
Sbjct: 1263 VIYSVLGVEAARQSILNELSLVIEDNGSSYVNHRHMSLLADVMTVKGYLTGITRHGVSRQ 1322

Query: 1195 DKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG----ILKIRQRDA 1250
              SVL  ASFE+T D L +A+ N   D ++GVSE I++G   P+GTG    +L I++ + 
Sbjct: 1323 SASVLKRASFEETVDVLLDAAANSELDAVKGVSENIMLGQLPPVGTGNVDIVLDIKKIEH 1382

Query: 1251 VPPMLKYGAP 1260
            + P  +Y +P
Sbjct: 1383 IIP--RYVSP 1390


>gi|307198840|gb|EFN79616.1| DNA-directed RNA polymerase II subunit RPB1 [Harpegnathos saltator]
          Length = 1906

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1280 (33%), Positives = 659/1280 (51%), Gaps = 157/1280 (12%)

Query: 94   LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
            + K + D +  +L +     RP+ +I+T + VPP+++RP+VIM GS  N++D+T +L  I
Sbjct: 217  ILKHIKDEESFILGMDPKFARPDWMIVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADI 276

Query: 151  IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRL 209
            I++N  L +      +A       + LQ   A  +++D+ G+P +MQ + +PL     RL
Sbjct: 277  IKSNNELLRNEQSGAAAHVISENIKMLQFHAATLVDNDMPGMPRAMQKSGKPLKAIKARL 336

Query: 210  KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
            KGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ LT+PE V+  NI+K++
Sbjct: 337  KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQ 396

Query: 270  QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQP 329
              ++ G  +YPGA+ I   +G  R+          + L+ G  V+RH+ DGD+V+FNRQP
Sbjct: 397  VLVRRGNSQYPGAKYIVRDNG-ERIDLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQP 455

Query: 330  SLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQ 389
            +LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R E   +    
Sbjct: 456  TLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTP 515

Query: 390  NNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLPTPA 447
              + TP+  + ++   QD LT+   +T++D F ++      LM     DG     +P P 
Sbjct: 516  RQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNLLMFLPSWDG----KMPQPC 571

Query: 448  ILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR--IETMCPN 505
            ILKP  +WTGKQLFS++I  + NM          +T+S     T  DEE     + + P 
Sbjct: 572  ILKPKPMWTGKQLFSLIIPGNVNMI---------RTHS-----THPDEEDDGPYKWISPG 617

Query: 506  DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
            D  V   + EL+ G L K TLG  +   L  + + + G          +  +   W+   
Sbjct: 618  DTKVMVEHGELVMGILCKKTLGT-SAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLE 676

Query: 566  GFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITD 625
            G SIGI D     +   +  K I +  E     I++ +  +L+  PG    QT E  +  
Sbjct: 677  GHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNR 736

Query: 626  ILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFI 685
            ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P GF 
Sbjct: 737  ILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 796

Query: 686  DRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRR 745
             R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKTA+TGY+ RR
Sbjct: 797  KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRR 856

Query: 746  LIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM--------------------------D 779
            LIKA+E + + YD +VRN+ G ++Q  YG+DG+                          D
Sbjct: 857  LIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKVSNKAFEKKFKFD 916

Query: 780  PAN---------------MEG---------KSGEPLNFDRLLMKVKATCPPAGQRYLSPQ 815
            P N               M G         +  E LN DR +++     P    + + P 
Sbjct: 917  PTNERYLRRIFNEEIVREMMGSGEVISELEREWEQLNRDRTVLR--EIFPSGESKVVLPC 974

Query: 816  QVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDD--------- 866
             +  ++      +     +   L+ +R   +G +D LDK I    D              
Sbjct: 975  NLQRMIWNVQKIFHINKRAPTDLSPMR-VIQGVKDLLDKCIIVAGDDRLSKQANENATLL 1033

Query: 867  -----KSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGT 921
                 +S +  +   +   ++ +  E  I    +R++  +V  G  +GA+ AQS+GEP T
Sbjct: 1034 FRCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQSLGEPAT 1093

Query: 922  QMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELE---CNDNENAARVVKG 978
            QMTL TFHFAGV+S N+T GVPR+KEIIN +K+   P +T  L      D E A  V+  
Sbjct: 1094 QMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL-C 1152

Query: 979  RIEKTLLGQVAKSIKIVMTSRLASIVIA----------------------------LDME 1010
            R+E T L +V  +  I       + VIA                            LD +
Sbjct: 1153 RLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLLRIELDRK 1212

Query: 1011 TIQDAHL------------------CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIF 1052
             + D  L                  CI  D   E +V    ++++  +     F++ +  
Sbjct: 1213 RMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLV----LRIRIMNSDDNKFQETD-E 1267

Query: 1053 PPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---K 1105
             P+DK +    L  ++ N+L  + ++GI+ + +V +   + + +K   + E GE K   +
Sbjct: 1268 EPMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITETGEFKAIAE 1327

Query: 1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
            + L  +GT L  V+    +D  +T SN I E+ Q LGIEA R  +  E+N  ++ +G+ +
Sbjct: 1328 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYV 1387

Query: 1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
            + RH+ LL D+MT +G ++ ITR GI + D   LM  SFE+T D L +A+ +   D + G
Sbjct: 1388 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDPMRG 1447

Query: 1226 VSECIIMGIPMPLGTGILKI 1245
            VSE IIMG    +GTG   +
Sbjct: 1448 VSENIIMGQLPRIGTGCFDL 1467


>gi|212533501|ref|XP_002146907.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Talaromyces marneffei ATCC 18224]
 gi|210072271|gb|EEA26360.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Talaromyces marneffei ATCC 18224]
          Length = 1744

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1284 (34%), Positives = 649/1284 (50%), Gaps = 153/1284 (11%)

Query: 86   LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNI---AVPPIAIRPSVIMDGSQSN 139
            + P     +F+ ++  D  ++ LS    RPE +I+T +            S      Q  
Sbjct: 216  ITPSMAYNIFRSISHEDVRIMGLSNDYARPEWMILTVLIVPPPVVRPSVVSGKSSSGQRA 275

Query: 140  ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA 199
            E+D+T +L  II+ N +LQ+   E             LQ  VA Y+++D+ G P +M  +
Sbjct: 276  EDDLTFKLAEIIRANQNLQRCEQEGAPEHVVREFEALLQYHVATYMDNDIAGQPKAMTKS 335

Query: 200  -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
             RP+     RLKGK+GR R NL GKRV+++ RTVI  DPNL + EV  P   A ILTYPE
Sbjct: 336  NRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVICGDPNLSLEEVGTPRSTAMILTYPE 395

Query: 259  RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
             V+ +NIE L++ + NGP  YPGAR I   +G    L  +   +    L  G  V+RHL 
Sbjct: 396  VVTPYNIEFLQKLVNNGPTIYPGARYIVRDNGERIDL--RMARKTNANLLYGWKVERHLL 453

Query: 319  DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
            DGDV+LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMNMHVPQ+EEA
Sbjct: 454  DGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQSEEA 513

Query: 379  RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
            R E L L  V NN+ +P+    L+   QD L   + I R+D F  +     +  ++ D  
Sbjct: 514  RAELLQLALVPNNIVSPQRNGPLMGIVQDSLCGIYKICRRDVFLTKDQVMNLMLWVPD-W 572

Query: 439  DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            D V +P PAI+KP   WTGKQ+ S+++    N                 L+R + D+   
Sbjct: 573  DGV-IPQPAIIKPRPRWTGKQIISMVLPSGLN-----------------LLRVDKDKAPL 614

Query: 499  IETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
             E   P  DG +     +L+ G   K T+G  +  G+   +  +YG  A     N   ++
Sbjct: 615  SEKFSPLTDGGILVHGGQLMYGMFSKKTVG-ASGGGVVHTIFNEYGPEAAVSFFNGAQRV 673

Query: 558  SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
               W+ ++GFSIGI D  P K+  ++    +          ++   E  L+  PG +  +
Sbjct: 674  VNYWLLHNGFSIGIGDTIPDKKTIERIEDAVRAGKAEVEEIVQSATENTLEALPGMNIRE 733

Query: 618  TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
            T E+ ++  LN  RE AG     SL   N+ + M++ GSKGS INISQM A VGQQSV G
Sbjct: 734  TFESKVSRALNNAREAAGSETEKSLKDLNNAIQMARSGSKGSAINISQMTAIVGQQSVEG 793

Query: 678  RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            +R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA
Sbjct: 794  KRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTA 853

Query: 738  DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEG------KSGEPL 791
            +TGY+ R+L+KALE+L ++YD +VRN+ G I+QFLYG+DG+D A++E       K  +  
Sbjct: 854  ETGYIQRKLVKALEELMVKYDGTVRNSLGDIIQFLYGEDGLDGAHIENQRVDIIKCSDEQ 913

Query: 792  NFDRL---LMKVKATCPP---------AG----QRYLSPQQVSEIVEKQLA---AYGKES 832
              DR    LM  + T  P         +G    QRY   +  + + +++     A G E 
Sbjct: 914  FRDRFRVDLMDPERTLGPEVLEQAAEISGDVEVQRYFDEEWDALVKDREFLRSIAKGDEE 973

Query: 833  CSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVT----------------- 875
              +  LN +++  E  +     K   + D+     ++++ +V                  
Sbjct: 974  MMQLPLN-VQRILESAKTTFHIKEGTISDL---HPAEVIPQVQALLDRLVVVRGDDVISK 1029

Query: 876  -HKTSGITEKQLEVFIQTCFSR----YRVKRVEAGTAIGAIG---AQSIGEPG------- 920
              +TS     + ++  +  F R    Y + ++     +GAI    AQ+   PG       
Sbjct: 1030 EAQTSATLLFKAQLRSRLAFKRLVTQYSMNKLAFKHVLGAIEMRFAQAQANPGEMVGVLA 1089

Query: 921  --------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECN--DNE 970
                    TQMTL TFHFAGV+S N+T GVPR+KE++N A  I TP +T   E +   ++
Sbjct: 1090 AQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKELLNVATNIKTPSMTVYQESHRKHDK 1149

Query: 971  NAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKES--- 1027
             AA+ ++  +E T L  V ++ +I     + S VI  D + ++ ++  I  D+  +S   
Sbjct: 1150 EAAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTVIDNDRDMVE-SYFIIPEDVTDDSSRQ 1208

Query: 1028 -------------------IVQTPKIKLKQQHIK--------------VLDFRKLEIFPP 1054
                                VQ    ++KQQ+ +              V+  R+L     
Sbjct: 1209 SKWLLRIVLNRAKLLDKGLTVQDVATRIKQQYPRDIAVIFSDNNADEQVIRIRQLHDAKE 1268

Query: 1055 VDKSKIHFELYSLK----NVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEK------- 1103
             +  +      +LK    ++L  + ++G+  VER  I   EK+  ++ ++G         
Sbjct: 1269 DEDEEDMEYDVTLKKLEQHLLDTLTLRGVSGVERAFI--NEKDNARLMDDGSLFLSKADP 1326

Query: 1104 --KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAH 1161
              K++ L   GT L  V+   G+D  +T SN   EV +  GIEAAR  ++ E+ + +   
Sbjct: 1327 LCKEWVLETSGTALADVLTIPGVDTTRTYSNQFIEVFEVFGIEAARSALLRELTQVLAFD 1386

Query: 1162 GMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD 1221
            G  ++ RH+ LL D+MT RG +  +TR GI + D   LM  SFE+T + L  A+  G  D
Sbjct: 1387 GSYVNHRHLALLVDIMTVRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELD 1446

Query: 1222 RIEGVSECIIMGIPMPLGTGILKI 1245
               GVSE +I+G   P GTG   +
Sbjct: 1447 DCRGVSENLILGQLAPAGTGEFDV 1470


>gi|389631979|ref|XP_003713642.1| DNA-directed RNA polymerase II largest subunit [Magnaporthe oryzae
            70-15]
 gi|351645975|gb|EHA53835.1| DNA-directed RNA polymerase II largest subunit [Magnaporthe oryzae
            70-15]
          Length = 1757

 Score =  640 bits (1650), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 434/1313 (33%), Positives = 671/1313 (51%), Gaps = 162/1313 (12%)

Query: 60   ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLI 116
            ++LQ +A  +   +E      V   ++ P     + K + + D   + L++   RPE LI
Sbjct: 188  KALQLYAK-VEEAREEGMKKEVKDKLITPEQAHHILKHIPEDDLWKMGLNKDYARPEWLI 246

Query: 117  ITNIAVPPIAIRPSVIMDGSQS---NENDITERLKRIIQTNASLQQELVEANSAFKSLAG 173
            +T + VPP  +RPS+ +DG+     +E+D+T +L  II+ N +++Q   E          
Sbjct: 247  VTVLPVPPPPVRPSISVDGTSQGMRSEDDLTYKLGDIIRANGNVKQAHAEGAPNHICTEF 306

Query: 174  WETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTV 232
             E LQ  VA Y+++D+  +P S+Q   RP+     RLKGK+GR RGNL GKRV+++ RTV
Sbjct: 307  EELLQYHVATYMDNDIASIPRSLQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTV 366

Query: 233  ISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA 292
            I+ D N+ + EV +P  +AR LTYPE V+ HNI++L Q + NGP+++PGA+ I   DGT 
Sbjct: 367  ITGDANISLHEVGVPRSIARTLTYPETVTPHNIDRLHQYVVNGPNEHPGAKYIVRTDGT- 425

Query: 293  RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 352
            R+     +N+ + +L+ G  V+RHL  GD ++FNRQPSLH+ S+M H+ R+MP+ T R N
Sbjct: 426  RIDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNRQPSLHKESMMGHQVRVMPYSTFRLN 485

Query: 353  ESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSS 412
             SV +PYNADFDGDEMN+HVPQTEE R E   L  V  N+ +P+    L+   QD L  +
Sbjct: 486  LSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNSPLMGIVQDTLAGT 545

Query: 413  FLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMR 472
            + + R+D F  + A   +  ++ D  D + +P PAIL+P   WTGKQ+ S++I       
Sbjct: 546  YKLCRRDVFLTKEAVMDIMLWVPD-WDGI-IPQPAILRPRPRWTGKQIISMVIPDF---- 599

Query: 473  VYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKD 532
                +T  +    N L                ND  +  ++ EL+ G L K  +G  +  
Sbjct: 600  ----VTTHQGGDWNPL----------------NDDALLIQSGELMFGLLTKKNVGAASG- 638

Query: 533  GLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENY 592
            G+  +   + G       +N   ++   W+ ++G SIGI D  P     +K    I+E  
Sbjct: 639  GIIHICYNEQGPARAMAFLNGCQRVVNYWLLHNGHSIGIGDTIPDPVTIEKIQAHINEQK 698

Query: 593  EVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMS 652
                         +L+  PG +  +T E+ ++  LN  RE AG     SL   N+ + MS
Sbjct: 699  AEVAELTDLATTNRLEALPGMNIRETFESKVSKALNTAREKAGTTTEKSLKDINNAVTMS 758

Query: 653  QCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSG 712
            + GSKGS INISQM A VGQQ V G+R P GF  R+LPHF +    P A+GFV NS+  G
Sbjct: 759  RSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDFSPEARGFVENSYLRG 818

Query: 713  LSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFL 772
            L+ +EFFFH M GREGL+DTAVKTA+TGY+ RRL+KALED++ +YD +VRN+ G I+QF+
Sbjct: 819  LTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVAAKYDGTVRNSLGDIIQFI 878

Query: 773  YGDDGMDPANMEGKSGEPLN-----FDRL--LMKVKATCP---------------PAGQR 810
            YG+DG+D   +E +  + LN     FD +  L  + AT P               PA Q+
Sbjct: 879  YGEDGLDGMAIEKQKMDHLNISNGKFDGMYKLDLMTATRPRELNALEYGNEIFGDPAVQQ 938

Query: 811  YLS----------------------------PQQVSEIVEKQLAAYGKESCSEAFLNS-- 840
             L                             P  V+ ++E     +  +    + L    
Sbjct: 939  LLDEEYDAIKADRQLIREINYKKKDDNDMQLPLNVARVIENAKKLFKIDDAQRSDLKPQD 998

Query: 841  ----LRKFFEGQ-----QDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEK----QLE 887
                ++ F E        D + K+  +   I +  K+Q+   +  K   + E+      +
Sbjct: 999  VIPVVKGFLERMVVVPGDDPISKEANYNSSILF--KAQLRSRLAFKRLAVRERLNRIAFD 1056

Query: 888  VFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKE 947
              I    SR++   V  G  +G + AQSIGEP TQMTL TFHF G++S N+T GVPR+KE
Sbjct: 1057 HVIGEMESRWQRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFTGISSKNVTLGVPRLKE 1116

Query: 948  IINGAKRISTPIITAELE----CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASI 1003
            I+N +  I TP +   L+     +  +  A+ ++  +E T L  V    +I     + + 
Sbjct: 1117 ILNVSAEIKTPGMVVRLDPKMYPDFKQENAKTLRSLVEHTNLRSVTAMTEIYYDPEIQTT 1176

Query: 1004 VIALDMETIQDAHLCINADIVKESIVQT----------PKIKLKQQHI------------ 1041
             I  D + ++  H  I  +   E   Q+           K+  K  HI            
Sbjct: 1177 TIDEDADMLE-GHYLIPEEHQDEPSNQSRWLLRLTLDRQKMLDKNLHIEDVAASIKGAYA 1235

Query: 1042 --------------KVLDFRKLEIFPPVDKSKIHFELYSL-----KNVLPMVIVKGIKTV 1082
                          +V+  R +      DK   + E   +     +++L  + ++GIK +
Sbjct: 1236 SDLVVVHSDNNADEQVIRMRHVIKGDEEDKDGRNIESDQILKRLEEHMLDGLTLRGIKGI 1295

Query: 1083 ERVVIAEKEKEKRKV----------KENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSN 1132
            ER  +    K+ R V          K+  E +++ L  +GT L+ V+  +G+D  +T +N
Sbjct: 1296 ERAFL---NKDTRLVVKPDGSLLNSKDAPECEEWYLDTQGTSLRQVLCVDGVDSVRTLTN 1352

Query: 1133 HIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQ 1192
             ++++   LGIEAAR  ++ E+ + +   G  ++ RH+ LL D+MT+RG +  +TR GI 
Sbjct: 1353 DLYQIVDLLGIEAARTALLGELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGIN 1412

Query: 1193 KMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            + D   LM  SFE+T + L  A+  G  D   G+SE +++G   P+GTG  ++
Sbjct: 1413 RADTGALMRCSFEETVEILLEAAAIGELDDCRGISENVMLGQLAPMGTGAFEV 1465


>gi|440467914|gb|ELQ37108.1| DNA-directed RNA polymerase II subunit RPB1 [Magnaporthe oryzae Y34]
 gi|440478660|gb|ELQ59479.1| DNA-directed RNA polymerase II subunit RPB1 [Magnaporthe oryzae P131]
          Length = 1745

 Score =  640 bits (1650), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 434/1313 (33%), Positives = 671/1313 (51%), Gaps = 162/1313 (12%)

Query: 60   ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLI 116
            ++LQ +A  +   +E      V   ++ P     + K + + D   + L++   RPE LI
Sbjct: 176  KALQLYAK-VEEAREEGMKKEVKDKLITPEQAHHILKHIPEDDLWKMGLNKDYARPEWLI 234

Query: 117  ITNIAVPPIAIRPSVIMDGSQS---NENDITERLKRIIQTNASLQQELVEANSAFKSLAG 173
            +T + VPP  +RPS+ +DG+     +E+D+T +L  II+ N +++Q   E          
Sbjct: 235  VTVLPVPPPPVRPSISVDGTSQGMRSEDDLTYKLGDIIRANGNVKQAHAEGAPNHICTEF 294

Query: 174  WETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTV 232
             E LQ  VA Y+++D+  +P S+Q   RP+     RLKGK+GR RGNL GKRV+++ RTV
Sbjct: 295  EELLQYHVATYMDNDIASIPRSLQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTV 354

Query: 233  ISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA 292
            I+ D N+ + EV +P  +AR LTYPE V+ HNI++L Q + NGP+++PGA+ I   DGT 
Sbjct: 355  ITGDANISLHEVGVPRSIARTLTYPETVTPHNIDRLHQYVVNGPNEHPGAKYIVRTDGT- 413

Query: 293  RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 352
            R+     +N+ + +L+ G  V+RHL  GD ++FNRQPSLH+ S+M H+ R+MP+ T R N
Sbjct: 414  RIDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNRQPSLHKESMMGHQVRVMPYSTFRLN 473

Query: 353  ESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSS 412
             SV +PYNADFDGDEMN+HVPQTEE R E   L  V  N+ +P+    L+   QD L  +
Sbjct: 474  LSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNSPLMGIVQDTLAGT 533

Query: 413  FLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMR 472
            + + R+D F  + A   +  ++ D  D + +P PAIL+P   WTGKQ+ S++I       
Sbjct: 534  YKLCRRDVFLTKEAVMDIMLWVPD-WDGI-IPQPAILRPRPRWTGKQIISMVIPDF---- 587

Query: 473  VYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKD 532
                +T  +    N L                ND  +  ++ EL+ G L K  +G  +  
Sbjct: 588  ----VTTHQGGDWNPL----------------NDDALLIQSGELMFGLLTKKNVGAASG- 626

Query: 533  GLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENY 592
            G+  +   + G       +N   ++   W+ ++G SIGI D  P     +K    I+E  
Sbjct: 627  GIIHICYNEQGPARAMAFLNGCQRVVNYWLLHNGHSIGIGDTIPDPVTIEKIQAHINEQK 686

Query: 593  EVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMS 652
                         +L+  PG +  +T E+ ++  LN  RE AG     SL   N+ + MS
Sbjct: 687  AEVAELTDLATTNRLEALPGMNIRETFESKVSKALNTAREKAGTTTEKSLKDINNAVTMS 746

Query: 653  QCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSG 712
            + GSKGS INISQM A VGQQ V G+R P GF  R+LPHF +    P A+GFV NS+  G
Sbjct: 747  RSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDFSPEARGFVENSYLRG 806

Query: 713  LSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFL 772
            L+ +EFFFH M GREGL+DTAVKTA+TGY+ RRL+KALED++ +YD +VRN+ G I+QF+
Sbjct: 807  LTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVAAKYDGTVRNSLGDIIQFI 866

Query: 773  YGDDGMDPANMEGKSGEPLN-----FDRL--LMKVKATCP---------------PAGQR 810
            YG+DG+D   +E +  + LN     FD +  L  + AT P               PA Q+
Sbjct: 867  YGEDGLDGMAIEKQKMDHLNISNGKFDGMYKLDLMTATRPRELNALEYGNEIFGDPAVQQ 926

Query: 811  YLS----------------------------PQQVSEIVEKQLAAYGKESCSEAFLNS-- 840
             L                             P  V+ ++E     +  +    + L    
Sbjct: 927  LLDEEYDAIKADRQLIREINYKKKDDNDMQLPLNVARVIENAKKLFKIDDAQRSDLKPQD 986

Query: 841  ----LRKFFEGQ-----QDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEK----QLE 887
                ++ F E        D + K+  +   I +  K+Q+   +  K   + E+      +
Sbjct: 987  VIPVVKGFLERMVVVPGDDPISKEANYNSSILF--KAQLRSRLAFKRLAVRERLNRIAFD 1044

Query: 888  VFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKE 947
              I    SR++   V  G  +G + AQSIGEP TQMTL TFHF G++S N+T GVPR+KE
Sbjct: 1045 HVIGEMESRWQRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFTGISSKNVTLGVPRLKE 1104

Query: 948  IINGAKRISTPIITAELE----CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASI 1003
            I+N +  I TP +   L+     +  +  A+ ++  +E T L  V    +I     + + 
Sbjct: 1105 ILNVSAEIKTPGMVVRLDPKMYPDFKQENAKTLRSLVEHTNLRSVTAMTEIYYDPEIQTT 1164

Query: 1004 VIALDMETIQDAHLCINADIVKESIVQT----------PKIKLKQQHI------------ 1041
             I  D + ++  H  I  +   E   Q+           K+  K  HI            
Sbjct: 1165 TIDEDADMLE-GHYLIPEEHQDEPSNQSRWLLRLTLDRQKMLDKNLHIEDVAASIKGAYA 1223

Query: 1042 --------------KVLDFRKLEIFPPVDKSKIHFELYSL-----KNVLPMVIVKGIKTV 1082
                          +V+  R +      DK   + E   +     +++L  + ++GIK +
Sbjct: 1224 SDLVVVHSDNNADEQVIRMRHVIKGDEEDKDGRNIESDQILKRLEEHMLDGLTLRGIKGI 1283

Query: 1083 ERVVIAEKEKEKRKV----------KENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSN 1132
            ER  +    K+ R V          K+  E +++ L  +GT L+ V+  +G+D  +T +N
Sbjct: 1284 ERAFL---NKDTRLVVKPDGSLLNSKDAPECEEWYLDTQGTSLRQVLCVDGVDSVRTLTN 1340

Query: 1133 HIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQ 1192
             ++++   LGIEAAR  ++ E+ + +   G  ++ RH+ LL D+MT+RG +  +TR GI 
Sbjct: 1341 DLYQIVDLLGIEAARTALLGELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGIN 1400

Query: 1193 KMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            + D   LM  SFE+T + L  A+  G  D   G+SE +++G   P+GTG  ++
Sbjct: 1401 RADTGALMRCSFEETVEILLEAAAIGELDDCRGISENVMLGQLAPMGTGAFEV 1453


>gi|303388581|ref|XP_003072524.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
            intestinalis ATCC 50506]
 gi|303301665|gb|ADM11164.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
            intestinalis ATCC 50506]
          Length = 1543

 Score =  640 bits (1650), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 443/1317 (33%), Positives = 667/1317 (50%), Gaps = 179/1317 (13%)

Query: 80   NVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGS 136
            N    +LN   V  +FK+++D DC  +       RPE +I+T + VPP A+RPS++M+GS
Sbjct: 167  NEGKVMLNGERVYSIFKKISDEDCVYMGFDLKYSRPEWMILTVLLVPPPAVRPSIVMEGS 226

Query: 137  QSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
               E+D+T +L  II++N  L++   E           + LQ  VA  I++++ G P ++
Sbjct: 227  LRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATLIDNELGGQPQAL 286

Query: 197  QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            Q + RPL     RLKGK+GR RGNL GKRV+++ RTVI+PDPN+ + EV +P+ +A+I T
Sbjct: 287  QKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPNISLEEVGVPLEVAKIHT 346

Query: 256  YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
            +PERV+  NI+KL + ++ GP+++PGA  +   DG    L   F N+  + L+ G IV+R
Sbjct: 347  FPERVTSFNIDKLEKLVRAGPNEHPGANYVLRSDGQKIDL--NF-NRSDIRLEEGYIVER 403

Query: 316  HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
            H++ GDVVLFNRQPSLH+MS+M H AR+M  +T R N SV +PYNADFDGDEMN+H+PQ+
Sbjct: 404  HMQSGDVVLFNRQPSLHKMSMMAHYARVMGDKTFRLNLSVTSPYNADFDGDEMNLHMPQS 463

Query: 376  EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLM----- 430
              ++ E   L  V   + +P++ + ++   QD LT   L T +DTF +     L+     
Sbjct: 464  YTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMLLLYAVN 523

Query: 431  ----------CCYMGDGMDRVD-------LPTPAILKPVELWTGKQLFSVLIRPHANMRV 473
                        YMG  ++R         L  PAI KP++LWTGKQ+ S ++ P+ N   
Sbjct: 524  IEFSDTAPGETTYMG--VNRTKDYDIMKVLKNPAIAKPMKLWTGKQILSFVL-PNLN--- 577

Query: 474  YVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDG 533
            Y   + +     N+ I               ND  V  +N  + SG + K   G   + G
Sbjct: 578  YTGFSSEHNEDDNENI---------------NDTKVIIQNGYIHSGVIDKKAAG-ATQGG 621

Query: 534  LYSVLLRDYGAHATSGCMNRLAKLSARWI-GNHGFSIGIDDVQPKKELSDKKGKLISENY 592
            L  ++  D+G    +   N + K+   ++ G H FSIGI D     +      + I +  
Sbjct: 622  LIHIIFNDFGPKRAAQFFNGVQKMINIFMTGIHTFSIGIGDTIADAKTVKMVDEAIRKAK 681

Query: 593  EVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMS 652
            E  ++ I+   + +L+  PG    ++ E+ +  +LNR R+ +G +   SL   N+   M 
Sbjct: 682  EEVSIIIENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSGNNNMKTMV 741

Query: 653  QCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSG 712
              GSKGS INISQ+ ACVGQQ+V G+R P GF  R+LPHF +      ++GFV NS+ +G
Sbjct: 742  LAGSKGSFINISQVTACVGQQNVEGKRIPFGFSQRTLPHFVKDDYTGKSRGFVENSYLTG 801

Query: 713  LSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFL 772
            L   EFFFH MGGREGL+DTA+KTA+TGY+ RRL+KALED  ++ D SVR+  G + Q  
Sbjct: 802  LDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVYQVK 861

Query: 773  YGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKES 832
            YG+DG D   +E +  +  NF +   +        G+  +   QVSE V   L       
Sbjct: 862  YGEDGFDATFLESQKVDVKNFTK---RYYIDMFGNGELGIKQGQVSEEVYGIL------- 911

Query: 833  CSEAFLNSL---------RKFFEGQQDKLDKKIKFVEDIGWDDKSQ-------------- 869
            CS+  L  L          + FEG       +I    D    D  Q              
Sbjct: 912  CSDVDLQKLLDQEYEWLVEEIFEGPPISSIGEIDIEHDYRVKDIYQNAVMSPCNLTRLLA 971

Query: 870  -----------------ILEEVTHKTSGITEKQLEVFIQTCFSRYRV------------- 899
                             ILE   HK    + K L V I+T  S  R+             
Sbjct: 972  SAKREFHLSAGDVSPYYILE--AHKNLMTSNKILNVLIRTNLSVKRILLEHKLNTEAFNW 1029

Query: 900  -----------KRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEI 948
                        ++     +G + AQS+GEP TQMTL TFH AGV+S  +T GVPR+KEI
Sbjct: 1030 VVEMIRAKILKAKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSS-TVTMGVPRLKEI 1088

Query: 949  INGAKRISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVI 1005
             N  K + TP +   L+   C   E  A+ ++  IE   +  +  S +I     + S  I
Sbjct: 1089 FNVTKNLKTPSMKIYLDKEHCKTIE-LAKTIQNEIECLTVKDLCLSSEIYYDPEITSTEI 1147

Query: 1006 ALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKV----LDFRKLEIFPPVDKSKIH 1061
            A D + ++ A+     D V  S +    I+L     K+    ++   +  F   +     
Sbjct: 1148 ADDKDFVE-AYFEFPDDDVDFSSLTPFLIRLVVDRAKLVGRGINLEYVATFISKELGNGA 1206

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKE------------------------KRKV 1097
              + S +N + MVI        R+ IA+ E E                        K  +
Sbjct: 1207 HVICSDENAVDMVI--------RIRIAKSEDESLNFYMVVLNSLLKFQLGGYKNIKKVYI 1258

Query: 1098 KENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINET 1157
             E+  +K++ L  +G  L  ++G   ++   T SN + E+ +TLGIEAAR  I+ E+   
Sbjct: 1259 SEDKNRKEWYLQTDGICLPQILGNPSVNSQLTTSNDLIEIAETLGIEAARESILRELAIV 1318

Query: 1158 MKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVN 1217
            +  +G  ++ RHM LLAD+MT RG + GITR G+ K+    L  +SFE+T + L +A++ 
Sbjct: 1319 IDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGAGALKRSSFEETVEILLDAALV 1378

Query: 1218 GRDDRIEGVSECIIMGIPMPLGTG----ILKIRQRD-AVP---PMLKYGAP-DPIMS 1265
               +   G++E I+MG   P+GTG    +L +++ D A+P   P+ K   P  P++S
Sbjct: 1379 SEKNLCRGITENIMMGQLAPMGTGNVEIMLDVKKLDKAIPLSNPVFKPNEPVTPVIS 1435


>gi|449550549|gb|EMD41513.1| hypothetical protein CERSUDRAFT_110068 [Ceriporiopsis subvermispora
            B]
          Length = 1749

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 449/1330 (33%), Positives = 681/1330 (51%), Gaps = 163/1330 (12%)

Query: 35   CGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFL 94
            CG    +V+K    L + + RSK  +             E   ++     +  P  V   
Sbjct: 175  CGAAQPLVRKEGLKLFVQYKRSKDED-------------EEVKSLQPDKRLFPPHEVYTA 221

Query: 95   FKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRI 150
             K+++DTD  +L LS+   RPE +I+T + VPP  +RPS+ +DG +  +E+D+T +L  I
Sbjct: 222  LKKISDTDLHLLGLSDEYARPEWMILTVLPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDI 281

Query: 151  IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRL 209
            I+ +A++++   E   A       + LQ  VA Y+++D+ G+P ++Q + RP+     RL
Sbjct: 282  IKASANVRRCEQEGAPAHVITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARL 341

Query: 210  KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
            KGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +A  LT+PERV+ +NI  L+
Sbjct: 342  KGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDEVGVPRSIAMNLTFPERVTPYNIAYLQ 401

Query: 270  QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQP 329
            + ++NGP  YPGAR +    G    L  ++  +    L+ G IV+RHL+DGD VLFNRQP
Sbjct: 402  ELVRNGPTTYPGARYVVRDTGERIDL--RYNKRADAFLQYGWIVERHLKDGDFVLFNRQP 459

Query: 330  SLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQ 389
            SLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMNMHVPQ+EE R E   +  V 
Sbjct: 460  SLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVP 519

Query: 390  NNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAIL 449
              + +P+  + ++   QD L      T +DTF D +    +  ++ D    V  PTPA++
Sbjct: 520  RQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWSQVQNILLWVPDWDGSV--PTPAVI 577

Query: 450  KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFV 509
            KP  LWTGKQ+ S++I    N+    +       +         D+ + IE         
Sbjct: 578  KPKPLWTGKQILSMVIPRGINIHRSPDPKSPNPVF---------DDGMMIE--------- 619

Query: 510  YFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSI 569
               N E+I G + K T+G  ++ GL  V+ R+ G  A       +  +   W+ ++GFSI
Sbjct: 620  ---NGEIIFGIVEKKTVG-ASQGGLIHVVFREKGPEACRTLFGGIQTVVNYWLFHNGFSI 675

Query: 570  GIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNR 629
            GI D    +   D   + I    +     I +    +L+  PG    ++ E+ +   LN 
Sbjct: 676  GIGDTIADRPTMDHIKEQIQTRKQNVAQTIDDATHDRLKAAPGMTIRESFESKVERELNL 735

Query: 630  IREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSL 689
             R+ +G+    SL   N+   M   GSKGS INISQM  CVGQQ V GRR P GF  RSL
Sbjct: 736  ARDQSGQYAQKSLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQIVEGRRIPFGFRHRSL 795

Query: 690  PHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKA 749
            PHF +    P ++GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+TGY+ RRL+KA
Sbjct: 796  PHFTKDDFSPESRGFVENSYLRGLTPHEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKA 855

Query: 750  LEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF-DRLL---MKVKATCP 805
            LED+ + YD +VRN+ G ++QF+YG+DGMD A +E +  E     DR      +V  T P
Sbjct: 856  LEDVMVCYDGTVRNSLGDLIQFVYGEDGMDGAFIERQHIETYALNDREFEHDYRVDVTDP 915

Query: 806  PAG-----------------QRYLSPQ--QVSEI--VEKQLAAYGKESCSEAFL------ 838
              G                 Q  L  +  Q+SE   + +Q     ++  S  +L      
Sbjct: 916  QGGFLPGVLQVGLDDSSLELQAKLDEEFAQLSEDRRLLRQFVFRRQDPSSPHYLPVNLQR 975

Query: 839  ---NSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQ-------LEV 888
               N+++ F   ++   D +  ++ D   D   ++L  V    S +  +          +
Sbjct: 976  IVQNAIQIFHIDRRKPSDLEPAYIIDAVRDLTHRLL--VVRGDSALGREAQDNATMLFRI 1033

Query: 889  FIQTCFS------RYRVKRVEAGTAIGAIGA---QSIGEPG---------------TQMT 924
             I+  F+      +Y + R      +G I A   QS+  PG               TQMT
Sbjct: 1034 HIRATFATRRVLEKYHLNREAFEWVLGEIEAKFNQSLAHPGEMCGTLAAQSIGEPATQMT 1093

Query: 925  LKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENA--ARVVKGRIEK 982
            L TFH+AGV+S N+T GVPR+KEIIN A  I TP ++  LE    ++A  A+ V+  +  
Sbjct: 1094 LNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLSVYLEPQIAKDAVLAKNVQQELAF 1153

Query: 983  TLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPK-IKLKQQHI 1041
            T L  V  +++I       S +I  D   ++      + ++  +  +Q+P  ++L+    
Sbjct: 1154 TSLRTVTAAVEIWYDPDPQSTIIEEDALFVESFFAIPDEEVEAKLHLQSPWLLRLELDRA 1213

Query: 1042 KVLDFRKLEIFPPVDKSKIH-------FELYSLKNVLPMVI------------------- 1075
            K++D RKL +  P    +I        F ++S  N   ++I                   
Sbjct: 1214 KMID-RKLTM--PYVAGRIAESFKTDLFVIWSEDNSEKLIIRCRVLGGADKDEDGMDTVE 1270

Query: 1076 -----------------VKGIKTVERVVIAEKEK---EKRKVKENGEKKKYRLLVEGTGL 1115
                             ++G+  +ERV + E +K    K    E  ++K++ L  +G  L
Sbjct: 1271 EDIFLRQLENTMLSSISLRGVPGIERVFLLEHDKIIITKEGSIEARQEKEWILETDGVNL 1330

Query: 1116 QAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLAD 1175
            +AVM  +G+D  +T SN   E+   LGIEAAR  I+ E+   ++  G  ++ RH+ LL D
Sbjct: 1331 KAVMCIDGVDFKRTYSNSCVEIFNVLGIEAARAAIMKELRGVIEFDGSYVNYRHLALLCD 1390

Query: 1176 LMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIP 1235
            LMT RG ++ ITR GI + D   LM  SFE+T + L  A+  G  D   G++E ++ G  
Sbjct: 1391 LMTHRGSLMAITRHGINRADTGALMRCSFEETVEILMEAAAVGEKDDCHGIAENVMFGQM 1450

Query: 1236 MPLGTGILKI 1245
             P+GTG  ++
Sbjct: 1451 APMGTGAFEV 1460


>gi|120561201|gb|ABM26986.1| RNA polymerase II largest subunit, partial [Pichia kudriavzevii]
          Length = 1647

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 439/1296 (33%), Positives = 671/1296 (51%), Gaps = 190/1296 (14%)

Query: 90   NVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITER 146
            ++L +F+ ++  DC  L  +E   RPE +++T + VPP  +RPSV    S+ +E+D+T +
Sbjct: 131  DILNVFRHISPEDCHRLGFNEEWARPEWMLLTVLPVPPPPVRPSVAFTDSKRSEDDLTYK 190

Query: 147  LKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
            L  I++ N ++Q+  ++ +     S F++L     LQ  VA Y+++D+ G P ++Q + R
Sbjct: 191  LADILKANINVQKFEMDGSPQHVISEFEAL-----LQYHVATYMDNDIAGQPQALQKSGR 245

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            P+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +AR LTYPE V
Sbjct: 246  PIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPRSIARTLTYPEIV 305

Query: 261  SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
            + +NI+KL + ++NGP+++PGA+ +   +G    L  +F  +   ++L+ G  V+RHL D
Sbjct: 306  TPYNIQKLTEMVRNGPNEHPGAKYVIRENGDRIDL--RFNKRAGDIQLQYGWKVERHLMD 363

Query: 320  GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
             D VLFNRQPSLH+MS+MCHR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+ E R
Sbjct: 364  NDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQSYETR 423

Query: 380  TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
             E   L  V   + +P++ + ++   QD L     +T +DTF +      MC ++ D  D
Sbjct: 424  AELSELCAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLRDTFIEYDQVMNMCYWIPD-WD 482

Query: 440  RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
             V +P PAILKP  LW+GKQ+ S+ I P+                   L R +G      
Sbjct: 483  GV-VPQPAILKPKPLWSGKQILSLCI-PNGIF----------------LQRLDG------ 518

Query: 500  ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
                P D  +   N E++ G + KAT+G  +  GL    +R+ G    +     + K+  
Sbjct: 519  SLTSPKDSGMLIVNGEIMFGVVNKATVG-ASAGGLIHTTMREKGPTTCAKMFGNIQKVVN 577

Query: 560  RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
             W+ ++GFSIGI D     E      + I E  +     I+E  +  L+ +PG    ++ 
Sbjct: 578  YWLLHNGFSIGIGDAIADPETMKTITETIKEAKDKVQTVIREAQKNLLEAEPGMTLRESF 637

Query: 620  EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
            E  ++ ILN  R+ AGK+   SL   N+   M   GSKGS INISQM ACVGQQ V G+R
Sbjct: 638  EQKVSKILNEARDAAGKSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKR 697

Query: 680  APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
               GF DRSLPHF        +KGFV NS+  GL+  EFFFH M GREGL+DTAVKTA+T
Sbjct: 698  INFGFADRSLPHFTTDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET 757

Query: 740  GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 799
            GY+ RRL+KALED+ + YD + RN+ G ++QF+YG+DG+D   +E ++ +          
Sbjct: 758  GYIQRRLLKALEDIMVHYDGTTRNSLGDVIQFIYGEDGLDATTVEKQTVD---------- 807

Query: 800  VKATCPPAGQRYLSPQQVSEIVEKQ-----LAAYGKESCSEAFLNSLRKFFEGQQDKLDK 854
               T P +   +    +V  + EK+     +  YG E   +     L+K  + + ++L K
Sbjct: 808  ---TIPGSNAAFEKKYRVDLMDEKKSIRPDVVEYGSEILGDI---KLQKILDEEYEQLLK 861

Query: 855  KIKFVEDIGWDD-----------------KSQILEEVTHKTSGITEKQLEVFIQTCFSRY 897
              +++  + + D                   QI     +K S +T +++   +Q    ++
Sbjct: 862  DREYLRTVVFPDGENNWPLPVNVRRIVQNAQQIFHVDRYKASDLTIEEIVKSVQELCKKF 921

Query: 898  RVKRVEAGT--------------------------------------AIGAIG---AQSI 916
             V R + G                                        +G I    A+S+
Sbjct: 922  TVVRGDGGCLTEARENSTLLFQCLIRSKLATRRVLEEYKLNKDAFEWVVGTIAQQFARSL 981

Query: 917  GEPG---------------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIIT 961
              PG               TQMTL TFH+AGV+S N+T GVPR+KEI+N AK   TP +T
Sbjct: 982  VNPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNFKTPALT 1041

Query: 962  AELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLC 1018
              LE     D E  A+ ++  IE T L  V    +I       + VI  D +T++ A+  
Sbjct: 1042 VYLEEEYATDIEK-AKSIQSAIEHTSLKNVTACTEIYYDPDPRTTVIEEDFDTVE-AYFA 1099

Query: 1019 INADIVKESI-VQTPK-IKLKQQHIKVLDFRKLEIFPPVDKSKIHFE-----LYSLKNVL 1071
            I  + V+E++  Q+P  ++L+    K+LD ++L +     K   +F      ++S  N  
Sbjct: 1100 IPDEKVEENLHKQSPWLLRLELDRAKMLD-KQLSMQQVAAKIMENFGDDLFVIWSEDNAD 1158

Query: 1072 PMVI-----------------------------------VKGIKTVERVVIAEKEKEKRK 1096
             +VI                                   ++G+  + RV +   + +K  
Sbjct: 1159 KLVIRCRIVREEKALDEEEEDTEDGLLKALEAQMLESITLRGVSGISRVFMM--KYDKTY 1216

Query: 1097 VKENGE---KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDE 1153
            + E+G+   K+++ L  +G  L  V+  EGID  +T SN   E+    GIEAAR  +  E
Sbjct: 1217 IAEDGDFAKKQEWVLETDGINLADVITVEGIDTTRTYSNSFVEILFVFGIEAARSALYKE 1276

Query: 1154 INETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFN 1213
            I   +   G  ++ RH+ LL DLMT++G ++ I+R G  + D   LM  SFE+T + LF+
Sbjct: 1277 ILNVIAFDGSYVNYRHLALLVDLMTYKGHLIAISRHGFNRNDTGALMRCSFEETVEILFD 1336

Query: 1214 ASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRD 1249
            A  +   D  +GVS+ II+G   P GTG   +   D
Sbjct: 1337 AGASAELDTCDGVSQNIILGQMAPFGTGSFDVYLDD 1372


>gi|68473217|ref|XP_719414.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
 gi|46441230|gb|EAL00529.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
          Length = 1728

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 445/1301 (34%), Positives = 671/1301 (51%), Gaps = 188/1301 (14%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L P  +L +FK ++  DC  +  +E   RPE ++IT + VPP  +RPS+  + +   E+
Sbjct: 201  LLTPSEILNVFKHISPEDCYKMGFNEDYARPEWMLITVLPVPPPPVRPSIAFNETARGED 260

Query: 142  DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
            D+T +L  II+ N ++Q+   + +     S F++L     LQ  VA Y+++D+ G P ++
Sbjct: 261  DLTFKLADIIKANINVQRLETDGSPQHVISEFEAL-----LQFHVATYMDNDIAGQPQAL 315

Query: 197  Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            Q   RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +A+ LT
Sbjct: 316  QKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLT 375

Query: 256  YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
            YPE V+ +NI KL + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+
Sbjct: 376  YPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVE 433

Query: 315  RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
            RHL D D VLFNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 434  RHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 493

Query: 375  TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
            + E R+E   +  V   + +P++ + ++   QD L     +T +D F  YD+    +  C
Sbjct: 494  SPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQV---MNMC 550

Query: 433  YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
            Y     D V +P PA++KP +LWTGKQL S+ I    +++                 R +
Sbjct: 551  YWIPNWDGV-IPPPAVVKPKQLWTGKQLLSLAIPKGIHLQ-----------------RFD 592

Query: 493  GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
            G  ++    + P D  +   + E++ G + K T+G     GL   ++R+ G    +   +
Sbjct: 593  GGRDL----LSPKDTGMLIVDGEIMFGVVDKKTVG-ATGGGLIHTVMREKGPKVCAELFS 647

Query: 553  RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
             + K+   W+ ++GFSIGI D     +      K I E  +     I +    KL+ +PG
Sbjct: 648  SIQKVVNYWLLHNGFSIGIGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPG 707

Query: 613  CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
                ++ E  ++ +LN+ R+ AG++   SL   N+   M   GSKGS INISQM ACVGQ
Sbjct: 708  MTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 767

Query: 673  QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
            Q V G+R P GF DRSLPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DT
Sbjct: 768  QIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 827

Query: 733  AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS----- 787
            AVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D   +E +S     
Sbjct: 828  AVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIP 887

Query: 788  GEPLNFDRLLMKVKATCPPAGQRY-LSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFE 846
            G   +F+R              RY +       ++ + L   GKE   +     L+K  +
Sbjct: 888  GSDESFER--------------RYKIDVLDTENVISESLLESGKEIRGDV---QLQKILD 930

Query: 847  GQQDKLDKKIKFVE-------DIGW----------DDKSQILEEVTHKTS---------G 880
             + ++L K  K++        D  W           +  QI     ++ S         G
Sbjct: 931  EEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEEIVLG 990

Query: 881  ITEKQLEVFIQ------------------TCFSR-----------YRVKRVEAGTAIGAI 911
            + E  +++ +                    C  R           +++ R      +G I
Sbjct: 991  VKELCMKLLVVRGDTPLVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEI 1050

Query: 912  GAQ---SIGEPG---------------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
              Q   SI  PG               TQMTL TFH+AGV+S N+T GVPR+KEI+N AK
Sbjct: 1051 ETQFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAK 1110

Query: 954  RISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
             I TP +T  L  E   +   A++V+  IE T L  V  S +I       + VI  D +T
Sbjct: 1111 NIKTPAMTVFLDPEVASDIEKAKIVQSAIEHTTLKNVTSSTEIYYDPDPRTTVIEDDYDT 1170

Query: 1012 IQDAHLCINADIVKESI-VQTPK-IKLKQQHIKVLDFRKLEIFPPVDKSKIHF--ELYSL 1067
            ++ A+  I    V+ESI  Q+P  ++L+    K+LD ++L +    +K   +F  +L+ +
Sbjct: 1171 VE-AYFAIPDQKVEESIDKQSPWLLRLELDRAKMLD-KQLTMAQVAEKISQNFGEDLFVI 1228

Query: 1068 --------------------------------------KNVLPMVIVKGIKTVERVVIAE 1089
                                                   ++L  + ++GI  + RV + +
Sbjct: 1229 WSDDTADKLIIRCRVVRDPKSLDEDADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQ 1288

Query: 1090 -KEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARI 1148
             K     +  E  + K++ L  +G  L  VM   G+D  +T SN   EV   LGIEA R 
Sbjct: 1289 HKVSHPDETGEFKQGKEWVLETDGVNLADVMAVPGVDSTRTYSNDFIEVLSVLGIEATRS 1348

Query: 1149 CIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTA 1208
             +  EI   +   G  ++ RHM LL D+MT RG ++ ITR GI + D   LM  SFE+T 
Sbjct: 1349 SLYKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETV 1408

Query: 1209 DHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRD 1249
            + L +A+     D  +G+SE +++G   PLGTG   +   D
Sbjct: 1409 EILLDAAAAAELDDCKGISENVMLGQMAPLGTGSFDLMVDD 1449


>gi|238880428|gb|EEQ44066.1| DNA-directed RNA polymerase II largest subunit [Candida albicans
            WO-1]
          Length = 1742

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 445/1301 (34%), Positives = 671/1301 (51%), Gaps = 188/1301 (14%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L P  +L +FK ++  DC  +  +E   RPE ++IT + VPP  +RPS+  + +   E+
Sbjct: 201  LLTPSEILNVFKHISPEDCYKMGFNEDYARPEWMLITVLPVPPPPVRPSIAFNETARGED 260

Query: 142  DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
            D+T +L  II+ N ++Q+   + +     S F++L     LQ  VA Y+++D+ G P ++
Sbjct: 261  DLTFKLADIIKANINVQRLETDGSPQHVISEFEAL-----LQFHVATYMDNDIAGQPQAL 315

Query: 197  Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            Q   RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +A+ LT
Sbjct: 316  QKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLT 375

Query: 256  YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
            YPE V+ +NI KL + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+
Sbjct: 376  YPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVE 433

Query: 315  RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
            RHL D D VLFNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 434  RHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 493

Query: 375  TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
            + E R+E   +  V   + +P++ + ++   QD L     +T +D F  YD+    +  C
Sbjct: 494  SPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQV---MNMC 550

Query: 433  YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
            Y     D V +P PA++KP +LWTGKQL S+ I    +++                 R +
Sbjct: 551  YWIPNWDGV-IPPPAVVKPKQLWTGKQLLSLAIPKGIHLQ-----------------RFD 592

Query: 493  GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
            G  ++    + P D  +   + E++ G + K T+G     GL   ++R+ G    +   +
Sbjct: 593  GGRDL----LSPKDTGMLIVDGEIMFGVVDKKTVG-ATGGGLIHTVMREKGPKVCAELFS 647

Query: 553  RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
             + K+   W+ ++GFSIGI D     +      K I E  +     I +    KL+ +PG
Sbjct: 648  SIQKVVNYWLLHNGFSIGIGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPG 707

Query: 613  CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
                ++ E  ++ +LN+ R+ AG++   SL   N+   M   GSKGS INISQM ACVGQ
Sbjct: 708  MTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 767

Query: 673  QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
            Q V G+R P GF DRSLPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DT
Sbjct: 768  QIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 827

Query: 733  AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS----- 787
            AVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D   +E +S     
Sbjct: 828  AVKTAETGYIPRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIP 887

Query: 788  GEPLNFDRLLMKVKATCPPAGQRY-LSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFE 846
            G   +F+R              RY +       ++ + L   GKE   +     L+K  +
Sbjct: 888  GSDESFER--------------RYKIDVLDTENVISESLLESGKEIRGDV---QLQKILD 930

Query: 847  GQQDKLDKKIKFVE-------DIGW----------DDKSQILEEVTHKTS---------G 880
             + ++L K  K++        D  W           +  QI     ++ S         G
Sbjct: 931  EEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEEIVLG 990

Query: 881  ITEKQLEVFIQ------------------TCFSR-----------YRVKRVEAGTAIGAI 911
            + E  +++ +                    C  R           +++ R      +G I
Sbjct: 991  VKELCMKLLVVRGDTPLVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEI 1050

Query: 912  GAQ---SIGEPG---------------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
              Q   SI  PG               TQMTL TFH+AGV+S N+T GVPR+KEI+N AK
Sbjct: 1051 ETQFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAK 1110

Query: 954  RISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
             I TP +T  L  E   +   A++V+  IE T L  V  S +I       + VI  D +T
Sbjct: 1111 NIKTPAMTVFLDPEVASDIEKAKIVQSAIEHTTLKNVTSSTEIYYDPDPRTTVIEDDYDT 1170

Query: 1012 IQDAHLCINADIVKESI-VQTPK-IKLKQQHIKVLDFRKLEIFPPVDKSKIHF--ELYSL 1067
            ++ A+  I    V+ESI  Q+P  ++L+    K+LD ++L +    +K   +F  +L+ +
Sbjct: 1171 VE-AYFAIPDQKVEESIDKQSPWLLRLELDRAKMLD-KQLTMAQVAEKISQNFGEDLFVI 1228

Query: 1068 --------------------------------------KNVLPMVIVKGIKTVERVVIAE 1089
                                                   ++L  + ++GI  + RV + +
Sbjct: 1229 WSDDTADKLIIRCRVVRDPKSLDEDADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQ 1288

Query: 1090 -KEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARI 1148
             K     +  E  + K++ L  +G  L  VM   G+D  +T SN   EV   LGIEA R 
Sbjct: 1289 HKVSHPDETGEFKQGKEWVLETDGVNLADVMAVPGVDSTRTYSNDFIEVLSVLGIEATRS 1348

Query: 1149 CIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTA 1208
             +  EI   +   G  ++ RHM LL D+MT RG ++ ITR GI + D   LM  SFE+T 
Sbjct: 1349 SLYKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETV 1408

Query: 1209 DHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRD 1249
            + L +A+     D  +G+SE +++G   PLGTG   +   D
Sbjct: 1409 EILLDAAAAAELDDCKGISENVMLGQMAPLGTGSFDLMVDD 1449


>gi|207347072|gb|EDZ73379.1| YDL140Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1578

 Score =  636 bits (1641), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 441/1273 (34%), Positives = 662/1273 (52%), Gaps = 142/1273 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L+   +L +FK ++  D   L  +E   RPE +I+T + VPP  +RPS+  + SQ  E+
Sbjct: 46   VLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGED 105

Query: 142  DITERLKRIIQTNASLQQELVEANSA-FKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA 199
            D+T +L  I++ N SL  E +E N A   ++   E+L Q  VA Y+++D+ G P ++Q +
Sbjct: 106  DLTFKLADILKANISL--ETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKS 163

Query: 200  -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
             RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +A+ LTYPE
Sbjct: 164  GRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPE 223

Query: 259  RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
             V+ +NI++L Q ++NGP+++PGA+ +   D   R+     +    ++L+ G  V+RH+ 
Sbjct: 224  VVTPYNIDRLTQLVRNGPNEHPGAKYV-IRDSGDRIDLRYSKRAGDIQLQYGWKVERHIM 282

Query: 319  DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
            D D VLFNRQPSLH+MS+M HR +++P+ T R N SV +PYNADFDGDEMN+HVPQ+EE 
Sbjct: 283  DNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 342

Query: 379  RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
            R E   L  V   + +P++ +  +   QD L     +T +DTF +      M  ++ D  
Sbjct: 343  RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPD-W 401

Query: 439  DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            D V +PTPAI+KP  LW+GKQ+ SV I    +++ +                   DE   
Sbjct: 402  DGV-IPTPAIIKPKPLWSGKQILSVAIPNGIHLQRF-------------------DEGTT 441

Query: 499  IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
            +  + P D  +   + ++I G + K T+G+ N  GL  V+ R+ G    +     + K+ 
Sbjct: 442  L--LSPKDNGMLIIDGQIIFGVVEKKTVGSSNG-GLIHVVTREKGPQVCAKLFGNIQKVV 498

Query: 559  ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+ ++GFS GI D         +  + I+E  +      KE     L  K G    ++
Sbjct: 499  NFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRES 558

Query: 619  LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
             E  +   LN  R+ AG+    +L   N+   M   GSKGS INI+QM ACVGQQSV G+
Sbjct: 559  FEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGK 618

Query: 679  RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
            R   GF+DR+LPHF +    P +KGFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+
Sbjct: 619  RIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 678

Query: 739  TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS-----GEPLNF 793
            TGY+ RRL+KALED+ + YDN+ RN+ G ++QF+YG+DGMD A++E +S     G    F
Sbjct: 679  TGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAF 738

Query: 794  DRL----LMKVKATCPP----AGQRYLSPQQVSEIVEKQLAAYGKES--CSEAFLN---- 839
            ++     L+    T  P    +G   L   ++  +++++     K+     E F++    
Sbjct: 739  EKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEAN 798

Query: 840  -----SLRKFFEGQQ-----DKLDKKIKFVEDI--GWDDKSQILEEVTHKTSGITEKQLE 887
                 ++R+  +  Q     D        ++DI  G  D  + L  +  K   I   Q +
Sbjct: 799  WPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRD 858

Query: 888  VFIQTC------------FSRYRVKRVEAGTAIGAIGAQ------------------SIG 917
                 C               YR+ +      +  I AQ                  SIG
Sbjct: 859  AVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIG 918

Query: 918  EPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECND--NENAARV 975
            EP TQMTL TFHFAGVAS  +T GVPR+KEI+N AK + TP +T  LE     ++  A++
Sbjct: 919  EPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKL 978

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ---------------------- 1013
            ++  IE T L  V  + +I       S VI  D E IQ                      
Sbjct: 979  IRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLL 1038

Query: 1014 ----DAHLCINADI----VKESIVQTPKIKL----KQQHIKVLDFRKLEIFP-PVDKSKI 1060
                D     + D+    V E I QT K  L     + + + L  R   + P  +D    
Sbjct: 1039 RLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETE 1098

Query: 1061 HFELYSLKNV----LPMVIVKGIKTVERVVIAEKEKEKRKVK----ENGEKKKYRLLVEG 1112
              E + LK +    L  + ++G++ +ERVV+    K  RKV     E  ++ ++ L  +G
Sbjct: 1099 AEEDHMLKKIENTMLENITLRGVENIERVVMM---KYDRKVPSPTGEYVKEPEWVLETDG 1155

Query: 1113 TGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMML 1172
              L  VM   GID  +  +N   ++ + LGIEA R  +  E+   + + G  ++ RHM L
Sbjct: 1156 VNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMAL 1215

Query: 1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232
            L D+MT +G +  +TR G  + +   LM  SFE+T + LF A  +   D   GVSE +I+
Sbjct: 1216 LVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVIL 1275

Query: 1233 GIPMPLGTGILKI 1245
            G   P+GTG   +
Sbjct: 1276 GQMAPIGTGAFDV 1288


>gi|256273567|gb|EEU08500.1| Rpo21p [Saccharomyces cerevisiae JAY291]
          Length = 1733

 Score =  636 bits (1641), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 441/1273 (34%), Positives = 662/1273 (52%), Gaps = 142/1273 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L+   +L +FK ++  D   L  +E   RPE +I+T + VPP  +RPS+  + SQ  E+
Sbjct: 201  VLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGED 260

Query: 142  DITERLKRIIQTNASLQQELVEANSA-FKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA 199
            D+T +L  I++ N SL  E +E N A   ++   E+L Q  VA Y+++D+ G P ++Q +
Sbjct: 261  DLTFKLADILKANISL--ETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKS 318

Query: 200  -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
             RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +A+ LTYPE
Sbjct: 319  GRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPE 378

Query: 259  RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
             V+ +NI++L Q ++NGP+++PGA+ +   D   R+     +    ++L+ G  V+RH+ 
Sbjct: 379  VVTPYNIDRLTQLVRNGPNEHPGAKYV-IRDSGDRIDLRYSKRAGDIQLQYGWKVERHIM 437

Query: 319  DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
            D D VLFNRQPSLH+MS+M HR +++P+ T R N SV +PYNADFDGDEMN+HVPQ+EE 
Sbjct: 438  DNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 497

Query: 379  RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
            R E   L  V   + +P++ +  +   QD L     +T +DTF +      M  ++ D  
Sbjct: 498  RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPD-W 556

Query: 439  DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            D V +PTPAI+KP  LW+GKQ+ SV I    +++ +                   DE   
Sbjct: 557  DGV-IPTPAIIKPKPLWSGKQILSVAIPNGIHLQRF-------------------DEGTT 596

Query: 499  IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
            +  + P D  +   + ++I G + K T+G+ N  GL  V+ R+ G    +     + K+ 
Sbjct: 597  L--LSPKDNGMLIIDGQIIFGVVEKKTVGSSNG-GLIHVVTREKGPQVCAKLFGNIQKVV 653

Query: 559  ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+ ++GFS GI D         +  + I+E  +      KE     L  K G    ++
Sbjct: 654  NFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRES 713

Query: 619  LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
             E  +   LN  R+ AG+    +L   N+   M   GSKGS INI+QM ACVGQQSV G+
Sbjct: 714  FEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGK 773

Query: 679  RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
            R   GF+DR+LPHF +    P +KGFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+
Sbjct: 774  RIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833

Query: 739  TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS-----GEPLNF 793
            TGY+ RRL+KALED+ + YDN+ RN+ G ++QF+YG+DGMD A++E +S     G    F
Sbjct: 834  TGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAF 893

Query: 794  DRL----LMKVKATCPP----AGQRYLSPQQVSEIVEKQLAAYGKES--CSEAFLN---- 839
            ++     L+    T  P    +G   L   ++  +++++     K+     E F++    
Sbjct: 894  EKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEAN 953

Query: 840  -----SLRKFFEGQQ-----DKLDKKIKFVEDI--GWDDKSQILEEVTHKTSGITEKQLE 887
                 ++R+  +  Q     D        ++DI  G  D  + L  +  K   I   Q +
Sbjct: 954  WPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRD 1013

Query: 888  VFIQTC------------FSRYRVKRVEAGTAIGAIGAQ------------------SIG 917
                 C               YR+ +      +  I AQ                  SIG
Sbjct: 1014 AVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIG 1073

Query: 918  EPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECND--NENAARV 975
            EP TQMTL TFHFAGVAS  +T GVPR+KEI+N AK + TP +T  LE     ++  A++
Sbjct: 1074 EPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKL 1133

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ---------------------- 1013
            ++  IE T L  V  + +I       S VI  D E IQ                      
Sbjct: 1134 IRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLL 1193

Query: 1014 ----DAHLCINADI----VKESIVQTPKIKL----KQQHIKVLDFRKLEIFP-PVDKSKI 1060
                D     + D+    V E I QT K  L     + + + L  R   + P  +D    
Sbjct: 1194 RLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETE 1253

Query: 1061 HFELYSLKNV----LPMVIVKGIKTVERVVIAEKEKEKRKVK----ENGEKKKYRLLVEG 1112
              E + LK +    L  + ++G++ +ERVV+    K  RKV     E  ++ ++ L  +G
Sbjct: 1254 AEEDHMLKKIENTMLENITLRGVENIERVVMM---KYDRKVPSPTGEYVKEPEWVLETDG 1310

Query: 1113 TGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMML 1172
              L  VM   GID  +  +N   ++ + LGIEA R  +  E+   + + G  ++ RHM L
Sbjct: 1311 VNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMAL 1370

Query: 1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232
            L D+MT +G +  +TR G  + +   LM  SFE+T + LF A  +   D   GVSE +I+
Sbjct: 1371 LVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVIL 1430

Query: 1233 GIPMPLGTGILKI 1245
            G   P+GTG   +
Sbjct: 1431 GQMAPIGTGAFDV 1443


>gi|6320061|ref|NP_010141.1| Rpo21p [Saccharomyces cerevisiae S288c]
 gi|2507347|sp|P04050.2|RPB1_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit 1; Short=RNA polymerase II subunit
            B1; AltName: Full=DNA-directed RNA polymerase III largest
            subunit; AltName: Full=RNA polymerase II subunit B220
 gi|14278324|pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
 gi|14278335|pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
 gi|14278365|pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
 gi|20150713|pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
            The Inhibitor Alpha Amanitin
 gi|30749616|pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
 gi|30749737|pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
 gi|34810553|pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
 gi|46015415|pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
 gi|46015780|pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex
 gi|56965911|pdb|1R9S|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
            Matched Nucleotide
 gi|56965923|pdb|1R9T|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
            Mismatched Nucleotide
 gi|56966107|pdb|1TWA|A Chain A, Rna Polymerase Ii Complexed With Atp
 gi|56966121|pdb|1TWC|A Chain A, Rna Polymerase Ii Complexed With Gtp
 gi|56966131|pdb|1TWF|A Chain A, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
 gi|56966141|pdb|1TWG|A Chain A, Rna Polymerase Ii Complexed With Ctp
 gi|56966151|pdb|1TWH|A Chain A, Rna Polymerase Ii Complexed With 2'datp
 gi|58177164|pdb|1WCM|A Chain A, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
 gi|61679444|pdb|1Y1W|A Chain A, Complete Rna Polymerase Ii Elongation Complex
 gi|61679461|pdb|1Y77|A Chain A, Complete Rna Polymerase Ii Elongation Complex With Substrate
            Analogue Gmpcpp
 gi|61679502|pdb|1Y1V|A Chain A, Refined Rna Polymerase Ii-tfiis Complex
 gi|61679515|pdb|1Y1Y|A Chain A, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
 gi|83754243|pdb|2B63|A Chain A, Complete Rna Polymerase Ii-Rna Inhibitor Complex
 gi|110590854|pdb|2B8K|A Chain A, 12-Subunit Rna Polymerase Ii
 gi|122920061|pdb|2E2H|A Chain A, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
 gi|122920076|pdb|2E2I|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
            Dgtp
 gi|122920091|pdb|2E2J|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
            Gmpcpp
 gi|122921030|pdb|2NVQ|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
            2'dutp
 gi|122921066|pdb|2NVT|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
            Gmpcpp
 gi|122921082|pdb|2NVX|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
            Dutp
 gi|122921097|pdb|2NVY|A Chain A, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
 gi|122921109|pdb|2NVZ|A Chain A, Rna Polymerase Ii Elongation Complex With Utp, Updated
            112006
 gi|134104674|pdb|2JA5|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex A
 gi|134104689|pdb|2JA6|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex B
 gi|134104710|pdb|2JA7|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
 gi|134104722|pdb|2JA7|M Chain M, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
 gi|134104734|pdb|2JA8|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex D
 gi|146387184|pdb|2YU9|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With Utp
 gi|160877773|pdb|2R7Z|A Chain A, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
            Complex
 gi|161172227|pdb|2R92|A Chain A, Elongation Complex Of Rna Polymerase Ii With Artificial Rdrp
            Scaffold
 gi|161172240|pdb|2R93|A Chain A, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
            Delta Virus-Derived Rna Stem Loop
 gi|190613462|pdb|2VUM|A Chain A, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
            Elongation Complex
 gi|194368734|pdb|3CQZ|A Chain A, Crystal Structure Of 10 Subunit Rna Polymerase Ii In Complex
            With The Inhibitor Alpha-Amanitin
 gi|224983590|pdb|3FKI|A Chain A, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
 gi|239781916|pdb|3GTG|A Chain A, Backtracked Rna Polymerase Ii Complex With 12mer Rna
 gi|239781929|pdb|3GTJ|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer Rna
 gi|239781942|pdb|3GTK|A Chain A, Backtracked Rna Polymerase Ii Complex With 18mer Rna
 gi|239781955|pdb|3GTL|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
            Mismatch
 gi|239781968|pdb|3GTM|A Chain A, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
 gi|239781982|pdb|3GTO|A Chain A, Backtracked Rna Polymerase Ii Complex With 15mer Rna
 gi|239781995|pdb|3GTP|A Chain A, Backtracked Rna Polymerase Ii Complex With 24mer Rna
 gi|239782008|pdb|3GTQ|A Chain A, Backtracked Rna Polymerase Ii Complex Induced By Damage
 gi|240104511|pdb|3H3V|B Chain B, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
            Active Site
 gi|254839441|pdb|3HOU|A Chain A, Complete Rna Polymerase Ii Elongation Complex I With A T-U
            Mismatch
 gi|254839456|pdb|3HOU|M Chain M, Complete Rna Polymerase Ii Elongation Complex I With A T-U
            Mismatch
 gi|254839471|pdb|3HOV|A Chain A, Complete Rna Polymerase Ii Elongation Complex Ii
 gi|254839486|pdb|3HOW|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iii With A T-U
            Mismatch And A Frayed Rna 3'-Uridine
 gi|254839501|pdb|3HOX|A Chain A, Complete Rna Polymerase Ii Elongation Complex V
 gi|254839516|pdb|3HOY|A Chain A, Complete Rna Polymerase Ii Elongation Complex Vi
 gi|254839531|pdb|3HOZ|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iv With A T-U
            Mismatch And A Frayed Rna 3'-Guanine
 gi|257471946|pdb|3I4M|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
            D
 gi|257471961|pdb|3I4N|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
            E
 gi|266618765|pdb|3K1F|A Chain A, Crystal Structure Of Rna Polymerase Ii In Complex With Tfiib
 gi|269914552|pdb|3K7A|A Chain A, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
 gi|295982475|pdb|3M3Y|A Chain A, Rna Polymerase Ii Elongation Complex C
 gi|295982488|pdb|3M4O|A Chain A, Rna Polymerase Ii Elongation Complex B
 gi|325053963|pdb|3PO2|A Chain A, Arrested Rna Polymerase Ii Elongation Complex
 gi|325053978|pdb|3PO3|A Chain A, Arrested Rna Polymerase Ii Reactivation Intermediate
 gi|326634538|pdb|3QT1|A Chain A, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
            Subunit
 gi|343197456|pdb|3RZD|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
 gi|343197468|pdb|3RZO|A Chain A, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
 gi|343197480|pdb|3S14|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
 gi|343197492|pdb|3S15|A Chain A, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
 gi|343197504|pdb|3S16|A Chain A, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
 gi|343197516|pdb|3S17|A Chain A, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
 gi|343197528|pdb|3S1M|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            (Variant 1)
 gi|343197540|pdb|3S1N|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            (Variant 2)
 gi|343197552|pdb|3S1Q|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
            Rna Soaked With Atp
 gi|343197564|pdb|3S1R|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
            Rna Soaked With Gtp
 gi|343197576|pdb|3S2D|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            Containing A 5br- U
 gi|343781197|pdb|3S2H|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
            Containing A 2[prime]-Iodo Atp
 gi|414145446|pdb|4BBR|A Chain A, Structure Of Rna Polymerase Ii-tfiib Complex
 gi|414145459|pdb|4BBS|A Chain A, Structure Of An Initially Transcribing Rna Polymerase Ii-
            Tfiib Complex
 gi|1419221|emb|CAA65619.1| RPB1 [Saccharomyces cerevisiae]
 gi|1431217|emb|CAA98713.1| RPO21 [Saccharomyces cerevisiae]
 gi|151941861|gb|EDN60217.1| RNA polymerase [Saccharomyces cerevisiae YJM789]
 gi|285810894|tpg|DAA11718.1| TPA: Rpo21p [Saccharomyces cerevisiae S288c]
 gi|349576938|dbj|GAA22107.1| K7_Rpo21p [Saccharomyces cerevisiae Kyokai no. 7]
 gi|392300684|gb|EIW11775.1| Rpo21p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1733

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 441/1273 (34%), Positives = 662/1273 (52%), Gaps = 142/1273 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L+   +L +FK ++  D   L  +E   RPE +I+T + VPP  +RPS+  + SQ  E+
Sbjct: 201  VLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGED 260

Query: 142  DITERLKRIIQTNASLQQELVEANSA-FKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA 199
            D+T +L  I++ N SL  E +E N A   ++   E+L Q  VA Y+++D+ G P ++Q +
Sbjct: 261  DLTFKLADILKANISL--ETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKS 318

Query: 200  -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
             RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +A+ LTYPE
Sbjct: 319  GRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPE 378

Query: 259  RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
             V+ +NI++L Q ++NGP+++PGA+ +   D   R+     +    ++L+ G  V+RH+ 
Sbjct: 379  VVTPYNIDRLTQLVRNGPNEHPGAKYV-IRDSGDRIDLRYSKRAGDIQLQYGWKVERHIM 437

Query: 319  DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
            D D VLFNRQPSLH+MS+M HR +++P+ T R N SV +PYNADFDGDEMN+HVPQ+EE 
Sbjct: 438  DNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 497

Query: 379  RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
            R E   L  V   + +P++ +  +   QD L     +T +DTF +      M  ++ D  
Sbjct: 498  RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPD-W 556

Query: 439  DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            D V +PTPAI+KP  LW+GKQ+ SV I    +++ +                   DE   
Sbjct: 557  DGV-IPTPAIIKPKPLWSGKQILSVAIPNGIHLQRF-------------------DEGTT 596

Query: 499  IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
            +  + P D  +   + ++I G + K T+G+ N  GL  V+ R+ G    +     + K+ 
Sbjct: 597  L--LSPKDNGMLIIDGQIIFGVVEKKTVGSSNG-GLIHVVTREKGPQVCAKLFGNIQKVV 653

Query: 559  ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+ ++GFS GI D         +  + I+E  +      KE     L  K G    ++
Sbjct: 654  NFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRES 713

Query: 619  LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
             E  +   LN  R+ AG+    +L   N+   M   GSKGS INI+QM ACVGQQSV G+
Sbjct: 714  FEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGK 773

Query: 679  RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
            R   GF+DR+LPHF +    P +KGFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+
Sbjct: 774  RIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833

Query: 739  TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS-----GEPLNF 793
            TGY+ RRL+KALED+ + YDN+ RN+ G ++QF+YG+DGMD A++E +S     G    F
Sbjct: 834  TGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAF 893

Query: 794  DRL----LMKVKATCPP----AGQRYLSPQQVSEIVEKQLAAYGKES--CSEAFLN---- 839
            ++     L+    T  P    +G   L   ++  +++++     K+     E F++    
Sbjct: 894  EKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEAN 953

Query: 840  -----SLRKFFEGQQ-----DKLDKKIKFVEDI--GWDDKSQILEEVTHKTSGITEKQLE 887
                 ++R+  +  Q     D        ++DI  G  D  + L  +  K   I   Q +
Sbjct: 954  WPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRD 1013

Query: 888  VFIQTC------------FSRYRVKRVEAGTAIGAIGAQ------------------SIG 917
                 C               YR+ +      +  I AQ                  SIG
Sbjct: 1014 AVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIG 1073

Query: 918  EPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECND--NENAARV 975
            EP TQMTL TFHFAGVAS  +T GVPR+KEI+N AK + TP +T  LE     ++  A++
Sbjct: 1074 EPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKL 1133

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ---------------------- 1013
            ++  IE T L  V  + +I       S VI  D E IQ                      
Sbjct: 1134 IRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLL 1193

Query: 1014 ----DAHLCINADI----VKESIVQTPKIKL----KQQHIKVLDFRKLEIFP-PVDKSKI 1060
                D     + D+    V E I QT K  L     + + + L  R   + P  +D    
Sbjct: 1194 RLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETE 1253

Query: 1061 HFELYSLKNV----LPMVIVKGIKTVERVVIAEKEKEKRKVK----ENGEKKKYRLLVEG 1112
              E + LK +    L  + ++G++ +ERVV+    K  RKV     E  ++ ++ L  +G
Sbjct: 1254 AEEDHMLKKIENTMLENITLRGVENIERVVMM---KYDRKVPSPTGEYVKEPEWVLETDG 1310

Query: 1113 TGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMML 1172
              L  VM   GID  +  +N   ++ + LGIEA R  +  E+   + + G  ++ RHM L
Sbjct: 1311 VNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMAL 1370

Query: 1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232
            L D+MT +G +  +TR G  + +   LM  SFE+T + LF A  +   D   GVSE +I+
Sbjct: 1371 LVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVIL 1430

Query: 1233 GIPMPLGTGILKI 1245
            G   P+GTG   +
Sbjct: 1431 GQMAPIGTGAFDV 1443


>gi|190405143|gb|EDV08410.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
          Length = 1733

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 441/1273 (34%), Positives = 662/1273 (52%), Gaps = 142/1273 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L+   +L +FK ++  D   L  +E   RPE +I+T + VPP  +RPS+  + SQ  E+
Sbjct: 201  VLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGED 260

Query: 142  DITERLKRIIQTNASLQQELVEANSA-FKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA 199
            D+T +L  I++ N SL  E +E N A   ++   E+L Q  VA Y+++D+ G P ++Q +
Sbjct: 261  DLTFKLADILKANISL--ETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKS 318

Query: 200  -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
             RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +A+ LTYPE
Sbjct: 319  GRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPE 378

Query: 259  RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
             V+ +NI++L Q ++NGP+++PGA+ +   D   R+     +    ++L+ G  V+RH+ 
Sbjct: 379  VVTPYNIDRLTQLVRNGPNEHPGAKYV-IRDSGDRIDLRYSKRAGDIQLQYGWKVERHIM 437

Query: 319  DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
            D D VLFNRQPSLH+MS+M HR +++P+ T R N SV +PYNADFDGDEMN+HVPQ+EE 
Sbjct: 438  DNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 497

Query: 379  RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
            R E   L  V   + +P++ +  +   QD L     +T +DTF +      M  ++ D  
Sbjct: 498  RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPD-W 556

Query: 439  DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            D V +PTPAI+KP  LW+GKQ+ SV I    +++ +                   DE   
Sbjct: 557  DGV-IPTPAIIKPKPLWSGKQILSVAIPNGIHLQRF-------------------DEGTT 596

Query: 499  IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
            +  + P D  +   + ++I G + K T+G+ N  GL  V+ R+ G    +     + K+ 
Sbjct: 597  L--LSPKDNGMLIIDGQIIFGVVEKKTVGSSNG-GLIHVVTREKGPQVCAKLFGNIQKVV 653

Query: 559  ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+ ++GFS GI D         +  + I+E  +      KE     L  K G    ++
Sbjct: 654  NFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRES 713

Query: 619  LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
             E  +   LN  R+ AG+    +L   N+   M   GSKGS INI+QM ACVGQQSV G+
Sbjct: 714  FEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGK 773

Query: 679  RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
            R   GF+DR+LPHF +    P +KGFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+
Sbjct: 774  RIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833

Query: 739  TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS-----GEPLNF 793
            TGY+ RRL+KALED+ + YDN+ RN+ G ++QF+YG+DGMD A++E +S     G    F
Sbjct: 834  TGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAF 893

Query: 794  DRL----LMKVKATCPP----AGQRYLSPQQVSEIVEKQLAAYGKES--CSEAFLN---- 839
            ++     L+    T  P    +G   L   ++  +++++     K+     E F++    
Sbjct: 894  EKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEAN 953

Query: 840  -----SLRKFFEGQQ-----DKLDKKIKFVEDI--GWDDKSQILEEVTHKTSGITEKQLE 887
                 ++R+  +  Q     D        ++DI  G  D  + L  +  K   I   Q +
Sbjct: 954  WPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRD 1013

Query: 888  VFIQTC------------FSRYRVKRVEAGTAIGAIGAQ------------------SIG 917
                 C               YR+ +      +  I AQ                  SIG
Sbjct: 1014 AVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIG 1073

Query: 918  EPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECND--NENAARV 975
            EP TQMTL TFHFAGVAS  +T GVPR+KEI+N AK + TP +T  LE     ++  A++
Sbjct: 1074 EPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKL 1133

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ---------------------- 1013
            ++  IE T L  V  + +I       S VI  D E IQ                      
Sbjct: 1134 IRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLL 1193

Query: 1014 ----DAHLCINADI----VKESIVQTPKIKL----KQQHIKVLDFRKLEIFP-PVDKSKI 1060
                D     + D+    V E I QT K  L     + + + L  R   + P  +D    
Sbjct: 1194 RLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETE 1253

Query: 1061 HFELYSLKNV----LPMVIVKGIKTVERVVIAEKEKEKRKVK----ENGEKKKYRLLVEG 1112
              E + LK +    L  + ++G++ +ERVV+    K  RKV     E  ++ ++ L  +G
Sbjct: 1254 AEEDHMLKKIENTMLENITLRGVENIERVVMM---KYDRKVPSPTGEYVKEPEWVLETDG 1310

Query: 1113 TGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMML 1172
              L  VM   GID  +  +N   ++ + LGIEA R  +  E+   + + G  ++ RHM L
Sbjct: 1311 VNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMAL 1370

Query: 1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232
            L D+MT +G +  +TR G  + +   LM  SFE+T + LF A  +   D   GVSE +I+
Sbjct: 1371 LVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVIL 1430

Query: 1233 GIPMPLGTGILKI 1245
            G   P+GTG   +
Sbjct: 1431 GQMAPIGTGAFDV 1443


>gi|357380836|pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
            Dna-Rna Hybrid
 gi|359546290|pdb|4A3B|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
            Dna-Rna Hybrid
 gi|359546308|pdb|4A3D|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
            Dna-Rna Hybrid
 gi|359546325|pdb|4A3E|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546342|pdb|4A3F|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546359|pdb|4A3J|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
            Dna-Rna Hybrid And Soaked With Gmpcpp
 gi|359546376|pdb|4A3K|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
            Dna-Rna Hybrid
 gi|359546392|pdb|4A3L|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546409|pdb|4A3M|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|374977879|pdb|4A3G|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
            Dna-Rna Hybrid
 gi|374977894|pdb|4A3I|A Chain A, Rna Polymerase Ii Binary Complex With Dna
 gi|380764979|pdb|4A93|A Chain A, Rna Polymerase Ii Elongation Complex Containing A Cpd Lesion
          Length = 1732

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 441/1273 (34%), Positives = 662/1273 (52%), Gaps = 142/1273 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L+   +L +FK ++  D   L  +E   RPE +I+T + VPP  +RPS+  + SQ  E+
Sbjct: 201  VLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGED 260

Query: 142  DITERLKRIIQTNASLQQELVEANSA-FKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA 199
            D+T +L  I++ N SL  E +E N A   ++   E+L Q  VA Y+++D+ G P ++Q +
Sbjct: 261  DLTFKLADILKANISL--ETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKS 318

Query: 200  -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
             RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +A+ LTYPE
Sbjct: 319  GRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPE 378

Query: 259  RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
             V+ +NI++L Q ++NGP+++PGA+ +   D   R+     +    ++L+ G  V+RH+ 
Sbjct: 379  VVTPYNIDRLTQLVRNGPNEHPGAKYV-IRDSGDRIDLRYSKRAGDIQLQYGWKVERHIM 437

Query: 319  DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
            D D VLFNRQPSLH+MS+M HR +++P+ T R N SV +PYNADFDGDEMN+HVPQ+EE 
Sbjct: 438  DNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 497

Query: 379  RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
            R E   L  V   + +P++ +  +   QD L     +T +DTF +      M  ++ D  
Sbjct: 498  RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPD-W 556

Query: 439  DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            D V +PTPAI+KP  LW+GKQ+ SV I    +++ +                   DE   
Sbjct: 557  DGV-IPTPAIIKPKPLWSGKQILSVAIPNGIHLQRF-------------------DEGTT 596

Query: 499  IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
            +  + P D  +   + ++I G + K T+G+ N  GL  V+ R+ G    +     + K+ 
Sbjct: 597  L--LSPKDNGMLIIDGQIIFGVVEKKTVGSSNG-GLIHVVTREKGPQVCAKLFGNIQKVV 653

Query: 559  ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+ ++GFS GI D         +  + I+E  +      KE     L  K G    ++
Sbjct: 654  NFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRES 713

Query: 619  LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
             E  +   LN  R+ AG+    +L   N+   M   GSKGS INI+QM ACVGQQSV G+
Sbjct: 714  FEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGK 773

Query: 679  RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
            R   GF+DR+LPHF +    P +KGFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+
Sbjct: 774  RIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833

Query: 739  TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS-----GEPLNF 793
            TGY+ RRL+KALED+ + YDN+ RN+ G ++QF+YG+DGMD A++E +S     G    F
Sbjct: 834  TGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAF 893

Query: 794  DRL----LMKVKATCPP----AGQRYLSPQQVSEIVEKQLAAYGKES--CSEAFLN---- 839
            ++     L+    T  P    +G   L   ++  +++++     K+     E F++    
Sbjct: 894  EKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEAN 953

Query: 840  -----SLRKFFEGQQ-----DKLDKKIKFVEDI--GWDDKSQILEEVTHKTSGITEKQLE 887
                 ++R+  +  Q     D        ++DI  G  D  + L  +  K   I   Q +
Sbjct: 954  WPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRD 1013

Query: 888  VFIQTC------------FSRYRVKRVEAGTAIGAIGAQ------------------SIG 917
                 C               YR+ +      +  I AQ                  SIG
Sbjct: 1014 AVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIG 1073

Query: 918  EPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECND--NENAARV 975
            EP TQMTL TFHFAGVAS  +T GVPR+KEI+N AK + TP +T  LE     ++  A++
Sbjct: 1074 EPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKL 1133

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ---------------------- 1013
            ++  IE T L  V  + +I       S VI  D E IQ                      
Sbjct: 1134 IRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLL 1193

Query: 1014 ----DAHLCINADI----VKESIVQTPKIKL----KQQHIKVLDFRKLEIFP-PVDKSKI 1060
                D     + D+    V E I QT K  L     + + + L  R   + P  +D    
Sbjct: 1194 RLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETE 1253

Query: 1061 HFELYSLKNV----LPMVIVKGIKTVERVVIAEKEKEKRKVK----ENGEKKKYRLLVEG 1112
              E + LK +    L  + ++G++ +ERVV+    K  RKV     E  ++ ++ L  +G
Sbjct: 1254 AEEDHMLKKIENTMLENITLRGVENIERVVMM---KYDRKVPSPTGEYVKEPEWVLETDG 1310

Query: 1113 TGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMML 1172
              L  VM   GID  +  +N   ++ + LGIEA R  +  E+   + + G  ++ RHM L
Sbjct: 1311 VNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMAL 1370

Query: 1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232
            L D+MT +G +  +TR G  + +   LM  SFE+T + LF A  +   D   GVSE +I+
Sbjct: 1371 LVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVIL 1430

Query: 1233 GIPMPLGTGILKI 1245
            G   P+GTG   +
Sbjct: 1431 GQMAPIGTGAFDV 1443


>gi|4398|emb|CAA26904.1| put. RNA polymerase II largest subunit [Saccharomyces cerevisiae]
          Length = 1726

 Score =  635 bits (1639), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 441/1273 (34%), Positives = 662/1273 (52%), Gaps = 142/1273 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L+   +L +FK ++  D   L  +E   RPE +I+T + VPP  +RPS+  + SQ  E+
Sbjct: 201  VLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGED 260

Query: 142  DITERLKRIIQTNASLQQELVEANSA-FKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA 199
            D+T +L  I++ N SL  E +E N A   ++   E+L Q  VA Y+++D+ G P ++Q +
Sbjct: 261  DLTFKLADILKANISL--ETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKS 318

Query: 200  -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
             RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +A+ LTYPE
Sbjct: 319  GRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPE 378

Query: 259  RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
             V+ +NI++L Q ++NGP+++PGA+ +   D   R+     +    ++L+ G  V+RH+ 
Sbjct: 379  VVTPYNIDRLTQLVRNGPNEHPGAKYV-IRDSGDRIDLRYSKRAGDIQLQYGWKVERHIM 437

Query: 319  DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
            D D VLFNRQPSLH+MS+M HR +++P+ T R N SV +PYNADFDGDEMN+HVPQ+EE 
Sbjct: 438  DNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 497

Query: 379  RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
            R E   L  V   + +P++ +  +   QD L     +T +DTF +      M  ++ D  
Sbjct: 498  RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPD-W 556

Query: 439  DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            D V +PTPAI+KP  LW+GKQ+ SV I    +++ +                   DE   
Sbjct: 557  DGV-IPTPAIIKPKPLWSGKQILSVAIPNGIHLQRF-------------------DEGTT 596

Query: 499  IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
            +  + P D  +   + ++I G + K T+G+ N  GL  V+ R+ G    +     + K+ 
Sbjct: 597  L--LSPKDNGMLIIDGQIIFGVVEKKTVGSSNG-GLIHVVTREKGPQVCAKLFGNIQKVV 653

Query: 559  ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+ ++GFS GI D         +  + I+E  +      KE     L  K G    ++
Sbjct: 654  NFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRES 713

Query: 619  LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
             E  +   LN  R+ AG+    +L   N+   M   GSKGS INI+QM ACVGQQSV G+
Sbjct: 714  FEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGK 773

Query: 679  RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
            R   GF+DR+LPHF +    P +KGFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+
Sbjct: 774  RIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833

Query: 739  TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS-----GEPLNF 793
            TGY+ RRL+KALED+ + YDN+ RN+ G ++QF+YG+DGMD A++E +S     G    F
Sbjct: 834  TGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAF 893

Query: 794  DRL----LMKVKATCPP----AGQRYLSPQQVSEIVEKQLAAYGKES--CSEAFLN---- 839
            ++     L+    T  P    +G   L   ++  +++++     K+     E F++    
Sbjct: 894  EKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEAN 953

Query: 840  -----SLRKFFEGQQ-----DKLDKKIKFVEDI--GWDDKSQILEEVTHKTSGITEKQLE 887
                 ++R+  +  Q     D        ++DI  G  D  + L  +  K   I   Q +
Sbjct: 954  WPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRD 1013

Query: 888  VFIQTC------------FSRYRVKRVEAGTAIGAIGAQ------------------SIG 917
                 C               YR+ +      +  I AQ                  SIG
Sbjct: 1014 AVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIG 1073

Query: 918  EPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECND--NENAARV 975
            EP TQMTL TFHFAGVAS  +T GVPR+KEI+N AK + TP +T  LE     ++  A++
Sbjct: 1074 EPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKL 1133

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ---------------------- 1013
            ++  IE T L  V  + +I       S VI  D E IQ                      
Sbjct: 1134 IRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLL 1193

Query: 1014 ----DAHLCINADI----VKESIVQTPKIKL----KQQHIKVLDFRKLEIFP-PVDKSKI 1060
                D     + D+    V E I QT K  L     + + + L  R   + P  +D    
Sbjct: 1194 RLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETE 1253

Query: 1061 HFELYSLKNV----LPMVIVKGIKTVERVVIAEKEKEKRKVK----ENGEKKKYRLLVEG 1112
              E + LK +    L  + ++G++ +ERVV+    K  RKV     E  ++ ++ L  +G
Sbjct: 1254 AEEDHMLKKIENTMLENITLRGVENIERVVMM---KYDRKVPSPTGEYVKEPEWVLETDG 1310

Query: 1113 TGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMML 1172
              L  VM   GID  +  +N   ++ + LGIEA R  +  E+   + + G  ++ RHM L
Sbjct: 1311 VNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMAL 1370

Query: 1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232
            L D+MT +G +  +TR G  + +   LM  SFE+T + LF A  +   D   GVSE +I+
Sbjct: 1371 LVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVIL 1430

Query: 1233 GIPMPLGTGILKI 1245
            G   P+GTG   +
Sbjct: 1431 GQMAPIGTGAFDV 1443


>gi|353251633|pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human
            Vp16-Mediator-Pol Ii-Tfiif Assembly
          Length = 1455

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 441/1274 (34%), Positives = 662/1274 (51%), Gaps = 144/1274 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L+   +L +FK ++  D   L  +E   RPE +I+T + VPP  +RPS+  + SQ  E+
Sbjct: 201  VLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGED 260

Query: 142  DITERLKRIIQTNASLQQELVEANSA-FKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA 199
            D+T +L  I++ N SL  E +E N A   ++   E+L Q  VA Y+++D+ G P ++Q +
Sbjct: 261  DLTFKLADILKANISL--ETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKS 318

Query: 200  -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
             RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +A+ LTYPE
Sbjct: 319  GRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPE 378

Query: 259  RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
             V+ +NI++L Q ++NGP+++PGA+ +   D   R+     +    ++L+ G  V+RH+ 
Sbjct: 379  VVTPYNIDRLTQLVRNGPNEHPGAKYV-IRDSGDRIDLRYSKRAGDIQLQYGWKVERHIM 437

Query: 319  DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
            D D VLFNRQPSLH+MS+M HR +++P+ T R N SV +PYNADFDGDEMN+HVPQ+EE 
Sbjct: 438  DNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 497

Query: 379  RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
            R E   L  V   + +P++ +  +   QD L     +T +DTF +      M  ++ D  
Sbjct: 498  RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPD-W 556

Query: 439  DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            D V +PTPAI+KP  LW+GKQ+ SV I    +++ +                   DE   
Sbjct: 557  DGV-IPTPAIIKPKPLWSGKQILSVAIPNGIHLQRF-------------------DEGTT 596

Query: 499  IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
            +  + P D  +   + ++I G + K T+G+ N  GL  V+ R+ G    +     + K+ 
Sbjct: 597  L--LSPKDNGMLIIDGQIIFGVVEKKTVGSSNG-GLIHVVTREKGPQVCAKLFGNIQKVV 653

Query: 559  ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+ ++GFS GI D         +  + I+E  +      KE     L  K G    ++
Sbjct: 654  NFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRES 713

Query: 619  LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
             E  +   LN  R+ AG+    +L   N+   M   GSKGS INI+QM ACVGQQSV G+
Sbjct: 714  FEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGK 773

Query: 679  RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
            R   GF+DR+LPHF +    P +KGFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+
Sbjct: 774  RIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833

Query: 739  TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS-----GEPLNF 793
            TGY+ RRL+KALED+ + YDN+ RN+ G ++QF+YG+DGMD A++E +S     G    F
Sbjct: 834  TGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAF 893

Query: 794  DRL----LMKVKATCPP----AGQRYLSPQQVSEIVEKQLAAYGKES--CSEAFLN---- 839
            ++     L+    T  P    +G   L   ++  +++++     K+     E F++    
Sbjct: 894  EKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEAN 953

Query: 840  -----SLRKFFEGQQDKL--------DKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQL 886
                 ++R+  +  Q           D  IK +  +G  D  + L  +  K   I   Q 
Sbjct: 954  WPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIV-LGVKDLQENLLVLRGKNEIIQNAQR 1012

Query: 887  EVFIQTC------------FSRYRVKRVEAGTAIGAIGAQ------------------SI 916
            +     C               YR+ +      +  I AQ                  SI
Sbjct: 1013 DAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSI 1072

Query: 917  GEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECND--NENAAR 974
            GEP TQMTL TFHFAGVAS  +T GVPR+KEI+N AK + TP +T  LE     ++  A+
Sbjct: 1073 GEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAK 1132

Query: 975  VVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ--------------------- 1013
            +++  IE T L  V  + +I       S VI  D E IQ                     
Sbjct: 1133 LIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWL 1192

Query: 1014 -----DAHLCINADI----VKESIVQTPKIKL----KQQHIKVLDFRKLEIFP-PVDKSK 1059
                 D     + D+    V E I QT K  L     + + + L  R   + P  +D   
Sbjct: 1193 LRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAET 1252

Query: 1060 IHFELYSLKNV----LPMVIVKGIKTVERVVIAEKEKEKRKVK----ENGEKKKYRLLVE 1111
               E + LK +    L  + ++G++ +ERVV+    K  RKV     E  ++ ++ L  +
Sbjct: 1253 EAEEDHMLKKIENTMLENITLRGVENIERVVMM---KYDRKVPSPTGEYVKEPEWVLETD 1309

Query: 1112 GTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMM 1171
            G  L  VM   GID  +  +N   ++ + LGIEA R  +  E+   + + G  ++ RHM 
Sbjct: 1310 GVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMA 1369

Query: 1172 LLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECII 1231
            LL D+MT +G +  +TR G  + +   LM  SFE+T + LF A  +   D   GVSE +I
Sbjct: 1370 LLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVI 1429

Query: 1232 MGIPMPLGTGILKI 1245
            +G   P+GTG   +
Sbjct: 1430 LGQMAPIGTGAFDV 1443


>gi|259145103|emb|CAY78367.1| Rpo21p [Saccharomyces cerevisiae EC1118]
          Length = 1733

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 440/1273 (34%), Positives = 662/1273 (52%), Gaps = 142/1273 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L+   +L +FK ++  D   L  +E   RPE +I+T + VPP  +RPS+  + SQ  E+
Sbjct: 201  VLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGED 260

Query: 142  DITERLKRIIQTNASLQQELVEANSA-FKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA 199
            D+T +L  I++ N SL  E +E N A   ++   E+L Q  VA Y+++D+ G P ++Q +
Sbjct: 261  DLTFKLADILKANISL--ETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKS 318

Query: 200  -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
             RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +A+ LTYPE
Sbjct: 319  GRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPE 378

Query: 259  RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
             V+ +NI++L Q ++NGP+++PGA+ +   D   R+     +    ++L+ G  V+RH+ 
Sbjct: 379  VVTPYNIDRLTQLVRNGPNEHPGAKYV-IRDSGDRIDLRYSKRAGDIQLQYGWKVERHIM 437

Query: 319  DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
            D D VLFNRQPSLH+MS+M HR +++P+ T R N SV +PYNADFDGDEMN+HVPQ+EE 
Sbjct: 438  DNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 497

Query: 379  RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
            R E   L  V   + +P++ +  +   QD L     +T +DTF +      M  ++ D  
Sbjct: 498  RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPD-W 556

Query: 439  DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            D V +PTPAI+KP  LW+GKQ+ SV I    +++ +                   DE   
Sbjct: 557  DGV-IPTPAIIKPKPLWSGKQILSVAIPSGIHLQRF-------------------DEGTT 596

Query: 499  IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
            +  + P D  +   + ++I G + K T+G+ N  GL  V+ R+ G    +     + K+ 
Sbjct: 597  L--LSPKDNGMLIIDGQIIFGVVEKKTVGSSNG-GLIHVVTREKGPQVCAKLFGNIQKVV 653

Query: 559  ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+ ++GFS GI D         +  + I+E  +      KE     L  K G    ++
Sbjct: 654  NFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRES 713

Query: 619  LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
             E  +   LN  R+ AG+    ++   N+   M   GSKGS INI+QM ACVGQQSV G+
Sbjct: 714  FEDNVVRFLNEARDKAGRLAEVNMKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGK 773

Query: 679  RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
            R   GF+DR+LPHF +    P +KGFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+
Sbjct: 774  RIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833

Query: 739  TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS-----GEPLNF 793
            TGY+ RRL+KALED+ + YDN+ RN+ G ++QF+YG+DGMD A++E +S     G    F
Sbjct: 834  TGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAF 893

Query: 794  DRL----LMKVKATCPP----AGQRYLSPQQVSEIVEKQLAAYGKES--CSEAFLN---- 839
            ++     L+    T  P    +G   L   ++  +++++     K+     E F++    
Sbjct: 894  EKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEAN 953

Query: 840  -----SLRKFFEGQQ-----DKLDKKIKFVEDI--GWDDKSQILEEVTHKTSGITEKQLE 887
                 ++R+  +  Q     D        ++DI  G  D  + L  +  K   I   Q +
Sbjct: 954  WPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRD 1013

Query: 888  VFIQTC------------FSRYRVKRVEAGTAIGAIGAQ------------------SIG 917
                 C               YR+ +      +  I AQ                  SIG
Sbjct: 1014 AVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIG 1073

Query: 918  EPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECND--NENAARV 975
            EP TQMTL TFHFAGVAS  +T GVPR+KEI+N AK + TP +T  LE     ++  A++
Sbjct: 1074 EPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKL 1133

Query: 976  VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ---------------------- 1013
            ++  IE T L  V  + +I       S VI  D E IQ                      
Sbjct: 1134 IRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLL 1193

Query: 1014 ----DAHLCINADI----VKESIVQTPKIKL----KQQHIKVLDFRKLEIFP-PVDKSKI 1060
                D     + D+    V E I QT K  L     + + + L  R   + P  +D    
Sbjct: 1194 RLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETE 1253

Query: 1061 HFELYSLKNV----LPMVIVKGIKTVERVVIAEKEKEKRKVK----ENGEKKKYRLLVEG 1112
              E + LK +    L  + ++G++ +ERVV+    K  RKV     E  ++ ++ L  +G
Sbjct: 1254 AEEDHMLKKIENTMLENITLRGVENIERVVMM---KYDRKVPSPTGEYVKEPEWVLETDG 1310

Query: 1113 TGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMML 1172
              L  VM   GID  +  +N   ++ + LGIEA R  +  E+   + + G  ++ RHM L
Sbjct: 1311 ANLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMAL 1370

Query: 1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232
            L D+MT +G +  +TR G  + +   LM  SFE+T + LF A  +   D   GVSE +I+
Sbjct: 1371 LVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVIL 1430

Query: 1233 GIPMPLGTGILKI 1245
            G   P+GTG   +
Sbjct: 1431 GQMAPIGTGAFDV 1443


>gi|324120542|dbj|BAJ78662.1| RNA polymerase II largest subunit [Oyamia lugubris]
          Length = 1742

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 429/1281 (33%), Positives = 660/1281 (51%), Gaps = 142/1281 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L+   V  + K +TD +C  L +     RP+ +I+T + VPP+++RP+V+M GS  N++
Sbjct: 210  VLSAERVWEILKHITDEECRTLGMDPQFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQD 269

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
            D+T +L  II++N  L +      +A       + LQ  VA  +++D+ G+P +MQ + +
Sbjct: 270  DLTHKLADIIKSNNELIRNEQAGAAAHILSENVKMLQFHVATLVDNDMPGLPRAMQKSGK 329

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            PL     RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ +T+PE V
Sbjct: 330  PLKAIKSRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIV 389

Query: 261  SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
            +  N +K+ + ++ G  +YPGA+ I   +G  R+          + L+ G  V+RH+ DG
Sbjct: 390  TPFNFDKMHELVRRGNSQYPGAKYIVRDNG-ERIDLRFHPKSSDLHLQCGYKVERHIRDG 448

Query: 321  DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
            D+V+FNRQP+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R 
Sbjct: 449  DLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRA 508

Query: 381  EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGM 438
            E   +      + TP+  + ++   QD LT+   +T++D F ++      LM   + DG 
Sbjct: 509  EVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNLLMFLPIWDG- 567

Query: 439  DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
                +P PAILKP  LWTGKQ+FS++I  + NM          +T+S      + ++E  
Sbjct: 568  ---KMPQPAILKPKPLWTGKQVFSLIIPGNVNMI---------RTHST---HPDDEDEGP 612

Query: 499  IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
             + + P D  V   + EL+ G L K TLG  +   L  +   + G          +  + 
Sbjct: 613  YKWISPGDTKVMVEHGELMMGILCKKTLGT-SAGSLLHICYLELGHEVCGQFYGNIQTVI 671

Query: 559  ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+   G SIGI D         +  K I +  E     I++ +  +L+  PG    QT
Sbjct: 672  NNWLLLEGHSIGIGDTIADPNTYMEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQT 731

Query: 619  LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
             E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+
Sbjct: 732  FENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGK 791

Query: 679  RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
            R P GF  R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKTA+
Sbjct: 792  RIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAE 851

Query: 739  TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
            TGY+ RRLIKA+E + + YD +VRN+ G ++Q  YG+DG+    +E ++   +       
Sbjct: 852  TGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTVKLSNKAF 911

Query: 799  KVKATCPPAGQRYLSPQQVSEIVEKQLAAYGK----------ESCSEAFLNSLRKFFEGQ 848
            + +    P  +R+L  +  +E V ++L   G+          + C +    +LR+ F   
Sbjct: 912  ERRFKFDPTNERHLR-RVFNEDVLRELMGSGEVISDLEKEWDQLCKDR--ETLRQIFPSG 968

Query: 849  QDK------LDKKIKFVEDIGWDDKS--------QILEEVT-------------HKTSGI 881
            + K      L++ I  V+ I   +K         +++E VT             H +   
Sbjct: 969  ESKVVLPCNLNRMIWNVQKIFHINKRAPTDLSPLRVIEGVTNLLKKCVIVAGEDHLSKMA 1028

Query: 882  TEKQLEVF--------IQTCFSR-YRVKRVEAGTAIGAI------------------GAQ 914
             E    +F           C S  +R+        IG I                   AQ
Sbjct: 1029 NENATLLFQCLIRSTLCSKCVSEDFRLSSEAFEWLIGEIETRFQQAQVAPGEMVGALAAQ 1088

Query: 915  SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL---ECNDNEN 971
            S+GEP TQMTL TFHFAGV+S N+T GVPR+KEIIN +K+   P +T  L      D E 
Sbjct: 1089 SLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAEK 1148

Query: 972  AARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ------------------ 1013
            A  V+  R+E T L +V  +  I       + VI  D E +                   
Sbjct: 1149 AKNVL-CRLEHTTLRKVTANTAIYYDPDPQNTVIQEDQEFVNVYYEMPDFDPTRISPWLL 1207

Query: 1014 ----DAHLCINADIVKESIVQ------------------TPKIKLKQQHIKVLDFRKLEI 1051
                D     +  +  E I +                    K+ L+ + +   D  + E 
Sbjct: 1208 RIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSEDKFQQEE 1267

Query: 1052 FPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK--- 1104
               VDK +    L  ++ N+L  + ++GI+ + +V +   + + +K   + E+GE K   
Sbjct: 1268 EETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITESGEFKAIA 1327

Query: 1105 KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMS 1164
            ++ L  +GT +  V+    +D  +T SN I E+   LGIEA R  +  E+N  +  +G+ 
Sbjct: 1328 EWLLETDGTSMMKVLSERDVDPIRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLNFYGLY 1387

Query: 1165 IDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIE 1224
            ++ RH+ LL D+MT +G ++ ITR GI + D   LM  SFE+T D L +A+ +   D + 
Sbjct: 1388 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEMDPMA 1447

Query: 1225 GVSECIIMGIPMPLGTGILKI 1245
            GVSE IIMG    LGTG   +
Sbjct: 1448 GVSENIIMGQLPRLGTGCFDL 1468


>gi|154297219|ref|XP_001549037.1| hypothetical protein BC1G_12445 [Botryotinia fuckeliana B05.10]
 gi|347440865|emb|CCD33786.1| similar to DNA-directed RNA polymerase ii largest subunit
            [Botryotinia fuckeliana]
          Length = 1742

 Score =  633 bits (1632), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 435/1301 (33%), Positives = 670/1301 (51%), Gaps = 163/1301 (12%)

Query: 74   ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPS 130
            E   AV      + P   L +F+ MT  + + + L+    RPE ++IT + VPP  +RPS
Sbjct: 200  EDGEAVQPDKRQITPEMALNVFRSMTTAEIQDVGLNADYARPEWMVITVLPVPPPPVRPS 259

Query: 131  VIMDGS---QSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYIN 186
            + MDG+      E+D+T +L  II+ N +++Q   E  S    L  +ETL Q  VA Y++
Sbjct: 260  ISMDGTGQGMRGEDDLTYKLGDIIRANGNVRQAQQEG-SPQHILQDFETLLQYHVATYMD 318

Query: 187  SDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVA 245
            +D+ G P ++Q   RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV 
Sbjct: 319  NDIAGQPPALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVG 378

Query: 246  IPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAV 305
            +P  +ARILTYPE V+  NI+KL Q ++NGPD++PGA+ +   DGT R+     +   A+
Sbjct: 379  VPRSIARILTYPETVTPLNIDKLHQLVKNGPDEHPGAKYVIRSDGT-RIDLRHHKRAGAI 437

Query: 306  ELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDG 365
             L+ G  V+RH+ DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDG
Sbjct: 438  SLEYGWKVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDG 497

Query: 366  DEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRA 425
            DEMN+HVPQT E R E + L  V  N+ +P+    L+   QD L   + I R+D F  + 
Sbjct: 498  DEMNLHVPQTYETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKICRRDVFITKE 557

Query: 426  AFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS 485
                +  ++ D  D V +P PAILKP   WTGKQ+ S++I                    
Sbjct: 558  HLMNILLWVPD-WDGV-IPQPAILKPRPRWTGKQIVSLIIP------------------- 596

Query: 486  NKLIRTEGDEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA 544
             K++ +    + +     P ND     +  +L+ G + K  +G  + +G+  ++  + G 
Sbjct: 597  -KIVNSYNASKDKEHLHAPLNDDGCLIQEGQLMYGLMAKKNVG-ASGNGIVHIVFNEQGP 654

Query: 545  HATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNE 604
             A     N   ++   W+ ++GFSIGI D  P KE  ++  K I++        +++   
Sbjct: 655  DAAMAFFNGCQRVINYWLLHNGFSIGIGDTIPNKETIEQIEKAIAKQKAEVTELVEKATS 714

Query: 605  GKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINIS 664
             +L+  PG +  +T E+ ++  LN  R  AG      L   N+ + M++ GSKGS INIS
Sbjct: 715  NELESLPGMNVRETFESQVSKALNEARNTAGTKTEDGLLDINNAVQMARSGSKGSTINIS 774

Query: 665  QMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMG 724
            QM A VGQQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M 
Sbjct: 775  QMSALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMA 834

Query: 725  GREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
            GREGL+DTAVKTA+TGY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D    E
Sbjct: 835  GREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVIFE 894

Query: 785  GKSGEPLN-----FDRLLM------KVKATCPPAGQRYLSPQQVSEIVEKQLAAY----- 828
             +  + +N     F+ L        ++               +  ++++ + AA      
Sbjct: 895  NQKMDHINISNKAFNDLFKLEVMSERISTDVLEHANELYGDLETQQLLDTEFAALEEDRR 954

Query: 829  ---------GKESCSEAF---------LNSLRKFF---EGQQDKLDKK--IKFVEDIGWD 865
                      KE   + F         ++S ++ F   +G++  L  +  I  V+ +   
Sbjct: 955  LLRDFVHSRTKEKDDDHFQLPLNIIRIIDSAKRLFKTDDGKRSDLHPRDVIPRVQQLL-- 1012

Query: 866  DKSQILEEVTHKTSGITEKQLEVFIQTCF-SRYRVKRVEAGTAIGAIGAQSI-GE----- 918
                I+   T + S   +    +FI+  F SR   KR+  G  +  +  + I GE     
Sbjct: 1013 -DRMIIVRGTDELSVEAQYNATIFIKAQFRSRLAYKRIALGMHLNKLAFEHILGELESRF 1071

Query: 919  ------PG---------------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRIST 957
                  PG               TQMTL TFHF G++S N+T GVPR+KEI+N A  I T
Sbjct: 1072 TRALVNPGEMVGVLAAQSIGEPATQMTLNTFHFTGISSKNVTLGVPRLKEILNIAPNIKT 1131

Query: 958  P-IITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAH 1016
            P +I  +   N N+  A++++  +E T L  V  + +I     + S  I  D++ ++   
Sbjct: 1132 PSMIVYQDGANANQETAKLLRSAVEHTTLRSVTYATEIYHDPDIQSTTIEDDVDMVESYF 1191

Query: 1017 LCINADIVKESIVQTP-------------KIKLKQQHIKVLDFR-KLEIFPPVDKSKIHF 1062
                  I+ E    +P             + K+  + +KV D   K++   P D + I  
Sbjct: 1192 ------IIPEEHHDSPDNQSRWLLRLILDRQKMLDKGLKVDDVAIKIKENYPKDLAVIFS 1245

Query: 1063 ELYSLKNVLPMVIVK-------------------------------GIKTVERVVIAEK- 1090
            +  + + V+ + ++K                               G+  ++R  + +  
Sbjct: 1246 DNNAEQQVIRIRMIKQSDSKYDDDDIEEDIMLKRLEAHILDTLTLRGVLGIDRAFLNKDV 1305

Query: 1091 ---EKEKRKVKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
               EK   ++  + E K   ++ L   GT L+ V+   G+D  +T SNH  +V +  GIE
Sbjct: 1306 KLFEKPDGRLVASREDKDCEEWYLDTSGTSLKDVLIVPGVDPRRTYSNHFIQVFEVFGIE 1365

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  ++ E+   +   G  ++ RH+ LL D+MT RG ++ ITR GI + D   LM  SF
Sbjct: 1366 AARSALMRELTMVLAFDGSYVNHRHLALLTDIMTSRGHLMAITRHGINRADTGALMRCSF 1425

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+  G  D   G+SE +++G   P+GTG + +
Sbjct: 1426 EETVEILLEAAAVGELDDCRGISENVMLGQLAPMGTGEMDV 1466


>gi|156054160|ref|XP_001593006.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980]
 gi|154703708|gb|EDO03447.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1746

 Score =  630 bits (1626), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 435/1301 (33%), Positives = 670/1301 (51%), Gaps = 163/1301 (12%)

Query: 74   ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPS 130
            E   AV      + P   L +F+ M+  + + + L+    RPE +IIT + VPP  +RPS
Sbjct: 200  EDGEAVQPDKRQITPDMALNVFRSMSTAEIQDVGLNADYARPEWMIITVLPVPPPPVRPS 259

Query: 131  VIMDGS---QSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYIN 186
            + MDG+      E+D+T +L  II+ N +++Q   E  S    L  +ETL Q  VA Y++
Sbjct: 260  ISMDGTGQGMRGEDDLTYKLGDIIRANGNVRQAQQEG-SPQHILQDFETLLQYHVATYMD 318

Query: 187  SDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVA 245
            +D+ G P ++Q + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV 
Sbjct: 319  NDIAGQPPALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVG 378

Query: 246  IPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAV 305
            +P  +ARILTYPE V+  NI+KL Q ++NGPD++PGA+ +   DGT R+     +   A+
Sbjct: 379  VPRSIARILTYPETVTPLNIDKLHQLVKNGPDEHPGAKYVIRSDGT-RIDLRHHKRAGAI 437

Query: 306  ELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDG 365
             L+ G  V+RH+ DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDG
Sbjct: 438  SLEYGWKVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDG 497

Query: 366  DEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRA 425
            DEMN+HVPQT E R E + L  V  N+ +P+    L+   QD L   + I R+D F  + 
Sbjct: 498  DEMNLHVPQTYETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKICRRDVFITKE 557

Query: 426  AFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS 485
                +  ++ D  D V +P PAILKP   WTGKQ+ S++I                    
Sbjct: 558  HLMNILLWVPD-WDGV-IPQPAILKPRPRWTGKQIVSLIIP------------------- 596

Query: 486  NKLIRTEGDEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA 544
             K++ +    + +     P ND     +  +L+ G + K  +G  + +G+  ++  + G 
Sbjct: 597  -KIVNSYNASKDKEHLHAPLNDDGCLIQEGQLMYGLMAKKNVG-ASGNGIVHIVFNEQGP 654

Query: 545  HATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNE 604
             A     N   ++   W+ ++GFSIGI D  P KE  ++  K I++        +++   
Sbjct: 655  DAAMAFFNGCQRVINYWLLHNGFSIGIGDTIPNKETIEQIEKAIAKQKAEVTELVEKATS 714

Query: 605  GKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINIS 664
             +L+  PG +  +T E+ ++  LN  R  AG      L   N+ + M++ GSKGS INIS
Sbjct: 715  NELESLPGMNVRETFESQVSKALNEARNTAGTKTEDGLLDINNAVQMARSGSKGSTINIS 774

Query: 665  QMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMG 724
            QM A VGQQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M 
Sbjct: 775  QMSALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMA 834

Query: 725  GREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
            GREGL+DTAVKTA+TGY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D    E
Sbjct: 835  GREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVIFE 894

Query: 785  GKSGEPLN-----FDRLLM------KVKATCPPAGQRYLSPQQVSEIVEKQLAAY----- 828
             +  + +N     F+ L        ++               +  ++++ + AA      
Sbjct: 895  NQKMDHINISNKAFNDLFKLEVMSERISTDVLEHANELYGDLETQQLLDAEFAALEEDRR 954

Query: 829  ---------GKESCSEAF---------LNSLRKFF---EGQQDKLDKK--IKFVEDIGWD 865
                      KE   + F         ++S ++ F   +G++  L  +  I  V+ +   
Sbjct: 955  ILRDFVHSRTKEKDDDHFQLPLNIIRIIDSAKRLFKTDDGKRSDLHPRDVIPRVQQLL-- 1012

Query: 866  DKSQILEEVTHKTSGITEKQLEVFIQTCF-SRYRVKRVEAGTAIGAIGAQSI-GE----- 918
                I+   T + S   +    +FI+  F SR   KR+  G  +  +  + I GE     
Sbjct: 1013 -DRMIIVRGTDELSVEAQYNATIFIKAQFRSRLAYKRIALGMHLNKLAFEHILGELETRF 1071

Query: 919  ------PG---------------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRIST 957
                  PG               TQMTL TFHF G++S N+T GVPR+KEI+N A  I T
Sbjct: 1072 TRALVNPGEMVGVLAAQSIGEPATQMTLNTFHFTGISSKNVTLGVPRLKEILNIAPNIKT 1131

Query: 958  P-IITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAH 1016
            P +I  +   N N+  A++++  +E T L  V  + +I     + S  I  D++ ++   
Sbjct: 1132 PSMIVYQDGPNANQETAKLLRSAVEHTTLRSVTYATEIYHDPDIQSTTIEDDIDMVESYF 1191

Query: 1017 LCINADIVKESIVQTP-------------KIKLKQQHIKVLDFR-KLEIFPPVDKSKIHF 1062
                  I+ E    +P             + K+  + +KV D   K++   P D + I  
Sbjct: 1192 ------IIPEEHHDSPDNQSRWLLRLILDRQKMLDKGLKVDDVAIKIKENYPKDLAVIFS 1245

Query: 1063 ELYSLKNVLPMVIVK-------------------------------GIKTVERVVIAEK- 1090
            +  + + V+ + ++K                               G+  ++R  + +  
Sbjct: 1246 DNNAEQQVIRIRMIKQSDSKYDDDDIEEDIMLKRLEAHILDTLTLRGVLGIDRAFLNKDV 1305

Query: 1091 ---EKEKRKVKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
               EK   ++  + E K   ++ L   GT L+ V+   G+D  +T SNH  +V    GIE
Sbjct: 1306 KLFEKPDGRLVASREDKDCEEWYLDTSGTSLKEVLTVPGVDPRRTYSNHFIQVFVVFGIE 1365

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  ++ E+   +   G  ++ RH+ LL D+MT RG ++ ITR GI + D   LM  SF
Sbjct: 1366 AARSALMRELTMVLAFDGSYVNHRHLALLTDIMTSRGHLMAITRHGINRADTGALMRCSF 1425

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+  G  D   G+SE +++G   P+GTG + +
Sbjct: 1426 EETVEILLEAAAVGELDDCRGISENVMLGQLAPMGTGEMDV 1466


>gi|337263122|gb|AEI69272.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
            hellem]
          Length = 1478

 Score =  629 bits (1622), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 433/1313 (32%), Positives = 675/1313 (51%), Gaps = 171/1313 (13%)

Query: 80   NVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGS 136
            N    +LN   V  +FK+++D DC  +       RPE +I+T + VPP ++RPS++M+GS
Sbjct: 167  NEGKVMLNGERVYSIFKKISDEDCVYMGFDLKYSRPEWMILTVLLVPPPSVRPSIVMEGS 226

Query: 137  QSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
               E+D+T +L  II++N  L++   E           + LQ  VA  I++D+ G P ++
Sbjct: 227  LRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATLIDNDIGGQPQAL 286

Query: 197  QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            Q + RPL     RLKGK+GR RGNL GKRV+++ RTVI+PDPN+ + EV +P+ +A+I T
Sbjct: 287  QKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPNISLEEVGVPLEVAKIHT 346

Query: 256  YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
            +PE+V+  NI++L + ++ GP+++PGA  +   DG    L   F N+  ++L+ G +V+R
Sbjct: 347  FPEKVTSFNIDRLEKLVRTGPNEHPGANYVLRSDGQKIDL--NF-NKSDIKLEEGYVVER 403

Query: 316  HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
            H++ GDVVLFNRQPSLH+MS+M H AR+M  +T R N SV +PYNADFDGDEMN+H+PQ+
Sbjct: 404  HMQTGDVVLFNRQPSLHKMSMMAHYARVMDDKTFRLNLSVTSPYNADFDGDEMNLHMPQS 463

Query: 376  EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
              ++ E   L  V   + +P++ + ++   QD LT   L T +DTF +     L+   + 
Sbjct: 464  YTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMLLLYAVN 523

Query: 436  D-------------GMDRVD-------LPTPAILKPVELWTGKQLFSVLIRPHANMRVYV 475
                          G+ R         L  PAI KP+ LWTGKQ+ S ++ P+ N   Y 
Sbjct: 524  IEFCDTPPGSTGYIGLRRTKDYDIMKVLKRPAIAKPMRLWTGKQILSFVL-PNMN---YT 579

Query: 476  NLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLY 535
              + +           E  E I    +   DG+++       SG + K   G   + GL 
Sbjct: 580  GFSSEHND--------EDSENINDTKVIIQDGYIH-------SGVIDKKAAG-ATQGGLV 623

Query: 536  SVLLRDYGAHATSGCMNRLAKLSARWI-GNHGFSIGIDDVQPKKELSDKKGKLISENYEV 594
             ++  D+G    +   N + ++   ++ G H FSIGI D     +      + I +  E 
Sbjct: 624  HIIFNDFGPKRAAQFFNGVQRMINVFMTGIHTFSIGIGDTIADAKTVKMVEEAIRKAKEE 683

Query: 595  CNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQC 654
             +V I+   + +L+  PG    ++ E+ +  +LNR R+ +G +   SL   N+   M   
Sbjct: 684  VSVIIENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSGNNNMKTMVLA 743

Query: 655  GSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLS 714
            GSKGS INISQ+ ACVGQQ+V G+R P GF  R+LPHF +      ++GFV NS+ +GL 
Sbjct: 744  GSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGRSRGFVENSYLTGLD 803

Query: 715  ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYG 774
              EFFFH MGGREGL+DTA+KTA+TGY+ RRL+KALED  ++ D SVR+  G + Q  YG
Sbjct: 804  PEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVYQVKYG 863

Query: 775  DDGMDPANMEGKSGEPLNFDRLLMKVKATCPPA---GQRYLSPQQVSEIVEKQLAAYG-- 829
            +DG D   +E +  +  NF       K  C      G+  ++  QVSE V   L++    
Sbjct: 864  EDGFDATFLESQKVDVKNF------AKRYCIDMFGDGKLAITQGQVSEEVYGMLSSDVDL 917

Query: 830  KESCSEAFLNSLRKFFEG-----------QQDKLDKKI--------------------KF 858
            ++   + +   + + FEG           +QD   K++                     F
Sbjct: 918  QKLLDQEYEWLVGEIFEGPPPISPGEIDIEQDYQVKEVYKSAVMSPCNFTRLLATAKRAF 977

Query: 859  VEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRV------------------- 899
               +G      ILE   HK    + K L V I+T  +  RV                   
Sbjct: 978  HLSVGDVSPYYILE--AHKNLMTSNKILNVLIRTNLNVKRVLIEHKLNTEAFNWVVEMTK 1035

Query: 900  -----KRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
                  R+     +G + AQS+GEP TQMTL TFH AGV+S  +T GVPR+KEI N  K 
Sbjct: 1036 AKILKARITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSS-TVTMGVPRLKEIFNVTKN 1094

Query: 955  ISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
            + TP +   L+   C   E +A+ ++  IE   +  +  S +I     +    I  D + 
Sbjct: 1095 LKTPSMKIYLDKDHCKTIE-SAKAIQNEIECLCVKDLCLSSEIYYDPEITGTEIDEDKDF 1153

Query: 1012 IQ--------DAHL-CINADIVK---------------ESIVQTPKIKLKQ-QHIKVLDF 1046
            ++        D    C++  +++               E +  + K +L    H+   D 
Sbjct: 1154 VETYFEFPDDDVDFSCLSPFLIRLIVDRAKLIGRGTNMEYVAASIKKELGNGAHVICSDE 1213

Query: 1047 RKLEIFPPV-----DKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENG 1101
              +++   V     D   ++F    L  +L + +  G K V++V I+E +          
Sbjct: 1214 NAVDLVIRVRITKSDDESLNFYTTVLNTLLKLQL-GGYKNVKKVYISEDK---------- 1262

Query: 1102 EKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAH 1161
            +++++ L  +G  L  V+G   ++   T SN + E+ +TLGIEAAR  I+ E+   +  +
Sbjct: 1263 DRREWYLQTDGICLPQVLGNPAVNSRLTVSNDLIEIAETLGIEAARESILRELAIVIDGN 1322

Query: 1162 GMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD 1221
            G  ++ RHM LLAD+MT RG + GITR G+ K     L  +SFE+T + L +A++    +
Sbjct: 1323 GSYVNYRHMSLLADVMTMRGYLCGITRHGVNKAGAGALKRSSFEETVEILLDAALVSEKN 1382

Query: 1222 RIEGVSECIIMGIPMPLGTG----ILKIRQRD-AVP---PMLKYGAP-DPIMS 1265
               G++E I+MG   P+GTG    +L +++ D A+P   P+ K   P  P++S
Sbjct: 1383 LCRGITENIMMGQLAPMGTGNVEIMLDVKKLDKAIPLSNPVFKPNDPVTPMIS 1435


>gi|403215001|emb|CCK69501.1| hypothetical protein KNAG_0C03970 [Kazachstania naganishii CBS 8797]
          Length = 1721

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 439/1279 (34%), Positives = 669/1279 (52%), Gaps = 154/1279 (12%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L+   +L +FK ++  D   L  +E   RPE +I+T + VPP  +RPS+  + SQ  E+
Sbjct: 200  VLSTEEILNIFKHISTEDFIRLGFNEEFSRPEWMILTVLPVPPPPVRPSISFNESQRGED 259

Query: 142  DITERLKRIIQTNASLQQELVEANSA-FKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA 199
            D+T +L  I++ N SL  E +E N A   ++   E+L Q  VA Y+++D+ G P ++Q +
Sbjct: 260  DLTFKLADILKANISL--ETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKS 317

Query: 200  -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
             RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +AR LTYPE
Sbjct: 318  GRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPE 377

Query: 259  RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
             V+ +NI++L Q ++NGP+++PGA+ +   +G  R+     +    V+L+ G  V+RH+ 
Sbjct: 378  VVTPYNIDRLTQLVRNGPNEHPGAKYVIRENGD-RIDLRYSKRAGDVQLQYGWKVERHIM 436

Query: 319  DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
            D D VLFNRQPSLH+MS+M H+ +++P+ T R N SV +PYNADFDGDEMN+HVPQ+EE 
Sbjct: 437  DDDPVLFNRQPSLHKMSMMAHKVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 496

Query: 379  RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
            R E   L  V   + +P++ +  +   QD L    ++T +DTF +      M  ++ D  
Sbjct: 497  RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRILTLRDTFLELDHVLNMLYWVPD-W 555

Query: 439  DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            D V +PTPAILKP  LWTGKQ+ SV I    +++ +                   DE   
Sbjct: 556  DGV-IPTPAILKPKPLWTGKQILSVAIPNGIHLQRF-------------------DEGTT 595

Query: 499  IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
            +  + P D  +   + ++I G + K T+G+ +  GL  V+ R+ G    +     + K+ 
Sbjct: 596  L--LSPKDNGMLIIDGQIIFGVVDKKTVGSSSG-GLIHVVTREKGPQTCARLFGNIQKVV 652

Query: 559  ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              W+ ++GFS GI D         +  + I+E  +      KE     L  K G    ++
Sbjct: 653  NFWLLHNGFSTGIGDTIADGATIKEITETIAEAKKKVEEVTKEAQANLLTAKHGMTLRES 712

Query: 619  LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
             E  +   LN  R+ AG+    +L   N    M   GSKGS INI+QM ACVGQQSV G+
Sbjct: 713  FEDNVVRFLNEARDKAGRLAEVNLNDTNFVKQMVSAGSKGSFINIAQMSACVGQQSVEGK 772

Query: 679  RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
            R   GF+DR+LPHF +    P +KGFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+
Sbjct: 773  RIGFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 832

Query: 739  TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS-----GEPLNF 793
            TGY+ RRL+KALED+ + YDN+ RN+ G ++QF+YG+DG+D + +E +S     G    F
Sbjct: 833  TGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGIDASYIEKQSLDTIGGSDAAF 892

Query: 794  DRL----LMKVKATCPP----AGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLN------ 839
            ++     LM V+ +  P    +G       ++  +++++     K+    AFL       
Sbjct: 893  EKKYRIDLMNVQNSLDPTLLESGSEITGDLKLQTLLDEEYKQLVKD---RAFLRNVFVDG 949

Query: 840  --------SLRKFFEGQQDKL--------DKKIKFVEDIGWDDKSQILEEVTHKTSGITE 883
                    ++R+  +  Q           D  I+ + D   + +S++L  V    S I E
Sbjct: 950  ESNWPLPVNIRRIIQNAQQTFRIDHSKPSDLTIRDIIDSVNELQSKLL--VLRGKSEIIE 1007

Query: 884  K-QLEVFIQTC------------FSRYRVKRVEAGTAIGAIGAQ---SIGEPG------- 920
            + Q +     C               YR+ +      +  I AQ   S+  PG       
Sbjct: 1008 RAQTDAVTLFCCLVRSRLATRRVLKEYRLTKEAFNWVLNNIEAQFLRSVVHPGEMVGVLA 1067

Query: 921  --------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDNE 970
                    TQMTL TFHFAGVAS  +T GVPR+KEI+N AK + TP +T  L  + + ++
Sbjct: 1068 AQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLKDDYSSDQ 1127

Query: 971  NAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESI-V 1029
              A++++  IE T L  V  + +I       S VI  D E IQ  H  +  D ++ S+  
Sbjct: 1128 EKAKLIRSAIEHTTLKSVTVASEIYYDPDPRSTVIEEDEEIIQ-LHFSLLDDEMESSLDQ 1186

Query: 1030 QTP---KIKLKQQHIKVLDF-------RKLEIF-------------------------PP 1054
            Q+P   +++L +  +   D        R  E F                           
Sbjct: 1187 QSPWLLRLELDRAAMNDKDLTMGQVGERIKETFKNDLFVIWSEDNAEKLIIRCRVVRPKS 1246

Query: 1055 VDKSKIHFELYSLKNV----LPMVIVKGIKTVERVVIAEKEKEKRKV-KENGEKKK---Y 1106
            +D      E + LK +    L  + ++G++ +ERVV+    K  RKV  E+GE +K   +
Sbjct: 1247 LDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMM---KYDRKVPNESGEYQKVPEW 1303

Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  +G  L  VM   G+D  +  +N   ++ + LGIEA R  +  E+   + + G  ++
Sbjct: 1304 VLESDGVNLAEVMQVPGVDATRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVN 1363

Query: 1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
             RHM LL D+MT +G +  +TR G  + +   LM  SFE+T + LF A      D   GV
Sbjct: 1364 YRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGAAAELDDCRGV 1423

Query: 1227 SECIIMGIPMPLGTGILKI 1245
            SE +++G   P+GTG   +
Sbjct: 1424 SENVLLGQMAPIGTGAFDV 1442


>gi|401825605|ref|XP_003886897.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
            50504]
 gi|392998054|gb|AFM97916.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
            50504]
          Length = 1557

 Score =  626 bits (1615), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 436/1315 (33%), Positives = 678/1315 (51%), Gaps = 175/1315 (13%)

Query: 80   NVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGS 136
            N    +LN   V  +FK+++D DC  +       RPE +I+T + VPP ++RPS++M+GS
Sbjct: 167  NEGKVMLNGERVYSIFKKISDEDCVYMGFDLKYSRPEWMILTVLLVPPPSVRPSIVMEGS 226

Query: 137  QSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
               E+D+T +L  II++N  L++   E           + LQ  VA  I++D+ G P ++
Sbjct: 227  LRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATLIDNDIGGQPQAL 286

Query: 197  QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            Q + RPL     RLKGK+GR RGNL GKRV+++ RTVI+PDPNL + EV +P+ +A+I T
Sbjct: 287  QKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLSLEEVGVPLEVAKIHT 346

Query: 256  YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
            +PE+V+  NI++L + ++ GP+++PGA  +   DG    L   F N+  ++L+ G +V+R
Sbjct: 347  FPEKVTSFNIDRLEKLVRTGPNEHPGANYVLRSDGQKIDL--NF-NKSDIKLEEGYVVER 403

Query: 316  HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
            H++ GDVVLFNRQPSLH+MS+M H AR+M  +T R N SV +PYNADFDGDEMN+H+PQ+
Sbjct: 404  HMQTGDVVLFNRQPSLHKMSMMAHYARVMDDKTFRLNLSVTSPYNADFDGDEMNLHMPQS 463

Query: 376  EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMC---- 431
              ++ E   L  V   + +P++ + ++   QD LT   L T +DTF +     L+     
Sbjct: 464  YTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMLLLYAVN 523

Query: 432  ---C--------YMG-------DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRV 473
               C        Y+G       D M    L  PAI KP+ LWTGKQ+ S ++ P+ N   
Sbjct: 524  IEFCDTPPGSTGYIGFRRTKDYDIMKV--LKRPAIAKPMRLWTGKQILSFVL-PNMN--- 577

Query: 474  YVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDG 533
            Y   + +           E  E I    +   DG+++   S +I  +   AT G     G
Sbjct: 578  YTGFSSEHND--------EDSENINDTKVIIQDGYIH---SGVIDKKAAGATQG-----G 621

Query: 534  LYSVLLRDYGAHATSGCMNRLAKLSARWI-GNHGFSIGIDDVQPKKELSDKKGKLISENY 592
            L  ++  D+G    +   N + ++   ++ G H FSIGI D     +      + I +  
Sbjct: 622  LVHIIFNDFGPKRAAQFFNGVQRMINVFMTGIHTFSIGIGDTIADAKTVKMVEEAIRKAK 681

Query: 593  EVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMS 652
            E  +V I+   + +L+  PG    ++ E+ +  +LNR R+ +G +   SL   N+   M 
Sbjct: 682  EEVSVIIENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSGNNNMKTMV 741

Query: 653  QCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSG 712
              GSKGS INISQ+ ACVGQQ+V G+R P GF  R+LPHF +      ++GFV NS+ +G
Sbjct: 742  LAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGRSRGFVENSYLTG 801

Query: 713  LSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFL 772
            L   EFFFH MGGREGL+DTA+KTA+TGY+ RRL+KALED  ++ D SVR+  G + Q  
Sbjct: 802  LDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVYQVK 861

Query: 773  YGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPA---GQRYLSPQQVSEIVEKQLAAYG 829
            YG+DG D   +E +  +  NF       K  C      G+  ++  QVSE V   L++  
Sbjct: 862  YGEDGFDATFLESQKVDVKNF------AKRYCIDMFGDGKLAITQGQVSEEVYGMLSSDV 915

Query: 830  --KESCSEAFLNSLRKFFEG-----------QQDKLDKKI-------------------- 856
              ++   + +   + + FEG           ++D   K++                    
Sbjct: 916  DLQKLLDQEYEWLVGEIFEGPPPISPGEIDIERDYQVKEVYKSAVMSPCNFTRLLATAKR 975

Query: 857  KFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRV----------------- 899
             F   +G      ILE   H+    + K L V I+T  +  RV                 
Sbjct: 976  AFHLSVGDVSPYYILE--AHRNLMTSNKILNVLIRTNLNVKRVLLEHKLNTEAFNWVVEM 1033

Query: 900  -------KRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGA 952
                    R+     +G + AQS+GEP TQMTL TFH AGV+S  +T GVPR+KEI N  
Sbjct: 1034 TKAKILKARITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSS-TVTMGVPRLKEIFNVT 1092

Query: 953  KRISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDM 1009
            K + TP +   L+   C   E +A+ ++  IE   +  +  S +I     +    I  D 
Sbjct: 1093 KNLKTPSMKIYLDKDHCKTIE-SAKAIQNEIECLCVKDLCLSSEIYYDPEITGTEIDEDK 1151

Query: 1010 ETIQ--------DAHL-CINADIVK---------------ESIVQTPKIKLKQ-QHIKVL 1044
            + ++        D    C++  +++               E +  + K +L    H+   
Sbjct: 1152 DFVETYFEFPDDDVDFSCLSPFLIRLIVDRAKLIGRGTNMEYVAASIKKELGNGAHVICS 1211

Query: 1045 DFRKLEIFPPV-----DKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKE 1099
            D   +++   V     D   ++F    L  +L + +  G K V++V I+E +        
Sbjct: 1212 DENAVDLVIRVRITKSDDESLNFYTTVLNTLLKLQL-GGYKNVKKVYISEDK-------- 1262

Query: 1100 NGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMK 1159
              +++++ L  +G  L  V+G   ++   T SN + E+ +TLGIEAAR  I+ E+   + 
Sbjct: 1263 --DRREWYLQTDGICLPQVLGNPAVNSRLTVSNDLIEIAETLGIEAARESILRELAIVID 1320

Query: 1160 AHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGR 1219
             +G  ++ RHM LLAD+MT RG + GITR G+ K     L  +SFE+T + L +A++   
Sbjct: 1321 GNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKAGAGALKRSSFEETVEILLDAALVSE 1380

Query: 1220 DDRIEGVSECIIMGIPMPLGTG----ILKIRQRD-AVP---PMLKYGAP-DPIMS 1265
             +   G++E I+MG   P+GTG    +L +++ D A+P   P+ K   P  P++S
Sbjct: 1381 KNLCRGITENIMMGQLAPMGTGNVEIMLDVKKLDKAIPLSNPVFKPNDPVTPMIS 1435


>gi|395326417|gb|EJF58827.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Dichomitus squalens LYAD-421 SS1]
          Length = 1749

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 436/1282 (34%), Positives = 665/1282 (51%), Gaps = 154/1282 (12%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDG-SQSNE 140
            +  P  V    K+++++D  +L LS    RPE +I+T + VPP  +RPS+ +DG +  +E
Sbjct: 209  LFPPHEVYTALKKISESDLHLLGLSVDYARPEWMILTVLPVPPPPVRPSIAVDGGTMRSE 268

Query: 141  NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA- 199
            +D+T +L  II+ +A++++   E   A       + LQ  VA Y+++D+ G+P ++Q + 
Sbjct: 269  DDLTYKLGDIIKASANVRRCEQEGAPAHVINEFEQLLQFHVATYMDNDIAGIPQALQKSG 328

Query: 200  RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
            RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ EV +P  +A  LT+PER
Sbjct: 329  RPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTFPER 388

Query: 260  VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
            V+ +NI  L++ ++NGP  YPGAR +    G    L  ++  +    L+ G IV+RHL+D
Sbjct: 389  VTPYNIAYLQELVRNGPTVYPGARYVVRDTGERIDL--RYNKRADAFLQYGWIVERHLKD 446

Query: 320  GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
            GD VLFNRQPSLH+MS+M HR R+MP+ T R N SV  PYNADFDGDEMNMHVPQ+EE R
Sbjct: 447  GDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETR 506

Query: 380  TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
             E   +  V   + +P+  + ++   QD L      T +DTF D      +  ++ D   
Sbjct: 507  AELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDG 566

Query: 440  RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
             V  PTPAI+KP  +WTGKQL S+ I P       +N+       SN  +  +G      
Sbjct: 567  TV--PTPAIIKPKPMWTGKQLLSMCI-PRG-----INIFRAPDPKSNNPVFDDG------ 612

Query: 500  ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
                     +   N +++ G + K T+G  ++ GL  V+ R+ G  AT      L ++  
Sbjct: 613  ---------MMIENGDIVFGVVEKKTVG-ASQGGLVHVVFREKGPEATRTLFTGLQQVVN 662

Query: 560  RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYE-VCNVKIKEYNEGKLQLKPGCDAAQT 618
             W+ ++GFSIGI D    +   D   K I+E  + V  +    Y++ +L+  PG    ++
Sbjct: 663  YWLFHNGFSIGIGDTIADRGTMDYIQKQIAERKQNVLQIMDDAYHD-RLRPSPGMTIRES 721

Query: 619  LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
             E  +   LN  R+ +G+     L   N+   M   GSKGS INISQM  CVGQQSV G+
Sbjct: 722  FEKKVERELNLARDHSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGK 781

Query: 679  RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
            R P GF  R+LPHF +    P A+GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+
Sbjct: 782  RIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 841

Query: 739  TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQ---------------------------- 770
            TGY+ RRL+KALED+ + YD +VRN+ G ++Q                            
Sbjct: 842  TGYIQRRLVKALEDVQVCYDGTVRNSLGDLIQFIYGEDGMDGAFIERQNIETFALNNTQF 901

Query: 771  --------------FLYG--DDGMDPANMEGKSGEPLNF-----DRLLMK--VKATCPPA 807
                          FL G    G+D +++E ++     F     DR L++  +  +  PA
Sbjct: 902  EHDFRVDVTDPQGGFLPGVLQAGLDDSSLELQAKLDEEFAQLTEDRQLLRTWIFPSTDPA 961

Query: 808  GQRYLSPQQVSEIVEKQLAAYG----KESCSEA--FLNSLRKFF--------EG---QQD 850
              RYL P  +  IV+  +  +     K S  E    ++S+R+          EG   ++ 
Sbjct: 962  APRYL-PVNLQRIVQNAIQIFHIDRRKPSDLEPTYIIDSVRELCNRLVVVRGEGSLSKEA 1020

Query: 851  KLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGA 910
            +L+  + F   +     ++ + E  H    +  +  E  +    +++       G   G 
Sbjct: 1021 QLNATLLFRMHLRATFATRRVLERYH----LNREAFEWVLGEVETKFNQAVAHPGEMCGT 1076

Query: 911  IGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNE 970
            + AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEIIN A  I TP +   LE     
Sbjct: 1077 LAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLNVYLEPEFAR 1136

Query: 971  NA--ARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESI 1028
            +A  A+ V+  +  T L  V  +++I      +S +I  D + +       + ++ ++  
Sbjct: 1137 DALLAKNVQQELAFTSLRTVTAAVEIWYDPDPSSTIIPDDEDFVHAFFAIPDEEVEQKLH 1196

Query: 1029 VQTPKI-KLKQQHIKVLDFRKLEIFPPVDKSKIHFE------------------------ 1063
            + +P + +L+    K++D RKL +    ++    F+                        
Sbjct: 1197 LMSPWLLRLELDRAKMID-RKLTMTYVANRIAQSFKTDLFVIWSEDNSEKLVVRCRVLGG 1255

Query: 1064 ----------------LYSLKN-VLPMVIVKGIKTVERVVIAEKEK---EKRKVKENGEK 1103
                            L  L+N +L  V ++G+  ++R  + E +K         E   +
Sbjct: 1256 ADKDEDDLGQVEEDIFLRQLENTMLNSVELRGVPGIQRAFLLEHDKINISPTGSIEARSE 1315

Query: 1104 KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGM 1163
            K++ L  +G  L+ VM  +G+D  +T SN+  EV   LGIEAAR  I+ E+   ++  G 
Sbjct: 1316 KEWVLETDGVNLKTVMCIDGVDFKRTYSNNCVEVFDVLGIEAARAAIMKELRNVIEFDGS 1375

Query: 1164 SIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRI 1223
             ++ RH+ LL DLMT RG ++ ITR GI + D   LM  SFE+T + L  A+  G  D  
Sbjct: 1376 YVNYRHLALLCDLMTHRGTLMAITRHGINRADTGALMRCSFEETVEILMEAAAVGEKDDC 1435

Query: 1224 EGVSECIIMGIPMPLGTGILKI 1245
             G++E I+ G   P+GTG  ++
Sbjct: 1436 HGIAENILFGQMAPMGTGAFEV 1457


>gi|241959608|ref|XP_002422523.1| DNA-directed RNA polymerase II subunit, putative [Candida
            dubliniensis CD36]
 gi|223645868|emb|CAX40531.1| DNA-directed RNA polymerase II subunit, putative [Candida
            dubliniensis CD36]
          Length = 1735

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 447/1293 (34%), Positives = 668/1293 (51%), Gaps = 188/1293 (14%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L P  +L +FK ++  DC  +  +E   RPE ++IT + VPP  +RPS+  + +   E+
Sbjct: 201  LLTPSEILNVFKHISPEDCHKMGFNEDYARPEWMLITVLPVPPPPVRPSIAFNETARGED 260

Query: 142  DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
            D+T +L  II+ N ++Q+   + +     S F++L     LQ  VA Y+++D+ G P ++
Sbjct: 261  DLTFKLADIIKANINVQRLETDGSPQHVISEFEAL-----LQFHVATYMDNDIAGQPQAL 315

Query: 197  Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            Q   RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +A+ LT
Sbjct: 316  QKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLT 375

Query: 256  YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
            YPE V+ +NI KL + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+
Sbjct: 376  YPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVE 433

Query: 315  RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
            RHL D D VLFNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 434  RHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 493

Query: 375  TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
            + E R E   +  V   + +P++ + ++   QD L     +T +D F  YD+    +  C
Sbjct: 494  SPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQV---MNMC 550

Query: 433  YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
            Y     D V +P PA++KP  LWTGKQL S+ I    +++                 R +
Sbjct: 551  YWIPNWDGV-IPPPAVVKPKPLWTGKQLLSLAIPKGIHLQ-----------------RFD 592

Query: 493  GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
            G  ++    + P D  +   + E++ G + K T+G     GL   ++R+ G    +   +
Sbjct: 593  GGRDL----LSPKDTGMLIVDGEIMFGVVDKKTVG-ATGGGLIHTVMREKGPKVCAELFS 647

Query: 553  RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
             + K+   W+ ++GFSIGI D     +      K I E  +     I +    KL+ +PG
Sbjct: 648  SIQKVVNYWLLHNGFSIGIGDTIADAQTMRDVTKTIQEAKQKVQEIIIDAQHNKLEPEPG 707

Query: 613  CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
                ++ E  ++ +LN+ R+ AG++   SL   N+   M   GSKGS INISQM ACVGQ
Sbjct: 708  MTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 767

Query: 673  QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
            Q V G+R P GF DRSLPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DT
Sbjct: 768  QIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 827

Query: 733  AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS----- 787
            AVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D   +E +S     
Sbjct: 828  AVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIP 887

Query: 788  GEPLNFDRLLMKVKATCPPAGQRY-LSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFE 846
            G   +F+R              RY +       ++ + L   GKE   +     L+K  +
Sbjct: 888  GSDESFER--------------RYRIDILDTKNMISESLIESGKEIRGDV---QLQKILD 930

Query: 847  GQQDKLDKKIKFVE-------DIGW----------DDKSQI------------LEEVTHK 877
             + ++L K  K++        D  W           +  QI            LEE+   
Sbjct: 931  EEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEEIIFG 990

Query: 878  TSGITEKQLEV---------------FIQTCFSR-----------YRVKRVEAGTAIGAI 911
               + +K L V                +  C  R           +++ RV     +G I
Sbjct: 991  VRELCKKLLVVRGDTPLVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRVSFEWVLGEI 1050

Query: 912  GAQ---SIGEPG---------------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
              Q   SI  PG               TQMTL TFH+AGV+S N+T GVPR+KEI+N AK
Sbjct: 1051 ETQFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAK 1110

Query: 954  RISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
             I TP +T  L  E   +   A++V+  IE T L  V  S +I       + VI  D +T
Sbjct: 1111 NIKTPAMTVYLDPEVASDIEKAKIVQSAIEHTTLKNVTSSAEIYYDPDPRTTVIEDDYDT 1170

Query: 1012 IQDAHLCINADIVKESI-VQTPK-IKLKQQHIKVLDFRKLEIFPPVDKSKIHF--ELYSL 1067
            ++ A+  I    V+E+I  Q+P  ++L+    K+LD ++L +    +K   +F  +L+ +
Sbjct: 1171 VE-AYFAIPDQKVEETIDKQSPWLLRLELDRAKMLD-KQLTMAQVAEKISQNFGEDLFVI 1228

Query: 1068 --------------------------------------KNVLPMVIVKGIKTVERVVIAE 1089
                                                   ++L  + ++GI  + RV + +
Sbjct: 1229 WSDDTADKLIIRCRVVRDPKSLDEDADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQ 1288

Query: 1090 -KEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARI 1148
             K     +  E  + K++ L  +G  L  VM   G+D  +T SN   EV   LGIEA R 
Sbjct: 1289 HKVSHPDETGEFKQGKEWVLETDGVNLADVMAVPGVDSARTYSNDFIEVLSVLGIEATRS 1348

Query: 1149 CIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTA 1208
             +  EI   +   G  ++ RHM LL D+MT RG ++ ITR GI + D   LM  SFE+T 
Sbjct: 1349 SLYKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETV 1408

Query: 1209 DHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            + L +A+     D  +G+SE +++G   PLGTG
Sbjct: 1409 EILLDAAAAAELDDCKGISENVMLGQMAPLGTG 1441


>gi|374107397|gb|AEY96305.1| FADR086Cp [Ashbya gossypii FDAG1]
          Length = 1738

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 440/1291 (34%), Positives = 668/1291 (51%), Gaps = 155/1291 (12%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            I++   +L +FK ++  D   L  +E   RPE +++T + VPP  +RPS+  + SQ  E+
Sbjct: 201  IISAEEILNVFKHISPEDSWRLGFNEDFSRPEWMLLTVLPVPPPPVRPSISFNESQRGED 260

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
            D+T +L  I++ N ++Q+  +  +           LQ  VA Y+++D+ G P ++Q + R
Sbjct: 261  DLTYKLGDILKANINVQRLEINGSPQHVIQESESLLQFHVATYMDNDIAGQPQAVQKSGR 320

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            P+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +P  +A+ LTYPE V
Sbjct: 321  PIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVV 380

Query: 261  SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
            + +NI++L Q ++NGP+++PGA+ +   +G  R+     +    ++L+ G  V+RH+ D 
Sbjct: 381  TPYNIDRLTQLVRNGPNEHPGAKYVIRDNGD-RIDLRYSKRAGDIQLQYGWKVERHIMDD 439

Query: 321  DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
            D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R 
Sbjct: 440  DPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRA 499

Query: 381  EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
            E   L  V   + +P++ +  +   QD L     +T +DTF +      M  ++ D  D 
Sbjct: 500  ELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLYWIPD-WDG 558

Query: 441  VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
            V +PTP ILKP  LW+GKQL S+ I    +++ +   T    TY                
Sbjct: 559  V-IPTPTILKPKPLWSGKQLLSMAIPSGIHLQRFDEGT----TY---------------- 597

Query: 501  TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             + P D  +   + ++I G + K T+G+ +  GL  V+ R+ G    +     + K+   
Sbjct: 598  -LSPKDNGMLIIDGQIIFGVVDKKTVGSSSG-GLIHVVTREKGPEVCAKLFGNIQKVVNY 655

Query: 561  WIGNHGFSIGIDDVQPKKELSDKKG-KLISENYEVCNVKI----KEYNEGKLQLKPGCDA 615
            W+ ++GFSIGI D      ++D+K  + I++   +   K+    KE     L  K G   
Sbjct: 656  WLLHNGFSIGIGDT-----IADEKTMREITDAIALAKKKVEEVTKEAQANLLTAKHGMTL 710

Query: 616  AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
             ++ E  +   LN  R+ AG++   +L   N+   M   GSKGS INI+QM ACVGQQSV
Sbjct: 711  RESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSV 770

Query: 676  GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
             G+R   GF DR+LPHF +    P +KGFV NS+  GL+  EFFFH MGGREGL+DTAVK
Sbjct: 771  EGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 830

Query: 736  TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS-----GEP 790
            TA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DGMD A++E +S     G  
Sbjct: 831  TAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMDAAHIEKQSIDTIPGSD 890

Query: 791  LNFDR-----LLMKVKATCP---PAGQRYLSPQQVSEIVE---KQLAAYGKESCSEAFLN 839
            L F++     LL    A  P    +G   +   ++  +++   KQL    +    + F++
Sbjct: 891  LAFEKRYRIDLLNPNYALDPNLLESGTEIVGDLKLQNLLDEEYKQLVQ-DRHFLRKIFMD 949

Query: 840  ---------SLRKFFEGQQDKLDKKIKFVEDIGWDD-----------------KSQILEE 873
                     ++R+  +  Q           D+   D                 KSQIL+E
Sbjct: 950  GEHNWPLPVNIRRIIQNAQQTFRIDSTKPTDLSIQDVVQGVRGLQERLLVLRGKSQILQE 1009

Query: 874  VTHKTSGITEKQLEVFIQT--CFSRYRVKRVEAGTAIGAIGAQ---SIGEPG-------- 920
                   +    L   + T    + YR+ +      +  I AQ   SI  PG        
Sbjct: 1010 AQENAITLFCCLLRSRLATRRVITEYRLTKQTFEWVLNNIEAQFLRSIVHPGEMVGVLAA 1069

Query: 921  -------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECN--DNEN 971
                   TQMTL TFHFAGVAS  +T GVPR+KEI+N AK + TP +T  LE +   ++ 
Sbjct: 1070 QSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEESYATDQE 1129

Query: 972  AARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIV-Q 1030
             A++++  IE T L  V  + +I      +S VI  D E IQ  H  +  +  + S+  Q
Sbjct: 1130 KAKLIRSAIEHTTLKSVTVASEIYYDPDPSSTVIEEDEEIIQ-LHFSLMDEETEASLKHQ 1188

Query: 1031 TP---------------KIKLKQQHIKVLDFRKLEIF---------------------PP 1054
            +P                + + Q   K+ +  K ++F                       
Sbjct: 1189 SPWLLRLELDRVAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVVRDPKT 1248

Query: 1055 VDKSKIHFELYSLKNV----LPMVIVKGIKTVERVVIAEKEKEKRKV-KENGEKKK---Y 1106
            +D      E + LK +    L  + ++G++ + RVV+    K  RKV  E GE  K   +
Sbjct: 1249 LDAEAEAEEDHMLKKIENTMLESITLRGVQDITRVVMM---KYDRKVPSETGEYHKIPEW 1305

Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  +G  L  VM   G+D  +  +N   ++   LGIEA R  +  E+   + + G  ++
Sbjct: 1306 VLETDGVNLSEVMSVPGVDPTRIYTNSFIDIMNVLGIEAGRAALYKEVYNVIASDGSYVN 1365

Query: 1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
             RHM LL D+MT +G ++ +TR G  + D   LM  SFE+T + LF A      D   GV
Sbjct: 1366 YRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDDCSGV 1425

Query: 1227 SECIIMGIPMPLGTGILKIRQRDAVPPMLKY 1257
            SE +I+G   P+GTG   +   D    ++KY
Sbjct: 1426 SENVILGQMAPIGTGSFDVMIDDE--SLIKY 1454


>gi|302307500|ref|NP_984182.2| ADR086Cp [Ashbya gossypii ATCC 10895]
 gi|442570012|sp|Q75A34.2|RPB1_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit 1; Short=RNA polymerase II subunit
            B1; AltName: Full=DNA-directed RNA polymerase III largest
            subunit
 gi|299789031|gb|AAS52006.2| ADR086Cp [Ashbya gossypii ATCC 10895]
          Length = 1745

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 440/1291 (34%), Positives = 668/1291 (51%), Gaps = 155/1291 (12%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            I++   +L +FK ++  D   L  +E   RPE +++T + VPP  +RPS+  + SQ  E+
Sbjct: 201  IISAEEILNVFKHISPEDSWRLGFNEDFSRPEWMLLTVLPVPPPPVRPSISFNESQRGED 260

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
            D+T +L  I++ N ++Q+  +  +           LQ  VA Y+++D+ G P ++Q + R
Sbjct: 261  DLTYKLGDILKANINVQRLEINGSPQHVIQESESLLQFHVATYMDNDIAGQPQAVQKSGR 320

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            P+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +P  +A+ LTYPE V
Sbjct: 321  PIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVV 380

Query: 261  SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
            + +NI++L Q ++NGP+++PGA+ +   +G  R+     +    ++L+ G  V+RH+ D 
Sbjct: 381  TPYNIDRLTQLVRNGPNEHPGAKYVIRDNGD-RIDLRYSKRAGDIQLQYGWKVERHIMDD 439

Query: 321  DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
            D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R 
Sbjct: 440  DPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRA 499

Query: 381  EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
            E   L  V   + +P++ +  +   QD L     +T +DTF +      M  ++ D  D 
Sbjct: 500  ELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLYWIPD-WDG 558

Query: 441  VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
            V +PTP ILKP  LW+GKQL S+ I    +++ +   T    TY                
Sbjct: 559  V-IPTPTILKPKPLWSGKQLLSMAIPSGIHLQRFDEGT----TY---------------- 597

Query: 501  TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             + P D  +   + ++I G + K T+G+ +  GL  V+ R+ G    +     + K+   
Sbjct: 598  -LSPKDNGMLIIDGQIIFGVVDKKTVGSSSG-GLIHVVTREKGPEVCAKLFGNIQKVVNY 655

Query: 561  WIGNHGFSIGIDDVQPKKELSDKKG-KLISENYEVCNVKI----KEYNEGKLQLKPGCDA 615
            W+ ++GFSIGI D      ++D+K  + I++   +   K+    KE     L  K G   
Sbjct: 656  WLLHNGFSIGIGDT-----IADEKTMREITDAIALAKKKVEEVTKEAQANLLTAKHGMTL 710

Query: 616  AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
             ++ E  +   LN  R+ AG++   +L   N+   M   GSKGS INI+QM ACVGQQSV
Sbjct: 711  RESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSV 770

Query: 676  GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
             G+R   GF DR+LPHF +    P +KGFV NS+  GL+  EFFFH MGGREGL+DTAVK
Sbjct: 771  EGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 830

Query: 736  TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS-----GEP 790
            TA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DGMD A++E +S     G  
Sbjct: 831  TAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMDAAHIEKQSIDTIPGSD 890

Query: 791  LNFDR-----LLMKVKATCP---PAGQRYLSPQQVSEIVE---KQLAAYGKESCSEAFLN 839
            L F++     LL    A  P    +G   +   ++  +++   KQL    +    + F++
Sbjct: 891  LAFEKRYRIDLLNPNYALDPNLLESGTEIVGDLKLQNLLDEEYKQLVQ-DRHFLRKIFMD 949

Query: 840  ---------SLRKFFEGQQDKLDKKIKFVEDIGWDD-----------------KSQILEE 873
                     ++R+  +  Q           D+   D                 KSQIL+E
Sbjct: 950  GEHNWPLPVNIRRIIQNAQQTFRIDSTKPTDLSIQDVVQGVRGLQERLLVLRGKSQILQE 1009

Query: 874  VTHKTSGITEKQLEVFIQT--CFSRYRVKRVEAGTAIGAIGAQ---SIGEPG-------- 920
                   +    L   + T    + YR+ +      +  I AQ   SI  PG        
Sbjct: 1010 AQENAITLFCCLLRSRLATRRVITEYRLTKQTFEWVLNNIEAQFLRSIVHPGEMVGVLAA 1069

Query: 921  -------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECN--DNEN 971
                   TQMTL TFHFAGVAS  +T GVPR+KEI+N AK + TP +T  LE +   ++ 
Sbjct: 1070 QSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEESYATDQE 1129

Query: 972  AARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIV-Q 1030
             A++++  IE T L  V  + +I      +S VI  D E IQ  H  +  +  + S+  Q
Sbjct: 1130 KAKLIRSAIEHTTLKSVTVASEIYYDPDPSSTVIEEDEEIIQ-LHFSLMDEETEASLKHQ 1188

Query: 1031 TP---------------KIKLKQQHIKVLDFRKLEIF---------------------PP 1054
            +P                + + Q   K+ +  K ++F                       
Sbjct: 1189 SPWLLRLELDRVAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVVRDPKT 1248

Query: 1055 VDKSKIHFELYSLKNV----LPMVIVKGIKTVERVVIAEKEKEKRKV-KENGEKKK---Y 1106
            +D      E + LK +    L  + ++G++ + RVV+    K  RKV  E GE  K   +
Sbjct: 1249 LDAEAEAEEDHMLKKIENTMLESITLRGVQDITRVVMM---KYDRKVPSETGEYHKIPEW 1305

Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  +G  L  VM   G+D  +  +N   ++   LGIEA R  +  E+   + + G  ++
Sbjct: 1306 VLETDGVNLSEVMSVPGVDPTRIYTNSFIDIMNVLGIEAGRAALYKEVYNVIASDGSYVN 1365

Query: 1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
             RHM LL D+MT +G ++ +TR G  + D   LM  SFE+T + LF A      D   GV
Sbjct: 1366 YRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDDCSGV 1425

Query: 1227 SECIIMGIPMPLGTGILKIRQRDAVPPMLKY 1257
            SE +I+G   P+GTG   +   D    ++KY
Sbjct: 1426 SENVILGQMAPIGTGSFDVMIDDE--SLIKY 1454


>gi|308198333|ref|XP_001386996.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
            subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
 gi|149388976|gb|EAZ62973.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
            subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
          Length = 1739

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 437/1284 (34%), Positives = 664/1284 (51%), Gaps = 154/1284 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L P  +L + K ++  DC  L  +E   RPE ++IT + VPP  +RPS+  + +   E+
Sbjct: 201  LLTPSEILNVLKHISSLDCLRLGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGED 260

Query: 142  DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
            D+T +L  +++ N ++Q+  ++ +     S F++L     LQ  VA Y+++D+ G P ++
Sbjct: 261  DLTFKLADVLKANINVQRLEMDGSPQHVISEFEAL-----LQFHVATYMDNDIAGQPQAL 315

Query: 197  Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            Q   RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +AR L+
Sbjct: 316  QKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLS 375

Query: 256  YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
            YPE V+ +NI +L + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+
Sbjct: 376  YPEVVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVE 433

Query: 315  RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
            RHL D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 434  RHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 493

Query: 375  TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
            + E R E   +  V   + +P++ + ++   QD L     +T +D F  YD+    L   
Sbjct: 494  SPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFIDYDQVMNMLYWI 553

Query: 433  YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
               DG+        AI KP  LWTGKQL S+ I    +++                 R +
Sbjct: 554  PNWDGVIPPP----AIAKPKPLWTGKQLLSMAIPKGIHLQ-----------------RFD 592

Query: 493  GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
            G +++    + P D  +   + E++ G + K T+G     GL   ++R+ G    +   +
Sbjct: 593  GGKDL----LSPKDTGMLIVDGEIMFGVVDKKTVG-ATGGGLIHTVMREKGPRVCAQLFS 647

Query: 553  RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
             + K++  W+ ++GFSIGI D              ISE        I +    KL+ +PG
Sbjct: 648  SIQKVTNYWLLHNGFSIGIGDTIADVSTMKDITSTISEAKIKVQEIILDAQSNKLEPEPG 707

Query: 613  CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
                ++ E  ++ +LN+ R+ AG++   +L   N+   M   GSKGS INISQM ACVGQ
Sbjct: 708  MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 767

Query: 673  QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
            Q V G+R P GF DR+LPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DT
Sbjct: 768  QIVEGKRIPFGFSDRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 827

Query: 733  AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS----- 787
            AVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D   +E +S     
Sbjct: 828  AVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIP 887

Query: 788  GEPLNFDRLLM--------KVKATCPPAGQRYLSPQQVSEIVE---KQLA---AYGKESC 833
            G   +F+R            +  +   +G+      ++ ++++   KQL     Y +E C
Sbjct: 888  GSNDSFERRFRIDVLDSSKSIPESLLESGKEIKGDVKLQKVLDEEYKQLLDDRKYLREVC 947

Query: 834  ------SEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDK-------SQILEEVTHKTSG 880
                  S     +LR+  +  Q           D+  D+         + L  V   T  
Sbjct: 948  FPNGDFSWPLPVNLRRIIQNAQQIFHNGRYKASDLRLDEVIVGVRSLCEKLLVVRGDTEL 1007

Query: 881  ITEKQLE-VFIQTCFSR-----------YRVKRVEAGTAIGAIGAQ---SIGEPG----- 920
            + E Q     +  C  R           +++ R      +G I  Q   SI  PG     
Sbjct: 1008 VKEAQANATLLFQCLVRSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIVHPGEMVGV 1067

Query: 921  ----------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELE--CND 968
                      TQMTL TFH+AGV+S N+T GVPR+KEI+N AK I TP +T  L+   +D
Sbjct: 1068 IAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDPALSD 1127

Query: 969  NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESI 1028
            +   A+VV+  IE T L  V  S +I       + VI  D +T++ A+  I  + V+ESI
Sbjct: 1128 DIEKAKVVQSAIEHTSLKNVTSSTEIYYDPDPRTTVIEEDYDTVE-AYFSIPDEKVEESI 1186

Query: 1029 V-QTPK-IKLKQQHIKVLDFRKLEIFPPVDKSKIHF--ELYSL----------------- 1067
              Q+P  ++L+    K+LD ++L +    +K   +F  +L+ +                 
Sbjct: 1187 EKQSPWLLRLELDRAKMLD-KQLTMAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR 1245

Query: 1068 ---------------------KNVLPMVIVKGIKTVERVVIAE-KEKEKRKVKENGEKKK 1105
                                  ++L  + ++GI  + RV + + K        E  + K+
Sbjct: 1246 DPKSLDEEADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVNTPDATGEFKQGKE 1305

Query: 1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
            + L  +G  L  VM   G+D  +T SN+  E+   LGIEA R  +  EI   +   G  +
Sbjct: 1306 WVLETDGVNLADVMAVPGVDSSRTYSNNFIEILSVLGIEATRAALFKEILNVLSFDGSYV 1365

Query: 1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
            + RHM LL D+MT RG ++ ITR GI + D   LM  SFE+T + L  A  +   D   G
Sbjct: 1366 NYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLEAGASAELDDCRG 1425

Query: 1226 VSECIIMGIPMPLGTGILKIRQRD 1249
            +SE +++G   PLGTG   +   D
Sbjct: 1426 ISENVMLGQMAPLGTGAFDVMLDD 1449


>gi|328793442|ref|XP_623281.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
            [Apis mellifera]
          Length = 1883

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 431/1279 (33%), Positives = 654/1279 (51%), Gaps = 176/1279 (13%)

Query: 94   LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
            + K +TD +  +L +     RP+ +++T + VPP+++RP+VIM GS  N++D+T +L  I
Sbjct: 216  ILKHITDEESFILGMDPKFARPDWMVVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADI 275

Query: 151  IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRL 209
            I+ N  L +      +A       + LQ  VA  +++D+ G+P +MQ + +PL     RL
Sbjct: 276  IKANNELIRNEQAGAAAHVISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARL 335

Query: 210  KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
            KGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ LT+PE V+  NI+K++
Sbjct: 336  KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQ 395

Query: 270  QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLEDGDVVLFNRQ 328
            + ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ DGD+V+FNRQ
Sbjct: 396  ELVRRGNSQYPGAKYIVRDNGERIDL--RFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQ 453

Query: 329  PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGV 388
            P+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+H PQ+ E R E   +   
Sbjct: 454  PTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHAPQSMETRAEVENIHVT 513

Query: 389  QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLPTP 446
               + TP+  + ++   QD LT+   +T++D F ++      LM     DG     +P P
Sbjct: 514  PRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPSWDG----KMPQP 569

Query: 447  AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR--IETMCP 504
             ILKP  LWTGKQ+FS++I  + NM          +T+S     T  DEE     + + P
Sbjct: 570  CILKPKPLWTGKQIFSLIIPGNVNMI---------RTHS-----THPDEEDDGPYKWISP 615

Query: 505  NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
             D  V   + EL+ G L K TLG  +   L  + + + G          +  +   W+  
Sbjct: 616  GDTKVMVEHGELVMGILCKKTLGT-SAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLL 674

Query: 565  HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
             G SIGI D     +   +  K I +  E     I++ +  +L+  PG    QT E  + 
Sbjct: 675  EGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVN 734

Query: 625  DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
             ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P GF
Sbjct: 735  RILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGF 794

Query: 685  IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
              R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKTA+TGY+ R
Sbjct: 795  RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQR 854

Query: 745  RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATC 804
            RLIKA+E + + YD +VRN+ G ++Q  YG+DG+    +E ++   +       + K   
Sbjct: 855  RLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKFKF 914

Query: 805  PPAGQRYL--------------SPQQVSEIVEKQLAAYGKE-----------------SC 833
             P  +RYL              S + +SE+ E++     K+                  C
Sbjct: 915  DPTNERYLRRIFNEDIVREMMGSGEVISEL-EREWEQLNKDRAVLREIFPSGESKVVLPC 973

Query: 834  S-EAFLNSLRKFF----------------EGQQDKLDKKIKFVEDIGWDDKS-------- 868
            + +  + +++K F                +G +D LDK I    D     ++        
Sbjct: 974  NLQRMIWNVQKIFHINKRAPTDLSPMKVIQGVKDLLDKCIIVAGDDRLSKQANENATLLF 1033

Query: 869  QILEEVTHKTSGITEK------QLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQ 922
            Q L   T  T  ++E+        E  I    +R++  +V  G  +GA+ AQS+GEP TQ
Sbjct: 1034 QCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQSLGEPATQ 1093

Query: 923  MTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL---ECNDNENAARVVKGR 979
            MTL TFHFAGV+S N+T GVPR+KEIIN +K+   P +T  L      D E A  V+  R
Sbjct: 1094 MTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL-CR 1152

Query: 980  IEKTLLGQVAKSIKIVMTSRLASIVIA----------------------------LDMET 1011
            +E T L +V  +  I       + VIA                            LD + 
Sbjct: 1153 LEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPNKISPWLLRIELDRKR 1212

Query: 1012 IQDAHL------------------CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP 1053
            + D  L                  CI  D   E +V   +I +     K  D  +     
Sbjct: 1213 MTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI-MNSDDNKFQDSEEET--- 1268

Query: 1054 PVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KY 1106
             VDK +    L  ++ N+L  + ++GI+ + +V +   + + +K   + E GE K   ++
Sbjct: 1269 -VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITETGEFKAIAEW 1327

Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  +GT L  V+    +D  +T SN I E+ Q LGIEA R  +  E+N  ++ +G+ ++
Sbjct: 1328 LLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVN 1387

Query: 1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
             RH+ LL D+MT +G ++ ITR GI + D   LM  SF                     V
Sbjct: 1388 YRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF---------------------V 1426

Query: 1227 SECIIMGIPMPLGTGILKI 1245
            SE IIMG    +GTG   +
Sbjct: 1427 SENIIMGQLPRIGTGCFDL 1445


>gi|157130170|ref|XP_001655623.1| DNA-directed RNA polymerase II largest subunit [Aedes aegypti]
 gi|108871980|gb|EAT36205.1| AAEL011692-PA [Aedes aegypti]
          Length = 1298

 Score =  621 bits (1601), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 347/701 (49%), Positives = 448/701 (63%), Gaps = 35/701 (4%)

Query: 561  WIGNHGFSI--------------GIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGK 606
            W G   FS+                 DV P ++L  +K KL+   Y  C+  I E  +G 
Sbjct: 597  WTGKQIFSLILKPNKDCIVNANLSTKDVTPSRKLLQEKQKLLENGYSRCDEYIAEMKKGT 656

Query: 607  LQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQM 666
            LQ +PGC A QTLEAV+   L+ IRE A KAC   L   NS LIM+Q GSKGS INISQM
Sbjct: 657  LQCQPGCTAEQTLEAVMLKELSSIRELAAKACFRELHPTNSALIMAQSGSKGSNINISQM 716

Query: 667  VACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGR 726
            +ACVGQQ++ G+R PNGF DR+LPHF + +K PAA+GFV NSFYSGL+ TEFFFHTM GR
Sbjct: 717  IACVGQQAINGKRVPNGFEDRALPHFEKFSKIPAARGFVQNSFYSGLTPTEFFFHTMAGR 776

Query: 727  EGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
            EGLVDTAVKTA+TGY+ RRL+K LEDL +QYD +VRNA G +V+F YG DG+DP  ME K
Sbjct: 777  EGLVDTAVKTAETGYLQRRLVKCLEDLVVQYDGTVRNAIGEVVEFTYGADGLDPVYMEIK 836

Query: 787  SGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFE 846
            + +P++ DR  M V++  P   +  LS  ++  + E+ L     +     F     +F  
Sbjct: 837  N-KPVDIDRQFMHVRSVYPCRNEAPLSGNEILPVAEEILKKSDFDGSRADFRKECLEFLS 895

Query: 847  GQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGT 906
                +LD+  K      +   S++  EV   T G    QLE F+    ++Y     E GT
Sbjct: 896  KFGQRLDQIQK-----RYRHCSKVSLEVERTTRG----QLEAFLTQVRNKYNKAITEPGT 946

Query: 907  AIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELEC 966
            A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNITQGVPRI EIIN  K ISTPIITAE+E 
Sbjct: 947  AVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKAISTPIITAEIED 1006

Query: 967  NDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKE 1026
            N +   AR VK RIEKT LG+++  I+    S    ++I LD++ I+   L +NA+ ++ 
Sbjct: 1007 NTSMEFARKVKARIEKTTLGEISSYIEEAYKSDDCFLLIKLDLDRIRVLGLEVNAETIRY 1066

Query: 1027 SIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK--IHFELYSLKNVLPMVIVKGIKTVER 1084
            SI  T K+KLKQ++++V     + I P   K    ++ EL  L   +P V+V G+  V R
Sbjct: 1067 SIC-TSKLKLKQENVEVYGPSLIIIRPDPSKHSHALNAELQRLLTAIPNVVVAGLPQVSR 1125

Query: 1085 VVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
             VIA        V ++     Y+L VEG GL+ VM   G+ G +TKSN+I EV  TLGIE
Sbjct: 1126 AVIA--------VDDSRGPPTYKLCVEGYGLRDVMATYGVVGARTKSNNILEVYVTLGIE 1177

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  I++EI + M+ HGMS+D RH+MLLA  MT RGEVLGITR G+ KM +SV  LASF
Sbjct: 1178 AARTTIMNEITDVMEGHGMSVDHRHIMLLASQMTSRGEVLGITRHGLAKMRESVFNLASF 1237

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            EKTADHLF+A+  G+ D I+GVSE II+G+P  +GTG+ K+
Sbjct: 1238 EKTADHLFDAAYYGQTDSIDGVSERIILGMPAAIGTGLFKL 1278



 Score =  461 bits (1186), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/509 (46%), Positives = 335/509 (65%), Gaps = 24/509 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD--RSK- 57
           + NP +  L K  +   ++KK    A K  KCP CG +NG VKK   ++ I+H+  R K 
Sbjct: 129 LMNPNLSYLAKKSIHSQVLKK----AKKNTKCPYCGSLNGPVKKGAGLMKIVHEPFRGKK 184

Query: 58  -----VTESLQEFASAITHTKESKAAVNVATYI--LNPVNVLFLFKRMTDTDCEVLYLSE 110
                VT +L+   SAI   +E    +  ++ +  LNPV VL LFK +  +D  +L ++ 
Sbjct: 185 ATDPLVTNALEVMMSAIEGNRELSQTIGPSSLMKELNPVEVLDLFKNIPKSDIPLLGMTS 244

Query: 111 ---RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANS 166
               P  LI+T + VPP+ IRPSV+ +  + + E+D+T +   I+  +  + + ++    
Sbjct: 245 PESNPADLIVTRVFVPPVCIRPSVVSEVKAGTTEDDLTMKQSEILLISDVIAKHMMSGGK 304

Query: 167 AFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVE 226
                  W+ LQ+  A Y NS++ G+P S+   +P  G VQRLKGKQGRFRGNLSGKRV+
Sbjct: 305 IELIQEDWDYLQLHCALYFNSELSGIPLSLMPKKPTRGIVQRLKGKQGRFRGNLSGKRVD 364

Query: 227 YTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIR 286
           ++ RTVISPDPNL I +V +P R+A+ILT+PERV+  NI K+RQ I+NG +K+PGA  ++
Sbjct: 365 FSARTVISPDPNLMIHQVGVPDRVAKILTFPERVNTANINKMRQLIKNGTEKHPGANYVQ 424

Query: 287 YPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIM 344
                 +  + YG  R+++A +LK G IV+RHL DGDVVLFNRQPSLH++SIMCH A++ 
Sbjct: 425 QKGSAFKKYLAYGN-RDKVAQDLKCGDIVERHLMDGDVVLFNRQPSLHKLSIMCHVAKVQ 483

Query: 345 PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAS 404
           P RT RFNE  C PYNADFDGDEMN+H+PQTEEAR EAL+LMG ++NL TP+NGE+L+A+
Sbjct: 484 PQRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALVLMGNKSNLVTPRNGELLIAA 543

Query: 405 TQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLF 461
           TQDF+T  +L+T+KD F  R     +   M  G D    +DLP PAI+KP ++WTGKQ+F
Sbjct: 544 TQDFITGGYLLTQKDQFLTREQVMQLAACMLSGPDANMEIDLPKPAIIKPRKMWTGKQIF 603

Query: 462 SVLIRPHANMRVYVNLTVKEKTYSNKLIR 490
           S++++P+ +  V  NL+ K+ T S KL++
Sbjct: 604 SLILKPNKDCIVNANLSTKDVTPSRKLLQ 632


>gi|157126795|ref|XP_001660950.1| DNA-directed RNA polymerase II largest subunit [Aedes aegypti]
 gi|108873160|gb|EAT37385.1| AAEL010617-PA [Aedes aegypti]
          Length = 1298

 Score =  620 bits (1598), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 346/701 (49%), Positives = 448/701 (63%), Gaps = 35/701 (4%)

Query: 561  WIGNHGFSI--------------GIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGK 606
            W G   FS+                 DV P ++L  +K KL+   Y  C+  I E  +G 
Sbjct: 597  WTGKQIFSLILKPNKDCIVNANLSTKDVTPSRKLLQEKQKLLENGYSRCDEYIAEMKKGT 656

Query: 607  LQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQM 666
            LQ +PGC A QTLEAV+   L+ IRE A KAC   L   NS LIM+Q GSKGS INISQM
Sbjct: 657  LQCQPGCTAEQTLEAVMLKELSSIRELAAKACFRELHPTNSALIMAQSGSKGSNINISQM 716

Query: 667  VACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGR 726
            +ACVGQQ++ G+R PNGF DR+LPHF + +K PAA+GFV NSFYSGL+ TEFFFHTM GR
Sbjct: 717  IACVGQQAINGKRVPNGFEDRALPHFEKFSKIPAARGFVQNSFYSGLTPTEFFFHTMAGR 776

Query: 727  EGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
            EGLVDTAVKTA+TGY+ RRL+K LEDL +QYD +VRNA G +V+F YG DG+DP  ME K
Sbjct: 777  EGLVDTAVKTAETGYLQRRLVKCLEDLVVQYDGTVRNAIGEVVEFTYGADGLDPVYMEIK 836

Query: 787  SGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFE 846
            + +P++ DR  M V++  P   +  L+  ++  + E+ L     +     F     +F  
Sbjct: 837  N-KPVDIDRQFMHVRSVYPCRNEAPLNGNEIVPVAEEILKKSDFDGSRADFRKECLEFLS 895

Query: 847  GQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGT 906
                +LD+  K      +   S++  EV   T G    QLE F+    ++Y     E GT
Sbjct: 896  KFGQRLDQIQK-----RYRHCSKVSLEVERTTRG----QLEAFLTQVRNKYNKAITEPGT 946

Query: 907  AIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELEC 966
            A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNITQGVPRI EIIN  K ISTPIITAE+E 
Sbjct: 947  AVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKAISTPIITAEIED 1006

Query: 967  NDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKE 1026
            N +   AR VK RIEKT LG+++  I+    S    ++I LD++ I+   L +NA+ ++ 
Sbjct: 1007 NTSMEFARKVKARIEKTTLGEISSYIEEAYKSDDCFLLIKLDLDRIRVLGLEVNAETIRY 1066

Query: 1027 SIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK--IHFELYSLKNVLPMVIVKGIKTVER 1084
            SI  T K+KLKQ++++V     + I P   K    ++ EL  L   +P V+V G+  V R
Sbjct: 1067 SIC-TSKLKLKQENVEVYGPSLIIIRPDPSKHSHALNAELQRLLTAIPNVVVAGLPQVSR 1125

Query: 1085 VVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
             VIA        V ++     Y+L VEG GL+ VM   G+ G +TKSN+I EV  TLGIE
Sbjct: 1126 AVIA--------VDDSRGPPTYKLCVEGYGLRDVMATYGVVGARTKSNNILEVYVTLGIE 1177

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  I++EI + M+ HGMS+D RH+MLLA  MT RGEVLGITR G+ KM +SV  LASF
Sbjct: 1178 AARTTIMNEITDVMEGHGMSVDHRHIMLLASQMTSRGEVLGITRHGLAKMRESVFNLASF 1237

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            EKTADHLF+A+  G+ D I+GVSE II+G+P  +GTG+ K+
Sbjct: 1238 EKTADHLFDAAYYGQTDSIDGVSERIILGMPAAIGTGLFKL 1278



 Score =  461 bits (1185), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/509 (46%), Positives = 336/509 (66%), Gaps = 24/509 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD--RSK- 57
           + NP +  L K  +   ++KK    A K  KCP CG +NG VKK   ++ I+H+  R K 
Sbjct: 129 LMNPNLSYLAKKSIHSQVLKK----AKKNTKCPYCGSLNGPVKKGAGLMKIVHEPFRGKK 184

Query: 58  -----VTESLQEFASAITHTKESKAAVNVATYI--LNPVNVLFLFKRMTDTDCEVLYLSE 110
                VT +L+   SAI   +E    +  ++ +  LNPV VL LFK +  +D  +L ++ 
Sbjct: 185 ATDPLVTNALEVMMSAIEGNRELSQTIGPSSLMKELNPVEVLDLFKNIPKSDIPLLGMTS 244

Query: 111 ---RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANS 166
               P  LI+T + VPP+ IRPSV+ +  + + E+D+T +   I+  +  + + ++    
Sbjct: 245 PESNPADLIVTRVFVPPVCIRPSVVSEVKAGTTEDDLTMKQSEILLISDVIAKHMMSGGK 304

Query: 167 AFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVE 226
                  W+ LQ+  A Y NS++ G+P S+   +P  G VQRLKGKQGRFRGNLSGKRV+
Sbjct: 305 IELIQEDWDYLQLHCALYFNSELSGIPLSLMPKKPTRGIVQRLKGKQGRFRGNLSGKRVD 364

Query: 227 YTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIR 286
           ++ RTVISPDPNL I +V +P R+A+ILT+PERV+  NI K+RQ I+NG +K+PGA  ++
Sbjct: 365 FSARTVISPDPNLMIHQVGVPDRVAKILTFPERVNTANINKMRQLIKNGTEKHPGANYVQ 424

Query: 287 YPDGTARVLYGKF--RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIM 344
              G+A   Y  +  R+++A +LK G IV+RHL DGDVVLFNRQPSLH++SIMCH A++ 
Sbjct: 425 Q-KGSAFKKYLAYGNRDKVAQDLKCGDIVERHLMDGDVVLFNRQPSLHKLSIMCHVAKVQ 483

Query: 345 PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAS 404
           P RT RFNE  C PYNADFDGDEMN+H+PQTEEAR EAL+LMG ++NL TP+NGE+L+A+
Sbjct: 484 PQRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALVLMGNKSNLVTPRNGELLIAA 543

Query: 405 TQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLF 461
           TQDF+T  +L+T+KD F  R     +   M  G D    +DLP PAI+KP ++WTGKQ+F
Sbjct: 544 TQDFITGGYLLTQKDQFLTREQVMQLAACMLSGPDANMEIDLPKPAIIKPRKMWTGKQIF 603

Query: 462 SVLIRPHANMRVYVNLTVKEKTYSNKLIR 490
           S++++P+ +  V  NL+ K+ T S KL++
Sbjct: 604 SLILKPNKDCIVNANLSTKDVTPSRKLLQ 632


>gi|354545641|emb|CCE42368.1| hypothetical protein CPAR2_200110 [Candida parapsilosis]
          Length = 1746

 Score =  619 bits (1597), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 442/1289 (34%), Positives = 671/1289 (52%), Gaps = 164/1289 (12%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L P  +L +FK ++  DC  L  +E   RPE ++IT + VPP  +RPS+  + +   E+
Sbjct: 201  LLTPSEILNVFKHISPEDCYRLGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGED 260

Query: 142  DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
            D+T +L  II+ N ++Q+  ++ +     S F++L     LQ  VA Y+++D+ G P ++
Sbjct: 261  DLTFKLADIIKANINVQRLEIDGSPQHVISEFEAL-----LQFHVATYMDNDIAGQPQAL 315

Query: 197  Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            Q   RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +A+ LT
Sbjct: 316  QKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLT 375

Query: 256  YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
            YPE V+ +NI KL + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+
Sbjct: 376  YPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVE 433

Query: 315  RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
            RHL D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 434  RHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 493

Query: 375  TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
            + E R+E   +  V   + +P++ + ++   QD L     +T +D F  YD+    +  C
Sbjct: 494  SPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQV---MNMC 550

Query: 433  YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
            Y     D V  P   I     LW+GKQ+ S+ I    +++                 R +
Sbjct: 551  YWIPNWDGVIPPPAIIKP-KPLWSGKQMLSMAIPKGIHIQ-----------------RFD 592

Query: 493  GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
            G  ++    + P D  +   + E++ G + K T+G     GL   ++R+ G    +   +
Sbjct: 593  GGRDL----LSPKDTGMLIVDGEIMFGVVDKKTVG-ATGGGLIHTVMREKGPQVCAQLFS 647

Query: 553  RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
             + K+   W+ ++GFSIGI D            K I E  +     I +    KL  +PG
Sbjct: 648  SIQKVVNFWLLHNGFSIGIGDTIADASTMKDITKTIQEAKQKVQEIILDAQHNKLDPEPG 707

Query: 613  CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
                ++ E  ++ +LN+ R+ AG++   SL   N+   M   GSKGS INISQM ACVGQ
Sbjct: 708  MTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 767

Query: 673  QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
            Q V G+R P GF DRSLPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DT
Sbjct: 768  QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 827

Query: 733  AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS----- 787
            AVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D   +E +S     
Sbjct: 828  AVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDATQVEKQSVDTIP 887

Query: 788  GEPLNFDR-----LLMK---VKATCPPAGQRYLSPQQVSEIVEKQLAA------YGKESC 833
            G   +F+R     LL K   +  +   +G+      ++ ++++++         Y ++ C
Sbjct: 888  GSDASFERRYRIDLLEKNGSISESLLESGKEIQGDVKLQKLLDEEYNQLLKDRRYLRDVC 947

Query: 834  ------SEAFLNSLRKFFEGQQD------------KLDKKIKFVEDIGWDDKSQILEEVT 875
                  S     +LR+  +  Q             +LD+ +  V D+        L  V 
Sbjct: 948  FPNGDFSWPLPVNLRRIIQNAQQIFHNGRYKASDLRLDEIVNGVRDL-----CTKLLVVR 1002

Query: 876  HKTSGITEKQLE-VFIQTCFSR-----------YRVKRVEAGTAIGAIGAQ---SIGEPG 920
             KT    E Q     +  C  R           +++ R      +G I  Q   SI  PG
Sbjct: 1003 GKTKLAKEAQENATLLFQCLVRSRLAARRVIEEFKLNRSSFDWVLGEIETQFQKSIVHPG 1062

Query: 921  ---------------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL- 964
                           TQMTL TFH+AGV+S N+T GVPR+KEI+N AK I TP +T  L 
Sbjct: 1063 EMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLD 1122

Query: 965  -ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADI 1023
             E   +   A++V+  IE T L  V  S +I       + VI  D +T++ A+  I    
Sbjct: 1123 PEVASDIELAKIVQSSIEHTTLKNVTSSTEIYYDPDPRTTVIEEDYDTVE-AYFAIPDQK 1181

Query: 1024 VKESI-VQTPK-IKLKQQHIKVLDFRKLEIFPPVDKSKIHF--ELYSL-------KNVLP 1072
            V+ESI  Q+P  ++L+    K+LD ++L +    +K   +F  +L+ +       K ++ 
Sbjct: 1182 VEESIEKQSPWLLRLELDRAKMLD-KQLTMAQVAEKISQNFGEDLFVIWSDDTADKLIIR 1240

Query: 1073 MVIVKGIKTVERVVIAEKEKEKRKVK-----------------------------ENGE- 1102
              +V+  KT++    AE+++  ++++                             E GE 
Sbjct: 1241 CRVVRDPKTLDEDADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVSKPDETGEF 1300

Query: 1103 --KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKA 1160
               K++ L  +G  L  VM   G+D  +  SN   E+   LGIEA R  +  EI   +  
Sbjct: 1301 KQGKEWVLETDGVNLADVMAVPGVDSARIYSNDFIEILSVLGIEATRSALYKEILNVIAF 1360

Query: 1161 HGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRD 1220
             G  ++ RHM LL D+MT RG ++ ITR GI + D   LM  SFE+T + L +A+     
Sbjct: 1361 DGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAEL 1420

Query: 1221 DRIEGVSECIIMGIPMPLGTGILKIRQRD 1249
            D  +G+SE +++G   PLGTG   +   D
Sbjct: 1421 DDCKGISENVMLGQMAPLGTGAFDVMVDD 1449


>gi|156380969|ref|XP_001632039.1| predicted protein [Nematostella vectensis]
 gi|156219089|gb|EDO39976.1| predicted protein [Nematostella vectensis]
          Length = 1929

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 431/1310 (32%), Positives = 676/1310 (51%), Gaps = 161/1310 (12%)

Query: 55   RSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SER 111
            + K  ++  E  +   H  E     N     L    V  +FKR++D +C  L +   + R
Sbjct: 193  QPKFRKTALELTAEWKHVNED---ANEKKITLTAERVYEIFKRISDEECNALGMDPKNAR 249

Query: 112  PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSL 171
            P+ +I+T + VPP+ +RPS+++ G+  +++D+T +L  I++ N +L++  +   +A    
Sbjct: 250  PDWMIVTVLPVPPLPVRPSIVLSGTARSQDDLTHKLADIVKANNNLRRNELNGAAAHIIA 309

Query: 172  AGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
                 LQ  VA   ++++ G+P +MQ + RPL    QRLK K+GR RGNL GKRV+++ R
Sbjct: 310  EDTRLLQYHVATLTDNEIPGLPRAMQKSGRPLKSVKQRLKSKEGRIRGNLMGKRVDFSAR 369

Query: 231  TVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDG 290
             VI+PDPNL I +V +P  +A+ LT+PE V+  NI+ +++ ++ G ++YPGA+ I   +G
Sbjct: 370  AVITPDPNLSIDQVGVPRTIAQNLTFPEIVTPFNIDSMQELVRRGNNQYPGAKYIIRDNG 429

Query: 291  TARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 350
              RV          + L+ G  V+RH+ D DV++FNRQP+LH+MS+M HR +I+PW T R
Sbjct: 430  -ERVDLRFHPKPSDLHLQFGYKVERHIRDNDVIIFNRQPTLHKMSMMGHRVKILPWSTFR 488

Query: 351  FNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLT 410
             N SV  PYNADFDGDEMN+HVPQ+ E++ E   +M V  N+ TP++ + ++   QD LT
Sbjct: 489  LNLSVTTPYNADFDGDEMNLHVPQSLESKAEITEIMMVPRNIVTPQSNKPVMGIVQDSLT 548

Query: 411  SSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
            +    T++D F ++ A    LM     DG     +P PAILKP  LWTGKQ+ S++I  +
Sbjct: 549  AVRKFTKRDVFIEKDAMMNLLMWIPTWDG----KIPQPAILKPRPLWTGKQICSMIIPGN 604

Query: 469  AN-MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLG 527
             N +R +      E +   K I + GD + RI                     L K +LG
Sbjct: 605  VNVIRTHSTHPDDEDSGPYKHI-SPGDTKARI---------------------LCKKSLG 642

Query: 528  NGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKL 587
              +   L  ++  + G        + +  +   W+   G SIGI D     +  D+  + 
Sbjct: 643  TSS-GSLIHIIAMELGHDIARMFYSDVQCVVNNWLLLEGHSIGIGDCIADSDTYDEIQRA 701

Query: 588  ISE-NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRN 646
              +   EV  V  K +N+ +L+  PG    QT E  +  ILN  R+  G +   SL   N
Sbjct: 702  TKKAKKEVIEVIEKAHND-ELEPTPGNTLRQTFENQVNRILNDCRDKTGGSAQKSLSEFN 760

Query: 647  SPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVA 706
            +   M   GSKGS INISQ++A VGQQ+V G+R P GF  R+LPHF +    P ++GFV 
Sbjct: 761  NFKAMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVE 820

Query: 707  NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGG 766
            NS+ +GL+ TEFFFH MGGREGL+DTAVKT++TGY+ RRL+KA+E LS+ YD +VRN+  
Sbjct: 821  NSYLAGLTPTEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEGLSVAYDGTVRNSNN 880

Query: 767  CIVQFLYGDDGM--------------------------DPAN------------------ 782
             ++Q  YG+DGM                          DP N                  
Sbjct: 881  QLIQLRYGEDGMDGIAIEFQNMPTMRPSKTAFERKFHFDPTNDRWMTRYLQEDLVRDLSG 940

Query: 783  -------MEGKSGEPLNFDR-LLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCS 834
                   +EG+  + L  DR +L K++   P    R   P  +S ++      +   + S
Sbjct: 941  SATALQELEGEFNK-LQEDREILRKIQ---PSGNARVALPVNLSRLIWNAQKTFHITNRS 996

Query: 835  EAFLNSLRKFFEG------------QQDKLDKKIKFVEDIGWDD--KSQILEEVTHKTSG 880
             + L+ LR   EG             +D + K+ +F   + ++   +S +  +   +   
Sbjct: 997  ASDLHPLR-VIEGVRELSKKLVIVAGEDHISKQAQFNATLLFNILLRSTLCTKRVAEEFH 1055

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  +    +R+    V+ G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T 
Sbjct: 1056 LSSEAFEWLLGEIETRFNHSHVKPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTL 1115

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN +K+  TP +T  L  +   +   A+ V  R+E T L +V  +  I    
Sbjct: 1116 GVPRLKEIINVSKKPKTPSLTVFLIGQAARDAEMAKAVLCRLEHTTLRKVTANTAIYYDP 1175

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHI--KVLDFRKLE------ 1050
               + VIA D + +   +   + D+ + S     +I+L ++ +  K L   ++       
Sbjct: 1176 DPQNTVIAEDQDFVNVYYEMPDFDVARISPWLL-RIELDRKRMTDKKLTMEQISEKINLG 1234

Query: 1051 -------IFPPVDKSKIHFELYSLKN--------------------------VLPMVIVK 1077
                   IF   +  K+   +  + N                          +L  + ++
Sbjct: 1235 FGDDLNCIFNDDNAEKLVLRIRIMNNDDGKMQDDEDVDKMDDDVFLRCIEANMLTDMTLQ 1294

Query: 1078 GIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKS 1131
            GI+++ +V +    ++K+K   V E GE K   ++ L  +G  L  V+    +D  +T S
Sbjct: 1295 GIESISKVYMNLPHEDKKKRIVVTEQGEFKAIQEWLLETDGVSLMRVLSERDVDPVRTTS 1354

Query: 1132 NHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGI 1191
            N I E+   LGIEA R  +  E++  +   G  ++ RH+ LL D+MT RG ++ ITR GI
Sbjct: 1355 NDICEIFSVLGIEAVRKAVEREMDHVISFDGSYVNYRHLALLCDIMTCRGHLMAITRHGI 1414

Query: 1192 QKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             + +   LM +SFE+T D L +A+ +   D + GVSECIIMG    +GTG
Sbjct: 1415 NRQEVGALMRSSFEETVDVLMDAAAHAETDYLRGVSECIIMGKLPRIGTG 1464


>gi|448524734|ref|XP_003869005.1| Rpo21 protein [Candida orthopsilosis Co 90-125]
 gi|380353358|emb|CCG22868.1| Rpo21 protein [Candida orthopsilosis]
          Length = 1732

 Score =  617 bits (1590), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 442/1288 (34%), Positives = 668/1288 (51%), Gaps = 162/1288 (12%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L P  +L +FK ++  DC  L  +E   RPE ++IT + VPP  +RPS+  + +   E+
Sbjct: 201  LLTPSEILNVFKHISPEDCYRLGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGED 260

Query: 142  DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
            D+T +L  II+ N ++Q+  ++ +     S F++L     LQ  VA Y+++D+ G P ++
Sbjct: 261  DLTFKLADIIKANINVQRLEIDGSPQHVISEFEAL-----LQFHVATYMDNDIAGQPQAL 315

Query: 197  Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            Q   RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +A+ LT
Sbjct: 316  QKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLT 375

Query: 256  YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
            YPE V+ +NI KL + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+
Sbjct: 376  YPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVE 433

Query: 315  RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
            RHL D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 434  RHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 493

Query: 375  TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
            + E R+E   +  V   + +P++ + ++   QD L     +T +D F  YD+    +  C
Sbjct: 494  SPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQV---MNMC 550

Query: 433  YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
            Y     D V  P   I     LW+GKQ+ S+ I    +++                 R +
Sbjct: 551  YWIPNWDGVIPPPAIIKP-KPLWSGKQILSMAIPKGIHIQ-----------------RFD 592

Query: 493  GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
            G  ++    +   D  +   + E++ G + K T+G     GL   ++R+ G    +   +
Sbjct: 593  GGRDL----LSAKDTGMLIVDGEIMFGVVDKKTVG-ATGGGLIHTVMREKGPQVCAQLFS 647

Query: 553  RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
             + K+   W+ ++GFSIGI D            K I E  +     I +    KL  +PG
Sbjct: 648  SIQKVVNFWLLHNGFSIGIGDTIADASTMKDITKTIQEAKQKVQEIILDAQHNKLDPEPG 707

Query: 613  CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
                ++ E  ++ +LN+ R+ AG++   SL   N+   M   GSKGS INISQM ACVGQ
Sbjct: 708  MTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 767

Query: 673  QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
            Q V G+R P GF DRSLPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DT
Sbjct: 768  QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 827

Query: 733  AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS----- 787
            AVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D   +E +S     
Sbjct: 828  AVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGVDATQVEKQSVDTIP 887

Query: 788  GEPLNFDR----------------LLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKE 831
            G   +F+R                LL   K        + L  ++ ++++E +   Y ++
Sbjct: 888  GSDESFERRYRIDLLEENGSISESLLESGKEIQGDVKLQKLLDEEYNQLLEDR--RYLRD 945

Query: 832  SC------SEAFLNSLRKFFEGQQD------------KLDKKIKFVEDIGWDDKSQILEE 873
             C      S     +LR+  +  Q             KLD+ +  V D+    K  ++  
Sbjct: 946  VCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYKASDLKLDEIVNGVRDLC--TKLLVVRG 1003

Query: 874  VTHKTSGITEKQLEVFIQTCFSR---------YRVKRVEAGTAIGAIGAQ---SIGEPG- 920
             T       E    +F     SR         +++ R      +G I  Q   SI  PG 
Sbjct: 1004 NTKLAKEAQENATLLFQCLVRSRLASRRVIEEFKLNRSSFDWVLGEIETQFQKSIVHPGE 1063

Query: 921  --------------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL-- 964
                          TQMTL TFH+AGV+S N+T GVPR+KEI+N AK I TP +T  L  
Sbjct: 1064 MVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDP 1123

Query: 965  ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIV 1024
            E   +   A++V+  IE T L  V  S +I       + VI  D +T++ A+  I    V
Sbjct: 1124 EVASDIELAKIVQSSIEHTTLKNVTSSTEIYYDPDPRTTVIEEDYDTVE-AYFAIPDQKV 1182

Query: 1025 KESI-VQTPK-IKLKQQHIKVLDFRKLEIFPPVDKSKIHF--ELYSL-------KNVLPM 1073
            +ESI  Q+P  ++L+    K+LD ++L +    +K   +F  +L+ +       K ++  
Sbjct: 1183 EESIEKQSPWLLRLELDRAKMLD-KQLTMAQVAEKISQNFGEDLFVIWSDDTADKLIIRC 1241

Query: 1074 VIVKGIKTVERVVIAEKEKEKRKVK-----------------------------ENGE-- 1102
             +V+  KT++    AE+++  ++++                             E GE  
Sbjct: 1242 RVVRDPKTLDEDADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVSKPDETGEFK 1301

Query: 1103 -KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAH 1161
              K++ L  +G  L  VM   G+D  +T SN   E+   LGIEA R  +  EI   +   
Sbjct: 1302 QGKEWVLETDGVNLADVMAVPGVDSTRTYSNDFIEILSVLGIEATRSALYKEILNVIAFD 1361

Query: 1162 GMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD 1221
            G  ++ RHM LL D+MT RG ++ ITR GI + D   LM  SFE+T + L +A+     D
Sbjct: 1362 GSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAELD 1421

Query: 1222 RIEGVSECIIMGIPMPLGTGILKIRQRD 1249
              +G+SE +++G   PLGTG   +   D
Sbjct: 1422 DCKGISENVMLGQMAPLGTGAFDVMVDD 1449


>gi|443919745|gb|ELU39821.1| DNA-directed RNA polymerase III largest subunit [Rhizoctonia solani
            AG-1 IA]
          Length = 679

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 328/660 (49%), Positives = 440/660 (66%), Gaps = 51/660 (7%)

Query: 610  KPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVAC 669
            KPGCD  QTLEA+I+ +L+++R D G  CM  L   N+P+IM+ CGSKGS IN+SQMV+C
Sbjct: 25   KPGCDQEQTLEAMISGVLSKVRGDVGDICMKELSRHNAPIIMATCGSKGSTINVSQMVSC 84

Query: 670  VGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
            VGQQ + G+R P+GF DRSLPHFP+K+KEP AKGFV NSFY+GL  TEF FH + GREGL
Sbjct: 85   VGQQIISGKRVPDGFQDRSLPHFPKKSKEPPAKGFVRNSFYTGLLPTEFLFHAISGREGL 144

Query: 730  VDTAVKTADTGYMSRRLIK-----------------ALEDLSIQYDNSVRNAGGCIVQFL 772
            VDTAVKTA+TGYM+RRL+K                 ALEDL+ QYD SVRN+ G +VQF 
Sbjct: 145  VDTAVKTAETGYMARRLMKVYNHAKTKHLRTYNAQQALEDLTTQYDLSVRNSVGGVVQFT 204

Query: 773  YGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAA-YGKE 831
            +GDDG+DPA +EG + +P+++ R      AT    G R L P +V+E+++ +L++   + 
Sbjct: 205  FGDDGLDPACLEGDA-QPVDYTRAWSHSLATGSREG-RSLYPYEVTELIKAELSSPRFQN 262

Query: 832  SCSEAFLNSLRKFFEGQ----------QDKLDKKIKFVEDIGWDDKSQIL-------EEV 874
             C+ A++ S+  F              Q  +   I+  E+  WDD + +        + +
Sbjct: 263  ECTPAYIQSIEIFLRTSVVDKMAACRDQHGMFDAIERSEE--WDDDTDLSLGAAEYEKTI 320

Query: 875  THKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 934
                + +TE QL  F+  C+++Y   R+E      A+GAQSIGEPGTQMTLKTFHFAGVA
Sbjct: 321  VDNMTKVTESQLRRFLDICWTKYAKARIEP-----AVGAQSIGEPGTQMTLKTFHFAGVA 375

Query: 935  SMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKI 994
            SMN+T GVPRIKEIIN +K ISTPIIT  L  +D+E +AR+VKGR+EKT LG +A  ++ 
Sbjct: 376  SMNVTLGVPRIKEIINASKAISTPIITCRLVASDSETSARIVKGRLEKTYLGDIASVLEE 435

Query: 995  VMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR-KLEIFP 1053
               +    + I +DME IQ   L I  D VK +I+   K+K+K+ ++ +   + +L I+ 
Sbjct: 436  AWGASYTYVGIHIDMEAIQKLQLDITLDDVKWAILNNKKLKVKEHNVTIPPRKNRLRIY- 494

Query: 1054 PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGT 1113
             VD    ++ L  LK +LP V+VKGI T++R +I   +K+    K  G+K+   LLVEG 
Sbjct: 495  -VDGENKYYRLRQLKRILPSVVVKGIPTIQRAIINVLDKDSDDCK-RGDKE---LLVEGY 549

Query: 1114 GLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1173
            GL+ VM  +GI G KT SNHI EV+Q LGIEAAR  II EI  TM++HGM++D RH+MLL
Sbjct: 550  GLKEVMNTDGIIGEKTTSNHIMEVEQVLGIEAARKTIIGEIQYTMQSHGMNVDPRHIMLL 609

Query: 1174 ADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMG 1233
             D+MT++G+VLGITRFG+ KM  SVLMLASFEKT DHLF+A+   ++D I GVSE IIMG
Sbjct: 610  GDVMTYKGQVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAAGYAKNDNISGVSESIIMG 669


>gi|429962254|gb|ELA41798.1| hypothetical protein VICG_01150 [Vittaforma corneae ATCC 50505]
          Length = 1442

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 341/771 (44%), Positives = 462/771 (59%), Gaps = 57/771 (7%)

Query: 32  CPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKAAVNVATYILNPVNV 91
           C +C   NG +KK      I H+              I ++K     + +     NP   
Sbjct: 153 CHKCKSSNGTIKKNTG-FRIYHE--------------IKNSKGESTLIEI-----NPQTC 192

Query: 92  LFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRII 151
           L +F  + + D   L L + P  LII NI V P  IRPSV M     NE+D+T +L  II
Sbjct: 193 LNIFGMIEEEDYPFLNLKDDPCNLIIQNILVSPSCIRPSVDMQDEGFNEDDLTVKLSEII 252

Query: 152 QTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKG 211
            TN  L+  + + NS       W+ LQ++V   INSD+   P    V+ P+ GFVQRLKG
Sbjct: 253 NTNKLLEDSIRKGNSLPIINEDWDYLQLQVNLLINSDL---PSVSMVSTPIRGFVQRLKG 309

Query: 212 KQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQC 271
           K GRFR NLSGKRV+++GRTVISPD NL + EV +P+ +A+ILT PE+V+  NI  L + 
Sbjct: 310 KTGRFRCNLSGKRVDFSGRTVISPDANLSVEEVGVPMHIAKILTAPEKVTSFNIAFLTKL 369

Query: 272 IQNGPDKYPGARMIRYPDGTAR-----VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           + NG DK+PGA  I   D   +     ++YGK +     ELK G +V+RHL DGD++LFN
Sbjct: 370 VNNGVDKWPGANFIITKDEKGKEFKRFLMYGKNK-----ELKVGDVVERHLLDGDILLFN 424

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLHRMSIM H+ARI   RTLRFNE VC PYNADFDGDEMN+H PQT EAR EA  LM
Sbjct: 425 RQPSLHRMSIMAHKARIHQHRTLRFNECVCAPYNADFDGDEMNIHFPQTFEARAEAEELM 484

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM-GDGMDRVDLPT 445
           GV+ N+CT +NGE L++ TQDFLT  +L+T K+ F+ R  FS +C Y  G    R+ +  
Sbjct: 485 GVKQNICTARNGEPLISCTQDFLTGVYLLTSKNAFFTRKEFSQLCSYASGKKFQRIAIH- 543

Query: 446 PAILKPVELWTGKQLFSVLIR------PHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
           PAI+ P+EL+TGKQ+F  LI       P +   +Y +     ++  N + R   + + R 
Sbjct: 544 PAIILPIELFTGKQVFEFLIEFSLSFAPKSFTSIYPSQPSVTQSNINDIPRKNINLKARN 603

Query: 500 ETMC----PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
            +      PNDG+V   N+  I G+L K+ +G  N+ G     L           MN ++
Sbjct: 604 RSFKDEDDPNDGYVEILNNRYICGRLDKSIIGGENRKGSLIYQLLKVSKECAVVAMNSIS 663

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
            L++R++   GFSIG+DDV P + L  +K  +I   Y       KE +     +K   D 
Sbjct: 664 SLASRYLSEKGFSIGLDDVFPSEILIKEKQSVIDRVY-------KEVDSYINAIKNPID- 715

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
              LE  +  +LN+IRE+ G  C+  L   NS ++M +CGSKGS IN+ QM+ACVGQQ+V
Sbjct: 716 ---LEGKVL-VLNQIREECGSICLKELKKSNSIIVMQECGSKGSKINVGQMIACVGQQTV 771

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
              R P+G I+R+LPHF   +    +KGFV NSF+SGL++ EFFFH + GREGLVDTAVK
Sbjct: 772 SDMRIPDGMINRTLPHFSAHSLSSESKGFVLNSFFSGLTSYEFFFHAVSGREGLVDTAVK 831

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           TA+TGYM RRL+KALEDLS++YD +VRN+   ++Q+ YG+D +     EG+
Sbjct: 832 TAETGYMQRRLMKALEDLSVKYDYTVRNSAEDLIQYHYGEDNVQTVKDEGE 882



 Score =  281 bits (720), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 165/364 (45%), Positives = 222/364 (60%), Gaps = 25/364 (6%)

Query: 889  FIQTCFS----RYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 944
            FI+  FS    R   K V+ GTA+GAI  QSIGEPGTQMTLKTFHF GVASMN+T GVPR
Sbjct: 1091 FIKEFFSILATRMWNKIVDPGTAVGAIAGQSIGEPGTQMTLKTFHFTGVASMNVTLGVPR 1150

Query: 945  IKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIV 1004
            +KEIIN +  ISTPII A+L     E +A+VVKGRIEK L   +   I    T    S+ 
Sbjct: 1151 LKEIINASANISTPIIKAKLMTKGLE-SAKVVKGRIEKLLFKDIVYKISYATTPDRISLS 1209

Query: 1005 IALDMETIQDAHLCINAD---IVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIH 1061
             ++D   ++   L I  D    +  + ++   ++++   I     +++       K   +
Sbjct: 1210 FSVDQNLVEKLRLEIGIDQIGAILNAAIKGSSVEVQNDTI-TYSIKRV-------KENSY 1261

Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
            F++   +  L    + GI+ V RV++   +K    V E      Y LLVEG  L  V+  
Sbjct: 1262 FQIEKTRKQLLNTKISGIEGVNRVIVNCLDKS---VDE------YELLVEGRCLGKVLNV 1312

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
             G++   T SN I EV++TLGIEAAR  I+ E+  TM  +G+ +D RH MLLAD M F+G
Sbjct: 1313 PGVESLSTTSNDILEVEKTLGIEAARSLIMKEVEYTMGKYGIKVDHRHTMLLADTMAFKG 1372

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            E+LGITRFGI KM  S LMLASFE+TAD+LFNA++ G D+ + GVSE II+GIP+ LGTG
Sbjct: 1373 EILGITRFGIGKMRTSTLMLASFEQTADYLFNAAIRGLDEYVRGVSESIILGIPISLGTG 1432

Query: 1242 ILKI 1245
             +K+
Sbjct: 1433 AMKL 1436


>gi|169806355|ref|XP_001827922.1| DNA-directed RNA polymerase II largest subunit [Enterocytozoon
            bieneusi H348]
 gi|161778990|gb|EDQ31017.1| DNA-directed RNA polymerase II largest subunit [Enterocytozoon
            bieneusi H348]
          Length = 1541

 Score =  610 bits (1574), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 397/1248 (31%), Positives = 654/1248 (52%), Gaps = 142/1248 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVL--YLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
            ILN   V  +FK++  ++ + +   ++ RPE ++IT + V P ++RPS++ DG +S E+D
Sbjct: 174  ILNGEKVCNIFKKIDASELKFIGFNVNSRPENMLITVLLVTPPSVRPSILTDGLRS-EDD 232

Query: 143  ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
            +T +   I+++NA L++   +           + LQ  ++  IN+++ G P +MQ + RP
Sbjct: 233  LTHKYADIVKSNACLKKYEQDGAPNHIIRDYEQLLQFHLSTLINNEISGQPIAMQKSGRP 292

Query: 202  LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
            +     RLKGK+GR RGNL GKRV+++ R+VI+PDP +++ EV +P+ +A I T+PE+V+
Sbjct: 293  IKSISARLKGKEGRIRGNLMGKRVDFSARSVITPDPAIELDEVGVPLHIAMIQTFPEKVN 352

Query: 262  DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
              NI  L++ + NGP +YPGA  +   DG    L Y +F     ++L+ G IV+RH+ D 
Sbjct: 353  SININTLQKMVNNGPTEYPGANYVIRNDGQRIDLKYSRFD----LKLEKGFIVERHMLDN 408

Query: 321  DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
            D+VLFNRQPSLH+MS+M HRA+IM  +T R N SV +PYNADFDGDEMN+H+PQ+   ++
Sbjct: 409  DIVLFNRQPSLHKMSMMGHRAKIMNNKTFRLNLSVTSPYNADFDGDEMNLHMPQSYNTKS 468

Query: 381  EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG--- 437
            E + L  V  N+ +P++ + ++   QD L    L T K+TF+++   ++   +  D    
Sbjct: 469  ELINLASVSRNIISPQSNKPVIGIVQDTLVGVRLFTLKNTFFNKRE-TMNLLFTLDTLEE 527

Query: 438  --MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
              M+ ++ P   I   + LW+G Q+FS +     N                         
Sbjct: 528  KVMEIINNPILIIHNKISLWSGLQIFSAVFPNKFNF------------------------ 563

Query: 496  EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
                     N   V  +NS LI+G L K T G     GL  V+  DYG    +  +N + 
Sbjct: 564  ---------NYKGVVIKNSNLITGTLSKITCG-ATHGGLIHVICNDYGCLEATKFINNVQ 613

Query: 556  KLSARWIGN-HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
            +L   ++ + + F+IGI D     E+ +     I+      +  I     GKL+  PG  
Sbjct: 614  RLINHFMFHINSFTIGIGDTIINPEIIEDCKSNIANAIHNVDELINMAKLGKLEKLPGLT 673

Query: 615  AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
               T E+ +  ILN+ R+  G+  + +     + +I+S  GSKGS INI+QM +CVGQQ+
Sbjct: 674  IENTFESKVNLILNKARDYKGEITLCN---NMNAMILS--GSKGSKINIAQMTSCVGQQN 728

Query: 675  VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
            V G+R P GF  R+LPHF +      ++GF++NS+ +G++  EF+FH MGGREGL+DTA+
Sbjct: 729  VEGKRIPFGFEKRTLPHFQKFDYSAISRGFISNSYLTGMTPQEFYFHAMGGREGLIDTAI 788

Query: 735  KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFD 794
            KTA+TGY+ RRL+KA+ED  ++ D+SVRN  G I QF YG+DG +   +E         D
Sbjct: 789  KTAETGYIQRRLVKAMEDAVVRSDSSVRNGFGKIYQFAYGEDGFNGKILEKIILNKPTKD 848

Query: 795  RLLMKVK-ATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQD--- 850
               + +   T      +   P++V E+++  +     +  +  + N L + +    +   
Sbjct: 849  EFYIDINDITNTLRNNKSFIPREVIELLKTDVEI---QKLNNEYYNYLEQNYSLLDNGMY 905

Query: 851  -------------KLDKKIK-------FVEDIGWDDKSQILEEVTHKTSGITEKQLEVFI 890
                         KL+ +IK         ++I     + +L       S   +K L+   
Sbjct: 906  VTPVNIQRILLNKKLNNRIKCNLSPYIIYDEIEKLKTNNLLWNYYVSYSLNPKKLLQTQT 965

Query: 891  QTCFS--------RYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
            ++ F         + +  +VE    +G + AQS+GEP TQMTL TFH AGVAS  IT GV
Sbjct: 966  KSNFMEIVNTIKIKLKEAQVEPNEMVGTLAAQSVGEPATQMTLNTFHLAGVAST-ITMGV 1024

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PR+ EIIN  K I TP++  +L+ ND + + + ++ +IE + L  + +S  ++    +  
Sbjct: 1025 PRLNEIINTTKNIKTPLMIVQLQKNDLQ-SCKNLRNKIEYSSLKDLYESFLLLYDPIITD 1083

Query: 1003 IVIALDMETIQD-------------AHLCINADIVKESIVQ--------TPKIKLKQQHI 1041
             ++  D E +++             +  CI  ++ K  ++           KIKL  + +
Sbjct: 1084 TILDEDKELVENYFEMPDEIDLDKCSSFCIRFELNKYHVIGRGLDLEYIIEKIKLNIKSM 1143

Query: 1042 KVLDFRKLEIFPP------------VDKSKIHFELYS-LKNVLPMVIVKGIKTVERVVIA 1088
              +    +   P              DK K + + Y+ L + L  + ++G++ +++  + 
Sbjct: 1144 LDIGIHIIYSLPTDEKLILRIRLILNDKIKENLKFYNELVDKLLNIHIQGLEGIKKAYLI 1203

Query: 1089 EKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARI 1148
              + +            + L  +G   Q ++    +DG  T SN +FE+ +TLG+EA R 
Sbjct: 1204 HNKDD-----------TWTLQTDGINYQTILSFPNVDGSHTTSNDLFEIYETLGVEALRE 1252

Query: 1149 CIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQK-MDKSVLMLASFEKT 1207
             I+ E+   ++ +G  ++ RH+ LL+D+MT  G   GITR G+ + +  S L  ASFE+T
Sbjct: 1253 TIMTELTMVIENNGSYVNSRHLSLLSDVMTVCGYPSGITRHGVNREIKASALKRASFEET 1312

Query: 1208 ADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG----ILKIRQRDAV 1251
             D L  A+    ++   G++E I+MG   PLGTG    IL I++ D +
Sbjct: 1313 VDILLEAAATAEENPAHGITENIMMGQLAPLGTGNIQLILDIKKLDQI 1360


>gi|170039594|ref|XP_001847615.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167863133|gb|EDS26516.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 1303

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 338/670 (50%), Positives = 443/670 (66%), Gaps = 21/670 (3%)

Query: 578  KELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKA 637
            ++L ++K KL+   Y  C+  I E  +G LQ +PGC A QTLEAV+   L+ IRE A KA
Sbjct: 633  RKLLEEKQKLLENGYSRCDEYIAEMKKGTLQCQPGCTAEQTLEAVMLKELSSIRELAAKA 692

Query: 638  CMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAK 697
            C   L   NS LIM+Q GSKGS INISQM+ACVGQQ++ G+R PNGF DR+LPHF + +K
Sbjct: 693  CFRELHPTNSALIMAQSGSKGSNINISQMIACVGQQAINGKRVPNGFEDRALPHFEKFSK 752

Query: 698  EPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQY 757
             PAA+GFV NSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+K LEDL +QY
Sbjct: 753  IPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVQY 812

Query: 758  DNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQV 817
            D +VRNA G +V+F YG DG+DP  ME K+ +P++ +R  M V+   P   +  L   ++
Sbjct: 813  DGTVRNAIGEVVEFTYGADGLDPVFMEVKN-KPVDIERQFMHVRNMFPCRDEAPLRGAEI 871

Query: 818  SEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHK 877
             E  +K L     + C   F     +F +    K  +++  V+   ++  +++  EV   
Sbjct: 872  LETGDKILQTAEFDGCRADFRKECLEFLK----KFGERLHSVQS-RYNTDAKVSLEVERT 926

Query: 878  TSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN 937
            T G    QL+ F+     +Y     E GTA+GA+ AQSIGEPGTQMTLKTFHFAGVASMN
Sbjct: 927  TPG----QLKKFLMQVRDKYNKAITEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMN 982

Query: 938  ITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            ITQGVPRI EIIN  K ISTPIITAE+  N +   AR VK RIEKT LG+++  I+ V  
Sbjct: 983  ITQGVPRIVEIINATKAISTPIITAEIADNTSMEFARKVKARIEKTTLGEISSYIEEVYK 1042

Query: 998  SRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP-PVD 1056
            S    ++I LD++ I+   L +NA+ ++ SI  T K+KLKQ++++V     + I P P  
Sbjct: 1043 SDDCFLLIKLDLDRIRVLGLEVNAETIRYSIC-TSKLKLKQENVEVYGPSLIIIRPDPTK 1101

Query: 1057 KSK-IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGL 1115
             S  ++ EL  L + +P V+V G+  V R VIA        V +      Y+L VEG GL
Sbjct: 1102 HSHALNAELQRLLSAIPNVVVAGLPQVSRAVIA--------VDDAHGPPTYKLCVEGYGL 1153

Query: 1116 QAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLAD 1175
            + VM   G+ G +TKSN+I EV  TLGIEAAR  I++EI + M+ HGMS+D RH+MLLA 
Sbjct: 1154 RDVMATYGVVGARTKSNNILEVYVTLGIEAARTTIMNEITDVMEGHGMSVDHRHIMLLAS 1213

Query: 1176 LMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIP 1235
             MT RGEVLGITR G+ KM +SV  LASFEKTADHLF+A+  G+ D I+GVSE II+G+P
Sbjct: 1214 QMTSRGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDSIDGVSERIILGMP 1273

Query: 1236 MPLGTGILKI 1245
              +GTG+ K+
Sbjct: 1274 AAIGTGLFKL 1283



 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/602 (42%), Positives = 371/602 (61%), Gaps = 43/602 (7%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD--RSK- 57
           + NP +  L K  +   ++KK    A K  KCP CG +NG VKK   ++ I+H+  R K 
Sbjct: 129 LTNPNLSYLAKKSIHSQVLKK----AKKNTKCPCCGCLNGPVKKGAGLMKIVHEPFRGKK 184

Query: 58  -----VTESLQEFASAITHTKESKAAVNVATYI--LNPVNVLFLFKRMTDTDCEVLYLSE 110
                VT +L E   AI   +E    V  ++ I  LNP+ VL LFK +  +D  +L ++ 
Sbjct: 185 ATDPLVTSALDEMLGAIEGNRELSQTVGPSSLIKELNPLEVLDLFKNIPKSDIPLLGMTS 244

Query: 111 ---RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANS 166
               P  LI+T + VPP+ IRPSV+ +  + + E+D+T +   I+  +  + + ++    
Sbjct: 245 PESNPADLIVTRVFVPPVCIRPSVVSEVKAGTTEDDLTMKQSEILLISDVITKHMMSGGK 304

Query: 167 AFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVE 226
                  W+ LQ+  A Y NS++ G+P S+   +P  G VQRLKGKQGRFRGNLSGKRV+
Sbjct: 305 IELIQEDWDYLQLHCALYFNSELSGIPLSLMPKKPTRGIVQRLKGKQGRFRGNLSGKRVD 364

Query: 227 YTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIR 286
           ++ RTVISPDPNL I +V +P R+A+ILT+PERV+  NI ++RQ I+NG +K+PGA  ++
Sbjct: 365 FSARTVISPDPNLMIHQVGVPDRVAKILTFPERVNTANINRMRQLIKNGTEKHPGANYVQ 424

Query: 287 YPDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIM 344
                 +  + YG  R+++A +LK G IV+RHL DGDVVLFNRQPSLH++SIMCH A++ 
Sbjct: 425 QKGSAFKKYLAYGN-RDKVAQDLKCGDIVERHLMDGDVVLFNRQPSLHKLSIMCHVAKVQ 483

Query: 345 PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAS 404
           P RT RFNE  C PYNADFDGDEMN+H+PQTEEAR EAL+LMG ++NL TP+NGE+L+A+
Sbjct: 484 PQRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALVLMGNKSNLVTPRNGELLIAA 543

Query: 405 TQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLF 461
           TQDF+T  +L+T+KD F  R     +   M  G D    +DLP PAI+KP +LWTGKQ+F
Sbjct: 544 TQDFITGGYLLTQKDQFLTREQVMQLAACMLSGPDANMEIDLPKPAIIKPRKLWTGKQIF 603

Query: 462 SVLIRPHANMRVYVNLTVKEKTYSN-KLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 520
           S++++P+ +  V  NL+ K + Y+  K IR   +E+   + +  N    Y R  E I+ +
Sbjct: 604 SLILKPNRHSVVNANLSTKGRNYTTGKDIRKLLEEK---QKLLENG---YSRCDEYIA-E 656

Query: 521 LGKATL----GNGNKDGLYSVLLRDYGA---HATSGCMNRLAKLSARWI----GNHGFSI 569
           + K TL    G   +  L +V+L++  +    A   C   L   ++  I    G+ G +I
Sbjct: 657 MKKGTLQCQPGCTAEQTLEAVMLKELSSIRELAAKACFRELHPTNSALIMAQSGSKGSNI 716

Query: 570 GI 571
            I
Sbjct: 717 NI 718


>gi|402586876|gb|EJW80813.1| DNA-directed RNA polymerase, partial [Wuchereria bancrofti]
          Length = 735

 Score =  606 bits (1562), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 318/683 (46%), Positives = 441/683 (64%), Gaps = 29/683 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-AVLGIIHDRSKVT 59
           + NP ++ LR+  L K IV      + K   C RCG+ NG+VKKAV AVL I H      
Sbjct: 69  VNNPNLDYLRRKALHKRIV----AASKKITVCNRCGHKNGIVKKAVGAVLKIAHAEVIPA 124

Query: 60  ESLQEFASAITHTKESKAAVNVATY-ILNPVNVLFLFKRMTDTDCEVLYL-----SERPE 113
           ++  E+  A    KE +  +    + +L+P+ V  LF ++   D  +L +      + P 
Sbjct: 125 DNYSEYVYAAQENKELQNLLPKTKFTLLDPLQVQILFNKIEKEDIPLLMVRSADTPKHPS 184

Query: 114 KLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLA 172
            +I+T I VPP  IRPSV+ +  S + E+DIT +L  I+  N  +++   E +       
Sbjct: 185 DVILTRIPVPPCCIRPSVVSEVKSGTTEDDITMKLSEIMLINDVIEKHKREGSPTKTISE 244

Query: 173 GWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTV 232
            W+ LQV+ A YINS++ G+P  MQ  R   GF QRLKGKQGRFRGNLSGKRV+++GRTV
Sbjct: 245 TWDHLQVQCALYINSELSGLPPDMQPKRATRGFTQRLKGKQGRFRGNLSGKRVDFSGRTV 304

Query: 233 ISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA-RMIRYPDGT 291
           ISPDPNL+I +V +P+ +A+ILT+PE V+  NIE++R+ I NG D +PGA  ++    G 
Sbjct: 305 ISPDPNLRIDQVGVPVHVAKILTFPEIVNKANIERMRKLILNGDDIHPGANHIVERATGN 364

Query: 292 ARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRF 351
            R L    R   A +LK G I++RHL+D DVVLFNRQPSLH++SIM HRA+I+  RT RF
Sbjct: 365 KRFLKYGNREITAAQLKVGDIIERHLDDNDVVLFNRQPSLHKISIMSHRAKIVRGRTFRF 424

Query: 352 NESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTS 411
           NE  C PYNADFDGDEMN+HVPQT EAR EA LLMGV++NL TP++GE L+A+ QDF+T 
Sbjct: 425 NECACTPYNADFDGDEMNLHVPQTYEARAEASLLMGVKSNLITPRSGEPLIAAIQDFITG 484

Query: 412 SFLITRKDTFYDRAAFSLMCCYMGDG----MDRVDLPTPAILKPVELWTGKQLFSVLIRP 467
           ++L+T KD+F+ R+        + D       R+ +P PAILKPVELWTGKQL  ++IRP
Sbjct: 485 TYLLTHKDSFFPRSEVHRFAAAIIDSSSKKQQRIQIPPPAILKPVELWTGKQLIELIIRP 544

Query: 468 HANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLG 527
             + ++ +NLT K K+Y+       G+EE      C  D +V  RNS L+ G L KA LG
Sbjct: 545 DVDSKINLNLTTKNKSYT-------GNEE-----FCVKDSYVIIRNSVLLCGVLDKALLG 592

Query: 528 NGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKL 587
           +G+K  ++ +LLRD+G  A    M RL +++  ++ N GFSIGI DV+P K L  +K  L
Sbjct: 593 SGSKTNIFYILLRDFGEDAAVDAMWRLGRMAPVFLSNRGFSIGIGDVRPSKALLKEKSDL 652

Query: 588 ISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNS 647
           +S  Y++C+  I+   EG+L+ +PGC  ++TLEA+I   L+ IR+ AG+AC+ +L   N+
Sbjct: 653 LSNGYKICDDYIESLKEGRLKAQPGCTESETLEALILKELSAIRDHAGQACLRNLSRHNA 712

Query: 648 PLIMSQCGSKGSPINISQMVACV 670
           PL M+ CGSKGS INISQM+ACV
Sbjct: 713 PLTMAVCGSKGSFINISQMIACV 735


>gi|260943858|ref|XP_002616227.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
 gi|238849876|gb|EEQ39340.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
          Length = 1402

 Score =  603 bits (1556), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 431/1285 (33%), Positives = 662/1285 (51%), Gaps = 188/1285 (14%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L P  +L +FK ++  DC  L  +E   RPE ++IT + VPP  +RPS+  + +   E+
Sbjct: 160  LLTPSEILSVFKHISSEDCHRLGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGED 219

Query: 142  DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
            D+T +L  II+ N ++Q+  ++ +     S F++L     LQ  VA Y+++D+ G P ++
Sbjct: 220  DLTFKLADIIKANINVQRLEMDGSPQHVISEFEAL-----LQFHVATYMDNDIAGQPQAL 274

Query: 197  Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            Q   RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +P+ +AR LT
Sbjct: 275  QKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPLSIARTLT 334

Query: 256  YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
            YPE V+ +NI +L + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+
Sbjct: 335  YPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVE 392

Query: 315  RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
            RHL D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 393  RHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 452

Query: 375  TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
            ++E R E   +  V   + +P++ + ++   QD L     +T +D F  Y++    L   
Sbjct: 453  SQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYEQVMNMLYWI 512

Query: 433  YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
               DG+    +P PAI+KP  LW+GKQ+ S+ I    +++ +                 +
Sbjct: 513  PNWDGV----IPPPAIIKPKPLWSGKQILSMAIPKGIHLQRF----------------DD 552

Query: 493  GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
            G++      + P D  +   + E+I G + K T+G     GL   ++R+ G+   +   +
Sbjct: 553  GND-----MLSPKDKGILIVDGEIIFGVVDKKTVG-ATGGGLIHTVMREKGSQVCAQLFS 606

Query: 553  RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
             + K+   W+ ++GFSIGI D    K+        I E  +     I +  + +L+ +PG
Sbjct: 607  SIQKVVNYWLLHNGFSIGIGDTIADKDTMRDVTTTIQEAKQKVQEIIMDAQQNRLEPEPG 666

Query: 613  CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
                ++ E  ++ +LN+ R+ AG++   +L   N+   M   GSKGS INISQM ACVGQ
Sbjct: 667  MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 726

Query: 673  QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
            Q V G+R P GF DR+LPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DT
Sbjct: 727  QIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 786

Query: 733  AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLN 792
            AVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D   +E +S +   
Sbjct: 787  AVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTAVEKQSVD--- 843

Query: 793  FDRLLMKVKATCPPAGQRYLSPQQV-----SEIVEKQLAAYGKESCSEAFLNSLRKFFEG 847
                      T P +  ++    ++     S+ + + L   GKE   +     L+K  + 
Sbjct: 844  ----------TIPGSDAKFEKRYRIDLLDPSKSISESLLDSGKEIKGDV---KLQKVLDS 890

Query: 848  QQDKLDKKIKFVE-------DIGW----------DDKSQI------------LEEVTHKT 878
            + ++L K  K++        D  W           +  QI            L+E+    
Sbjct: 891  EYEQLLKDRKYLREVCFPNGDFNWPLPVNLRRIIQNAQQIFHSGRQRASDLKLDEIVEGV 950

Query: 879  SGITEKQLEV---------------FIQTCFSR-----------YRVKRVEAGTAIGAIG 912
              +  K L +                +  C  R           +++ R+      G I 
Sbjct: 951  KALCSKLLVIRGKSRLAKEAQEDATLLFQCLVRSRLAARRIIEEFKLSRISFEWVCGEIE 1010

Query: 913  AQ---SIGEPG---------------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
             Q   SI  PG               TQMTL TFH+AGV+S N+T GVPR+KEI+N AK 
Sbjct: 1011 TQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKN 1070

Query: 955  ISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T  L  E   +   A+VV+  IE T L  V  + +I       S VI  D +T+
Sbjct: 1071 IKTPALTVYLDPEIASDIEKAKVVQSAIEHTTLKNVTSATEIFYDPDPRSTVIEEDYDTV 1130

Query: 1013 QDAHLCINADIVKESI-VQTPK-IKLKQQHIKVLDFRKL---------------EIF--- 1052
            + A+  I  + V+E+I  Q+P  ++L+    K+LD ++L               ++F   
Sbjct: 1131 E-AYFAIPDEKVEETIDNQSPWLLRLELDRAKMLD-KQLTMAQVAEKISQNFGEDLFVIW 1188

Query: 1053 -----------------PPVDKSKIHFELYSLKNV----LPMVIVKGIKTVERVVIAE-K 1090
                             P +++   H E   LK V    L  + ++GI  + RV + + K
Sbjct: 1189 SDDTADKLIIRCRVIRDPKLEEEGDHEEDQILKRVEAHMLESISLRGIPGITRVFMMQHK 1248

Query: 1091 EKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICI 1150
                 +  E  +K+++ L  +G  L  V+   G+D  +T SN+  E+   LGIEA R  +
Sbjct: 1249 MSTPDESGEFSQKQEWVLETDGVNLAEVIAVPGVDSSRTYSNNFIEILSVLGIEATRSAL 1308

Query: 1151 IDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADH 1210
              EI   +   G  ++ RHM LL D+MT RG ++  TR GI + +   LM  SF +    
Sbjct: 1309 YKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLMARTRHGINRAETGALMRCSFRRNGRD 1368

Query: 1211 LFN--ASVNGRDDRIEGVSECIIMG 1233
             F    S    DD   G+SE +I G
Sbjct: 1369 SFGCWCSCPSWDD-CRGISENVIFG 1392


>gi|316997009|dbj|BAJ52632.1| RNA polymerase III largest subunit [Paramecium tetraurelia]
          Length = 899

 Score =  601 bits (1549), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 361/920 (39%), Positives = 507/920 (55%), Gaps = 88/920 (9%)

Query: 369  NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 428
            N+H+PQT EAR+EAL+LM V+ NL T K+GE LV   QDFLT+++LIT KD FY R  F 
Sbjct: 1    NIHLPQTYEARSEALILMDVKKNLKTIKSGESLVCLLQDFLTTAWLITNKDVFYSREQFM 60

Query: 429  LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKE-KTYSNK 487
              C    D  +++DLP P ILKP +LWTGKQ+ + L+ P+   R+ +NL  KE   +  K
Sbjct: 61   QFCAAFSDSNEQIDLPAPTILKPKQLWTGKQVINALLVPNRKTRLVLNLEAKESNAFKGK 120

Query: 488  LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
            L     D         P DG+V F   EL+ G +GK  LG  +K GL+  L+RD      
Sbjct: 121  LDYLWMD---------PGDGYVVFDKCELVCGNIGKKVLG-ASKLGLFYALIRDNSTQIA 170

Query: 548  SGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL 607
            +  M R AKLS+RWI ++G +IGI DV   K L ++  +   ++Y  C    K Y    +
Sbjct: 171  ASVMQRFAKLSSRWISHYGMTIGIGDVMAPKSLIEQIHQSTEQSYLQC----KHYQRSLI 226

Query: 608  QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
               PG    QTLEA +   L+ +RE  G  C   L   N  LIM  CG+KGS +N++QM+
Sbjct: 227  DADPGLTVEQTLEAKVNKTLSDVREQVGSKCQEQLKSDNKVLIMYLCGAKGSNVNVAQMI 286

Query: 668  ACVGQQSVGGRRAPNGFIDRSLPHFPRKAK--------EPAAKGFVANSFYSGLSATEFF 719
             CVGQQ + G+R P GF  R+LPHF              P AKGFV NSFY+G+ A EF+
Sbjct: 287  GCVGQQVISGKRVPEGFTGRTLPHFKDCGDRYPNLDILHPKAKGFVKNSFYTGMDAIEFY 346

Query: 720  FHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC-IVQFLYGDDGM 778
            FH M GREGL DTAVKTA TGYM RRL+K LEDL I YD +VR+     IVQF YG+DG+
Sbjct: 347  FHNMAGREGLTDTAVKTATTGYMQRRLVKMLEDLHIAYDLTVRSCDTKEIVQFRYGEDGL 406

Query: 779  DPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFL 838
            DP  +E  + E +    LL     T     Q  L+ + +   +++      +        
Sbjct: 407  DPLAVED-ANEVIKLQNLLTN-SFTVLRKNQILLNKEHMLIKLDELFMIIEERH------ 458

Query: 839  NSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYR 898
               +KF E  +   +K+ K V+ +      Q           ++EKQL+ FI++   R+ 
Sbjct: 459  ---KKFLENYEATYEKEKKRVQALFKSTNQQ-----------VSEKQLQWFIRSWMERFL 504

Query: 899  VKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTP 958
               +  GT++G I +QSIGEP TQMTLKTFH AGVA M+ITQGVPR+ EIIN +K I TP
Sbjct: 505  TMVMAPGTSVGPITSQSIGEPATQMTLKTFHSAGVAGMSITQGVPRLNEIINASKEIKTP 564

Query: 959  IITAEL---ECNDN------------ENAARV----------VKGRIEKTLLGQVAKSIK 993
             I  +L   +  D+            E A R           V  +IE+T L Q+ K + 
Sbjct: 565  QINVKLINRQVMDHAKQFAKSGDPQYEYAHRAVIHSAQQAQDVNIQIEQTKLMQILKKMD 624

Query: 994  IVMTSRLASIVIALD--------METIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLD 1045
             + T+    I + LD        +E +   ++C  A I+KE  +    +K     +K++ 
Sbjct: 625  EIYTADNCYIELELDCHCLARLKLEFVTPKYVC--ALILKELKLSPDDVKYD---LKIIR 679

Query: 1046 FRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKK 1105
                +         + F +  L+  L  + + G   +++ VI   +K+    KEN  K +
Sbjct: 680  ITVKKSSKKKQSENLLFLIKELQRKLLRLHIYGCANIKQTVIQVTDKDD---KEN-VKGE 735

Query: 1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
             RL   G G + ++  + ID  +T SNHI E+Q  LGIEAAR  I++E+  TM++H +SI
Sbjct: 736  ARLFASGIGFKEILRLDNIDWKRTVSNHIMEIQSALGIEAARQSIVNEVYTTMQSHSISI 795

Query: 1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
            D RH++LLA+LMTF+G +LG TR GI ++  S LMLASFEKT D  FNA++ G+ D + G
Sbjct: 796  DIRHILLLAELMTFKGRILGFTRQGIDQLKNSALMLASFEKTMDVFFNAAIQGKQDSMNG 855

Query: 1226 VSECIIMGIPMPLGTGILKI 1245
             S+ +I+G  +P GTG+  +
Sbjct: 856  ASQRVIIGQNVPQGTGMFDL 875


>gi|428180807|gb|EKX49673.1| Rpb1, RNA polymerase II largest subunit [Guillardia theta CCMP2712]
          Length = 1473

 Score =  600 bits (1547), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 401/1239 (32%), Positives = 640/1239 (51%), Gaps = 107/1239 (8%)

Query: 92   LFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLK 148
            L + +R+TD DCE L L     RP+ +I+  +AV P  +RP+++ D     E+DIT +L 
Sbjct: 212  LAILRRITDEDCEKLGLDPRFARPDWMIVQVVAVSPPHVRPAIMTDSGSRGEDDITFKLG 271

Query: 149  RIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQV-ARPLSGFVQ 207
             +I+ N  L+Q         +       LQ  +A   N+++ G P +     + +    Q
Sbjct: 272  DVIKANNHLKQLKESGAPPSQRRESQMLLQYHLATMYNNELAGQPQAQHRNGKAIKSLRQ 331

Query: 208  RLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEK 267
            R+KGK+GR RGNL GKRV+++ RTVI+ DP +   +V +P  +A  +T+PE VS HNIE 
Sbjct: 332  RIKGKEGRVRGNLMGKRVDFSARTVITGDPTISCDQVGVPRSIAYNMTFPEIVSIHNIEN 391

Query: 268  LRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNR 327
            +R  + NGPD++PGA+ I   DG  RV     + Q    L  G IV+R ++D D V+FNR
Sbjct: 392  MRNLVMNGPDQHPGAKSIVRSDGK-RVDLRFVKMQSDQILDYGYIVERQMQDDDCVIFNR 450

Query: 328  QPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMG 387
            QPSLH+MS+M HR +IMP+ T R N SV +PYNADFDGDEMN+H+PQ+ E ++E   +M 
Sbjct: 451  QPSLHKMSMMGHRVKIMPYSTFRLNLSVTSPYNADFDGDEMNLHLPQSYETKSEIYNIMM 510

Query: 388  VQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPA 447
            V   + +P+    ++   QD L    ++TR++TF ++     +  ++     RV  P PA
Sbjct: 511  VPFQIVSPQKNAPVMGIVQDTLLGCSVLTRRNTFVEKDLMMNVLMHVPGFDGRV--PIPA 568

Query: 448  ILKPVE----LWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMC 503
            I+K       LWTGKQ+ S+ I    + R+ ++   + KT        E   ++  +TM 
Sbjct: 569  IVKAPNNKGPLWTGKQVLSLAI---PSRRINLSKLNQYKT-------DEDTGDVFKQTMT 618

Query: 504  PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIG 563
             ND  +   + E+++G +  + +   ++ GL  +   D G       +N    +   W+ 
Sbjct: 619  INDAHIVIEDGEILTGSVDSSVIKT-SQGGLVHMCWADLGPAGARDLLNNTQIIVNHWLL 677

Query: 564  NHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
             +G+S+G+ D+    E     G  I    +     ++++ +G L+ +PGC   Q  E  +
Sbjct: 678  QNGWSVGVSDIVASAETIKAIGASIDAAKKDVQGFVEQWQQGSLKKQPGCTMHQVFEMQV 737

Query: 624  TDILNRIREDAGKACMGSLPWR-NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPN 682
               LN    D        + +  N    M + GSKG+ IN+ Q++A VGQQ++   R P 
Sbjct: 738  NSRLNNALSDGSNIVQRGIKFALNRINEMRKSGSKGTDINLCQIIALVGQQNIENCRIPY 797

Query: 683  GFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYM 742
            GF  R+LPHF +      ++GFV NS+  GL+  E +FH MGGREGL+DTAVKT++TGY+
Sbjct: 798  GFKRRTLPHFRKDDPGAESRGFVENSYTQGLTPQELYFHAMGGREGLIDTAVKTSETGYI 857

Query: 743  SRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK--- 799
             RRLIKALED+ ++YD +VRN+ G ++QF YG+DG+D   +  +    L   +  ++   
Sbjct: 858  QRRLIKALEDVVVRYDGTVRNSLGSVIQFAYGEDGLDATFLLSQKPPTLEMRKAQLRDNY 917

Query: 800  -VKATCPPAGQRYLSPQQVSEIV------------EKQLAAYGKESCSEAFLNSLRKFFE 846
             +    P + + Y+     S+I              +Q+    +E  S+ F +S     E
Sbjct: 918  FIDLDKPESIKNYVHSDIRSQIAGDLEVRDRLKKEYEQIETDQEELRSKIFADS---SLE 974

Query: 847  GQQDKLDKKIKFVEDIGWDDKS-QILEEVTHKTSGITEKQLEV----------------F 889
            G +D L +++K     G D+ S +     TH  + I   Q  V                 
Sbjct: 975  GVRD-LSERLKVALFPGEDNISIEARNNATHLFNIILRSQFAVKKVMAGHRLNKKAFDWI 1033

Query: 890  IQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII 949
            +    S++R   V  G ++G I +QS+GEP TQMTL TFHFAGV++   T+GVPR+KE+I
Sbjct: 1034 LGEVESKFRRAIVNPGESVGCIASQSLGEPVTQMTLNTFHFAGVSAKKGTKGVPRMKELI 1093

Query: 950  NGAKRISTPIITAELECN--DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIAL 1007
            N AK I  P I+  L+    ++E+ A+ +  +IE   L  + K  +I          +  
Sbjct: 1094 NIAKNIKAPGISIYLKEGHFEDEHKAKAISNKIEYLNLRLLVKHAEIHYEPNPLLTRVPE 1153

Query: 1008 DMETIQDAHLCINAD-------IVKESIVQTPKIKLKQQHIKVL-------------DFR 1047
            D + I +AH  +  +        V   ++  P +  K  ++  +             +F 
Sbjct: 1154 D-QAIVEAHYELADEPPKNMSPWVLRFVLDNPTLDGKDMYLSEVVAKIKETYHTGRDEFE 1212

Query: 1048 -------------KLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEK 1094
                         +L +    DK  + F   ++ ++L  + ++GI  + RV+I E++K  
Sbjct: 1213 IIASDDNADLLVIRLRLLTRSDKYVLAFGKIAM-DMLDTITLRGIPDIPRVLI-EQDKLY 1270

Query: 1095 RKV--KENGEKKKYR------LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAA 1146
             K+   ++ + +KY       L  EG  L  V+    +D  +T SN I E+ Q LGIEA 
Sbjct: 1271 HKLFSPDDPKYEKYNKAVPSYLYAEGNNLLRVLSFAEVDQVRTVSNDITEILQVLGIEAV 1330

Query: 1147 RICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEK 1206
            R  ++ EI E M+A    ++ RH+  L D+MT RG ++ ITR GI +++   LM  +FE+
Sbjct: 1331 RCALLKEIREVMRASSY-VNYRHIACLVDVMTHRGILMSITRHGINRLETGPLMRCTFEE 1389

Query: 1207 TADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            T + L  A+     DR  GV+E +I+G   PLGTG  ++
Sbjct: 1390 TVEILLEAAAFSMPDRCLGVAENVILGNLCPLGTGSFEL 1428


>gi|194758651|ref|XP_001961575.1| GF14868 [Drosophila ananassae]
 gi|190615272|gb|EDV30796.1| GF14868 [Drosophila ananassae]
          Length = 1301

 Score =  597 bits (1540), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 332/695 (47%), Positives = 436/695 (62%), Gaps = 23/695 (3%)

Query: 564  NHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
            N GFS GI DV P K L + K  L+   Y  CN  I++   G LQ +PGC   +TLE+V+
Sbjct: 612  NRGFSFGISDVTPSKRLLEHKEYLLQRGYAKCNEYIEKLKAGTLQCQPGCTPEETLESVM 671

Query: 624  TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
               L+ IRE A K C   L   NS LIM+  GSKGS INISQM+ACVGQQ++ G+R PNG
Sbjct: 672  LRELSGIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNG 731

Query: 684  FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
            F +R+LPHF R +  PAA+GFV NSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ 
Sbjct: 732  FENRALPHFDRHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQ 791

Query: 744  RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKAT 803
            RRL+K LEDL + YD +VRNA   +V  +YG DG+DP +ME ++ +P++       ++A 
Sbjct: 792  RRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVSMETRN-KPVDLVHQYDNLRAQ 850

Query: 804  CPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIG 863
              P  Q  L   ++ E  E            E F   +RK  +     + K+I  +++  
Sbjct: 851  IHPGQQPPLRGSEIPEAAESLFKTPEFAESREDFKEDVRKHLK----TVSKRISLLQE-K 905

Query: 864  WDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQM 923
            +D    +  ++      +T +QL  F++    RY     E GTA+GAI AQSIGEPGTQM
Sbjct: 906  YDPYGNLCNQI----ECLTTEQLLEFLRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQM 961

Query: 924  TLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKT 983
            TLKTFHFAGVASMNITQGVPRI EIIN  K ISTPIITAEL+ N +   AR VK RIEKT
Sbjct: 962  TLKTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAELQDNLSMEFARQVKARIEKT 1021

Query: 984  LLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKV 1043
             LG+++  +++V       + I +DM  I+   L IN D +  SI+++ +++LK   ++V
Sbjct: 1022 TLGELSSYVEVVCGPHCCYLAIGIDMSRIKLLGLHINLDTIVASILKS-RMRLKPAQVEV 1080

Query: 1044 L-DFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGE 1102
              D R +        + I+ EL  L   L  V+V G+  + R VIA        V +  +
Sbjct: 1081 ARDSRIVVRVEATKNATINSELARLALSLQSVVVAGLPNINRAVIA--------VDDARQ 1132

Query: 1103 KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHG 1162
               Y+L +EG GL+ V+   G+ G  T+SN+I E+ QTLGIEAAR  I+ EI E M+ HG
Sbjct: 1133 PATYKLCIEGYGLRDVIATYGVVGVHTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHG 1192

Query: 1163 MSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDR 1222
            MS+D RH+MLLA  MT RGEVLGITR G+ KM +SV  LASFEKTADHLF+A+  G+ D 
Sbjct: 1193 MSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDA 1252

Query: 1223 IEGVSECIIMGIPMPLGTGILKI---RQRDAVPPM 1254
            I GVSE II+G+P  +GTGI K+    +   VPP+
Sbjct: 1253 INGVSERIILGMPAGIGTGIFKLLHCHENKQVPPI 1287



 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/508 (44%), Positives = 324/508 (63%), Gaps = 24/508 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD------ 54
           + NP    L K  L   ++ K    A K  KCP CG  NG VKK   +L I+HD      
Sbjct: 127 LHNPNFSYLGKKALHVQMLAK----AKKVTKCPHCGSPNGGVKKGPGLLKILHDPYKGRK 182

Query: 55  -RSKVTESLQEFASAITHTKESKAAVNVATYI--LNPVNVLFLFKRMTDTDCEVLYLSER 111
             S  T ++ E   +    ++  A ++  +    L P+ VL LF+++  +D  +L +  R
Sbjct: 183 VDSAFTNNMNEMLRSTEANRDLNATLSSYSTAEELTPLMVLDLFEQIPQSDVALLGMCSR 242

Query: 112 ---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              P+ LI+T + VPP  IRPSV+ +  + + E+D+T +   I+  N  +Q+ +      
Sbjct: 243 GAHPKNLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKI 302

Query: 168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                 W+ LQ+ VA Y +S++ G+P +M   +   G VQRLKGKQGRFR NLSGKRV++
Sbjct: 303 ELIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDF 362

Query: 228 TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY 287
           +GRTVISPDPNL I +V +P+R+A+ILTYPERV+  N+  +RQ ++NGP  +PGA  ++ 
Sbjct: 363 SGRTVISPDPNLMINQVGVPVRVAKILTYPERVNQANMRHMRQLVRNGPSTHPGANYVQQ 422

Query: 288 PDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
              + +  + YG  R ++A EL+ G IV+RHL D D+VLFNRQPSLH+MSIMCHRA++ P
Sbjct: 423 RGSSFKKYLAYGN-REKVAQELRCGDIVERHLRDDDIVLFNRQPSLHKMSIMCHRAKVQP 481

Query: 346 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
            RT RFNE  C PYNADFDGDEMN+H+PQTEEAR EAL+LMG Q+NL TPKNGEIL+A+T
Sbjct: 482 QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAAT 541

Query: 406 QDFLTSSFLITRKDTFYDR-AAFSLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS 462
           QDF+T  +L+T+K+ F  +  A  L  C++   D    +++P PA+LKP  LWTGKQ+FS
Sbjct: 542 QDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIEMPPPALLKPRRLWTGKQMFS 601

Query: 463 VLIRP-HANMRVYVNLTVKEKTYSNKLI 489
           +L+RP H +     +  + + T S +L+
Sbjct: 602 LLMRPNHDSQNRGFSFGISDVTPSKRLL 629


>gi|340502584|gb|EGR29261.1| RNA polymerase domain 2 family protein [Ichthyophthirius multifiliis]
          Length = 1496

 Score =  597 bits (1539), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 393/1168 (33%), Positives = 607/1168 (51%), Gaps = 159/1168 (13%)

Query: 111  RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
             P+ LI++ I VPP  +RP + +  +   ++++T+  ++I++ N    QE+ + N   K 
Sbjct: 240  HPKDLILSRIFVPPPQVRPFIELQSTFVCQDEMTKCYQKIVKLN----QEIKQGNVNEKE 295

Query: 171  LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
                E +Q  VA+ I++    +P      + +  F QRL GK+GRFR NL GKRV+++ R
Sbjct: 296  HV--ELIQNIVARMIDNQKPKLPSLKIKTKTIKSFSQRLSGKEGRFRQNLMGKRVDFSAR 353

Query: 231  TVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKY--PGARMIRYP 288
            TVISPD NL + E+ +P  +A  LT PE V+  NI  ++Q   +G  KY     ++ +  
Sbjct: 354  TVISPDANLALDELGVPRSIADTLTVPEIVNQQNINMIKQLWNDGKIKYVMKPNKIKQIY 413

Query: 289  DGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 348
            +G   ++    RN +   +  G I++R L+DGD VLFNRQP+LH+MS+M H+ +I+PW T
Sbjct: 414  EGFDAIISNSARNIIEEHINDGVIIERTLQDGDFVLFNRQPTLHKMSMMGHKVKILPWST 473

Query: 349  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDF 408
             R N SVC PYNADFDGDEMN+HVPQ+ E R E   +  V   + TPK+ + ++   QD 
Sbjct: 474  FRLNLSVCTPYNADFDGDEMNLHVPQSYETRAEIKHVCHVPRQIITPKSNKPVMGLVQDS 533

Query: 409  LTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
            L    L T +D F  R     +  ++ +     ++P PAILKP +LW+GKQ+ S+LI   
Sbjct: 534  LLGISLFTLRDCFVKRKNLFNLIMWIDNW--EGEIPMPAILKPEKLWSGKQVISMLIPNR 591

Query: 469  ANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGN 528
             +M               K+     D+E         D  +Y    EL+ G + KA +G+
Sbjct: 592  ISMM--------------KIGGKNSDDE---RWFSIKDDSIYIYKGELLQGYMTKAIVGD 634

Query: 529  GNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQP----KKELSDKK 584
                GL  ++  D G  AT   + R  ++   W+   G +I   D+ P    +KE+   K
Sbjct: 635  S-PGGLVHLIWLDIGTQATCDFITRSQRIINNWLIMQGHTISCQDIVPSEICQKEMEKIK 693

Query: 585  GK-LISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLP 643
            G+  I+    + + +  +  E     K G     + E  I  ILN++R  A K C  +  
Sbjct: 694  GQAFIAFENALNDFQDAKKIEDMGLHKSGKRIFDSFEVYINSILNKLRGIAEKKCRETTN 753

Query: 644  WR-NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
            +R N    M   GSKG P N++Q++  VGQQ++ G R  NGFI R+LPHF +      A+
Sbjct: 754  FRLNQFNKMVWAGSKGKPTNLAQVMGFVGQQNIEGARIGNGFIRRTLPHFTKDDNGILAR 813

Query: 703  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
            GF+ ++F+ GL   EFFFH MGGREGL DTAVKT+ TGY+ R+LIKALED+ ++YD +VR
Sbjct: 814  GFITSNFFQGLRPFEFFFHMMGGREGLSDTAVKTSRTGYIQRKLIKALEDVIVKYDGTVR 873

Query: 763  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
            ++ G I+Q  YG+DG+                            AG+ ++  Q+++E+  
Sbjct: 874  DSNGTIIQTSYGEDGL----------------------------AGE-FIESQRITEV-- 902

Query: 823  KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
                    E  +E F               +K+ +F++D+   D  +I+  V HK   I+
Sbjct: 903  --------ELSNEVF---------------EKEFRFLKDL---DNQKIV--VRHK---IS 931

Query: 883  EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
             ++ E  +Q    +Y+      G AIGAI AQSIGEP TQMTL TFHFAGV+  N+T GV
Sbjct: 932  PEKFEQILQEVEFKYKQAISHPGEAIGAIAAQSIGEPTTQMTLNTFHFAGVSDRNVTLGV 991

Query: 943  PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            PR++EI++ +K++ TP      EC                          +I     L S
Sbjct: 992  PRLQEILDASKKMKTP------EC--------------------------RIYFEENLQS 1019

Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQ------------------QHIKVL 1044
            I      E  Q     I    V++ I+QT  +  KQ                    I   
Sbjct: 1020 I------EAKQIMRQQIEYQEVQKYILQTTILYYKQDEDNIFDEDEEEEEEDDENQINQK 1073

Query: 1045 DFRKLEIFPPV---DKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENG 1101
            +++KLE +  +   DK   +  L  ++  L  + + GIK +++V   EKE +     +NG
Sbjct: 1074 EYKKLESWKLIFKLDKRNPYISLLEVEKSLTNLYISGIKKIDKVYPTEKENQHNFDSKNG 1133

Query: 1102 EK---KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETM 1158
            ++   K+   +  G+ L+ ++   GI+   T +N++ E+ ++LGIEAAR  II+E+ E +
Sbjct: 1134 KQIKDKEIIFITSGSNLKQILKIPGINPFLTYTNNLQEISESLGIEAARRSIINELREVI 1193

Query: 1159 KAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKM-DKSVLMLASFEKTADHLFNASVN 1217
            + + + I+ RH+ +LAD MT RG +  I R GI K+ + S L  ASFE+T D L NA++ 
Sbjct: 1194 EPYDLYINYRHLSILADWMTLRGRITPINRMGINKIVNLSCLRKASFEETVDILNNAAIF 1253

Query: 1218 GRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             + D++ G++E II G    LGTG   +
Sbjct: 1254 CQKDKLAGITENIIFGQYCDLGTGCFDL 1281


>gi|403223272|dbj|BAM41403.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
          Length = 1645

 Score =  596 bits (1536), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 419/1325 (31%), Positives = 662/1325 (49%), Gaps = 149/1325 (11%)

Query: 15   MKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKE 74
            M   +  C   +    K   CGY   +  K    L I     K T+  +E        +E
Sbjct: 144  MSKPITNCQFKSQSVSKVQGCGYPQPIFTKEGPNLMI-----KFTQKQREVL------EE 192

Query: 75   SKAAVNVATYILNPVNVLFLFKRMTDTDCEVL-YLSER--PEKLIITNIAVPPIAIRPSV 131
            ++   +     L P     + K +T  D + L ++ ER  P  LI+  + VPP A+RP V
Sbjct: 193  AEEPCDDIQRPLAPEEAFKVLKGITTEDMKYLGFVPERSQPSWLILNVLPVPPPAVRPYV 252

Query: 132  IMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRG 191
               GS  +E+D+T +L  +++TN  +++    A +        + LQ  +    ++D+ G
Sbjct: 253  -QYGSDRSEDDLTLKLLDVLKTNNLIKRHDKRATAPHIIQEMCQLLQFHITTLFDNDIPG 311

Query: 192  VPF-SMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRM 250
            +P  S +  +P+     RLKGK+GR RGNL GKRV+++ RTVI+ DPN+ I  + +P  +
Sbjct: 312  MPVASTRSKKPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNIPIDTIGVPKSI 371

Query: 251  ARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSG 310
            A  LT+ E V+  N E LR+ ++ GP  +PGA+ I   DGT R      +    ++L+ G
Sbjct: 372  AMTLTFCETVNSLNYESLRKKVEVGPHDWPGAKYIIREDGT-RFDLRHVKKSSELQLEYG 430

Query: 311  CIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNM 370
              V+RH++DGD +LFNRQPSLH+MSIM H+A+I+P+ T R N SV  PYNADFDGDEMN+
Sbjct: 431  YKVERHMQDGDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLSVTTPYNADFDGDEMNL 490

Query: 371  HVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLM 430
            H+ Q+ E R E   LM V   + +P+    ++   QD L +    T++DTF  R     +
Sbjct: 491  HLVQSHETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSLLAVSKFTKRDTFLTRDELMSL 550

Query: 431  CCYM--GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKL 488
              ++   DG     LP PAI  P  LWTGKQ+ SVL+               +   +  L
Sbjct: 551  LIWIPYWDG----KLPQPAIFFPKNLWTGKQVISVLL----------TFNQAQGITNINL 596

Query: 489  IRTEGDEEIRIE----TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA 544
            IR   D  I++E        ND  V  R +E +SG + K T+G  +   L  +L  + G 
Sbjct: 597  IR---DGSIKLEKDNLNCSVNDSRVIIRKNEHLSGIICKKTVG-CSSGSLIHILWHEAGP 652

Query: 545  HATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNE 604
                  +  L K+   W    GF++   D+       +K  K++ ++ +     + +  +
Sbjct: 653  EKCRDFLTTLQKVVNNWFLQVGFTVSCSDICCSTTTLNKVSKILDKSKKEVQKLVLQAQK 712

Query: 605  GKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINIS 664
            GKL+ +PG    ++ EA +   LN  RE +G     SL   N+ L M   GSKGS INIS
Sbjct: 713  GKLKCQPGKSLFESFEARVNKELNDAREQSGSVVASSLNISNNILSMVNSGSKGSTINIS 772

Query: 665  QMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMG 724
            Q++ACVGQQ+V G+R P GF DRSLPHF +    P ++GFV+NS+ SGL+  E FFH MG
Sbjct: 773  QIIACVGQQNVEGKRIPFGFKDRSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFHAMG 832

Query: 725  GREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
            GREG++DTA KT++TGY+ RRL+KA+ED+ +QYD + RN  G I+QFLYG+DGM    +E
Sbjct: 833  GREGIIDTACKTSETGYVQRRLMKAMEDVMVQYDRTARNGNGEILQFLYGEDGMGAEYIE 892

Query: 785  GKSGEPLNFDRLLMKVKATCPPAGQRY--------------LS--PQQVSEIVEKQ-LAA 827
             +  + +  D   M  +       + Y              LS   QQV  + E Q L  
Sbjct: 893  DQQIDLMTMDDEEMNRRFNHDFRSESYGLGWILNEEIRNTILSDFSQQVILVEEYQKLVD 952

Query: 828  YGKESCSEAFLN---------SLRKFFEGQQDKLDKKIKFVEDIGWDD----KSQILEE- 873
              K  C E F N         ++++  E    +          +   D     +++LE  
Sbjct: 953  LKKMICEEIFPNGDHAQHLPVNIKRILEYATTQFPATTSSRNQLNPVDIALRTNKLLENM 1012

Query: 874  VTHKTSGIT-------EKQLEVFIQTCF-----SRYRVKRVEAGT-AIGAIGAQ------ 914
            +   TSG T       ++   + I+        SRY ++ V+ G  A+  +  +      
Sbjct: 1013 IIITTSGPTDVLSEEAQQNATILIKAHLRCNLNSRYLMEYVQIGNLALDWVYGEVERCFF 1072

Query: 915  -SIGEPG---------------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTP 958
             +I  PG               TQMTL TFHFAGV+S N+T G+PR+KE+IN    + TP
Sbjct: 1073 KAIANPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVTNVRTP 1132

Query: 959  IITAELECN--DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAH 1016
             +T  L+ N   ++  A+ ++ ++E T   ++ ++  ++    + S ++  D E ++D +
Sbjct: 1133 SLTIYLDANISKDQERAKEMQTQLEYTNFERLVENYSVIYDPVVNSTIVKEDYEWVRDYY 1192

Query: 1017 LCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIV 1076
                                  +     + R L++     +++  F    + +VL  + +
Sbjct: 1193 ---------------------DEFSNGEEERMLQLV----ETEAEFLNKFMTDVLSNIKL 1227

Query: 1077 KGIKTVERVVIAEKEKEKRKVKENGEK------KKYRLLVEGTGLQAVMGAEGIDGCKTK 1130
            +G+K + +V +    +E+   + NG         ++ L  +G  L+ V+    ++  KT 
Sbjct: 1228 RGVKGITKVYM----REETFTRYNGATGSFDRVSQWVLDTDGCNLENVLPIPCVEYTKTF 1283

Query: 1131 SNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFG 1190
            SN + E+    GIEAAR  ++ EI   +   G  ++ RH+ LL D+MT +G ++ ITR G
Sbjct: 1284 SNDVSEIFNVFGIEAARRALLREIRAVISFDGAYVNYRHLSLLCDIMTQKGYLMSITRHG 1343

Query: 1191 IQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI----- 1245
            + + D+  L+  SFE+T + L +A+     D + GV+E +++G   P GTG   I     
Sbjct: 1344 LNRADRGPLVKCSFEETLETLLSAAAFSEVDPLRGVTENVVVGQLSPYGTGCFDIMIDEL 1403

Query: 1246 RQRDA 1250
            + RDA
Sbjct: 1404 KLRDA 1408


>gi|124513306|ref|XP_001350009.1| DNA-directed RNA polymerase 3 largest subunit [Plasmodium falciparum
            3D7]
 gi|23615426|emb|CAD52417.1| DNA-directed RNA polymerase 3 largest subunit [Plasmodium falciparum
            3D7]
          Length = 2356

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 278/498 (55%), Positives = 360/498 (72%), Gaps = 9/498 (1%)

Query: 300  RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
            +N +   L  G +V+RH+ DGD+VLFNRQPSLHRMSIMCH+A+IM ++T RFNE VC+PY
Sbjct: 549  KNHVIQNLNIGDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIMDFKTFRFNECVCSPY 608

Query: 360  NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
            NADFDGDEMN+HVPQTEEAR EAL LM V++NL TPKNGE+++A TQDFL++S++IT KD
Sbjct: 609  NADFDGDEMNLHVPQTEEARAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKD 668

Query: 420  TFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTV 479
            TF DR  F L+C Y  D    ++LP PAILKP ELWTGKQL SVLI+P+      +N  +
Sbjct: 669  TFLDRDTFCLLCSYFSDASLYIELPIPAILKPKELWTGKQLISVLIKPNKKENTIINFEI 728

Query: 480  KEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLL 539
            +E+ YSNK     GD    ++ +C ND +V F  SELI G LGK  LG+  K GL+  L+
Sbjct: 729  QEREYSNKF----GD----LKHLCLNDSYVCFYKSELICGSLGKKVLGSS-KYGLFYYLI 779

Query: 540  RDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKI 599
                +H     MNRL+KL++R+  N G +IGIDDV+P + L++KK  L+ + YE  N +I
Sbjct: 780  HHNSSHIALKIMNRLSKLTSRYFSNKGMTIGIDDVRPSQTLTEKKKDLLLKGYEKVNNEI 839

Query: 600  KEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGS 659
              YNE K+Q++PGC   +TLE  +  IL+ +R DAGK C   L + N PLIM   G+KG+
Sbjct: 840  ILYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCNQYLHYLNKPLIMFNSGAKGA 899

Query: 660  PINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFF 719
             INI+QM+ACVGQQ+V G+R  NGFI+R+LPHF    K+  ++GFV NSFY+GLS TEFF
Sbjct: 900  LINIAQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFF 959

Query: 720  FHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
            FHTM GREGLVDTAVKTA+TGYM RRL+KALEDLSI YD SVR+    IVQF+YGDD ++
Sbjct: 960  FHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSCDKQIVQFIYGDDALN 1019

Query: 780  PANMEGKSGEPLNFDRLL 797
            P+ ++  +     FD++ 
Sbjct: 1020 PSYIDNNNTYLDQFDKVF 1037



 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 113/284 (39%), Positives = 160/284 (56%), Gaps = 23/284 (8%)

Query: 7   EALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFA 66
           ++  K  L K I+  C     K  KC  CG   G++KK +              SL +F 
Sbjct: 154 DSFYKKHLFKRILNNCK----KVNKCYICGNPQGVIKKIIK------------PSLDQFM 197

Query: 67  --SAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPP 124
               I   KE+   + +    LN + VL LFK +     ++L + E PEKLIIT + VPP
Sbjct: 198 KLKHILKVKENGKMI-IKEEDLNSLYVLKLFKNINPYHVKLLNI-ENPEKLIITALLVPP 255

Query: 125 IAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQY 184
             IRPSVI+D   + E+D+T  L  I Q N ++  +        + L   E LQ+++ ++
Sbjct: 256 NTIRPSVIIDEHGTAEDDLTCILSEITQLNNTIYNQCTNGYQTNQFLGNVEFLQLQITRF 315

Query: 185 INSD---VRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKI 241
           INSD   V  +  +  +++P  G  QRLKGK+GRFR NLSGKRV+++ RTVISPDPN+ I
Sbjct: 316 INSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRTVISPDPNISI 375

Query: 242 TEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI 285
            EV IP  +A  LTYPE V+ +NI+KL+  I+NG +K+PGA  I
Sbjct: 376 DEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPGANYI 419



 Score =  164 bits (415), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/223 (44%), Positives = 136/223 (60%), Gaps = 4/223 (1%)

Query: 874  VTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGV 933
            + H  S I  KQL +FI     +Y       G A+G+I AQSIGEPGTQMTLKTFHFAGV
Sbjct: 1760 IIHDYSFINLKQLYLFIFFNIYKYFKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFAGV 1819

Query: 934  ASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIK 993
            ASMN+T GVPRIKEIIN +  I TPI+   LE NDN N A ++K ++EKT +  +   IK
Sbjct: 1820 ASMNVTLGVPRIKEIINASNSIQTPILNIPLEVNDNYNFALMMKSKLEKTTIRDICMYIK 1879

Query: 994  IVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTP---KIKLKQQHIKVLDFRKLE 1050
               TSR   + +  + E IQ   L INA  +K+ I++     KIK+ + HI V++  KL 
Sbjct: 1880 EDYTSRGVFLSVKFNEELIQKLFLNINAYNIKDIILKQSHINKIKINKIHINVINKYKLH 1939

Query: 1051 IFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKE 1093
            I    D+  I F++ SLK  L  +++ G K ++R +I +++ E
Sbjct: 1940 ISLKNDEF-IFFQMESLKKGLLDLLIYGDKDIKRCIIKKEDIE 1981



 Score =  152 bits (385), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 74/140 (52%), Positives = 98/140 (70%)

Query: 1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
            Y +LVEG  L  V+G EG+D     SNH+  V Q LGIEAARI II+EI + ++A+ + I
Sbjct: 2190 YSILVEGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSIDI 2249

Query: 1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
            D RH+MLLAD+M F G++LGI RFGIQK  +S LMLASFE+T +HLF +S     D I  
Sbjct: 2250 DIRHIMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEINN 2309

Query: 1226 VSECIIMGIPMPLGTGILKI 1245
            +SE II+G  +P+GTG  ++
Sbjct: 2310 ISESIIVGKNIPIGTGAFQL 2329


>gi|422295501|gb|EKU22800.1| DNA-directed RNA polymerase III subunit RPC1, partial
           [Nannochloropsis gaditana CCMP526]
          Length = 535

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 299/555 (53%), Positives = 386/555 (69%), Gaps = 34/555 (6%)

Query: 169 KSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYT 228
           +S A WE L      Y    +RG+              QRLKGK GRFRGNLSGKRV+++
Sbjct: 8   RSAARWEEL---AGHYGEKKIRGL-------------CQRLKGKSGRFRGNLSGKRVDFS 51

Query: 229 GRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYP 288
           GRTVISPDPNL I +V +P+++A+I+TYPERVS  N E+L++ + NGP  +PGA +IR P
Sbjct: 52  GRTVISPDPNLAIDQVGVPLQVAKIMTYPERVSASNRERLKRLVLNGPSHHPGANIIR-P 110

Query: 289 DG----TARVLYG--KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRAR 342
            G    T  + Y   + R ++A +LK G +V+RH+ D DVVLFNRQPSLH++SIM HR +
Sbjct: 111 SGDNAFTKSLSYADERQRRKMAEDLKLGDVVERHMVDEDVVLFNRQPSLHKLSIMAHRVK 170

Query: 343 IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILV 402
           +MPWRT RFNE VC PYNADFDGDEMNMH+PQTEEAR EA  LMGV +NL TP+NGE +V
Sbjct: 171 VMPWRTFRFNECVCAPYNADFDGDEMNMHLPQTEEARAEAATLMGVTSNLVTPRNGEPMV 230

Query: 403 ASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFS 462
           A+TQDF+T ++L+T+KD F  R AF  +  Y+GD  + +DLP P+I+ P +LWTGKQ+FS
Sbjct: 231 AATQDFITGAYLLTQKDVFLTREAFCRLAAYLGDAAEHIDLPPPSIVWPHQLWTGKQVFS 290

Query: 463 VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
           +LI+    +   VNL ++E+ YS    + E      +  +CP DGFV  R SEL+SG L 
Sbjct: 291 LLIKASHRVDCDVNLEMEERNYS----KAEA-----MAYLCPQDGFVCIRRSELVSGNLC 341

Query: 523 KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH-GFSIGIDDVQPKKELS 581
           K TLG G K GLY VLLRD GA   + CMNRLAKL  R IG H GFSIGIDDV P   L 
Sbjct: 342 KKTLG-GQKGGLYYVLLRDKGAEHAARCMNRLAKLCGRLIGGHRGFSIGIDDVMPSPVLL 400

Query: 582 DKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGS 641
           D K  L+   +  C+ +I+ Y  GKL LKPGC++ Q+LE+ +  +L  IR   G+  +  
Sbjct: 401 DLKRVLLEAGFSKCDEQIRLYETGKLPLKPGCNSLQSLESELNSVLGGIRRKCGEEALQK 460

Query: 642 LPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAA 701
           LPW N+P IM++CGSKGS INISQM+A +GQQSVGG+R  NGF++R+LPHF  ++  PAA
Sbjct: 461 LPWHNAPRIMTECGSKGSDINISQMMAILGQQSVGGKRIENGFVNRTLPHFRPESLFPAA 520

Query: 702 KGFVANSFYSGLSAT 716
           +GFV NSF+SGL+AT
Sbjct: 521 RGFVPNSFFSGLTAT 535


>gi|133354|sp|P27625.1|RPC1_PLAFA RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
            polymerase III subunit C1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit; AltName: Full=RNA
            polymerase III subunit C160
 gi|160596|gb|AAA29729.1| RNA polymerase III largest subunit [Plasmodium falciparum]
          Length = 2339

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 277/498 (55%), Positives = 359/498 (72%), Gaps = 9/498 (1%)

Query: 300  RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
            +N +   L  G +V+RH+ DGD+VLFNRQPSLHRMSIMCH+A+IM ++T RFNE VC+PY
Sbjct: 549  KNHVIQNLNIGDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIMDFKTFRFNECVCSPY 608

Query: 360  NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
            NADFDGDEMN+ VPQTEEAR EAL LM V++NL TPKNGE+++A TQDFL++S++IT KD
Sbjct: 609  NADFDGDEMNLDVPQTEEARAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKD 668

Query: 420  TFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTV 479
            TF DR  F L+C Y  D    ++LP PAILKP ELWTGKQL SVLI+P+      +N  +
Sbjct: 669  TFLDRDTFCLLCSYFSDASLYIELPIPAILKPKELWTGKQLISVLIKPNKKENTIINFEI 728

Query: 480  KEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLL 539
            +E+ YSNK     GD    ++ +C ND +V F  SELI G LGK  LG+  K GL+  L+
Sbjct: 729  QEREYSNKF----GD----LKHLCLNDSYVCFYKSELICGSLGKKVLGSS-KYGLFYYLI 779

Query: 540  RDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKI 599
                +H     MNRL+KL++R+  N G +IGIDDV+P + L++KK  L+ + YE  N +I
Sbjct: 780  HHNSSHIALKIMNRLSKLTSRYFSNKGMTIGIDDVRPSQTLTEKKKDLLLKGYEKVNNEI 839

Query: 600  KEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGS 659
              YNE K+Q++PGC   +TLE  +  IL+ +R DAGK C   L + N PLIM   G+KG+
Sbjct: 840  ILYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCNQYLHYLNKPLIMFNSGAKGA 899

Query: 660  PINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFF 719
             INI+QM+ACVGQQ+V G+R  NGFI+R+LPHF    K+  ++GFV NSFY+GLS TEFF
Sbjct: 900  LINIAQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFF 959

Query: 720  FHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
            FHTM GREGLVDTAVKTA+TGYM RRL+KALEDLSI YD SVR+    IVQF+YGDD ++
Sbjct: 960  FHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSCDKQIVQFIYGDDALN 1019

Query: 780  PANMEGKSGEPLNFDRLL 797
            P+ ++  +     FD++ 
Sbjct: 1020 PSYIDNNNTYLDQFDKVF 1037



 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/284 (39%), Positives = 160/284 (56%), Gaps = 23/284 (8%)

Query: 7   EALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFA 66
           ++  K  L K I+  C     K  KC  CG   G++KK +              SL +F 
Sbjct: 154 DSFYKKHLFKRILNNCK----KVNKCYICGNPQGVIKKIIK------------PSLDQFM 197

Query: 67  --SAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPP 124
               I   KE+   + +    LN + VL LFK +     ++L + E PEKLIIT + VPP
Sbjct: 198 KLKHILKVKENGKMI-IKEEDLNSLYVLKLFKNINPYHVKLLNI-ENPEKLIITALLVPP 255

Query: 125 IAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQY 184
             IRPSVI+D   + E+D+T  L  I Q N ++  +        + L   E LQ+++ ++
Sbjct: 256 NTIRPSVIIDEHGTAEDDLTCILSEITQLNNTIYNQCTNGYQTNQFLGNVEFLQLQITRF 315

Query: 185 INSD---VRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKI 241
           INSD   V  +  +  +++P  G  QRLKGK+GRFR NLSGKRV+++ RTVISPDPN+ I
Sbjct: 316 INSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRTVISPDPNISI 375

Query: 242 TEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI 285
            EV IP  +A  LTYPE V+ +NI+KL+  I+NG +K+PGA  I
Sbjct: 376 DEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPGANYI 419



 Score =  164 bits (415), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/223 (44%), Positives = 136/223 (60%), Gaps = 4/223 (1%)

Query: 874  VTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGV 933
            + H  S I  KQL +FI     +Y       G A+G+I AQSIGEPGTQMTLKTFHFAGV
Sbjct: 1749 IIHDYSFINLKQLYLFIFFNIYKYFKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFAGV 1808

Query: 934  ASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIK 993
            ASMN+T GVPRIKEIIN +  I TPI+   LE NDN N A ++K ++EKT +  +   IK
Sbjct: 1809 ASMNVTLGVPRIKEIINASNSIQTPILNIPLEVNDNYNFALMMKSKLEKTTIRDICMYIK 1868

Query: 994  IVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTP---KIKLKQQHIKVLDFRKLE 1050
               TSR   + +  + E IQ   L INA  +K+ I++     KIK+ + HI V++  KL 
Sbjct: 1869 EDYTSRGVFLSVKFNEELIQKLFLNINAYNIKDIILKQSHINKIKINKIHINVINKYKLH 1928

Query: 1051 IFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKE 1093
            I    D+  I F++ SLK  L  +++ G K ++R +I +++ E
Sbjct: 1929 ISLKNDEF-IFFQMESLKKGLLDLLIYGDKDIKRCIIKKEDIE 1970



 Score =  152 bits (385), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 74/140 (52%), Positives = 98/140 (70%)

Query: 1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
            Y +LVEG  L  V+G EG+D     SNH+  V Q LGIEAARI II+EI + ++A+ + I
Sbjct: 2173 YSILVEGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSIDI 2232

Query: 1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
            D RH+MLLAD+M F G++LGI RFGIQK  +S LMLASFE+T +HLF +S     D I  
Sbjct: 2233 DIRHIMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEINN 2292

Query: 1226 VSECIIMGIPMPLGTGILKI 1245
            +SE II+G  +P+GTG  ++
Sbjct: 2293 ISESIIVGKNIPIGTGAFQL 2312


>gi|195566972|ref|XP_002107049.1| GD17239 [Drosophila simulans]
 gi|194204446|gb|EDX18022.1| GD17239 [Drosophila simulans]
          Length = 723

 Score =  590 bits (1520), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 332/713 (46%), Positives = 440/713 (61%), Gaps = 38/713 (5%)

Query: 554  LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
            L  +++ ++ N GFS GI DV P K+L   K  L++  Y  CN  I     G LQ +PGC
Sbjct: 21   LNNIASYFLQNRGFSFGISDVTPSKKLLQHKELLLNNGYAKCNEYIDLLKAGTLQCQPGC 80

Query: 614  DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
               +TLE+V+   L+ IRE A K C   L   NS LIM+  GSKGS INISQM+ACVGQQ
Sbjct: 81   TPEETLESVMLRELSAIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQ 140

Query: 674  SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
            ++ G+R PNGF +R+LPHF R +  PAA+GFV NSFYSGL+ TEFFFHTM GREGLVDTA
Sbjct: 141  AISGKRVPNGFENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTA 200

Query: 734  VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
            VKTA+TGY+ RRL+K LEDL + YD +VRNA   +V  +YG DG+DP +ME ++ +P++ 
Sbjct: 201  VKTAETGYLQRRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVSMETRN-KPVDL 259

Query: 794  DRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAF-------LNSLRKFFE 846
                  ++A  P    R L+ +++SE +E  L         + F       +N++ K   
Sbjct: 260  VHQYDNLRAQHPQGTDRPLNAEEMSEALETLLKTPEFAEARDDFKLDVRNHINTVSKRIG 319

Query: 847  GQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGT 906
              Q + +K I                   H+   +T +QL  F++    RY     E GT
Sbjct: 320  QLQKRYEKCINLC----------------HQIECLTTEQLLQFVRRINDRYNRAVTEPGT 363

Query: 907  AIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELEC 966
            A+GAI AQSIGEPGTQMTLKTFHFAGVASMNITQGVPRI EIIN  K ISTPIITAELE 
Sbjct: 364  AVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAELEN 423

Query: 967  NDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKE 1026
              +   AR VK RIEKT L +++  +++V       + I +DM  I+   L I+ D +  
Sbjct: 424  CHSMEFARQVKARIEKTTLAELSSYVEVVCGPYSCYLAIGVDMARIKLLGLHIDLDTIVF 483

Query: 1027 SIVQTPKIKLKQQHIKVL--DFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVER 1084
            SI+++ ++++K   ++ +    R +        S I+ EL  L   L  V+V G+  + R
Sbjct: 484  SILKS-RMRVKPTQVETVASQSRIVVRVEATRTSTINAELARLALCLQNVVVAGLPNINR 542

Query: 1085 VVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
             VIA        V +  +   Y+L +EG GL+ V+   G+ G +T+SN+I E+ QTLGIE
Sbjct: 543  AVIA--------VDDARQPPTYKLCIEGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIE 594

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  I+ EI E M+ HGMS+D RH+MLLA  MT RGEVLGITR G+ KM +SV  LASF
Sbjct: 595  AARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASF 654

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRD---AVPPM 1254
            EKTADHLF+A+  G+ D I GVSE II+G+P  +GTGI K+ Q      VPP+
Sbjct: 655  EKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTGIFKLLQLHEDKQVPPI 707


>gi|195048078|ref|XP_001992466.1| GH24768 [Drosophila grimshawi]
 gi|193893307|gb|EDV92173.1| GH24768 [Drosophila grimshawi]
          Length = 1303

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 340/706 (48%), Positives = 446/706 (63%), Gaps = 43/706 (6%)

Query: 564  NHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
            N GFS GI DV P  +L   K  L+   Y  CN  I++   G LQ +PGC   +TLEAV+
Sbjct: 612  NRGFSFGISDVTPSAKLLQHKQVLLERGYAKCNEYIEKLKSGTLQCQPGCTPEETLEAVM 671

Query: 624  TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
               L+ IRE A K C   L   NS LIM+  GSKGS INISQM+ACVGQQ+V G+R PNG
Sbjct: 672  LRELSGIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAVSGKRVPNG 731

Query: 684  FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
            F +R+LPHF R +  PAA+GFV NSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGY+ 
Sbjct: 732  FENRALPHFERHSAIPAARGFVGNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQ 791

Query: 744  RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKAT 803
            RRL+K LEDL + YD +VRNA   +V  +YG DG+DP +ME ++ +P++       ++A 
Sbjct: 792  RRLVKCLEDLVVHYDGTVRNAINEMVDTIYGGDGLDPVSMETRN-KPVDLHHQYDNLRAQ 850

Query: 804  CPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQD-KLD--KKIKFVE 860
             P   Q    P Q  EI+          S ++  L   ++F E + D KLD    +K V 
Sbjct: 851  QPIGDQL---PLQYDEIL----------SVADWMLKQ-KEFKEARADFKLDVTNHLKMVS 896

Query: 861  D-IG-----WDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQ 914
              IG     + ++ Q+L    ++   I+++QL  F++    RY     E GTA+GAI AQ
Sbjct: 897  KRIGQLQQRYGEQHQVL---CNQIESISQEQLLEFLRRINDRYNRAVTEPGTAVGAIAAQ 953

Query: 915  SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAAR 974
            SIGEPGTQMTLKTFHFAGVASMNITQGVPRI EIIN  K ISTPIITAEL  N +   AR
Sbjct: 954  SIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKSISTPIITAELRNNKSMEFAR 1013

Query: 975  VVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKI 1034
             VK RIEKT LG+++  +++V       +VI +D   I+   L I+ D +  SI+++ ++
Sbjct: 1014 QVKARIEKTTLGELSSYVELVCGPYSCHLVINIDAARIKVLGLYIDLDTIIASILKS-RL 1072

Query: 1035 KLKQQHIKVLDFRKLEIFPPVDKSK---IHFELYSLKNVLPMVIVKGIKTVERVVIAEKE 1091
            ++K   +  +  +K  I   V+ +K   I+ EL  L   +  V+V G+  + R VIA   
Sbjct: 1073 RIKPGQVHAIP-KKSRIIIRVESTKNATINAELARLAITIQNVVVGGLPNIARAVIA--- 1128

Query: 1092 KEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICII 1151
                 V +  +   Y+L +EG GL+ V+   G+ G KT+SN+I E+ QTLGIEAAR  I+
Sbjct: 1129 -----VDDAQQPPTYKLCIEGYGLRDVIATYGVIGEKTRSNNICEIYQTLGIEAARTVIM 1183

Query: 1152 DEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHL 1211
             EI + M+ HGMS+D RH+MLLA  MT RGEVLGITR G+ KM +SV  LASFEKTADHL
Sbjct: 1184 SEITDVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHL 1243

Query: 1212 FNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRD---AVPPM 1254
            F+A+  G+ D I GVSE II+G+P  +GTGI K+ Q      VPP+
Sbjct: 1244 FDAAYYGQMDAINGVSERIILGMPAGIGTGIFKLLQHHEDKQVPPI 1289



 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/486 (46%), Positives = 311/486 (63%), Gaps = 23/486 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
           + NP    L K  L   ++ K    A K  KCP C   NG VKK   +L I HD  K  +
Sbjct: 127 LHNPNFSYLGKKALHSQMLAK----AKKVTKCPYCMASNGGVKKGPGLLKIQHDPYKGRK 182

Query: 61  SLQEFASAITH---TKESKAAVN------VATYILNPVNVLFLFKRMTDTDCEVLYLSER 111
               F + +     + E    +N       A   L P+ VL LF+++  +D  +L +  R
Sbjct: 183 KDAHFNNHMDEMLRSTELNRDLNQTLSNYSAAEELTPLMVLDLFEQIPQSDVALLGMCSR 242

Query: 112 ---PEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              P+ LI+T + VPP  IRPSV+ +  + + E+D+T +   I+  N  +Q+ +      
Sbjct: 243 GAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKI 302

Query: 168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
                 W+ LQ+ VA Y +S++ G+P +M   +   G VQRLKGKQGRFRGNLSGKRV++
Sbjct: 303 ELIHEDWDFLQLHVALYFHSEISGIPLNMAPKKTTRGIVQRLKGKQGRFRGNLSGKRVDF 362

Query: 228 TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRY 287
           +GRTVISPDPNL I +V +P+R+A+ILTYPERV+  NI  ++Q ++NGP  +PGA  ++ 
Sbjct: 363 SGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRIMKQLVRNGPSVHPGANYVQQ 422

Query: 288 PDGTAR--VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
              + +  + YG  R ++A ELK G IV+RHL D D+VLFNRQPSLH+MSIMCHRA++ P
Sbjct: 423 RGSSFKKYLAYGN-REKVAQELKCGDIVERHLRDDDIVLFNRQPSLHKMSIMCHRAKVQP 481

Query: 346 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
            RT RFNE  C PYNADFDGDEMN+H+PQTEEAR EAL+LMG Q+NL TPKNGEIL+A+T
Sbjct: 482 QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAAT 541

Query: 406 QDFLTSSFLITRKDTFYDRA-AFSLMCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS 462
           QDF+T  +L+T+K+ F  +  A  L  C++   D   R+ +P PAI KP  LWTGKQ+FS
Sbjct: 542 QDFITGGYLLTQKEVFLTKEDAMQLAACFLASEDSTLRIQMPPPAIWKPRRLWTGKQMFS 601

Query: 463 VLIRPH 468
           +L+RP+
Sbjct: 602 LLMRPN 607


>gi|397483770|ref|XP_003813067.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Pan
           paniscus]
          Length = 1267

 Score =  583 bits (1502), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 308/638 (48%), Positives = 416/638 (65%), Gaps = 35/638 (5%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
           ++ P +  L+K  L K I  KC     K   C  CG  NG VKK   +L IIH++ K   
Sbjct: 129 LKRPGLTYLQKRGLKKKISDKCR----KKNICHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183

Query: 58  ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
                 V+  LQ F +AI H KE +  +  A   LNP+ VL LFKR+   D  +L ++  
Sbjct: 184 KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243

Query: 111 --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
             +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  +++  +     
Sbjct: 244 AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303

Query: 168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
              +  W+ LQ++ A YINS++ G+P +M   +   GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304 QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363

Query: 228 TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
           +GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+  NI  LR+ +QNGP+ +PGA  I  
Sbjct: 364 SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQ 423

Query: 286 RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
           R+      + YG  R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424 RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482

Query: 346 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
            RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ 
Sbjct: 483 HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542

Query: 406 QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
           QDFLT ++L+T KDTF+DRA    +   +  G D   +V LP P ILKPV LWTGKQ+FS
Sbjct: 543 QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602

Query: 463 VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
           V++RP  +  V  NL  K K Y  K            E +C ND +V  +NSEL+SG + 
Sbjct: 603 VILRPSDDNPVRANLRTKGKQYCGK-----------GEDLCANDSYVTIQNSELMSGSMD 651

Query: 523 KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
           K TLG+G+K+ ++ +LLRD+G +  +  M+RLA+L+  ++ N GFSIGI DV P + L  
Sbjct: 652 KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711

Query: 583 KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
            K +L++  Y+ C+  I+  N GKLQ +PGC A +TLE
Sbjct: 712 AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLE 749



 Score =  467 bits (1202), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/516 (49%), Positives = 348/516 (67%), Gaps = 17/516 (3%)

Query: 742  MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVK 801
            + RRL+K+LEDL  QYD +VR++ G I+QF+YG DG+DPA MEGK  EPL F R+L  +K
Sbjct: 748  LERRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIK 806

Query: 802  ATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVED 861
            A  P   +  LS  ++    E  +       C ++FL  ++KF +G  +K+ K     + 
Sbjct: 807  AVFPCPSEPALSKNELILTTESIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDK 863

Query: 862  IGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGT 921
             G +D       V ++   IT  Q+E F++TC  +Y   ++E G+A+GA+ AQSIGEPGT
Sbjct: 864  YGINDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGT 923

Query: 922  QMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIE 981
            QMTLKTFHFAGVASMNIT GVPRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIE
Sbjct: 924  QMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIE 983

Query: 982  KTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHI 1041
            KTLLG++++ I+ V       I++ L +E I+   L +NA+ V+ SI  T K+++K   +
Sbjct: 984  KTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDV 1042

Query: 1042 KVLDFRKLEIFPPVD-KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKEN 1100
             V     + + P  + KS +++ L  LK  LP V+V+GI  V R VI         + E 
Sbjct: 1043 AVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQ 1094

Query: 1101 GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKA 1160
              K+KY+LLVEG  L+AVM   G+ G +T SN+ +EV++TLGIEAAR  II+EI  TM  
Sbjct: 1095 SGKEKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVN 1154

Query: 1161 HGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRD 1220
            HGMSID+RH+MLL+DLMT++GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ 
Sbjct: 1155 HGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQK 1214

Query: 1221 DRIEGVSECIIMGIPMPLGTGILKIRQ---RDAVPP 1253
            D + GVSECIIMGIPM +GTG+ K+     RD  PP
Sbjct: 1215 DSVCGVSECIIMGIPMNIGTGLFKLLHKADRDPNPP 1250


>gi|18977935|ref|NP_579292.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus DSM
           3638]
 gi|18893705|gb|AAL81687.1| DNA-directed RNA polymerase subunit a' [Pyrococcus furiosus DSM
           3638]
          Length = 907

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 317/740 (42%), Positives = 451/740 (60%), Gaps = 37/740 (5%)

Query: 80  NVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGS 136
           N   + L P  V    +++ D D  +L L     RPE +++T + VPP+  RPS+ ++  
Sbjct: 172 NEYRHRLMPTEVRDWLEKIPDKDLPLLGLDPEKSRPEWMVLTVLPVPPVTARPSITLETG 231

Query: 137 QSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS- 195
              E+D+T +L  II+ N  L+Q +            W+ LQ  V  YIN++  GVP + 
Sbjct: 232 IRAEDDLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDLLQYHVTTYINNEAPGVPPAK 291

Query: 196 MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            +  RPL    QRLKGK+GRFRGNLSGKRV ++ RTVISPDP + I EV +P+ +A  LT
Sbjct: 292 HKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPVEVAMELT 351

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
            PE+V++ NIE+LR+ + NGPDKYPGA  +  P+G  R +    +  LA +L  G  V+R
Sbjct: 352 VPEKVTEFNIERLRKMVLNGPDKYPGANYVIDPEGRRRRIMDSNKETLANQLDIGWTVER 411

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           HL DGD+VLFNRQPSLHRMSIM HR R+MP+RT R N +VC PYNADFDGDEMN+HVPQT
Sbjct: 412 HLMDGDIVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLAVCPPYNADFDGDEMNLHVPQT 471

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
           EEA+ EA +LM VQN++ +P+ G  ++   QD ++  +L+TR+  ++ R     M  +  
Sbjct: 472 EEAQAEARILMEVQNHIISPRYGGPIIGGIQDHISGGYLLTREGAYFTRDEVEQMLMFA- 530

Query: 436 DGMDRVDLPTPAILKP--VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI---- 489
            G+D  +LP P         LW+GK +FS+L+ P        +LTV    Y NKL     
Sbjct: 531 -GVDITELPEPDKYDENGNPLWSGKTIFSLLL-PE-------DLTV---WYRNKLCDEPE 578

Query: 490 RTEGDEEIRIETMCPN---------DGFVYFRNSELISGQLGKATLGNGNKDG-LYSVLL 539
           R E  E++  E + P+         DGFVY +N +L+SG + K     G +DG +  +++
Sbjct: 579 RCEALEKLIEEKLMPDPEEVRKLAYDGFVYIQNGKLLSGAIDKKAY--GREDGIILDLIV 636

Query: 540 RDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKI 599
           R+YG       ++++ KL+   I + GF+ GIDD    +E  D+  ++I E  E  N  I
Sbjct: 637 REYGVERARQFLDQVTKLTIWVITHKGFTTGIDDEDLPEEARDRIREIIREAEERVNKLI 696

Query: 600 KEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGS 659
           + Y  G+L+  PG     TLE++I  +L   R++AG      L   N  +IM++ G++G 
Sbjct: 697 EAYKRGELEPLPGKSLEDTLESLIMAVLAEARDNAGAVAEKYLGMDNHTVIMAKTGARGK 756

Query: 660 PINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFF 719
            +NI+QM A +GQQS+ G+R   GF  R L HF        AKGFV NS+ SGL+  E+F
Sbjct: 757 ILNITQMAALLGQQSIRGKRLYRGFRGRVLSHFKPGDLGARAKGFVVNSYKSGLTPQEYF 816

Query: 720 FHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           FH MGGREGLVDTAV+TA +GYM RRLI AL+DL ++YD +VR+  G IVQF YG+DG+D
Sbjct: 817 FHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVEYDGTVRSPEGIIVQFKYGEDGVD 876

Query: 780 PANMEGKSGEPLNFDRLLMK 799
           P  M+   G+ ++ DR++++
Sbjct: 877 P--MKSWRGKTVDVDRIIVR 894


>gi|397652056|ref|YP_006492637.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus COM1]
 gi|393189647|gb|AFN04345.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus COM1]
          Length = 910

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 317/740 (42%), Positives = 451/740 (60%), Gaps = 37/740 (5%)

Query: 80  NVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGS 136
           N   + L P  V    +++ D D  +L L     RPE +++T + VPP+  RPS+ ++  
Sbjct: 175 NEYRHRLMPTEVRDWLEKIPDKDLPLLGLDPEKSRPEWMVLTVLPVPPVTARPSITLETG 234

Query: 137 QSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS- 195
              E+D+T +L  II+ N  L+Q +            W+ LQ  V  YIN++  GVP + 
Sbjct: 235 IRAEDDLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDLLQYHVTTYINNEAPGVPPAK 294

Query: 196 MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            +  RPL    QRLKGK+GRFRGNLSGKRV ++ RTVISPDP + I EV +P+ +A  LT
Sbjct: 295 HKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPVEVAMELT 354

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
            PE+V++ NIE+LR+ + NGPDKYPGA  +  P+G  R +    +  LA +L  G  V+R
Sbjct: 355 VPEKVTEFNIERLRKMVLNGPDKYPGANYVIDPEGRRRRIMDSNKETLANQLDIGWTVER 414

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           HL DGD+VLFNRQPSLHRMSIM HR R+MP+RT R N +VC PYNADFDGDEMN+HVPQT
Sbjct: 415 HLMDGDIVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLAVCPPYNADFDGDEMNLHVPQT 474

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
           EEA+ EA +LM VQN++ +P+ G  ++   QD ++  +L+TR+  ++ R     M  +  
Sbjct: 475 EEAQAEARILMEVQNHIISPRYGGPIIGGIQDHISGGYLLTREGAYFTRDEVEQMLMFA- 533

Query: 436 DGMDRVDLPTPAILKP--VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI---- 489
            G+D  +LP P         LW+GK +FS+L+ P        +LTV    Y NKL     
Sbjct: 534 -GVDITELPEPDKYDENGNPLWSGKTIFSLLL-PE-------DLTV---WYRNKLCDEPE 581

Query: 490 RTEGDEEIRIETMCPN---------DGFVYFRNSELISGQLGKATLGNGNKDG-LYSVLL 539
           R E  E++  E + P+         DGFVY +N +L+SG + K     G +DG +  +++
Sbjct: 582 RCEALEKLIEEKLMPDPEEVRKLAYDGFVYIQNGKLLSGAIDKKAY--GREDGIILDLIV 639

Query: 540 RDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKI 599
           R+YG       ++++ KL+   I + GF+ GIDD    +E  D+  ++I E  E  N  I
Sbjct: 640 REYGVERARQFLDQVTKLTIWVITHKGFTTGIDDEDLPEEARDRIREIIREAEERVNKLI 699

Query: 600 KEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGS 659
           + Y  G+L+  PG     TLE++I  +L   R++AG      L   N  +IM++ G++G 
Sbjct: 700 EAYKRGELEPLPGKSLEDTLESLIMAVLAEARDNAGAVAEKYLGMDNHTVIMAKTGARGK 759

Query: 660 PINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFF 719
            +NI+QM A +GQQS+ G+R   GF  R L HF        AKGFV NS+ SGL+  E+F
Sbjct: 760 ILNITQMAALLGQQSIRGKRLYRGFRGRVLSHFKPGDLGARAKGFVVNSYKSGLTPQEYF 819

Query: 720 FHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           FH MGGREGLVDTAV+TA +GYM RRLI AL+DL ++YD +VR+  G IVQF YG+DG+D
Sbjct: 820 FHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVEYDGTVRSPEGIIVQFKYGEDGVD 879

Query: 780 PANMEGKSGEPLNFDRLLMK 799
           P  M+   G+ ++ DR++++
Sbjct: 880 P--MKSWRGKTVDVDRIIVR 897


>gi|240103982|ref|YP_002960291.1| DNA-directed RNA polymerase subunit A' [Thermococcus gammatolerans
           EJ3]
 gi|239911536|gb|ACS34427.1| DNA-directed RNA polymerase subunit A' (rpoA1) [Thermococcus
           gammatolerans EJ3]
          Length = 905

 Score =  580 bits (1494), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 329/808 (40%), Positives = 470/808 (58%), Gaps = 60/808 (7%)

Query: 11  KTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAIT 70
           K  L+K I KK    A + + CP CG     +K          +R  +   L+       
Sbjct: 130 KDRLIKEIHKK----AKERMVCPHCGAPQFPIK---------FERPTIYYELRRDEEG-- 174

Query: 71  HTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAI 127
                    N   + + P  +    +R+ D D  +L L     RPE +I+T + VPP+ +
Sbjct: 175 ---------NEYKHRMMPSEIRDRLERIPDKDLPLLGLHPEKSRPEWMILTVLPVPPVTM 225

Query: 128 RPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINS 187
           RPS+ ++     E+D+T +L  II+ N  L+  +            W+ LQ  V  YIN+
Sbjct: 226 RPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINN 285

Query: 188 DVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAI 246
           +  G+P +  +  RPL    QRLKGK+GRFRGNLSGKRV ++ RTVISPDP + I EV +
Sbjct: 286 ETSGIPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGV 345

Query: 247 PIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVE 306
           P+ +A  LT PE+V++ N EKL+Q + NGP+KYPGA  +  P+G    L       +A  
Sbjct: 346 PLAIAMELTVPEKVTEFNFEKLKQRVLNGPEKYPGANYVIDPEGRRIRLMENNLETIAER 405

Query: 307 LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 366
           L  G  V+RHLEDGD+VLFNRQPSLHRMSIM HR R+MP++T R N  VC PYNADFDGD
Sbjct: 406 LDIGWTVERHLEDGDIVLFNRQPSLHRMSIMAHRVRVMPYKTFRLNLPVCPPYNADFDGD 465

Query: 367 EMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 426
           EMN+HVPQTEEA+ EA +LM VQN++ +P+ G  L+A  QD ++  +L+TR+  ++ R+ 
Sbjct: 466 EMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFTRSE 525

Query: 427 FSLMCCYMGDGMDRVDLPTP-AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS 485
              M  + G  +D  +LP P  +   VELW+GK +FS+L+ P        +LT+    Y 
Sbjct: 526 VEQMLTFAGVDVD--ELPKPDKVENGVELWSGKTIFSLLL-PD-------DLTL---WYR 572

Query: 486 NKLI----RTEGDEEIRIETMCPN---------DGFVYFRNSELISGQLGKATLGNGNKD 532
           NKL     R E  E++  E + P+         DGFVY +N +L+SG + K     G +D
Sbjct: 573 NKLCDEPERCEAIEKLIEEKLVPDPEEVRKIAYDGFVYIQNGKLLSGAIDKKAY--GRED 630

Query: 533 G-LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISEN 591
           G L  +++R+YG       ++++ KL+   I + GF+  IDD    +E  D+  ++I E 
Sbjct: 631 GKLLDIIVREYGVERARQFLDQVTKLTIWVITHKGFTTAIDDEDLPQEALDRIKEIIREA 690

Query: 592 YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIM 651
            E  N  I+ Y  G+L+  PG    +TLE+ I  +L   R++AGK     L   N  +IM
Sbjct: 691 EERVNKLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGKVAERYLGMNNHAVIM 750

Query: 652 SQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYS 711
           ++ G++G  +NI+QM A +GQQS+ G+R   G+  R L HF        A+GFV NS+ S
Sbjct: 751 AKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRGRVLTHFKPGDLGARARGFVVNSYKS 810

Query: 712 GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQF 771
           GL+  E+FFH MGGREGLVDTAV+TA +GYM RRLI AL+DL + YD +VR+  G IVQF
Sbjct: 811 GLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQF 870

Query: 772 LYGDDGMDPANMEGKSGEPLNFDRLLMK 799
            YG+DG+DP  M    G  L+ +R++++
Sbjct: 871 RYGEDGVDP--MRSWQGRTLDVERIIVR 896


>gi|14520831|ref|NP_126306.1| DNA-directed RNA polymerase subunit A' [Pyrococcus abyssi GE5]
 gi|5458047|emb|CAB49537.1| rpoA1 DNA-directed RNA polymerase, subunit A' [Pyrococcus abyssi
           GE5]
 gi|380741373|tpe|CCE70007.1| TPA: DNA-directed RNA polymerase subunit alpha [Pyrococcus abyssi
           GE5]
          Length = 907

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 331/821 (40%), Positives = 476/821 (57%), Gaps = 67/821 (8%)

Query: 7   EALRKTDLMKS-------IVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVT 59
           E ++K +L K+       I+K+    A + + CP CG     +K          ++  + 
Sbjct: 115 EYMKKLELAKNRRSEVNKILKEIHKKARERMVCPHCGAPQYPIK---------FEKPTIY 165

Query: 60  ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLI 116
             L++               N   + + P  +    +++ D D  +L L     RPE ++
Sbjct: 166 WELRKDEQG-----------NEYKHRMMPTEIRDRLEKIPDKDLPLLGLHPEKSRPEWMV 214

Query: 117 ITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWET 176
           +T + VPP+  RPS+ ++     E+D+T +L  II+ N  L+Q +            W+ 
Sbjct: 215 LTVLPVPPVTARPSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDL 274

Query: 177 LQVEVAQYINSDVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISP 235
           LQ  V  YIN++  GVP +  +  RPL    QRLKGK+GRFRGNLSGKRV ++ RTVISP
Sbjct: 275 LQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISP 334

Query: 236 DPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL 295
           DP + I EV +PI++A  LT PE+V++ NIEKLR+ + NGPDKYPGA  +  P+G    +
Sbjct: 335 DPMISINEVGVPIQIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPGANYVIDPEGRRIRI 394

Query: 296 YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESV 355
               R  LA  +  G  V+RHL DGD+VLFNRQPSLHRMSIM HR R+MP+RT R N +V
Sbjct: 395 MESNRENLARMIDIGWTVERHLLDGDIVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLAV 454

Query: 356 CNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLI 415
           C PYNADFDGDEMN+HVPQTEEA+ EA +LM VQN++ +P+ G  ++   QD ++  +L+
Sbjct: 455 CPPYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHIISPRYGGPIIGGIQDHISGGYLL 514

Query: 416 TRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAIL---KPVELWTGKQLFSVLIRPHANMR 472
           TR+  ++ R     M  +   G+D  +LP P      KP  LW+GK +FS+L+       
Sbjct: 515 TREGAYFTREEVEQMLMFA--GVDIKELPEPDKYENGKP--LWSGKTIFSLLLPD----- 565

Query: 473 VYVNLTVKEKTYSNKLI----RTEGDEEIRIETMCPN---------DGFVYFRNSELISG 519
              +LTV    Y NKL     R E  E++  E + P+         DGFVY +N +L+SG
Sbjct: 566 ---DLTV---WYRNKLCDEPERCEALEKLIEEKLMPDPEEVRKLAYDGFVYIQNGKLLSG 619

Query: 520 QLGKATLGNGNKDG-LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKK 578
            + K     G +DG +  +++R+YG       ++++ KL+   I + GF+ GIDD    +
Sbjct: 620 AIDKKAY--GREDGIILDLIVREYGVERARQFLDQVTKLTIWVITHKGFTTGIDDEDLPE 677

Query: 579 ELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKAC 638
           E  D+  ++I E  E     I+ Y  G+L+  PG    +TLE+ I  +L   R++AG   
Sbjct: 678 EARDRIKEIIREAEERVQKLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGSIA 737

Query: 639 MGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKE 698
              L   N  +IM++ G++G  +NI+QM A +GQQS+ G+R   GF  R L HF      
Sbjct: 738 EKYLGMDNHTVIMAKTGARGKILNITQMAALLGQQSIRGKRLYRGFRGRVLSHFKPGDLG 797

Query: 699 PAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYD 758
             AKGFV NS+ SGLS  E+FFH MGGREGLVDTAV+TA +GYM RRLI AL+DL + YD
Sbjct: 798 ARAKGFVVNSYKSGLSPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYD 857

Query: 759 NSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 799
            +VR+  G IVQF YG+DG+DP  M+   G+ ++ DR++M+
Sbjct: 858 GTVRDPTGVIVQFRYGEDGVDP--MKSWGGKTVDVDRVIMR 896


>gi|240274343|gb|EER37860.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
           capsulatus H143]
          Length = 1333

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 298/676 (44%), Positives = 440/676 (65%), Gaps = 36/676 (5%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-VAVLGIIHDRSKV- 58
           +R P ++ LR+  + K I ++C     K   C +C  +NG+VKKA  + L I H++ +  
Sbjct: 105 LRRPGIDNLRRMQIAKKINERCR----KTRTCYKCNAVNGVVKKAGTSALKITHEKFRAF 160

Query: 59  --TESLQE--------FASAITHTKESKAAVNV----ATYILNPVNVLFLFKRMTDTDCE 104
             + S+++        F  +    K+S   ++     A   L+P+ VL LF+ +++ DCE
Sbjct: 161 NASTSVKKIPPPSKVVFDKSFEEAKKSNPDIDKHFKKAHDDLHPLRVLRLFRSVSNEDCE 220

Query: 105 VLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
           +L L+    RPE  +   +  PP+ IRPSV  + + S E+D+T +L  IIQ+N +L+  L
Sbjct: 221 LLSLNPEEARPEVFLWQYVPAPPVCIRPSVGQEAA-STEDDLTAKLGDIIQSNINLKNAL 279

Query: 162 VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 221
           ++       +  W+ +Q+++A YINSDV G+       +P+ GF QRLKGKQGRFRGNLS
Sbjct: 280 IKGAPVQTIIECWDYMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLS 338

Query: 222 GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPG 281
           GKRV+++GRTVISPDPNL++ EVA+P  +A  +TYPE+V+ +N EKLRQ I+NG   +PG
Sbjct: 339 GKRVDFSGRTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 398

Query: 282 ARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 339
           A  +  +  +    + +G   N +A EL+ G IV+RH+EDGD+VLFNRQPSLH++SI+ H
Sbjct: 399 ANYVLKKSQNFKMNLKFGN-PNLVANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSH 457

Query: 340 RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
            A++ P RT R NE VCNPYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TPKNGE
Sbjct: 458 FAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 517

Query: 400 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 459
            ++++ QDF+T+++L++ KD FYDR  F+ +C YM +     DLP P++LKP  LWTGKQ
Sbjct: 518 PIISAIQDFITAAYLLSSKDVFYDRKTFTHICLYMLESDTLFDLPPPSVLKPQILWTGKQ 577

Query: 460 LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 519
           +F+VL+RP+    V +NL    + +       +G        +  NDG++  RNSE++ G
Sbjct: 578 VFNVLMRPNKQSPVLINLDAACREFKA----PKGTP----RDLDANDGWLCIRNSEIMCG 629

Query: 520 QLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKE 579
            + K+T+G+G KD ++ V+LRD+G    S  MNRL++LSARW+ N GFSIGI DV P ++
Sbjct: 630 VMDKSTIGSGKKDSVFYVMLRDFGPDVASEGMNRLSRLSARWLTNLGFSIGITDVYPGEK 689

Query: 580 LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACM 639
           L ++K  ++   Y  C+  I+ +  GKL+  PGCD   T+E  I+ +L+++R+ AG+ C+
Sbjct: 690 LLEEKHHIVEHAYAQCDEVIQLFKNGKLEKAPGCDEQMTMENAISGLLSKVRQQAGEICI 749

Query: 640 GSLPWRNSPLIMSQCG 655
             L   NSPLIM+  G
Sbjct: 750 AELSRWNSPLIMATSG 765



 Score =  362 bits (930), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 224/533 (42%), Positives = 305/533 (57%), Gaps = 51/533 (9%)

Query: 746  LIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCP 805
            L+K+LEDLS +YD++VRN+   IVQF YGDD +DP +MEG++ +P++FDR     + T  
Sbjct: 766  LMKSLEDLSTRYDDTVRNSSSNIVQFQYGDDKLDPVDMEGRA-KPVHFDRTFTHAEVTTF 824

Query: 806  PAGQRYLSPQQV-----------------SEIVEKQLAAYGKESCSEAFLNSLRKFFEGQ 848
                + L P ++                  +++ K+L    +       L S R F +  
Sbjct: 825  DNSDKGLLPDEIITLCQNLLAPERAKLARFDLLGKKLEYNDRSDHGIDQLESARDFLQSI 884

Query: 849  QDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAI 908
            +D +  K + +  I    K Q  + V H T+ ++ + L  FI  C ++Y+  +VE G A+
Sbjct: 885  EDYVCAKAEKLRSIDSGTK-QRGKGVIH-TAKVSTRALTSFITACLTKYKRAQVEPGHAV 942

Query: 909  GAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECND 968
            GA+GAQSIGEPGTQMTLKTFHFAGVA M+ITQGVPRIKEIIN +K ISTP+IT EL    
Sbjct: 943  GAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVITCELVNKQ 1002

Query: 969  NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCI--------- 1019
            +  AA++VKGR+EKT +  +   I+   T   A I I +D  TIQ+  L +         
Sbjct: 1003 DLRAAQIVKGRVEKTFVRDIIYYIEEDWTGNEAYINIKIDFSTIQNLQLELTLQDILMAI 1062

Query: 1020 -------NADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLP 1072
                   +AD+   S      I + QQ  +    +  E     D    +  L  LK ++P
Sbjct: 1063 KKHKRFKSADLKFRSFGSHIHIFVDQQTTRTALSKTEEAATGADP---YIRLKHLKRLIP 1119

Query: 1073 MVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSN 1132
             + V G     R +I   E                LLVEG GL+  M  +GI+G  T++N
Sbjct: 1120 NIQVIGHPQCARAIIRTDETNTTNT----------LLVEGYGLRDCMTTDGINGHHTRTN 1169

Query: 1133 HIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQ 1192
            +I E +  LGIEAAR  I++EI E MK   M+ID RHM LLAD+MT++GEVLGITRFG+ 
Sbjct: 1170 NIMETRAVLGIEAARTTIVEEIGEVMK--DMAIDPRHMQLLADVMTYKGEVLGITRFGLA 1227

Query: 1193 KMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            KM  SVL LASFEKTADHLF+A   GR D IEGVSECII+G  + LGTG +++
Sbjct: 1228 KMRDSVLQLASFEKTADHLFDAGGAGRTDLIEGVSECIIVGKSVSLGTGAMEV 1280


>gi|389852852|ref|YP_006355086.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. ST04]
 gi|388250158|gb|AFK23011.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. ST04]
          Length = 907

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 330/821 (40%), Positives = 476/821 (57%), Gaps = 67/821 (8%)

Query: 7   EALRKTDLMKS-------IVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVT 59
           E ++K +L K+       I+K+    A + + CP CG     +K          ++  + 
Sbjct: 115 EYMKKLELAKNRRSEVNKILKEIHKKARERMVCPHCGAPQYPIK---------FEKPTIY 165

Query: 60  ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLI 116
             L++               N   + + P  V    +++ D D  +L L     RPE ++
Sbjct: 166 WELRKDEQG-----------NEYKHRMMPTEVRDRLEKIPDEDLPLLGLHPEKSRPEWMV 214

Query: 117 ITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWET 176
           +T + VPP+ +RPS+ ++     E+D+T +L  II+ N  L+Q +            W+ 
Sbjct: 215 LTVLPVPPVTVRPSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDL 274

Query: 177 LQVEVAQYINSDVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISP 235
           LQ  V  YIN++  G+P +  +  RPL    QRLKGK+GRFRGNLSGKRV ++ RTVISP
Sbjct: 275 LQYHVTTYINNETSGIPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISP 334

Query: 236 DPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL 295
           DP + I EV +PI +A  LT PE+V++ NIEKLR+ + NGPDKYPGA  +  PDG    +
Sbjct: 335 DPMISINEVGVPIEIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPGANYVIDPDGKRIRI 394

Query: 296 YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESV 355
               R  LA  L  G  V+RHL DGD+VLFNRQPSLHRMSIM HR R+MP++T R N +V
Sbjct: 395 MESNREFLAERLDIGWTVERHLLDGDIVLFNRQPSLHRMSIMAHRVRVMPYKTFRLNLAV 454

Query: 356 CNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLI 415
           C PYNADFDGDEMN+HVPQTEEA+ EA +LM VQN++ +P+ G  ++   QD ++  +L+
Sbjct: 455 CPPYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHIISPRYGGPIIGGIQDHISGGYLL 514

Query: 416 TRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAIL---KPVELWTGKQLFSVLIRPHANMR 472
           TR+  ++ R     M  +   G+D  +LP P      KP  LW+GK +FS+L+       
Sbjct: 515 TREGAYFTREEVEQMLMFA--GVDIKELPEPDKYENGKP--LWSGKTIFSLLLPD----- 565

Query: 473 VYVNLTVKEKTYSNKLI----RTEGDEEIRIETMCPN---------DGFVYFRNSELISG 519
              +LTV    Y NKL     R E  E++  E + P+         DGFVY +N +L+SG
Sbjct: 566 ---DLTV---WYRNKLCDEPERCEALEKLIEEKLIPDPEEVRKLAYDGFVYIQNGKLLSG 619

Query: 520 QLGKATLGNGNKDG-LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKK 578
            + K     G +DG +  +++R+YG       ++++ KL+   I + GF+ GIDD    +
Sbjct: 620 AIDKKAY--GREDGIILDLIVREYGIERARQFLDQVTKLTIWVITHKGFTTGIDDEDLPE 677

Query: 579 ELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKAC 638
           E  D+  ++I E  E     I+ Y  G+L+  PG    +TLE+ I  +L   R++AG   
Sbjct: 678 EARDRIREVIREAEERVQRLIEAYKRGELEPLPGKSLEETLESKIMAVLAEARDNAGAIA 737

Query: 639 MGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKE 698
              L   N  +IM++ G++G  +NI+QM A +GQQS+ G+R   GF  R L HF      
Sbjct: 738 EKYLGMDNHTVIMAKTGARGKILNITQMAALLGQQSIRGKRLYRGFKGRVLSHFKPGDLG 797

Query: 699 PAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYD 758
             A+GFV NS+ SGLS  E+FFH MGGREGLVDTAV+TA +GYM RRLI AL+DL + YD
Sbjct: 798 ARARGFVVNSYKSGLSPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYD 857

Query: 759 NSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 799
            +VR+  G IVQF YG+DG+DP  M+   G+ ++ DR++++
Sbjct: 858 GTVRDPTGVIVQFRYGEDGVDP--MKSWGGKTVDVDRVILR 896


>gi|14591328|ref|NP_143406.1| DNA-directed RNA polymerase subunit A' [Pyrococcus horikoshii OT3]
 gi|3257973|dbj|BAA30656.1| 907aa long hypothetical DNA-directed RNA polymerase subunit A'
           [Pyrococcus horikoshii OT3]
          Length = 907

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 328/821 (39%), Positives = 477/821 (58%), Gaps = 67/821 (8%)

Query: 7   EALRKTDLMKS-------IVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVT 59
           E ++K +L K+       I+K+    A + + CP CG     +K          ++  + 
Sbjct: 115 EYMKKLELAKNRRSEVNKILKEIHKKARERMVCPHCGAPQYPIK---------FEKPTIY 165

Query: 60  ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLI 116
             L++               N   + + P  +    +++ D D  +L L     RPE ++
Sbjct: 166 WELRKDEQG-----------NEYKHRMMPTEIRDRLEKIPDKDLPLLGLHPEKSRPEWMV 214

Query: 117 ITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWET 176
           +T + VPP+ +RPS+ ++     E+D+T +L  II+ N  L+Q +            W+ 
Sbjct: 215 LTVLPVPPVTVRPSITLETGIRAEDDLTHKLVDIIRINNRLRQNIEAGAPQLIIEDLWDL 274

Query: 177 LQVEVAQYINSDVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISP 235
           LQ  V  YIN++  GVP +  +  RPL    QRLKGK+GRFRGNLSGKRV ++ RTVISP
Sbjct: 275 LQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISP 334

Query: 236 DPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL 295
           DP + I EV +PI++A  LT PE+V++ NIEKLR+ + NGPDKYPGA  +  P+G    +
Sbjct: 335 DPMISINEVGVPIQIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPGANYVIDPEGRRIRI 394

Query: 296 YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESV 355
               +  LA  +  G  V+RHL DGD+VLFNRQPSLHRMSIM HR R+MP++T R N +V
Sbjct: 395 MESNKENLAKMIDIGWTVERHLVDGDIVLFNRQPSLHRMSIMAHRVRVMPYKTFRLNLAV 454

Query: 356 CNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLI 415
           C PYNADFDGDEMN+HVPQTEEA+ EA +LM VQN++ +P+ G  ++   QD ++  +L+
Sbjct: 455 CPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPIIGGIQDHISGGYLL 514

Query: 416 TRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAIL---KPVELWTGKQLFSVLIRPHANMR 472
           TR+  ++ R     M  +   G+D  +LP P      KP  LW+GK +FS+L+       
Sbjct: 515 TREGAYFTREEVEQMLMFA--GVDIKELPEPDKYENGKP--LWSGKTIFSLLLPD----- 565

Query: 473 VYVNLTVKEKTYSNKLI----RTEGDEEIRIETMCPN---------DGFVYFRNSELISG 519
              +LTV    Y NKL     + E  E++  E + P+         DGFVY +N +L+SG
Sbjct: 566 ---DLTV---WYRNKLCDEEEKCEALEKLIEEKLIPDPEEVRKLAYDGFVYIQNGKLLSG 619

Query: 520 QLGKATLGNGNKDG-LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKK 578
            + K     G +DG +  +++R+YG       ++++ KL+   I + GF+ GIDD    +
Sbjct: 620 AIDKKAY--GREDGIILDLIVREYGVERARQFLDQVTKLTIWVITHKGFTTGIDDEDLPE 677

Query: 579 ELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKAC 638
           E  D+  ++I E  E     I+ Y  G+L+  PG    +TLE+ I  +L   R++AG   
Sbjct: 678 EARDRIREIIREAEERVQRLIEAYKRGELEPLPGKSLEETLESKIMAVLAEARDNAGSVA 737

Query: 639 MGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKE 698
              L   N  +IM++ G++G  +NI+QM A +GQQS+ GRR   GF  R L HF      
Sbjct: 738 EKYLGMNNHAVIMAKTGARGKILNITQMAALLGQQSIRGRRLYRGFKGRVLSHFKPGDLG 797

Query: 699 PAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYD 758
             AKGFV NS+ SGLS  E+FFH MGGREGLVDTAV+TA +GYM RRLI AL+DL + YD
Sbjct: 798 ARAKGFVVNSYKSGLSPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYD 857

Query: 759 NSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 799
            +VR+  G IVQF YG+DG+DP  M+   G+ ++ DR++++
Sbjct: 858 GTVRDPTGVIVQFRYGEDGVDP--MKSWGGKTVDVDRVIVR 896


>gi|223478217|ref|YP_002582841.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. AM4]
 gi|214033443|gb|EEB74270.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. AM4]
          Length = 905

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 330/808 (40%), Positives = 469/808 (58%), Gaps = 60/808 (7%)

Query: 11  KTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAIT 70
           K  L+K I KK    A + + CP CG     +K          +R  +   L+       
Sbjct: 130 KDRLIKEIHKK----AKERMVCPHCGAPQFPIK---------FERPTIYYELRRDEEG-- 174

Query: 71  HTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAI 127
                    N   + + P  +    +R+ D D  +L L     RPE +I+T + VPP+ +
Sbjct: 175 ---------NEYKHRMMPSEIRDRLERIPDKDLPLLGLHPEKSRPEWMILTVLPVPPVTM 225

Query: 128 RPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINS 187
           RPS+ ++     E+D+T +L  II+ N  L+  +            W+ LQ  V  YIN+
Sbjct: 226 RPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINN 285

Query: 188 DVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAI 246
           +  GVP +  +  RPL    QRLKGK+GRFRGNLSGKRV ++ RTVISPDP + I EV +
Sbjct: 286 ETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGV 345

Query: 247 PIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVE 306
           P+ +A  LT PE+V++ N EKLRQ + NGP+KYPGA  +  P+G    L       +A  
Sbjct: 346 PLAIAMELTVPEKVTEFNFEKLRQRVLNGPEKYPGANYVIDPEGRRIRLMENNLEIIAER 405

Query: 307 LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 366
           L  G  V+RHLEDGD+VLFNRQPSLHRMSIM HR R+MP++T R N  VC PYNADFDGD
Sbjct: 406 LDIGWTVERHLEDGDIVLFNRQPSLHRMSIMAHRVRVMPYKTFRLNLPVCPPYNADFDGD 465

Query: 367 EMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 426
           EMN+HVPQTEEA+ EA +LM VQN++ +P+ G  L+A  QD ++  +L+TR+  ++ R+ 
Sbjct: 466 EMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFTRSE 525

Query: 427 FSLMCCYMGDGMDRVDLPTP-AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS 485
              M  + G  +D  +LP P  +   VELW+GK +FS+L+ P        +LT+    Y 
Sbjct: 526 VEQMLTFAGVDVD--ELPEPDKVENGVELWSGKTIFSLLL-PD-------DLTI---WYR 572

Query: 486 NKLI----RTEGDEEIRIETMCPN---------DGFVYFRNSELISGQLGKATLGNGNKD 532
           NKL     R E  E++  E + P+         DGFVY +N +L+SG + K     G +D
Sbjct: 573 NKLCDEPERCEALEKLIEEKLVPDPEEVRKLAYDGFVYIQNGKLLSGAIDKKAY--GRED 630

Query: 533 G-LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISEN 591
           G L  +++R+YG       ++++ KL+   I + GF+  IDD    +E  D+  ++I E 
Sbjct: 631 GKLLDLIVREYGVERARQFLDQVTKLTIWVITHKGFTTAIDDEDLPQEALDRIKEIIREA 690

Query: 592 YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIM 651
            E     I+ Y  G+L+  PG    +TLE+ I  +L   R++AGK     L   N  +IM
Sbjct: 691 EERVQRLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGKVAERYLGMNNHAVIM 750

Query: 652 SQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYS 711
           ++ G++G  +NI+QM A +GQQS+ G+R   G+  R L HF        A+GFV NS+ S
Sbjct: 751 AKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRGRVLTHFKPGDLGARARGFVVNSYKS 810

Query: 712 GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQF 771
           GL+  E+FFH MGGREGLVDTAV+TA +GYM RRLI AL+DL + YD +VR+  G IVQF
Sbjct: 811 GLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQF 870

Query: 772 LYGDDGMDPANMEGKSGEPLNFDRLLMK 799
            YG+DG+DP  M    G  ++ DR++++
Sbjct: 871 RYGEDGVDP--MRSWQGRTIDVDRIIVR 896


>gi|57641017|ref|YP_183495.1| DNA-directed RNA polymerase subunit A' [Thermococcus kodakarensis
           KOD1]
 gi|57159341|dbj|BAD85271.1| DNA-directed RNA polymerase, subunit A' [Thermococcus kodakarensis
           KOD1]
          Length = 906

 Score =  577 bits (1487), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 325/802 (40%), Positives = 467/802 (58%), Gaps = 56/802 (6%)

Query: 18  IVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKA 77
           ++K+    A + + CP CG              I  +R  +   L++             
Sbjct: 133 LIKEIHKKAKERMVCPHCG---------APQFPIKFERPTIYWELRKDEEG--------- 174

Query: 78  AVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMD 134
             N   + + P  V    +++ D D  +L L     RPE +++T + VPP+ +RPS+ ++
Sbjct: 175 --NEYKHRMMPSEVRDRLEKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTMRPSITLE 232

Query: 135 GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPF 194
                E+D+T +L  II+ N  L+  +            W+ LQ  V  YIN++  GVP 
Sbjct: 233 SGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPP 292

Query: 195 S-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           +  +  RPL    QRLKGK+GRFRGNLSGKRV ++ RTVISPDP + I EV +P+ +A  
Sbjct: 293 AKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPLAVAME 352

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIV 313
           LT PE+V++ N EKL+Q + NGP+KYPGA  +  P+G    L    R  +A +L  G  V
Sbjct: 353 LTVPEKVTEFNYEKLKQRVLNGPEKYPGANYVIDPEGRRIRLMESNRELIAEKLDIGWTV 412

Query: 314 DRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVP 373
           +RHLEDGDVVLFNRQPSLHRMSIM HR R+MP+RT R N  VC PYNADFDGDEMN+HVP
Sbjct: 413 ERHLEDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLPVCPPYNADFDGDEMNLHVP 472

Query: 374 QTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCY 433
           QTEEA+ EA +LM VQN++ +P+ G  L+A  QD ++  +L+TR+  ++ R     M  +
Sbjct: 473 QTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFTRYEVEQMLMF 532

Query: 434 MGDGMDRVDLPTPAILKPVE-LWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI--- 489
              GMD  +LP P   +  E LW+GK +FS+L+          +LT+    Y NKL    
Sbjct: 533 A--GMDVNELPEPDKYENGEPLWSGKTIFSLLLPD--------DLTI---WYRNKLCDEP 579

Query: 490 -RTEGDEEIRIETMCPN---------DGFVYFRNSELISGQLGKATLGNGNKDG-LYSVL 538
            R E  E++  E + P+         DGFVY +N +L+SG + K     G +DG L  ++
Sbjct: 580 ERCEALEKLIEEKLIPDPEEVRKLAYDGFVYIQNGKLLSGAVDKKAY--GREDGKLLDII 637

Query: 539 LRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVK 598
           +R+YG       ++++ KL+   I + GF+  IDD    +E  D+  ++I E  E     
Sbjct: 638 VREYGVERARQFLDQVTKLTIWVITHKGFTTAIDDEDLPQEAIDRIHEIIREAEEKVQRL 697

Query: 599 IKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKG 658
           I+ Y  G+L+  PG    +TLE+ I  +L   R++AGK     L   N  +IM++ G++G
Sbjct: 698 IEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGKVAERYLGMNNHAVIMAKTGARG 757

Query: 659 SPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEF 718
             +NI+QM A +GQQS+ G+R   G+  R L HF        A+GFV NS+ SGL+  E+
Sbjct: 758 KILNITQMAAMLGQQSIRGKRLYRGYRGRVLTHFKPGDLGARARGFVTNSYKSGLTPQEY 817

Query: 719 FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
           FFH MGGREGLVDTAV+TA +GYM RRLI AL+DL + YD +VR+  G IVQF YG+DG+
Sbjct: 818 FFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQFKYGEDGV 877

Query: 779 DPANMEGKSGEPLNFDRLLMKV 800
           DP  M+   G+ ++ DR++++ 
Sbjct: 878 DP--MKSWQGKTVDVDRVIVRT 897


>gi|302141712|emb|CBI18915.3| unnamed protein product [Vitis vinifera]
          Length = 1565

 Score =  576 bits (1484), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 360/934 (38%), Positives = 515/934 (55%), Gaps = 108/934 (11%)

Query: 91   VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNE------- 140
            VL + KR++D DC +L L+    RP+ +I+  + +PP  +RPSV+MD S  +E       
Sbjct: 247  VLNVLKRISDEDCILLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEASLSVLV 306

Query: 141  -----------NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDV 189
                       +D+T +L  II+ N +L+++      A       + LQ  VA Y ++++
Sbjct: 307  NDRLKLSMWLWDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHVATYFDNEL 366

Query: 190  RGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPI 248
             G P + Q   RP+     RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P 
Sbjct: 367  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPW 426

Query: 249  RMARILTYPERVSDHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLA 304
             +A  LTYPE V+ +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   
Sbjct: 427  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHH 486

Query: 305  VELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFD 364
            +EL  G  V+RHL DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFD
Sbjct: 487  LEL--GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 544

Query: 365  GDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDR 424
            GDEMNMHVPQ+ E R E L LM V   + +P++   ++   QD L     IT++DTF ++
Sbjct: 545  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 604

Query: 425  AAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTY 484
              F  +  +  D   ++  P PAILKP  LWTGKQ+F+++I    N+      T    + 
Sbjct: 605  DVFMNILMWWEDFDGKI--PAPAILKPRPLWTGKQVFNLIIPKQINLL----RTSAWHSE 658

Query: 485  SNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA 544
            S     T GD ++RIE              EL++G L K TLG      L  V+  + G 
Sbjct: 659  SETGFITPGDTQVRIE------------KGELLAGTLCKKTLGTST-GSLIHVIWEEVGP 705

Query: 545  HATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNE 604
             A    +     L   W+  +GFSIGI D        +K  + IS+        I+   E
Sbjct: 706  DAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQE 765

Query: 605  GKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINIS 664
             +L+ +PG    ++ E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INIS
Sbjct: 766  RQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 825

Query: 665  QMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMG 724
            QM ACVGQQ+V G+R P GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MG
Sbjct: 826  QMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 885

Query: 725  GREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
            GREGL+DTAVKT++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E
Sbjct: 886  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 945

Query: 785  GKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKF 844
             +       D L MK                                             
Sbjct: 946  TQ-----KLDSLKMK--------------------------------------------- 955

Query: 845  FEGQQDKLDKKIKF-VEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVE 903
                + + D+  K+ ++D  W + S +L E  H+     +K  +  ++   SR+    V 
Sbjct: 956  ----KGEFDRVFKYEIDDENW-NPSYMLPE--HRLIWNAQKTFKERLK-IESRFLQSLVA 1007

Query: 904  AGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAE 963
             G  IG + AQSIGEP TQMTL TFH+AGV++ N+T GVPR++EIIN AK+I TP ++  
Sbjct: 1008 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 1067

Query: 964  L--ECNDNENAARVVKGRIEKTLLGQVAKSIKIV 995
            L  + +  +  A+ V+  +E T L  V ++ + +
Sbjct: 1068 LKPDVSKTKERAKNVQCALEYTTLRSVTQATEKI 1101



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 86/140 (61%)

Query: 1102 EKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAH 1161
            EK ++ L  EG  L AVM  E +D  +T SNH+ EV + LGIEA R  ++DE+   +   
Sbjct: 1131 EKVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1190

Query: 1162 GMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD 1221
            G  ++ RH+ +L D MT+RG ++ ITR GI + D   +M  SFE+T D L +A+V    D
Sbjct: 1191 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1250

Query: 1222 RIEGVSECIIMGIPMPLGTG 1241
             + GV+E I++G   P+GTG
Sbjct: 1251 FLRGVTENIMLGQLAPIGTG 1270


>gi|332157774|ref|YP_004423053.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. NA2]
 gi|331033237|gb|AEC51049.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. NA2]
          Length = 906

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 328/822 (39%), Positives = 474/822 (57%), Gaps = 68/822 (8%)

Query: 7   EALRKTDLMKS-------IVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVT 59
           E ++K +L K+       I+K+    A + + CP CG     +K          ++  + 
Sbjct: 115 EYMKKLELAKNRRSEVNKILKEIHKKARERMVCPHCGAPQYPIK---------FEKPTIY 165

Query: 60  ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLI 116
             L++               N   + + P  +    +++ D D  +L L     RPE ++
Sbjct: 166 WELRKDEQG-----------NEYKHRMMPTEIRDRLEKIPDKDLPLLGLHPEKSRPEWMV 214

Query: 117 ITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWET 176
           +T + VPP+  RPS+ ++     E+D+T +L  II+ N  L+Q +            W+ 
Sbjct: 215 LTVLPVPPVTARPSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDL 274

Query: 177 LQVEVAQYINSDVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISP 235
           LQ  V  YIN++  GVP +  +  RPL    QRLKGK+GRFRGNLSGKRV ++ RTVISP
Sbjct: 275 LQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISP 334

Query: 236 DPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL 295
           DP + I EV +PI +A  LT PE+V++ NIEKLR+ I NGPDKYPGA  +  P+G    +
Sbjct: 335 DPMISINEVGVPIEIAMELTVPEKVTEFNIEKLRKMILNGPDKYPGANYVIDPEGRRIRI 394

Query: 296 YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESV 355
               +  LA  +  G  V+RHL DGD+VLFNRQPSLHRMSIM HR R+MP++T R N +V
Sbjct: 395 MESNKENLARMIDIGWTVERHLVDGDIVLFNRQPSLHRMSIMAHRVRVMPYKTFRLNLAV 454

Query: 356 CNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLI 415
           C PYNADFDGDEMN+HVPQTEEA+ EA +LM VQN++ +P+ G  ++   QD ++  +L+
Sbjct: 455 CPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHILSPRYGGPIIGGIQDHISGGYLL 514

Query: 416 TRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAIL----KPVELWTGKQLFSVLIRPHANM 471
           TR+  ++ R     M  +   G+D  +LP P       +P  LW+GK +FS+L+      
Sbjct: 515 TREGAYFTREEVEQMLMFA--GLDIKELPEPDKYDENGRP--LWSGKTIFSLLLPD---- 566

Query: 472 RVYVNLTVKEKTYSNKLI----RTEGDEEIRIETMCPN---------DGFVYFRNSELIS 518
               +LTV    Y NKL     R E  E +  E + P+         DGFVY +N +L+S
Sbjct: 567 ----DLTV---WYRNKLCDEPERCEALERLIEEKLMPDPEEVRKLAYDGFVYIQNGKLLS 619

Query: 519 GQLGKATLGNGNKDG-LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPK 577
           G + K     G +DG +  +++R+YG       ++++ KL+   I + GF+ GIDD    
Sbjct: 620 GAIDKKAY--GREDGIILDLIVREYGVERARQFLDQVTKLTIWVITHKGFTTGIDDEDLP 677

Query: 578 KELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKA 637
           +E  D+  ++I E  E     I+ Y  G+L+  PG    +TLE+ I  +L   R++AG  
Sbjct: 678 EEAKDRIREIIREAEERVEKLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGAV 737

Query: 638 CMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAK 697
               L   N  +IM++ G++G  +NI+QM A +GQQS+ G+R   GF  R L HF     
Sbjct: 738 AEKYLGMDNHTVIMAKTGARGKILNITQMAALLGQQSIRGKRLYRGFRGRVLSHFKPGDL 797

Query: 698 EPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQY 757
              A+GFV NS+ SGLS  E+FFH MGGREGLVDTAV+TA +GYM RRLI AL+DL + Y
Sbjct: 798 GARARGFVVNSYKSGLSPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDY 857

Query: 758 DNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 799
           D +VR+  G IVQF YG+DG+DP  M+   G+ ++ DR++M+
Sbjct: 858 DGTVRDPTGVIVQFRYGEDGVDP--MKSWGGKTVDVDRVIMR 897


>gi|341581877|ref|YP_004762369.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. 4557]
 gi|340809535|gb|AEK72692.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. 4557]
          Length = 905

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 330/809 (40%), Positives = 472/809 (58%), Gaps = 60/809 (7%)

Query: 11  KTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAIT 70
           K  L+K I KK    A + + CP CG     +K          +R  +   L++      
Sbjct: 130 KDRLIKEIHKK----AKERMVCPHCGAPQFPIK---------FERPTIYWELRKDEEG-- 174

Query: 71  HTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAI 127
                    N   + + P  V    +++ D D  +L L     RPE +I+T + VPP+ +
Sbjct: 175 ---------NEYRHRMMPSEVRDRLEKIPDKDLPLLGLHPEKARPEWMILTVLPVPPVTM 225

Query: 128 RPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINS 187
           RPS+ ++     E+D+T +L  II+ N  L+  +            W+ LQ  V  YIN+
Sbjct: 226 RPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINN 285

Query: 188 DVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAI 246
           +  G+P +  +  RPL    QRLKGK+GRFRGNLSGKRV ++ RTVISPDP + I EV +
Sbjct: 286 ETSGIPPAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGV 345

Query: 247 PIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVE 306
           P+ +A  LT PE+V++ N EKL++ + NGP+KYPGA  +  P+G    L       +A +
Sbjct: 346 PMAVAMELTVPEKVTEFNFEKLKKMVLNGPEKYPGANYVIDPEGRRIRLMENNLEIIAEK 405

Query: 307 LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 366
           L  G  V+RHL DGD+VLFNRQPSLHRMSIM HR R+MP+RT R N SVC PYNADFDGD
Sbjct: 406 LDLGWTVERHLMDGDIVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLSVCPPYNADFDGD 465

Query: 367 EMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 426
           EMN+HVPQTEEA+ EA +LM VQN++ +P+ G  L+A  QD ++  +L+TR+  ++ R+ 
Sbjct: 466 EMNLHVPQTEEAQAEARILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFTRSE 525

Query: 427 FSLMCCYMGDGMDRVDLPTP-AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS 485
              M  +   G+D  +LP P  +   VELW+GK +FS L+ P        +LT+    Y 
Sbjct: 526 VEQMLMFA--GIDIRELPEPDKVEDGVELWSGKTIFS-LVLPE-------DLTI---WYR 572

Query: 486 NKLI----RTEGDEEIRIETMCPN---------DGFVYFRNSELISGQLGKATLGNGNKD 532
           NKL     R E  E++  E + P+         DGFVY +N +L+SG + K     G +D
Sbjct: 573 NKLCDEPERCEALEKLIEEKLVPDPGEVRKLAYDGFVYIQNGKLLSGAIDKKAY--GRED 630

Query: 533 G-LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISEN 591
           G L  +++R+YG       ++++ KL+   I + GF+  IDD     E  D+  ++I E 
Sbjct: 631 GKLLDLIVREYGVDRARQFLDQVTKLAIWTITHKGFTTAIDDEDLPSEALDRIHEIIREA 690

Query: 592 YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIM 651
            E  N  I+ Y  G+L+  PG    +TLE+ I  +L   R++AGK     L   N  +IM
Sbjct: 691 EERVNRLIEAYKNGELEPLPGKTLEETLESNIMAVLAEARDNAGKVAERYLGMGNHAVIM 750

Query: 652 SQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYS 711
           ++ G++G  +NI+QM A +GQQS+ G+R   G+  R L HF        AKGFV NS+ S
Sbjct: 751 AKTGARGKMLNITQMAAMLGQQSIRGKRLYRGYRGRVLTHFKPGDLGARAKGFVTNSYKS 810

Query: 712 GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQF 771
           GL+  E+FFH MGGREGLVDTAV+TA +GYM RRLI AL+DL + YD +VR+  G IVQF
Sbjct: 811 GLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQF 870

Query: 772 LYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
            YG+DG+DP  M+   G+ ++ DR++++ 
Sbjct: 871 KYGEDGIDP--MKSWQGKTVDVDRVILRT 897


>gi|401016|sp|P31813.1|RPOA1_THECE RecName: Full=DNA-directed RNA polymerase subunit A'
 gi|48141|emb|CAA47723.1| Subunit A' of DNA-dependent RNA polymerase [Thermococcus celer]
          Length = 905

 Score =  574 bits (1479), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 328/808 (40%), Positives = 470/808 (58%), Gaps = 60/808 (7%)

Query: 11  KTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAIT 70
           K  L+K I KK    A + + CP CG     +K          +R  V   L++      
Sbjct: 130 KDRLIKEIHKK----AKERMVCPHCGSPQFPIK---------FERPTVYWELRKDEEG-- 174

Query: 71  HTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAI 127
                    N   + + P  V    +++ D D  ++ L     RPE +++T + VPP+ +
Sbjct: 175 ---------NEYKHRMMPSEVRDRLEKIPDRDLPLIGLDAEKARPEWMVLTVLPVPPVTM 225

Query: 128 RPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINS 187
           RPS+ ++     E+D+T +L  II+ N  L+  +            W+ LQ  V  YIN+
Sbjct: 226 RPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINN 285

Query: 188 DVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAI 246
           +  G+P +  +  RPL    QRLKGK+GRFRGNLSGKRV ++ RTVISPDP + I EV +
Sbjct: 286 ETSGIPPAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGV 345

Query: 247 PIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVE 306
           P+ +A  LT PE+V++ N EKLR+ + NGP+KYPGA  +  P+G    L       +A +
Sbjct: 346 PMAIAMELTVPEKVTEFNFEKLRKMVLNGPEKYPGANYVIDPEGRRIRLMENNLETVAEK 405

Query: 307 LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 366
           L  G  V+RHL DGDVVLFNRQPSLHRMSIM HR R+MP+RT R N SVC PYNADFDGD
Sbjct: 406 LDIGWTVERHLLDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLSVCPPYNADFDGD 465

Query: 367 EMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 426
           EMN+HVPQTEEA+ EA +LM VQN++ +P+ G  L+A  QD ++  +L+TR+  +++R  
Sbjct: 466 EMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFERTE 525

Query: 427 FSLMCCYMGDGMDRVDLPTP-AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS 485
              M  + G  +DR  LP P  +   VELW+GK +FS+L+          +LT+    Y 
Sbjct: 526 VEQMLMFAGVDVDR--LPEPDKVENGVELWSGKTIFSLLLPK--------DLTI---WYR 572

Query: 486 NKLI----RTEGDEEIRIETMCPN---------DGFVYFRNSELISGQLGKATLGNGNKD 532
           NKL     R E  E++  E + P+         DGF Y  N +L+SG + K     G +D
Sbjct: 573 NKLCDEPGRCEALEKLIEEKLIPDEEEVRALAYDGFTYILNGKLLSGAIDKTAY--GRED 630

Query: 533 G-LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISEN 591
           G L  +++R+YG       ++++ KL+   I + GF+  IDD     E  D+  ++I E 
Sbjct: 631 GKLLDIIVREYGVERARQFLDQVTKLAIWVITHKGFTTAIDDEDLPTEALDRIREIIREA 690

Query: 592 YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIM 651
            E  N  I+ Y  G+L+  PG    +TLE+ I   L   R++AGK     L   N  +IM
Sbjct: 691 EERVNRLIEAYRNGELEPIPGKTLEETLESKIMAALAEARDNAGKVAERYLGMSNHAVIM 750

Query: 652 SQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYS 711
           ++ G++G  +NI+QM A +GQQS+ G+R   G+ +R L HF        A+GFV NS+ S
Sbjct: 751 AKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRERVLTHFKPGDLGARARGFVINSYKS 810

Query: 712 GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQF 771
           GL+  E+FFH MGGREGLVDTAV+TA +GYM RRLI AL+DL ++YD +VR+  G IVQF
Sbjct: 811 GLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVEYDGTVRDPTGIIVQF 870

Query: 772 LYGDDGMDPANMEGKSGEPLNFDRLLMK 799
            YG+DG+DP  M    G+ ++ +R++++
Sbjct: 871 RYGEDGIDP--MRSWKGKTIDVNRVVLR 896


>gi|119719203|ref|YP_919698.1| DNA-directed RNA polymerase subunit A' [Thermofilum pendens Hrk 5]
 gi|119524323|gb|ABL77695.1| DNA-directed RNA polymerase, subunit A' [Thermofilum pendens Hrk 5]
          Length = 888

 Score =  573 bits (1478), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 302/720 (41%), Positives = 444/720 (61%), Gaps = 24/720 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P+ +     R+ + D  V+ +     RPE +++  I V P ++RPS+ ++    +E+D
Sbjct: 179 LTPLEIWERLSRIPEGDLRVVGIDPKEARPEWMVLRVIPVVPPSVRPSITLESGDRSEDD 238

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N  L++ +   + +      W  LQ  VA Y ++++ G+P +  +  RP
Sbjct: 239 LTHKLVDIIRVNQRLKENIDAGSPSLVIEDLWNLLQFHVATYFDNELPGIPPARHRSGRP 298

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+L+GKRV+++ RTVISPDPNL I EV +PI +A++LT PE+V+
Sbjct: 299 LRTLAQRLKGKEGRFRGSLAGKRVDFSSRTVISPDPNLSINEVGVPIDVAKVLTVPEKVT 358

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
             NIEKLR+ + NGPD +PGA  I  PDG+   L Y K R +++  LK G IV+RHL DG
Sbjct: 359 PWNIEKLRKLVINGPDVWPGANYIIKPDGSRIDLRYVKHREEISQTLKPGYIVERHLMDG 418

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           DVVLFNRQPSLHR+SIM H  +++P++T R N  V  PYNADFDGDEMN+HVPQ+EEAR 
Sbjct: 419 DVVLFNRQPSLHRISIMAHIVKVLPYKTFRLNLLVTIPYNADFDGDEMNLHVPQSEEARA 478

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           EA  LM VQ ++ TP+ G  ++    D+++ S+L+TRKD   D+ + +L   Y+G+  D 
Sbjct: 479 EARELMLVQEHIMTPRYGAPIIGGLHDYISGSYLLTRKDALLDKKS-ALRLLYIGNNCD- 536

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
             L  PAI+KP   WTGKQ+ S+ +    N   YV         S      + DEE    
Sbjct: 537 -PLVEPAIIKPGPYWTGKQIVSMFLPKGLN---YVGRA------SVAPASGKCDEE---- 582

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             C NDG+V  ++ +L+ G   K  +G      +   ++R++G       M+ + K+   
Sbjct: 583 -YCENDGYVLIKDGKLLLGVFDKQAIGAEKHGTVLHEIVREFGVEKAKELMDGMFKVFIA 641

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           ++  HGF++G+D V+  +E  D   +++ E  +     I++Y  G+LQ  PG    +TLE
Sbjct: 642 YLDMHGFTMGVDSVEIPREAEDDIREILQEAEKKVEDLIRQYESGELQPMPGKTRKETLE 701

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
            +I ++L   R  AG+     L   N  +IM++ G++GS +N++QM A VGQQSV G+R 
Sbjct: 702 DLIMNVLAEARTRAGEVTSKHLGLLNHAVIMAKTGARGSMLNLTQMAAVVGQQSVRGKRI 761

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
             G+  R+LPHF +    P AKGFV +SF  GLS  EFFFH + GREGLVDTAV+TA +G
Sbjct: 762 ERGYTGRALPHFVKGDLSPLAKGFVYSSFRRGLSPVEFFFHAISGREGLVDTAVRTAQSG 821

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           YM RRL  A++D  + YD +VRN+ G I+QF YG+D +DPA  +   G+P++ D+L+ KV
Sbjct: 822 YMYRRLQSAMQDFYVSYDGTVRNSEGMIIQFRYGEDSVDPARSD--HGKPVDVDKLIKKV 879


>gi|387595902|gb|EIJ93525.1| RNA polymerase 2 [Nematocida parisii ERTm1]
          Length = 1284

 Score =  573 bits (1478), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 327/779 (41%), Positives = 466/779 (59%), Gaps = 62/779 (7%)

Query: 14  LMKSIVKKCSTMASKAVKCPRCGYINGMVKKA-------VAVLGIIHDRSKVTESLQEFA 66
           L + ++KK    + K V+C  C  ING+V+K        V  L   HD  K  E     A
Sbjct: 132 LEQRVIKKVFDESKKTVECFSCNSINGIVRKTGFKFFHRVHRLKK-HDTQKEIERTLYSA 190

Query: 67  SAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIA 126
           S   + + +    N     L+P+ V  + + +T+    +L +S     L+IT + VPP  
Sbjct: 191 SVKDNPELTNWINNTPDEYLSPITVQEVLRNITEDAKSLLGVSCDVVSLMITCLPVPPGT 250

Query: 127 IRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYIN 186
           IRPSV+   S SNE+D+T +L  I  T+  ++ E+ +  S       W+ LQ + AQ I+
Sbjct: 251 IRPSVMSLDSSSNEDDLTIKLSEISYTSQLIRDEIAKGASLHALAENWDLLQSQCAQLIS 310

Query: 187 SDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAI 246
           SD R        A  +   VQRLKGK GRFRGNLSGKRVE++GRTVISPDPNL + +V I
Sbjct: 311 SDSR------PDAAKIRSLVQRLKGKHGRFRGNLSGKRVEFSGRTVISPDPNLSVEQVGI 364

Query: 247 PIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVE 306
           P  MA+ LT P  +++ N  K+    +NG   YPGA  +   D   R+   K  N   + 
Sbjct: 365 PEEMAKTLTVPIPITEGNKNKMSALSKNGCSTYPGANYLLKQD--RRIFLRKDNN---IV 419

Query: 307 LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 366
           L+ G I++RH++D DVVLFNRQPSLHR+SIM H+ +++P RTLRFNE VC+PYNADFDGD
Sbjct: 420 LEEGDILERHMQDSDVVLFNRQPSLHRLSIMAHKVKVLPGRTLRFNECVCSPYNADFDGD 479

Query: 367 EMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 426
           EMN+H+PQT EAR EAL LMGV+NNL  P+NG+ L+A+TQDF+T S+LIT+K TF+ +  
Sbjct: 480 EMNIHLPQTVEARVEALELMGVKNNLSVPRNGQPLIAATQDFITGSYLITKKSTFFTKKQ 539

Query: 427 FSLMCCY-MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS 485
           F     Y + +  +R+    P IL+P  ++TGK LFS        + + +++ ++ + Y+
Sbjct: 540 FGQFITYALPNSTERIR-AKPTILRPAVIYTGKTLFS------TALNLSISVEIRTRNYT 592

Query: 486 NKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAH 545
              + +             N+G    R+ E++ G+  K  +G   +  ++   LR+ G  
Sbjct: 593 PSTVPS-----------AQNEGVFVMRDGEILFGRADKRIVG-AEEGTIFHYELREGGPL 640

Query: 546 ATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEG 605
                ++ +A+L +R++G  GFSIG+DDV  + +L     +LI++  + C V+       
Sbjct: 641 VVVKALDAIARLCSRYLGESGFSIGLDDVFAEPDLY----QLITKAVDACEVEA------ 690

Query: 606 KLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQ 665
                    A++  ++ I+ IL+R REDAGK C+  L   NSP+IM  CGSKGS IN+SQ
Sbjct: 691 ---------ASKPADSTIS-ILSRAREDAGKHCIERLSPHNSPVIMQACGSKGSLINVSQ 740

Query: 666 MVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGG 725
           MVACVGQQ VGG+R    F DR+LPHF  +    A++GFV +SF +GL  TEFFFH + G
Sbjct: 741 MVACVGQQVVGGQRISLDFGDRTLPHF--QGDTNASRGFVRSSFCAGLLPTEFFFHAVSG 798

Query: 726 REGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           REGLVDTAVKTA+TGYM RRL+K LE + + YD +VR  G  I+Q  +GDDG+DP  ++
Sbjct: 799 REGLVDTAVKTAETGYMQRRLMKVLEGVYVAYDGTVRR-GKQIIQMQFGDDGLDPVVLQ 856



 Score =  246 bits (627), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 148/377 (39%), Positives = 212/377 (56%), Gaps = 60/377 (15%)

Query: 877  KTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 936
            KT  +T    ++FI     +    ++E GTA+GA+ AQSIGEPGTQMTLKTFH AG +  
Sbjct: 952  KTHAMTAPVKQLFISKMLFQALKSQIEYGTAVGALAAQSIGEPGTQMTLKTFHLAGTSGA 1011

Query: 937  NITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVM 996
            +IT GVPR+KEIIN +  ISTP+I    +    +   + +  R++  L+  +A+S+ I  
Sbjct: 1012 SITLGVPRLKEIINASTAISTPLI----KIIPLDGHFKYIPDRVQPILISDLAESVSINK 1067

Query: 997  TSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD 1056
            TS +  I  +L M+         N D                        ++++    V 
Sbjct: 1068 TSAVFKISSSLIMK--------YNVD------------------------KEIKSLGGVK 1095

Query: 1057 KSKIHFELYSLKNVLPMVI-------VKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLL 1109
            K   ++    L+  LP  +       VKGI +V RV+  + E                ++
Sbjct: 1096 KDDTYYWEAPLEKYLPSEVDKLLKTKVKGISSVTRVITTDTE----------------II 1139

Query: 1110 VEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRH 1169
             EGTGL  ++G EG++  +T +N+I+E  +TLGIEAAR  I+ EI  T+  HG+S+D RH
Sbjct: 1140 AEGTGLLDILGVEGVNSARTSTNNIYETYKTLGIEAARESIVKEIQYTIGQHGISVDTRH 1199

Query: 1170 MMLLADLMTFRGEVLGITRFGIQKM-DKSVLMLASFEKTADHLFNASVNGRDDRIEGVSE 1228
            + LLAD+M F GE+ G+TRFG+QKM   SVL LASFE+T +HLF AS +G +D+I GVSE
Sbjct: 1200 IGLLADVMCFTGEICGMTRFGLQKMGGSSVLTLASFEQTGEHLFTASYSGYEDQINGVSE 1259

Query: 1229 CIIMGIPMPLGTGILKI 1245
            CII G  +P+GTG  KI
Sbjct: 1260 CIISGQRIPIGTGSFKI 1276


>gi|390334195|ref|XP_781681.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like, partial
            [Strongylocentrotus purpuratus]
          Length = 681

 Score =  573 bits (1477), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 320/713 (44%), Positives = 439/713 (61%), Gaps = 56/713 (7%)

Query: 541  DYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIK 600
            +Y A A    M+R+AKL   ++ N GFSIGI DV P   L   + +L+ E Y  C+  I+
Sbjct: 2    EYAADA----MSRMAKLCPAYLSNRGFSIGIGDVTPGAGLLQAQKQLLHEGYSKCDEYIQ 57

Query: 601  EYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSP 660
            +   GKLQ + GC A +TLE++I   L+ IR+ AGKAC+  L   NSPL M+ CGSKGS 
Sbjct: 58   QLEVGKLQTQAGCTAEETLESMILKELSVIRDHAGKACLRELHKSNSPLNMAVCGSKGSF 117

Query: 661  INISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFF 720
            INISQM+ACVGQQ++ G+R PNGF DR+LPHF R ++ PAAKGFV NSFYSGL+ +EFFF
Sbjct: 118  INISQMIACVGQQAISGKRIPNGFEDRALPHFKRHSRIPAAKGFVKNSFYSGLTPSEFFF 177

Query: 721  HTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDP 780
            HTM GREGLVDTAVKTA+TGYM RRL+K+LEDL   YD +VRN+   I+QF YGDDG+DP
Sbjct: 178  HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSHYDQTVRNSMSDIIQFKYGDDGLDP 237

Query: 781  ANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNS 840
            A MEGK G+ ++  R+L  V+   P   +  L    +  +  + L +     CS+ F  +
Sbjct: 238  AAMEGK-GKQVDLPRVLQHVQNKYPSKKEYSLGSIDIRRMAGEILKSKEFAECSQEFKTT 296

Query: 841  LRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVK 900
            LR + +     L K  +  +      ++Q   +V ++    T  QL  F+  C ++++  
Sbjct: 297  LRDYIDECCTSLQKSRRAYKIA----EAQTEPDVLYQLHRFTSTQLHHFLTMCKTKHQ-- 350

Query: 901  RVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPII 960
                                                +IT GVPRIKEIIN +K ISTPII
Sbjct: 351  -----------------------------------RHITLGVPRIKEIINASKNISTPII 375

Query: 961  TAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCIN 1020
            TAEL+  ++ + AR+VKGRIEKTLLG+V++ I+ V       ++I LD++ I+   L ++
Sbjct: 376  TAELDIVNDADFARLVKGRIEKTLLGEVSEYIEEVFLPDNCFVLIKLDLDRIRLLKLEVS 435

Query: 1021 ADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP-VDKSKIHFELYSLKNVLPMVIVKGI 1079
            A+ +  SI  + K+K+K   ++ +    + + P    KS +++ L  LK  +  V+++G 
Sbjct: 436  AESICMSICAS-KLKVKPGQLRAVAENLITVEPAETSKSSMYYNLQFLKQSVANVVIQGS 494

Query: 1080 KTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQ 1139
              V R VI         + E   + KY+LLVEG  LQ V+   G+ G  T SN+  E+++
Sbjct: 495  PNVSRAVI--------HIDEKAGELKYKLLVEGDNLQGVIATRGVKGTHTTSNNTVEMEK 546

Query: 1140 TLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVL 1199
            TLGIEAAR CI+ EI  TM +HGMSID RH+MLL DLMT++  VLGITRFG+  M +SVL
Sbjct: 547  TLGIEAARRCIMSEIEYTMVSHGMSIDHRHVMLLGDLMTYKXXVLGITRFGLANMKESVL 606

Query: 1200 MLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAVP 1252
            MLASFE+T+DHLF A+  G+ D I GVSECIIMGIPM +GTGI K+  +   P
Sbjct: 607  MLASFERTSDHLFEAAYFGQKDAICGVSECIIMGIPMNVGTGIFKLLHKSDKP 659


>gi|315230006|ref|YP_004070442.1| DNA-directed RNA polymerase subunit A' [Thermococcus barophilus MP]
 gi|315183034|gb|ADT83219.1| DNA-directed RNA polymerase subunit A' [Thermococcus barophilus MP]
          Length = 906

 Score =  573 bits (1477), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 325/808 (40%), Positives = 470/808 (58%), Gaps = 60/808 (7%)

Query: 11  KTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAIT 70
           K  L+K I KK    A + + CP CG     +K          +R  +   L+       
Sbjct: 130 KDKLIKEIHKK----AKERMVCPHCGAPQFPLK---------FERPTIYWELRRDEQG-- 174

Query: 71  HTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAI 127
                    N   + + P  V    +++ D D  +L L     RPE +++T + VPP+ +
Sbjct: 175 ---------NEYKHRMMPTEVRDRLEKIPDRDLPLLGLHPEKSRPEWMVLTVLPVPPVTV 225

Query: 128 RPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINS 187
           RPS+ ++     E+D+T +L  II+ N  L+  +            W+ LQ  V  YIN+
Sbjct: 226 RPSITLESGIRAEDDLTHKLVDIIRINNRLKTNIEAGAPQLIIEDLWDLLQYHVTTYINN 285

Query: 188 DVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAI 246
           +  GVP +  +  RPL    QRLKGK+GRFRGNLSGKRV ++ RTVISPDP L I EV +
Sbjct: 286 ETSGVPAAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMLSINEVGV 345

Query: 247 PIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVE 306
           P+ +A  LT PE+V+D NIEKLR+ + NGP+KYPGA  +  P G    L    R  +A  
Sbjct: 346 PLAIAMELTVPEKVTDFNIEKLRKMVLNGPEKYPGANYVIDPQGRRIRLMESNRETIAEM 405

Query: 307 LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 366
           L  G  V+RHL DGD+VLFNRQPSLHRMSIM HR R+MP++T R N +VC PYNADFDGD
Sbjct: 406 LDIGWTVERHLMDGDIVLFNRQPSLHRMSIMAHRVRVMPYKTFRLNLAVCPPYNADFDGD 465

Query: 367 EMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 426
           EMN+HVPQTEEA+ EA +LM VQN++ +P+ G  ++   QD ++  +L+TR+  ++ R+ 
Sbjct: 466 EMNLHVPQTEEAQAEARILMEVQNHIISPRYGGPIIGGIQDHISGGYLLTREGAYFTRSE 525

Query: 427 FSLMCCYMGDGMDRVDLPTP-AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS 485
              M  + G  +D+  LP P  +   +E W+GK +FS+L+ P        +LT+    Y 
Sbjct: 526 VEQMLMFAGVDIDK--LPEPDKVEDGIEYWSGKTIFSLLL-PD-------DLTI---WYR 572

Query: 486 NKLI----RTEGDEEIRIETMCPN---------DGFVYFRNSELISGQLGKATLGNGNKD 532
           NKL     + E  E++  E + P+         DGFVY +N +L+SG + K     G +D
Sbjct: 573 NKLCDDPSKCEPLEKLIEEKLLPDPEEVRKLAYDGFVYIQNGKLLSGAIDKKAY--GRED 630

Query: 533 G-LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISEN 591
           G +  +++R+YG       ++++ KL+   I + GF+  IDD    +E  D+  ++I E 
Sbjct: 631 GKILDIIVREYGVERARQFLDQVTKLAIWVITHKGFTTAIDDEDLPEEAMDRIKEIIREA 690

Query: 592 YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIM 651
            E     I+ Y  G+L+  PG    +TLE+ I  +L   R++AGK     L   N  +IM
Sbjct: 691 EERVKRLIEAYKAGELEPLPGKTLEETLESKIMAVLAEARDNAGKVAEQYLGMNNFAVIM 750

Query: 652 SQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYS 711
           ++ G++G  +NI+QM A +GQQS+ G+R   G+  R L HF        A+GFV NS+ S
Sbjct: 751 AKTGARGKILNITQMAALLGQQSIRGKRLYRGYRGRVLSHFKPGDLGARARGFVINSYKS 810

Query: 712 GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQF 771
           GL+  E+FFH MGGREGLVDTAV+TA +GYM RRLI AL+DL + YD +VR+  G IVQF
Sbjct: 811 GLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQF 870

Query: 772 LYGDDGMDPANMEGKSGEPLNFDRLLMK 799
            YG+DG+DP  M+   G+ ++ DR++++
Sbjct: 871 RYGEDGVDP--MKSWQGKTVDIDRIIVR 896


>gi|390960610|ref|YP_006424444.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. CL1]
 gi|390518918|gb|AFL94650.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. CL1]
          Length = 905

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 326/808 (40%), Positives = 470/808 (58%), Gaps = 60/808 (7%)

Query: 11  KTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAIT 70
           K  L+K I KK    A + + CP CG     +K          +R  +   L++      
Sbjct: 130 KDRLIKEIHKK----AKERMVCPHCGAPQFPIK---------FERPTIYWELRKDEEG-- 174

Query: 71  HTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAI 127
                    N   + + P  V    +++ D D  +L L     RPE +++T + VPP+ +
Sbjct: 175 ---------NEYRHRMMPSEVRDRLEKIPDKDLPLLGLHPEKARPEWMVLTVLPVPPVTM 225

Query: 128 RPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINS 187
           RPS+ ++     E+D+T +L  II+ N  L+  +            W+ LQ  V  YIN+
Sbjct: 226 RPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINN 285

Query: 188 DVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAI 246
           +  G+P +  +  RPL    QRLKGK+GRFRGNLSGKRV ++ RTVISPDP + I EV +
Sbjct: 286 ETSGIPPAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGV 345

Query: 247 PIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVE 306
           PI +A  LT PE+V++ N EKL++ + NGP+KYPGA  +  P+G    L       +A  
Sbjct: 346 PIAVAMELTVPEKVTEFNFEKLKKMVLNGPEKYPGANYVIDPEGRRIRLMENNLEIIAER 405

Query: 307 LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 366
           L  G  V+RHL DGD+VLFNRQPSLHRMSIM HR R+MP+RT R N SVC PYNADFDGD
Sbjct: 406 LDLGWTVERHLLDGDIVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLSVCPPYNADFDGD 465

Query: 367 EMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 426
           EMN+HVPQTEEA+ EA +LM VQN++ +P+ G  L+A  QD ++  +L+TR+  ++ R+ 
Sbjct: 466 EMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFTRSE 525

Query: 427 FSLMCCYMGDGMDRVDLPTP-AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS 485
              M  + G  +D+  LP P  +   VELW+GK +FS+L+          +LT+    Y 
Sbjct: 526 VEQMLMFAGINVDK--LPEPDKVENGVELWSGKTIFSLLLPD--------DLTI---WYR 572

Query: 486 NKLI----RTEGDEEIRIETMCPN---------DGFVYFRNSELISGQLGKATLGNGNKD 532
           NKL     R E  E++  E + P+         DGF Y +N +L+SG + K     G +D
Sbjct: 573 NKLCDEPERCEALEKLIEEKLVPDPEEVRKLAYDGFTYIQNGKLLSGAIDKKAY--GRED 630

Query: 533 G-LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISEN 591
           G L  +++R+YG       ++++ KL+   I + GF+  IDD    +E  D+  ++I E 
Sbjct: 631 GKLLDIIVREYGVERARQFLDQVTKLAIWVITHKGFTTAIDDEDLPREALDRIHEIIREA 690

Query: 592 YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIM 651
            E     I+ Y  G+L+  PG    +TLE+ I  +L   R++AGK     L   N  +IM
Sbjct: 691 EERVERLIEAYKNGELEPLPGKTLEETLESNIMAVLAEARDNAGKVAEKYLGMGNHAVIM 750

Query: 652 SQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYS 711
           ++ G++G  +NI+QM A +GQQS+ G+R   G+  R L HF        A+GFV NS+ S
Sbjct: 751 AKTGARGKMLNITQMAAMLGQQSIRGKRLYRGYRGRVLTHFKPGDLGARARGFVTNSYKS 810

Query: 712 GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQF 771
           GL+  E+FFH MGGREGLVDTAV+TA +GYM RRLI AL+DL + YD +VR+  G IVQF
Sbjct: 811 GLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQF 870

Query: 772 LYGDDGMDPANMEGKSGEPLNFDRLLMK 799
            YG+DG+DP  M+   G+ ++ DR++++
Sbjct: 871 KYGEDGIDP--MKSWQGKTVDVDRVIVR 896


>gi|324120512|dbj|BAJ78647.1| RNA polymerase II largest subunit [Petrobiellus takunagae]
          Length = 1882

 Score =  571 bits (1471), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 357/1000 (35%), Positives = 540/1000 (54%), Gaps = 93/1000 (9%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L    V  +FK ++D +C +L +     RP+ +I+T + VPP+A+RP+V+M GS  N++
Sbjct: 189  VLTAERVWEIFKHISDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMYGSARNQD 248

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
            D+T +L  II+ N  L +      +A       + LQ   A  +++D+ G+P +MQ + R
Sbjct: 249  DLTHKLADIIKANNELLRNEQAGGAAHVIAENVKMLQFHAATLVDNDMPGLPRAMQKSGR 308

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            PL     RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ LT+PE V
Sbjct: 309  PLKALKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIV 368

Query: 261  SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
            +  NI+K++  ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ +
Sbjct: 369  TPFNIDKMQDLVRRGNSQYPGAKYIIRDNGERIDL--RFHPKPSDLHLQCGYKVERHIRE 426

Query: 320  GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
            GD+++FNRQP+LH+MS+M HR +++PW T R N SV +PYNADFDGDEMN+HVPQ+ E R
Sbjct: 427  GDLIIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETR 486

Query: 380  TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDG 437
             E   +      + TP+  + ++   QD LT+   +T++D F ++      LM   + DG
Sbjct: 487  AEVENIHITARQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMHLPIWDG 546

Query: 438  MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
                 +P PAILKP  +WTGKQ+FS++I  + NM          +T+S      + +++ 
Sbjct: 547  ----KMPQPAILKPKLMWTGKQVFSLIIPGNVNMI---------RTHST---HPDDEDDG 590

Query: 498  RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
              + + P D  V   + EL+ G L K TLG  +   L  + + + G          +  +
Sbjct: 591  AYKWISPGDTKVMVEHGELVMGILCKKTLG-ASAGSLLHICMLELGHEVAGRFYGNIQTV 649

Query: 558  SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
               W+   G SIGI D     +   +  K I +  E     I++ +  +L+  PG    Q
Sbjct: 650  INNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQ 709

Query: 618  TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
            T E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G
Sbjct: 710  TFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEG 769

Query: 678  RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            +R P GF  R+LPHF +    P ++GFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA
Sbjct: 770  KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 829

Query: 738  DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
            +TGY+ RRLIKA+E + + YD ++RN+ G ++Q  YG+DG+    +E ++   +      
Sbjct: 830  ETGYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGETVEFQTQPTIKLSNKA 889

Query: 798  MKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG----------------KESCSEAFLN-- 839
             + +    P  +RYL  +  +E + K+L   G                +ES  + F N  
Sbjct: 890  FEKRFKFDPQNERYLR-RIFNEDIMKELMGSGEVISELEREWDQLQKDRESLRQIFPNGD 948

Query: 840  --------------SLRKFFE----------------GQQDKLDKKIKFVEDIGWDDKS- 868
                          +++K F                 G Q+ L K I    D      + 
Sbjct: 949  NKAVLPCNLQRMIWNVQKIFHINKRAATDLSPLKVIRGVQNLLSKCIIVAGDDHLSRMAN 1008

Query: 869  -------QILEEVTHKTSGITE------KQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQS 915
                   Q L   T  T  + E      +  E  I    +R++  +V+ G  +GA+ AQS
Sbjct: 1009 ANATLLFQCLVRATLCTRRVAEEFRLSSEAFEWLIGEIETRFQQAQVQPGEMVGALAAQS 1068

Query: 916  IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL---ECNDNENA 972
            +GEP TQMTL TFHFAGV+S N+T GVPR+KEIIN +K+   P +T  L      D E A
Sbjct: 1069 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKA 1128

Query: 973  ARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              V+  R+E T L +V  +  I       + VI  D E +
Sbjct: 1129 KNVL-CRLEHTTLRKVTANTAIYYDPDPQNTVITEDQEFV 1167



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 105/183 (57%), Gaps = 6/183 (3%)

Query: 1069 NVLPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAE 1122
            N+L  + ++GI+ + +V +   + + +K   + + GE K   ++ L  +GT L  V+   
Sbjct: 1265 NMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITDTGEFKAIAEWLLETDGTSLMKVLSER 1324

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
             +D  +T SN I E+   LGIEA R  +  E+N  ++ +G+ ++ RH+ LL D+MT +G 
Sbjct: 1325 DVDPVRTFSNDICEIFAVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGH 1384

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            ++ ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    +GTG 
Sbjct: 1385 LMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEQDPMRGVSENIIMGQLPRMGTGC 1444

Query: 1243 LKI 1245
              +
Sbjct: 1445 FDL 1447


>gi|375083052|ref|ZP_09730090.1| DNA-directed RNA polymerase subunit A' [Thermococcus litoralis DSM
           5473]
 gi|374742288|gb|EHR78688.1| DNA-directed RNA polymerase subunit A' [Thermococcus litoralis DSM
           5473]
          Length = 905

 Score =  571 bits (1471), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 309/734 (42%), Positives = 445/734 (60%), Gaps = 26/734 (3%)

Query: 80  NVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGS 136
           N   + + P  +    +++ D D  +L L     RPE +++T + VPP+ +RPS+ ++  
Sbjct: 175 NEYKHRMMPSEIRDRLEKIPDKDLPLLGLDPEKSRPEWMVLTVLPVPPVTVRPSITLESG 234

Query: 137 QSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS- 195
              E+D+T +L  II+ NA L+Q +            W+ LQ  V  Y +++  G+P + 
Sbjct: 235 IRAEDDLTHKLVDIIRINARLKQNIEAGAPQLIIEDLWDLLQYHVTTYFDNETSGIPPAK 294

Query: 196 MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            +  RPL    QRLKGK+GRFR NLSGKRV ++ RTVISPDP + I EV +P+ +A  LT
Sbjct: 295 HKSGRPLKTLAQRLKGKEGRFRKNLSGKRVNFSARTVISPDPMISINEVGVPLVVAMELT 354

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
            PE+V++ NIEKLR+ I NGP+KYPGA  +  P G    L    R  +A  L  G  V+R
Sbjct: 355 VPEKVTEFNIEKLRKMILNGPEKYPGANYVIDPQGRRIRLMESNRGTIANMLDIGWTVER 414

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           HL DGD+VLFNRQPSLHRMSIM HR R+MP++T R N +VC PYNADFDGDEMN+HVPQT
Sbjct: 415 HLLDGDIVLFNRQPSLHRMSIMAHRVRVMPYKTFRLNLAVCPPYNADFDGDEMNLHVPQT 474

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
           EEA+ EA +LM VQN++ +P+ G  ++   QD ++  +L+TR+  ++ +     M  +  
Sbjct: 475 EEAQAEAKILMEVQNHILSPRYGGPIIGGIQDHISGGYLLTREGAYFTKYEVEQMLMFA- 533

Query: 436 DGMDRVDLPTP-AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVK--------EKTYSN 486
            G+D  +LP P  +   VE W+GK +FS+L+ P      Y N            EK    
Sbjct: 534 -GVDVKELPKPDKVENGVEYWSGKTIFSLLL-PDDLTIWYRNKLCDDPSQCEPIEKLIEE 591

Query: 487 KLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDG-LYSVLLRDYGAH 545
           KL+ +E  EEIR       DGFVY RN +L+SG + K     G +DG +  +++R+YG  
Sbjct: 592 KLVPSE--EEIR---EVATDGFVYIRNGKLLSGAIDKKAY--GREDGKILDIIVREYGVE 644

Query: 546 ATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEG 605
                ++++ KL+   I + GF+ GIDD     E   +  ++I E  +     I+ Y  G
Sbjct: 645 RARQFLDQVTKLAIWVITHKGFTTGIDDEDLPDEAKARIREIIMEAEDKVQRLIEAYKNG 704

Query: 606 KLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQ 665
           +L+  PG    +TLE+ I  +L+  R++AGK     L   N  +IM++ G++G  +NI+Q
Sbjct: 705 ELEPLPGKTLEETLESKIMAVLSEARDNAGKVAEKYLGMNNHTVIMAKTGARGKILNITQ 764

Query: 666 MVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGG 725
           M A +GQQS+ G+R   G+ +R L HF        AKGF+ NS+ SGL+  E+FFH MGG
Sbjct: 765 MAAMLGQQSIRGKRLYRGYRNRVLSHFKPGDLGARAKGFIVNSYKSGLTPQEYFFHAMGG 824

Query: 726 REGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEG 785
           REGLVDTAV+TA +GYM RRLI AL+DL + YD +VR+  G IVQF YG+DG+DP  M+ 
Sbjct: 825 REGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQFRYGEDGVDP--MKS 882

Query: 786 KSGEPLNFDRLLMK 799
             G+ ++ DR++M+
Sbjct: 883 WGGKTVDVDRVIMR 896


>gi|156937038|ref|YP_001434834.1| DNA-directed RNA polymerase subunit A' [Ignicoccus hospitalis
           KIN4/I]
 gi|156566022|gb|ABU81427.1| DNA-directed RNA polymerase, subunit A' [Ignicoccus hospitalis
           KIN4/I]
          Length = 889

 Score =  570 bits (1469), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 302/723 (41%), Positives = 439/723 (60%), Gaps = 26/723 (3%)

Query: 84  YILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNE 140
           + LNP  V    + + D D +VL       RPE  ++T + VPP+ +RPS+I++    +E
Sbjct: 182 HYLNPEEVRSRLENIPDKDAKVLGFDPKEARPEWAVLTVLPVPPVTVRPSIILETGMRSE 241

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVA 199
           +D+T +L  I++TN  L++ +    S       W  LQ  VA + ++++ G+P +  +  
Sbjct: 242 DDLTHKLADIVRTNNKLRENIESGASEAMIENLWGLLQYHVATFFDNEIPGIPPARHRSG 301

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           +PL    QRLKGK+GRFR NLSGKRV+++ RTVISPDPN+ I EV +PI +A+ LT P +
Sbjct: 302 KPLRTLAQRLKGKEGRFRSNLSGKRVDFSARTVISPDPNISINEVGVPIEVAKTLTVPVK 361

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLE 318
           V+  NIE++R+ + NGPDK+PGA  +   DG    L Y K R  +A  L+ G  V+RHL+
Sbjct: 362 VTPWNIEEMRKLVINGPDKWPGANYVIMKDGRRIDLRYAKDRKIIAESLQPGWTVERHLQ 421

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGDVVLFNRQPSLHRMSIM H  R++P +T R    VC PYNADFDGDEMN+HVPQ+EEA
Sbjct: 422 DGDVVLFNRQPSLHRMSIMAHLVRVLPGKTFRLCPLVCPPYNADFDGDEMNLHVPQSEEA 481

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG-DG 437
           R EAL LM V+ ++ +P+ G  ++   QD+++ ++L+T   T  DR+    +    G +G
Sbjct: 482 RAEALELMLVEKHILSPRYGGPIIGGLQDYISGAYLLTTVATLLDRSDVQELLGVTGYEG 541

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
               +LP PAIL P  +WTGKQLFSV +    N     N++  E          + D+E 
Sbjct: 542 ----ELPEPAILSPKTVWTGKQLFSVFLPKDFNYSGKANISTGE---------LKCDDE- 587

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
                C  D FV  R+ EL+ G L K ++G+     L   ++ +YG        +R  K+
Sbjct: 588 ----YCFYDSFVVVRDGELVEGVLDKKSIGHEQPKSLMHWIVYEYGPEKGREIYDRAFKM 643

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             R+I   GF+   DDV+   E   +  +++ E YE     I+++  G L+  PG    +
Sbjct: 644 FLRFIEKRGFTTRYDDVRLPPEAKKEIEEVLKEAYEEVEKLIEDFKNGLLEPLPGRTLEE 703

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           TLE +I D+L + R+ AG+     L   N+ +IM++ G++G+ +N++QM A +GQQSV G
Sbjct: 704 TLELMIMDVLAKARDKAGEIAAKYLSPLNNAVIMAKAGARGNILNLTQMAALLGQQSVRG 763

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            R   G+  R+LPHF      P A+GFV +SFY GL+ TE FFH  GGREGLVDTAV+T+
Sbjct: 764 ERIKRGYRKRTLPHFEWGDISPDARGFVKHSFYEGLTPTEVFFHAAGGREGLVDTAVRTS 823

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
            +GYM RRLI AL+DL + YD +V++A G + Q +YGDDG+DP  M+   GE ++   ++
Sbjct: 824 QSGYMQRRLINALQDLKVDYDGTVKDAWGALYQSVYGDDGVDP--MKSAHGESVDVKHVI 881

Query: 798 MKV 800
            KV
Sbjct: 882 EKV 884


>gi|350590849|ref|XP_003483150.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sus scrofa]
          Length = 1092

 Score =  570 bits (1469), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 347/914 (37%), Positives = 511/914 (55%), Gaps = 67/914 (7%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L+P  V  +FKR++D +C VL +     RPE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215  LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
            D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275  DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335  PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261  SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
            +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395  TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320  GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
            GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453  GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380  TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
             E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513  AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440  RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573  KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499  IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                 P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622  ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559  ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
              W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677  NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNN-ELEPTPGNTLRQ 735

Query: 618  TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
            T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736  TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678  RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796  KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738  DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
            +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856  ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798  MKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFL------NSLRKFFEGQQDK 851
                AT  P+ + +    +     E+ L    +E   +  L      N L + FE  ++ 
Sbjct: 907  ----ATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMRE- 961

Query: 852  LDKKIKFVEDIGWDDK----SQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTA 907
             D+++  V     D K      +L  + +              Q             G  
Sbjct: 962  -DREVLRVIFPTGDSKVVLPCNLLRMIWNA-------------QKIXXXXXXXXAHPGEM 1007

Query: 908  IGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--- 964
            +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+  TP +T  L   
Sbjct: 1008 VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQ 1067

Query: 965  ECNDNENAARVVKG 978
               D E A R  KG
Sbjct: 1068 SARDAERAKRFYKG 1081


>gi|169806385|ref|XP_001827937.1| DNA-directed RNA polymerase, beta' subunit-160 kD subunit
           [Enterocytozoon bieneusi H348]
 gi|161779005|gb|EDQ31032.1| DNA-directed RNA polymerase, beta' subunit-160 kD subunit
           [Enterocytozoon bieneusi H348]
          Length = 1174

 Score =  570 bits (1469), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 327/801 (40%), Positives = 462/801 (57%), Gaps = 92/801 (11%)

Query: 13  DLMKSIVKKCSTM-----------------ASKAVKCPRCGYINGMVKKAVAVLGIIHDR 55
           +++ SI KKCS++                   K  +C  C   NG+VKK+     I H+ 
Sbjct: 94  NILNSICKKCSSLLIKNKHDIKSKVNIVDQCKKIKQCYNCNSFNGIVKKSNG-FRIFHEF 152

Query: 56  SKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS-ERPEK 114
            K     ++         E           LNP+ V  LFK + +TD  +L+LS + P  
Sbjct: 153 RKSNSKSKDMEDNKLFCDE-----------LNPLTVYNLFKNIKETD--LLFLSCKNPCN 199

Query: 115 LIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGW 174
           L+I  + VPP  IRPSV MD    NE+D+T +L  II  N  +++ + +  S       W
Sbjct: 200 LLIKTLLVPPCCIRPSVDMDQDGFNEDDLTVKLSEIINCNNLIEENIKKGASLITLNEDW 259

Query: 175 ETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVIS 234
           + LQ+++A YINSD+  +  +      +   + RLKGKQGRFR NLSGKRV+++GRTVIS
Sbjct: 260 DYLQLQIALYINSDLPSIHITNN--DNIKSIIHRLKGKQGRFRMNLSGKRVDFSGRTVIS 317

Query: 235 PDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-----RYPD 289
           P+PNL I ++ +P  +A  +T PE+V+  N E+L+  + NGP+   GA  I     R  +
Sbjct: 318 PNPNLSIEQIGVPKEIALEMTIPEKVTVFNKEELQILVNNGPNCIDGANYIIRNEVRNNE 377

Query: 290 GTARVLYGKF-RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 348
                ++ KF +N    ELK G IV+RH++DGD+VLFNRQPSLHRMSIM HR ++   RT
Sbjct: 378 TRTFKIFLKFAKNPKVRELKVGDIVERHIKDGDIVLFNRQPSLHRMSIMAHRVKLHDNRT 437

Query: 349 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDF 408
            +FNESVCNPYNADFDGDEMN+H+PQT+ A+ EA+ LM ++ N+CT KN E L++ TQDF
Sbjct: 438 FQFNESVCNPYNADFDGDEMNIHLPQTKAAQAEAIELMSIKKNICTIKNNEPLISPTQDF 497

Query: 409 LTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKP---VELWTGKQLFSVLI 465
           +T  +L+T K+    +  F  +  ++  G   +  P+  I K    ++L+TGKQ+   ++
Sbjct: 498 ITGMYLLTNKNKILTKTEFYKLIGHIHHGKRIIIEPSIIIYKSTTVIKLFTGKQIVDYML 557

Query: 466 RPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKAT 525
                  V +NL  K +                      N   V  +NS+LI G + K+ 
Sbjct: 558 HS-----VTINLKTKNR----------------------NKEDVIIKNSKLIQGTIDKSI 590

Query: 526 LGNGNKDGLYSVLLRDYGAHATSGC---MNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
           +G  NK+   S L+      +   C   +N ++K+S R+I  +GFSIG+DD+    +L+ 
Sbjct: 591 IGAENKN---SSLIYQLFKQSKVECIKFINNISKISIRYIMEYGFSIGLDDIYLSNDLNR 647

Query: 583 KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
            K KL+     + N   KE N+G              E   T +LN+IRED G  C+ +L
Sbjct: 648 SKNKLV---LNIINTINKECNDG----------TNRSELKKTSLLNKIREDCGTMCLNTL 694

Query: 643 PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPH---FPRKAKEP 699
              N+ ++M++CGSKGS INISQM+ CVGQQ V G R  NG  D+++PH    P    + 
Sbjct: 695 NKNNAAVVMAECGSKGSKINISQMITCVGQQIVSGMRIQNGMYDKTIPHMKNIPNILDDV 754

Query: 700 AAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDN 759
             +GFV NSF++GL A EFFFH + GREGLVDTAVKTADTGYM RRL+KALE+LSI+YDN
Sbjct: 755 IYRGFVYNSFFTGLKAYEFFFHAISGREGLVDTAVKTADTGYMQRRLMKALENLSIKYDN 814

Query: 760 SVRNAGGCIVQFLYGDDGMDP 780
           +VRN    I+QFLYG+DG DP
Sbjct: 815 TVRNNNNEIIQFLYGEDGKDP 835



 Score =  243 bits (619), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 149/346 (43%), Positives = 203/346 (58%), Gaps = 31/346 (8%)

Query: 900  KRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPI 959
            K +E GTA+GAI AQSIGEPGTQMTLKTFHFAGVASMNIT GVPRIKEIIN    ISTPI
Sbjct: 847  KFIEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINATSTISTPI 906

Query: 960  ITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCI 1019
            I+ +   N N   A ++K ++EK +L  + K I I+ T          +         CI
Sbjct: 907  ISVK---NVNLQDAYIIKQKLEKNVLKDIIKRIDIMYTH---------EKNIFNMIFTCI 954

Query: 1020 NADIVKESIVQTPKIKLKQQHIKVLD-FRKLEIFPPVDKSKIH-FELYSLKNVLPMVIVK 1077
            +   +  +I++   IK        +D F          K K + F ++ +KN L    + 
Sbjct: 955  SP--LDNNILEKLCIKPLSSKYNTMDLFNDNNYNYYQYKFKYNGFNIFKIKNTLLNTQIS 1012

Query: 1078 GIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGT--GLQAVMGAEGIDGCKTKSNHIF 1135
            G+    +V I E  K+            Y LL+  +   L  ++G E I+   T +N+I 
Sbjct: 1013 GLTNTNKVFIKETNKD------------YELLISSSFGDLPYILGTEFINPYTTITNNIL 1060

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E++ TLGIEAAR  II+EI  T+  HG+ I+ RH+MLLAD MT +G VLGITRFG++  +
Sbjct: 1061 EIESTLGIEAARESIINEIEYTIGTHGIQINCRHLMLLADTMTIKGHVLGITRFGMKYFN 1120

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             S LMLASFE+T+D LF A++  R+D + GVS+ II+G  + +GTG
Sbjct: 1121 -STLMLASFEQTSDFLFQAAIEEREDIVSGVSDSIILGKNISIGTG 1165


>gi|212223364|ref|YP_002306600.1| DNA-directed RNA polymerase subunit A' [Thermococcus onnurineus
           NA1]
 gi|212008321|gb|ACJ15703.1| Subunit A' of DNA-dependent RNA polymerase [Thermococcus onnurineus
           NA1]
          Length = 905

 Score =  570 bits (1469), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 325/808 (40%), Positives = 471/808 (58%), Gaps = 60/808 (7%)

Query: 11  KTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAIT 70
           K  L+K I KK    A + + CP CG     +K          +R  +   L+       
Sbjct: 130 KDRLIKEIHKK----AKERMVCPHCGAPQFPIK---------FERPTIYWELRRDEEG-- 174

Query: 71  HTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAI 127
                    N   + + P  V    +++ D D  +L L     RPE +++T + VPP+ +
Sbjct: 175 ---------NEYRHRMMPSEVRDRLEKIPDKDLPLLGLHPEKARPEWMVLTVLPVPPVTM 225

Query: 128 RPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINS 187
           RPS+ ++     E+D+T +L  II+ N  L+  +            W+ LQ  V  YIN+
Sbjct: 226 RPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINN 285

Query: 188 DVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAI 246
           +  G+P +  +  RPL    QRLKGK+GRFRGNLSGKRV ++ RTVISPDP + I EV +
Sbjct: 286 ETSGIPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGV 345

Query: 247 PIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVE 306
           PI +A  LT PE+V++ N EKL++ + NGP+KYPGA  +  P+G    L       +A +
Sbjct: 346 PIAVAMELTVPEKVTEFNYEKLKKMVLNGPEKYPGANYVIDPEGRRIRLMENNLEIIAEK 405

Query: 307 LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 366
           L  G  V+RHL DGD+VLFNRQPSLHRMSIM HR R+MP++T R N +VC PYNADFDGD
Sbjct: 406 LDIGWTVERHLLDGDIVLFNRQPSLHRMSIMAHRVRVMPYKTFRLNLAVCPPYNADFDGD 465

Query: 367 EMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 426
           EMN+HVPQTEEA+ EA +LM VQN++ +P+ G  L+A  QD ++  +L+TR+  ++ R+ 
Sbjct: 466 EMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFTRSE 525

Query: 427 FSLMCCYMGDGMDRVDLPTP-AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS 485
              M  + G  +D+  LP P  +   VELW+GK +FS+L+ P        +LT+    Y 
Sbjct: 526 VEQMLMFAGVDVDK--LPKPDKVENGVELWSGKTIFSLLL-PE-------DLTI---WYR 572

Query: 486 NKLI----RTEGDEEIRIETMCPN---------DGFVYFRNSELISGQLGKATLGNGNKD 532
           NKL     R E  E++  E + P+         DGF Y  N +L+SG + K     G +D
Sbjct: 573 NKLCDDPERCEALEKLIEEKLIPDEEEVRKLAYDGFTYILNGKLLSGVVDKKAY--GRED 630

Query: 533 G-LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISEN 591
           G +  +++R+YG       ++++ KL+   I + GF+  IDD     E  D+  ++I E 
Sbjct: 631 GKILDIIVREYGVERARQFLDQVTKLAIWVITHKGFTTAIDDEDLPTEALDRIKEIIREA 690

Query: 592 YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIM 651
            E  N  I+ Y  G+L+  PG    +TLE+ I  +L   R++AGK     L   N  +IM
Sbjct: 691 EERVNRLIEAYKNGELEPLPGKTLEETLESNIMAVLAEARDNAGKVAEKYLGMTNHAVIM 750

Query: 652 SQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYS 711
           ++ G++G  +NI+QM A +GQQS+ G+R   G+ +R L HF        A+GFV NS+ S
Sbjct: 751 AKTGARGKMLNITQMAAMLGQQSIRGKRLYRGYRERVLTHFRPGDLGARARGFVVNSYKS 810

Query: 712 GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQF 771
           GL+  E+FFH MGGREGLVDTAV+TA +GYM RRLI AL+DL + YD +VR+  G IVQF
Sbjct: 811 GLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQF 870

Query: 772 LYGDDGMDPANMEGKSGEPLNFDRLLMK 799
            YG+DG+DP  M+   G+ ++ DR++++
Sbjct: 871 KYGEDGVDP--MKSWQGKTVDVDRVIVR 896


>gi|337283878|ref|YP_004623352.1| DNA-directed RNA polymerase subunit alpha [Pyrococcus yayanosii
           CH1]
 gi|334899812|gb|AEH24080.1| DNA-directed RNA polymerase subunit alpha [Pyrococcus yayanosii
           CH1]
          Length = 907

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 312/741 (42%), Positives = 447/741 (60%), Gaps = 40/741 (5%)

Query: 80  NVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGS 136
           N   + + P  V    +++ D D  +L L     RPE +++T + VPP+ +RPS+ ++  
Sbjct: 175 NEYRHRMMPTEVRDRLEKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTVRPSITLETG 234

Query: 137 QSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS- 195
              E+D+T +L  II+ N  L+Q +            W+ LQ  V  YIN++  G+P + 
Sbjct: 235 IRAEDDLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGIPPAK 294

Query: 196 MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
            +  R L    QRLKGK+GRFRGNLSGKRV ++ RTVISPDP + I EV +PI +A  LT
Sbjct: 295 HKSGRTLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPIEIAMELT 354

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
            PE+V++ NIEKLR+ + NGP+KYPGA  +  P+G    +    R  LA  L  G  V+R
Sbjct: 355 VPEKVTEFNIEKLRKMVLNGPEKYPGANYVIDPEGRRIRIMDSNRELLAERLDIGWTVER 414

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           HL DGD+VLFNRQPSLHRMSIM HR R+MP++T R N +VC PYNADFDGDEMN+HVPQT
Sbjct: 415 HLLDGDIVLFNRQPSLHRMSIMAHRVRVMPYKTFRLNLAVCPPYNADFDGDEMNLHVPQT 474

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
           EEA+ EA +LM VQN++ +P+ G  ++   QD ++  +L+TR+  ++ R     M  +  
Sbjct: 475 EEAQAEARILMEVQNHIISPRYGGPIIGGIQDHISGGYLLTREGAYFTREEVEQMLMFA- 533

Query: 436 DGMDRVDLPTPAIL---KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI--- 489
            G+D  +LP P      KP  LW+GK +FS+L+          +LTV    Y NKL    
Sbjct: 534 -GVDVKELPEPDKYENGKP--LWSGKTIFSLLLPD--------DLTV---WYRNKLCDEP 579

Query: 490 -RTEGDEEIRIETMCPN---------DGFVYFRNSELISGQLGKATLGNGNKDG-LYSVL 538
            R E  E++  E + P+         DGFVY +N +L+SG + K     G +DG +  ++
Sbjct: 580 ERCEALEKLIEEKLMPDPEEVRKLAYDGFVYIQNGKLLSGAIDKKAY--GREDGIILDLI 637

Query: 539 LRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVK 598
           +R+YG       ++++ KL+   I + GF+  IDD    +E  D+  ++I E  E     
Sbjct: 638 VREYGVERARQFLDQVTKLAIWVITHKGFTTAIDDEDLPQEAIDRIKEIIREAEERVERL 697

Query: 599 IKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKG 658
           I+ Y  G+L+  PG    +TLE+ I  +L   R++AG      L   N  +IM++ G++G
Sbjct: 698 IEAYRRGELEPLPGKTIEETLESKIMAVLAEARDNAGSVAERYLGMDNHTVIMAKTGARG 757

Query: 659 SPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEF 718
             +NI+QM A +GQQS+ G+R   G+  R L HF        A+GFV NS+ SGL+  E+
Sbjct: 758 KILNITQMAALLGQQSIRGKRLYRGYRGRVLTHFKPGDLGARARGFVVNSYKSGLTPQEY 817

Query: 719 FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
           FFH MGGREGLVDTAV+TA +GYM RRLI AL+DL + YD +VR+  G IVQF YG+DG+
Sbjct: 818 FFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPNGVIVQFRYGEDGI 877

Query: 779 DPANMEGKSGEPLNFDRLLMK 799
           DP  M+   G+ ++ DR++M+
Sbjct: 878 DP--MKSWGGKTVDVDRIIMR 896


>gi|409095098|ref|ZP_11215122.1| DNA-directed RNA polymerase subunit A' [Thermococcus zilligii AN1]
          Length = 907

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 324/808 (40%), Positives = 471/808 (58%), Gaps = 60/808 (7%)

Query: 11  KTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAIT 70
           + DL++ I KK    A + + CP CG     +K          +R  V   L++      
Sbjct: 130 RDDLIREIHKK----AKERMVCPHCGAPQFPLK---------FERPTVYWELRKDEEG-- 174

Query: 71  HTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAI 127
                    N   + + P  +    +R+ D D  +L L   + RPE +++T + VPP+ +
Sbjct: 175 ---------NDYRHRMMPNEIRDRLERIPDGDLPLLGLHPENSRPEWMVLTVLPVPPVTM 225

Query: 128 RPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINS 187
           RPS+ ++     E+D+T +L  II+ N  L+  +            W+ LQ  V  YIN+
Sbjct: 226 RPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINN 285

Query: 188 DVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAI 246
           +  GVP +  +  RPL    QRLKGK+GRFRGNLSGKRV ++ RTVISPDP + I EV +
Sbjct: 286 ETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGV 345

Query: 247 PIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVE 306
           PI +A  LT PE+V++ N EKL++ + NGP+KYPGA  +  P+G    L       +A +
Sbjct: 346 PIAIAMELTVPEKVTEFNFEKLKERVLNGPEKYPGANYVIDPEGKRIRLMESNLKTIAEK 405

Query: 307 LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 366
           L  G  V+RHLEDGD+VLFNRQPSLHRMSIM HR R+MP+RT R N SVC PYNADFDGD
Sbjct: 406 LDIGWTVERHLEDGDIVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLSVCPPYNADFDGD 465

Query: 367 EMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 426
           EMN+HVPQTEEA+ EA +LM VQN++ +P+ G  ++A  QD ++  +L+TR+  ++ R  
Sbjct: 466 EMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPIIAGIQDHISGGYLLTREGAYFTRLE 525

Query: 427 FSLMCCYMGDGMDRVDLPTPAILKPVE-LWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS 485
              M  + G  +D+  LP P   +  + LW+GK +FS+L+          +LT+    Y 
Sbjct: 526 VEQMIAFAGIDVDK--LPEPDKFENGQPLWSGKTVFSLLLPS--------DLTI---WYR 572

Query: 486 NKLI----RTEGDEEIRIETMCPN---------DGFVYFRNSELISGQLGKATLGNGNKD 532
           NKL     R E  E++  E + P+         DGFVY +N  L+SG + K     G +D
Sbjct: 573 NKLCDEPERCEALEKLIEEKLLPDPEEVRKLACDGFVYIQNGRLLSGAIDKTVY--GRED 630

Query: 533 G-LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISEN 591
           G L  V++R+YG       ++++ +L+   I + GF+  IDD    +E  D+  ++  E 
Sbjct: 631 GKLLDVIVREYGVERARQFLDQVTRLTIWVITHRGFTTAIDDEDLPEEALDRIKEIAREA 690

Query: 592 YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIM 651
            E     I+ Y  G+L+  PG    +TLE+ I  +L   R++AGK     L   N  +IM
Sbjct: 691 EEKVQKLIEAYKRGELEPLPGKSLEETLESRIMAVLAEARDNAGKVAERYLGMGNHAVIM 750

Query: 652 SQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYS 711
           ++ G++G  +NI+QM A +GQQS+ G+R   G+  R L HF        A+GFV NS+ S
Sbjct: 751 AKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRGRVLTHFKPGDLGARARGFVTNSYKS 810

Query: 712 GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQF 771
           GL+  E+FFH MGGREGLVDTAV+TA +GYM RRLI AL+DL + YD +VR+  G IVQF
Sbjct: 811 GLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQF 870

Query: 772 LYGDDGMDPANMEGKSGEPLNFDRLLMK 799
            YG+DG+DP  M+   G+ ++ +R++++
Sbjct: 871 KYGEDGVDP--MKSWQGKTVDVNRVIVR 896


>gi|305663642|ref|YP_003859930.1| DNA-directed RNA polymerase, subunit A' [Ignisphaera aggregans DSM
           17230]
 gi|304378211|gb|ADM28050.1| DNA-directed RNA polymerase, subunit A' [Ignisphaera aggregans DSM
           17230]
          Length = 884

 Score =  567 bits (1461), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 305/780 (39%), Positives = 465/780 (59%), Gaps = 47/780 (6%)

Query: 26  ASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKAAVNVATYI 85
           A K   CP CG     +K                  L++  + +   +ESK  V      
Sbjct: 142 AIKVTVCPHCGAKQPKIK------------------LEKPTTFVEQHEESKEVVR----- 178

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           LNP+ V    +R+ + D E+L       RPE ++ T + VPP +IRPS++++    +E+D
Sbjct: 179 LNPLTVRSRLERIPNEDIELLGYDPRDSRPEWMVFTVLPVPPTSIRPSILIETGIRSEDD 238

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  I++TN  L++ +            WE LQ  V  Y++++V G+P +  +  RP
Sbjct: 239 LTHKLVDIVRTNERLREHISAGAPQIIIDDLWELLQYHVTTYLDNEVPGLPPAKHRSGRP 298

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRGNLSGKRV+Y+ RTVISP+P L I EV +PI +A+ILT PE+V+
Sbjct: 299 LKTLAQRLKGKEGRFRGNLSGKRVDYSARTVISPEPYLSINEVGVPIDVAKILTVPEKVT 358

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
           + NIE++R+ + NGP+++PGA  I  PDG    L Y K R  +A  L  G IV+RH+ DG
Sbjct: 359 EWNIEEMRKLVINGPNRWPGANYIITPDGRRIDLRYVKDRKSVAESLAPGYIVERHVRDG 418

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D+ +FNRQPSLHRMS+M H  +++P +T R + +VC PYNADFDGDEMN+H+PQTE+AR 
Sbjct: 419 DIAIFNRQPSLHRMSMMGHIIKVLPGKTFRLHLAVCPPYNADFDGDEMNLHIPQTEDARA 478

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           E  LL+ VQN++ TP+ G I++ + QD+++ ++++T K T   +    ++      G+ +
Sbjct: 479 ETRLLLKVQNHILTPRYGGIIIGAIQDYISGAYILTIKTTLLKKE--DVIDLLSAAGVVK 536

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
            +LP PAIL P  LWTGKQ+ S+ +    N     N+       S+  ++ E  E     
Sbjct: 537 -ELPEPAILSPKRLWTGKQIISMFLPEDFNYHGKANI-------SSGPLKCEDIE----- 583

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             C  D +V  R  +L+ G L K T+G   +D L   L ++YG    +  M+ + ++  R
Sbjct: 584 --CFWDSYVVVRKGKLLMGVLDKKTIGAEQQDSLLYWLAKEYGVEYVALFMDHVFRMFIR 641

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
            +   GF++ +DDV   +    +  ++I E +      +K+Y EGKL++ PG    ++LE
Sbjct: 642 VLEKRGFTLRLDDVAIDENTRKEILEIIKEAFSKVEELVKQYVEGKLEVVPGRSLEESLE 701

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
             I +IL   R+ AG+  +  L   N+  IM++ G++G+ +N++QM A +GQ +V G R 
Sbjct: 702 IKILEILAEARDKAGEVAVNRLDPFNNAFIMARTGARGNVLNLTQMSATLGQMTVRGERI 761

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
             G++ R +  + +    P A+GFV NSFYSGLS TE F H  GGREGLVDTAV+T+ +G
Sbjct: 762 WRGYMGRPISSYGQNDLGPLARGFVVNSFYSGLSPTEMFMHAAGGREGLVDTAVRTSQSG 821

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           YM RRLI AL+DL ++YD +VR++   I+QF+YG+DG DPA  +   G  +N +R++ +V
Sbjct: 822 YMQRRLINALQDLYVEYDGTVRDSTNSIIQFVYGEDGADPA--KAPHGNIVNVERIIERV 879


>gi|126465703|ref|YP_001040812.1| DNA-directed RNA polymerase subunit A' [Staphylothermus marinus F1]
 gi|126014526|gb|ABN69904.1| DNA-directed RNA polymerase, subunit A' [Staphylothermus marinus
           F1]
          Length = 886

 Score =  567 bits (1460), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 296/721 (41%), Positives = 438/721 (60%), Gaps = 25/721 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVL---YLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           LNP+ V    +++ D D  +L    +  RPE +++T + VPP ++RPS++++    +E+D
Sbjct: 180 LNPIEVRARLEKILDEDVRLLGGDPIDARPEWMVLTVLPVPPRSVRPSILLETGIRSEDD 239

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N  L++ +            WE LQ  V  Y +++  G+P +  +  + 
Sbjct: 240 LTHKLVDIIRINNRLREHIESGAPNAIIEDEWELLQYHVTTYFDNEAPGIPVARHRSGKV 299

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L G  QRLKGK+GRFRGNL GKRV+++ RTVISPDPN+ I EV +P  +A+ILT PERV+
Sbjct: 300 LKGLAQRLKGKEGRFRGNLRGKRVDFSARTVISPDPNISINEVGVPEVVAKILTVPERVT 359

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
             NIE++R+ + NGPDK+PGA  +  PDG    L    R  +A  L  G IV+RHL DGD
Sbjct: 360 PWNIEEMRRLVLNGPDKWPGANYVIRPDGRRISLKYVDRKAMAETLAPGFIVERHLRDGD 419

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +VLFNRQPSLHR+SIM H  R++P++T R N  VC PYNADFDGDEMN+HVPQ+EEAR E
Sbjct: 420 IVLFNRQPSLHRISIMAHVVRVLPYKTFRLNLLVCPPYNADFDGDEMNLHVPQSEEARAE 479

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
           A +LM V+ ++ TP+ G  ++   QD+++ +FL+T K T   R     +   +G    R 
Sbjct: 480 ARMLMLVEKHILTPRYGGPIIGGLQDYISGAFLLTSKSTLLTRED---VIELLGVAGYRG 536

Query: 442 DLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR-IE 500
            LP PAILKP + WTGKQL S+ +    N +              +  +  G   +R I+
Sbjct: 537 KLPEPAILKPKQYWTGKQLISLFLPDDFNYK--------------RPAKMAGATALRCID 582

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             CP+D  V  +N  L+ G L KA++G    + L   L+++YG       M+ + K+  R
Sbjct: 583 EDCPHDSIVIVKNGVLLEGVLDKASIGREEPESLIHWLVKEYGEDIARLFMDYVYKMFLR 642

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           +   +GF++G   +    E   +  ++I E  +     I++Y+ G+L+ +PG    +TLE
Sbjct: 643 FAEKYGFTMGYSHLLLPPEAKKRVLEIIEEKKKEVYELIEKYHRGELEPRPGRTIEETLE 702

Query: 621 AVITDILN-RIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
             I D+L+ ++ +D     +      N  +IM++ G++G+PIN++QM A +GQQ++ GRR
Sbjct: 703 DEIIDLLSKKLLDDVADTIIPYFKLSNPVIIMARTGARGNPINLTQMAALLGQQTIRGRR 762

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
              G++ R+LPHF      P A+GFVA+ F  GL+  E FFH   GREGL DTAV+T+ +
Sbjct: 763 ITRGYMHRTLPHFKPGDLGPEARGFVAHGFVDGLNPIEVFFHAAAGREGLTDTAVRTSQS 822

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 799
           GYM RRLI AL+DL ++YD +VR   G IVQF YG+DG+DP  M+   GE +  DR++ K
Sbjct: 823 GYMQRRLINALQDLRVEYDGTVRLPTGEIVQFAYGEDGVDP--MKSDHGEAVKIDRVIEK 880

Query: 800 V 800
           V
Sbjct: 881 V 881


>gi|347522775|ref|YP_004780345.1| DNA-directed RNA polymerase subunit A' [Pyrolobus fumarii 1A]
 gi|343459657|gb|AEM38093.1| DNA-directed RNA polymerase subunit A' [Pyrolobus fumarii 1A]
          Length = 882

 Score =  567 bits (1460), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 312/794 (39%), Positives = 455/794 (57%), Gaps = 52/794 (6%)

Query: 14  LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTK 73
           L K+++ +    A+K  +CP C                 H+   V E   ++        
Sbjct: 129 LAKALINEVKQRAAKTTECPHCKE---------------HNYKIVFEKPYKYY------- 166

Query: 74  ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPS 130
           E + A  V    LNP  V    +++ D D ++L L     RPE +++T + VPPI +RPS
Sbjct: 167 EDRPAGRVP---LNPREVRSRLEKIPDDDVKLLGLDPKEARPEWMVLTVLPVPPIHVRPS 223

Query: 131 VIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVR 190
           ++++     E+D+T +L  I++TN  L++ L            W  LQ  VA YI++++ 
Sbjct: 224 IVLETGIRAEDDLTHKLADIVRTNEKLRETLESGMPHSVIDEWWNLLQYHVATYIDNELP 283

Query: 191 GVPFSMQ---VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIP 247
            +P + Q   + RPL G  QRLKGK+GRFRGNLSGKRV ++ RTVISPDPN+ I EV +P
Sbjct: 284 KIPVARQRGGLGRPLKGLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPNISINEVGVP 343

Query: 248 IRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVEL 307
           I +A+ILT   RV+  NIE+LR+ + NGPDK+PGA  +  P G    L    R  +A  L
Sbjct: 344 IEIAKILTVAVRVTPWNIEELRKYVINGPDKWPGANYVIDPRGRKIDLRFADRKSIAEAL 403

Query: 308 KSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDE 367
           + G IV+RHL+DGD+VLFNRQPSLHRMSIM H  R++P +T R N  VC PYNADFDGDE
Sbjct: 404 QPGWIVERHLKDGDIVLFNRQPSLHRMSIMAHIVRVLPGKTFRLNLLVCPPYNADFDGDE 463

Query: 368 MNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYD-RAA 426
           MN+HVP+TEEA+ EA  LM VQ ++ TP+ G +++   QD+++ ++L+T K T       
Sbjct: 464 MNLHVPRTEEAQAEARELMLVQFHILTPRYGGVIIGGLQDYISGAYLLTSKATILTLDDV 523

Query: 427 FSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSN 486
             L+     +G    ++P P IL P +LWTGKQL S+ +      R    ++      S+
Sbjct: 524 VDLLAAAKYEG----EIPEPVILSPKKLWTGKQLVSLFLPKDFTFRGKAKISSGAFACSD 579

Query: 487 KLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHA 546
           +L              C ND ++  +N EL+ G   K  +G    + +   L ++YG   
Sbjct: 580 EL--------------CWNDSYIVIKNGELLEGVFDKKAIGAEQTESVLHQLTKEYGFDY 625

Query: 547 TSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGK 606
               M+ L K+  R+I  HGF++ ++DV    E  +   +++ E  +     I++Y EG+
Sbjct: 626 VRRLMDTLFKMFLRYIEKHGFTMTLEDVALPPEAKEHIREILKEAEKKVQELIEQYREGR 685

Query: 607 LQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQM 666
           L+  PG    +TLE  I + L   R    +     L   N+  IM++ G++G+ +NI+QM
Sbjct: 686 LEPVPGRTLEETLELKIIEALTDARRKIEQYVADVLDPFNNVFIMARTGARGNELNITQM 745

Query: 667 VACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGR 726
            A +GQQ+V G R   G+  R LPHF      PAA+GFV + FY GL+ TE FFH  GGR
Sbjct: 746 AAILGQQTVRGERISRGYRGRYLPHFKPGDLGPAARGFVYHGFYDGLTPTEVFFHAAGGR 805

Query: 727 EGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           EGLVDTAV+T+ +GYM RRLI AL+DL ++YD +VR   G +VQ  YG+DG+DP  M+  
Sbjct: 806 EGLVDTAVRTSQSGYMQRRLINALQDLRVEYDGTVRLPDGTLVQIKYGEDGVDP--MKSA 863

Query: 787 SGEPLNFDRLLMKV 800
            G+ +N DR++ +V
Sbjct: 864 HGKAVNVDRVIERV 877


>gi|66815437|ref|XP_641735.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
 gi|166202448|sp|P35084.2|RPB1_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb1; Short=RNA
            polymerase II subunit B1; AltName: Full=DNA-directed RNA
            polymerase III subunit A
 gi|60469758|gb|EAL67745.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
          Length = 1727

 Score =  566 bits (1459), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 362/1014 (35%), Positives = 550/1014 (54%), Gaps = 116/1014 (11%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L+   VL + KR+ D D   + ++    R + +I T + VPP  +RPS++MD S   E+
Sbjct: 206  VLSAERVLNILKRIKDEDSRAMGINPDWARADWMIATVLPVPPPPVRPSIMMDTSTRGED 265

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
            D+T +L  I++ N  LQ++      A       + LQ  VA Y+++++ G+P + Q + R
Sbjct: 266  DLTHKLADIVKANRELQRQEKNGAPAHIIAEATQFLQFHVATYVDNEIPGLPQAQQRSGR 325

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            PL    QRLKGK+GR RGNL GKRV+++ RTVI+ DPNL I +V +P  +A  LTYPE V
Sbjct: 326  PLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETV 385

Query: 261  SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
            +  NI+K+R+ I+NGP ++PGA+ I   DGT   L  +F  +++   L+ G  V+RH+ D
Sbjct: 386  TPFNIDKMRELIRNGPSEHPGAKYIIREDGTRFDL--RFVKKVSDTHLECGYKVERHIND 443

Query: 320  GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
            GDVV+FNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQT E R
Sbjct: 444  GDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLETR 503

Query: 380  TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDG 437
             E + +M V   + +P++   ++   QD L  S L T++D F ++      LM     DG
Sbjct: 504  AEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNILMWLPSWDG 563

Query: 438  MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
                 +P PAILKP +LWTGKQLFS++I P  N+  + +              T  D+E 
Sbjct: 564  ----KVPPPAILKPKQLWTGKQLFSLII-PDINLIRFTS--------------THNDKE- 603

Query: 498  RIETMCPN-----DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
                  PN     D  V     EL++G L K +LG  N   +  V++ ++G       ++
Sbjct: 604  ------PNECSAGDTRVIIERGELLAGILCKRSLGAANG-SIIHVVMNEHGHDTCRLFID 656

Query: 553  RLAKLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
            +   +   W+ N GF++GI D +     ++     + S   +V  + IK  N+ + + +P
Sbjct: 657  QTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNK-QFECQP 715

Query: 612  GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
            G    +T E  +  +LN+ R+ AG +   SL   N+   M   GSKGS INISQM+ACVG
Sbjct: 716  GKSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMMACVG 775

Query: 672  QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
            QQ+V G+R P GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+D
Sbjct: 776  QQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 835

Query: 732  TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL 791
            TAVKT++TGY+ RRL+KA+ED+SI+YD +VRN+ G ++QF YG+DG+D   +E +S + L
Sbjct: 836  TAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFVENQSIDSL 895

Query: 792  NFDRL----LMKVKATCPPAGQRYLSPQQVSEIVEKQLA------AYGKESCSEAFLN-- 839
              D      + + +   P  G  ++ P  +  +    L        + +     + L   
Sbjct: 896  RKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVRNDSLTRDTLEKEFERIKSDRSLLRNE 955

Query: 840  -------------SLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHK-----TSGI 881
                         +LR+     Q   +  I+ V D+        +E++  +     T+  
Sbjct: 956  IIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIATADT 1015

Query: 882  TEKQ-----------------LEVFIQTCFSRYRVK---RVEAGTAIGAIGA------QS 915
            TE                     + +++ F+  RV    R+     +   G       Q+
Sbjct: 1016 TEDDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIESKFLQA 1075

Query: 916  IGEPG---------------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPII 960
            +  PG               TQMTL TFH+AGV+S N+T GVPR+KEIIN AK++ TP +
Sbjct: 1076 LAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQVKTPSL 1135

Query: 961  TAELECN--DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            T  L+ +   + + A++VK ++E T L  V  + +I       + +I+ D E +
Sbjct: 1136 TIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAEFV 1189



 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 116/198 (58%), Gaps = 5/198 (2%)

Query: 1069 NVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGE---KKKYRLLVEGTGLQAVMGAEGID 1125
            N+L  ++++GIK +++V +   +K   KV ENG    ++++ L  +G  L  VM    +D
Sbjct: 1283 NMLSEMVLRGIKGIKKVFMRTDDKIP-KVTENGGFGVREEWILDTDGVSLLEVMSHPDVD 1341

Query: 1126 GCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLG 1185
              +T SN I E+ Q LGIEA R  ++ E+   +   G  ++ RH+ +LAD+MT+RG ++ 
Sbjct: 1342 HTRTTSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAILADVMTYRGHLMA 1401

Query: 1186 ITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            ITR GI +++   LM  SFE+T + L +A++    D ++GV+E II+G   PLGTG  ++
Sbjct: 1402 ITRHGINRVETGPLMRCSFEETVEILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEV 1461

Query: 1246 -RQRDAVPPMLKYGAPDP 1262
               +D +        P+P
Sbjct: 1462 FLNQDMIKNAHSIALPEP 1479


>gi|297527624|ref|YP_003669648.1| DNA-directed RNA polymerase subunit A' [Staphylothermus hellenicus
           DSM 12710]
 gi|297256540|gb|ADI32749.1| DNA-directed RNA polymerase subunit A' [Staphylothermus hellenicus
           DSM 12710]
          Length = 886

 Score =  564 bits (1453), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 293/721 (40%), Positives = 437/721 (60%), Gaps = 25/721 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVL---YLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           LNP+ V    +++ D D  +L    +  RPE +++T + VPP ++RPS++++    +E+D
Sbjct: 180 LNPIEVRARLEKILDEDVRLLGGDPVDARPEWMVLTVLPVPPRSVRPSILLETGIRSEDD 239

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N  L++ +            WE LQ  V  Y +++  G+P +  +  + 
Sbjct: 240 LTHKLVDIIRINNRLREHIESGAPNAIIEDEWELLQYHVTTYFDNEAPGIPVARHRSGKV 299

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L G  QRLKGK+GRFRGNL GKRV+++ RTVISPDPNL I EV +P  +A+ILT PERV+
Sbjct: 300 LKGLAQRLKGKEGRFRGNLRGKRVDFSARTVISPDPNLSINEVGVPEVVAKILTVPERVT 359

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
             NIE++R+ + NGPDK+PGA  +  PDG    L    R  +A  L  G IV+RHL DGD
Sbjct: 360 PWNIEEMRRLVLNGPDKWPGANYVIRPDGRRISLKYVDRKAMAETLAPGFIVERHLRDGD 419

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +VLFNRQPSLHR+SIM H  R++P++T R N  VC PYNADFDGDEMN+HVPQ+EEAR E
Sbjct: 420 IVLFNRQPSLHRISIMAHVVRVLPYKTFRLNLLVCPPYNADFDGDEMNLHVPQSEEARAE 479

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
           A +LM V+ ++ TP+ G  ++   QD+++ +FL+T K T   R     +   +G    R 
Sbjct: 480 ARMLMLVEKHILTPRYGGPIIGGLQDYISGAFLLTSKSTLLTRED---VIELLGVAGYRG 536

Query: 442 DLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR-IE 500
            LP PAILKP + WTGKQL S+ +    N +              +  +  G   +R I+
Sbjct: 537 KLPEPAILKPKQYWTGKQLISLFLPDDFNYK--------------RPAKIAGATALRCID 582

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             CP+D  V  +N  L+ G L KA++G    + L   L+++YG       M+ + K+  R
Sbjct: 583 EDCPHDSLVIVKNGVLLEGVLDKASIGREEPESLIHWLVKEYGEDIARLFMDYVYKMFLR 642

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           +   +GF++G   +    E   +  ++I E  +     I++Y  G+L+ +PG    +TLE
Sbjct: 643 FAEKYGFTMGYSHLLLPPEAKKRVLEVIEEKKKEVYELIEKYRRGELEPRPGRTIEETLE 702

Query: 621 AVITDILN-RIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
             I D+L+ ++ +D     +      N  +IM++ G++G+P+N++QM A +GQQ++ GRR
Sbjct: 703 DEIIDLLSKKLLDDVADTIIPYFKLSNPVIIMARTGARGNPVNLTQMAALLGQQTIRGRR 762

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
              G++ R+LPHF      P A+GFVA+ F  GL+  E FFH   GREGL DTAV+T+ +
Sbjct: 763 ITRGYMHRTLPHFKPGDLGPEARGFVAHGFVDGLNPIEVFFHAAAGREGLTDTAVRTSQS 822

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 799
           GYM RRLI AL+DL ++YD +VR   G I+QF YG+DG+DP  M+   GE +  +R++ K
Sbjct: 823 GYMQRRLINALQDLRVEYDGTVRLPTGEIIQFAYGEDGVDP--MKSDHGEAVKVERVIEK 880

Query: 800 V 800
           +
Sbjct: 881 I 881


>gi|296243131|ref|YP_003650618.1| DNA-directed RNA polymerase subunit A' [Thermosphaera aggregans DSM
           11486]
 gi|296095715|gb|ADG91666.1| DNA-directed RNA polymerase, subunit A' [Thermosphaera aggregans
           DSM 11486]
          Length = 881

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 308/802 (38%), Positives = 456/802 (56%), Gaps = 50/802 (6%)

Query: 5   KMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQE 64
           ++E L    L+K   +     AS  +KCP CG      K+    L   H   +  E+  E
Sbjct: 119 ELEELNLIYLLKRFYEYVKRKASAEMKCPHCG-----AKQYRYKLDKPHSFYEQKETGLE 173

Query: 65  FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL---YLSERPEKLIITNIA 121
                                L P ++    +++ D D  +L       RPE +++T + 
Sbjct: 174 K--------------------LWPTDIRVRLEKIPDEDVRLLGGNPEEARPEWMVLTVLP 213

Query: 122 VPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEV 181
           VPP  +RPSV+++    +E+D+T +L  II+ N  L++ +     +      WE LQ  +
Sbjct: 214 VPPRTVRPSVLLETGIRSEDDLTHKLVDIIRVNTRLKEHVESGAPSAIVEDEWELLQYHI 273

Query: 182 AQYINSDVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLK 240
             Y +++  G+P +  +  + L G  QRLKGK+GRFRGNL GKRV+++ RTV+SPDPNL 
Sbjct: 274 TTYFDNEAPGIPVAKHRSGKTLKGIAQRLKGKEGRFRGNLRGKRVDFSARTVVSPDPNLS 333

Query: 241 ITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFR 300
           I EV +P  +A+ILT PE+V+  NIE++R+ + NGPDK+PGA  I  PDG    L    R
Sbjct: 334 INEVGVPEMVAKILTIPEKVTPWNIEEMRKLVLNGPDKWPGANYIVRPDGRKISLKYVDR 393

Query: 301 NQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYN 360
              A  L  G IV+RHL DGD+VLFNRQPSLHR+S+M H  R++P++TLR N  VC PYN
Sbjct: 394 KAAAESLAPGYIVERHLLDGDIVLFNRQPSLHRISVMAHVVRVLPYKTLRLNVLVCPPYN 453

Query: 361 ADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDT 420
           ADFDGDEMN+HVPQ+EEAR EA LLM V+ ++ TP+ G  ++   QD+++ +F++T K T
Sbjct: 454 ADFDGDEMNLHVPQSEEARAEARLLMLVEKHILTPRYGGPIIGGLQDYISGAFVLTSKST 513

Query: 421 FYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVK 480
              +   + +   +G       +P PAILKP E WTGKQL SV +    N R    L   
Sbjct: 514 ILRKEEVAEL---LGVAGYHEAIPEPAILKPKEYWTGKQLVSVFLPKDLNYRRNSKLA-- 568

Query: 481 EKTYSNKLIRTEGDEEIR-IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLL 539
                       G   +R ++  CP+D  V  +   L+ G L KA++G    + L   L+
Sbjct: 569 ------------GASALRCVDEDCPHDSIVIIKKGVLLEGVLDKASIGREEPESLIHWLI 616

Query: 540 RDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKI 599
           ++YG        +R+ K+  R    +G ++G   +   +   +K  ++I E        I
Sbjct: 617 KEYGEDIGRLFKDRVYKMFLRASEKYGLTMGYSHLSLPELAREKIRQIILEKKNRVEELI 676

Query: 600 KEYNEGKLQLKPGCDAAQTLEAVITDILN-RIREDAGKACMGSLPWRNSPLIMSQCGSKG 658
           + Y +GKL  +PG    +TLE  I D+L+ R+ +D            N  +IM++ G++G
Sbjct: 677 RIYRQGKLTPRPGKTPEETLEDEIVDLLSKRLLDDVADTITPYFTLTNPVVIMARTGARG 736

Query: 659 SPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEF 718
           +P+N++QM A +GQQ+V G+R   G++ R LPHF +K   P A+GF+AN F +GL A E 
Sbjct: 737 NPVNLTQMAALLGQQTVRGKRLSRGYLYRPLPHFKQKDIGPEARGFIANGFVNGLEALEM 796

Query: 719 FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
           FFH   GREGL+DTAV+T+ +GYM RRLI AL+DL ++YD +VR   G +VQ +YG+DG+
Sbjct: 797 FFHAAAGREGLIDTAVRTSQSGYMQRRLINALQDLRVEYDGTVRTTSGELVQLVYGEDGV 856

Query: 779 DPANMEGKSGEPLNFDRLLMKV 800
           DP  M    G+ +N +R++ KV
Sbjct: 857 DP--MRSDHGKAVNVNRVIEKV 876


>gi|320101549|ref|YP_004177141.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus mucosus DSM
           2162]
 gi|319753901|gb|ADV65659.1| DNA-directed RNA polymerase, subunit A' [Desulfurococcus mucosus
           DSM 2162]
          Length = 885

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 312/792 (39%), Positives = 458/792 (57%), Gaps = 48/792 (6%)

Query: 14  LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTK 73
           L+K   +     AS A  CP CG     VK+    L   H   + TE             
Sbjct: 132 LIKRFHEYIRRKASAAEVCPHCG-----VKQYKVKLEKPHTFYEQTE------------- 173

Query: 74  ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL---YLSERPEKLIITNIAVPPIAIRPS 130
             K  V      L P  V    +++ D D ++L       RPE +++T + VPP ++RPS
Sbjct: 174 --KGLVK-----LTPSEVRGRLEKIPDDDVKLLGGDPRDARPEWMVLTVLPVPPRSVRPS 226

Query: 131 VIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVR 190
           V+++    +E+D+T +L  II+TN  L++ +     +      WE LQ  V  Y +++  
Sbjct: 227 VLLETGIRSEDDLTHKLVDIIRTNNRLREHVEGGAPSAIIEDEWELLQYHVTTYFDNEAP 286

Query: 191 GVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIR 249
           G+P +  +  + L G  QRLKGK+GRFR NL GKRV+++ RTV+SPDP+L I EV +P  
Sbjct: 287 GIPVAKHRSGKTLKGIAQRLKGKEGRFRNNLRGKRVDFSARTVVSPDPSLSINEVGVPED 346

Query: 250 MARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKS 309
           +ARILT PERV+  NIE++R+ + NGP+K+PGA  +  PDG    L    R   A  L+ 
Sbjct: 347 VARILTVPERVTPWNIEEMRRLVLNGPEKWPGANYVVRPDGRKISLKFVDRKAAAEALEP 406

Query: 310 GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMN 369
           G IV+RHL DGDVVLFNRQPSLHR+S+M H  R++P++T R N  VC PYNADFDGDEMN
Sbjct: 407 GFIVERHLMDGDVVLFNRQPSLHRISVMAHIVRVLPYKTFRLNLLVCPPYNADFDGDEMN 466

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +HVPQ+EEARTEA LLM V+ ++ TP+ G  ++   QD+++ ++++T K T   +     
Sbjct: 467 LHVPQSEEARTEARLLMLVERHILTPRYGGPIIGGLQDYISGAYILTSKTTLLSKDDVVD 526

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           +    G    + ++P PAILKP ELWTGKQL S+ +    N +         K  S   +
Sbjct: 527 LLAVTG---YKGEIPEPAILKPRELWTGKQLVSLFLPKDFNYK------RNSKIGSAAAL 577

Query: 490 RTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSG 549
           R        I+  CP+D  V  +N  L+ G L KA++G    + L   L+++YG      
Sbjct: 578 RC-------IDEDCPHDSMVIVKNGVLLEGVLDKASIGREEPESLVHWLIKEYGEDYGRM 630

Query: 550 CMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQL 609
            M+R+ K+  R    HGF++    +   +E  ++  ++I E        I +Y  G+LQ 
Sbjct: 631 FMDRVYKMFIRMSEKHGFTMSYSHLTLPEEARNRLREIILEKKREVEELISKYRRGELQA 690

Query: 610 KPGCDAAQTLEAVITDILN-RIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
           +PG    +TLE  I D L+ ++ +   +         N  ++M++ G++G+P+N++QM A
Sbjct: 691 RPGKTPEETLEDEIIDTLSKKLLDSVAEVITPYFTLVNPVVVMARTGARGNPVNLTQMAA 750

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            +GQQ+V G+R   G++ R+LPHF  +   P A+GF+AN F +GL+  E FFH   GREG
Sbjct: 751 LLGQQTVRGKRLTRGYLGRALPHFKPEDLGPEARGFIANGFVNGLNPVEMFFHAAAGREG 810

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSG 788
           L+DTAV+T+ +GYM RRLI AL+DL ++YD SVR   G IVQ LYG+DG+DP  M+   G
Sbjct: 811 LIDTAVRTSQSGYMQRRLINALQDLRVEYDGSVRLTTGEIVQLLYGEDGVDP--MKSDHG 868

Query: 789 EPLNFDRLLMKV 800
             +N DR++ KV
Sbjct: 869 RSVNVDRVVEKV 880


>gi|290984021|ref|XP_002674726.1| RNA polymerase II largest subunit [Naegleria gruberi]
 gi|284088318|gb|EFC41982.1| RNA polymerase II largest subunit [Naegleria gruberi]
          Length = 1650

 Score =  561 bits (1445), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 308/712 (43%), Positives = 443/712 (62%), Gaps = 25/712 (3%)

Query: 90  NVLFLFKRMTDTDCEVL---YLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITER 146
           +VL +FKR++  D E+L    ++  PE +I+T + VPP  +RPSV+   +   E+D+T +
Sbjct: 185 SVLQIFKRISTQDLELLGFDSINSNPEWMILTCLPVPPPHVRPSVMHGLNDKAEDDLTHK 244

Query: 147 LKRIIQTNASLQQELVEANSAFKSLAGW-ETLQVEVAQYINSDVRGVPFSM-QVARPLSG 204
           L  II++NA++Q+ L ++ S    L    + LQ   A Y+N+++ GVP S  +  R L  
Sbjct: 245 LADIIKSNATIQK-LSKSGSPQHYLDDMIKILQYHCATYMNNEISGVPMSTTKNGRMLKS 303

Query: 205 FVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHN 264
             QRLKGK+GR RGNL GKRV+++ RTVI+PDP ++I +V +P  +AR +T PE+V+  N
Sbjct: 304 LRQRLKGKEGRVRGNLMGKRVDFSARTVITPDPTIEIDQVGVPRTIARNMTVPEKVTPFN 363

Query: 265 IEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF---RNQLAVELKSGCIVDRHLEDGD 321
            E++ + + NGP+ YPGA+ +   DGT   L  KF   R+   V+L+ G  ++RHL+DGD
Sbjct: 364 FERMNELVMNGPETYPGAKYVLRDDGTRIDL--KFLSDRSTDQVQLQYGYTIERHLQDGD 421

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           VVLFNRQPSLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMN+H+PQ+ + +TE
Sbjct: 422 VVLFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVVTPYNADFDGDEMNLHLPQSLQTKTE 481

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
            L LM V  N+ TP++   L+A  QD L +    TR+D + ++    +M C M       
Sbjct: 482 LLELMMVPKNIITPQSHRPLIALVQDTLLAGSKCTRRDVYIEKDV--MMNCLMYLQDFNG 539

Query: 442 DLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET 501
            LP PAILKP  LWTGKQLFS+L+ P  +   Y  ++    T+ +++    GD +   + 
Sbjct: 540 QLPVPAILKPKPLWTGKQLFSLLL-PSID---YYGIS---STHDDEV----GDLKHLDDH 588

Query: 502 MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARW 561
           +   D  +   N EL++G L K +LG+ +   L  +++ D G       + +   +   W
Sbjct: 589 LPEFDTGIIISNGELLTGILDKKSLGSSH-GSLIHIIVNDKGTQEGKKFLGQCQHVLNYW 647

Query: 562 IGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEA 621
           +  HGFS+GI D     E   K  ++I+         +K+ + G +  +PG    Q+ E 
Sbjct: 648 LLQHGFSVGIGDTIADGETVKKIEEIINNAEREVKKIVKQAHNGLVTAEPGRTVEQSFER 707

Query: 622 VITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
            I   LN  REDAG     SL   NS   M   GSKGS +NISQ++ACVGQQ+V G+R P
Sbjct: 708 SINSTLNAAREDAGMHVKKSLKDSNSIKSMVTSGSKGSYLNISQIIACVGQQNVEGKRVP 767

Query: 682 NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
            GF +R+LPHF      P ++GFVANS+  GL+  EFFFHTMGGREGL+DTAVKTA+TGY
Sbjct: 768 FGFKNRTLPHFSTDDHGPESRGFVANSYLRGLTPQEFFFHTMGGREGLIDTAVKTAETGY 827

Query: 742 MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
           + RRL+KA+ED+ + YD +VR+A G I+QFLYG+DGMDP  +E +S E L+ 
Sbjct: 828 IQRRLVKAMEDVKVNYDGTVRDASGNIIQFLYGEDGMDPIKLESQSFEMLSL 879



 Score =  151 bits (382), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/407 (29%), Positives = 201/407 (49%), Gaps = 43/407 (10%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T + LE  +      +    V+ G  +G I AQSIGEP TQMTL TFH AGV+S N+T 
Sbjct: 1030 LTRESLEYLLGEVKYTFLNGLVQPGEMVGCIAAQSIGEPATQMTLNTFHNAGVSSKNVTL 1089

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENAARVVK--------GRIEKT--------L 984
            GVPR+KE+++ ++ I TP +T  L+ +++   A++VK        G I ++        +
Sbjct: 1090 GVPRLKELLDVSRNIKTPGLTIYLKNDNDCEIAKMVKEELEYSNLGSITRSTQIIYDPDI 1149

Query: 985  LGQVAKSIKIVMTSRLA------------SIVIALDMETIQDAHLCIN--ADIVKESIVQ 1030
               V +S +  +   L             S+   LD E + + HL ++  A+I+K+    
Sbjct: 1150 FNSVIESDQFFIREMLEEKTIDPNTFSPWSLRFVLDREMMSE-HLNMSQIANIIKQEFQN 1208

Query: 1031 TPKIKLKQQH-------IKVLDFRKLEIFPPVDKSKIHFELYSLK----NVLPMVIVKGI 1079
                     +       I++ +  K +     D+      +  LK    N+L  + +KG 
Sbjct: 1209 DISCFYSDDNSEELILIIRIRNSEKSKSETEDDEEDSSMIVEFLKRLESNMLSQLSLKGH 1268

Query: 1080 KTVERVVIAEKEKEKRKVKENGEKK-KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQ 1138
              +++V   + E  K    +  EKK ++ L  EG  L +VM    +D   T SN + EV+
Sbjct: 1269 NNLKKVFYRKDENIKFFSNKGVEKKTRWSLETEGCDLLSVMSHPQVDFRNTLSNDVIEVE 1328

Query: 1139 QTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSV 1198
            + LGIEA R  ++ E+ + ++  G  ++ RH+ +L D+MT  G +  +TR G+ + D   
Sbjct: 1329 KVLGIEACRNLLMKELRKVIEFDGSYVNYRHLAILCDVMTQGGVITAVTRHGLARSDNGP 1388

Query: 1199 LMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            LM  SFE+T + L  A+     D ++GVS  +++G   P+GTG   +
Sbjct: 1389 LMRCSFEQTVEVLVEAAQFSDVDTLKGVSANVMVGKLAPIGTGTFDL 1435


>gi|401409792|ref|XP_003884344.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
            caninum Liverpool]
 gi|325118762|emb|CBZ54313.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
            caninum Liverpool]
          Length = 1901

 Score =  561 bits (1445), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 357/1008 (35%), Positives = 555/1008 (55%), Gaps = 107/1008 (10%)

Query: 94   LFKRMTDTDCEVL-YLSER--PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
            + +R+++ D +++ +  ER  P   I++ + +PP+A+RPSV   GS  +E+D+T +L  I
Sbjct: 219  VLRRISEDDLKMMGFDPERAHPASFILSTLPIPPLAVRPSVQY-GSARSEDDLTLKLVDI 277

Query: 151  IQTNASLQQELVEANSA-FKSLAGWETLQVEVAQYINSDVRGVPF-SMQVARPLSGFVQR 208
            ++TN SL+++     SA  + +     LQ  V    ++D+ G+P  + +  +P+     R
Sbjct: 278  VKTNLSLKRQGDSVPSAVLQEMV--MLLQYHVTTLFDNDIPGMPVATTRGKKPIKSIRAR 335

Query: 209  LKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKL 268
            LKGK+GR RGNL GKRV+++ RTVI+ DP L I  V +P  +A  LTYPE V+  NI +L
Sbjct: 336  LKGKEGRLRGNLMGKRVDFSARTVITGDPMLPIDTVGVPKSIAMTLTYPEFVTPLNIGQL 395

Query: 269  RQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQ 328
            RQ ++ GP  +PGA+ +   DG+ R      +    V L+ G  V+RH+ DGD VLFNRQ
Sbjct: 396  RQLVKTGPFDWPGAKYVIRDDGS-RFDLRHAKKGGEVVLEVGYRVERHMRDGDFVLFNRQ 454

Query: 329  PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGV 388
            PSLH+MSIM H+ +I+P+ T R N SV +PYNADFDGDEMN+H+ Q+EE R E   LM V
Sbjct: 455  PSLHKMSIMGHQVKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSEETRAEIKHLMKV 514

Query: 389  QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLPTP 446
               + +P+  + ++   QD L +    TR+DTF  +      L+      G+    +P P
Sbjct: 515  PKQIVSPQGNKPVMGIVQDSLLAVSKFTRRDTFLTKPMVYNILLQIPYWSGV----VPPP 570

Query: 447  AILKPVELWTGKQLFSVLI-----------RPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
            AI++PV LWTGKQLFS+L+           +   NM+  V   + ++   N  I +E DE
Sbjct: 571  AIVRPVPLWTGKQLFSLLLFFDSSVSGGNTKTRINMQRDVGAGLVDRKKENLFI-SERDE 629

Query: 496  EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
             + I            R  EL++G++ K  +G+ +   L  +L  + G   T   ++ L 
Sbjct: 630  RVII------------RQGELLAGKICKKIVGSASG-SLIHLLWLEAGPERTKDFLSTLQ 676

Query: 556  KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
            KL+  W+ + GF++G  D+   +E ++K   ++ +  +  +  I+  + G+L+ +PG   
Sbjct: 677  KLTNYWLLHQGFTVGCKDIIANEETNEKVRDILDQAKKEVDKLIRLAHRGRLESQPGKSL 736

Query: 616  AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
             ++ EA +   LN  RE +GK    SL   N+ + M   GSKGS INISQ++ACVGQQ+V
Sbjct: 737  RESFEARVNKELNSARERSGKVAAESLDESNNIMAMVLAGSKGSTINISQIMACVGQQNV 796

Query: 676  GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
             G+R P GF +RSLPHF +    P ++GFV NS+ SGL   E FFH MGGREG++DTA K
Sbjct: 797  EGKRIPFGFNERSLPHFHKFDYSPQSRGFVENSYLSGLEPHELFFHAMGGREGIIDTACK 856

Query: 736  TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFD- 794
            T++TGY+ RRL+KA+ED+ + YD +VRN+   ++QFLYG+DGM    +E ++ E +  D 
Sbjct: 857  TSETGYIQRRLMKAMEDVMVYYDRTVRNSICEVLQFLYGEDGMSGEYVEDQTVELMTLDN 916

Query: 795  ---RLLMKVKATCPPAGQRYLSPQQVSEI---------VEKQLAAYGKES---CSEAF-- 837
               + L +        G+ +LS +  +EI         +E++  A  ++    C   F  
Sbjct: 917  EKLKRLYRHDVDQESYGKGWLSDEMRNEILTDFELQQPLEEEFEAIREDKNRLCRHIFKD 976

Query: 838  --------LNSLR-------KFFEGQQDKLDKKIKFVEDIG--WDDKSQILEEVTHKTSG 880
                    +N LR       +F  G   +    I+    +    +DK  ++++ T+  + 
Sbjct: 977  GETKQHIPINILRLLEFAKAQFPSGDNSRKQSPIEIARKVNELLNDKLVVVKQTTNADAI 1036

Query: 881  ITEKQ------LEVFIQTCFSRYRV---KRV---------------------EAGTAIGA 910
              E Q      ++  ++T  +  R+   +RV                      AG  +GA
Sbjct: 1037 SAEVQENATIFMKAHLRTVLNSRRLLERERVGPKALQWLLGEVERQFHRALAHAGECVGA 1096

Query: 911  IGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECND 968
            I AQSIGEP TQMTL TFHFAGV S N+T GVPR+KE+IN AK++ TP +T  L  E   
Sbjct: 1097 IAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKQVKTPSLTVYLQDEIAM 1156

Query: 969  NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAH 1016
            ++  A+ V+  +E T L +V    +++        +I  D + + D +
Sbjct: 1157 DQERAKDVQTHLEHTTLDRVTVVSQVIYDPDPTDTIIPQDRQWVHDYY 1204



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 97/174 (55%), Gaps = 2/174 (1%)

Query: 1074 VIVKGIKTVERVVIAEKEKEKRKVKENGEKK--KYRLLVEGTGLQAVMGAEGIDGCKTKS 1131
            + ++GI  + +V + E+ +    V+    ++   + L  +G  L+ V+    +D  +T S
Sbjct: 1307 ITLRGITNISKVYMREEARTVYNVQLGKFERTNNWVLDTDGCNLEDVLPIPMVDHARTTS 1366

Query: 1132 NHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGI 1191
            N + E+   LGIEA R  ++ E+   +   G  ++ RH+ +L D MT +G ++ ITR GI
Sbjct: 1367 NDMTEIFHVLGIEAVRRALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGI 1426

Query: 1192 QKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             ++DK  LM  SFE+T + L  A+V    D ++GV+E I+MG   PLGTG   +
Sbjct: 1427 NRIDKGPLMKCSFEETVEILMEAAVFAEADHLKGVTENIMMGQLCPLGTGYFDV 1480


>gi|330833901|ref|YP_004408629.1| DNA-directed RNA polymerase subunit A' [Metallosphaera cuprina
           Ar-4]
 gi|329566040|gb|AEB94145.1| DNA-directed RNA polymerase subunit A' [Metallosphaera cuprina
           Ar-4]
          Length = 886

 Score =  560 bits (1444), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 300/720 (41%), Positives = 432/720 (60%), Gaps = 24/720 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P+++    + + D+D E+L       RPE +I+T + VPPI IRPS++++     E+D
Sbjct: 181 LTPLDIRERLENIPDSDVELLGYDPTVSRPEWIILTVLPVPPITIRPSIMIESGIRAEDD 240

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  I++ N  L++ +            W+ LQ  VA Y ++++ G+P S  +  RP
Sbjct: 241 LTHKLVDIVRINERLKESIDAGAPQLIVEDLWDLLQYHVATYFDNEIPGLPTSKHRSGRP 300

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRGNLSGKRV+++ RTVISPDPN+ I EV +P  +A ILT PE+V+
Sbjct: 301 LRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNISIDEVGVPYDVAMILTVPEKVT 360

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
             NIE++R+ + NGPDK+PGA  +   DG    L Y K R +LA  L    IV+RHL DG
Sbjct: 361 KWNIERMREYVINGPDKWPGANYVVRSDGRRIDLRYVKDRKELAATLAPNFIVERHLVDG 420

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D+V+FNRQPSLHR+S+M HR R++P RT R N  VC PYNADFDGDEMN+HVPQ+EEA  
Sbjct: 421 DIVIFNRQPSLHRISMMGHRVRVLPGRTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIA 480

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           E   LM V  N+ TP+ G  ++ S QD+++ ++L+T K T         +   +G     
Sbjct: 481 ETKELMTVHRNILTPRYGGPIIGSAQDYISGAYLLTVKTTLLSEDEVQTI---LGVADIN 537

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
            DL  PAIL P  L+TGKQ+ S  +    N     N++          +R+  DE+    
Sbjct: 538 KDLGEPAILAPKRLYTGKQIVSHFLPEEFNFHGPANISSG--------VRSCKDED---- 585

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             CP+D +V  +  +L+ G   K  LGN   + +   L+R+Y        M+ L K+  R
Sbjct: 586 --CPHDSYVVIKRGKLLEGVFDKKALGNQQAESILHWLVREYDEDYVLWLMDNLFKVFLR 643

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           +I  HG ++ + DV   ++ + K  +   E  E  N  I  Y +G+L++ PG    ++LE
Sbjct: 644 YIELHGLTMTLSDVTIPEDATKKISEKAREARERVNDLIARYKKGELEVIPGRTLEESLE 703

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
           + I D L+++R +AG+     L   N+  IM++ G++GS +NI+QM A +GQQSV G R 
Sbjct: 704 SYILDTLDKLRNEAGEIATMHLDPFNNAYIMARTGARGSVLNITQMAAMLGQQSVRGERI 763

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
             G+  R+LPHF      P A+GF+ +SF SGL+  E FFH  GGREGLVDTAV+T+ +G
Sbjct: 764 KRGYSTRTLPHFKPNDISPEARGFIYSSFRSGLNPIETFFHAAGGREGLVDTAVRTSQSG 823

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           YM RRLI AL DL I+YD +VR   G ++Q LYG DG+ P  M    G+ ++ DR+L +V
Sbjct: 824 YMQRRLINALSDLRIEYDGTVRTLYGEVIQTLYGGDGVHP--MRSAHGKTIDVDRILERV 881


>gi|389860841|ref|YP_006363081.1| DNA-directed RNA polymerase subunit A' [Thermogladius
           cellulolyticus 1633]
 gi|388525745|gb|AFK50943.1| DNA-directed RNA polymerase subunit A' [Thermogladius
           cellulolyticus 1633]
          Length = 880

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 291/720 (40%), Positives = 433/720 (60%), Gaps = 23/720 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVL---YLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  V    +++ D D  +L       RPE +++T + VPP A+RPS++++    +E+D
Sbjct: 174 LTPAEVRSRLEKIPDDDVRLLGGDPTDARPEWMVLTVLPVPPRAVRPSILLETGIRSEDD 233

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N  L++ +            WE LQ  V  Y +++  G+P +  +  + 
Sbjct: 234 LTHKLVDIIRVNNRLREHVETGAPNALIEDEWELLQYHVTTYFDNEAPGIPQAKHRTGKT 293

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L G  QRLKGK+GRFRGNL GKRV+++ RTVISPDPNL I EV +P  +A++LT PE+V+
Sbjct: 294 LKGIAQRLKGKEGRFRGNLRGKRVDFSARTVISPDPNLSINEVGVPEVVAKVLTVPEKVT 353

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
             NIE++R+ + NGPDK+PGA  +  PDG    L    R  +A  L  G IV+RHL DGD
Sbjct: 354 PWNIEEMRKLVLNGPDKWPGANYVIRPDGRKISLKFVDRKAVAESLAPGFIVERHLLDGD 413

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           VVLFNRQPSLHR+S+M H  R++P++T R N  VC PYNADFDGDEMN+HVPQ+EEAR E
Sbjct: 414 VVLFNRQPSLHRISVMAHIVRVLPYKTFRLNLLVCPPYNADFDGDEMNLHVPQSEEARAE 473

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
           A +LM V+ ++ TP+ G  ++   QD+++ +FL+T K T   +A    +    G    + 
Sbjct: 474 ARILMLVEKHILTPRYGGPIIGGLQDYISGAFLLTNKSTILTKAEVIDLLSVAG---YKG 530

Query: 442 DLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET 501
            LP PAI +PVE WTGKQ+ SV +    N +         K  S   +R        I+ 
Sbjct: 531 SLPEPAIQRPVEYWTGKQIVSVFLPGDFNYK------RNAKIASASALRC-------IDE 577

Query: 502 MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARW 561
            CP+D  V  +  +L+ G + KA++G    + L   L++++G       M+ + ++  R+
Sbjct: 578 DCPHDSLVIIKKGQLLEGVIDKASIGREEPESLVHWLIKEHGEDVARKFMDNVYRMFIRF 637

Query: 562 IGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEA 621
              +GF++    +    E  ++   +I++     +  I+EY  G+LQ KPG    +TLE 
Sbjct: 638 SEMYGFTMSYYHLLIPPEARERIRSIIADKKREVSRLIEEYRAGRLQPKPGKTVEETLED 697

Query: 622 VITDILN-RIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
            + D+L+ R+ ++            N  ++M++ GS+G+P+N++QM A +GQQ+V G+R 
Sbjct: 698 EVIDLLSKRLLDEVADVITPYFTLANPVIVMARTGSRGNPVNLTQMAALLGQQTVRGKRL 757

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
             G++DRSLPHF      P A+GFVA  F +GLS  E FFH  GGREGL+DTAV+T+ +G
Sbjct: 758 TRGYMDRSLPHFKPGDLGPEARGFVARGFVNGLSPIEMFFHAAGGREGLIDTAVRTSQSG 817

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           YM RRLI AL+D+ +  D SVR   G ++QF YG+DG+DP  M    G+ +N DR++ KV
Sbjct: 818 YMQRRLINALQDVRVDIDGSVRTTNGEVIQFKYGEDGVDP--MRSDHGKAVNVDRVIQKV 875


>gi|77176709|gb|ABA64469.1| DNA-dependent RNA polymerase II largest subunit [Glaucocystis
            nostochinearum]
          Length = 1852

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 361/999 (36%), Positives = 537/999 (53%), Gaps = 94/999 (9%)

Query: 85   ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            +L+   V  +FKR++D DC  + L     RP+ +I+T + VPP  +RPS++MD +   E+
Sbjct: 207  VLSAEKVHQIFKRISDEDCRSMGLRPEWARPDWMIVTILPVPPPPVRPSIMMDSTARGED 266

Query: 142  DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VAR 200
            D+T +L  I++ N +L+++ +    A       + LQ  VA Y+++++ G P + Q   R
Sbjct: 267  DLTHKLADIVKANMNLKRQEMNGAPAHIISEFQQLLQFHVATYVDNEIPGQPQACQRSGR 326

Query: 201  PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            PL    QRLKGK+GR RGNL GKRV+++ RTVI+ DPNL I +V  P  +A  LTYPE V
Sbjct: 327  PLKSISQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLGIDQVGCPRSIALNLTYPEIV 386

Query: 261  SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
            +  N+ ++ + I+NGP+++PGAR I   DG  R+     +    + L+ G  V+RH++DG
Sbjct: 387  TKFNMPRMYELIRNGPNEHPGARYIIRDDG-QRLDLRYIKKASDLHLEPGYRVERHIQDG 445

Query: 321  DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
            D VLFNRQPSLH+MSIM HR ++MP+ T R N SV  PYNADFDGDEMNMHV QT E R 
Sbjct: 446  DYVLFNRQPSLHKMSIMGHRVKVMPYSTFRLNLSVTTPYNADFDGDEMNMHVAQTFETRA 505

Query: 381  EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
            E   +  V   + +P++   ++   QD L +S  +T +DTF ++     +  ++ D  D 
Sbjct: 506  EVQEICLVPRQIISPQSNRPVMGIVQDTLMASQKMTIRDTFIEKDVVMNILMHL-DSFDG 564

Query: 441  VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
              LP PAILKP  LWTGKQLF++ + P+ N+               +      D E+   
Sbjct: 565  -RLPIPAILKPRPLWTGKQLFTMFL-PNVNLI--------------RFCSQHPDNEV--S 606

Query: 501  TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             + P D  V     EL++G + K TLG  +   L  V+  ++G        +   K+   
Sbjct: 607  DISPGDTKVIIEQGELLAGIVCKRTLGTSSG-SLIHVIWNEHGHDIARVFFSMTQKVINN 665

Query: 561  WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
            W+ N GFSIGI D    +   +   + I          I +  + +L+ +PG    ++ E
Sbjct: 666  WLINVGFSIGIGDTIADEATMETINQHIGTAKTRVQQLILDCQQNRLECQPGRTLLESFE 725

Query: 621  AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
              +   LN  R++AG +   SL   N+   M   GSKGS INISQM+ACVGQQ+V G+R 
Sbjct: 726  NRVNKELNTARDNAGASAQKSLKPSNNVKAMVTSGSKGSFINISQMIACVGQQNVEGKRI 785

Query: 681  PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
            P GF DR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++TG
Sbjct: 786  PFGFRDRTLPHFHKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 845

Query: 741  YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF-DRLLMK 799
            Y+ RRLIKA+ED+ +QYD+++RN+ G I+QF+YG+DGMD   +E +  E +   D+   K
Sbjct: 846  YIQRRLIKAMEDVMVQYDSTLRNSIGDIIQFVYGEDGMDAVYVENQKLESMKMGDKEFGK 905

Query: 800  VKATCPPA---GQRYLSPQQVSEIVEKQLAAYGKESCSEAFLN----------------- 839
            V    P A   G  ++    V +I +        E+  +  +N                 
Sbjct: 906  VYKFEPDARNFGDGFMDADIVQKIRDSADDRILLEAEFKQLMNDRTALRESIPTDENTWP 965

Query: 840  ---SLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGI----------TEKQ- 885
               +L++     Q      ++   D+   D   I++ V   T  +           E Q 
Sbjct: 966  LPVNLKRLIWNAQKIFHIDVRKPSDL---DPVDIIKGVNLLTKQLVVIPGEDPLSVEAQA 1022

Query: 886  -----LEVFIQTC------FSRYRVKRVEAGTAIGAIGA---QSIGEPG----------- 920
                  ++ +++C       + YR+        +G I +   Q+I  PG           
Sbjct: 1023 NATMLFQILVRSCLASKRVLTEYRLTSHAFEWLLGEIESRFLQAIANPGEMVGAIAAQSI 1082

Query: 921  ----TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELE--CNDNENAAR 974
                TQMTL TFH+AGV+S N+T GVPR+KEIIN AK++ TP +   L+  C  +   A+
Sbjct: 1083 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAKKVKTPSLVVYLKEYCRRDSEKAK 1142

Query: 975  VVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
             V+ ++E T L  V  + +I     L + VI  D E +Q
Sbjct: 1143 AVQCQLEFTTLRHVTAATEIYYDPDLQNTVIEEDREFVQ 1181



 Score =  106 bits (265), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 98/182 (53%), Gaps = 1/182 (0%)

Query: 1069 NVLPMVIVKGIKTVERVVIAEKEKEKRKVKENG-EKKKYRLLVEGTGLQAVMGAEGIDGC 1127
            ++L  + ++GI  + +V + E +K           +K++ L  EG  L  VM  + +D  
Sbjct: 1279 DMLTEMALRGIAQIRKVFMREAKKITFDADHKYMHEKEWVLDTEGCNLLEVMSCQDVDHT 1338

Query: 1128 KTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGIT 1187
            +T SN I E+ Q LGIEA R   + E+ + +   G  ++ RH+  LAD+MT+RG ++ IT
Sbjct: 1339 RTTSNDIVEIIQVLGIEAVRQAALKELRDVISFDGSYVNYRHLATLADVMTYRGHLMSIT 1398

Query: 1188 RFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQ 1247
            R GI ++    +M  SFE+T + L +A+V    D    V+E I++G    LGTG   +  
Sbjct: 1399 RHGINRVPTGAMMRCSFEETVEILMDAAVYAETDHCRSVTENIMLGQLCQLGTGSFDLFL 1458

Query: 1248 RD 1249
             D
Sbjct: 1459 ND 1460


>gi|12642612|gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Glaucosphaera
           vacuolata]
          Length = 1746

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 312/737 (42%), Positives = 448/737 (60%), Gaps = 41/737 (5%)

Query: 60  ESLQ---EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPE 113
           E LQ   EF  +   T E K  V+          VL +FK ++D D E++ LS    RPE
Sbjct: 166 EGLQFRAEFKGSADDTMEKKQIVSAE-------KVLSIFKHISDDDIEIMGLSPQHSRPE 218

Query: 114 KLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAG 173
             I+T   VPP  IRPSV+MD S   E+D+T +L  I++ N +L++       A +    
Sbjct: 219 WFILTLFPVPPPHIRPSVMMDASMRGEDDLTYKLGDIVRNNNALREMERTGAPAHRLNEQ 278

Query: 174 WETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTV 232
              LQ  +   +N+D+ G+P + Q + RP+    QRLKGK+GR RGNL GKRV+++GRTV
Sbjct: 279 IHVLQAHIITIMNNDLPGMPRAHQKSGRPIKSISQRLKGKEGRVRGNLMGKRVDFSGRTV 338

Query: 233 ISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA 292
           ISPDPNL++ +V +P  +A  LTYPE V+  N+EK+R+ + NGP++YPGA+ I   DG+ 
Sbjct: 339 ISPDPNLRLDQVGVPQTIAMNLTYPEVVTPFNVEKMRRLVMNGPNEYPGAKYIERLDGS- 397

Query: 293 RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 352
           +V     +N+  + L +G  V RHL DGD V+FNRQPSLH+MSIM HR ++M + + R N
Sbjct: 398 KVNLAFVKNRSDIHLNNGEKVIRHLLDGDYVIFNRQPSLHKMSIMGHRVKVMRYSSFRLN 457

Query: 353 ESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSS 412
            S  +PYNADFDGDEMN+HVPQ+ +AR E + LM V   + +P+  + ++   QD L  +
Sbjct: 458 LSCTSPYNADFDGDEMNLHVPQSPQARAEVMQLMMVPRCIVSPQGNKPVMGIVQDTLVGT 517

Query: 413 FLITRKDTFYDR-AAFSLMCCYMG-DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHAN 470
            L T++DTF ++    +L+  + G DG+    +P PAILKP +LWTGKQLFS+++ P  N
Sbjct: 518 MLFTQRDTFMEKDLVMNLLLHFRGWDGV----IPPPAILKPRQLWTGKQLFSMIL-PDVN 572

Query: 471 MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGN 530
           +  + N      T+ +  I   GD ++ I               EL+SG + K T+G+  
Sbjct: 573 LVRFSN------THDDDDIENAGDTKVLIS------------RGELLSGTVDKRTVGSA- 613

Query: 531 KDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISE 590
            + L  V  +++G       ++ +  L   W+   GFSIGI D    ++      ++I++
Sbjct: 614 ANSLVHVTWKEHGPEGACDLISNIQTLVNHWLLQRGFSIGIGDTIADEQTRFNVIEIINK 673

Query: 591 NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLI 650
             E     +++  EG+LQL PG    ++ E  +  +LN  R+ +G     SL   N+   
Sbjct: 674 AKEEVKRLVRKAQEGELQLLPGKTMMESFETGVNKVLNGARDKSGSDAQKSLLKTNNIKR 733

Query: 651 MSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFY 710
           M   GSKGS INISQ+ ACVGQQ+V G+R   GF  R+LPHF      P ++GFV NS+ 
Sbjct: 734 MVNAGSKGSFINISQICACVGQQNVEGKRISYGFRRRTLPHFVLDDLGPESRGFVENSYL 793

Query: 711 SGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQ 770
            GL+ATEFFFH MGGREGL+DTAVKT++TGY+ RRLIKALED+ ++YD +VRN+ G IVQ
Sbjct: 794 RGLTATEFFFHAMGGREGLIDTAVKTSETGYIQRRLIKALEDVMVKYDGTVRNSTGLIVQ 853

Query: 771 FLYGDDGMDPANMEGKS 787
           FLYG+DGMD A +E ++
Sbjct: 854 FLYGEDGMDGAMVEDQN 870



 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 130/401 (32%), Positives = 195/401 (48%), Gaps = 58/401 (14%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+   +   G  IGA+  QSIGEP TQMTL TFHFAGV++ N+T GVPR+KEIIN AK 
Sbjct: 1069 NRFLHAKCPPGEMIGAVAPQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKH 1128

Query: 955  ISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L  E   +   A+ V+  ++ T L  V +S +I         VI  D E +
Sbjct: 1129 CKTPSLTVYLRGEAARDAERAKQVQAELQHTTLNHVTQSTEIYYDPNPQDTVIEADQELV 1188

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLP 1072
            +  +     D    S   +P +       +++  RKL +     K+KIH +L    NV+ 
Sbjct: 1189 RSYYEL--PDDENSSANLSPWLLRLNLSKEMMTDRKLSMNHV--KNKIHHDLGGDVNVMA 1244

Query: 1073 MVIVKGIKTVERVVIAEKEKEK-------------------RKVKEN------------- 1100
                     +   + A+KE EK                   RKV+ +             
Sbjct: 1245 SEDNDANLVLRIRIAAQKEPEKMAEGEEHAQEEEEDECLFLRKVEGSLLSEMNLGGVPDI 1304

Query: 1101 --------------------GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQT 1140
                                  +K++ L  +GT L AVM  + +D  +T SN + E+  T
Sbjct: 1305 KKVYMREADRIVPDPRTGGLSVEKEWVLDTDGTNLLAVMSHKDVDYTRTVSNDVVEMFVT 1364

Query: 1141 LGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLM 1200
            LGIE  R  +++EI   +   G  ++ RH+ +LAD+MT RG ++ ITR GI +++   LM
Sbjct: 1365 LGIEGVRAALLNEIRGVISFDGAYVNYRHLAILADIMTCRGHIMSITRHGINRVETGALM 1424

Query: 1201 LASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
              SFE+TAD L  A++ G  D ++GV+E I++G   P+GTG
Sbjct: 1425 RCSFEETADILLEAAMYGEVDDMKGVAENIMLGQMAPVGTG 1465


>gi|120561233|gb|ABM27002.1| RNA polymerase II largest subunit, partial [Entophlyctis
           confervae-glomeratae]
          Length = 1013

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 309/697 (44%), Positives = 424/697 (60%), Gaps = 27/697 (3%)

Query: 94  LFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
           LF++++D DC  + L+    RPE +II+ + VPP+A+RP+V MDG  +N++D+T +L+ I
Sbjct: 137 LFQKISDADCLGMGLNPQWARPEWMIISVLPVPPMAVRPAVSMDGVATNQDDLTHKLRDI 196

Query: 151 IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRL 209
           + TN  L+    +   A         LQ  VA Y+++D+ G+P ++Q + RPL     RL
Sbjct: 197 VLTNQQLRTHETDGAPAHIITEFENLLQYHVATYMDNDIAGIPAALQKSGRPLKSIRARL 256

Query: 210 KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
           KGK+GR RGNL GKRV+++ RTVI+ DP+L I +V +P  +AR LT+PE V+ +NI K++
Sbjct: 257 KGKEGRLRGNLMGKRVDFSARTVITGDPHLSIDQVGVPRSIARNLTFPETVTPYNIHKMQ 316

Query: 270 QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQP 329
           Q +QNGP ++PGA+ +   DG  R+     R    + L+ G  V+RHL D D+V+FNRQP
Sbjct: 317 QMVQNGPTEHPGAKYVIKDDGQ-RIDLRYNRRGGDIHLQPGYRVERHLMDDDIVIFNRQP 375

Query: 330 SLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQ 389
           SLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+ E + E + L  V 
Sbjct: 376 SLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETKAELMELCMVP 435

Query: 390 NNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DRAAFSLMCCYMGDGMDRVDLPTPA 447
             + +P+    ++   QD L      T++DTF   D     LM     DG     +P PA
Sbjct: 436 KQIVSPQKNAPIMGIVQDTLCGIRKFTKRDTFLRQDLVMNLLMWVPDWDGT----IPQPA 491

Query: 448 ILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDG 507
           I+KPV LWTGKQ+ S LI P       +N+T     Y    ++T  + E  I      D 
Sbjct: 492 IIKPVPLWTGKQIVS-LILP-----AKINVTGMHTAY----VQTPSNPEPDIP-----DC 536

Query: 508 FVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGF 567
            V   N EL+SG L K+ +G+ +  G+  V + +YG        N    +   W+  HGF
Sbjct: 537 KVLIENGELLSGILDKSMVGSSS-GGVIHVAMNEYGPDVAKAFFNGCQTVVNYWLLQHGF 595

Query: 568 SIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDIL 627
           SIGI D    KE + +    I+++   C+  IK    G L+  PG    +T E+ IT  L
Sbjct: 596 SIGIGDTIADKETTQQINDAIAKSKAKCSEIIKAAQNGTLEGMPGLSVRETFESYITKEL 655

Query: 628 NRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDR 687
           N  R+ AGK+   +L   N+   M   GSKGS IN++QM ACVGQQ+V G R P GF  R
Sbjct: 656 NTARDGAGKSAQMTLKEFNNVKQMVVAGSKGSYINVAQMSACVGQQNVEGSRIPFGFKYR 715

Query: 688 SLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLI 747
           SLPHF +    P A+GFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+TGY+ RRL+
Sbjct: 716 SLPHFTKDDHTPEARGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 775

Query: 748 KALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           KALEDL  QYD +VRNA G IVQF YG+DGMD A +E
Sbjct: 776 KALEDLMAQYDGTVRNALGEIVQFCYGEDGMDGAKVE 812


>gi|221486415|gb|EEE24676.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
            gondii GT1]
 gi|221508191|gb|EEE33778.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
            gondii VEG]
          Length = 1892

 Score =  557 bits (1436), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 356/1008 (35%), Positives = 553/1008 (54%), Gaps = 107/1008 (10%)

Query: 94   LFKRMTDTDCEVL-YLSER--PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
            + +R+++ D +++ +  ER  P   I++ + +PP+A+RPSV   GS  +E+D+T +L  I
Sbjct: 219  VLRRISEEDLKMMGFDPERAHPASFILSTLPIPPLAVRPSVQY-GSARSEDDLTLKLVDI 277

Query: 151  IQTNASLQQELVEANSA-FKSLAGWETLQVEVAQYINSDVRGVPF-SMQVARPLSGFVQR 208
            ++TN SL+++     SA  + +     LQ  V    ++D+ G+P  + +  +P+     R
Sbjct: 278  VKTNLSLKRQGDSVPSAVLQEMV--MLLQYHVTTLFDNDIPGMPVATTRGKKPIKSIRAR 335

Query: 209  LKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKL 268
            LKGK+GR RGNL GKRV+++ RTVI+ DP L I  V +P  +A  LTYPE V+  NI +L
Sbjct: 336  LKGKEGRLRGNLMGKRVDFSARTVITGDPMLPIDTVGVPKSIAMTLTYPEFVTPLNIGQL 395

Query: 269  RQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQ 328
            RQ ++ GP  +PGA+ +   DG+ R      +    V L+ G  V+RH+ DGD VLFNRQ
Sbjct: 396  RQLVKTGPFDWPGAKYVIRDDGS-RFDLRHAKKGGEVVLEVGYRVERHMRDGDFVLFNRQ 454

Query: 329  PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGV 388
            PSLH+MSIM H+ +I+P+ T R N SV +PYNADFDGDEMN+H+ Q+EE R E   LM V
Sbjct: 455  PSLHKMSIMGHQVKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSEETRAEIKHLMKV 514

Query: 389  QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLPTP 446
               + +P+  + ++   QD L +    TR+DTF  +      L+      G+    +P P
Sbjct: 515  PKQIVSPQGNKPVMGIVQDSLLAVSKFTRRDTFLTKPMVYNLLLQIPYWSGV----VPPP 570

Query: 447  AILKPVELWTGKQLFSVLI-----------RPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
            AIL PV LWTGKQLFS+L+           +   NM+  V   + ++   N L  +E DE
Sbjct: 571  AILHPVPLWTGKQLFSLLLFFDSSVSGGNTKTRINMQRDVGAGLVDRKKEN-LFLSERDE 629

Query: 496  EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
             + I            R  EL++G++ K  +G+ +   L  +L  + G   T   ++ L 
Sbjct: 630  RVII------------RQGELLAGKICKKIVGSASG-SLIHLLWLEAGPERTKDFLSTLQ 676

Query: 556  KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
            KL+  W+ + GF++G  D+   +E ++K   ++ +  +  +  I+  + G+L+ +PG   
Sbjct: 677  KLTNYWLLHQGFTVGCKDIIANEETNEKVRDILDQAKKEVDKLIRLAHRGRLESQPGKSL 736

Query: 616  AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
             ++ EA +   LN  RE +GK    SL   N+ + M   GSKGS INISQ++ACVGQQ+V
Sbjct: 737  RESFEARVNKELNSARERSGKVAAESLDESNNIMAMVLAGSKGSTINISQIMACVGQQNV 796

Query: 676  GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
             G+R P GF +RSLPHF +    P ++GFV NS+ SGL   E FFH MGGREG++DTA K
Sbjct: 797  EGKRIPFGFNERSLPHFHKFDYSPQSRGFVENSYLSGLEPHELFFHAMGGREGIIDTACK 856

Query: 736  TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFD- 794
            T++TGY+ RRL+KA+ED+ + YD +VRN+   ++QFLYG+DGM    +E ++ E +  D 
Sbjct: 857  TSETGYIQRRLMKAMEDVMVYYDRTVRNSICEVLQFLYGEDGMSGEFVEDQTVELMTLDN 916

Query: 795  ---RLLMKVKATCPPAGQRYLSPQQVSEI---------VEKQLAAYGKES---CSEAF-- 837
               + L +        G+ +LS +  +EI         +E++  A  ++    C   F  
Sbjct: 917  EKLKRLYRHDVDQESYGKGWLSDELRNEILTDYELQQPLEEEFEAIREDKNRLCRHIFKD 976

Query: 838  --------LNSLR-------KFFEGQQDKLDKKIKFVEDIG--WDDKSQILEEVTHKTSG 880
                    +N LR       +F  G   +    I+    +    ++K  ++++ T+  + 
Sbjct: 977  GETKQHIPINILRLLEFAKAQFPSGDSSRKQSPIEIARKVNELLNEKLVVVKQTTNADAI 1036

Query: 881  ITEKQ------LEVFIQTCFSRYRVKRVE------------------------AGTAIGA 910
              E Q      ++  ++T  +  R+   E                        AG  +GA
Sbjct: 1037 SAEVQENATIFMKAHLRTVLNSRRLLERECIGPKALQWLLGEVERHFHRALAHAGECVGA 1096

Query: 911  IGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECND 968
            I AQSIGEP TQMTL TFHFAGV S N+T GVPR+KE+IN AK++ TP +T  L  E   
Sbjct: 1097 IAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKQVKTPSLTVYLQDEIAM 1156

Query: 969  NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAH 1016
            ++  A+ V+  +E T L +V    +++        +I  D + ++D +
Sbjct: 1157 DQERAKDVQTHLEHTTLDRVTVVSQVIYDPDPTDTIIPQDRQWVRDYY 1204



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 8/177 (4%)

Query: 1074 VIVKGIKTVERVVIAEKEKEKRKVKENGEKK-----KYRLLVEGTGLQAVMGAEGIDGCK 1128
            + ++GI  + +V + E   E R +  N   K      + L  +G  L+ V+    +D  +
Sbjct: 1307 ITLRGITNISKVYMRE---EARTIYNNQLGKFERTNNWVLDTDGCNLEDVLPIPMVDDTR 1363

Query: 1129 TKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITR 1188
            T SN + E+   LGIEA R  ++ E+   +   G  ++ RH+ +L D MT +G ++ ITR
Sbjct: 1364 TTSNDMTEIFHVLGIEAVRRALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITR 1423

Query: 1189 FGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             GI ++DK  LM  SFE+T + L  A+V    D + GV+E I+MG   PLGTG   +
Sbjct: 1424 HGINRIDKGPLMKCSFEETVEILMEAAVFAEADHLRGVTENIMMGQLCPLGTGYFDV 1480


>gi|154414043|ref|XP_001580050.1| RNA polymerase II [Trichomonas vaginalis G3]
 gi|121914263|gb|EAY19064.1| RNA polymerase II [Trichomonas vaginalis G3]
          Length = 1661

 Score =  557 bits (1436), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 399/1274 (31%), Positives = 627/1274 (49%), Gaps = 129/1274 (10%)

Query: 91   VLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITER 146
            VL +F+ ++D D  +L  + +   P+ +I+  + VPP+A+RP V+  G S  +++DIT +
Sbjct: 219  VLRIFENISDQDVRLLGFNPKRSHPKWMILKILPVPPLAVRPQVVSPGQSAPSQDDITHK 278

Query: 147  LKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM-QVARPLSGF 205
            L  II  N  L+ +  E+++          LQ  +  Y+ +D   +  ++ +  RPL   
Sbjct: 279  LSDIIICNKRLRAQRSESSTDTAMKETRTLLQYHITTYMINDKPSIERAVTKSGRPLKVI 338

Query: 206  VQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNI 265
             QRLKGK+G  RG+LSGKR +Y+ R+VISPDP++ I +V +P ++A+ILT+PE V+  N 
Sbjct: 339  SQRLKGKEGHLRGHLSGKRDDYSARSVISPDPSISIDQVGVPEQLAKILTFPEVVTPTNQ 398

Query: 266  EKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLF 325
            + L   +  G D   GA  +    GT R       +   + L  G IV+RHL D D+V+F
Sbjct: 399  KWLESIVMKGHDDLGGANFVINDHGT-RTDLSCCTDLSTITLSPGYIVERHLRDDDIVIF 457

Query: 326  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
            NRQPSLH+MS+M HRA IM  RT R N     PYNADFDGDEMN+HVPQ++ ARTE   +
Sbjct: 458  NRQPSLHKMSMMGHRALIMSGRTFRLNLCDTTPYNADFDGDEMNLHVPQSQTARTEVRHI 517

Query: 386  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPT 445
            M V   + +P+  + ++   QD L    L++++DTF  R     +  ++    D + LP 
Sbjct: 518  MAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFLTRNQVMNLMMWLPTTKDTI-LPP 576

Query: 446  PAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 505
            P ILKPV+LW+GKQ+FS+ +             +   +YS    + + +      ++   
Sbjct: 577  PCILKPVQLWSGKQVFSLFLP-----------KISHNSYSQDANKMDQN------SIPLA 619

Query: 506  DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
            D  V  R+  L++G L K T+   ++  L  V++  Y  +     +N+   +   W+ + 
Sbjct: 620  DRHVIIRDGNLLAGILDKKTVAR-SEGSLIHVVINSYNTNIAKDFLNQTQLIVNNWLEHR 678

Query: 566  GFSIG-IDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
            GFSIG ID V P   L + K ++     +V    IK   +G+L+  PG    Q+ E  + 
Sbjct: 679  GFSIGLIDCVVPDFVLQEVKHEIDDVESKVQATIIKA-QDGQLERMPGMSYMQSFETEVN 737

Query: 625  DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
            ++ N I     K     +   NS   M   GSKG+  N+SQ++  VGQQ++ G+R   GF
Sbjct: 738  NLTNEILSKTYKVINAKIRRDNSLSEMLSAGSKGADTNMSQIIGVVGQQNMEGKRVKFGF 797

Query: 685  IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
              R+LPHF +       +GF  NS+ +GL+  EF FH MGGR G++DTA KT+DTGY+ R
Sbjct: 798  NGRTLPHFQKHEYGLVERGFCKNSYIAGLTPPEFLFHAMGGRTGIIDTACKTSDTGYIQR 857

Query: 745  RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK--SGEPLNFDRLLMKVKA 802
            RL+K++E   + YD +VRN+   IVQF+YG DG+D   +E +  +   LN +  + K   
Sbjct: 858  RLVKSMESHHVAYDGTVRNSQNEIVQFIYGGDGLDATGLETQRLALVTLNDEDFMKKYHL 917

Query: 803  TC--PPAGQRYLSPQQVSEIV------------EKQLAAYGKESCSEAFLN--------- 839
                P  GQ  +    + E +            E +L  Y +    E F N         
Sbjct: 918  ATEDPTFGQVEMDDFVLDEFLKTPNKDKFLKEEENRLREYREILQKEIFPNGSNTVVVPV 977

Query: 840  SLRKFFEGQQDKLDKKIKFVE-DIGWDDKSQILEE------VTHKTSGITEKQLE----- 887
            ++ +  E  Q + D  +   + D+   D    ++E      V      I+  + E     
Sbjct: 978  NIARIIESSQRQFDINVHVSKSDLNPLDIISRVDECVNSLIVVKGNDNISRTEQENATLL 1037

Query: 888  --------VFIQTCFSRYRVKRVEAGTAIGAIG---AQSIGEPG---------------T 921
                    +  + C   YR+        +G+I     +SI  PG               T
Sbjct: 1038 LRIMLYSHLSAKQCIFEYRLNEQAFKYILGSIKDRFYRSIVAPGEMVGTIAGQSIGEPST 1097

Query: 922  QMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECN--DNENAARVVKGR 979
            QMTL TFHFAG+++ ++T GVPR+ E++N AK I TP +T E E +   +E   + V+ +
Sbjct: 1098 QMTLNTFHFAGISAHDVTLGVPRLNELMNLAKHIRTPSVTVEFERDVAKDEEIVKAVRAQ 1157

Query: 980  IEKTLLGQVAKSIKIVMTSRLASIVIALDMETI--------------QD-AHLCINADIV 1024
            IE     +     +I         +I  D + I              QD A   +  +I 
Sbjct: 1158 IESASFKKFVIKAEIYYDPNPEETIIEPDTKWINTRIRYGGVEDRELQDLAPWVLRFEIN 1217

Query: 1025 KESIVQT--PKIKLKQQHIKVL-----------DFRKLEIFPPVDKSKIHFEL------Y 1065
            +E ++ +    I    Q IK +           D R + +   +   +  F +       
Sbjct: 1218 REEMIASNIESISDIVQKIKGMYGDKFFVIGDDDARIIRMQARLKDEQAEFAMDVKFLRE 1277

Query: 1066 SLKNVLPMVIVKGIKTVERVVI---AEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAE 1122
            + + +     +KGI  + RV I   AEK     +     ++K   L  EGT  + ++  +
Sbjct: 1278 TEQQMYKSFTLKGIPGISRVKINSAAEKMFLNPETHGFDKEKVSCLYTEGTAFREILSLD 1337

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
             +D   T +N I++V   LGIEAAR  +  E+   M+  G ++++RH+ LLAD MT  G 
Sbjct: 1338 HVDTVHTITNDIYQVCDVLGIEAARHSLSYEMMLIMENAGAALNRRHLDLLADTMTQYGV 1397

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            +  ++R GI K     LM AS+E T D  F+A+V    D +  VS  II G P   GTGI
Sbjct: 1398 LYPVSRHGINKTPTGTLMRASYEMTNDVFFDAAVFSEIDYMRDVSSNIIAGKPSRAGTGI 1457

Query: 1243 LKIRQRDAVPPMLK 1256
            +++   + + PM K
Sbjct: 1458 VEVLINEDLLPMTK 1471


>gi|1143740|gb|AAB50025.1| RNA polymerase II [Trichomonas vaginalis]
          Length = 1661

 Score =  557 bits (1435), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 399/1274 (31%), Positives = 627/1274 (49%), Gaps = 129/1274 (10%)

Query: 91   VLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITER 146
            VL +F+ ++D D  +L  + +   P+ +I+  + VPP+A+RP V+  G S  +++DIT +
Sbjct: 219  VLRIFENISDQDVRLLGFNPKRSHPKWMILKILPVPPLAVRPQVVSPGQSAPSQDDITHK 278

Query: 147  LKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM-QVARPLSGF 205
            L  II  N  L+ +  E+++          LQ  +  Y+ +D   +  ++ +  RPL   
Sbjct: 279  LSDIIICNKRLRAQRSESSTDTAMKETRTLLQYHITTYMINDKPSIERAVTKSGRPLKVI 338

Query: 206  VQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNI 265
             QRLKGK+G  RG+LSGKR +Y+ R+VISPD ++ I +V +P ++A+ILT+PE V+  N 
Sbjct: 339  SQRLKGKEGHLRGHLSGKRDDYSARSVISPDTSISIDQVGVPEQLAKILTFPEVVTPTNQ 398

Query: 266  EKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLF 325
            + L   +  G D   GA  +    GT R       +   + L  G IV+RHL D D+V+F
Sbjct: 399  KWLESIVMKGHDDLGGANFVINDHGT-RTDLSCCTDLSTITLSPGYIVERHLRDDDIVIF 457

Query: 326  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
            NRQPSLH+MS+M HRA IM  RT R N     PYNADFDGDEMN+HVPQ++ ARTE   +
Sbjct: 458  NRQPSLHKMSMMGHRALIMSGRTFRLNPCDTTPYNADFDGDEMNLHVPQSQTARTEVRHI 517

Query: 386  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPT 445
            M V   + +P+  + ++   QD L    L++++DTF  R     +  ++    D + LP 
Sbjct: 518  MAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFLTRNQVMNLMMWLPTTKDTI-LPP 576

Query: 446  PAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 505
            P ILKPV+LW+GKQ+FS+ +             +   +YS    + + +      ++   
Sbjct: 577  PCILKPVQLWSGKQVFSLFLP-----------KISHNSYSQDANKMDQN------SIPLA 619

Query: 506  DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
            D  V  R+  L++G LGK T+   ++  L  V++  Y  +     +N+   +   W+ + 
Sbjct: 620  DRHVIIRDGNLLAGILGKKTVAR-SEGSLIHVVINSYNTNIAKDFLNQTQLIVNNWLEHR 678

Query: 566  GFSIG-IDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
            GFSIG ID V P   L + K ++     +V    IK   +G+L+  PG    Q+ E  + 
Sbjct: 679  GFSIGLIDCVVPDFVLQEVKHEIDDVESKVQATIIKA-QDGQLERMPGMSYMQSFETEVN 737

Query: 625  DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
            ++ N I     K     +   NS   M   GSKG+  N+SQ++  VGQQ++ G+R   GF
Sbjct: 738  NLTNEILSKTYKVINAKIRGDNSLSEMLSAGSKGADTNMSQIIGVVGQQNMEGKRVKFGF 797

Query: 685  IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
              R+LPHF +       +GF  NS+ +GL+  EF FH MGGR G++DTA KT+DTGY+ R
Sbjct: 798  NGRTLPHFQKHEYGLVERGFCKNSYIAGLTPPEFLFHAMGGRTGIIDTACKTSDTGYIQR 857

Query: 745  RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK--SGEPLNFDRLLMKVKA 802
            RL+K++E   + YD +VRN+   IVQF+YG DG+D   +E +  +   LN +  + K   
Sbjct: 858  RLVKSMESHHVAYDGTVRNSQNEIVQFIYGGDGLDATGLETQRLALVTLNDEDFMKKYHL 917

Query: 803  TC--PPAGQRYLSPQQVSEIV------------EKQLAAYGKESCSEAFLN--------- 839
                P  GQ  +    + E +            E +L  Y +    E F N         
Sbjct: 918  ATEDPTFGQVEMDDFVLDEFLKTPNKDKFLKEEENRLREYREILQKEIFPNGSNTVVVPV 977

Query: 840  SLRKFFEGQQDKLDKKIKFVE-DIGWDDKSQILEE------VTHKTSGITEKQLE----- 887
            ++ +  E  Q + D  +   + D+   D    ++E      V      I+  + E     
Sbjct: 978  NIARIIESSQRQFDINVHVSKSDLNPLDIISRVDECVNSLIVVKGNDNISRTEQENATLL 1037

Query: 888  --------VFIQTCFSRYRVKRVEAGTAIGAIG---AQSIGEPG---------------T 921
                    +  + C   YR+        +G+I     +SI  PG               T
Sbjct: 1038 LRIMLYSHLSAKQCIFEYRLNEQAFKYILGSIKDRFYRSIVAPGEMVGTIAGQSIGEPST 1097

Query: 922  QMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECN--DNENAARVVKGR 979
            QMTL TFHFAG+++ ++T GVPR+ E++N AK I TP +T E E +   +E   + V+ +
Sbjct: 1098 QMTLNTFHFAGISAHDVTLGVPRLNELMNLAKHIRTPSVTVEFERDVAKDEEIVKAVRAQ 1157

Query: 980  IEKTLLGQVAKSIKIVMTSRLASIVIALDMETI--------------QD-AHLCINADIV 1024
            IE     +     +I         +I  D + I              QD A   +  +I 
Sbjct: 1158 IESASFKKFVIKAEIYYDPNPEETIIEPDTKWINTRIRYGGVEDRELQDLAPWVLRFEIN 1217

Query: 1025 KESIVQT--PKIKLKQQHIKVL-----------DFRKLEIFPPVDKSKIHFEL------Y 1065
            +E ++ +    I    Q IK +           D R + +   +   +  F +       
Sbjct: 1218 REEMIASNIESISDIVQKIKGMYGDKFFVIGDDDARIIRMQARLKDEQAEFAMDVKFLRE 1277

Query: 1066 SLKNVLPMVIVKGIKTVERVVI---AEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAE 1122
            + + +     +KGI  + RV I   AEK     +     ++K   L  EGT  + ++  +
Sbjct: 1278 TEQQMYKSFTLKGIPGISRVKINSAAEKMFLNPETHGFDKEKVSCLYTEGTAFREILSLD 1337

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
             +D   T +N I++V   LGIEAAR  +  E+   M+  G ++++RH+ LLAD MT  G 
Sbjct: 1338 HVDTVHTITNDIYQVCDVLGIEAARHSLSYEMMLIMEKAGAALNRRHLDLLADTMTQYGV 1397

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            +  ++R GI K     LM AS+E T D  F+A+V    D +  VS  II G P   GTGI
Sbjct: 1398 LYPVSRHGINKTPTGTLMRASYEMTNDVFFDAAVFSEIDYMRDVSSNIIAGKPSRAGTGI 1457

Query: 1243 LKIRQRDAVPPMLK 1256
            +++   + + PM K
Sbjct: 1458 VEVLINEDLLPMTK 1471


>gi|332796431|ref|YP_004457931.1| DNA-directed RNA polymerase subunit A' [Acidianus hospitalis W1]
 gi|332694166|gb|AEE93633.1| DNA-directed RNA polymerase subunit A' [Acidianus hospitalis W1]
          Length = 880

 Score =  556 bits (1434), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 301/720 (41%), Positives = 436/720 (60%), Gaps = 24/720 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L PV++    +R+ D D E+L     + RPE +I+T + VPPI IRPS++++     E+D
Sbjct: 175 LTPVDIRDRLERIPDDDVELLGYDPKTSRPEWMILTVLPVPPITIRPSIMIENGIRAEDD 234

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  I++ N  L++ +            W+ LQ  VA Y ++++ G+P S  +  RP
Sbjct: 235 LTHKLVDIVRINERLKESIDAGAPQLIVEDLWDLLQYHVATYFDNEIPGLPTSKHRSGRP 294

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRGNLSGKRV+++ RTVISPDPN+ I EV +PI +A+ILT PERV+
Sbjct: 295 LRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPIDIAKILTVPERVT 354

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
             NIE++R+ + NGPDK+PGA  +  PDG    L Y K R + A  L  G IV+RHL DG
Sbjct: 355 KWNIERMREYVLNGPDKWPGANYVIKPDGRRIDLRYVKDRKEFASTLAPGFIVERHLIDG 414

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D+V+FNRQPSLHR+S+M H+ +++P RT R N  VC PYNADFDGDEMN+HVPQ+EEA  
Sbjct: 415 DIVIFNRQPSLHRISMMAHKVKVLPGRTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIA 474

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           EA  LM V  N+ TP+ G  ++ S QD+++ ++L+T K T         +   +G     
Sbjct: 475 EAKELMTVHKNILTPRYGGPIMGSAQDYISGAYLLTVKTTLLTEDEVQTI---LGVANIS 531

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
            D+  PAIL P  L+TGKQ+ S+ +    N     N+       S   + T+ D      
Sbjct: 532 KDIGEPAILAPKRLYTGKQVVSLFLPEDFNYHGQANIA------SGPRLCTDED------ 579

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             CP+D ++  +N +L+ G   K  LGN   + +   L+R+Y        M+ + K+  R
Sbjct: 580 --CPHDSYIVIKNGKLLEGVFDKKALGNQQPESILHWLIREYPEDYGLWLMDNIFKVFIR 637

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           +I  HG ++ IDDV   +E   K  +   +  +     I +Y +G+L+  PG    ++LE
Sbjct: 638 YIEIHGLTMSIDDVTISQEAMAKIAEKAKQADKQVQELIAKYEKGELEQIPGRTLEESLE 697

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
           + I D L+++R DAG+     L   N+  IM++ G++GS +NI+QM A +GQQSV G R 
Sbjct: 698 SYILDTLDKLRNDAGEIAAADLDPFNNVYIMARTGARGSVLNITQMAAMLGQQSVRGERI 757

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
             G+ +R+LPHF R      A+GF+ +SF SGL+  E FFH   GREGLVDTAV+T+ +G
Sbjct: 758 SRGYYERALPHFKRNDISAEARGFIYSSFRSGLNPIELFFHAAAGREGLVDTAVRTSQSG 817

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           YM RRLI AL DL I+YD +VR   G ++Q LYG DG+ P  M    G+ ++ +R+L +V
Sbjct: 818 YMQRRLINALSDLRIEYDGTVRTLYGEVIQTLYGGDGVHP--MYSSHGKTVDVNRILERV 875


>gi|46670|emb|CAA32925.1| RNA polymerase subunit A (AA 1-880) [Sulfolobus acidocaldarius]
          Length = 880

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 314/800 (39%), Positives = 458/800 (57%), Gaps = 55/800 (6%)

Query: 9   LRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASA 68
           LR     + +V+    ++ K ++CP CG                          ++F   
Sbjct: 123 LRWPSAARRLVEYIKKISIKNLECPHCGE-------------------------KQFKIK 157

Query: 69  ITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPI 125
           +          N +   L+P  +    +R+ D+D E+L     S RPE +I+T + VPPI
Sbjct: 158 LEKPYNFNEERNGSIVKLSPSEIRDRLERIPDSDVELLGYDPKSSRPEWMILTVLPVPPI 217

Query: 126 AIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYI 185
            IRPS+ ++     E+D+T +L  II+ N  L++ +            W+ LQ  VA Y 
Sbjct: 218 TIRPSITIESGIRAEDDLTHKLVDIIRLNERLKESIEAGAPQLIIEDLWDLLQYHVATYF 277

Query: 186 NSDVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEV 244
           ++++ G+P +  +  RPL    QRLKGK+GRFRGNLSGKRV+++ RTVISPDPNL I EV
Sbjct: 278 DNEIPGLPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNLSIDEV 337

Query: 245 AIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQL 303
            IP  +AR+LT PERV++ NIE++RQ I NGPDK+PGA  +  PDG    L Y K R +L
Sbjct: 338 GIPYTIARMLTVPERVTNINIERIRQYIINGPDKWPGANYVIKPDGRRIDLRYVKDRKEL 397

Query: 304 AVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADF 363
           A  + +G +V+RHL DGDVVLFNRQPSLHR+S+M H+ R++P RT R N   C PYNADF
Sbjct: 398 ASSITAGYVVERHLVDGDVVLFNRQPSLHRISMMAHKVRVLPGRTFRLNLLDCPPYNADF 457

Query: 364 DGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY- 422
           DGDEMN+HVPQ+EEA  EA  LM V  N+ TP+ G  ++   QD+++ ++L++ K T   
Sbjct: 458 DGDEMNLHVPQSEEAIAEARELMLVHKNIITPRYGGPIIGGGQDYISGAYLLSVKTTLLT 517

Query: 423 --DRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVK 480
             + A    +  ++G+      L  PAIL P   +TGKQ+ S+ +    N     N++  
Sbjct: 518 VEEVATILGVTDFVGE------LGEPAILAPKPYYTGKQVISLFLPKDFNFHGPANIS-- 569

Query: 481 EKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLR 540
                 K  R   DE      +CP+D F+  +N  L+ G   K  +GN   + +    +R
Sbjct: 570 ------KGPRACKDE------ICPHDSFIVIKNGLLLEGVFDKKAIGNQQPESMLHWSIR 617

Query: 541 DYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIK 600
           +YG       M+ + K+  R++   GF++ ++D+    E  ++    I E Y   +  I+
Sbjct: 618 EYGTEYGKWLMDNVFKMFIRFLEMRGFTMTLEDITIPDEAQNEITTKIKEGYSQVDEYIR 677

Query: 601 EYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSP 660
           ++NEG+L+  PG    ++LE+ I D L+++R+ AG+     L   N+  IM+  G++GS 
Sbjct: 678 KFNEGQLEPIPGRTIEESLESYILDTLDKLRKVAGEIATKYLDPFNNVYIMAITGARGSE 737

Query: 661 INISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFF 720
           +NI+QM A +GQQSV G R   G+ +R+L  F      P A+GFV NSF  GLS  E FF
Sbjct: 738 LNITQMTALLGQQSVRGERIRRGYRERTLSLFKYGDIAPEARGFVKNSFMRGLSPYEMFF 797

Query: 721 HTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDP 780
           H  GGREGLVDTAVKT+ +GYM RRLI AL DL I+YD +VR+  G IVQ +YGDD + P
Sbjct: 798 HAAGGREGLVDTAVKTSQSGYMQRRLINALSDLRIEYDGTVRSLYGDIVQVVYGDDAVHP 857

Query: 781 ANMEGKSGEPLNFDRLLMKV 800
             M     + +N +R++ +V
Sbjct: 858 --MYSAHSKSVNVNRVIERV 875


>gi|70606495|ref|YP_255365.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
           DSM 639]
 gi|449066707|ref|YP_007433789.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
           N8]
 gi|449068981|ref|YP_007436062.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
           Ron12/I]
 gi|73920763|sp|P11512.2|RPOA1_SULAC RecName: Full=DNA-directed RNA polymerase subunit A'
 gi|68567143|gb|AAY80072.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
           DSM 639]
 gi|449035215|gb|AGE70641.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
           N8]
 gi|449037489|gb|AGE72914.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
           Ron12/I]
          Length = 880

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 314/800 (39%), Positives = 458/800 (57%), Gaps = 55/800 (6%)

Query: 9   LRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASA 68
           LR     + +V+    ++ K ++CP CG                          ++F   
Sbjct: 123 LRWPSAARRLVEYIKKISIKNLECPHCGE-------------------------KQFKIK 157

Query: 69  ITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPI 125
           +          N +   L+P  +    +R+ D+D E+L     S RPE +I+T + VPPI
Sbjct: 158 LEKPYNFNEERNGSIVKLSPSEIRDRLERIPDSDVELLGYDPKSSRPEWMILTVLPVPPI 217

Query: 126 AIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYI 185
            IRPS+ ++     E+D+T +L  II+ N  L++ +            W+ LQ  VA Y 
Sbjct: 218 TIRPSITIESGIRAEDDLTHKLVDIIRLNERLKESIEAGAPQLIIEDLWDLLQYHVATYF 277

Query: 186 NSDVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEV 244
           ++++ G+P +  +  RPL    QRLKGK+GRFRGNLSGKRV+++ RTVISPDPNL I EV
Sbjct: 278 DNEIPGLPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNLSIDEV 337

Query: 245 AIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQL 303
            IP  +AR+LT PERV++ NIE++RQ I NGPDK+PGA  +  PDG    L Y K R +L
Sbjct: 338 GIPYTIARMLTVPERVTNINIERIRQYIINGPDKWPGANYVIKPDGRRIDLRYVKDRKEL 397

Query: 304 AVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADF 363
           A  + +G +V+RHL DGDVVLFNRQPSLHR+S+M H+ R++P RT R N   C PYNADF
Sbjct: 398 ASSITAGYVVERHLVDGDVVLFNRQPSLHRISMMAHKVRVLPGRTFRLNLLDCPPYNADF 457

Query: 364 DGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY- 422
           DGDEMN+HVPQ+EEA  EA  LM V  N+ TP+ G  ++   QD+++ ++L++ K T   
Sbjct: 458 DGDEMNLHVPQSEEAIAEARELMLVHKNIITPRYGGPIIGGGQDYISGAYLLSVKTTLLT 517

Query: 423 --DRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVK 480
             + A    +  ++G+      L  PAIL P   +TGKQ+ S+ +    N     N++  
Sbjct: 518 VEEVATILGVTDFVGE------LGEPAILAPKPYYTGKQVISLFLPKDFNFHGPANIS-- 569

Query: 481 EKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLR 540
                 K  R   DE      +CP+D F+  +N  L+ G   K  +GN   + +    +R
Sbjct: 570 ------KGPRACKDE------ICPHDSFIVIKNGLLLEGVFDKKAIGNQQPESMLHWSIR 617

Query: 541 DYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIK 600
           +YG       M+ + K+  R++   GF++ ++D+    E  ++    I E Y   +  I+
Sbjct: 618 EYGTEYGKWLMDNVFKMFIRFLEMRGFTMTLEDITIPDEAQNEITTKIKEGYSQVDEYIR 677

Query: 601 EYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSP 660
           ++NEG+L+  PG    ++LE+ I D L+++R+ AG+     L   N+  IM+  G++GS 
Sbjct: 678 KFNEGQLEPIPGRTIEESLESYILDTLDKLRKVAGEIATKYLDPFNNVYIMAITGARGSE 737

Query: 661 INISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFF 720
           +NI+QM A +GQQSV G R   G+ +R+L  F      P A+GFV NSF  GLS  E FF
Sbjct: 738 LNITQMTALLGQQSVRGERIRRGYRERTLSLFKYGDIAPEARGFVKNSFMRGLSPYEMFF 797

Query: 721 HTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDP 780
           H  GGREGLVDTAVKT+ +GYM RRLI AL DL I+YD +VR+  G IVQ +YGDD + P
Sbjct: 798 HAAGGREGLVDTAVKTSQSGYMQRRLINALSDLRIEYDGTVRSLYGDIVQVVYGDDAVHP 857

Query: 781 ANMEGKSGEPLNFDRLLMKV 800
             M     + +N +R++ +V
Sbjct: 858 --MYSAHSKSVNVNRVIERV 875


>gi|242398380|ref|YP_002993804.1| DNA-directed RNA polymerase subunit alpha [Thermococcus sibiricus
           MM 739]
 gi|242264773|gb|ACS89455.1| DNA-directed RNA polymerase subunit alpha [Thermococcus sibiricus
           MM 739]
          Length = 905

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 315/809 (38%), Positives = 469/809 (57%), Gaps = 57/809 (7%)

Query: 10  RKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAI 69
           RK+++  +++ +    A + + CP CG              I  +R  +   L+      
Sbjct: 126 RKSEI-DALISEIHKKAKERMVCPHCG---------APQFSIKFERPTIYWELR------ 169

Query: 70  THTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIA 126
             T E     N   + + P  +    +++ D D  +L L+    RPE +++T + VPP++
Sbjct: 170 --TDEEG---NEYRHRMMPSEIRDRLEKIPDKDLPLLGLNPENSRPEWMVLTVLPVPPVS 224

Query: 127 IRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYIN 186
           +RPS+ ++     E+D+T +L  II+ NA L+Q +            W+ LQ  V  Y +
Sbjct: 225 VRPSITLESGIRAEDDLTHKLVDIIRINARLKQNIEAGAPQLIIEDLWDLLQYHVTTYFD 284

Query: 187 SDVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVA 245
           ++  G+P +  +  RPL    QRLKGK+GRFR NLSGKRV ++ RTVISPDP + I EV 
Sbjct: 285 NETSGIPPAKHKSGRPLKTLAQRLKGKEGRFRKNLSGKRVNFSARTVISPDPMISINEVG 344

Query: 246 IPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAV 305
           +P+ +A  LT PE+V+D N+EKLR+ I NGP+KYPGA  +  P G    L       +A 
Sbjct: 345 VPLIVAMELTVPEKVTDFNLEKLRKMILNGPEKYPGANYVIDPQGRRIRLMESNLETIAD 404

Query: 306 ELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDG 365
            +  G  V+RHL +GDVVLFNRQPSLHRMSIM HR R+MP++T R N +VC PYNADFDG
Sbjct: 405 MIDIGWTVERHLMNGDVVLFNRQPSLHRMSIMAHRVRVMPYKTFRLNLAVCPPYNADFDG 464

Query: 366 DEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRA 425
           DEMN+HVPQTEEA+ EA +LM VQN++ +P+ G  ++   QD ++  +L+TR+  ++ + 
Sbjct: 465 DEMNLHVPQTEEAQAEARILMEVQNHILSPRYGGPIIGGIQDHISGGYLLTREGAYFTKY 524

Query: 426 AFSLMCCYMGDGMDRVDLPTP-AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTY 484
               M  +   G++  +LP P  +   +E W+GK +FS+L+ P        NLT+    Y
Sbjct: 525 EVEHMLMFA--GVEVKELPKPDKVENGIEYWSGKTVFSLLL-PE-------NLTI---WY 571

Query: 485 SNKLI----RTEGDEEIRIETMCPN---------DGFVYFRNSELISGQLGKATLGNGNK 531
            NKL     + E  E++  E + P+         DGFVY    +L+SG + K     G +
Sbjct: 572 RNKLCDDPSQCEPIEKLIEEKLIPSEKEVKKVATDGFVYILKGKLLSGAIDKKAY--GRE 629

Query: 532 DG-LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISE 590
           DG L ++++R+YG       ++++ KL+   I + GF+ GIDD     E   +  ++I E
Sbjct: 630 DGELLNIIVREYGVERARQFLDQVTKLAIWVITHKGFTTGIDDEDLPGEAKARIKEIIME 689

Query: 591 NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLI 650
                   I+ Y  G+L+  PG    +TLE+ I  +L+  R++AGK     L   N  +I
Sbjct: 690 AEGKVQRLIEAYKNGELEPLPGKTLEETLESRIMAVLSEARDNAGKVAERYLGMNNHTVI 749

Query: 651 MSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFY 710
           M++ G++G  +NI+QM A +GQQS+ G+R   G+  R L HF        AKGF+ NS+ 
Sbjct: 750 MAKTGARGKILNITQMAAILGQQSIRGKRLYRGYRSRVLSHFKAGDLGARAKGFIVNSYK 809

Query: 711 SGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQ 770
           SGL+  E+FFH MGGREGLVDTAV+TA +GYM RRLI AL+DL + YD +VR+  G +VQ
Sbjct: 810 SGLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIVVQ 869

Query: 771 FLYGDDGMDPANMEGKSGEPLNFDRLLMK 799
           F YG+DG+DP  M+   G  +N DR++ +
Sbjct: 870 FRYGEDGVDP--MKSWGGRTVNIDRIVTR 896


>gi|385805645|ref|YP_005842043.1| DNA-directed RNA polymerase subunit alpha [Fervidicoccus fontis
           Kam940]
 gi|383795508|gb|AFH42591.1| DNA-directed RNA polymerase subunit alpha [Fervidicoccus fontis
           Kam940]
          Length = 882

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 304/792 (38%), Positives = 451/792 (56%), Gaps = 49/792 (6%)

Query: 14  LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTK 73
           L+  + +     ASK   CP CG     +K                          T  +
Sbjct: 130 LLPRLYEHIKQKASKTTVCPHCGAAQRKIK---------------------LERPTTFLE 168

Query: 74  ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPS 130
           E K +    +  L P  +        D D  +  ++    RPE  I+T + VPP+ +RPS
Sbjct: 169 EEKGS----SRKLAPDEIRNRLSNTPDDDVRLFGINPEDSRPEWFILTVLPVPPVQVRPS 224

Query: 131 VIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVR 190
           ++++     E+D+T +L  I++TN  L++ +  A         WE LQ  V  Y +++V 
Sbjct: 225 IMLETGIRAEDDLTHKLVDIVRTNQRLKESMEAAAPPIVIDDIWELLQYHVTTYFDNEVP 284

Query: 191 GVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIR 249
           G+P +  +  R L    QRLKGK+GRFRG LSGKRV+++ RTVISPDPN+ I EV +P  
Sbjct: 285 GIPPAKHRTGRALKTLAQRLKGKEGRFRGYLSGKRVDFSSRTVISPDPNIGINEVGVPED 344

Query: 250 MARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGT-ARVLYGKFRNQLAVELK 308
            A+ILT P +V+  N+E++R  + NGP K+PGA  I  PDG    + Y K R  LA  L 
Sbjct: 345 AAKILTVPVKVTQWNLEEMRSYVLNGPYKWPGANYIIRPDGKRVDLRYFKDRKALASSLT 404

Query: 309 SGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEM 368
            G I++RHL DGD+VLFNRQPSLHRMSIM H+ +++P RT R N  VC PYNADFDGDEM
Sbjct: 405 PGYIIERHLIDGDIVLFNRQPSLHRMSIMAHQVKVLPGRTFRLNLLVCPPYNADFDGDEM 464

Query: 369 NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 428
           N+HVPQTEEAR EA  LM VQ ++ +P+ G  ++   QD+++  +L+T K T  ++    
Sbjct: 465 NLHVPQTEEARAEAKELMLVQRHILSPRYGGPIIGGLQDYISGGYLLTSKATLLEKEDVI 524

Query: 429 LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKL 488
            +    G    + +LP PAI  P E WTGKQL S+ +          + T+K K   N  
Sbjct: 525 EVLSVTGY---KEELPEPAIYSPKEFWTGKQLVSLFLPK--------DFTLKTKASINAG 573

Query: 489 IRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
                DE+      C ND ++  +  ++ +G + K ++G    +  Y  + ++YG+    
Sbjct: 574 KLKCEDED------CLNDSYIVIKKGKMHTGVIDKKSIGAQQPESFYHWITKEYGSDYAR 627

Query: 549 GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
              + + K+  R+I  HGF++ +DDV+  +E  ++  K++ +  +  N  I+   EG+L+
Sbjct: 628 YISDVMFKMFIRYIEKHGFTMSLDDVEISEEAREEIRKILKKAEDDVNELIRMMEEGRLE 687

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
             PG    +TLE  I + L++ R+DAG+    +L   N+  IM++ G++G+ +N++QM A
Sbjct: 688 PLPGRTIEETLETKIMERLSKARDDAGEYAANNLDIFNNAFIMARTGARGNILNLTQMSA 747

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            +GQQS+ G R   G+ +R LPHF    K PA++GFV NSF +GL+  E F+H  GGREG
Sbjct: 748 TLGQQSIRGERINRGYRNRPLPHFKENDKSPASRGFVYNSFRTGLNPVELFYHAAGGREG 807

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSG 788
           LVDTAV+T+ +GYM RRLI AL D+ I+YD S R   G +VQF YG D +DPA  +   G
Sbjct: 808 LVDTAVRTSQSGYMQRRLINALLDVRIEYDGSARLPDGTVVQFKYGYDQVDPAKSD--HG 865

Query: 789 EPLNFDRLLMKV 800
           + +N DR++ +V
Sbjct: 866 KAVNVDRIIERV 877


>gi|237833803|ref|XP_002366199.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
            gondii ME49]
 gi|211963863|gb|EEA99058.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
            gondii ME49]
          Length = 1892

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 355/1008 (35%), Positives = 552/1008 (54%), Gaps = 107/1008 (10%)

Query: 94   LFKRMTDTDCEVL-YLSER--PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
            + +R+++ D +++ +  ER  P   I++ + +PP+A+RPSV   GS  +E+D+T +L  I
Sbjct: 219  VLRRISEEDLKMMGFDPERAHPASFILSTLPIPPLAVRPSVQY-GSARSEDDLTLKLVDI 277

Query: 151  IQTNASLQQELVEANSA-FKSLAGWETLQVEVAQYINSDVRGVPF-SMQVARPLSGFVQR 208
            ++TN SL+++      A  + +     LQ  V    ++D+ G+P  + +  +P+     R
Sbjct: 278  VKTNLSLKRQGDSVPGAVLQEMV--MLLQYHVTTLFDNDIPGMPVATTRGKKPIKSIRAR 335

Query: 209  LKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKL 268
            LKGK+GR RGNL GKRV+++ RTVI+ DP L I  V +P  +A  LTYPE V+  NI +L
Sbjct: 336  LKGKEGRLRGNLMGKRVDFSARTVITGDPMLPIDTVGVPKSIAMTLTYPEFVTPLNIGQL 395

Query: 269  RQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQ 328
            RQ ++ GP  +PGA+ +   DG+ R      +    V L+ G  V+RH+ DGD VLFNRQ
Sbjct: 396  RQLVKTGPFDWPGAKYVIRDDGS-RFDLRHAKKGGEVVLEVGYRVERHMRDGDFVLFNRQ 454

Query: 329  PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGV 388
            PSLH+MSIM H+ +I+P+ T R N SV +PYNADFDGDEMN+H+ Q+EE R E   LM V
Sbjct: 455  PSLHKMSIMGHQVKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSEETRAEIKHLMKV 514

Query: 389  QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLPTP 446
               + +P+  + ++   QD L +    TR+DTF  +      L+      G+    +P P
Sbjct: 515  PKQIVSPQGNKPVMGIVQDSLLAVSKFTRRDTFLTKPMVYNLLLQIPYWSGV----VPPP 570

Query: 447  AILKPVELWTGKQLFSVLI-----------RPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
            AIL PV LWTGKQLFS+L+           +   NM+  V   + ++   N L  +E DE
Sbjct: 571  AILHPVPLWTGKQLFSLLLFFDSSVSGGNTKTRINMQRDVGAGLVDRKKEN-LFLSERDE 629

Query: 496  EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
             + I            R  EL++G++ K  +G+ +   L  +L  + G   T   ++ L 
Sbjct: 630  RVII------------RQGELLAGKICKKIVGSASG-SLIHLLWLEAGPERTKDFLSTLQ 676

Query: 556  KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
            KL+  W+ + GF++G  D+   +E ++K   ++ +  +  +  I+  + G+L+ +PG   
Sbjct: 677  KLTNYWLLHQGFTVGCKDIIANEETNEKVRDILDQAKKEVDKLIRLAHRGRLESQPGKSL 736

Query: 616  AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
             ++ EA +   LN  RE +GK    SL   N+ + M   GSKGS INISQ++ACVGQQ+V
Sbjct: 737  RESFEARVNKELNSARERSGKVAAESLDESNNIMAMVLAGSKGSTINISQIMACVGQQNV 796

Query: 676  GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
             G+R P GF +RSLPHF +    P ++GFV NS+ SGL   E FFH MGGREG++DTA K
Sbjct: 797  EGKRIPFGFNERSLPHFHKFDYSPQSRGFVENSYLSGLEPHELFFHAMGGREGIIDTACK 856

Query: 736  TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFD- 794
            T++TGY+ RRL+KA+ED+ + YD +VRN+   ++QFLYG+DGM    +E ++ E +  D 
Sbjct: 857  TSETGYIQRRLMKAMEDVMVYYDRTVRNSICEVLQFLYGEDGMSGEFVEDQTVELMTLDN 916

Query: 795  ---RLLMKVKATCPPAGQRYLSPQQVSEI---------VEKQLAAYGKES---CSEAF-- 837
               + L +        G+ +LS +  +EI         +E++  A  ++    C   F  
Sbjct: 917  EKLKRLYRHDVDQESYGKGWLSDELRNEILTDYELQQPLEEEFEAIREDKNRLCRHIFKD 976

Query: 838  --------LNSLR-------KFFEGQQDKLDKKIKFVEDIG--WDDKSQILEEVTHKTSG 880
                    +N LR       +F  G   +    I+    +    ++K  ++++ T+  + 
Sbjct: 977  GETKQHIPINILRLLEFAKAQFPSGDSSRKQSPIEIARKVNELLNEKLVVVKQTTNADAI 1036

Query: 881  ITEKQ------LEVFIQTCFSRYRVKRVE------------------------AGTAIGA 910
              E Q      ++  ++T  +  R+   E                        AG  +GA
Sbjct: 1037 SAEVQENATIFMKAHLRTVLNSRRLLERECIGPKALQWLLGEVERHFHRALAHAGECVGA 1096

Query: 911  IGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECND 968
            I AQSIGEP TQMTL TFHFAGV S N+T GVPR+KE+IN AK++ TP +T  L  E   
Sbjct: 1097 IAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKQVKTPSLTVYLQDEIAM 1156

Query: 969  NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAH 1016
            ++  A+ V+  +E T L +V    +++        +I  D + ++D +
Sbjct: 1157 DQERAKDVQTHLEHTTLDRVTVVSQVIYDPDPTDTIIPQDRQWVRDYY 1204



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 8/177 (4%)

Query: 1074 VIVKGIKTVERVVIAEKEKEKRKVKENGEKK-----KYRLLVEGTGLQAVMGAEGIDGCK 1128
            + ++GI  + +V + E   E R +  N   K      + L  +G  L+ V+    +D  +
Sbjct: 1307 ITLRGITNISKVYMRE---EARTIYNNQLGKFERTNNWVLDTDGCNLEDVLPIPMVDDTR 1363

Query: 1129 TKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITR 1188
            T SN + E+   LGIEA R  ++ E+   +   G  ++ RH+ +L D MT +G ++ ITR
Sbjct: 1364 TTSNDMTEIFHVLGIEAVRRALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITR 1423

Query: 1189 FGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             GI ++DK  LM  SFE+T + L  A+V    D + GV+E I+MG   PLGTG   +
Sbjct: 1424 HGINRIDKGPLMKCSFEETVEILMEAAVFAEADHLRGVTENIMMGQLCPLGTGYFDV 1480


>gi|146302819|ref|YP_001190135.1| DNA-directed RNA polymerase subunit A' [Metallosphaera sedula DSM
           5348]
 gi|145701069|gb|ABP94211.1| DNA-directed RNA polymerase, subunit A' [Metallosphaera sedula DSM
           5348]
          Length = 886

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 300/720 (41%), Positives = 437/720 (60%), Gaps = 24/720 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++    +R+ D+D E+L     + RPE +I+T + VPPI IRPS++++     E+D
Sbjct: 181 LTPSDIRERLERIPDSDVELLGYDPTTSRPEWIILTVLPVPPITIRPSIMIESGIRAEDD 240

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  I++ N  L++ +            W+ LQ  VA Y ++++ G+P S  +  RP
Sbjct: 241 LTHKLVDIVRINERLKESIDAGAPQLIVEDLWDLLQYHVATYFDNEIPGLPTSKHRSGRP 300

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRGNLSGKRV+++ RTVISPDPN+ I EV +P  +A+ILT PE+V+
Sbjct: 301 LRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNISIDEVGVPYDVAQILTVPEKVT 360

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
             NIE++RQ + NGPDK+PGA  +  PDG    L Y K R +LA  L    IV+RHL DG
Sbjct: 361 KWNIERMRQYVINGPDKWPGANYVVRPDGRRIDLRYVKDRKELAATLAPNFIVERHLVDG 420

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D+V+FNRQPSLHR+S+M H+ R++P RT R N  VC PYNADFDGDEMN+HVPQ+EEA  
Sbjct: 421 DIVIFNRQPSLHRISMMGHKVRVLPGRTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIA 480

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           E   LM V  N+ TP+ G  ++ S QD+++ ++L+T K T         +   +G     
Sbjct: 481 ETKELMTVHRNILTPRYGGPIIGSAQDYISGAYLLTVKTTLLTEDEVQTI---LGVANIN 537

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
            +L  PAIL P  L+TGKQ+ S  +    N     N++          +R+  DE+    
Sbjct: 538 KNLEEPAILAPKRLYTGKQIVSHFLPEDFNFHGPANISSG--------VRSCKDED---- 585

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             CP+D +V  +  +L+ G   K  LGN   + +   L+R+Y        M+ L K+  R
Sbjct: 586 --CPHDSYVVIKKGKLLEGVFDKKALGNQQAESILHWLVREYDEDYVLWLMDNLFKVFLR 643

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           +I  HG ++ + DV   +E + K  +   E  +  N  I+ Y +G+L++ PG    ++LE
Sbjct: 644 YIELHGLTMTLSDVTIPEEATKKIAERAQEARKKVNELIESYEKGQLEVIPGRTLEESLE 703

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
           + I D L+++R +AG+     L   N+  IM++ G++GS +NI+QM A +GQQSV G R 
Sbjct: 704 SYILDALDKLRNEAGEIATTYLDPFNNAYIMARTGARGSVLNITQMAAMLGQQSVRGERI 763

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
             G+  R+LPHF      P A+GF+ +SF SGL+  E FFH  GGREGLVDTAV+T+ +G
Sbjct: 764 KRGYATRTLPHFKPGDITPEARGFIYSSFRSGLNPIETFFHAAGGREGLVDTAVRTSQSG 823

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           YM RRLI AL DL ++YD +VR   G ++Q LYG DG+ P  M+   G+ ++ DR+L +V
Sbjct: 824 YMQRRLINALSDLRVEYDGTVRTLYGEMIQTLYGGDGVHP--MQSAHGKTIDVDRVLERV 881


>gi|33326219|gb|AAQ08519.1| RNA polymerase II largest subunit [Psilotum nudum]
          Length = 1013

 Score =  554 bits (1427), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 307/727 (42%), Positives = 434/727 (59%), Gaps = 36/727 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + K+++D DC  L L+    RP+ +I+  + +PP ++RPSV+MD S  +E+D
Sbjct: 134 LSAEKVLSILKQISDEDCVTLGLNPKYARPDWMILQVLPIPPPSVRPSVMMDTSARSEDD 193

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAG--WETLQVEVAQYINSDVRGVPFSMQVA- 199
           +T +L  II+ N +L+++  E N A   +     + LQ  +A Y ++D+ G P + Q + 
Sbjct: 194 LTHQLAMIIRHNNNLKRQ--EQNGAPTHIINEFAQLLQFHIATYFDNDLPGQPRATQRSG 251

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+    QRLK K+GR RGNL GKRV+++ RTVI+PDPN+ I E+ +P  +A  LTYPE 
Sbjct: 252 RPIKSICQRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPET 311

Query: 260 VSDHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
           V+ +NIE+L++ ++ GP   PG   AR I   DG  R+     +      L+ G  V+RH
Sbjct: 312 VTPYNIERLKELVEYGPHPPPGKTGARYIIREDG-QRLDLRFLKKSSDRHLELGYKVERH 370

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           L DGD VLFNRQPSLH+MSIM H+ RIMP+ T R N SV +PYNADFDGDEMNMHVPQ+ 
Sbjct: 371 LNDGDFVLFNRQPSLHKMSIMGHKIRIMPFSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 430

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           E R E L LM V   + +P++   ++   QD L     +T++DTF ++  F  +  +  D
Sbjct: 431 ETRAEVLELMMVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWED 490

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
              ++  P P ILKP  LWTGKQLFS++I    N+            +S   + +E  E 
Sbjct: 491 FDGKI--PAPTILKPKPLWTGKQLFSLIIPKQINL----------IRFSAWHLDSEVGE- 537

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
                + P D  V     ELISG L K TLG      L  V+  + G  A    +     
Sbjct: 538 -----ITPGDTVVRIEKGELISGTLCKKTLGTSG-GSLIHVIWEEVGPDAARKFLGHTQW 591

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           L   W+  HGFSIGI D        +K  + I++        IK   E +L+ +PG    
Sbjct: 592 LVNYWLLQHGFSIGIGDTIADAATMEKINESIAKAKNEVKELIKMAQEKQLEAEPGRTTM 651

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           ++ E  +  +LNR R+DAG +   SL   N+   M   GSKGS INISQM+ACVGQQ+V 
Sbjct: 652 ESFENRVNQVLNRARDDAGSSAQRSLSESNNVKAMVTAGSKGSFINISQMIACVGQQNVE 711

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF+DR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT
Sbjct: 712 GKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 771

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL----- 791
           ++TGY+ RRL+KA+ED+ ++YD +VRN+ G +++FLYG+DGMD   +E +  + +     
Sbjct: 772 SETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIEFLYGEDGMDAVWIESQKLDSMKMKTK 831

Query: 792 NFDRLLM 798
            FDR+ M
Sbjct: 832 EFDRMYM 838


>gi|307595331|ref|YP_003901648.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta distributa DSM
           14429]
 gi|307550532|gb|ADN50597.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta distributa DSM
           14429]
          Length = 891

 Score =  554 bits (1427), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 294/700 (42%), Positives = 428/700 (61%), Gaps = 26/700 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+P+ +    +++ D+D E+L       RPE  I+T + VPP  +RPS+ ++  Q +E+D
Sbjct: 190 LDPMKIRERLEKIPDSDLELLGWDPKFARPEWAILTVLPVPPPQVRPSIQLETGQRSEDD 249

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVP-FSMQVARP 201
           +T +L  I++ N  L+  +     +      W+ LQ  VA Y N+++  +P    +  RP
Sbjct: 250 LTHKLVDIVRVNEKLRTAIDSGAPSSVVDQLWDLLQYHVATYFNNELPNLPPVKHRSGRP 309

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV+++ RTVISPDPNL I EV +PI +A+ILT P  V+
Sbjct: 310 LKTLAQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLSINEVGVPIDVAKILTVPMTVT 369

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
           + NIE  RQ + NGP+ +PGA  + YPDG    L Y + R +LA +L  G IV+RHL +G
Sbjct: 370 EWNIEMARQLVLNGPEVWPGANYVVYPDGRRVDLRYFRDRRELANKLAPGFIVERHLMNG 429

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D+VLFNRQPSLHRMS+M H  R++P RT R + +VC PYNADFDGDEMN+HVPQ EEAR 
Sbjct: 430 DIVLFNRQPSLHRMSMMGHIVRVLPGRTFRLHLAVCPPYNADFDGDEMNLHVPQNEEARA 489

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF-SLMCCYMGDGMD 439
           EA  LM VQN++ TP+ G  ++ + QD++T  +L+TRKDTF ++     L+     DG  
Sbjct: 490 EAKTLMLVQNHIITPRYGGPIIGARQDYITGGYLLTRKDTFVNKELLMYLLAAANYDG-- 547

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
             ++  PAI+ P ELWTGKQ+ S+L+    N   +V  T  +++  +             
Sbjct: 548 --EIDEPAIMHPKELWTGKQVVSMLLPKDLN---WVQPTAIKESCKDPY----------- 591

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
              C  D ++   N  + +G L K ++G    D L+ V+++ YG       ++ + +   
Sbjct: 592 --NCYTDEYIVVVNGYMATGVLDKKSIGAEQVDSLWHVVVKRYGNDYARKWVDSVLRALL 649

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
           R++   GF++GID ++  +E  ++  KL  E+       I+ + EGKL+ +PG    +TL
Sbjct: 650 RFLDLRGFTMGIDSLEMPRESYNELEKLYEESERKVFDYIQRFREGKLEAEPGLTVEETL 709

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E  IT  L+R+RE A +     +       IM++ G++GS +NI+QMVA +GQQ++ G R
Sbjct: 710 ENDITIELSRVREAAARVAEKYINKDGEAYIMAKTGARGSIVNITQMVAMIGQQTIRGER 769

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
              GF  R+  HF      P AKGFV N+F  GL+  EFFFH  GGR+GLVDTAV+TA +
Sbjct: 770 FKRGFTGRTTAHFEPGDLGPMAKGFVRNNFKVGLTPVEFFFHAAGGRDGLVDTAVRTAQS 829

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           GYM RRLI AL+D+ + YD +VRNA G I+Q  Y +DG+D
Sbjct: 830 GYMQRRLINALQDIYVAYDGTVRNASGSIIQTKYAEDGID 869


>gi|390939171|ref|YP_006402909.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus fermentans
           DSM 16532]
 gi|390192278|gb|AFL67334.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus fermentans
           DSM 16532]
          Length = 886

 Score =  553 bits (1426), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 291/720 (40%), Positives = 438/720 (60%), Gaps = 23/720 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVL---YLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  V    +++++ D ++L       RPE +++T + VPP ++RPSV+++    +E+D
Sbjct: 180 LTPSEVRGRLEKISNDDVKLLGGDPSDARPEWMVLTVLPVPPRSVRPSVLLETGIRSEDD 239

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+TN  L++ +     +      WE LQ  +  Y +++V GVP +  +  + 
Sbjct: 240 LTHKLVDIIRTNNRLREHVEGGAPSAIIEDEWELLQYHITTYFDNEVPGVPVAKHRSGKT 299

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L G  QRLKGK+GRFR NL GKRV+++ RTVISPDP+L I EV +P  +A+ILT PERV+
Sbjct: 300 LKGIAQRLKGKEGRFRNNLRGKRVDFSARTVISPDPSLSINEVGVPEDVAKILTIPERVT 359

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
             NIE++R+ + NGP+K+PGA  I  PDG    L    R   A  L+ G IV+RHL DGD
Sbjct: 360 PWNIEEMRKLVLNGPEKWPGANYIVRPDGRKISLKFVDRKAAAESLEPGFIVERHLMDGD 419

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +VLFNRQPSLHR+S+M H  R++P++T R N  VC PYNADFDGDEMN+HVPQ+EEAR E
Sbjct: 420 IVLFNRQPSLHRISVMAHVVRVLPYKTFRLNLLVCPPYNADFDGDEMNLHVPQSEEARAE 479

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
           A LLM V+ ++ TP+ G  ++   QD+++ ++++T K T  D+     +    G    + 
Sbjct: 480 ARLLMLVERHILTPRYGGPIIGGLQDYISGAYILTSKTTLLDKDDVVDLLSSTG---YKG 536

Query: 442 DLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET 501
           +LP PAILKP  LWTGKQL S+ +    N +         K  S   +R        I+ 
Sbjct: 537 ELPEPAILKPRALWTGKQLVSLFLPKDFNYK------RNSKIGSAAALRC-------IDE 583

Query: 502 MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARW 561
            CP+D  V  +N  L+ G L KA++G    + L   L+++YG       M+R+ K+  R 
Sbjct: 584 DCPHDSLVIIKNGVLLEGVLDKASIGREEPESLVHWLIKEYGEDYGRMFMDRVYKMFIRM 643

Query: 562 IGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEA 621
              +G ++    +   +E  ++  ++I+   +     I +Y  G+L  +PG    +TLE 
Sbjct: 644 SEKYGLTMSYTHLTLPEEARNRLSEIIAGKKKEVEELISKYRRGELLARPGKTVKETLED 703

Query: 622 VITDILN-RIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
            I DIL+ ++ +   +         N  +IM++ G++G+P+N++QM A +GQQ+V G+R 
Sbjct: 704 EIIDILSKKLLDSVAEVITPYFTLVNPVVIMARTGARGNPVNLTQMAALLGQQTVRGKRL 763

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
             G++ R+LPHF  +   P A+GF+A+ F  GL+  E FFH   GREGL+DTAV+T+ +G
Sbjct: 764 TRGYLGRALPHFKPEDLGPEARGFIASGFVHGLNPVEMFFHAAAGREGLIDTAVRTSQSG 823

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           YM RRLI AL+DL ++YD SVR   G IVQ LYG+DG+DP  M+   G+ +N DR++ K+
Sbjct: 824 YMQRRLINALQDLRVEYDGSVRLTTGEIVQLLYGEDGVDP--MKSDHGKSVNIDRVIEKI 881


>gi|302348974|ref|YP_003816612.1| DNA-directed RNA polymerase subunit A [Acidilobus saccharovorans
           345-15]
 gi|302329386|gb|ADL19581.1| DNA-directed RNA polymerase subunit A [Acidilobus saccharovorans
           345-15]
          Length = 889

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 304/727 (41%), Positives = 440/727 (60%), Gaps = 35/727 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P +V    +++ D D E+L     S RPE  ++T + VPP+++RPS+ M+     E+D
Sbjct: 183 LTPSDVRERLEKIPDDDVELLGWDPKSARPEWAVLTVLPVPPLSVRPSITMESGSRAEDD 242

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSL--AGWETLQVEVAQYINSDVRGV-PFSMQVA 199
           +T  L  I++ N  L+  +  ++SA +S+    W+ LQ  +A YI++++  +   S +  
Sbjct: 243 LTHALAEIVRQNERLKNFI--SSSAPESMIEEAWQALQNVIAAYIDNELPNIYQLSHRGR 300

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           + L    QRLKGK+GR RGNL+GKRV ++ RTVISPDP + I EV +PI +A+ILT P  
Sbjct: 301 KQLKTLAQRLKGKEGRLRGNLNGKRVNFSSRTVISPDPLISINEVGVPIEVAKILTVPMV 360

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMI-RYPDGTARVL-YGKFRNQLAVELKSGCIVDRHL 317
           V+  NIE+ R+ + NGP ++PGA ++ +  +G    L Y +   QLA  L+ G IV+RHL
Sbjct: 361 VTKFNIEEARKYVLNGPYQWPGATIVYKKREGVKLDLRYQRNLRQLAESLEVGDIVERHL 420

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            DGD+VLFNRQPSLHRMSIM H+ R+MP RT R N  VC PYNADFDGDEMN+HVP+ EE
Sbjct: 421 IDGDIVLFNRQPSLHRMSIMGHKVRVMPGRTFRLNLLVCAPYNADFDGDEMNLHVPRLEE 480

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLM---CCYM 434
           AR EAL L+ V+N++ TP+ G  ++   QD+++ ++L+T K T +DR A   +     Y 
Sbjct: 481 ARAEALNLLLVENHILTPRYGGPIIGGRQDYISGAYLLTVKTTLFDREAVGRLLAAASYS 540

Query: 435 GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
           G+      LP PAILKP  LWTGKQL S+ +    N      +   +       ++ +G+
Sbjct: 541 GE------LPEPAILKPRPLWTGKQLVSLFLPSDFNFSGRAKINAGD-------LKCDGE 587

Query: 495 EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
           +       C  D +V  R   L+ G   K T+G    + +   +  +YG  A    ++ +
Sbjct: 588 D-------CFFDSYVVIRRGRLLEGVFDKNTIGAEQPESVLHYIALEYGNAAARQLLDTM 640

Query: 555 AKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
            ++  R +   GFSI I D++  KE  DK  K+  E  E     I++Y  G L++ PG  
Sbjct: 641 YRMFIRMLELRGFSISISDIEIPKEARDKIAKMTEEAKEDVMKLIEQYRNGTLEIIPGRT 700

Query: 615 AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
             ++LE  I   L ++R+DAGK  +G +   N+  IM++ G++GS INI+QM A +GQQ+
Sbjct: 701 LEESLELKIIQRLQKLRDDAGKTAIGYMNPFNNAFIMARTGARGSDINITQMAAMLGQQT 760

Query: 675 VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
           V GRR   GF  R+LPHF      P A+GFV ++F  GL   E FFH  GGREGLVDTA+
Sbjct: 761 VRGRRIVRGFRTRTLPHFRPGDLSPEARGFVVSNFRDGLKPHEVFFHAAGGREGLVDTAL 820

Query: 735 KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFD 794
           KT+ +GYM RRLI AL+DL + YD +VR++   I+QF YG+DG+DP       G+ +N D
Sbjct: 821 KTSQSGYMQRRLINALQDLHVAYDGTVRDSQDNIIQFRYGEDGVDPQKT--YHGKAVNVD 878

Query: 795 RLLMKVK 801
           RL+ KVK
Sbjct: 879 RLIEKVK 885


>gi|124028420|ref|YP_001013740.1| DNA-directed RNA polymerase subunit A' [Hyperthermus butylicus DSM
           5456]
 gi|123979114|gb|ABM81395.1| DNA-directed RNA polymerase subunit A' [Hyperthermus butylicus DSM
           5456]
          Length = 881

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 300/720 (41%), Positives = 434/720 (60%), Gaps = 25/720 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           LNP+ +    +R+ + D  +L     S RPE +++T + VPPI +RPS++++     E+D
Sbjct: 177 LNPLEIRSRLERVPNDDARLLGFDPESARPEWMVLTVLPVPPIHVRPSIVLETGIRAEDD 236

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSL-AGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           +T +L  I++TN  L+ EL+++ +    +   W  LQ  VA Y ++++  +P +     R
Sbjct: 237 LTHKLADIVRTNERLR-ELIDSGAPQTLIDEHWTLLQYHVATYFDNELPRIPVARHRGGR 295

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL G  QRLKGK+GRFRGNLSGKRV+Y+ RTVISPDPN+ I EV +PI +A+ LT    V
Sbjct: 296 PLKGLAQRLKGKEGRFRGNLSGKRVDYSARTVISPDPNISINEVGVPIEIAKTLTVRTPV 355

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           +  NIE++R+ + NGPD++PGA  +   DG    L    R ++A  L+ G  V+RHL DG
Sbjct: 356 TPWNIEEMRRYVLNGPDRWPGANYVITKDGRKIDLRYADRKRIAEMLEPGWFVERHLRDG 415

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D+VLFNRQPSLHRMSIM H  +++P +T R N  VC PYNADFDGDEMN+HVP+TEEA+ 
Sbjct: 416 DIVLFNRQPSLHRMSIMAHIVKVLPGKTFRLNLLVCPPYNADFDGDEMNLHVPRTEEAQA 475

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           EA  LM VQ ++ +P+ G  ++   QD+++ ++L+T K T   +     +    G    R
Sbjct: 476 EARELMLVQYHILSPRYGGPIIGGLQDYISGAYLLTSKATLLTQEDVIDLLSAAG---YR 532

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
            ++P PAIL P + WTGKQL S+ +    N         K K   +  I    DE     
Sbjct: 533 GEIPEPAILSPKKRWTGKQLVSLFLPKDFNF--------KGKARVSAGIFMCEDE----- 579

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             C ND F+  +  EL++G L K  +G    + +   L+++YG        + + K+  R
Sbjct: 580 -WCWNDSFIVIKKGELLTGVLDKKAIGAEQPENMMHWLVKEYGTDYARYVYDNMFKMFIR 638

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           +I   GF++ +DDV    E  +K   ++ E  E     I++Y +GKL+  PG    +TLE
Sbjct: 639 FIEKRGFTMTVDDVALPPEAHEKIKVVLREAEERVKELIEQYRQGKLEPVPGRTLEETLE 698

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
             I D L+  R+      +  L   N+  IM++ G++G+ +NI+QM A +GQQSV G R 
Sbjct: 699 LRILDALSDARKKVEDIVVNYLDPFNNVFIMARTGARGNELNITQMAALLGQQSVRGERI 758

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
             G+ DR LPHF      PAA+GFV +SFY GL+  E FFH  GGREGLVDTAV+T+ +G
Sbjct: 759 YRGYRDRFLPHFKPGDLGPAARGFVYHSFYLGLTPVEVFFHAAGGREGLVDTAVRTSQSG 818

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           YM RRLI AL+DL ++YD +VR   G IVQF YG+DG+DP  M+   G+ +N DR + +V
Sbjct: 819 YMQRRLINALQDLRVEYDGTVRTPYGEIVQFSYGEDGVDP--MKSAHGKAVNIDREIERV 876


>gi|170291135|ref|YP_001737951.1| DNA-directed RNA polymerase subunit A [Candidatus Korarchaeum
            cryptofilum OPF8]
 gi|170175215|gb|ACB08268.1| DNA-directed RNA polymerase subunit A [Candidatus Korarchaeum
            cryptofilum OPF8]
          Length = 1324

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 388/1282 (30%), Positives = 630/1282 (49%), Gaps = 156/1282 (12%)

Query: 3    NPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESL 62
            NP  E +   +L++ +  +    A K  KCP CG     V+                  L
Sbjct: 137  NP--EKVVDDELVREVRDQVKVYAKKHKKCPHCGAPVHRVE------------------L 176

Query: 63   QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITN 119
            +E    I    E +         L P  +  + ++++D D  ++       RPE  ++T 
Sbjct: 177  EEVYKFIVKEPEPRR--------LWPNEIRDILEKISDDDSLLIGFDPKKARPEWAVLTV 228

Query: 120  IAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQV 179
            + VPP+  RPS+ ++  + +E+D+T  L  I++ N  L              + W+ LQ 
Sbjct: 229  LLVPPLTARPSIYLETGERSEDDLTHILVEILKANRKLNNSKKVGAPVSMVESEWDHLQY 288

Query: 180  EVAQYINSDVRGVPFSMQ--VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDP 237
             V+ + N+   G+P +MQ    RPL    QRL GK+GR R NL GKRV ++ RTVISPDP
Sbjct: 289  WVSVFFNNATAGMPVAMQKGTRRPLKSLFQRLSGKEGRLRKNLIGKRVNFSARTVISPDP 348

Query: 238  NLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA---RV 294
             + I EV +P+ +A +LT PE V+++NIEK+++ +  GPD+YPGA  IR    T    ++
Sbjct: 349  MIDIDEVGVPVEIAMVLTVPEYVNENNIEKMKELVMRGPDEYPGANAIRKGGVTPISLKI 408

Query: 295  LYGKFRNQL---AVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRF 351
            L  K ++ L   A +L+ G IV+RHL DGD V+FNRQPSLH++S++ HR +++P  T R 
Sbjct: 409  LQRKGKDALREAAEQLEPGDIVERHLMDGDYVIFNRQPSLHKLSMLGHRVKVLPGATFRL 468

Query: 352  NESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTS 411
            + +VC PYNADFDGDEMN+HVPQ  +   E   LMGV+ N+ +P+ G  ++ + QDF+T+
Sbjct: 469  HPAVCVPYNADFDGDEMNLHVPQILDGSVEVRELMGVKYNMLSPRTGGSIIGARQDFITA 528

Query: 412  SFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANM 471
             ++IT+KD  +D+   + +    G       LP PAI +P  LWTGKQL S+L+    N 
Sbjct: 529  LYMITKKDALFDKNEATRILSRAGI----TQLPEPAIKRPKRLWTGKQLISMLLPKDLNF 584

Query: 472  RVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNK 531
                   VK     +                C  DG+V  R  +L+SG L    +G   K
Sbjct: 585  EGIAKSAVKASECKD--------------PSCLGDGYVLIREGKLLSGVLDDNIVGTLVK 630

Query: 532  D--GLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDV----QPKKE------ 579
                L  VL+RDYG       +N+L K++++ +  +G +    ++    + K+E      
Sbjct: 631  GRLTLIDVLIRDYGEDVAIEFLNKLLKIASKEVLLYGITNSPKELMIPEEAKREIEEIYS 690

Query: 580  -LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKAC 638
             + ++  +LI        + I    E  L++       Q LE  I   ++          
Sbjct: 691  NMKEEVTRLIRSRPITRKITIYRTKEELLRI---MREEQMLEFDIVQTMDSFWGKVSSVI 747

Query: 639  MGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR--------RAPNGFIDRSLP 690
               +  +++  IM++ G++GS  N++Q+V  VGQQ V  R        R   G+ DR L 
Sbjct: 748  SKYIDPKSNVSIMAKTGARGSMANLAQIVGQVGQQKVKTRIGFVLTSGRPRKGYKDRVLS 807

Query: 691  HFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKAL 750
            +F R    P A+GFV NS+ SGL+  EF FH M  RE L+D   +T D+GY  RR+  +L
Sbjct: 808  YFQRGDLSPEARGFVKNSYVSGLNPAEFIFHAMSSRESLIDKGRRTEDSGYFYRRVANSL 867

Query: 751  EDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQR 810
            +D+ + YD +VR++ G I+QF +G DG DP  +     EP+N +R++ K         +R
Sbjct: 868  KDVYVSYDETVRDSMGHIIQFKFGGDGYDPTKL--FRNEPVNLERIIRKY---VKEERKR 922

Query: 811  YLSPQQVSEIVEKQLAAYGKESCSEAFLN-SLRKFFEGQQDKLDKKIKFVEDIGWDDKSQ 869
             +S  ++ E+++            EA L  SL     G + K                  
Sbjct: 923  GVSKDKIEELLK------------EANLPLSLADAIHGARPK------------------ 952

Query: 870  ILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFH 929
                         E +L+  I      +   +VE  T IG I AQSI EP TQM L+TFH
Sbjct: 953  -------------ESELKEIIAELKEGFERAKVEVLTPIGLISAQSIAEPTTQMVLRTFH 999

Query: 930  FAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDN-ENAARVVKGRIEKTLLG 986
              G+ +M++T GV R KE++  A   STP +   L  +C ++  N  ++++   E  +  
Sbjct: 1000 APGLLAMDVTHGVERFKELVFYAS-TSTPTMKIYLKQKCQEDISNLRKILRNLKELRVRD 1058

Query: 987  QVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDF 1046
             + +        RL    I  D   +++  + +   +   +I++     +K + +++ D 
Sbjct: 1059 LIEEYAIDNFNYRLT---IKPDKRALENNMIPMERFL---NIIRATAKGMKGE-VELEDD 1111

Query: 1047 RKL-EIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKK 1105
            R + +++   ++ K    L S    +    V G++ ++R  +   E + R        K+
Sbjct: 1112 RIIVDLYEAAERDKPLQTLRSWSYRILDKPVSGVRGIKRAWVETVETDGR--------KE 1163

Query: 1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
            Y +   G+ L AV+    +D  +T +N   E+++ LGIEAAR CI +E+   ++  G+ +
Sbjct: 1164 YIIRTSGSNLAAVLSMSCVDIARTITNDCKEIERVLGIEAARNCIFNELASILEEQGLEV 1223

Query: 1166 DKRHMMLLADLMTFRGEVLGI------TRFGIQKMDKSVLMLASFEKTADHLFNASVNGR 1219
            D+R++ L+AD+MT+ G +  I         G     K+ L   +FE T   + N +  G 
Sbjct: 1224 DRRYISLVADIMTYSGTIEAIRLQAAGVSSGFFSEMKTPLSKMAFEWTTHVILNTARRGE 1283

Query: 1220 DDRIEGVSECIIMGIPMPLGTG 1241
             ++I G  + +IMG   P+GTG
Sbjct: 1284 VNKILGPLDALIMGQTPPIGTG 1305


>gi|218884685|ref|YP_002429067.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus
           kamchatkensis 1221n]
 gi|218766301|gb|ACL11700.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus
           kamchatkensis 1221n]
          Length = 886

 Score =  551 bits (1419), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 291/720 (40%), Positives = 438/720 (60%), Gaps = 23/720 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVL---YLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  V    +++++ D ++L       RPE +++T + VPP ++RPSV+++    +E+D
Sbjct: 180 LTPSEVRGRLEKISNDDVKLLGGDPNDTRPEWMVLTVLPVPPRSVRPSVLLETGIRSEDD 239

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+TN  L++ +     +      WE LQ  +  Y +++V G+P +  +  + 
Sbjct: 240 LTHKLVDIIRTNNRLREHVEGGAPSAIIEDEWELLQYHITTYFDNEVPGLPVAKHRSGKT 299

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L G  QRLKGK+GRFR NL GKRV+++ RTVISPDP+L I EV +P  +A+ILT PERV+
Sbjct: 300 LKGIAQRLKGKEGRFRNNLRGKRVDFSARTVISPDPSLSINEVGVPEDVAKILTIPERVT 359

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
             NIE++R+ + NGP+K+PGA  I  PDG    L    R   A  L+SG IV+RHL DGD
Sbjct: 360 PWNIEEMRKLVLNGPEKWPGANYIVRPDGRKISLKFVDRKAAAESLESGFIVERHLMDGD 419

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +VLFNRQPSLHR+S+M H  R++P++T R N  VC PYNADFDGDEMN+HVPQ+EEAR E
Sbjct: 420 IVLFNRQPSLHRISVMAHVVRVLPYKTFRLNLLVCPPYNADFDGDEMNLHVPQSEEARAE 479

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
           A LLM V+ ++ TP+ G  ++   QD+++ ++++T K T  D+     +    G    + 
Sbjct: 480 ARLLMLVERHILTPRYGGPIIGGLQDYISGAYILTSKTTLLDKDDVVDLLSSTG---YKG 536

Query: 442 DLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET 501
           +LP PAILKP  LWTGKQL S+ +    N +         K  S   +R        I+ 
Sbjct: 537 ELPEPAILKPRALWTGKQLVSLFLPKDFNYK------RNSKIGSAAALRC-------IDE 583

Query: 502 MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARW 561
            CP+D  V  RN  L+ G L KA++G    + L   L+++YG       M+R+ K+  R 
Sbjct: 584 DCPHDSLVIIRNGVLLEGVLDKASIGREEPESLVHWLIKEYGEDYGRMFMDRVYKMFIRM 643

Query: 562 IGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEA 621
              +G ++    +   +E  ++  ++I+   +     I +Y  G+L  +PG    +TLE 
Sbjct: 644 SEKYGLTMSYTHLTLPEEARNRLSEIIAGKKKEVEELISKYKRGELLARPGKTVEETLED 703

Query: 622 VITDILN-RIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
            I DIL+ ++ +   +         N  +IM++ G++G+P+N++QM A +GQQ+V G+R 
Sbjct: 704 EIIDILSKKLLDSVAEVITPYFTLVNPVVIMARTGARGNPVNLTQMAALLGQQTVRGKRL 763

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
             G++ R+L HF  +   P A+GF+A+ F  GL+  E FFH   GREGL+DTAV+T+ +G
Sbjct: 764 TRGYLGRALSHFKPEDLGPEARGFIASGFVHGLNPVEMFFHAAAGREGLIDTAVRTSQSG 823

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           YM RRLI AL+DL ++YD SVR   G IVQ LYG+DG+DP  M+   G+ +N DR++ K+
Sbjct: 824 YMQRRLINALQDLRVEYDGSVRLTTGEIVQLLYGEDGVDP--MKSDHGKSVNVDRVIEKI 881


>gi|290983563|ref|XP_002674498.1| RNA polymerase II [Naegleria gruberi]
 gi|284088088|gb|EFC41754.1| RNA polymerase II [Naegleria gruberi]
          Length = 1757

 Score =  551 bits (1419), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 307/715 (42%), Positives = 436/715 (60%), Gaps = 33/715 (4%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
            L +FKR+   D E+L   +   RPE +I+T + +PP  +RPSV    +  +E+D+T +L
Sbjct: 182 ALQIFKRIPAEDLELLGFDKDNARPEWMILTCLPIPPPQVRPSVHHGSADRSEDDLTHKL 241

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPF-SMQVARPLSGFV 206
             II+ NA++Q+         +       LQ   A Y+N++  GVP  + +  RPL    
Sbjct: 242 ADIIKANAAIQKNEKSGTPLHQMEEMVRMLQYHCATYVNNEYPGVPTATTKSGRPLKSIR 301

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
           QRLKGK+GR RGNL GKRV+++ RTVI+ DPN+ I +V +P  +A  +T PE V+  N E
Sbjct: 302 QRLKGKEGRVRGNLMGKRVDFSARTVITADPNIDIDQVGVPRTVASNMTVPEIVTPFNFE 361

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGT---ARVLYGKFRNQLAVELKSGCIVDRHLEDGDVV 323
           +L + + NGP  YPGA+ +   DGT    R   GK  +Q  ++L+ G  V+RHL+DGDV+
Sbjct: 362 RLNELVTNGPLTYPGAKYVIREDGTRIDLRFASGKANDQ--IQLEYGYKVERHLQDGDVI 419

Query: 324 LFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAL 383
           LFNRQPSLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMN+HVPQ+ + + E L
Sbjct: 420 LFNRQPSLHKMSMMGHRIKVMPYSTFRMNLSVTTPYNADFDGDEMNLHVPQSLQTKAELL 479

Query: 384 LLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG----DGMD 439
            LM V  N+ TP++   ++A  QD L ++  +TR+D F   A   +M C M     DG  
Sbjct: 480 ELMMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFI--AKDLMMNCLMHLIDFDG-- 535

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
              LP PAILKP  LWTGKQLF+ L+ P  N+         E T S     T  D++  +
Sbjct: 536 --KLPVPAILKPKPLWTGKQLFTFLL-PKVNL---------ENTSSTHEDLT--DKKDHL 581

Query: 500 ETMCPN-DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
           +   P  D  V     EL+SG L K +LG+ +   L  +++ + G +     + +  ++ 
Sbjct: 582 DHDIPEFDTKVLIDRGELVSGVLDKKSLGSSH-GSLIHIIVNEKGVNEGKKFLGQCQRVI 640

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
             W+ N GFSIGI D    K   ++  + I +  +   + +K+  EGKL+ + G    Q+
Sbjct: 641 NHWLINRGFSIGIGDTIADKATMEQIEETIRKAEKDVKLIVKDAQEGKLRAEAGRTIQQS 700

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            E  +  +LN+ REDAG     SL   N+   M   GSKGS INISQ++ACVGQQ+V G+
Sbjct: 701 FENQVNKVLNKAREDAGNKAKKSLKDDNNIKSMVTAGSKGSYINISQIIACVGQQNVEGK 760

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R P GF +R+LPHF +    P ++GFVANS+  GL+  EFFFHTMGGREGL+DTAVKT++
Sbjct: 761 RIPYGFRNRTLPHFAQDDHGPESRGFVANSYLRGLTPQEFFFHTMGGREGLIDTAVKTSE 820

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
           TGY+ RRLIKA+ED+ ++YD +VR+A G +VQFLYG+DGMD   +E +S + +N 
Sbjct: 821 TGYIQRRLIKAMEDIMVKYDGTVRDAQGNVVQFLYGEDGMDAHKVESQSIDIMNL 875



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 209/442 (47%), Gaps = 65/442 (14%)

Query: 867  KSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLK 926
            +S    +V  K   +T++  +  +     R+     + G  +G++ AQSIGEP TQMTL 
Sbjct: 1032 RSTFSSKVVLKELCLTQEAFDFLVGEIRMRFHNCLAQPGEMVGSVAAQSIGEPATQMTLN 1091

Query: 927  TFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTL 984
            TFHFAGV+S N+T GVPR+KE++N AK I TP +T  L  E   +   A++VK  +E T 
Sbjct: 1092 TFHFAGVSSKNVTLGVPRLKELLNVAKNIKTPGLTIYLNNEYIGDFEKAKMVKEDLEYTT 1151

Query: 985  LGQVAKSIKIVMTSRLASIVIALD------------------------------------ 1008
            LG V  +  IV     A+ VI  D                                    
Sbjct: 1152 LGHVTAATSIVYDPEPANSVIEEDREFIEELLEELKDTAVLDSTTLNPWSLRFELDKMMM 1211

Query: 1009 -------------METIQDAHLCINADIVKESIVQTPKI----KLKQQHIKVLD------ 1045
                          E  Q+   C  +D   + ++   +I    K K++  +V        
Sbjct: 1212 SDTLTMAQVAKKIQEEFQNDITCFYSDDNADKLILVVRIHKDDKEKEKDAQVAKDPSDEV 1271

Query: 1046 FRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENG--EK 1103
             RKLE    ++ S + F      N+L  + +KG K +++V + E E +K+    +G    
Sbjct: 1272 LRKLEE-EDIENSTVEFLRRLESNMLNELALKGYKDLKKVFLRE-ENDKKVFSSSGVATV 1329

Query: 1104 KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGM 1163
            K++ L  EG  L AV+    +D   T SN + E+   LGIEA R  ++ E+ + ++  G 
Sbjct: 1330 KQWVLDTEGCNLLAVLSHPYVDHTITTSNDVNEILDVLGIEACRNALMREMRKVIEFDGS 1389

Query: 1164 SIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRI 1223
             ++ RH+ +L D+MT RG ++ ITR GI + D   LM  SFE+T + L  A+     D +
Sbjct: 1390 YVNYRHLAILCDVMTHRGGLMAITRHGINRSDTGPLMRCSFEETVEILIEAATFADTDTL 1449

Query: 1224 EGVSECIIMGIPMPLGTGILKI 1245
            +GVS  +++G   P+GTG   +
Sbjct: 1450 KGVSANVMVGQLAPIGTGCFGL 1471


>gi|342306129|dbj|BAK54218.1| DNA-directed RNA polymerase subunit A' [Sulfolobus tokodaii str. 7]
          Length = 880

 Score =  550 bits (1418), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 302/727 (41%), Positives = 439/727 (60%), Gaps = 38/727 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++    +R+ D+D E+L       RPE +I+T + VPPI IRPS+ ++     E+D
Sbjct: 175 LTPSDIRERLERIPDSDYELLGYDPKYSRPEWMILTVLPVPPITIRPSITIESGIRAEDD 234

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N  L++ +            W+ LQ  V+ Y ++++ G+P +  +  RP
Sbjct: 235 LTHKLVDIIRINERLKESIDAGAPQLIIEDLWDLLQYHVSTYFDNEIPGIPPAKHRSGRP 294

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRGNLSGKRV+++ RTVISPDPN+ I EV +P+ +A+ LT PERV+
Sbjct: 295 LRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNISIDEVGVPVAIAKTLTVPERVT 354

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
             NIE++RQ + NGP+K+PGA  +  PDG    L Y K R +LA  L  G IV+RHL DG
Sbjct: 355 KMNIERMRQYVINGPEKWPGANYVIRPDGRRIDLRYVKDRKELASSLTPGYIVERHLIDG 414

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D+VLFNRQPSLHR+S+M H+ +++P RT R N  VC PYNADFDGDEMN+HVPQ+EEA  
Sbjct: 415 DIVLFNRQPSLHRISMMGHKVKVLPGRTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIA 474

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCC---YMGDG 437
           EA  +M V  N+ TP+ G  ++   QD+++ ++L+T K T   R   + +     +MG+ 
Sbjct: 475 EAKEIMLVHRNIITPRYGGPIMGGAQDYISGAYLLTVKTTLLTREEVTTILGVTDFMGE- 533

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
                +  PAIL P E +TGKQ+ S+ +    N     N++   +   N++         
Sbjct: 534 -----IGEPAILAPREYYTGKQIVSLFLPKDFNFHGQANISKGFRACKNEV--------- 579

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
                CP+D ++  +N  L+ G L K  +GN   + +   L+R+YG       M+ + KL
Sbjct: 580 -----CPHDSYIVIKNGILLEGVLDKKAIGNQQPESILHWLVREYGTEYGRWVMDNVFKL 634

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVK----IKEYNEGKLQLKPGC 613
             R+I   GF++ +DDV     +  +  K I E  EV   K    IK+YNEG L+L PG 
Sbjct: 635 FIRFIELRGFTMTLDDVT----IPPQAFKEIDEQIEVAYKKVEELIKQYNEGTLELIPGR 690

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
            A ++LE  I + L+++R+ AG      L   N+  IM+  G++GS +NI+QM A +GQQ
Sbjct: 691 TAEESLEDHILETLDQLRKVAGDIATKYLDPFNNVYIMAVTGARGSELNITQMTAMLGQQ 750

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
           SV G R   G++ R+LPHF      P A+GFV NSF  GL+  E FFH  GGREGLVDTA
Sbjct: 751 SVRGERIKRGYMTRTLPHFKPGDISPDARGFVHNSFTRGLTPIEMFFHAAGGREGLVDTA 810

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
           VKT+ +GYM RRLI AL DL ++YD +VR+  G +++  YG+D + P  M    G+ ++ 
Sbjct: 811 VKTSQSGYMQRRLINALSDLRVEYDGTVRSLYGEVIELAYGEDEVHP--MYSSHGKTVDV 868

Query: 794 DRLLMKV 800
           +R++ +V
Sbjct: 869 NRIIERV 875


>gi|15920465|ref|NP_376134.1| DNA-directed RNA polymerase subunit A' [Sulfolobus tokodaii str. 7]
          Length = 884

 Score =  550 bits (1418), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 302/727 (41%), Positives = 439/727 (60%), Gaps = 38/727 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++    +R+ D+D E+L       RPE +I+T + VPPI IRPS+ ++     E+D
Sbjct: 179 LTPSDIRERLERIPDSDYELLGYDPKYSRPEWMILTVLPVPPITIRPSITIESGIRAEDD 238

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N  L++ +            W+ LQ  V+ Y ++++ G+P +  +  RP
Sbjct: 239 LTHKLVDIIRINERLKESIDAGAPQLIIEDLWDLLQYHVSTYFDNEIPGIPPAKHRSGRP 298

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRGNLSGKRV+++ RTVISPDPN+ I EV +P+ +A+ LT PERV+
Sbjct: 299 LRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNISIDEVGVPVAIAKTLTVPERVT 358

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
             NIE++RQ + NGP+K+PGA  +  PDG    L Y K R +LA  L  G IV+RHL DG
Sbjct: 359 KMNIERMRQYVINGPEKWPGANYVIRPDGRRIDLRYVKDRKELASSLTPGYIVERHLIDG 418

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D+VLFNRQPSLHR+S+M H+ +++P RT R N  VC PYNADFDGDEMN+HVPQ+EEA  
Sbjct: 419 DIVLFNRQPSLHRISMMGHKVKVLPGRTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIA 478

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCC---YMGDG 437
           EA  +M V  N+ TP+ G  ++   QD+++ ++L+T K T   R   + +     +MG+ 
Sbjct: 479 EAKEIMLVHRNIITPRYGGPIMGGAQDYISGAYLLTVKTTLLTREEVTTILGVTDFMGE- 537

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
                +  PAIL P E +TGKQ+ S+ +    N     N++   +   N++         
Sbjct: 538 -----IGEPAILAPREYYTGKQIVSLFLPKDFNFHGQANISKGFRACKNEV--------- 583

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
                CP+D ++  +N  L+ G L K  +GN   + +   L+R+YG       M+ + KL
Sbjct: 584 -----CPHDSYIVIKNGILLEGVLDKKAIGNQQPESILHWLVREYGTEYGRWVMDNVFKL 638

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVK----IKEYNEGKLQLKPGC 613
             R+I   GF++ +DDV     +  +  K I E  EV   K    IK+YNEG L+L PG 
Sbjct: 639 FIRFIELRGFTMTLDDVT----IPPQAFKEIDEQIEVAYKKVEELIKQYNEGTLELIPGR 694

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
            A ++LE  I + L+++R+ AG      L   N+  IM+  G++GS +NI+QM A +GQQ
Sbjct: 695 TAEESLEDHILETLDQLRKVAGDIATKYLDPFNNVYIMAVTGARGSELNITQMTAMLGQQ 754

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
           SV G R   G++ R+LPHF      P A+GFV NSF  GL+  E FFH  GGREGLVDTA
Sbjct: 755 SVRGERIKRGYMTRTLPHFKPGDISPDARGFVHNSFTRGLTPIEMFFHAAGGREGLVDTA 814

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
           VKT+ +GYM RRLI AL DL ++YD +VR+  G +++  YG+D + P  M    G+ ++ 
Sbjct: 815 VKTSQSGYMQRRLINALSDLRVEYDGTVRSLYGEVIELAYGEDEVHP--MYSSHGKTVDV 872

Query: 794 DRLLMKV 800
           +R++ +V
Sbjct: 873 NRIIERV 879


>gi|327311709|ref|YP_004338606.1| DNA-directed RNA polymerase subunit alpha [Thermoproteus uzoniensis
           768-20]
 gi|326948188|gb|AEA13294.1| DNA-directed RNA polymerase subunit alpha [Thermoproteus uzoniensis
           768-20]
          Length = 884

 Score =  550 bits (1418), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 303/799 (37%), Positives = 454/799 (56%), Gaps = 56/799 (7%)

Query: 9   LRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASA 68
           L  T+L + I++K    A++   CP CGY                 R+KV      F   
Sbjct: 136 LLATNLHEKILRK----AAERTTCPHCGY----------------KRNKV-----RFERP 170

Query: 69  ITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPI 125
               +E++    V    L+P  +L    ++ ++D E+L +     RPE  I+  + VPP 
Sbjct: 171 YNFYEETETGALVK---LDPETILERLVKVPNSDLELLGVDPTVARPEWGILRTLPVPPP 227

Query: 126 AIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYI 185
            +RPS+ ++    +E+D+T +L  I++ N  L+  L            W+ LQ   A Y 
Sbjct: 228 HVRPSIQLETGIRSEDDLTHKLVDIMRMNEKLKIALETGAPTNVIDNLWDLLQYHTATYF 287

Query: 186 NSDVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEV 244
           ++++ G+P +  +  RPL G  QRLKGK+GRFRG+LSGKRV ++ RTVISPDPNL I EV
Sbjct: 288 DNELPGIPLAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSINEV 347

Query: 245 AIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGT-ARVLYGKFRNQL 303
            +PI +A+ILT PERV++ NI+ LRQ +  GP+ +PGA  +  P+G    + Y K R QL
Sbjct: 348 GVPIDIAKILTVPERVTEWNIDDLRQAVMRGPETWPGANYVITPEGRRVDLRYVKDRKQL 407

Query: 304 AVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADF 363
           A +L  G IV+RH+ DGD+ LFNRQPSLHR+S+M H  R++P RT R + +VC PYNADF
Sbjct: 408 AEKLAPGWIVERHIRDGDIALFNRQPSLHRVSMMGHIVRVLPGRTFRIHLAVCPPYNADF 467

Query: 364 DGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYD 423
           DGDEMN+H+PQTEEAR EA  LM VQ ++ TP+ G  ++ + QD++  ++L++RK T   
Sbjct: 468 DGDEMNLHIPQTEEARAEARTLMLVQEHIVTPRYGGAIIGARQDYIIGAYLLSRKTTLLT 527

Query: 424 RAAFSLMCCYMGDGMD-RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEK 482
           +        Y+   M    DLP PAI+ PVELWTGKQ+ S+ +    N   +V  T  + 
Sbjct: 528 KKE----AAYLAGAMKLEGDLPEPAIMHPVELWTGKQIISMALPKDLN---WVQPTAFKS 580

Query: 483 TYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDY 542
                               C  D ++   N  +++G L K ++G    D L+  + RDY
Sbjct: 581 ACKEPY-------------TCETDEWIIIINGNMVTGTLDKKSIGAEQVDSLWHRIARDY 627

Query: 543 GAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEY 602
            +      ++   ++  R++   GFSIG+D +    E   + GK+I          I+ Y
Sbjct: 628 PSDVARKWLDSSLRVFLRFLDLRGFSIGLDSLYIPSEAVREVGKIIDSGINKALELIELY 687

Query: 603 NEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPIN 662
            EGKL+  PG    +TLE  + ++L+++R DA       +   +   +M++ G++GS  N
Sbjct: 688 REGKLEAMPGYTVQETLENRLAEVLSKVRSDAEGVVERYIDKNSEAYLMAKTGARGSLTN 747

Query: 663 ISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHT 722
           I QMVA +GQQ++ G R   G+  R+LPHFP     P + GFV++SF  GL+  E+FFH 
Sbjct: 748 IVQMVATLGQQTIRGERIKRGYRTRTLPHFPVGDIGPFSGGFVSSSFVKGLTPVEYFFHA 807

Query: 723 MGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPAN 782
            GGR+GL+DTAV+TA +GYM RR+I AL+D  + YD +VR   G ++Q LYGDDG D + 
Sbjct: 808 AGGRDGLIDTAVRTAQSGYMQRRIINALQDAYVAYDGTVRYGSGLLLQPLYGDDGTDVSK 867

Query: 783 MEGKSGEPLNFDRLLMKVK 801
            +   G+P N + + + ++
Sbjct: 868 SD--HGKPANVNIMRLYIR 884


>gi|336041421|gb|AEH95288.1| RNA polymerase II largest subunit [Malawimonas californiana]
          Length = 1014

 Score =  550 bits (1417), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 307/749 (40%), Positives = 450/749 (60%), Gaps = 32/749 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  V  + K ++D D + +  +    RPE ++ T + VPP A+RPS++MD +++ E+
Sbjct: 117 VLTPEKVYNILKNVSDEDSKAMGFNPVLARPEWMLTTVLPVPPPAVRPSIVMDSARAAED 176

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ--VA 199
           D+T +L  I++ N +L+ +L    +        + LQ  +A  +++++ G+P S Q    
Sbjct: 177 DLTYKLSDIVKANNNLKLQLERGAAPHIIQEFTQLLQYHIATMLDNEMPGMPVSSQRGSG 236

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RPL    QRL+GK GR RGNL GKRV+++ RTVI+PDPNL + EV +P  +A  LTYPE 
Sbjct: 237 RPLKSIRQRLRGKHGRIRGNLMGKRVDFSARTVITPDPNLSVNEVGVPRTIALNLTYPEV 296

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLE 318
           V+ +NI ++RQ I+NGP K+PGA+ I   DGT   L Y K  ++L   L  G  V+RH++
Sbjct: 297 VTPYNIARMRQLIENGPMKHPGAKYILRDDGTRTDLRYAKKPSEL--HLDYGYKVERHVQ 354

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGDVV+FNRQPSLH+MS+M HR RI+PW T R N SV  PYNADFDGDEMNMHV Q+ E 
Sbjct: 355 DGDVVIFNRQPSLHKMSMMGHRIRILPWSTFRLNLSVTTPYNADFDGDEMNMHVAQSPET 414

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
           R E   +M V   + +P+  + ++   QD L  + L T++DTF +R     +  ++    
Sbjct: 415 RAEIEEIMMVPRQIVSPQANKPVMGIVQDSLLGTKLFTKRDTFIERDLVMNVLMWLSTFE 474

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            +V  P PA+LKP  LWTGKQ+FS+LI P       VNL  K    S +    E +EE  
Sbjct: 475 GKV--PKPAMLKPKVLWTGKQIFSMLIPP-------VNLLRK----SAQAPERELNEEFT 521

Query: 499 IET--MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
                +C     V   N E+ISG + K T+G+ +   L  V+  ++G  AT   ++ +  
Sbjct: 522 YTDTRVC---SLVCIENGEVISGIICKQTVGSSS-GSLVHVVWNEHGHEATRNFLDSVQA 577

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           +  +W+ + GFS+GI D    KE   +  + I+         IK+     L+ +PG    
Sbjct: 578 VVNQWLLSRGFSVGIGDTIADKETMQQITRTIAAAKAQVASLIKQAQNHNLEPQPGRTLM 637

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           +T E+ +   LN  R+ AGK+   SL   N+   M   GSKGS INI+QM+ACVGQQ+V 
Sbjct: 638 ETFESKVNSALNTARDKAGKSAEQSLRSSNNVKEMVTAGSKGSFINIAQMIACVGQQNVE 697

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF +R+LPHF      P A+GFV NS+  GL+  EFFFH MGGREGL+DTAVKT
Sbjct: 698 GKRIPYGFRNRTLPHFVAADYSPEARGFVENSYLRGLNPQEFFFHAMGGREGLIDTAVKT 757

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           ++TGY+ RRLIKA+ED+ ++YD +VRN+ G ++QFLYG+DG D   +E +  + +  + +
Sbjct: 758 SETGYIQRRLIKAMEDVMVRYDGTVRNSLGDVIQFLYGEDGFDGTAIETQFLDTMFMNDM 817

Query: 797 LMKVK-----ATCPPAGQRYLSPQQVSEI 820
            +++      A    + + YL P+ + +I
Sbjct: 818 YVEIDVRQTFAQTRDSPENYLLPEVLDDI 846


>gi|77176711|gb|ABA64470.1| DNA-dependent RNA polymerase II largest subunit [Cyanophora
           paradoxa]
          Length = 1000

 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 320/781 (40%), Positives = 454/781 (58%), Gaps = 43/781 (5%)

Query: 51  IIHDRSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS- 109
           I+ D  K+T    EF   +   +E K        IL P  V  +FKR++D DC  + L  
Sbjct: 91  IMKDGLKLTA---EFKKTLDENQEKK-------IILMPEQVYNIFKRISDEDCRHMGLDP 140

Query: 110 --ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSA 167
              RP+   IT++ VPP A+RP + M+  Q  E+D+T +L  I++ NA L++    A  A
Sbjct: 141 RWARPDWFCITHLPVPPAAVRPGIAMNSVQRAEDDLTSKLMDIVRANAQLRKNEQNAAPA 200

Query: 168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVE 226
                    LQ  +A Y+++++ G+P + Q   R L    QRLKGK+GR RGNL GKRV+
Sbjct: 201 HHINELVTQLQYHIATYMDNELPGIPPAQQRSGRALKSICQRLKGKEGRIRGNLMGKRVD 260

Query: 227 YTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIR 286
           ++ RTVI+ DPNL I +V +P  +A  LT PE V+ +N++++ Q I+ GP +YPGAR I 
Sbjct: 261 FSARTVITADPNLGIDQVGVPRSIALNLTTPEIVTPYNMDRMYQLIRAGPTEYPGARYII 320

Query: 287 YPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW 346
             DGT R      R    + L+ G  V+RH++DGD VLFNRQPSLH+MSIM HR ++MP+
Sbjct: 321 RSDGT-RFDLRYVRKASDLHLEPGYRVERHIQDGDYVLFNRQPSLHKMSIMAHRIKVMPY 379

Query: 347 RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQ 406
            T R N SV +PYNADFDGDEMN+HVPQ+ E R EA  ++ V   + +P++   ++   Q
Sbjct: 380 STFRLNLSVTSPYNADFDGDEMNLHVPQSFETRAEASEIIAVPRQIVSPQSNRPVMGIVQ 439

Query: 407 DFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVE--LWTGKQLFSVL 464
           D L +S  +T +DTF ++     +  ++ D  D   LP PAI+K  +   WTGKQLFS  
Sbjct: 440 DTLMASQKMTLRDTFIEKDVIMNIVMHL-DSFDG-RLPIPAIVKSPKGPRWTGKQLFSTF 497

Query: 465 IRPHANM-RVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGK 523
           + P+ N+ R +      E T       + GD ++RIE            N EL+ G + K
Sbjct: 498 L-PNVNVVRFHSTHPDGESTDI-----SPGDTQVRIE------------NGELLCGIVCK 539

Query: 524 ATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK 583
            TLG  +   L  V++ ++G        N   K+   W+ N GFS+GI D        + 
Sbjct: 540 RTLGT-SAGSLIHVIMNEHGPDTARVFFNMTQKVINNWLINVGFSVGIGDTIADDRTMES 598

Query: 584 KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLP 643
               + +  E  +  + E  +GK++L+PG    ++ E+ +  ILN+ R+ AGK   GSL 
Sbjct: 599 INSTLKKAKEEVDTVVIEAQQGKMELQPGRSFIESFESKVNRILNQARDAAGKTAQGSLQ 658

Query: 644 WRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKG 703
             N+   M   GSKGS INISQM ACVGQQ+V G+R P GF +R+LPHF +    P ++G
Sbjct: 659 RSNNVKTMLTSGSKGSFINISQMFACVGQQNVEGKRIPFGFRNRTLPHFTKDDYGPESRG 718

Query: 704 FVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRN 763
           FV NS+  GL+  EFFFH MGGREGL+DTAVKT++TGY+ RRLIKA+ED+ +QYDN+ RN
Sbjct: 719 FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLIKAMEDVMVQYDNTTRN 778

Query: 764 AGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM----KVKATCPPAGQRYLSPQQVSE 819
           + G I+QFLYG+DGM    +EG+  E L  D   M    K+       G+ +L P   +E
Sbjct: 779 SMGEIIQFLYGEDGMAGEFIEGQRLESLELDDKEMEKKFKMNLDDRNFGEGFLDPDVAAE 838

Query: 820 I 820
           I
Sbjct: 839 I 839


>gi|83320446|gb|ABC02850.1| RNA polymerase II largest subunit, partial [Mortierella
           verticillata]
          Length = 1016

 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 301/705 (42%), Positives = 420/705 (59%), Gaps = 30/705 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P +   + KR++D D E + LS    RPE +I+T + +PP+A+RPS+ MDGS + E+D
Sbjct: 131 LTPSDAYHILKRISDEDIEAMGLSPEFARPEWMIMTVLPIPPLAVRPSIQMDGSSTGEDD 190

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRG-VPFSMQVARP 201
           +T +L  II+TNA + +   +   A       + LQ  VA Y+++D+ G  P + +  RP
Sbjct: 191 LTHKLFAIIKTNADVYRCAQDGTPAHLIQQHEQLLQYHVATYMDNDIAGQPPAAHKNGRP 250

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL I EV +P  +AR LTYPE V+
Sbjct: 251 LKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEVGVPRSIARTLTYPELVT 310

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
            +NI+KL++ ++NGP ++PGA  +   DG    L     N+  V L+ G  V+RH+ DGD
Sbjct: 311 PYNIDKLQKLVRNGPTEHPGAVYVIRDDGQRIDLRW---NKREVPLQLGWKVERHINDGD 367

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           VV+FNRQPSLH+MS+M H+ R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+ E R E
Sbjct: 368 VVIFNRQPSLHKMSMMGHKIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVETRAE 427

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMD 439
              +  V   + +P++ + ++   QD L      T++D F  +     +  ++   +G  
Sbjct: 428 ITEICMVPRQIVSPQSNKPVMGIVQDTLCGVRKFTKRDCFLTKEMVMNLVMWVPGWEGF- 486

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
              LPTPAILKP  LWTG+Q+ S++I    N   Y         +S      E D     
Sbjct: 487 ---LPTPAILKPKPLWTGRQMLSMIIPKGINCICY---------HSTHPDNEESD----- 529

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
             + P D  V   N ELI G + K T+G     GL  V++  +G        N    +  
Sbjct: 530 --ISPGDTKVIVENGELICGIVCKKTVGTSG-GGLIHVIMNQHGPEVAKTFFNGCQTVVN 586

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
            W+  HGFSIGI D    +        +IS      N  I +  + KL+ KPG    +T 
Sbjct: 587 YWLLQHGFSIGIGDTVADRSTVMTITSIISNATNNVNDLIIQAQQDKLECKPGMTLRETF 646

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E+++   LN  R+DAGK    SL   N+   M   GSKGS IN+SQM ACVGQQ+V G+R
Sbjct: 647 ESLVNRALNTARDDAGKMAQQSLREDNNVKQMVISGSKGSFINVSQMTACVGQQNVEGKR 706

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+T
Sbjct: 707 IPFGFKYRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAET 766

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           GY+ RRL+KALED+ ++YD +VRN+ G ++QF YG+DGMD  ++E
Sbjct: 767 GYIQRRLVKALEDVMVKYDGTVRNSLGHVIQFCYGEDGMDACHVE 811


>gi|21280517|gb|AAM45151.1|AF395110_1 RNA polymerase II largest subunit [Naegleria gruberi]
          Length = 1590

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 306/715 (42%), Positives = 435/715 (60%), Gaps = 33/715 (4%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
            L +FKR+   D E+L   +   RPE +I+T + +PP  +RPSV    +  +E+D+T +L
Sbjct: 138 ALQIFKRIPAEDLELLGFDKDNARPEWMILTCLPIPPPQVRPSVHHGSADRSEDDLTHKL 197

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPF-SMQVARPLSGFV 206
             II+ NA++Q+         +       LQ   A Y+N++  GVP  + +  RPL    
Sbjct: 198 ADIIKANAAIQKNEKSGTPLHQMEEMVRMLQYHCATYVNNEYPGVPTATTKSGRPLKSIR 257

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
           QRLKGK+GR RGNL GKRV+++ RTVI+ DPN+ I +V +P  +A  +T PE V+  N E
Sbjct: 258 QRLKGKEGRVRGNLMGKRVDFSARTVITADPNIDIDQVGVPRTVASNMTVPEIVTPFNFE 317

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGT---ARVLYGKFRNQLAVELKSGCIVDRHLEDGDVV 323
           +L + + NGP  YPGA+ +   DGT    R   GK  +Q  ++L+ G  V+RHL+DGDV+
Sbjct: 318 RLNELVTNGPLTYPGAKYVIREDGTRIDLRFASGKANDQ--IQLEYGYKVERHLQDGDVI 375

Query: 324 LFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAL 383
           LFNRQPSLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMN+HVPQ+ + + E L
Sbjct: 376 LFNRQPSLHKMSMMGHRIKVMPYSTFRMNLSVTTPYNADFDGDEMNLHVPQSLQTKAELL 435

Query: 384 LLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG----DGMD 439
            L  V  N+ TP++   ++A  QD L ++  +TR+D F   A   +M C M     DG  
Sbjct: 436 ELTMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFI--AKDLMMNCLMHLIDFDG-- 491

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
              LP PAILKP  LWTGKQLF+ L+ P  N+         E T S     T  D++  +
Sbjct: 492 --KLPVPAILKPKPLWTGKQLFTFLL-PKVNL---------ENTSSTHEDLT--DKKDHL 537

Query: 500 ETMCPN-DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
           +   P  D  V     EL+SG L K +LG+ +   L  +++ + G +     + +  ++ 
Sbjct: 538 DHDIPEFDTKVLIDRGELVSGVLDKKSLGSSH-GSLIHIIVNEKGVNEGKKFLGQCQRVI 596

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
             W+ N GFSIGI D    K   ++  + I +  +   + +K+  EGKL+ + G    Q+
Sbjct: 597 NHWLINRGFSIGIGDTIADKATMEQIEETIRKAEKDVKLIVKDAQEGKLRAEAGRTIQQS 656

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            E  +  +LN+ REDAG     SL   N+   M   GSKGS INISQ++ACVGQQ+V G+
Sbjct: 657 FENQVNKVLNKAREDAGNKAKKSLKDDNNIKSMVTAGSKGSYINISQIIACVGQQNVEGK 716

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R P GF +R+LPHF +    P ++GFVANS+  GL+  EFFFHTMGGREGL+DTAVKT++
Sbjct: 717 RIPYGFRNRTLPHFAQDDHGPESRGFVANSYLRGLTPQEFFFHTMGGREGLIDTAVKTSE 776

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
           TGY+ RRLIKA+ED+ ++YD +VR+A G +VQFLYG+DGMD   +E +S + +N 
Sbjct: 777 TGYIQRRLIKAMEDIMVKYDGTVRDAQGNVVQFLYGEDGMDAHKVESQSIDIMNL 831



 Score =  173 bits (438), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 131/420 (31%), Positives = 201/420 (47%), Gaps = 72/420 (17%)

Query: 885  QLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 944
            +LE+    C +       + G  +G++ AQSIGEP TQMTL TFHFAGV+S N+T GVPR
Sbjct: 1014 KLELRFHNCLA-------QPGEMVGSVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPR 1066

Query: 945  IKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            +KE++N AK I TP +T  L  E   +   A++VK  +E T LG V  +  IV     A+
Sbjct: 1067 LKELLNVAKNIKTPGLTIYLNNEYIGDFEKAKMVKEDLEYTTLGHVTAAASIVYDPEPAN 1126

Query: 1003 IVIALD-------------------------------------------------METIQ 1013
             VI  D                                                  E  Q
Sbjct: 1127 SVIEEDREFIEELLEELKDTAVLDSTTLNPWSLRFELDKMMMSDTLTMAQVAKKIQEEFQ 1186

Query: 1014 DAHLCINADIVKESIVQTPKI----KLKQQHIKVLD------FRKLEIFPPVDKSKIHFE 1063
            +   C  +D   + ++   +I    K K++  +V         RKLE    ++ S + F 
Sbjct: 1187 NDITCFYSDDNADKLILVVRIHKDDKEKEKDAQVAKDPSDEVLRKLEE-EDIENSTVEFL 1245

Query: 1064 LYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENG--EKKKYRLLVEGTGLQAVMGA 1121
                 N+L  + +KG K +++V + E E +K+    +G    K++ L  EG  L AV+  
Sbjct: 1246 RRLESNMLNELALKGYKDLKKVFLRE-ENDKKVFSSSGVATVKQWVLDTEGCNLLAVLSH 1304

Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
              +D   T SN + E+   LGIEA R  ++ E+ + ++  G  ++ RH+ +L D+MT RG
Sbjct: 1305 PYVDHTITTSNDVNEILDVLGIEACRNALMREMRKVIEFDGSYVNYRHLAILCDVMTHRG 1364

Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             ++ ITR GI + D   LM  SFE+T + L  A+     D ++GVS  +++G   P+GTG
Sbjct: 1365 GLMAITRRGINRSDTGPLMRCSFEETVEILIEAATFADTDTLKGVSANVMVGQLAPIGTG 1424


>gi|83320422|gb|ABC02838.1| RNA polymerase II largest subunit, partial [Batrachochytrium
           dendrobatidis]
          Length = 985

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 309/738 (41%), Positives = 435/738 (58%), Gaps = 31/738 (4%)

Query: 55  RSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---R 111
           RS + + +  F +    TK+        T  + P   L L + ++D D   + LS    R
Sbjct: 89  RSAILKIMANFKA----TKDEDGKHEAQTIEMTPEKTLTLLRSISDQDATDMGLSADWAR 144

Query: 112 PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSL 171
           PE +IIT + VPP+ +RPS+ MDG+   E+D+T +L  II+ N SL++   E   A    
Sbjct: 145 PEWMIITTLPVPPMPVRPSISMDGAGRGEDDLTHKLMDIIKANISLKRHETEGAPAHIVN 204

Query: 172 AGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
                LQ  VA Y+N+D+  +P +MQ + RPL     RLKGK+GR RGNL GKRV+++ R
Sbjct: 205 EFENLLQFHVATYMNNDIANLPQAMQKSGRPLKSIAARLKGKEGRLRGNLMGKRVDFSAR 264

Query: 231 TVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDG 290
           TVI+ DPNL I +V +P  +AR LT+PE V+ +NI+ L+Q +QNGP+++PGA+ +   +G
Sbjct: 265 TVITGDPNLSIDQVGVPRSIARNLTFPETVTPYNIDILQQMVQNGPNEHPGAKYVIRDNG 324

Query: 291 TARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 350
             RV     +    + L+ G  V+RHL D D ++FNRQPSLH+MS+M HR +IMP+ T R
Sbjct: 325 -ERVDLRYSKRGGDIHLQYGYKVERHLLDNDYIIFNRQPSLHKMSMMGHRVKIMPYSTFR 383

Query: 351 FNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLT 410
            N SV +PYNADFDGDEMNMHVPQ+ E R E   L  V   + +P+    ++   QD L 
Sbjct: 384 LNLSVTSPYNADFDGDEMNMHVPQSHETRAEIQGLCMVPLQIVSPQKNAPVMGIVQDTLC 443

Query: 411 SSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHAN 470
                +++DTF  R     +  ++ D  D + +PTPAILKP+ LWT KQ+ S LI P  N
Sbjct: 444 GIRKFSKRDTFLKRDLMMNLLMWVPD-WDGI-IPTPAILKPIPLWTAKQIIS-LILPKIN 500

Query: 471 M-RVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNG 529
           +   +      EKT                  + P D  V   + EL+ G L K T+G+ 
Sbjct: 501 LVGFHAAHPDNEKT-----------------DISPGDTKVLIEDGELLMGILCKRTVGS- 542

Query: 530 NKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLIS 589
           + +G+    + + G   T G  N   ++   W+  +GFSIGI D    ++  +     I+
Sbjct: 543 SANGIIHTSMNELGPDVTMGFFNGTQRVINYWLLQNGFSIGIGDTIADRQTMETINDTIA 602

Query: 590 ENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPL 649
                 N  I++     L++ PG    Q+ E+++   LNR R++AGK+   SL   N+  
Sbjct: 603 HAKREVNKIIQKAQTDTLEVLPGMTIRQSFESLVNQELNRARDNAGKSAEKSLKEYNNVK 662

Query: 650 IMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSF 709
            M   GSKGS INISQM ACVGQQ+V G+R P GF DR+LPHF R    P ++GFV NS+
Sbjct: 663 QMVVSGSKGSFINISQMTACVGQQNVEGKRIPFGFKDRTLPHFTRDDHSPESRGFVENSY 722

Query: 710 YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIV 769
             GL+  EFFFH MGGREGL+DTAVKTA+TGY+ RRL+KALED+  +YD +VRNA G IV
Sbjct: 723 LRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNALGDIV 782

Query: 770 QFLYGDDGMDPANMEGKS 787
           QF YG+DGM+ A +E ++
Sbjct: 783 QFTYGEDGMEGAKVEKQT 800


>gi|328772047|gb|EGF82086.1| hypothetical protein BATDEDRAFT_86817 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1797

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 309/738 (41%), Positives = 435/738 (58%), Gaps = 31/738 (4%)

Query: 55  RSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---R 111
           RS + + +  F +    TK+        T  + P   L L + ++D D   + LS    R
Sbjct: 186 RSAILKIMANFKA----TKDEDGKHEAQTIEMTPEKTLTLLRSISDQDATDMGLSADWAR 241

Query: 112 PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSL 171
           PE +IIT + VPP+ +RPS+ MDG+   E+D+T +L  II+ N SL++   E   A    
Sbjct: 242 PEWMIITTLPVPPMPVRPSISMDGAGRGEDDLTHKLMDIIKANISLKRHETEGAPAHIVN 301

Query: 172 AGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 230
                LQ  VA Y+N+D+  +P +MQ + RPL     RLKGK+GR RGNL GKRV+++ R
Sbjct: 302 EFENLLQFHVATYMNNDIANLPQAMQKSGRPLKSIAARLKGKEGRLRGNLMGKRVDFSAR 361

Query: 231 TVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDG 290
           TVI+ DPNL I +V +P  +AR LT+PE V+ +NI+ L+Q +QNGP+++PGA+ +   +G
Sbjct: 362 TVITGDPNLSIDQVGVPRSIARNLTFPETVTPYNIDILQQMVQNGPNEHPGAKYVIRDNG 421

Query: 291 TARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 350
             RV     +    + L+ G  V+RHL D D ++FNRQPSLH+MS+M HR +IMP+ T R
Sbjct: 422 -ERVDLRYSKRGGDIHLQYGYKVERHLLDNDYIIFNRQPSLHKMSMMGHRVKIMPYSTFR 480

Query: 351 FNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLT 410
            N SV +PYNADFDGDEMNMHVPQ+ E R E   L  V   + +P+    ++   QD L 
Sbjct: 481 LNLSVTSPYNADFDGDEMNMHVPQSHETRAEIQGLCMVPLQIVSPQKNAPVMGIVQDTLC 540

Query: 411 SSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHAN 470
                +++DTF  R     +  ++ D  D + +PTPAILKP+ LWT KQ+ S LI P  N
Sbjct: 541 GIRKFSKRDTFLKRDLMMNLLMWVPD-WDGI-IPTPAILKPIPLWTAKQIIS-LILPKIN 597

Query: 471 M-RVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNG 529
           +   +      EKT                  + P D  V   + EL+ G L K T+G+ 
Sbjct: 598 LVGFHAAHPDNEKT-----------------DISPGDTKVLIEDGELLMGILCKRTVGS- 639

Query: 530 NKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLIS 589
           + +G+    + + G   T G  N   ++   W+  +GFSIGI D    ++  +     I+
Sbjct: 640 SANGIIHTSMNELGPDVTMGFFNGTQRVINYWLLQNGFSIGIGDTIADRQTMETINDTIA 699

Query: 590 ENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPL 649
                 N  I++     L++ PG    Q+ E+++   LNR R++AGK+   SL   N+  
Sbjct: 700 HAKREVNKIIQKAQTDTLEVLPGMTIRQSFESLVNQELNRARDNAGKSAEKSLKEYNNVK 759

Query: 650 IMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSF 709
            M   GSKGS INISQM ACVGQQ+V G+R P GF DR+LPHF R    P ++GFV NS+
Sbjct: 760 QMVVSGSKGSFINISQMTACVGQQNVEGKRIPFGFKDRTLPHFTRDDHSPESRGFVENSY 819

Query: 710 YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIV 769
             GL+  EFFFH MGGREGL+DTAVKTA+TGY+ RRL+KALED+  +YD +VRNA G IV
Sbjct: 820 LRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNALGDIV 879

Query: 770 QFLYGDDGMDPANMEGKS 787
           QF YG+DGM+ A +E ++
Sbjct: 880 QFTYGEDGMEGAKVEKQT 897



 Score =  119 bits (297), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 100/177 (56%), Gaps = 6/177 (3%)

Query: 1069 NVLPMVIVKGIKTVERVVIAEKEKEKRKVKENG----EKKKYRLLVEGTGLQAVMGAEGI 1124
            N+L  + + GIK + RV I+E +     V E+G    +  +Y L  +GT L  V+   G+
Sbjct: 1284 NILNDITLCGIKNISRVFISESKYTS--VDESGVIRPDNPEYFLETDGTNLIQVLAHHGV 1341

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
            D  +T SN   E+   LGIEA R  I+ E  + ++  G  ++ RH+ LL D+MT RG ++
Sbjct: 1342 DAVRTYSNFACEIMDVLGIEATRAAILKETRKVIEFDGSYVNYRHLALLCDIMTQRGSIM 1401

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             I+R GI + D   L  ASFE+T D L  A+  G  D  +GVSE +++G   PLGTG
Sbjct: 1402 AISRHGINRTDAGALARASFEETVDLLLEAAGLGELDDCKGVSENVMLGQLAPLGTG 1458



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 2/102 (1%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G I AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEIIN AK 
Sbjct: 1070 ARFNQAIVHPGEMVGTIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAKN 1129

Query: 955  ISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKI 994
            I TP +   L  E   +   A+ +   IE T L ++  S +I
Sbjct: 1130 IKTPRLEIYLDPEYRRSMEMAKKIHSTIEHTTLRKLTASTEI 1171


>gi|374633177|ref|ZP_09705544.1| DNA-directed RNA polymerase subunit A'' [Metallosphaera
           yellowstonensis MK1]
 gi|373524661|gb|EHP69538.1| DNA-directed RNA polymerase subunit A'' [Metallosphaera
           yellowstonensis MK1]
          Length = 886

 Score =  547 bits (1410), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 297/720 (41%), Positives = 437/720 (60%), Gaps = 24/720 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P+++    +++ D+D E+L     S RPE +I+T + VPPI IRPS++++     E+D
Sbjct: 181 LTPLDIRERLEKIPDSDVELLGYDPKSSRPEWIILTVLPVPPITIRPSIMIESGIRAEDD 240

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  I++ N  L++ +            W+ LQ  VA Y ++++ G+P S  +  RP
Sbjct: 241 LTHKLVDIVRINERLKESIDAGAPQLIVEDLWDLLQYHVATYFDNEIPGLPTSKHRSGRP 300

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRGNLSGKRV+++ RTVISPDPN+ I EV +P  +A+ILT PE+V+
Sbjct: 301 LRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNISIDEVGVPYDIAQILTVPEKVT 360

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
             N+++LR+ + NGP+K+PGA  +  PDG    L Y K R +LA  L    +V+RHL +G
Sbjct: 361 KWNLDRLREYVINGPEKWPGANYVVRPDGRRIDLRYVKDRKELASTLAPNFVVERHLING 420

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           DVV+FNRQPSLHR+S+M HR R++P RT R N  VC PYNADFDGDEMN+HVPQ+EEA  
Sbjct: 421 DVVIFNRQPSLHRISMMGHRVRVLPGRTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIA 480

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           E   LM V  N+ TP+ G  ++ S QD+++ ++L+T K T    +    +   +G     
Sbjct: 481 ETRELMTVHRNILTPRYGGPIIGSAQDYISGAYLLTVKTTLLTESEVQTI---LGVADIS 537

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
             L  PAIL P  L+TGKQ+ S  +    N     N++          +R+  DE+    
Sbjct: 538 KALGEPAILAPKRLYTGKQILSYFLPEDFNFHGPANISSG--------VRSCKDED---- 585

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             C +D F+  +  +L+ G L K  LGN   + +   L+R+Y        M+ L K+  R
Sbjct: 586 --CAHDSFLVIKQGKLLMGVLDKKALGNQQPESVLHWLVREYSEDYVLWLMDNLFKVFLR 643

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           ++  HG ++ + DV    E S+K  +   +  +     I+ Y +GKL+  PG    +TLE
Sbjct: 644 FVELHGLTMTLSDVTIPPEASEKIAERAKDARKKVLELIELYKQGKLEPIPGRTMEETLE 703

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
           + I D L+++R +AG+     L   N+  IM++ G++GS +NI+QM A +GQQSV G R 
Sbjct: 704 SYILDTLDKLRNEAGEIATAYLDPFNNAYIMARTGARGSVLNITQMAAMLGQQSVRGERI 763

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
             G+ DR+LPHF R    P A+GF+ +SF SGL+  E FFH  GGREGLVDTAV+T+ +G
Sbjct: 764 KRGYSDRTLPHFRRGDISPEARGFIYSSFRSGLNPVEMFFHAAGGREGLVDTAVRTSQSG 823

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           YM RRLI AL DL ++YD +VR   G ++Q +YG DG+ P  M    G+ ++ DR++ +V
Sbjct: 824 YMQRRLINALSDLRMEYDGTVRTLYGEVIQTIYGGDGVHP--MRSAHGKTVDVDRIIERV 881


>gi|126460695|ref|YP_001056973.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum calidifontis
           JCM 11548]
 gi|126250416|gb|ABO09507.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum calidifontis
           JCM 11548]
          Length = 884

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 298/771 (38%), Positives = 439/771 (56%), Gaps = 48/771 (6%)

Query: 14  LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTK 73
           L +++ +K    A++   CP CGY                 R+KV      F       +
Sbjct: 137 LAQNLQEKIKKKAAERATCPHCGY----------------KRNKV-----RFERPYYFYE 175

Query: 74  ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPS 130
           E++   N A   L+P  +     ++ + D E+L ++    RPE  I+  + VPP  +RPS
Sbjct: 176 ETE---NGALVKLDPETLRERLAKVPNDDLELLGINPVVARPEWAILKVLPVPPPHVRPS 232

Query: 131 VIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVR 190
           + ++    +E+D+T +L  II+ N  L+  L            W+ LQ  VA Y ++++ 
Sbjct: 233 IQLETGIRSEDDLTHKLVDIIRMNEKLKIALETGAPTNVVDNLWDLLQYHVATYFDNELP 292

Query: 191 GVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIR 249
           G+P +     RPL G  QRLKGK+GRFRG+LS KRV ++ RTVISPDP++ I EV +PI 
Sbjct: 293 GIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSSKRVNFSARTVISPDPHISINEVGVPID 352

Query: 250 MARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELK 308
           +A++LT PERV+  NI+ LR+ +  GP+ +PGA  +  P+G    L Y K R  LA  L 
Sbjct: 353 IAKVLTVPERVTTWNIDALREYVLRGPEAWPGANYVITPEGRRIDLRYVKDRRALAERLA 412

Query: 309 SGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEM 368
            G IV+RHL DGD+VLFNRQPSLHR+S+M H  +++P RT R + +VC PYNADFDGDEM
Sbjct: 413 PGWIVERHLVDGDIVLFNRQPSLHRVSMMGHLVKVLPGRTFRLHLAVCPPYNADFDGDEM 472

Query: 369 NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 428
           N+HVPQTEEAR EA  LM V+ ++ TP+ G  ++ + QD++  ++L++ K TF  +   +
Sbjct: 473 NLHVPQTEEARAEARTLMLVEKHIITPRYGGAIIGARQDYIIGAYLLSHKSTFLTKKEVA 532

Query: 429 LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKL 488
            +   +G G    D P PAIL PVELWTGKQ+ S  +    N        V+   + +K 
Sbjct: 533 YL---LGAGKSAEDPPEPAILHPVELWTGKQIISHFLPKDLNW-------VQPTAFKSK- 581

Query: 489 IRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
                    +    C  D ++   N  L+ G L K ++G    D L+  + RDY      
Sbjct: 582 --------CQDAYTCDGDEWIIVINGNLVKGVLDKKSIGAEQVDSLWHRIARDYPPEVAG 633

Query: 549 GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
             ++   +L  RW+   GF+ G+D V   KE  D+  KLI    +  +  I+E+  G+L+
Sbjct: 634 RWLDSSLRLFLRWLDLRGFTFGMDSVYLPKEAYDELDKLIESGLKKADELIQEFKSGRLE 693

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
             PG    +T E  IT++L+R+REDA       +   +   +M++ G++GS +NI QMVA
Sbjct: 694 AMPGFTVEETFENKITEVLSRVREDAATVVEKYIRKNSEGYLMAKTGARGSIVNIVQMVA 753

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            +GQQ++ G R   G+  R+LPHFP         GFV + F  GLS  E+FFH   GR+G
Sbjct: 754 TLGQQTIRGERIRRGYRTRTLPHFPVGDIGAYVGGFVKSCFRCGLSPVEYFFHAAAGRDG 813

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           L+DTAV+TA +GYM RRLI AL+D+ + YD +VR +G  ++Q LYG+DG+D
Sbjct: 814 LIDTAVRTAQSGYMQRRLINALQDVYVAYDGTVRFSGSTLLQVLYGEDGVD 864


>gi|83320426|gb|ABC02840.1| RNA polymerase II largest subunit, partial [Hyaloraphidium
           curvatum]
          Length = 1002

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 299/723 (41%), Positives = 433/723 (59%), Gaps = 29/723 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQS--- 138
           ++ P  V  +F+ ++D DC  + LS    RPE +++T + VPP  +RPSV MDG+     
Sbjct: 121 VITPSKVREVFRVISDQDCRDMGLSPEFARPEWMLVTVLPVPPPQVRPSVSMDGASGGMR 180

Query: 139 NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQV 198
           +++D+T +L  I++ N +L++   E + A  +    E LQ  VA  +++++ G+P +MQ 
Sbjct: 181 SQDDLTFKLGDILKANIALKRHDAENSPAHITREFEEILQYHVATMVDNNISGMPQAMQK 240

Query: 199 A-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYP 257
           + RP+    QRLKGK+GR RGNL GKRV+++ RTVI+ DPN+ I EV +P  +AR LT+P
Sbjct: 241 SGRPIKSIRQRLKGKEGRIRGNLMGKRVDFSSRTVITGDPNISIDEVGVPRSIARTLTFP 300

Query: 258 ERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVE-LKSGCIVDRH 316
           E V+ HN+ +L++ ++NG  ++PGA  I    G    L  KF  Q   + L+ G  V+RH
Sbjct: 301 EIVTPHNVARLQELVRNGALEHPGANYIVRQSGDRISL--KFVPQAGDQPLQIGDTVERH 358

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           L+DGD V+FNRQPSLH+MS+M HR +IMP+ T R N SV  PYNADFDGDEMN+H PQ+ 
Sbjct: 359 LQDGDYVIFNRQPSLHKMSMMGHRVKIMPFSTFRLNLSVTTPYNADFDGDEMNLHAPQSY 418

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           E R E   +M V   + +P+  + ++   QD        T +D    R     +C ++ D
Sbjct: 419 ETRAEIKEIMMVPRQIISPQANKPVMGIVQDTFCGIRKFTLRDNMMTRDMVMNICMWIPD 478

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
              +   P PAILKP  LWTGKQL S++I         +N+T K  T+ +       DE 
Sbjct: 479 WDGQP--PPPAILKPQPLWTGKQLMSMVIPSR------INVTGKHSTHPD-------DER 523

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
              + + P D  V   +  +++G L K T+GN +  G+  V++ +YG        N   +
Sbjct: 524 ---DNISPGDTQVVIEDGVVLAGILSKRTVGN-SAGGIIHVIMNEYGPEMAKKFFNGTQR 579

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           +   W+  +GFSIGI D    K    +  +++    E     I    + +L+ +PG    
Sbjct: 580 VVNYWLLQNGFSIGIGDTVADKATMHQINQILKRAKEDVGETIARAQQNQLEPQPGMTIR 639

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           +T E+V+  ILN+ REDAGKA   SL   N+   M   GSKGS INISQM ACVGQQ+V 
Sbjct: 640 ETFESVVNKILNKAREDAGKAATKSLAPFNNAKQMVDAGSKGSEINISQMAACVGQQNVE 699

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF  R+LPHF +  + P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT
Sbjct: 700 GKRIPFGFRLRTLPHFTKDDQSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 759

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           A+TGY+ RRL+KALED+ ++YD +VRN+ G ++QF YG+DGMD   +E +  E L    +
Sbjct: 760 AETGYIQRRLVKALEDVMVKYDGTVRNSLGHVIQFAYGEDGMDAVGVERQDLEILRMSDI 819

Query: 797 LMK 799
             K
Sbjct: 820 SFK 822


>gi|120561241|gb|ABM27005.1| RNA polymerase II largest subunit, partial [Neocallimastix
           frontalis]
          Length = 1004

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 297/711 (41%), Positives = 436/711 (61%), Gaps = 26/711 (3%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L    VL +FK+++D DC  + L+    RPE ++IT + VPP A+RPS+ M G+   E+
Sbjct: 121 VLTAERVLNIFKKISDEDCIDMGLNPNWARPEWMLITVLPVPPPAVRPSISMGGAARGED 180

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  II+ N +L+    + + A         LQ  VA ++++D  G+P +MQ + R
Sbjct: 181 DLTHKLGDIIRANINLRNHEADGSPAHVVNEYEALLQFHVATFMDNDTAGIPQAMQKSGR 240

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL     RLKGK+GR RGNL GKRV+++ RTVI+ DPN+ I +V +P  +AR LT+PE V
Sbjct: 241 PLKAIRARLKGKEGRIRGNLMGKRVDFSARTVITGDPNISIDQVGVPRSIARNLTFPETV 300

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           +  NI++L+Q + NGP+++PGA+ + + D   R+   KF    +V L+ G  V+RH+ DG
Sbjct: 301 TPFNIDELQQLVNNGPNEHPGAKYV-FKDNGDRIDL-KFARSGSVHLQVGYKVERHINDG 358

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D+V+FNRQPSLH+MS+M H+ ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+ E + 
Sbjct: 359 DLVIFNRQPSLHKMSMMGHKIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETKA 418

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           E   +  V   + +P+  + ++   QD L      T++D F  R     +  ++ D  D 
Sbjct: 419 EVQEICMVPKQIVSPQANKPVMGIVQDTLCGIRKFTKRDCFLTRDFVMNIIMWVPD-WDG 477

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           V +P P ILKP+ LWTGKQ+ S++I P  N+  Y +              T  D E    
Sbjct: 478 V-VPPPCILKPIPLWTGKQIMSLII-PKINIVGYHS--------------THPDNED--T 519

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
            + P D  V   N EL++G L K T+G+ +++G+  V++ +YG        N    +   
Sbjct: 520 DISPGDTKVLIENGELLAGILCKKTVGS-SQNGIIHVVMNEYGPETAKLFFNGTQTVVNY 578

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           W+  +GFSIGI D    +   +   K I+   +  N  I +  + KL+ +PG    +T E
Sbjct: 579 WLLQNGFSIGIGDTIADRNTMETINKAIASAKQAVNEVILQAQQCKLECQPGLTIRETFE 638

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
           +++   LN+ R+ AG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R 
Sbjct: 639 SLVNRHLNKARDSAGASAQKSLREYNNVKQMVVSGSKGSFINISQMTACVGQQNVEGKRI 698

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
           P GF  R+LPHF +  + P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+TG
Sbjct: 699 PFGFKYRTLPHFTKDDQSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETG 758

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL 791
           Y+ RRLIK+LED+SI+YD +VRN+ G I+QF YG+DGMD  ++E +  E +
Sbjct: 759 YIQRRLIKSLEDVSIKYDGTVRNSFGHIIQFCYGEDGMDGTSVEKQQLESI 809


>gi|352682852|ref|YP_004893376.1| DNA-directed RNA polymerase subunit A' [Thermoproteus tenax Kra 1]
 gi|350275651|emb|CCC82298.1| DNA-directed RNA polymerase subunit A' [Thermoproteus tenax Kra 1]
          Length = 883

 Score =  544 bits (1402), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 307/793 (38%), Positives = 452/793 (56%), Gaps = 58/793 (7%)

Query: 9   LRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASA 68
           L  ++L + I++K    A++   CP CGY                 R+K+      F   
Sbjct: 135 LLASNLHEKILRK----AAERTTCPHCGY----------------KRNKI-----RFERP 169

Query: 69  ITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPI 125
               +E++     A   L+P  VL    ++ ++D E+L +   S RPE  I+  + VPP 
Sbjct: 170 YNFYEETETG---ALIKLDPETVLERLVKVPNSDLELLGIDPTSARPEWAILRVLPVPPP 226

Query: 126 AIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYI 185
            +RPS+ ++    +E+D+T +L  I++ N  L+  L            W+ LQ  +A Y 
Sbjct: 227 HVRPSIQLETGIRSEDDLTHKLVDIMRMNEKLKIALETGAPTNVIDNLWDLLQYHIATYF 286

Query: 186 NSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEV 244
           ++++ G+P +     RPL G  QRLKGK+GRFRG+LSGKRV ++ RTVISPDPNL I EV
Sbjct: 287 DNELPGIPLAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSINEV 346

Query: 245 AIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQL 303
            +PI +A++LT PERV+  N+E L+Q +  GP+ +PGA  +  P+G    L Y K R QL
Sbjct: 347 GVPIDIAKVLTVPERVTQWNLEDLKQAVMRGPEAWPGANYVITPEGRRIDLRYVKDRKQL 406

Query: 304 AVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADF 363
           A +L  G IV+RH+ DGD+ LFNRQPSLHR+S+M H  R++P RT R + +VC PYNADF
Sbjct: 407 AEKLAPGWIVERHIRDGDIALFNRQPSLHRVSMMGHIVRVLPGRTFRLHLAVCPPYNADF 466

Query: 364 DGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYD 423
           DGDEMN+H+PQTEEAR EA  LM VQ ++ TP+ G  ++ + QD++  ++L++RK T   
Sbjct: 467 DGDEMNLHIPQTEEARAEARTLMLVQEHIVTPRYGGAIIGARQDYIIGAYLLSRKTTLLT 526

Query: 424 R--AAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKE 481
           +  AAF +    + D     +LP PAIL PVELWTGKQ+ S+ +    N   +V  T  +
Sbjct: 527 KKEAAFLVGAMKLED-----ELPEPAILHPVELWTGKQIISMTLPRDFN---WVQPTAFK 578

Query: 482 KTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRD 541
            T                   C  D ++   N  L++G L K ++G    D L+  + RD
Sbjct: 579 STCKEPY-------------TCEKDEWIIIINGNLLAGTLDKKSIGAEQVDSLWHRIARD 625

Query: 542 YGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKE 601
           Y +      ++   +L  R++   GFS+G+D +    E   +  K+I          I+ 
Sbjct: 626 YSSDVARRWLDSSLRLFLRFLDLRGFSMGLDSLNLPDEALHEVDKIIENGINKAMELIEI 685

Query: 602 YNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPI 661
           Y EG+L+  PG    +TLE  + +IL+R+R DA       +  R+   +M++ G++GS  
Sbjct: 686 YREGRLEAAPGYTVQETLENRLAEILSRVRSDAEAVVDRYIDKRSEAYLMAKTGARGSLT 745

Query: 662 NISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFH 721
           NI QMVA +GQQ++ G R   G+  R+LPHFP     P + GFV +SF  GL+  E+FFH
Sbjct: 746 NIVQMVATLGQQTIRGERIKRGYRTRTLPHFPVGDIGPFSGGFVRSSFKRGLTPIEYFFH 805

Query: 722 TMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPA 781
             GGR+GL+DTAV+TA +GYM RR+I AL+D  + YD +VR   G ++Q LYGDDG D +
Sbjct: 806 AAGGRDGLIDTAVRTAQSGYMQRRIINALQDAYVAYDGTVRYGTGLLLQPLYGDDGTDVS 865

Query: 782 NMEGKSGEPLNFD 794
             +   G P N +
Sbjct: 866 KSD--HGRPFNIN 876


>gi|324120538|dbj|BAJ78660.1| RNA polymerase II largest subunit [Euconocephalus varius]
          Length = 1640

 Score =  543 bits (1400), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 355/1022 (34%), Positives = 539/1022 (52%), Gaps = 98/1022 (9%)

Query: 64   EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNI 120
            +  +   H  E      +A   L+   V  + K +TD +C +L +     RP+ +I+T +
Sbjct: 191  DLTAEWKHVNEDSQEKKIA---LSAERVWEILKHITDEECFILGMDPKFARPDWMIVTVL 247

Query: 121  AVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
             VPP+++RP+V+M GS  N++D+T +L  II+ N  L +      +A       + LQ  
Sbjct: 248  PVPPLSVRPAVVMYGSARNQDDLTHKLADIIKANNELIRNEQAGAAAHVISENIKMLQFH 307

Query: 181  VAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
            VA  +++D+ G+P +MQ + +PL     RLKGK+GR RGNL GKRV+++ RTVI+PDPNL
Sbjct: 308  VATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNL 367

Query: 240  KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF 299
            +I +V +P  +A+ +T+PE V+  NI+K+++ ++ G  +YPGA+ I   +G  R+     
Sbjct: 368  RIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIIRDNG-ERIDLRFH 426

Query: 300  RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
                 + L+ G  V+RH+ DGD+V+FNRQP+LH+MS+M HR +++PW T R N S  +PY
Sbjct: 427  PKSSDLHLQCGYKVERHVRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPY 486

Query: 360  NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
            NADFDGDEMN+HVPQ+ E R E   +      + TP+  + ++   QD LT+   +T++D
Sbjct: 487  NADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRD 546

Query: 420  TFYDRAAFS--LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNL 477
             F ++      LM   + DG     +P PAI+KP  LWTGKQ+FS++I  + NM      
Sbjct: 547  VFLEKEQMMNILMFLPIWDG----KMPQPAIMKPKPLWTGKQVFSLIIPGNVNMI----- 597

Query: 478  TVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
                +T+S      + +++   + + P D  V   + EL+ G L K TLG  +   L  +
Sbjct: 598  ----RTHST---HPDDEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGT-SAGSLLHI 649

Query: 538  LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNV 597
               + G          +  +   W+   G SIGI D     +   +  K I +  E    
Sbjct: 650  CFLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIE 709

Query: 598  KIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSK 657
             I++ +  +L+  PG    QT E  +  ILN  R+  G +   SL   N+   M   GSK
Sbjct: 710  VIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSK 769

Query: 658  GSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATE 717
            GS INISQ++ACVGQQ+V G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ +E
Sbjct: 770  GSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 829

Query: 718  FFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDG 777
            FFFH MGGREGL+DTAVKTA+TGY+ RRLIKA+E + + YD +VRN+ G ++Q  YG+DG
Sbjct: 830  FFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDG 889

Query: 778  MDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG-------- 829
            +    +E ++   +       + K    P  +R+L  +  +E + K++   G        
Sbjct: 890  LCGETVEFQNLPTIKLSNKAFEKKFKFDPTNERHLR-RVFNEDILKEMMGSGDVISELER 948

Query: 830  --KESCSEAFLNSLRKFFEGQQDK------LDKKIKFVEDIGWDDKSQILE----EVTHK 877
              ++ C +    +LR+ F   + K      L + I  V+ I   +K    +     V H 
Sbjct: 949  EWEQLCKDR--EALRQIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIHG 1006

Query: 878  TSGITEKQLEV---------------FIQTCFSR-----------YRVKRVEAGTAIGAI 911
             S + +K + V                +  C  R           +R+        IG I
Sbjct: 1007 VSDLLKKCVIVAGDDHLSVQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEI 1066

Query: 912  GAQ------SIGE------------PGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
             A+      S GE            P TQMTL TFHFAGV+S N+T GVPR+KEIIN +K
Sbjct: 1067 EARFQQAQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 1126

Query: 954  RISTPIITAEL---ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDME 1010
            +   P +T  L      D E A  V+  R+E T L +V  +  I       + VIA D E
Sbjct: 1127 KPKAPSLTVFLTGAAARDAEKAKNVL-CRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQE 1185

Query: 1011 TI 1012
             +
Sbjct: 1186 FV 1187



 Score =  177 bits (450), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 134/421 (31%), Positives = 204/421 (48%), Gaps = 63/421 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R++  +   G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1054 LSSEAFEWLIGEIEARFQQAQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1113

Query: 941  GVPRIKEIINGAKRISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            GVPR+KEIIN +K+   P +T  L      D E A  V+  R+E T L +V  +  I   
Sbjct: 1114 GVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL-CRLEHTTLRKVTANTAIYYD 1172

Query: 998  SRLASIVIA----------------------------LDMETIQDAHL------------ 1017
                + VIA                            LD + + D  L            
Sbjct: 1173 PDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAG 1232

Query: 1018 ------CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NV 1070
                  CI  D   E +V   +I +     K  D  +      VDK +    L  ++ N+
Sbjct: 1233 FGDDLNCIFNDDNAEKLVLRIRI-MNSDDNKFQDEEET-----VDKMEDDMFLRCIEANM 1286

Query: 1071 LPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGI 1124
            L  + ++GI+ + +V +   + + +K   + E GE K   ++ L  +GT +  V+    +
Sbjct: 1287 LSDMTLQGIEAISKVYMHLPQTDSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDV 1346

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
            D  +T SN I E+   LGIEA R  +  E+N  ++ +G+ ++ RH+ LL D+MT +G ++
Sbjct: 1347 DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1406

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
             ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    LGTG   
Sbjct: 1407 AITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGCFD 1466

Query: 1245 I 1245
            +
Sbjct: 1467 L 1467


>gi|3169691|gb|AAC17924.1| RNA polymerase II largest subunit, partial [Pyropia yezoensis]
          Length = 1685

 Score =  543 bits (1400), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 299/699 (42%), Positives = 429/699 (61%), Gaps = 27/699 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL +FKR++D D E++ LS R   PE LI+T + VPP  +R S++MD +Q  E+D+T  L
Sbjct: 133 VLSVFKRISDNDAELMGLSARWARPEWLILTLLPVPPPHVRTSIMMDATQRGEDDLTHNL 192

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFV 206
             I++ N +L+        A +       LQ  VA Y+N+D+ G+P + Q   RPL    
Sbjct: 193 AVIVKNNTALRNLEGHGAPAHRLAEQIFLLQFHVATYMNNDLPGMPRAAQKSGRPLKSIS 252

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
           QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL++ +V +P  +A+ LT+PE V+ +NIE
Sbjct: 253 QRLKGKEGRLRGNLMGKRVDFSARTVITPDPNLRLDQVGVPFSIAKNLTFPETVTAYNIE 312

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           +++Q ++NGPD+YP A+ I+  DG  +V     RN+  V+L+ G  V RH+ +GD ++FN
Sbjct: 313 EMQQLVENGPDEYPDAKYIQRDDGY-QVNLAYVRNRADVQLEIGYKVVRHITNGDFIVFN 371

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+MSIM HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQT   R E + LM
Sbjct: 372 RQPSLHKMSIMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTHATRAEVMELM 431

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTP 446
            V   + +P+  + ++   QD L    L T +DTF  R     +  ++ +G D V +P P
Sbjct: 432 MVPRCIVSPQGNKPVMGIVQDTLLGCMLFTYRDTFLRRDVTMSLLLHV-EGWDGV-IPPP 489

Query: 447 AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPND 506
           AI+KP  LWTGKQLFS+L+ P  N+  Y N              T  D+E     + P D
Sbjct: 490 AIIKPEPLWTGKQLFSLLL-PDVNLVRYCN--------------THPDDES--TDISPGD 532

Query: 507 GFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHG 566
             V     ELI+G + K T+G+   +GL  V  ++ G   T   ++ +  L   ++   G
Sbjct: 533 TRVLIVGGELITGIVDKRTVGSA-ANGLIHVTWKEKGPERTCVLISAIQVLVNHYVIMRG 591

Query: 567 FSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITD 625
            SIGI D +      ++ +  +     EV  ++ +   EG+L L PG    ++ E  +  
Sbjct: 592 QSIGIGDTIADAHTDANVRATITGAQAEVTQLE-RRAQEGELTLLPGKSMMESFEVEVNK 650

Query: 626 ILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFI 685
           +LN  R+ +G +   SL   N+   M   GSKGS INISQ+ ACVGQQ+V G+R   GF 
Sbjct: 651 VLNGARDTSGSSAQLSLLKSNNIKRMVSAGSKGSFINISQICACVGQQNVEGKRISYGFR 710

Query: 686 DRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRR 745
            R+LPHF      P ++GFV NS+  GL  +EFFFH MGGREGL+DTAVKTA+TGY+ RR
Sbjct: 711 RRTLPHFRMDDLGPESRGFVENSYLIGLRPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 770

Query: 746 LIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           L+KA+ED+ ++YD +VRN+   ++QFLYG+DG+D A +E
Sbjct: 771 LVKAMEDVMVKYDGTVRNSRSSVIQFLYGEDGLDGALVE 809



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 105/187 (56%), Gaps = 10/187 (5%)

Query: 1070 VLPMVIVKGIKTVERVVIAEKEK------EKRKVKENGEKKKYRLLVEGTGLQAVMGAEG 1123
            +L  + + GI  +++V   +  K           KEN    ++ L  +G    AVMG E 
Sbjct: 1248 LLSNLTLSGIPGIDKVFTRQDNKIVIDSVTGSFTKEN----EWLLETDGVNFIAVMGHED 1303

Query: 1124 IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
            +D  +T SN I E  + LGIEA R  +++EI   +   G  ++ RH+ +L D+MTFRG +
Sbjct: 1304 VDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVLVDVMTFRGHL 1363

Query: 1184 LGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGIL 1243
            + I+R GI ++  S LM  SFE+T+D L +A+++G  D + GVSE I++G   PLGTG  
Sbjct: 1364 MAISRHGINRVSSSALMKCSFEETSDILLDAAMHGETDTLTGVSESIMLGQLAPLGTGSF 1423

Query: 1244 KIRQRDA 1250
             +   DA
Sbjct: 1424 GLFLNDA 1430



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 3/149 (2%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T K     +    +R++     AG  +GA  AQSIGEP TQMTL TFH+AGV++ N+T 
Sbjct: 999  LTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1058

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR++EIIN +KR  TP +   L  +   +A R   V+  ++ T L  V    ++    
Sbjct: 1059 GVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAERAKQVQAELQHTTLRHVTHMTEVYYDP 1118

Query: 999  RLASIVIALDMETIQDAHLCINADIVKES 1027
             L + ++  D E +  A+  +  D+V  S
Sbjct: 1119 DLENTIVPADEELVS-AYYELPDDVVHAS 1146


>gi|116753354|ref|YP_842472.1| DNA-directed RNA polymerase subunit A' [Methanosaeta thermophila
           PT]
 gi|116664805|gb|ABK13832.1| DNA-directed RNA polymerase, subunit A' [Methanosaeta thermophila
           PT]
          Length = 876

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 311/793 (39%), Positives = 447/793 (56%), Gaps = 56/793 (7%)

Query: 16  KSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKES 75
           + +V K    A K   CP CG     +K                     F   +++ ++ 
Sbjct: 130 EDVVNKVFAEARKHKTCPYCGAPQREIK---------------------FERPLSYIEDG 168

Query: 76  KAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVI 132
                   + L P ++   F+R++D D  V+ +   + RPE  I+T + VPP+ +RPS+ 
Sbjct: 169 --------HKLTPSDIRDRFERISDEDIMVMGMNPETARPEWTILTVLPVPPVTMRPSIT 220

Query: 133 MDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGV 192
           ++  Q +E+D+T +L  II+ N   Q+              WE LQ  V  ++++ V GV
Sbjct: 221 LESGQRSEDDLTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQYHVTTFLDNTVSGV 280

Query: 193 PFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMA 251
           P +  +  RPL    QRLKGK+GRFRG+LSGKRV ++ RTVISP PNL I EV +PI +A
Sbjct: 281 PPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPYPNLSINEVGVPIEVA 340

Query: 252 RILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGC 311
           + LT P  V+  NIE +R+ +  GPD +PG   +   DG    +  +   ++A +L+ G 
Sbjct: 341 KELTVPIMVTPKNIEVVRKYVMRGPDNHPGVNYVTRADGRRVKVTERNCQEVAEQLEVGW 400

Query: 312 IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMH 371
            VDR L DGD+VLFNRQPSLHRMSIM HR ++MP++T R N +VC PYNADFDGDEMN+H
Sbjct: 401 KVDRQLADGDIVLFNRQPSLHRMSIMAHRVKVMPYKTFRLNPAVCPPYNADFDGDEMNLH 460

Query: 372 VPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMC 431
           VPQTEEAR EA +LM VQ N+ +P+ G  ++    D++T SFL+T K+   ++     + 
Sbjct: 461 VPQTEEARAEAEILMRVQENILSPRFGGPIIGGIHDYVTGSFLLTHKERRLNKDRLMEVL 520

Query: 432 CYMGDGMDRVDLPTPAILKPV--ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
                 +D  D+P PA         WTGKQ+FS LI P       +NLT K    SN  +
Sbjct: 521 ----KKLDISDIPVPAGYDENGDPYWTGKQIFS-LILPKD-----LNLTFKADFCSNCPV 570

Query: 490 RTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSG 549
             +G++       C ND +V  RN  L+ G +    +G   K  +   ++++Y     S 
Sbjct: 571 -CKGED-------CENDAYVVIRNGVLLKGTIDAEAVG-AFKGKVIDRIIKEYDPGVASQ 621

Query: 550 CMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQL 609
            ++R+  L+ R I   GFS GI D    +E +++   +     E     I+ Y  G+L+ 
Sbjct: 622 FLDRMTLLALRGIMLAGFSFGISDEDVPREAAEQIQDVTRSAKESVQRLIEAYRAGELEP 681

Query: 610 KPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVAC 669
            PG    +TLE  I   L + R+ AG+     L   NS ++M+  G++GS +N++QM AC
Sbjct: 682 LPGRTLEETLEMRIMQTLGKARDAAGQIAGRYLGLDNSGVVMAVSGARGSMLNLTQMAAC 741

Query: 670 VGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
           VGQQSV G R   G+ DR+LPHF R      A GFV +S+  GLS TEFFFH +GGREGL
Sbjct: 742 VGQQSVRGERIKRGYTDRTLPHFKRGDLGAEAHGFVESSYKKGLSPTEFFFHAIGGREGL 801

Query: 730 VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGE 789
           VDTA++T+ +GY+ RRL+ AL+DL + YD +VR   G IVQF YG+DG+DP+  +  S  
Sbjct: 802 VDTAIRTSQSGYLQRRLVNALQDLEVNYDGTVRETRGMIVQFKYGEDGVDPSRRDYAS-- 859

Query: 790 PLNFDRLLMKVKA 802
           P N  R++ KV A
Sbjct: 860 PENVHRIIRKVLA 872


>gi|29539342|dbj|BAC67672.1| DNA-directed RNA polymerase II largest subunit [Cyanidioschyzon
           merolae]
 gi|449019055|dbj|BAM82457.1| RNA polymerase II largest subunit [Cyanidioschyzon merolae strain
           10D]
          Length = 1819

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 297/695 (42%), Positives = 413/695 (59%), Gaps = 24/695 (3%)

Query: 94  LFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
           +F+ + D D E+L       RPE ++++ + VPP  +RPS+ MD     E+D+T +L  I
Sbjct: 219 IFRHIRDEDLELLGFHPRFSRPEWMVLSVLPVPPPHVRPSIQMDAVSRGEDDLTFKLGDI 278

Query: 151 IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVP-FSMQVARPLSGFVQRL 209
           I+ N +LQ+   E   A      +  LQ  VA ++N+D+ G+P  +++  RPL    QRL
Sbjct: 279 IKANNALQRLEAEGAPAHVIREQYVLLQFHVATFMNNDLPGMPRATLRSGRPLKSIAQRL 338

Query: 210 KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
           KGK+GR R NL GKRV ++ RTVI+ DP L + EV +P  +A  LTYPE V+ +NI++L 
Sbjct: 339 KGKEGRVRNNLMGKRVNFSARTVITADPQLALDEVGVPRSVAMTLTYPEVVTPYNIDRLW 398

Query: 270 QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQP 329
           + ++NGP+ YPGA  +   DG  R+     R    + L+ GC+V+RHL +GD+VLFNRQP
Sbjct: 399 EAVRNGPNAYPGALFVIRNDGK-RIALQFVRRSADIVLEPGCVVERHLLNGDLVLFNRQP 457

Query: 330 SLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQ 389
           SLHRMSIM HR RI+P+ T R N S  +PYNADFDGDEMN+HVPQ+EE R E   LM V 
Sbjct: 458 SLHRMSIMGHRVRILPYSTFRMNLSATSPYNADFDGDEMNLHVPQSEEVRAEIKELMAVP 517

Query: 390 NNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAIL 449
            N+ +P+    ++   QD L    L T +DTF +      +  ++     R+  P PAIL
Sbjct: 518 KNIVSPQANRPVMGIVQDSLLGCMLFTLRDTFLEEDTVFNLLLHLPHFDGRI--PAPAIL 575

Query: 450 KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFV 509
           KP  LWTGKQ+FS+L+    N+               +L     D E  I  M P+D  V
Sbjct: 576 KPRPLWTGKQIFSLLLPDGVNL--------------ERLSNGHPDHERTI--MTPSDTRV 619

Query: 510 YFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSI 569
             +N ELI+G + K T+G+ +   L  V  ++ G   TS  ++ +  L   W+  +G SI
Sbjct: 620 LIQNGELITGIVDKRTVGS-SAGSLIHVTWKESGPERTSQLISDIQLLINYWLMQNGMSI 678

Query: 570 GIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNR 629
           GI D            + I E  +     I+   EG+L+ +PG    ++ EA +  +LN 
Sbjct: 679 GIGDCIADAHTMAAINRTIQEAKDEVRQLIRLAQEGRLERQPGKTMLESFEACVNRVLNS 738

Query: 630 IREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSL 689
            R+ AG     SL   N+   M   GSKGS IN+SQ+VACVGQQ+V G+R P GF  R+L
Sbjct: 739 ARDKAGGFAQESLLPSNNIKRMVSAGSKGSFINVSQIVACVGQQNVEGKRIPYGFRRRTL 798

Query: 690 PHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKA 749
           PHF      P A+GFV NS+  GL+  E FFH MGGREGL+DTAVKTA+TGY+ RRL+KA
Sbjct: 799 PHFVVDDLSPEARGFVENSYLRGLTPEEVFFHAMGGREGLIDTAVKTAETGYIQRRLMKA 858

Query: 750 LEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           +ED+ I+YD +VRN+ G ++QFLYGDD  D A +E
Sbjct: 859 MEDIRIEYDGTVRNSLGDVMQFLYGDDAADGAMLE 893



 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 102/182 (56%), Gaps = 10/182 (5%)

Query: 1076 VKGIKTVERVVIAEKEKEKRKVKENGEKKKYR------LLVEGTGLQAVMGAEGIDGCKT 1129
            +KGI  + +V +    ++ ++V  + E   +R      L  EGT L AV+    +D  +T
Sbjct: 1322 LKGIPGIRKVFL----RQTQRVLFDPEAGSFRSAPEWVLDTEGTALLAVLSHPDVDARRT 1377

Query: 1130 KSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRF 1189
             SN I EV Q LGIEAAR  + +E+   +   G S+  RH+ LL ++MT RG ++ ++RF
Sbjct: 1378 ISNEITEVLQVLGIEAARQALYNEMYAVLSFDGSSVGYRHLALLVEVMTCRGMLIPVSRF 1437

Query: 1190 GIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRD 1249
            GI +++   LM  +FE+T + L  A+  G  D  EGVS+ +I+G    +GTG   +   +
Sbjct: 1438 GINRLETGPLMRCTFEETVEILATAATFGVRDACEGVSQAVILGQRAKVGTGAFSLTLDE 1497

Query: 1250 AV 1251
            +V
Sbjct: 1498 SV 1499



 Score =  103 bits (256), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 77/125 (61%), Gaps = 3/125 (2%)

Query: 890  IQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII 949
            I+T F R    R   G  +GA+ AQS+GEP TQMTL TFHFAGV++ N+T GVPR+KE+I
Sbjct: 1063 IETRFVR---ARATPGEMVGAVAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELI 1119

Query: 950  NGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDM 1009
            N A++  TP +T  L+   ++  A +V+  +E+  L  V +S  I      A+ V+  D 
Sbjct: 1120 NVARQAKTPSVTVYLKSGKDKELANIVQSELEQCRLRDVVESSAIYFDPDPANTVVEADR 1179

Query: 1010 ETIQD 1014
            E ++D
Sbjct: 1180 EWVRD 1184


>gi|325969566|ref|YP_004245758.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta moutnovskia
           768-28]
 gi|323708769|gb|ADY02256.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta moutnovskia
           768-28]
          Length = 891

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 288/700 (41%), Positives = 425/700 (60%), Gaps = 26/700 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+P+ +    +++ D+D  +L       RPE  I+T + VPP  +RPS+ ++  Q +E+D
Sbjct: 190 LDPMKIRERLEKIPDSDLVLLGWDPKFARPEWAILTVLPVPPPQVRPSIQLETGQRSEDD 249

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVP-FSMQVARP 201
           +T +L  I++ N  L+  +     +      W+ LQ  VA Y N+++  +P    +  RP
Sbjct: 250 LTHKLVDIVRVNEKLRTAIESGAPSSVVDQLWDLLQYHVATYFNNELPNLPPVKHRSGRP 309

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV+++ RTVISPDPNL I EV +PI +A+ LT P  V+
Sbjct: 310 LKTLAQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLSINEVGVPIDIAKTLTVPMMVT 369

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGT-ARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           + N+E +RQ + NGP+ +PGA  + YPDG    + Y + R +LA +L  G +V+RHL +G
Sbjct: 370 EWNLELVRQLVLNGPEVWPGANYVIYPDGRRVDLRYFRDRRELANKLAPGFVVERHLMNG 429

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D+VLFNRQPSLHRMS+M H  R++P RT R + +VC PYNADFDGDEMN+HVPQ EEAR 
Sbjct: 430 DIVLFNRQPSLHRMSMMGHIVRVLPGRTFRLHLAVCPPYNADFDGDEMNLHVPQNEEARA 489

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS-LMCCYMGDGMD 439
           EA  LM VQN++ TP+ G  ++ + QD++T  +L+TRKD   ++   + L+     DG  
Sbjct: 490 EARTLMIVQNHIITPRYGGPIIGARQDYITGGYLLTRKDNLINKELLTYLLAAANYDG-- 547

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
             ++  PAI+ P ELWTGKQ+ S+L+    N   +V  T  +             E  + 
Sbjct: 548 --EIDEPAIMHPKELWTGKQVISMLLPKDLN---WVQPTAIK-------------ESCKE 589

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
              C  D ++   N  + +G L K ++G    D L+ V+++ YG       ++ + +   
Sbjct: 590 PYNCYTDEYIIIVNGYMATGVLDKKSIGAEQVDSLWHVVVKRYGNDYARRWVDSILRALL 649

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
           R++   GFS+GID ++  +E   +  KL  E+       I++Y EG+L+ +PG    +TL
Sbjct: 650 RFLDLRGFSMGIDSLEMPRESYMELEKLYEESERKVLDYIQKYKEGRLEAEPGLTIDETL 709

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E  IT  L+R+RE A +     +       IM++ G++GS +NI+QMVA +GQQ++ G R
Sbjct: 710 ENDITIELSRVREAAARVAERYINKDGEAYIMAKTGARGSIVNITQMVAMLGQQTIRGER 769

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
              GF  R+  HF      P AKGFV N+F +GL+  EFFFH  GGR+GLVDTAV+TA +
Sbjct: 770 FKRGFAGRTTAHFEPGDLGPIAKGFVRNNFKTGLTPLEFFFHAAGGRDGLVDTAVRTAQS 829

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           GYM RRLI AL+D+ + YD +VRNA G I+Q  Y +D +D
Sbjct: 830 GYMQRRLINALQDIYVTYDGTVRNASGSIIQTKYAEDSID 869


>gi|453086034|gb|EMF14076.1| DNA-dependent RNA polymerase II largest subunit [Mycosphaerella
           populorum SO2202]
          Length = 1780

 Score =  540 bits (1392), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 289/711 (40%), Positives = 437/711 (61%), Gaps = 34/711 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQS---N 139
           + P + L +F+ ++D D   L L+    RPE +I+T + VPP A+RPS+ +DG+     +
Sbjct: 212 ITPTDALRVFRNISDEDLYRLGLNVDYARPEWMILTVLPVPPPAVRPSISVDGTSQGMRS 271

Query: 140 ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-V 198
           E+D+T +L  II+ N+++++   E + A  +    + LQ  VA Y+++D+ G+P S+Q  
Sbjct: 272 EDDLTYKLSDIIRANSNVRRAEQEGSPAHITEEFTQLLQYHVATYMDNDIAGLPKSIQKS 331

Query: 199 ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RPL     RLK K+GR RGNL GKRV+++ RTVI+ DPNL + +V +P   AR+LT+PE
Sbjct: 332 GRPLKAIRARLKSKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSTARVLTFPE 391

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
           RV+ +NI KL + ++NGP ++PGA+ I   DG+ R+     +    ++L++G IV+RH+ 
Sbjct: 392 RVTPYNIHKLSELVRNGPSEHPGAKHIIREDGS-RIDLRYHKRAGEIQLQNGWIVERHIV 450

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD ++FNRQPSLH+ S+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+ E 
Sbjct: 451 DGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSHET 510

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYD-RAAFSLMCCYMG-D 436
           R+E   L  V +N+ +P+    L+   QD +   +++T++DT  D     ++M    G D
Sbjct: 511 RSEVANLCAVPHNIVSPQKNGPLMGIVQDTMAGIYMMTKRDTMMDYEQVMNIMLWVPGWD 570

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
           G+    +P PAILKPV  WTGKQ+ S+ +    N                  I   GD+E
Sbjct: 571 GI----VPQPAILKPVPRWTGKQIMSMGLPSGLN------------------IMKLGDDE 608

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
             I ++   D  V  +N EL+ G+L K  +G  +  G+  ++  D G  AT    N   +
Sbjct: 609 DHI-SLAEADSSVLVQNGELVWGRLTKKLVG-ASGGGIVHLIFNDRGTDATVEFFNAAQR 666

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           +   W+ ++GFS+GI D  P  ++     + I +     +  ++E    +++  PG    
Sbjct: 667 IVCYWLLHNGFSVGIGDTIPDADMVLAIEQNIVKEKATVDGYMREVQSDEMEALPGMTIR 726

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           +T E+     L+  R +AG A    +   N+  +M + GSKGS  N+SQM A VGQQS+ 
Sbjct: 727 ETFESQTKAALDNARNNAGDAAYKGMKPCNNVGVMVKGGSKGSTTNVSQMTAAVGQQSLE 786

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF DR LPHFP+    PA++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT
Sbjct: 787 GKRLPFGFKDRVLPHFPKDDYSPASRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 846

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           A+TGY+ RRL+KALE++ I+YD +VRN+ G I+QF+YG+DG+D   +EG++
Sbjct: 847 AETGYIQRRLVKALEEIMIKYDGTVRNSLGDILQFVYGEDGLDATFIEGQA 897



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 121/425 (28%), Positives = 185/425 (43%), Gaps = 77/425 (18%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFH AGV +   T+GVPR+KEI+N A  
Sbjct: 1069 NRFLRALVSPGEMVGVLAAQSIGEPATQMTLNTFHLAGVTAKTTTKGVPRLKEILNVADN 1128

Query: 955  ISTPI--ITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP   +  E      + +A++++ ++E T L  V  + +I     + S VI  D + +
Sbjct: 1129 IKTPNMRVFQEPHATTKQESAKLLRSKVEFTSLRGVTDAAEIYYDPDVQSTVIEEDRDMV 1188

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKS-KIHFELYSLKNVL 1071
            +   +     I +E   + P  + K     VL  R+L     +DK   +      ++   
Sbjct: 1189 ESYFI-----IPEEG--ENPDAQSKWMLRFVLGRRQL-----LDKGLTVTNVAEKIRETY 1236

Query: 1072 P---MVIVKGIKTVERVVIAEKEKEKRKVKENGE-------KKKYRLLVEGTGLQAVMGA 1121
            P    VI     + E VV      +  K +E GE       K+    +++   L+ V G 
Sbjct: 1237 PKDVAVIFSDDNSDEMVVRVRMTNQADKEEELGESSEDDTLKQLSEHMLDNVVLRGVQGV 1296

Query: 1122 ------------EGIDGCKTKSN---------------HIFEVQQTLGIEAARICIIDEI 1154
                        E  DG   KS                ++ +V    G+++ R    +  
Sbjct: 1297 RRVFVSKDLSMIEEADGKLVKSKNDKACEEWYLDTDGINLKDVLAVEGVDSTR-TTCNHF 1355

Query: 1155 NETMKAHGMS--------------------IDKRHMMLLADLMTFRGEVLGITRFGIQKM 1194
              TM+  G+                     ++ RHM +L D+M  RGE++ +TR GI + 
Sbjct: 1356 QSTMRVFGIEAVRASLMRELKDVLTNDGSYVNHRHMAILCDVMCARGELMAVTRHGINRA 1415

Query: 1195 DKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG----ILKIRQRDA 1250
            D   LM  SFE+T + LF A+ +G  D   GVSE II+G   P GTG    +L       
Sbjct: 1416 DTGALMRCSFEETVEILFEAASSGELDDCRGVSENIILGQLAPSGTGEFDVLLDNEMLKT 1475

Query: 1251 VPPML 1255
            VPP +
Sbjct: 1476 VPPQM 1480


>gi|303272485|ref|XP_003055604.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463578|gb|EEH60856.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1694

 Score =  540 bits (1391), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 311/756 (41%), Positives = 451/756 (59%), Gaps = 51/756 (6%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
            L + K ++D DC  L LS     P   I+  + VPP  +RPSV  D S  +E+D+T +L
Sbjct: 198 ALKILKNISDEDCIALGLSPEHAHPSWYILQVLPVPPHPVRPSVAFDASTRSEDDLTVKL 257

Query: 148 KRIIQTNASLQQELVEANSAFKSLAG--WETLQVEVAQYINSDVRGVPFSM-QVARPLSG 204
             I++ N +LQ++  E N A + + G   E LQ  +  ++++ V G P S+ +  RP+  
Sbjct: 258 MEIVRMNKNLQKQ--EMNGAPQHVIGEFTELLQYHIMTFMDNTVAGQPRSLTRSGRPIKS 315

Query: 205 FVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHN 264
             +RLKGK GR RGNL GKRV+++ RTVI+PDPNL + E+ +P  +A  +TYPE V+ +N
Sbjct: 316 ISERLKGKNGRIRGNLMGKRVDFSARTVITPDPNLMLDELGVPWSIALNMTYPEMVTPYN 375

Query: 265 IEKLRQCIQNGPDKYPG---ARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
           IE+LR+ ++NGP   PG   A+ I   DG  R+     + +    L+ G  V+RH+ +GD
Sbjct: 376 IERLRKLVENGPHPPPGETGAKYIIREDG-QRLDLRFLKKESDKRLEYGYRVERHMINGD 434

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
            VLFNRQPSLH+MSIM HR RIMP+ T R N SV  PYNADFDGDEMNMH+PQ+ E R E
Sbjct: 435 CVLFNRQPSLHKMSIMGHRVRIMPYSTFRMNISVTPPYNADFDGDEMNMHLPQSLETRAE 494

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
              LM V   + +P+  + ++A  QD L +S L+T++DTF  +  F  +  ++ +   +V
Sbjct: 495 VQELMMVPKMIVSPQANKPVMAIVQDTLLASRLMTKRDTFIKKDVFMNILMWLENWDGKV 554

Query: 442 DLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET 501
             P PAILKP  LWTGKQ+F++ + P  ++           T  +   +     +  +E 
Sbjct: 555 --PKPAILKPEPLWTGKQVFTMFL-PDVSL-----------TKQSAWAKDNDPHDFSVE- 599

Query: 502 MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARW 561
               D  V     ELI+G L K TLG+G   GL  V+  ++G  A  G ++++  L   W
Sbjct: 600 ----DTGVRIEKGELITGILCKKTLGSGGG-GLIHVIWEEWGPTAARGFVSQVQWLLNYW 654

Query: 562 IGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVK--IKEY----NEGKLQLKPGCDA 615
           +  HGF+IGI D      ++D  G + S N  +   K  +KE         L+L+PG   
Sbjct: 655 LLQHGFTIGISDT-----IADD-GTMNSINDTITKAKQDVKEVIALAQTNALELQPGMTM 708

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            Q+ E  +  ILN+ R++AG +  GSL   N+  +    GSKGS +NISQM+ACVGQQ+V
Sbjct: 709 QQSFEQKVNQILNKARDNAGNSAQGSLDDTNNVKMTVTAGSKGSFLNISQMIACVGQQNV 768

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R P GF  RSLPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVK
Sbjct: 769 EGKRIPFGFDGRSLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 828

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR 795
           T++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L  D+
Sbjct: 829 TSETGYIQRRLVKAMEDIIVKYDGTVRNSAGDVIQFLYGEDGMDATYVESQKIDTLRHDK 888

Query: 796 LLMK----VKATCPPAGQRYLSPQQVSEI---VEKQ 824
              K    +    P  G+ ++S  Q +++   VEK+
Sbjct: 889 EKFKRTFHLDPDEPNFGKGWMSEAQANDLANSVEKR 924



 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/400 (32%), Positives = 200/400 (50%), Gaps = 63/400 (15%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+++     G  IG + AQSIGEP TQMTL TFHFAGV++ N+T GVPR+KEIIN AK+
Sbjct: 1055 SRFKMALAPPGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKK 1114

Query: 955  ISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKI------------------ 994
            I TP +T  L  +   +   A+ V+  +E T L  VA   +I                  
Sbjct: 1115 IKTPSLTVALRKDLAGDRAMAKNVQASLEYTTLHSVAAVSEIYYDPDPTDTVIEEDKEFV 1174

Query: 995  ----------VMTSRLASIVIALDM--------------------ETIQDAHLCINADIV 1024
                      V  +R++  V+ +++                    E  QD   CI  D  
Sbjct: 1175 RAYYEMPDEEVDPARMSPWVLRIELNREMMVDKKLLMADVAERINEDFQDDLSCIFNDDN 1234

Query: 1025 KESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVE 1083
             E ++           I++++  +LE      +++    L  L+  +L  + ++GI  ++
Sbjct: 1235 SEKLIV---------RIRIMN-SELEKEQGASQTEDEVFLKRLEAQLLNSLALRGIPDIK 1284

Query: 1084 RVVIAEKEKE--KRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTL 1141
            +V I E        + +   +K ++ L  EG  L  VM  E +D  +T SNH+ EV Q L
Sbjct: 1285 KVFIREANTMGLDPETETYAKKSEWMLDTEGVNLLEVMNHEDVDFTRTTSNHLIEVIQVL 1344

Query: 1142 GIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLML 1201
            GIEA R  ++ E+   ++  G  ++ RH+ +L ++MT+RG ++ ITR GI +++   LM 
Sbjct: 1345 GIEAVRNALLKELRGVIEFDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRVETGPLMR 1404

Query: 1202 ASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             SFE+T D L  A+     DR+ G+SE I++G   PLGTG
Sbjct: 1405 CSFEETVDILMEAAAFAERDRMSGLSENIMLGQFCPLGTG 1444


>gi|120561227|gb|ABM26999.1| RNA polymerase II largest subunit, partial [Catenaria anguillulae]
          Length = 1020

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 305/725 (42%), Positives = 429/725 (59%), Gaps = 29/725 (4%)

Query: 73  KESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRP 129
           K+    +    + L P  VL + K+++D DC  L L     RPE +++T   VPP  +RP
Sbjct: 125 KDDDGEIKEGKHDLTPAEVLQILKKISDADCLHLGLDPEYARPEWMLLTVFPVPPPPVRP 184

Query: 130 SVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDV 189
           S++MDG+   E+D+T +L  I++ NA L++   +  +        + LQ   A ++++++
Sbjct: 185 SILMDGTSRGEDDLTYKLCDIVKANAHLKKAQEQGATGHMMREHEDLLQFHCATFVDNEI 244

Query: 190 RGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPI 248
            G+P + Q   RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL I +V +P 
Sbjct: 245 SGMPRANQRSGRPIKAIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPR 304

Query: 249 RMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELK 308
            +A  LTYPE V+ HN+ +L++ ++ GP+++PGA+ +  PDGT RV         A  L+
Sbjct: 305 SIASNLTYPEMVTRHNVNRLQEAVERGPEEHPGAKYVIRPDGT-RVDLRVTGVTGAPSLQ 363

Query: 309 SGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEM 368
            G IV+RHL D DV++FNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEM
Sbjct: 364 PGWIVERHLMDDDVIIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEM 423

Query: 369 NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 428
           N+HVPQ+ EAR E   L  V   + +P++ + ++   QD L      TR+DTF DRA   
Sbjct: 424 NLHVPQSVEARAEIQQLCMVPLQIVSPQSNKPVMGIVQDTLCGITKFTRRDTFMDRAMVM 483

Query: 429 --LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSN 486
             LM     DG    ++P PAI+KP  +WTGKQ+ S++I P  N   + +          
Sbjct: 484 NLLMWVPGWDG----NMPPPAIVKPKPMWTGKQIMSLII-PKVNAVTFHS---------- 528

Query: 487 KLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHA 546
               T  D E   + + P D  V   + EL++G + K T+G     GL  V   ++G  A
Sbjct: 529 ----THPDGET--DLLSPGDTRVIVEDGELVAGIVCKKTVGTA-AGGLVHVSWMEHGPEA 581

Query: 547 TSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGK 606
               +N    +   W+ + GFS+GI D     E +D   K+I +  +  N  I E    K
Sbjct: 582 AKALLNGCQTIVNYWLLHTGFSVGIGDTVADDETTDLINKMIFDARQRVNEIIGEAQSDK 641

Query: 607 LQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQM 666
           L+ + G    +T EA +   LN     AG A   S    N+   M   GSKGS INISQM
Sbjct: 642 LERQTGMTLRETFEANVNRTLNEAVNKAGGAAAKSFKVHNNVKHMVVAGSKGSNINISQM 701

Query: 667 VACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGR 726
            ACVGQQ+V G+R P GF  RSLPHF +    P ++GFV NS+  GL+  EFFFH MGGR
Sbjct: 702 SACVGQQNVEGKRIPFGFQYRSLPHFVKDDYSPESRGFVENSYLRGLNPQEFFFHAMGGR 761

Query: 727 EGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           EGL+DTAVKTA+TGY+ RRL+KALED+ ++YD +VRNA G I+QFLYG+DGMD   +E +
Sbjct: 762 EGLIDTAVKTAETGYIQRRLVKALEDIMVKYDGTVRNAQGNIIQFLYGEDGMDGTRVESQ 821

Query: 787 SGEPL 791
             EPL
Sbjct: 822 VLEPL 826


>gi|170062578|ref|XP_001866731.1| DNA-directed RNA polymerase II largest subunit [Culex
            quinquefasciatus]
 gi|167880465|gb|EDS43848.1| DNA-directed RNA polymerase II largest subunit [Culex
            quinquefasciatus]
          Length = 1874

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 363/1036 (35%), Positives = 543/1036 (52%), Gaps = 99/1036 (9%)

Query: 35   CGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFL 94
            CG+    +++    L +I +   V E  QE   A+T  +                 V  +
Sbjct: 174  CGHYQPSLRRTG--LDVIAEWKTVNEDSQEKKIAVTAER-----------------VWEI 214

Query: 95   FKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRII 151
             K +TD +C VL +     RP+ +IIT + VPP+A+RP+V+M G+  N++D+T +L  I+
Sbjct: 215  LKHITDEECYVLGMDPKFARPDWMIITVLPVPPLAVRPAVVMFGATKNQDDLTHKLSDIV 274

Query: 152  QTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRLK 210
            ++N  L++      +A       + LQ  VA  +++D+ G+P +MQ + +PL     RLK
Sbjct: 275  KSNNELKKNEATGAAAHVIAENIKMLQFHVATLVDNDMPGMPKAMQKSGKPLKSVKSRLK 334

Query: 211  GKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQ 270
            GK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ +T+PE V+  NI+++++
Sbjct: 335  GKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNMTFPELVTPFNIDRMQE 394

Query: 271  CIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPS 330
             ++ G  +YPGA+ I   +G  R+          + L+ G  V+RHL D D+V+FNRQP+
Sbjct: 395  LVRRGNSQYPGAKYIVRDNG-ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPT 453

Query: 331  LHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQN 390
            LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R E   +     
Sbjct: 454  LHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHITPR 513

Query: 391  NLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLPTPAI 448
             + TP+  + ++   QD LT+   +T++D F ++      LM     DG     +P P I
Sbjct: 514  QIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPTWDG----KMPQPCI 569

Query: 449  LKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR--IETMCPND 506
            LKP  LWTGKQ+F+++I  + NM          +T+S     T  DEE     + + P D
Sbjct: 570  LKPKPLWTGKQIFTLIIPGNVNMI---------RTHS-----THPDEEDDGPYKWISPGD 615

Query: 507  GFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHG 566
              V   + ELI G L K TLG      L+ V L + G          +  +   W+   G
Sbjct: 616  TKVMVEHGELIMGILCKKTLGTSAGSLLHIVFL-ELGHEIAGRFYGNIQTVVNNWLLLEG 674

Query: 567  FSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDI 626
             SIGI D         +  + I +  E     I++ +  +L+  PG    QT E  +  I
Sbjct: 675  HSIGIGDTIADPATYTEIQRAIRKAKEDVIGVIQKAHNMELEPTPGNTLRQTFENQVNRI 734

Query: 627  LNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFID 686
            LN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P GF  
Sbjct: 735  LNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 794

Query: 687  RSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRL 746
            R+LPHF +    P ++GFV NS+ +GL+ TEF+FH MGGREGL+DTAVKTA+TGY+ RRL
Sbjct: 795  RTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRL 854

Query: 747  IKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPP 806
            IKA+E + + YD +VRN+ G ++Q  YG+DG+    +E ++   +     + + +    P
Sbjct: 855  IKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKVFEKRYRFDP 914

Query: 807  AGQRYLSPQQVSEIVEKQLAAYGK-----ESCSEAFL---NSLRKFFEGQQDK------L 852
              +R +  +  +E V K+L   G      E+  E  L    +LR+ F     K      L
Sbjct: 915  TNERNIR-RVFNEEVIKELTESGDVIQEIEAEYEQLLRDREALRQIFPNGDSKVVLPCNL 973

Query: 853  DKKIKFVEDIGWDDKS--------QILEEV------------THKTSGITEKQLEVFIQT 892
             + I  V+ I   +K         ++++ V            T + S    +   +  Q 
Sbjct: 974  QRMIWNVQKIFHINKRAPTDLSPLKVIQGVRDLLQKCVIVAGTDRLSKQANENATLLFQ- 1032

Query: 893  CFSR-----------YRVKRVEAGTAIGAIGA---QSIGEPGTQMTLKTFHFAGVASMNI 938
            C  R           +R+        IG I     Q+   PG  MTL TFHFAGV+S N+
Sbjct: 1033 CLVRSTLCTKYVAEEFRLINEAFEWLIGEIETRFQQAQCNPGEMMTLNTFHFAGVSSKNV 1092

Query: 939  TQGVPRIKEIINGAKRISTPIITAELECNDNENA--ARVVKGRIEKTLLGQVAKSIKIVM 996
            T GVPR+KEIIN +KR   P +T  L      +A  A+ V  R+E T L +V  +  I  
Sbjct: 1093 TLGVPRLKEIINISKRPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYY 1152

Query: 997  TSRLASIVIALDMETI 1012
                   VIA D E +
Sbjct: 1153 DPDPQRTVIAEDQEFV 1168



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 105/183 (57%), Gaps = 6/183 (3%)

Query: 1069 NVLPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAE 1122
            N+L  + ++GI+ + +V +   + + ++   +   GE K   ++ L  +GT +  V+   
Sbjct: 1267 NMLSDMTLQGIEAIGKVYMHLPQTDAKRRIVITPEGEFKAIGEWLLETDGTSMMKVLSER 1326

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
             +D  +T SN I E+ Q LGIEA R  +  E+N  ++ +G+ ++ RH+ LL D+MT +G 
Sbjct: 1327 DVDPVRTASNDICEIFQVLGIEAVRKSVEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGH 1386

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            ++ ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    +GTG 
Sbjct: 1387 LMAITRHGINRQDTGALMRCSFEETVDVLNDAAAHAEVDPMRGVSENIIMGQLPRMGTGC 1446

Query: 1243 LKI 1245
              +
Sbjct: 1447 FDL 1449


>gi|83320436|gb|ABC02845.1| RNA polymerase II largest subunit, partial [Entomophthora muscae]
          Length = 1007

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 308/760 (40%), Positives = 443/760 (58%), Gaps = 35/760 (4%)

Query: 60  ESLQEFAS--AITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEK 114
           E+L+ +A+  A  H+++S +   +   ++    VL  FK++TD D E++ LS    RPE 
Sbjct: 102 EALKLYATFKADKHSEDSNSDEKL---VITAQFVLQTFKKITDADLEIMGLSAQFARPEW 158

Query: 115 LIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGW 174
           ++++N+ VPP  +RPS+++ G    E+D+T +L  II+ N  L+    E       L  +
Sbjct: 159 MVLSNLPVPPPCVRPSIVVPGMGRGEDDLTHKLSDIIKANDQLKTAEAEGEPT-HILDEY 217

Query: 175 E-TLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTV 232
           E  LQ  V+ + ++DV G+P + Q + RP+     RLKGK+GR RGNL GKRV+++ RTV
Sbjct: 218 EFLLQFHVSTFKDNDVAGLPAATQKSGRPVKSLRARLKGKEGRIRGNLMGKRVDFSARTV 277

Query: 233 ISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA 292
           I+ DP L I EV +P  +AR LT+PE V+ +N EK++  ++NGP ++PGA+ +   DG  
Sbjct: 278 ITGDPMLSINEVGVPFSIARNLTFPEMVTSYNFEKMQNLVRNGPTQHPGAKYVIRDDGV- 336

Query: 293 RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 352
           R+     R    + L+ G  V+RH+++GDVV+FNRQPSLH+MS+M H  R++P+ T R N
Sbjct: 337 RIDLRHRRATGDMALQVGFCVERHIDNGDVVIFNRQPSLHKMSMMGHHVRVLPFSTFRLN 396

Query: 353 ESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSS 412
            SV +PYNADFDGDEMNMHVPQ+ EAR+E L LM V   + +P+  + ++   QD L   
Sbjct: 397 LSVTSPYNADFDGDEMNMHVPQSHEARSEVLELMMVSKQIVSPQGNKPVMGIVQDSLCGV 456

Query: 413 FLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMR 472
              T++D F  +     +  ++ D    +  P P I  PV LWTGKQL S+LI    NM 
Sbjct: 457 RKFTKRDCFLSKEFVQNLVLWIPDWNGYI--PPPCIQFPVPLWTGKQLLSLLIPTGINMT 514

Query: 473 VY-VNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNK 531
            +       EK+Y                 + P D  V   N E+I+G + K T+G    
Sbjct: 515 TFHAAHPDDEKSY-----------------ISPGDTRVEIVNGEIIAGIICKRTVGAA-A 556

Query: 532 DGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISEN 591
            GL   +  + G   T+  +N    L   W   + FSI I D+   +E   K  + I++ 
Sbjct: 557 GGLIHTIYNELGEVPTTRFLNGTQTLVNYWFMQNSFSIAIGDMIADRETMKKVNQSIADA 616

Query: 592 YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIM 651
                  I+E   G LQ  PG    +  E+ +   LN+ R+DAGK    SLP  N+   M
Sbjct: 617 KIEVARCIEEAQRGTLQPLPGLTVREAFESRVNQALNKARDDAGKMAERSLPEYNNIKQM 676

Query: 652 SQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYS 711
              GSKGS +NISQM ACVGQQ+V   R P GF +R+LPHF +  + P ++GFV NS+  
Sbjct: 677 VVSGSKGSFVNISQMAACVGQQNVESARIPFGFQNRTLPHFTKYDQGPVSRGFVENSYLR 736

Query: 712 GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQF 771
           GL+  EFFFH MGGREGL+DTAVKTA+TGY+ RRL+KALED+ + YD +VRN+ G IVQF
Sbjct: 737 GLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVNYDGTVRNSLGQIVQF 796

Query: 772 LYGDDGMDPANMEGKSGEPLNFDRLLMKVKA--TCPPAGQ 809
            YG+DGMD A +E +  + L    L  + K   T  P+G+
Sbjct: 797 CYGEDGMDAAFIEKQRFDNLRLSNLEFENKYLLTVKPSGE 836


>gi|83320424|gb|ABC02839.1| RNA polymerase II largest subunit, partial [Polychytrium
           aggregatum]
          Length = 1016

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 298/707 (42%), Positives = 431/707 (60%), Gaps = 28/707 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITER 146
           V+ +FK +++ D   + LS+   RPE + IT +AVPP+ +RP+V M+ G   +++D+T +
Sbjct: 143 VVSIFKSISEEDINNMGLSQDWARPEWMCITVLAVPPMPVRPAVNMNNGGGVSQDDLTYK 202

Query: 147 LKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGF 205
           +  I++TN  L++   E + A       + LQ  VA Y+N+D+ G+P + Q + RPL   
Sbjct: 203 IADIVKTNNLLRKHEAEGSPAHVINEFEKLLQYHVATYMNNDISGIPKAQQKSGRPLKSI 262

Query: 206 VQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNI 265
             RLKGK+GR RGNL GKRV+++ RTVI+ DPNL I +V +P  +AR LT+PE V+ +NI
Sbjct: 263 RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIARNLTFPENVTPYNI 322

Query: 266 EKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDVVL 324
            +L++ +QNGP ++PGA+ +   +G    L Y K      + L+ G  V+RHL D DVV+
Sbjct: 323 ARLQKYVQNGPMEHPGAKYVIRDNGERIDLRYSKVGRD--IHLQPGYKVERHLMDDDVVI 380

Query: 325 FNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALL 384
           FNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+ E R E   
Sbjct: 381 FNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETRAEIQE 440

Query: 385 LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLP 444
           L  V   + TP+     +   QD L +    TR+D F  +     +  ++ D    V  P
Sbjct: 441 LCMVPKQIVTPQKNGPCMGIVQDTLCAIRKFTRRDCFLSKDMVMNLLMWVPDWDGTV--P 498

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
           TP I+KP+ LWTGKQ+ S++I P  NM  Y              +    DE+  I    P
Sbjct: 499 TPCIIKPIPLWTGKQMMSLII-PRINMVGY-------------HMAHPDDEKSDI---SP 541

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  VY  + EL++G L K T+G+ +++G+  +   ++G  A  G  N    +   W+ +
Sbjct: 542 GDTKVYIEDGELLTGILCKKTVGS-SQNGIIHITFNEHGPEAAKGFFNSCQLIVNYWLLH 600

Query: 565 HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
           +GFSIGI D    K+  +K  + I       N  I +    +L + PG     + EA++ 
Sbjct: 601 NGFSIGIGDTIADKQTMEKINQSIQSAKAEVNKIIAKAQRDELAVLPGMTIRLSFEALVN 660

Query: 625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
             LNR R+ AGK+   SL  +N+   M   GSKGS INISQM  CVGQQ+V G+R P GF
Sbjct: 661 KELNRARDMAGKSAERSLKEQNNVKQMVTAGSKGSFINISQMTGCVGQQNVEGKRIPFGF 720

Query: 685 IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
            DRSLPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+TGY+ R
Sbjct: 721 KDRSLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQR 780

Query: 745 RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL 791
           RL+KA+ED+ ++YD ++R++ G ++QF YG+DGMD A +E ++ E L
Sbjct: 781 RLVKAMEDVMVRYDGTIRDSLGTVIQFCYGEDGMDGAKVERQNLESL 827


>gi|312136875|ref|YP_004004212.1| DNA-directed RNA polymerase, subunit a' [Methanothermus fervidus
           DSM 2088]
 gi|311224594|gb|ADP77450.1| DNA-directed RNA polymerase, subunit A' [Methanothermus fervidus
           DSM 2088]
          Length = 870

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 287/724 (39%), Positives = 432/724 (59%), Gaps = 33/724 (4%)

Query: 84  YILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNE 140
           Y L P  V    +++ D DC +L +   + RPE +++T I VPP+ +RPS+ ++  + +E
Sbjct: 169 YKLTPTEVRERLEKIPDEDCYLLGINPSAARPEYMVLTVIPVPPVTMRPSITLETGERSE 228

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVA 199
           +D+T +L  I++ N  L++ +            WE LQ  V  Y N++  GVP +  +  
Sbjct: 229 DDLTHKLVDILRINERLRENMEAGAPELIIEDLWELLQYHVVTYFNNEASGVPPARHRSG 288

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RPL   +QRLKGK+GRFRGNLSGKRV ++ RTVISPDPNL I EV +P  +A+ LT P R
Sbjct: 289 RPLRTLMQRLKGKEGRFRGNLSGKRVNFSARTVISPDPNLSINEVGVPEIIAKELTVPVR 348

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V++ NIE++++ I+NGPDK+PGA  +  PDG    +Y + +  +  +LK G IV+RHL+D
Sbjct: 349 VNEWNIEEVKKYIKNGPDKHPGANYVIRPDGRKIKIYEENKEAILEQLKPGYIVERHLKD 408

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+VLFNRQPSLHRMS+M H  +++P++T R N  VC PYNADFDGDEMN+HV QTEEA+
Sbjct: 409 GDIVLFNRQPSLHRMSMMAHEVKVLPYKTFRLNLCVCPPYNADFDGDEMNLHVLQTEEAQ 468

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDT-FYDRAAFSLMCCYMGDGM 438
            EA  LM VQ ++ +P+ G  ++ +  D ++ ++L+T+K T F +   F ++        
Sbjct: 469 AEAKTLMKVQEHILSPRFGGPIIGAIHDHISGAYLLTKKGTKFSEDEVFQMLM------- 521

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            R  +P P   K    WTGK++FSVL+    N+            Y  ++ +   D +++
Sbjct: 522 -RAGVPLPK--KKGRDWTGKEIFSVLLPDDLNL-----------VYRAEICKNCPDCKMK 567

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
               C ND +V   N EL SG + +  +G      +   ++++YG       +N + KL+
Sbjct: 568 ---NCENDAYVLIENGELKSGVIDEKGIG-AFSGKILDRIVKEYGPDKACEFLNAVTKLA 623

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              I   GF+  + D    KE  +K  + + ++ E  N  IK Y  G+L+  PG    +T
Sbjct: 624 IAVIMKKGFTTSLRDEDIPKEAKEKIKEHLKKSEEKVNQLIKAYENGELEALPGRTLRET 683

Query: 619 LEAVITDILNRIREDAGKACMGSLPW-RNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           LE  I  +L   R+  G+     L    N  +IM+  G++GS +N++QM ACVGQQS+ G
Sbjct: 684 LETRIMQVLGEARDKTGEIAESYLDMDENHAMIMALTGARGSMLNLTQMSACVGQQSIRG 743

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            R   G+  R+LPHF +      A+GFV NS+  GL   EFFFH MGGREGLVDTA++TA
Sbjct: 744 ERVQRGYYGRTLPHFKKGDMGARARGFVYNSYRKGLDPLEFFFHAMGGREGLVDTAIRTA 803

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
            +GYM RRLI AL+DL ++ +  V ++ G ++Q  YG+DG+DPA  + +    ++ DRL 
Sbjct: 804 QSGYMQRRLINALQDLHVERNGKVVDSSGTLIQRKYGEDGVDPAKSDYEKA--VDLDRLA 861

Query: 798 MKVK 801
            +++
Sbjct: 862 EEIR 865


>gi|83320444|gb|ABC02849.1| RNA polymerase II largest subunit, partial [Coemansia reversa]
          Length = 1013

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 288/699 (41%), Positives = 422/699 (60%), Gaps = 26/699 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL   +++TD D E L +     RPE +++  + VPP+ +RPS+ MD  + +E+D+T +L
Sbjct: 139 VLQTLRKITDRDAETLGIDPYFARPEWMVLHVMPVPPMTVRPSIQMDAMRPSEDDLTYKL 198

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             I++ N  LQ+ +VE   A         LQ   A ++N++  G+P ++Q + RP+    
Sbjct: 199 SDILKANERLQRCIVEGAPAHVINEFVTLLQFHTAAFMNNEASGMPQALQKSGRPIKSIR 258

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ DPN+ I +V +P  +AR LTYPE V+ +NI+
Sbjct: 259 ARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISIDQVGVPRSIARNLTYPETVTPYNID 318

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTA-RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLF 325
           +L++ ++NG D YPGA+ +   +G    + Y K R    +++  G  V+R+L D DV++F
Sbjct: 319 RLQEYVRNGRDAYPGAKFVVRDNGEQINLQYNKQRGDFPLQI--GYRVERNLIDDDVIIF 376

Query: 326 NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
           NRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE+R E   +
Sbjct: 377 NRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEESRAEIKEI 436

Query: 386 MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPT 445
             V     +P++ + ++   QD L +    TR+D F D     L+  ++ D      LPT
Sbjct: 437 CMVPKQFISPQSNKPVMGIVQDTLCAIRKFTRRDNFLDTDMIMLLMMWLPDWDG--TLPT 494

Query: 446 PAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 505
           P ILKP  LWTGKQ++S++I P                 +N    +EG  +     + P 
Sbjct: 495 PCILKPKPLWTGKQIYSMVI-PKG---------------TNCYRESEGHPDGETTWISPG 538

Query: 506 DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
           D  VY R+ EL+ G + K T+G  ++ GL   +  ++G+ +     +   ++   W  ++
Sbjct: 539 DTKVYIRDGELVCGMVCKKTVGT-SEGGLVHTIFNEFGSESARRFFDGTQRVINNWFIHN 597

Query: 566 GFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITD 625
           GFS+GI D        +  G + +E Y   +  I+E     L+  PG    ++ E  +  
Sbjct: 598 GFSVGIGDAVTDNATMENVGTITNECYARVDRYIEEAQNDALECMPGMTIKESFEVRVNT 657

Query: 626 ILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFI 685
            LN  R+DAGK  +  L   N+   MS  GSKGS INISQ+ ACVGQQ+V G+R P GF 
Sbjct: 658 ALNNARDDAGKQVLDRLKDTNNIAQMSLAGSKGSKINISQISACVGQQNVEGKRIPFGFK 717

Query: 686 DRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRR 745
            R+LPHF +    P ++GFV NS+  GL+  EF+FH MGGREGL+DTAVKTA+TGY+ RR
Sbjct: 718 YRTLPHFGKDDYSPESRGFVRNSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRR 777

Query: 746 LIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           LIKALED+  QYD S+RN+ G IVQF+YG+DGMD   +E
Sbjct: 778 LIKALEDIMCQYDGSIRNSQGHIVQFVYGEDGMDGCFIE 816


>gi|171186406|ref|YP_001795325.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum neutrophilum
           V24Sta]
 gi|170935618|gb|ACB40879.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum neutrophilum
           V24Sta]
          Length = 884

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 294/771 (38%), Positives = 439/771 (56%), Gaps = 48/771 (6%)

Query: 14  LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTK 73
           L  ++ +K    AS+ + CP CGY                 R+KV      F       +
Sbjct: 137 LAMNLHEKIRKKASERMTCPHCGY----------------KRNKV-----RFERPYYFYE 175

Query: 74  ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPS 130
           E++    V    L+P  +     ++ + D E+L L+    RPE  I+  + VPP  +RPS
Sbjct: 176 ETEEGALVK---LDPEVLRDRLAKVPNEDLELLGLNPSVARPEWAILKVLPVPPPHVRPS 232

Query: 131 VIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVR 190
           + ++    +E+D+T +L  II+ N  L+  +            W+ LQ  VA Y ++++ 
Sbjct: 233 IQLETGIRSEDDLTHKLVDIIRMNEKLKIAIETGAPTNVVDNLWDLLQYHVATYFDNELP 292

Query: 191 GVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIR 249
           G+P +  +  RPL G  QRLKGK+GRFRG+LSGKRV ++ RTVISPDP++ I EV +P  
Sbjct: 293 GIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPHISINEVGVPYD 352

Query: 250 MARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELK 308
           +A+ILT PERV++ N++ LR+ +  GP+ +PGA  +  P+G    L Y K +  LA  L 
Sbjct: 353 IAKILTVPERVTEWNVDVLREYVMRGPETWPGANYVITPEGRRIDLRYVKDKRALAERLA 412

Query: 309 SGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEM 368
            G IV+RHL DGD+VLFNRQPSLHR+SIM H  +++P RT R + +VC PYNADFDGDEM
Sbjct: 413 PGWIVERHLVDGDIVLFNRQPSLHRVSIMGHIVKVLPGRTFRLHLAVCPPYNADFDGDEM 472

Query: 369 NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 428
           N+HVPQTEEAR EA  LM V+ ++ TP+ G  ++ + QD++  ++L+++K TF  +   +
Sbjct: 473 NLHVPQTEEARAEARTLMLVEKHIITPRYGGAIIGARQDYIIGAYLLSQKSTFLTKKELA 532

Query: 429 LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKL 488
            +   +G G    D P PA L PVELWTGKQ+ S  +    N        V+   + +K 
Sbjct: 533 YL---LGAGKSTEDPPEPAFLHPVELWTGKQVISHFLPKDLNW-------VQPTAFKSK- 581

Query: 489 IRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
                    +    C  D ++   N  ++ G L K ++G    D L+  + RDY      
Sbjct: 582 --------CQDAYRCAGDEWIIIINGVMVKGVLDKKSIGAEQVDSLWHRIARDYPPEVAR 633

Query: 549 GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
             ++   +L  R++   GF+ GID V    E   +   L+ E+ +  +  I+E+  G+L+
Sbjct: 634 RWLDSSLRLFLRYLDLRGFTFGIDSVYLPPEAYGEIDALVEESMKKADALIEEFRSGRLE 693

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
             PG    +T E  IT+IL+++REDA       +       +M++ G++GS +NI QMVA
Sbjct: 694 AMPGFTVEETFENKITEILSKVREDAAVVVEKYISKNTEGYLMAKTGARGSIVNIVQMVA 753

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            +GQQ++ G R   G+  R+LPHFP     P A GFV   F  GL+  E+FFH   GR+G
Sbjct: 754 TLGQQTIRGERIRRGYRTRTLPHFPPGDIGPHAGGFVGRCFRCGLTPVEYFFHAAAGRDG 813

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           L+DTAV+TA +GYM RRLI AL+D+ + YD +VR +G  ++Q LYG+DG+D
Sbjct: 814 LIDTAVRTAQSGYMQRRLINALQDVYVAYDGTVRFSGANLLQMLYGEDGVD 864


>gi|33326203|gb|AAQ08511.1| RNA polymerase II largest subunit [Zamia muricata]
          Length = 1013

 Score =  537 bits (1384), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 295/716 (41%), Positives = 421/716 (58%), Gaps = 25/716 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D DC++L L+    RP+ +I+  + +P   +RPSV+M+ +  +E+D
Sbjct: 134 LSAEKVLDILKRISDEDCQLLGLNPKYARPDWMILQVLPIPSPPVRPSVMMNTTARSEDD 193

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++      A       + LQ  +A Y ++D+ G P + Q + RP
Sbjct: 194 LTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNDLPGQPRATQRSGRP 253

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I ++ +P  +A  LTYPE V+
Sbjct: 254 IKSICNRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVT 313

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRY--PDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
            +NIE+L++ + NGP   PG    RY   D   R+     +      L+ G  V+RHL D
Sbjct: 314 PYNIERLKELVDNGPHPPPGKTGARYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 373

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R
Sbjct: 374 GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 433

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E L LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D   
Sbjct: 434 AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 493

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
           ++  P+P ILKP  LWTGKQ+F+++I    N+  Y     + +T       T GD  +RI
Sbjct: 494 KI--PSPTILKPRPLWTGKQVFNLIIPRQINLIRYSAWHSESETG----FITPGDTVVRI 547

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
           E              E++SG L K TLG  +   L  V+  + G  A    +     L  
Sbjct: 548 E------------KGEVLSGTLCKKTLGTSS-GSLIHVIWEEVGPDAARKFLGHTQWLVN 594

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
            W+   GFSIGI D        +   + IS+     N  I+  ++  L+  PG    ++ 
Sbjct: 595 YWLLQQGFSIGIGDTIADAATMETINETISKAKNEVNHLIQLAHQKALEAXPGRTMMESF 654

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R
Sbjct: 655 ENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 714

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P G   RSLPHF R    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++T
Sbjct: 715 IPFGLFGRSLPHFTRDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 774

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR 795
           GY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L   R
Sbjct: 775 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKR 830


>gi|6624243|dbj|BAA88486.1| RNA polymerase III largest subunit [Eptatretus burgeri]
          Length = 537

 Score =  536 bits (1381), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 280/554 (50%), Positives = 368/554 (66%), Gaps = 22/554 (3%)

Query: 369 NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 428
           N+H+PQTEEA+ EAL+LMG + N+ TP+NGE L+A+ QDFLT+++L+T KDTF DR+   
Sbjct: 1   NLHLPQTEEAKAEALVLMGTKANMVTPRNGEPLIAAIQDFLTAAYLLTHKDTFLDRSRAC 60

Query: 429 LMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS 485
            +   +  G D   R++LP PAIL PV LWTGKQ+FS+L+RP  +  +  NL  K K YS
Sbjct: 61  QLIAAILAGQDVAMRLELPPPAILCPVCLWTGKQIFSLLLRPSQSCPIMPNLRTKGKQYS 120

Query: 486 NKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAH 545
                         E +CPND FV   N EL++G L KATLG+G+K+ ++ VLL+D+G  
Sbjct: 121 GG------------EDLCPNDSFVVLHNGELLAGSLDKATLGSGSKNSIFYVLLQDWGQT 168

Query: 546 ATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEG 605
           A +  M+RLA++S  ++ + GFSIGI DV P   L   K +L+S  Y+ C+  I     G
Sbjct: 169 AATDAMSRLARISPAYLSHRGFSIGIGDVTPGPGLLCAKHELLSAGYKKCDEYISALKAG 228

Query: 606 KLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQ 665
           KLQ +PGC A +TLEAVI   L+ IR+ AGKAC+  L   NSP++M+ CGSKGS INISQ
Sbjct: 229 KLQQQPGCSAEETLEAVILKELSVIRDHAGKACLRELHKSNSPMVMALCGSKGSFINISQ 288

Query: 666 MVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGG 725
           M+ACVGQQ++ G R P+GF DRSLPHFPR +K PAAKGFVANSFYSGL+ TEFFFHTMGG
Sbjct: 289 MIACVGQQAISGSRIPDGFEDRSLPHFPRSSKLPAAKGFVANSFYSGLTPTEFFFHTMGG 348

Query: 726 REGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEG 785
           REGLVDTAVKTA+TGYM RRL+K+LEDL + YD +VR+A   +VQF+YG DG+DPA MEG
Sbjct: 349 REGLVDTAVKTAETGYMQRRLVKSLEDLCLAYDLTVRSATADVVQFIYGGDGLDPACMEG 408

Query: 786 KSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKES-CSEAFLNSLRKF 844
           +   PL   R+L  V A  P   +  LS  Q+    E+ L   G  + C +AF+  L +F
Sbjct: 409 RD-RPLEPVRVLASVFANHPCGDEIALSAIQLEAEAERLLRGEGPCAVCGKAFVEELAEF 467

Query: 845 FEGQQDKLDKKIKFVEDI-GWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVE 903
                 +L  ++K V  I G +D       + +    IT  QLE+F  TC  +Y   R+E
Sbjct: 468 LR----QLAMRVKRVRHIYGVNDNGSTEPMILYHLERITPSQLEIFFSTCCDKYLRARIE 523

Query: 904 AGTAIGAIGAQSIG 917
            G+A+GA+ AQSIG
Sbjct: 524 PGSAVGAVCAQSIG 537


>gi|83320466|gb|ABC02860.1| RNA polymerase II largest subunit, partial [Synchytrium
           macrosporum]
          Length = 808

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 298/708 (42%), Positives = 427/708 (60%), Gaps = 45/708 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           ++ P  V  LF+ ++D D E +  S    RPE ++I+ + VPP+A+RPSV  +G   +E+
Sbjct: 132 VIAPGEVKQLFESISDDDAEAMGFSPDYSRPEWMVISILPVPPMAVRPSVHQEGLGRSED 191

Query: 142 DITERLKRIIQTNASLQQELVEANSA-------FKSLAGWETLQVEVAQYINSDVRGVPF 194
           D+T +L  I++ N +L++   E + A       F++L     LQ +VA  +++D+ GVP 
Sbjct: 192 DLTHKLMDILKANNTLKKN--EQDGAPQQIIREFEAL-----LQYQVATLMDNDLAGVPQ 244

Query: 195 SMQVAR-PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           S+Q +R P+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL I +V +P  +A+ 
Sbjct: 245 SLQKSRRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIAKN 304

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIV 313
           +T+PE+V+  NIE L + ++NGP+++PGA+ +   +G    L  +     A+ L+ G IV
Sbjct: 305 MTFPEKVTPFNIEVLTKTVENGPNEHPGAKFVIRDNGDRIDL--RHARAGAIALQVGYIV 362

Query: 314 DRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVP 373
           +RH+ D DVV+FNRQPSLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMN+H+P
Sbjct: 363 ERHMRDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTTPYNADFDGDEMNLHLP 422

Query: 374 QTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMC 431
           Q+ E   E + L  V   + +P+    ++   QD L      T++DTF D       LM 
Sbjct: 423 QSYETAAEIVELCIVPKQIVSPQKNAPVMGIVQDTLCGVRKFTKRDTFLDMDIMMNLLMW 482

Query: 432 CYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRT 491
               DG     LPTP I+KP+ LWTGKQ  S++I P+      +NLT     + +K +  
Sbjct: 483 VPDWDGT----LPTPCIIKPIPLWTGKQAMSLII-PN------INLTAYHAAHPDKEV-- 529

Query: 492 EGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCM 551
            GD         P D  V   + EL+ G L K T+G+    G+    + ++G        
Sbjct: 530 -GDN-------SPGDTKVLIEHGELVMGILCKKTVGSSAGGGIIHTAVMEHGPETAKKFF 581

Query: 552 NRLAKLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLK 610
           N   ++   W+ + GFSIGI D +   + ++D    +     +V  + I    +G+L+ +
Sbjct: 582 NAAQRVVNYWLLHRGFSIGIGDTIADARSMTDINNTIQQAKTQVSEI-IAMAQQGRLEAQ 640

Query: 611 PGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACV 670
           PG    Q+ EA +   LN  R+ AGKA   SLP  N+   M   GSKGS INISQM ACV
Sbjct: 641 PGMTIRQSFEAKVNHELNNARDKAGKAAQDSLPSFNNVKQMVVAGSKGSYINISQMTACV 700

Query: 671 GQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLV 730
           GQQ+V GRR P GF  R+LPHF +    P A+GFV NS+  GL+  EFFFH MGGREGL+
Sbjct: 701 GQQNVEGRRIPYGFQYRTLPHFVKDDHSPEARGFVENSYLRGLTPQEFFFHAMGGREGLI 760

Query: 731 DTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
           DTAVKTA+TGY+ RRL+KALED+ ++YD +VRNA G +VQF YG+DGM
Sbjct: 761 DTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNAQGDVVQFCYGEDGM 808


>gi|159467413|ref|XP_001691886.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
           reinhardtii]
 gi|158278613|gb|EDP04376.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
           reinhardtii]
          Length = 1789

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 310/738 (42%), Positives = 430/738 (58%), Gaps = 53/738 (7%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L     L + KR+   DC  L       RP+ +II N+ VPP  +RPSV+MD S   E+D
Sbjct: 190 LTAARALEIMKRIPAEDCRALGFDCRFTRPDWMIIQNMPVPPPPVRPSVMMDSSSRCEDD 249

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARP 201
           +T +L  I++TN +++++                LQ  +  Y ++   G+P S Q   RP
Sbjct: 250 LTHKLAEILRTNNAIKKQDATGTPQHVIAEQIMALQYHITTYFDNSSPGIPKSNQKSGRP 309

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +    +RLKGK GR RGNL GKRV+++ RTVI+ DPN+ I E+ +P  +A  LT+PE V+
Sbjct: 310 IKSISERLKGKSGRIRGNLMGKRVDFSARTVITGDPNIGIDELGVPWSIALNLTFPETVT 369

Query: 262 DHNIEKLRQCIQNGPDKYPG---ARMIRYPDG---TARVLYGKFRNQLAVELKSG----- 310
             NIEKL++ + NGP+  PG   A+ I   DG   +  V+ G    +L    K G     
Sbjct: 370 PFNIEKLQKLVDNGPNPPPGETGAKHIIREDGRRVSLAVVKGDADRRLEPGDKVGGKGTQ 429

Query: 311 ----------CIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYN 360
                     C V+RHL +GD+VLFNRQPSLH+MS+M HR RI+P+ T R N SV  PYN
Sbjct: 430 MTADGGGVARCCVERHLINGDLVLFNRQPSLHKMSMMGHRVRILPYSTFRLNLSVTTPYN 489

Query: 361 ADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDT 420
           ADFDGDEMNMHV QT E R E   LM V  N+ +P+  + ++   QD L  + ++T++D 
Sbjct: 490 ADFDGDEMNMHVAQTHETRAEMANLMMVPRNIVSPQANKPVMGIVQDALLGTRMMTKRDI 549

Query: 421 FYDRAAFSLMCCYMG----DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
           F ++  F  M C MG    DG     +P PA+LKP  LWTGKQ+FS+ +         VN
Sbjct: 550 FIEKDNF--MNCVMGIEDWDGT----VPMPAVLKPRPLWTGKQIFSMFVPD-------VN 596

Query: 477 LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
           L  K   Y          ++  +  M  +D  V  R  EL++G L K T+GNG   GL  
Sbjct: 597 LKNKSAWY----------KDADVPDMSVDDAQVLIRQGELLTGALCKKTVGNG-AGGLVH 645

Query: 537 VLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCN 596
           +   ++G HA  G +N + +    W+ NHG SIGI D     +   K  ++I E      
Sbjct: 646 LTWLEHGPHAARGFINNVQRTVNYWVLNHGMSIGIGDTVADAKTMAKVNEIIEEAKRKVK 705

Query: 597 VKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
             +++Y +  L+ +PG    ++ EA +  ILN+ R+DAGKA   S+   N+ + M   GS
Sbjct: 706 EVVEKYQQNALEAQPGRTIHESFEAQVNQILNKCRDDAGKAAYMSVDLSNNIIKMVTAGS 765

Query: 657 KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
           KGS INISQM+ CVGQQ+V G+R P GF +R+LPHF +    P A+GFV NS+  GL+  
Sbjct: 766 KGSNINISQMMGCVGQQNVEGKRIPFGFQNRTLPHFNKDDLGPEARGFVGNSYLRGLTPQ 825

Query: 717 EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDD 776
           EFFFH MGGREGL+DTAVKTA TGY+ RRL+KA+ED+ ++Y  +VRN+ G +VQFLYG+D
Sbjct: 826 EFFFHAMGGREGLIDTAVKTASTGYIQRRLVKAMEDMVVRYGGTVRNSQGDVVQFLYGED 885

Query: 777 GMDPANMEGKSGEPLNFD 794
           GMD   +EG+  E L +D
Sbjct: 886 GMDAVRIEGQMFEYLKWD 903



 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 148/526 (28%), Positives = 241/526 (45%), Gaps = 86/526 (16%)

Query: 782  NMEGKSGEPLNFDRLLM--KVKATCPPAGQRYLSPQ------QVSEIVEKQLAAYGKESC 833
            N + K   PLN  RL+   + K  C P    +   Q      +V E+ E+ +   G +  
Sbjct: 963  NGDEKVNIPLNLARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGL 1022

Query: 834  S-EAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQT 892
            S EA  N+   F    +  L  K             +++ E       +  K L+  +  
Sbjct: 1023 SVEAQRNATIMFHSLVRMHLASK-------------RVMSEYK-----LNNKALDWLLGE 1064

Query: 893  CFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGA 952
              +R+ + +  AG  +G + AQS+GEP TQMTL TFHFAGV++ N+T GVPR+ E+IN A
Sbjct: 1065 LETRFFLAQAHAGECVGTVAAQSLGEPTTQMTLNTFHFAGVSAKNVTLGVPRLTELINLA 1124

Query: 953  KRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKI----VMTSRLASIVIA 1006
            K I TP +T  L     +N++AA+ ++ ++E T    V K+ +I    V  +     VI 
Sbjct: 1125 KNIKTPTLTVHLLPGLRENKDAAKEIQSKLEYTCFKNVVKTTEIWYDPVDPANANQTVIG 1184

Query: 1007 LDMETIQD----------------AHLCINADIVKESIV--------------------- 1029
             D E +                  +H  +  ++ + +++                     
Sbjct: 1185 EDEEMLSSYYDLAGDEDLAVLPRLSHWLLRFELNRGAMLDKGLTLGAVQKALQDEWEDFI 1244

Query: 1030 -------QTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTV 1082
                      K+ ++ + +K  +  K E   P + +     +  L   +  V + G+  +
Sbjct: 1245 NVLVNDDNAEKLIMRIRVVKTEEASKDESADPTEDT-----MLKLSGAIMDVRLHGVPNI 1299

Query: 1083 ERVVIAEKEKEKRKVKENGEKKKYR---LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQ 1139
             +V I   E +    KE G  +KY    L  EG  L+ V+  EG+D  +T SN I EV +
Sbjct: 1300 RKVFI-RAENQHVYDKEKGAFRKYEEWILDTEGINLEQVLAFEGVDSRRTMSNSIIEVLE 1358

Query: 1140 TLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVL 1199
             LGIEAAR  +  E+   ++  G  ++ RH+  L D+MT +G ++ ITR GI +     +
Sbjct: 1359 VLGIEAARAALFKEVRNVIQFDGSYVNYRHLACLVDIMTCKGCLMAITRHGINRNGNGPM 1418

Query: 1200 MLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               SFE+T D L+ A++ G  D++ GVS+ I+MG   PLGTG   +
Sbjct: 1419 TQCSFEETVDILYRAAMFGERDKLMGVSDNIMMGNMCPLGTGSFDL 1464


>gi|120561225|gb|ABM26998.1| RNA polymerase II largest subunit, partial [Allomyces macrogynus]
          Length = 1008

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 312/751 (41%), Positives = 441/751 (58%), Gaps = 32/751 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+P  VL + K+++D DCE + L     RPE +I+T   VPP  +RPS+++DG+   E+D
Sbjct: 126 LSPSQVLQILKKISDEDCEAMGLDPVFARPEWMILTVFPVPPPPVRPSILVDGTSRGEDD 185

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARP 201
           +T +L  II+ NA LQ+   +     +     + LQ  VA ++++++ G+P +MQ   RP
Sbjct: 186 LTFKLCDIIKANAFLQKAEADGVPGHRIKDHEDLLQFHVATFVDNEISGMPRAMQRSGRP 245

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL I +V +P  +AR LTYPE V+
Sbjct: 246 IKAIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIARNLTYPEIVT 305

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
            +NI KL++ + NGP ++PGA+ +   +G  RV       +  + L+ G IV+RHL+DGD
Sbjct: 306 PYNINKLQELVHNGPTQHPGAKYVIRDNGD-RVDLRFIGAKGNLGLQYGWIVERHLDDGD 364

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           V++FNRQPSLH+MS+M H+ ++MP+ T R N SV +PYNADFDGDEMNMHVPQ+ EA+ E
Sbjct: 365 VIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSLEAKAE 424

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMD 439
              L  V   + +P++ + ++   QD L      TR+DTF D+      LM     DG  
Sbjct: 425 IQQLCMVPLQIISPQSNKPVMGIVQDTLCGITKFTRRDTFMDKNMVMNLLMWVPNWDG-- 482

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
             ++P PAI+KP  LWTGKQ+ S++I         VN      T+ +       DE   I
Sbjct: 483 --NVPPPAIMKPKPLWTGKQILSLVI-------PKVNCITHHSTHPD-------DESTDI 526

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
               P D  V   + EL++G + K T+G     GL  V   ++G  A    +N    +  
Sbjct: 527 ---SPGDTRVIVEDGELLAGIVCKKTVGAA-AGGLVHVSWMEHGPEAAKALLNGCQTIVN 582

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
            W+ ++GFSIGI D         +  K+I+   +     I     G+L+   G    +T 
Sbjct: 583 YWLLHNGFSIGIGDTIADDATMAQINKIIASARDTVKQTIHTAQRGQLKAMTGMTLRETF 642

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           EA +   LN     AG A   S    N+   M   GSKGS INISQM ACVGQQ+V G+R
Sbjct: 643 EAQVNRALNEAVNKAGSAAAKSFKVSNNVKQMVVSGSKGSNINISQMSACVGQQNVEGKR 702

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GF  RSLPHF +    P ++GFV NS+  GLS  EFFFH MGGREGL+DTAVKTA+T
Sbjct: 703 IPFGFQYRSLPHFVKDDYSPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAET 762

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL--NFDRLL 797
           GY+ RRLIKALED+ ++YD +VRNA G I+QF YG+DGMD   +E +  EPL  N  R  
Sbjct: 763 GYIQRRLIKALEDIMVKYDGTVRNAQGHIIQFAYGEDGMDGTRVEAQILEPLRMNNHRFE 822

Query: 798 MKVKAT-CPPAGQRYLSPQQVSEIVEKQLAA 827
            + +     P G++ L P  V   +++++ +
Sbjct: 823 RRYRIDLTDPEGKKGLKPGSVEFGIQQEMQS 853


>gi|83320454|gb|ABC02854.1| RNA polymerase II largest subunit, partial [Spiromyces aspiralis]
          Length = 1022

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 298/710 (41%), Positives = 425/710 (59%), Gaps = 32/710 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L    VL + KR++D D   + L     RPE +I+T + VPP+A+RPS+ MD  + +E+D
Sbjct: 144 LTVTQVLQVLKRISDEDAYAMGLDPQYARPEWMIMTVMPVPPMAVRPSIQMDAVRQSEDD 203

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA-R 200
           +T +L  I++ NA ++   V+  +    +  +E+L Q  V  ++N+++ G+P ++Q + R
Sbjct: 204 LTYKLNDILKANARVRSCEVDG-APMHIIEDFESLLQFHVVTFMNNEISGLPQALQKSGR 262

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           P+     RLKGK+GR RGNL GKRV+++ RTVI+ DPN+ I EV +P  +AR LTYPE V
Sbjct: 263 PIRSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISIDEVGVPRSIARNLTYPEVV 322

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           + +NIEKL++ ++NGP ++PGA+ +   D   R+     +    + L  G  V+RH+ DG
Sbjct: 323 TPYNIEKLQELVRNGPTEHPGAKYV-IRDTGERIDLRYNKRGGDIPLAIGYRVERHIMDG 381

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           DVV+FNRQPSLH+MS+M HR R++P+ T R N SV +PYNADFDGDEMNMHVPQ+EE+R 
Sbjct: 382 DVVIFNRQPSLHKMSMMGHRVRVLPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEESRA 441

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DRAAFSLMCCYMGDGM 438
           E   +  V   + +P+    ++   QD L +    TR+D F   D     LM     DG 
Sbjct: 442 EIKEICMVPRQIISPQANSPVMGIVQDTLCAIRKFTRRDNFMAKDLVMNILMHIPDWDGT 501

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEI 497
               +PTPAI+KP  LWTGKQ++S+ I    N +R +      E T+             
Sbjct: 502 ----VPTPAIIKPKPLWTGKQIYSLAIPKGINCLRFHSTHPDNETTF------------- 544

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
               + P D  V   + EL++G + K T+ + ++  L  V++ + G        N   ++
Sbjct: 545 ----VSPGDTRVIIEDGELLAGIICKKTV-DASEGSLVHVVMAERGPEVAKKFFNTTQRI 599

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
              W   +GFSIGI D     +       +I E Y+  +  I +  E +++  PG    +
Sbjct: 600 VDYWFLQNGFSIGIGDTIADDDTMLNVSNIIKEAYDRVDQIIIDAQEDRMEAMPGMTYRE 659

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           + E  +   LNR R+ AGK     L   N+   M   GSKGS IN+SQM A VGQQ+V G
Sbjct: 660 SFENRVNKELNRARDQAGKLVQQRLKESNNVRQMVVAGSKGSYINVSQMTAAVGQQNVEG 719

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    PA+KGFV NS+  GL+  EFFFH MGGREGL+DTAVKTA
Sbjct: 720 KRIPFGFRYRTLPHFAKDDYSPASKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTA 779

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           +TGY+ RRLIKALEDL +QYD SVRN+ G IVQF YG+DGMD  ++EG+S
Sbjct: 780 ETGYIQRRLIKALEDLMVQYDGSVRNSLGQIVQFTYGEDGMDSTHLEGQS 829


>gi|320166366|gb|EFW43265.1| polymerase II polypeptide A [Capsaspora owczarzaki ATCC 30864]
          Length = 1792

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 292/713 (40%), Positives = 422/713 (59%), Gaps = 23/713 (3%)

Query: 78  AVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMD 134
           A+   T  L+P     + KR++D DC  L  +    RP+ +IIT + VPP+ +RPSV+MD
Sbjct: 224 ALPTGTQTLSPEKAHEILKRISDEDCRALGFNPEQGRPDWMIITVLPVPPMTVRPSVVMD 283

Query: 135 GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPF 194
                 +D+T +L  II+ N +L+Q+ +  + A       + LQ  VA Y ++++ GV  
Sbjct: 284 SVARGIDDLTHKLADIIKANHNLRQQELRGSPAHIMEEYTKLLQYHVATYADNEIPGVAT 343

Query: 195 SMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           + Q + RPL    QR+KGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +A  
Sbjct: 344 AQQKSGRPLKSIRQRMKGKEGRIRGNLMGKRVDFSARTVITADPNLSLDEVGVPRSIALN 403

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIV 313
           LT+PE V+ +NI+++ + ++ G  ++PGA+ +   DGT   L         + L+ G  V
Sbjct: 404 LTFPEMVTPYNIDRMYELVRRGALEHPGAKYVIRDDGTRIDLRFSRTQGQEIHLEPGYRV 463

Query: 314 DRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVP 373
           +RH+ DGD V+FNRQPSLH+MS+M HR R++PW T R N SV  PYNADFDGDEMN+HVP
Sbjct: 464 ERHIVDGDPVIFNRQPSLHKMSMMGHRIRVLPWSTFRLNLSVTTPYNADFDGDEMNLHVP 523

Query: 374 QTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCY 433
           Q  E R E   +M V   + TP     ++   QD LT S  +T++DTF +      +  +
Sbjct: 524 QNLETRAEVTEIMSVSRQILTPAGNRPVMGIVQDTLTGSRKLTKRDTFIEMDLMMQLLMW 583

Query: 434 MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
           +      V  P PAILKP  +WTGKQ+FS++I         VNLT   +T+S     T  
Sbjct: 584 LPGWTGHV--PQPAILKPRPMWTGKQIFSMIIPAE------VNLT---RTHS-----THD 627

Query: 494 DEEIR--IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCM 551
           DEE +     M P+D  V      L+SG + K TLG  +  GL  +L +++G        
Sbjct: 628 DEEDKGNYVHMSPSDTKVLIEKGRLLSGIICKKTLGP-SAGGLIHILFKEWGHEVARNFF 686

Query: 552 NRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
           N   ++   W+   G SIGI D         +    I    E     ++    G+L+  P
Sbjct: 687 NACQRVVNYWLMWEGHSIGIGDAVADDATMMQVEDAIRRAKEDVKKVVESAQHGRLESTP 746

Query: 612 GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
           G    +T E  +   LN  REDAGK    SL   N+  +M+  GSKGS +NISQ++ACVG
Sbjct: 747 GNTLRETFENEVNKYLNNAREDAGKKVQDSLGDFNNFRLMAVAGSKGSVLNISQVIACVG 806

Query: 672 QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
           QQ+V G+R P GF  R+LPHF +    P ++GFV NS+  GL+ +EFFFH MGGREG++D
Sbjct: 807 QQNVEGKRIPFGFRFRTLPHFVKDDYGPESRGFVENSYLKGLTPSEFFFHAMGGREGVID 866

Query: 732 TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           TAVKT++TGY+ RRL+K +ED+ ++YD +VRN+ G ++QF+YG+DG+D A++E
Sbjct: 867 TAVKTSETGYIQRRLVKCMEDVMVKYDGTVRNSLGDVIQFVYGEDGLDGAHLE 919



 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 205/422 (48%), Gaps = 60/422 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +  +  E  +    SR++  +VE G  +GA+ AQS+GEP TQMTL TFHFAGV++ N+T 
Sbjct: 1078 LHSQAFEWLLGEIESRFQQAKVEPGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTL 1137

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRL 1000
            GVPR++E+IN +K   TP +T  L+   ++  A+ V  R+E T L ++    +I      
Sbjct: 1138 GVPRLRELINVSKSPKTPSLTVYLQSGMDQERAKDVACRLEHTTLLKITTHTEIYYDPNP 1197

Query: 1001 ASIVIALDMETIQDAH-LCINADIVKESIVQTPKIKLKQQHIKVLDFRKLE--------- 1050
             + V+  D   + D + +  + +I+K       +++L +   K +++R+L          
Sbjct: 1198 LASVVEEDQSFVNDYYEMPDDPEILKHISPWLLRMELDR---KQMEYRRLTMERVAEKIT 1254

Query: 1051 ---------IFPPVDKSKIHFELYSLK--------------------------------- 1068
                     IF   +  K+  ++  LK                                 
Sbjct: 1255 ADFGNDLHVIFSDDNADKLILQIRMLKKTSEGDGESGDKNPEDELRSGAADDTFLRKLIP 1314

Query: 1069 NVLPMVIVKGIKTVERVVIAEKEKEKRK-----VKENGEKKKYRLLVEGTGLQAVMGAEG 1123
            N L  + ++G++ + +V + +K ++        +  +   K++ L  +G+ L   +    
Sbjct: 1315 NYLWPLTLQGLEDIAKVYMTQKNRKHFHPVTGALVNDKNVKEWVLETDGSSLLLALSQPN 1374

Query: 1124 IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
            +D  +T SN I E+ + LG+EA R  +  E++     +G+ I+ RH+ LL D+MT RG +
Sbjct: 1375 VDVTRTVSNDIVEIMRVLGVEAVRQSLFKEMHAVYSLYGIYINYRHLALLCDVMTARGHI 1434

Query: 1184 LGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGIL 1243
            + +TR GI  +D   LM  SFE+T + L  A+ +   D + G SE II+G   P+GTG  
Sbjct: 1435 MAVTRHGINGLDTGPLMRCSFEETVEILVTAAQHSETDWLRGPSENIILGQLAPVGTGYF 1494

Query: 1244 KI 1245
             +
Sbjct: 1495 DL 1496


>gi|227830881|ref|YP_002832661.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
           L.S.2.15]
 gi|229579767|ref|YP_002838166.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
           Y.G.57.14]
 gi|229581564|ref|YP_002839963.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
           Y.N.15.51]
 gi|227457329|gb|ACP36016.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
           L.S.2.15]
 gi|228010482|gb|ACP46244.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012280|gb|ACP48041.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
           Y.N.15.51]
          Length = 880

 Score =  535 bits (1377), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 291/720 (40%), Positives = 428/720 (59%), Gaps = 24/720 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++    +++ ++D E+L     + RPE +I+T + VPPI IRPS++++     E+D
Sbjct: 175 LTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDD 234

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  I++ N  L++ +            W+ LQ  VA Y ++++ G+P S  +  RP
Sbjct: 235 LTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRP 294

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRGNLSGKRV+++ RTVISPDPN+ I EV +P  +AR LT PER++
Sbjct: 295 LRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIARTLTVPERIT 354

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
             NIEKLRQ + NGPDK+PGA  +  PDG    L Y K R +LA  L  G +V+RHL DG
Sbjct: 355 PWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYVVERHLTDG 414

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           DVVLFNRQPSLHR+S+M HR R++   T R N  VC PYNADFDGDEMN+HVPQ+EEA  
Sbjct: 415 DVVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIA 474

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           EA  +M V  N+ TP+ G  ++ + QD+++ ++L+T K T   +     +   +G    +
Sbjct: 475 EAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQI---LGVADVK 531

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           +DL  PAIL P E +TGKQ+ S  +    N     N++   +   N+             
Sbjct: 532 IDLGEPAILAPREYYTGKQIVSAFLPKDFNFHGQANVSSGPRLCKNE------------- 578

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             CP+D +V  +N  L+ G   K  +GN   + +   L+++Y        M+ L ++  R
Sbjct: 579 -DCPHDSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIR 637

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           ++   GF++ ++DV    ++  +    I       N  I++Y  G+L+  PG    ++LE
Sbjct: 638 FVELQGFTMRLEDVSLGDDVKKEIYNEIDRAKVEVNNLIQKYKNGELEPIPGRTLEESLE 697

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
             I D L+++R  AG      L   N   +M++ G++GS +NI+QM A +GQQSV G R 
Sbjct: 698 NYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLGQQSVRGERI 757

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
             G++ R+LPHF      P A+GF+ +SF +GL  TE FFH  GGREGLVDTAV+T+ +G
Sbjct: 758 KRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSG 817

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           YM RRLI AL DL  +YD +VR+  G ++Q  YGDDG+ P  M    G+ ++ +R+  +V
Sbjct: 818 YMQRRLINALSDLRAEYDGTVRSLYGEVIQVAYGDDGVFP--MYSAHGKTVDVNRIFERV 875


>gi|15897171|ref|NP_341776.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus P2]
 gi|284174417|ref|ZP_06388386.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
           98/2]
 gi|384433684|ref|YP_005643042.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
           98/2]
 gi|17368575|sp|Q980R2.1|RPOA1_SULSO RecName: Full=DNA-directed RNA polymerase subunit A'
 gi|167744881|pdb|2PMZ|A Chain A, Archaeal Rna Polymerase From Sulfolobus Solfataricus
 gi|167744892|pdb|2PMZ|Q Chain Q, Archaeal Rna Polymerase From Sulfolobus Solfataricus
 gi|239782143|pdb|3HKZ|A Chain A, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
 gi|239782156|pdb|3HKZ|I Chain I, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
 gi|13813360|gb|AAK40566.1| DNA-directed RNA polymerase, subunit A' (rpoA1) [Sulfolobus
           solfataricus P2]
 gi|261601838|gb|ACX91441.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
           98/2]
          Length = 880

 Score =  534 bits (1376), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 294/724 (40%), Positives = 430/724 (59%), Gaps = 32/724 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++    +++ D+D E+L     + RPE +I+T + VPPI IRPS++++     E+D
Sbjct: 175 LTPSDIRERLEKIPDSDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDD 234

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  I++ N  L++ +            W+ LQ  VA Y ++++ G+P S  +  RP
Sbjct: 235 LTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRP 294

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRGNLSGKRV+++ RTVISPDPN+ I EV +P  +A+ LT PER++
Sbjct: 295 LRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIAKTLTVPERIT 354

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
             NIEKLRQ + NGPDK+PGA  +  PDG    L Y K R +LA  L  G I++RHL DG
Sbjct: 355 PWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYIIERHLIDG 414

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D+VLFNRQPSLHR+S+M HR R++   T R N  VC PYNADFDGDEMN+HVPQ+EEA  
Sbjct: 415 DIVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIA 474

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           EA  +M V  N+ TP+ G  ++ + QD+++ ++L+T K T   +     +   +G    +
Sbjct: 475 EAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQI---LGVADVK 531

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           +DL  PAIL P E +TGKQ+ S  +    N     N++   +   N+             
Sbjct: 532 IDLGEPAILAPREYYTGKQVISAFLPKDFNFHGQANVSSGPRLCKNE------------- 578

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             CP+D +V  +N  L+ G   K  +GN   + +   L+++Y        M+ L ++  R
Sbjct: 579 -DCPHDSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIR 637

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVK----IKEYNEGKLQLKPGCDAA 616
           ++   GF++ ++DV     L D   K I    +   V+    I++Y  G+L+  PG    
Sbjct: 638 FVELQGFTMRLEDVS----LGDDVKKEIYNEIDRAKVEVDNLIQKYKNGELEPIPGRTLE 693

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           ++LE  I D L+++R  AG      L   N   +M++ G++GS +NI+QM A +GQQSV 
Sbjct: 694 ESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLGQQSVR 753

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G R   G++ R+LPHF      P A+GF+ +SF +GL  TE FFH  GGREGLVDTAV+T
Sbjct: 754 GERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRT 813

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           + +GYM RRLI AL DL  +YD +VR+  G +VQ  YGDDG+ P  M    G+ ++ +R+
Sbjct: 814 SQSGYMQRRLINALSDLRAEYDGTVRSLYGEVVQVAYGDDGVFP--MYSAHGKTVDVNRI 871

Query: 797 LMKV 800
             +V
Sbjct: 872 FERV 875


>gi|238620364|ref|YP_002915190.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
           M.16.4]
 gi|238381434|gb|ACR42522.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
           M.16.4]
          Length = 880

 Score =  534 bits (1376), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 291/720 (40%), Positives = 428/720 (59%), Gaps = 24/720 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++    +++ ++D E+L     + RPE +I+T + VPPI IRPS++++     E+D
Sbjct: 175 LTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDD 234

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  I++ N  L++ +            W+ LQ  VA Y ++++ G+P S  +  RP
Sbjct: 235 LTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRP 294

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRGNLSGKRV+++ RTVISPDPN+ I EV +P  +AR LT PER++
Sbjct: 295 LRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIARTLTVPERIT 354

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
             NIEKLRQ + NGPDK+PGA  +  PDG    L Y K R +LA  L  G +V+RHL DG
Sbjct: 355 PWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYVVERHLTDG 414

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           DVVLFNRQPSLHR+S+M HR R++   T R N  VC PYNADFDGDEMN+HVPQ+EEA  
Sbjct: 415 DVVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIA 474

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           EA  +M V  N+ TP+ G  ++ + QD+++ ++L+T K T   +     +   +G    +
Sbjct: 475 EAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQI---LGVADVK 531

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           +DL  PAIL P E +TGKQ+ S  +    N     N++   +   N+             
Sbjct: 532 IDLGEPAILAPREYYTGKQIVSAFLPKDFNFHGQANVSSGPRLCKNE------------- 578

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             CP+D +V  +N  L+ G   K  +GN   + +   L+++Y        M+ L ++  R
Sbjct: 579 -DCPHDSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIR 637

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           ++   GF++ ++DV    ++  +    I       N  I++Y  G+L+  PG    ++LE
Sbjct: 638 FVELQGFTMRLEDVSLGDDVKQEIYNEIDRAKVEVNNLIQKYKNGELEPIPGRTLEESLE 697

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
             I D L+++R  AG      L   N   +M++ G++GS +NI+QM A +GQQSV G R 
Sbjct: 698 NYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLGQQSVRGERI 757

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
             G++ R+LPHF      P A+GF+ +SF +GL  TE FFH  GGREGLVDTAV+T+ +G
Sbjct: 758 KRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSG 817

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           YM RRLI AL DL  +YD +VR+  G ++Q  YGDDG+ P  M    G+ ++ +R+  +V
Sbjct: 818 YMQRRLINALSDLRAEYDGTVRSLYGEVIQVAYGDDGVFP--MYSAHGKTVDVNRIFERV 875


>gi|227828174|ref|YP_002829954.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
           M.14.25]
 gi|229585403|ref|YP_002843905.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
           M.16.27]
 gi|385773844|ref|YP_005646411.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
           HVE10/4]
 gi|385776479|ref|YP_005649047.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
           REY15A]
 gi|227459970|gb|ACP38656.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
           M.14.25]
 gi|228020453|gb|ACP55860.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
           M.16.27]
 gi|323475227|gb|ADX85833.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
           REY15A]
 gi|323477959|gb|ADX83197.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
           HVE10/4]
          Length = 880

 Score =  534 bits (1376), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 291/720 (40%), Positives = 428/720 (59%), Gaps = 24/720 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++    +++ ++D E+L     + RPE +I+T + VPPI IRPS++++     E+D
Sbjct: 175 LTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDD 234

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  I++ N  L++ +            W+ LQ  VA Y ++++ G+P S  +  RP
Sbjct: 235 LTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRP 294

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRGNLSGKRV+++ RTVISPDPN+ I EV +P  +AR LT PER++
Sbjct: 295 LRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIARTLTVPERIT 354

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
             NIEKLRQ + NGPDK+PGA  +  PDG    L Y K R +LA  L  G +V+RHL DG
Sbjct: 355 PWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYVVERHLTDG 414

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           DVVLFNRQPSLHR+S+M HR R++   T R N  VC PYNADFDGDEMN+HVPQ+EEA  
Sbjct: 415 DVVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIA 474

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           EA  +M V  N+ TP+ G  ++ + QD+++ ++L+T K T   +     +   +G    +
Sbjct: 475 EAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQI---LGVADVK 531

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           +DL  PAIL P E +TGKQ+ S  +    N     N++   +   N+             
Sbjct: 532 IDLGEPAILAPREYYTGKQIVSAFLPKDFNFHGQANVSSGPRLCKNE------------- 578

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             CP+D +V  +N  L+ G   K  +GN   + +   L+++Y        M+ L ++  R
Sbjct: 579 -DCPHDSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIR 637

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           ++   GF++ ++DV    ++  +    I       N  I++Y  G+L+  PG    ++LE
Sbjct: 638 FVELQGFTMRLEDVSLGDDVKKEIYNEIDRAKVEVNNLIQKYKNGELEPIPGRTLEESLE 697

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
             I D L+++R  AG      L   N   +M++ G++GS +NI+QM A +GQQSV G R 
Sbjct: 698 NYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLGQQSVRGERI 757

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
             G++ R+LPHF      P A+GF+ +SF +GL  TE FFH  GGREGLVDTAV+T+ +G
Sbjct: 758 KRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSG 817

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           YM RRLI AL DL  +YD +VR+  G ++Q  YGDDG+ P  M    G+ ++ +R+  +V
Sbjct: 818 YMQRRLINALSDLRAEYDGTVRSLYGEVIQVAYGDDGVFP--MYSAHGKTVDVNRIFERV 875


>gi|83320430|gb|ABC02842.1| RNA polymerase II largest subunit, partial [Cladochytrium
           replicatum]
          Length = 981

 Score =  534 bits (1376), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 308/723 (42%), Positives = 431/723 (59%), Gaps = 37/723 (5%)

Query: 81  VATYILNPVN-----VLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVI 132
           VA Y  +P +     VL LF+ ++++D E + LS    RPE +II  + VPP+++RPSV 
Sbjct: 98  VARYDADPTDQVSSKVLALFESISESDQEAMGLSPEWARPEWMIIQVLLVPPLSVRPSVH 157

Query: 133 MDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGV 192
           MDG   +E+D+T +L  II+ N +L++   + +           LQ  VA Y+N+++ GV
Sbjct: 158 MDGMGRSEDDLTHKLMDIIKANNNLRKHEADGSPPHLVTDLESILQYHVATYMNNELSGV 217

Query: 193 PFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMA 251
           P + Q + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPN+ I +V +P  +A
Sbjct: 218 PTATQKSGRPIKSIRDRLKGKEGRLRGNLMGKRVDFSARTVITGDPNISIDQVGVPRSIA 277

Query: 252 RILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGC 311
           R LT+PE V+  N E+L+Q ++NGP ++PGAR I   +G    L  ++ N+  V L+ G 
Sbjct: 278 RNLTFPETVTAANQERLQQLVRNGPTEHPGARYIIRENGDRIDL--RYSNRSEVSLQVGY 335

Query: 312 IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMH 371
            V+RHL D D V+FNRQPSLH+M +M HR ++MP+ T R N SV +PYNADFDGDEMN+H
Sbjct: 336 RVERHLMDDDFVIFNRQPSLHKMGMMGHRVKVMPFSTFRLNLSVTSPYNADFDGDEMNLH 395

Query: 372 VPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DRAAFSL 429
           VPQ+ E R E + L  V   + +P+    ++   QD L     +TR+D F   D     L
Sbjct: 396 VPQSHETRAEIMELCMVPRQIVSPQKNAPVMGIVQDTLCGIRKLTRRDCFLTMDLMKNIL 455

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           M     DG+    +P PAILKPV LWTGKQ  S L+ P  NM   +    +     + L+
Sbjct: 456 MWVPNWDGV----VPMPAILKPVPLWTGKQAIS-LVLPKVNM---IGFHSQHPDGEHTLV 507

Query: 490 RTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSG 549
            + GD  ++IE              EL+ G L K T+G+ +  G+  + + D G      
Sbjct: 508 -SPGDTRVQIE------------EGELLMGILCKQTVGSSS-GGIIHIAMNDLGHEQCKM 553

Query: 550 CMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLI-SENYEVCNVKIKEYNEGKLQ 608
                  +   W+ ++GFSIGI D        D     I S   EV  + I     G LQ
Sbjct: 554 FFEGAQAVVNYWLLHNGFSIGIGDTITDATTMDHVNLTIESAKLEVEKI-IATAQAGTLQ 612

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
            KPG    ++ E+++   L R RE  G     SL  +N+   M   GSKGS INISQ++A
Sbjct: 613 RKPGMTVRESFESLVNYELGRARERTGARSTNSLREQNNFKQMVVAGSKGSNINISQIMA 672

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
           CVGQQ+V G+R P GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREG
Sbjct: 673 CVGQQNVEGKRIPFGFKGRTLPHFKKDDHSPQSRGFVENSYLRGLTPQEFFFHAMGGREG 732

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSG 788
           L+DTAVKTA+TGY+ RRL+KALEDLS++YD++VR+A G IVQF+YGDDGMD A +E ++ 
Sbjct: 733 LIDTAVKTAETGYIQRRLVKALEDLSVKYDSTVRDAVGNIVQFVYGDDGMDGAKVEKQTL 792

Query: 789 EPL 791
           E +
Sbjct: 793 ESM 795


>gi|159040772|ref|YP_001540024.1| DNA-directed RNA polymerase subunit A' [Caldivirga maquilingensis
           IC-167]
 gi|157919607|gb|ABW01034.1| DNA-directed RNA polymerase subunit A' [Caldivirga maquilingensis
           IC-167]
          Length = 889

 Score =  534 bits (1375), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 287/724 (39%), Positives = 438/724 (60%), Gaps = 35/724 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+PV++    +++ D D E+L     + RPE  ++T + VPP  +RPS+ +   Q++ +D
Sbjct: 188 LDPVSIREWLEKVPDDDLELLGWNPSTARPEWAVLTVLPVPPPQVRPSIQLPSGQTSADD 247

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRG-VPFSMQVARP 201
           +T  L  I++ N  L+  +   +     L  W++LQ  VA YI++++ G +    +  RP
Sbjct: 248 LTHALTTILRYNEKLRNAIESGSPTTSILDLWDSLQANVATYIDNELPGGIQARHRSKRP 307

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L G  QRLKGK+GRFRG+LSGKRVE++ RTVISPDPNL I EV +PI +A+ LT  E V+
Sbjct: 308 LKGIAQRLKGKEGRFRGSLSGKRVEFSARTVISPDPNLSINEVGVPIDIAKELTVVEPVT 367

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
           + NI+ +R  + NGP+ +PGA  +  PDG    L   + R++LA +++ G +++RHL DG
Sbjct: 368 EWNIDLMRMLVVNGPETWPGANRVITPDGKKIELKVRRDRSELAQQIQPGWMIERHLMDG 427

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D VLFNRQPSLH+MS+MCH  +++P RT R + +VC PYNADFDGDEMN+HVPQT EAR 
Sbjct: 428 DYVLFNRQPSLHKMSMMCHIVKVLPGRTFRLHLAVCPPYNADFDGDEMNLHVPQTPEARA 487

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           EA  +M VQN + TP+ G  ++ + QD+++  +L++RK     R     +   +G   + 
Sbjct: 488 EARTIMLVQNFIVTPRYGGPIIGARQDYISGGYLLSRKGNVLTREKALFI---LGAVREN 544

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           V L  PAI+ PVELWTGKQ+ S L+    N   +   T  + T S+              
Sbjct: 545 VQLEEPAIMHPVELWTGKQIISTLLPKDFN---FTQATSFKSTCSDPY------------ 589

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             C  D ++   N  L +G L K ++G    D L  VL++ YG       ++ + +L  R
Sbjct: 590 -RCDTDEYIVVVNGYLATGVLDKKSIGAEQVDSLLHVLVKRYGNEFGRRWIDSMFRLIIR 648

Query: 561 WIGNHGFSIGIDDVQ-PK---KELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           +I   GF++ +D +  P+   K+L + K   I E YE+ +    +Y +G L+ +PG    
Sbjct: 649 YIDIRGFTMALDSLNLPEDAMKKLDEVKNTYIKEAYELLD----KYYKGALEAEPGKTIE 704

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           +TLE  + + L++IRE+A K     +   +   IM++ G++GS +N +QM A +GQQ++ 
Sbjct: 705 ETLEDKLAETLSKIREEASKIVDDYMNKESEVYIMAKTGARGSLLNAAQMTAALGQQTIR 764

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G R   GF DR+LPHF    K P A+GFV ++F  GLS  E+FFH  GGR+GLV+TAV+T
Sbjct: 765 GERYRRGFTDRTLPHFLPGDKGPEARGFVKSNFRDGLSPIEYFFHAGGGRDGLVETAVRT 824

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           + +GY  RRLI A++D+ + YD +VR++   I+QF YG+DG+D +  +      LN D +
Sbjct: 825 SQSGYAQRRLINAMQDIYVAYDGTVRDSQDAIIQFKYGEDGIDVSKSDHGR---LNIDEI 881

Query: 797 LMKV 800
           + +V
Sbjct: 882 IRRV 885


>gi|237823477|pdb|2WAQ|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
           Directed Rna Polymerase
 gi|237823490|pdb|2WB1|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
           Directed Rna Polymerase
 gi|237823512|pdb|2WB1|W Chain W, The Complete Structure Of The Archaeal 13-Subunit Dna-
           Directed Rna Polymerase
 gi|323462788|pdb|2Y0S|A Chain A, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
           P21 Space Group
 gi|323462810|pdb|2Y0S|W Chain W, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
           P21 Space Group
 gi|400260742|pdb|4AYB|A Chain A, Rnap At 3.2ang
 gi|400260759|pdb|4B1O|A Chain A, Archaeal Rnap-Dna Binary Complex At 4.32ang
 gi|400260785|pdb|4B1P|W Chain W, Archaeal Rnap-Dna Binary Complex At 4.32ang
 gi|219814429|gb|ACL36488.1| RNA polymerase subunit 1N [Sulfolobus shibatae B12]
          Length = 880

 Score =  534 bits (1375), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 294/724 (40%), Positives = 430/724 (59%), Gaps = 32/724 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++    +++ ++D E+L     + RPE +I+T + VPPI IRPS++++     E+D
Sbjct: 175 LTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDD 234

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  I++ N  L++ +            W+ LQ  VA Y ++++ G+P S  +  RP
Sbjct: 235 LTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRP 294

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRGNLSGKRV+++ RTVISPDPN+ I EV +P  +AR LT PER++
Sbjct: 295 LRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIARTLTVPERIT 354

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
             NIEKLRQ + NGPDK+PGA  +  PDG    L Y K R +LA  L  G +V+RHL DG
Sbjct: 355 PWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYVVERHLTDG 414

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           DVVLFNRQPSLHR+S+M HR R++   T R N  VC PYNADFDGDEMN+HVPQ+EEA  
Sbjct: 415 DVVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIA 474

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           EA  +M V  N+ TP+ G  ++ + QD+++ ++L+T K T   +     +   +G    +
Sbjct: 475 EAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQI---LGVADVK 531

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           +DL  PAIL P E +TGKQ+ S  +    N     N++   +   N+             
Sbjct: 532 IDLGEPAILAPREYYTGKQVVSAFLPKDFNFHGQANVSSGPRLCKNE------------- 578

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             CP+D +V  +N  L+ G   K  +GN   + +   L+++Y        M+ L ++  R
Sbjct: 579 -DCPHDSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIR 637

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVK----IKEYNEGKLQLKPGCDAA 616
           ++   GF++ ++DV     L D   K I    +   V+    I++Y  G+L+  PG    
Sbjct: 638 FVELQGFTMRLEDVS----LGDDVKKEIYNEIDRAKVEVDNLIQKYKNGELEPIPGRTLE 693

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           ++LE  I D L+++R  AG      L   N   +M++ G++GS +NI+QM A +GQQSV 
Sbjct: 694 ESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLGQQSVR 753

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G R   G++ R+LPHF      P A+GF+ +SF +GL  TE FFH  GGREGLVDTAV+T
Sbjct: 754 GERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRT 813

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           + +GYM RRLI AL DL  +YD +VR+  G ++Q  YGDDG+ P  M    G+ ++ +R+
Sbjct: 814 SQSGYMQRRLINALSDLRAEYDGTVRSLYGEVIQVAYGDDGVFP--MYSAHGKTVDVNRI 871

Query: 797 LMKV 800
             +V
Sbjct: 872 FERV 875


>gi|336041419|gb|AEH95287.1| RNA polymerase II largest subunit [Malawimonas jakobiformis]
          Length = 1042

 Score =  533 bits (1374), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 296/707 (41%), Positives = 422/707 (59%), Gaps = 29/707 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  V  +   ++D DC  L  +    RP+ ++I+ + VPP A+RP + MD + + ++
Sbjct: 136 VLTPEKVHNILSHISDDDCRALGFNPALARPDWMVISVLPVPPPAVRPPIAMDSTTAAQD 195

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ--VA 199
           D+T +L  I++TN  L++++            W  LQ  VA  I +D+ G P  +Q    
Sbjct: 196 DLTFKLGDIVRTNVELKRKIKAGAPQHIIDEFWLMLQYHVANIIETDISGFPKPVQKGSG 255

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           R L     RLKGK GR RGNL GKRV+++ R+VI+ DPNL + EV +P  +A  LTYPE 
Sbjct: 256 RVLKSIRSRLKGKHGRIRGNLMGKRVDFSARSVITADPNLSVNEVGVPRTIALNLTYPET 315

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+  NI+++RQ ++NGP K+PGA  +   DG    L         V L  G  V+RH+ D
Sbjct: 316 VTPFNIQRMRQLVENGPHKHPGANYVIREDGERLDLRRIRDRS-TVPLSYGWKVERHIHD 374

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GDVV+FNRQP+LH+MS+M HR R++P+ T R N SV  PYNADFDGDEMN+HVPQ+ E R
Sbjct: 375 GDVVVFNRQPTLHKMSMMGHRVRVLPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSHETR 434

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF--SLMCCYMGDG 437
            E   LM V  N+ +P+  + ++   QD L  + L T++DTF +R     +LM     DG
Sbjct: 435 AELEELMMVPRNIVSPQANKPVMGIVQDSLLGTKLFTKRDTFLERDLVNNTLMWLPSWDG 494

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
                +P PAILKP +LWTGKQ+FS+++ P   +R  +    KE         T  D ++
Sbjct: 495 ----HVPKPAILKPKQLWTGKQVFSLIVPPVNVLRKSIGAPDKEDNDDF----TASDTKV 546

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
           RIE              E++SG + K T+GN +   L  ++  + G  AT   ++ +  +
Sbjct: 547 RIE------------QGEVLSGIVCKNTVGNAS-GSLVHIIWNELGHEATRNFLDSVQTV 593

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
              W+ N GFSIGI D            K+I  + +  +  I + +EGKL+  PG    +
Sbjct: 594 INYWLMNRGFSIGIGDTIADPATMQNITKIIGRSKQEVSDLITQLHEGKLEATPGRTLME 653

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +   LN+ R++AGKA +GSL   N+   M   GSKGS INI+QM+ACVGQQ+V G
Sbjct: 654 TFEMKVNTALNKARDEAGKAAVGSLRATNAAKEMVTAGSKGSNINIAQMIACVGQQNVEG 713

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF +R+LPHF      P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT+
Sbjct: 714 KRIPYGFRNRTLPHFVTNDMTPESRGFVENSYLRGLNPQEFFFHAMGGREGLIDTAVKTS 773

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           +TGY+ RRL+KA+ED+ ++YD +VRN+ G +VQFLYG+DG D   +E
Sbjct: 774 ETGYIQRRLMKAMEDVMVKYDGTVRNSVGEVVQFLYGEDGFDGTAIE 820


>gi|329132887|gb|AEB78334.1| RNA polymerase II largest subunit [Percolomonas cosmopolitus]
          Length = 1028

 Score =  533 bits (1373), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 290/725 (40%), Positives = 432/725 (59%), Gaps = 32/725 (4%)

Query: 111 RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
           RP  +I++ + V P  +RPS+    + + ++D+T +L  I++TN  L+++     + F  
Sbjct: 149 RPHWMILSKLPVVPPCVRPSIEHGTAGAGQDDLTYKLSDIVKTNNRLREKEKNGETDFNI 208

Query: 171 LAGWETLQVEVAQYI-NSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
               + L + VAQ + N++ +      +  R L     RLKGK+GR R NL GKRV+++ 
Sbjct: 209 SETRDLLMLYVAQMMDNTNPKLTQAIQKSGRVLKCISSRLKGKEGRLRNNLMGKRVDFSA 268

Query: 230 RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
           RTVI+PDPNL+I +V +PI +A  +T+PERV+ +N+E+L++ ++NG + YPGA+ I + D
Sbjct: 269 RTVITPDPNLEIDQVGVPISIASNMTFPERVTLYNMERLKEKVENGSE-YPGAKFIIHKD 327

Query: 290 GTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 349
           GT+  +  +  +    +L+ G IV+RH+ED D++LFNRQP+LH+MS+M HR +++P+ T 
Sbjct: 328 GTSVDV--ELASDEYKQLQPGYIVERHVEDDDLILFNRQPTLHKMSMMGHRVKVLPYSTF 385

Query: 350 RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFL 409
           R N SV +PYNADFDGDEMN+H+PQ+  A+ E   +M V  N+ + +    ++A  QD L
Sbjct: 386 RLNVSVTSPYNADFDGDEMNLHLPQSLGAKAELQEMMMVSKNIVSTQGNAPVIAIVQDAL 445

Query: 410 TSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHA 469
             S L+T++D F ++      C  + +  +  +LP P ILKP +LW+GKQLFS++++   
Sbjct: 446 LGSVLMTKRDVFLEKDIMMNCCMRLKENFNG-ELPQPCILKPKQLWSGKQLFSLVLKG-- 502

Query: 470 NMRVYVNLTVKEKTYSN--KLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLG 527
                VNL  +   Y +  K++  E DE+I     CP D  V     ELISG   K TLG
Sbjct: 503 ---CEVNLFREANQYDDVKKIMGKEFDEDI-----CPMDTKVVISRGELISGVADKRTLG 554

Query: 528 NGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKL 587
            G    L   +  +Y     S  +N L  +   W+  HG+SIG++D    +  +D+  + 
Sbjct: 555 KGG-GSLIHTIFNEYSFIEASNFLNTLQWVVNYWMLQHGYSIGVEDTIADENTADQVQQT 613

Query: 588 ISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNS 647
           +S+ +E  +  IKE  EGKL+ KPG    ++ EA +   LN     AGK    SL  RN 
Sbjct: 614 LSKAHEEVSKYIKEAQEGKLKSKPGMSLQESFEAAVNKTLNDSMSSAGKNSASSLSKRNR 673

Query: 648 PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVAN 707
              M   GSKGS  NISQ++ACVGQQ++ G+R   GF  R+LPHF +    P ++GFV N
Sbjct: 674 IKTMVVGGSKGSNTNISQIIACVGQQNIEGKRITFGFRKRTLPHFEQNDHRPISRGFVQN 733

Query: 708 SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
           S+  GL   EFFFHTMGGREGL+DTAVKTA TGY+ RRLIK++ED  ++YD +VR++ G 
Sbjct: 734 SYLRGLLPQEFFFHTMGGREGLIDTAVKTAKTGYIQRRLIKSMEDFQVKYDGTVRDSAGN 793

Query: 768 IVQFLYGDDGMDPANMEG-----------KSGEPLNFDRLLMKVKATCPPAGQRYLSPQQ 816
           I+QFLYG+DGMD   +E            K  E   ++    K  +  P  G +YLS + 
Sbjct: 794 ILQFLYGEDGMDGVKLESQYFGMYKMSDKKFSETYQYE---TKNGSLSPEFGSKYLSQKI 850

Query: 817 VSEIV 821
             E V
Sbjct: 851 HEEFV 855



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 34/48 (70%), Gaps = 3/48 (6%)

Query: 890  IQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN 937
            I+T F R     V+ G  +GA+ AQSIGEP TQMTL TFHFAGV++ N
Sbjct: 984  IETTFKR---AFVQPGEMVGALAAQSIGEPATQMTLNTFHFAGVSAKN 1028


>gi|120561215|gb|ABM26993.1| RNA polymerase II largest subunit, partial [Furculomyces
           boomerangus]
          Length = 1024

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 294/708 (41%), Positives = 423/708 (59%), Gaps = 30/708 (4%)

Query: 91  VLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL + K+++D D   + L+    RPE LII+ + VPP+A+RPS+ MD ++ +E+D+T +L
Sbjct: 146 VLQVLKKISDEDALAMGLNVQFARPEWLIISVMPVPPLAVRPSIQMDATRQSEDDLTYKL 205

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+ N  +Q   VE           + LQ  VA ++N+++ G+P ++Q + RP+    
Sbjct: 206 NDIIKANVRVQSCEVEGAPLHIIEEFEKLLQFHVATFMNNEISGLPQALQKSGRPIKSIR 265

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ DPN+ I +V +P  +AR +TYPE V+ +NIE
Sbjct: 266 ARLKGKEGRLRGNLMGKRVDFSARTVITGDPNIDIDQVGVPRSIARNMTYPEVVTPYNIE 325

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL++ +QNGP+++PGA+ +   D   R+     +    + L+ G  V+RH+ D DVV+FN
Sbjct: 326 KLQEMVQNGPNEHPGAKYV-IRDSGERIDLRYSKRGGDIPLRIGYRVERHMLDDDVVIFN 384

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+H+PQ+EE R E   + 
Sbjct: 385 RQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHLPQSEETRAEVTEIC 444

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYMGDGMDRVDLP 444
            V   + +P++   ++   QD L +  + T++DT   YD     LM     DG+    +P
Sbjct: 445 MVPKQIVSPQSNMPVMGIVQDTLCAINIFTKRDTLLQYDFVMNLLMTIPDWDGI----VP 500

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMC- 503
           TP ILKP  LW+GKQ++S++I    N   Y N T  +  Y                T C 
Sbjct: 501 TPCILKPQPLWSGKQIYSMVIPKGVNCHRY-NSTHPDNEY----------------TWCS 543

Query: 504 PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIG 563
           P D  +   N EL+SG L K T+G  +  GL  V+  + G            KL   W  
Sbjct: 544 PGDTRIIIENGELLSGALCKRTVGAVDS-GLIHVIRNELGPDYAKKFFGGTQKLVNYWFL 602

Query: 564 NHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
             GFS+GI D           G +I E Y   +  I++  E +L+  PG    +T E+ +
Sbjct: 603 QTGFSVGIGDTIADDSTMQTVGDIIRECYMRVDELIRDAQEDRLERLPGMTLKETFESKV 662

Query: 624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
              LNR R+ AGK     L   N+   M   GSKGS IN+SQM A VGQQ+V G+R P G
Sbjct: 663 NGELNRARDQAGKTVQNRLKECNNVRRMVVSGSKGSYINVSQMTASVGQQNVEGKRIPFG 722

Query: 684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
           F +R+LPHF +    P ++GFV NS+  GL+  EF+FH MGGREGL+DTAVKTA+TGY+ 
Sbjct: 723 FKNRTLPHFSKDDYSPQSRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQ 782

Query: 744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL 791
           RRL+KALED+ + YD +VRN+ G I+ F+YG+DGMD   +E ++ + L
Sbjct: 783 RRLVKALEDIMVHYDGTVRNSLGSIIDFVYGEDGMDACFLETQNLQTL 830


>gi|374327623|ref|YP_005085823.1| DNA-directed RNA polymerase subunit alpha [Pyrobaculum sp. 1860]
 gi|356642892|gb|AET33571.1| DNA-directed RNA polymerase subunit alpha [Pyrobaculum sp. 1860]
          Length = 884

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 287/771 (37%), Positives = 437/771 (56%), Gaps = 48/771 (6%)

Query: 14  LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTK 73
           L +++ +K    A++ V CP CGY    ++                     F       +
Sbjct: 137 LAQNLHEKIRKKAAERVTCPHCGYKKNKIR---------------------FERPYYFYE 175

Query: 74  ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPS 130
           E++    V    L+P  +     ++   D E+L ++    RPE  ++  + VPP  +RPS
Sbjct: 176 ETEDGALVK---LDPEILRERLAKVPGEDLELLGINSSVARPEWAVLKVLPVPPPHVRPS 232

Query: 131 VIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVR 190
           + ++    +E+D+T +L  II+ N  L+  +            W+ LQ  VA Y ++++ 
Sbjct: 233 IQLETGIRSEDDLTHKLVDIIRMNEKLKIAIETGAPTNVVDNLWDLLQYHVATYFDNELP 292

Query: 191 GVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIR 249
           G+P +  +  RPL G  QRLKGK+GRFRG+LSGKRV Y+ RTVISPDP++ I EV +P  
Sbjct: 293 GIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNYSARTVISPDPHIGINEVGVPYD 352

Query: 250 MARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELK 308
           +A++LT PERV+  N++ LR+ +  GP+ +PGA  +  P+G    L Y K +  LA  L 
Sbjct: 353 IAKVLTVPERVTAWNVDVLREYVIRGPETWPGANYVITPEGRRIDLRYVKDKKTLAERLS 412

Query: 309 SGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEM 368
            G IV+RHL DGD+VLFNRQPSLHR+SIM H  +++P RT R + +VC PYNADFDGDEM
Sbjct: 413 PGWIVERHLIDGDIVLFNRQPSLHRVSIMGHLVKVLPGRTFRLHLAVCPPYNADFDGDEM 472

Query: 369 NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 428
           N+HVPQTEEAR EA  LM V+ ++ TP+ G  ++ + QD++  ++L++ K TF  +   +
Sbjct: 473 NLHVPQTEEARAEARTLMLVERHIITPRYGGAIIGARQDYIIGAYLLSLKTTFLTKKEVA 532

Query: 429 LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKL 488
            +   +G G    D P PAIL PVELWTGKQ+ S  +    N   +V  T  +    +  
Sbjct: 533 FL---LGAGKSGEDPPEPAILHPVELWTGKQIISHFLPRDLN---WVQPTAFKSRCQDAY 586

Query: 489 IRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
                         CP D ++   N  ++ G L K ++G    D L+  + RDY      
Sbjct: 587 -------------TCPTDEWIIIINGNMVKGVLDKKSIGAEQVDSLWHRIARDYPPEVAR 633

Query: 549 GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
             ++   +L  R++   GF+ G+D +    E  ++  K++ E+ +     I ++  G+L+
Sbjct: 634 RWLDSSLRLFLRYLDLRGFTFGMDSIYIPPEAYEEIDKIVEESLKKVESLIGDFRSGRLE 693

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
             PG    +T E  +T+IL+R+REDA      ++   +   +M++ G++GS +NI QMVA
Sbjct: 694 AMPGFTVEETFENKVTEILSRVREDAAVVVEKNIDKNSEGYLMAKTGARGSIVNIVQMVA 753

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            +GQQ++ G R   GF  R+LPHFP       + GFV + F  GL+  E+FFH   GR+G
Sbjct: 754 TLGQQTIRGERIRRGFRTRTLPHFPVGDIGAFSGGFVRSCFRCGLTPVEYFFHAAAGRDG 813

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           L+DTAV+TA +GYM RRLI AL+D+ + YD +VR  G  ++Q LYG+DG+D
Sbjct: 814 LIDTAVRTAQSGYMQRRLINALQDVYVAYDGTVRFGGAMLLQLLYGEDGVD 864


>gi|356496595|ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
           [Glycine max]
          Length = 1827

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 303/723 (41%), Positives = 430/723 (59%), Gaps = 30/723 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D DC++L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+D
Sbjct: 212 LSAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDD 271

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++    + A       + LQ  +A Y ++++ G+P + Q + RP
Sbjct: 272 LTHQLAMIIRHNENLKRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRP 331

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDP + I ++ +P  +A  LTYPE V+
Sbjct: 332 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT 391

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRY--PDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
            +NIE+L++ ++ GP   PG    +Y   D   R+     +      L+ G  V+RHL D
Sbjct: 392 PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 451

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R
Sbjct: 452 GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E L LM V   + +P++   ++   QD L     IT++DTF  +  F  +  +  D   
Sbjct: 512 AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFISKDVFMNILMWWEDFDG 571

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
           +V  P PAILKP  LWTGKQ+F+++I    N+  Y +      + S +   T GD  +RI
Sbjct: 572 KV--PAPAILKPEPLWTGKQVFNLIIPKQINLIRYSSW----HSESERGSITPGDTMVRI 625

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
           E              EL++G L K TLG  +  GL  V+  + G  A    +     L  
Sbjct: 626 E------------KGELLTGTLCKKTLGTYS-GGLIHVIWEEVGPDAARKFLGHTQWLVN 672

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
            W+  + FSIGI D        +   + IS   E     I+E +E KL+ +PG     + 
Sbjct: 673 YWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAHEKKLEAEPGRSMMDSF 732

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E  +   LNR R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R
Sbjct: 733 ENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 792

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++T
Sbjct: 793 IPYGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 852

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL-----NFD 794
           GY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L      FD
Sbjct: 853 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIEKQMLDSLKMKKTEFD 912

Query: 795 RLL 797
           R+ 
Sbjct: 913 RVF 915



 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/409 (31%), Positives = 208/409 (50%), Gaps = 53/409 (12%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  +    SR+    V +G  IG + AQSIGEP TQMTL TFH+AGV++ N+T 
Sbjct: 1056 LSREAFEWVVGEIESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1115

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR++EIIN AKRI TP ++  L  +    +  A+ V+  +E T L  V ++ ++    
Sbjct: 1116 GVPRLREIINVAKRIKTPSLSVYLRPDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDP 1175

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKS 1058
               S +I  D++ ++  +   + ++  E I  +P +   + + +++  +KL +    +K 
Sbjct: 1176 DPMSTIIEEDVDFVKSYYEMPDEEVALEKI--SPWLLRIELNREMMVDKKLSMADIAEKI 1233

Query: 1059 KIHFE-----------------------------------------LYSLK-NVLPMVIV 1076
             + F+                                         L  ++ N+L  + +
Sbjct: 1234 NLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTL 1293

Query: 1077 KGIKTVERVVI----AEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSN 1132
            +GI  + +V I     +K  E +  K N E   + L  EG  L AVM  E +D  +T SN
Sbjct: 1294 RGIPDINKVFIKNTKVQKFDENQGFKPNEE---WMLDTEGVNLLAVMCHEDVDVTRTTSN 1350

Query: 1133 HIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQ 1192
            H+ EV + LGIEA R  ++DE+   +   G  ++ RH+ +L D MT+RG ++ ITR GI 
Sbjct: 1351 HLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1410

Query: 1193 KMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            + D   +M  SFE+T D L +A+V    D + GV+E I++G   P+GTG
Sbjct: 1411 RNDTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTG 1459


>gi|83320442|gb|ABC02848.1| RNA polymerase II largest subunit, partial [Zancudomyces culisetae]
          Length = 983

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 294/709 (41%), Positives = 429/709 (60%), Gaps = 30/709 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L  + VL + K+++DTD   + ++    RPE LII+ + VPP+ +RPS+ MD ++ +E+
Sbjct: 122 VLTVLQVLQVLKKISDTDVRAIGMNPEYARPEWLIISVMPVPPMCVRPSIQMDATRHSED 181

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA- 199
           D+T +L  I++ NA ++   VE  +    +  +ETL Q  VA +IN+D+ G+P ++Q + 
Sbjct: 182 DLTYKLNDILKANARVRSCEVEG-APQHIIDEFETLLQFHVATFINNDISGIPQALQKSG 240

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL+I +V +P  +A+ LTYPE 
Sbjct: 241 RPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLEIDQVGVPKAIAKNLTYPEV 300

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI++L++ +QNGP ++PGA+ +   D   R+     +    + L+ G  V+R L D
Sbjct: 301 VTPYNIDRLQELVQNGPTEHPGAKYV-IRDSGERIDLKYSKRGGDIPLQIGYKVERSLMD 359

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
            DVV+FNRQPSLH+MS+M HR ++M + T R N SV +PYNADFDGDEMN+H+PQ+EE R
Sbjct: 360 NDVVIFNRQPSLHKMSMMGHRVKVMDYSTFRLNLSVTSPYNADFDGDEMNLHLPQSEETR 419

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DRAAFSLMCCYMGDG 437
            E   L  V   + +P+    ++   QD L +  + T++D     D     L+     DG
Sbjct: 420 AEVRELCMVPKQIVSPQGNRPIMGIVQDTLCAMIMFTKRDNLMKQDLVMDLLLKVPGWDG 479

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
           M    +P P ILKP  LW+GKQL+S+LI    N   ++    KE              ++
Sbjct: 480 M----IPPPCILKPQPLWSGKQLYSLLIPDGINCYTFL----KEHP------------DL 519

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
                 P D  V   N  L+SG + K T+G   + GL   +  + G  AT   +    ++
Sbjct: 520 ETSWSSPGDTRVVVENGVLLSGIVCKQTVG-AVRGGLVHTIFNELGPEATKVFLGGTQRV 578

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             +W+  +GFSIGI D        D   K+ISE + + +  IK+  E K++  PG    +
Sbjct: 579 INQWLVTNGFSIGIGDTITDASTMDSVSKIISEAHRIVDQIIKDCIEDKMKGLPGMTYKE 638

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  I   LN+ RE+AGK+    L   N+   M   GSKGS IN+SQM A VGQQ+V G
Sbjct: 639 TFENNINFELNKARENAGKSVQAQLKDCNNVRKMVVSGSKGSYINVSQMTAAVGQQNVEG 698

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF DR+LPHF +    P ++GFV NS+ SGL+  EF+FH MGGREGL+DTAVKTA
Sbjct: 699 KRIPFGFRDRTLPHFTKDDYTPHSRGFVENSYLSGLTPQEFYFHAMGGREGLIDTAVKTA 758

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           +TGY+ RRL+KALED+ + YD +VRN+ G I++F YG DG D + +E +
Sbjct: 759 ETGYIQRRLVKALEDVMVHYDGTVRNSLGAIIEFAYGHDGADASLLENQ 807


>gi|120561211|gb|ABM26991.1| RNA polymerase II largest subunit, partial [Zancudomyces culisetae]
          Length = 1025

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 294/709 (41%), Positives = 429/709 (60%), Gaps = 30/709 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L  + VL + K+++DTD   + ++    RPE LII+ + VPP+ +RPS+ MD ++ +E+
Sbjct: 141 VLTVLQVLQVLKKISDTDVRAIGMNPEYARPEWLIISVMPVPPMCVRPSIQMDATRHSED 200

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA- 199
           D+T +L  I++ NA ++   VE  +    +  +ETL Q  VA +IN+D+ G+P ++Q + 
Sbjct: 201 DLTYKLNDILKANARVRSCEVEG-APQHIIDEFETLLQFHVATFINNDISGIPQALQKSG 259

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL+I +V +P  +A+ LTYPE 
Sbjct: 260 RPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLEIDQVGVPKAIAKNLTYPEV 319

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI++L++ +QNGP ++PGA+ +   D   R+     +    + L+ G  V+R L D
Sbjct: 320 VTPYNIDRLQELVQNGPTEHPGAKYV-IRDSGERIDLKYSKRGGDIPLQIGYKVERSLMD 378

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
            DVV+FNRQPSLH+MS+M HR ++M + T R N SV +PYNADFDGDEMN+H+PQ+EE R
Sbjct: 379 NDVVIFNRQPSLHKMSMMGHRVKVMDYSTFRLNLSVTSPYNADFDGDEMNLHLPQSEETR 438

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DRAAFSLMCCYMGDG 437
            E   L  V   + +P+    ++   QD L +  + T++D     D     L+     DG
Sbjct: 439 AEVRELCMVPKQIVSPQGNRPIMGIVQDTLCAMIMFTKRDNLMKQDLVMDLLLKVPGWDG 498

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
           M    +P P ILKP  LW+GKQL+S+LI    N   ++    KE              ++
Sbjct: 499 M----IPPPCILKPQPLWSGKQLYSLLIPDGINCYTFL----KEHP------------DL 538

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
                 P D  V   N  L+SG + K T+G   + GL   +  + G  AT   +    ++
Sbjct: 539 ETSWSSPGDTRVVVENGVLLSGIVCKQTVG-AVRGGLVHTIFNELGPEATKVFLGGTQRV 597

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             +W+  +GFSIGI D        D   K+ISE + + +  IK+  E K++  PG    +
Sbjct: 598 INQWLVTNGFSIGIGDTITDASTMDSVSKIISEAHRIVDQIIKDCIEDKMKGLPGMTYKE 657

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  I   LN+ RE+AGK+    L   N+   M   GSKGS IN+SQM A VGQQ+V G
Sbjct: 658 TFENNINFELNKARENAGKSVQAQLKDCNNVRKMVVSGSKGSYINVSQMTAAVGQQNVEG 717

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF DR+LPHF +    P ++GFV NS+ SGL+  EF+FH MGGREGL+DTAVKTA
Sbjct: 718 KRIPFGFRDRTLPHFTKDDYTPHSRGFVENSYLSGLTPQEFYFHAMGGREGLIDTAVKTA 777

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           +TGY+ RRL+KALED+ + YD +VRN+ G I++F YG DG D + +E +
Sbjct: 778 ETGYIQRRLVKALEDVMVHYDGTVRNSLGAIIEFAYGHDGADASLLENQ 826


>gi|284998388|ref|YP_003420156.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
           L.D.8.5]
 gi|284446284|gb|ADB87786.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
           L.D.8.5]
          Length = 880

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 303/790 (38%), Positives = 446/790 (56%), Gaps = 49/790 (6%)

Query: 16  KSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKES 75
           K + +     A KA  CP CG     +K                  L++  +     KE 
Sbjct: 130 KRLTEYVKKTAMKAQVCPHCGEKQFKIK------------------LEKPYNFYEERKEG 171

Query: 76  KAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVI 132
            A        L P ++    +++ ++D E+L     + RPE +I+T + VPPI IRPS++
Sbjct: 172 VAK-------LTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIM 224

Query: 133 MDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGV 192
           ++     E+D+T +L  I++ N  L++ +            W+ LQ  VA Y ++++ G+
Sbjct: 225 IESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGL 284

Query: 193 PFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMA 251
           P S  +  RPL    QRLKGK+GRFRGNLSGKRV+++ RTVISPDPN+ I EV +P  +A
Sbjct: 285 PPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIA 344

Query: 252 RILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSG 310
           R LT PER++  NIEKLRQ + NGPDK+PGA  +  PDG    L Y K R +LA  L  G
Sbjct: 345 RTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPG 404

Query: 311 CIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNM 370
            +V+RHL DGDVVLFNRQPSLHR+S+M HR R++   T R N  VC PYNADFDGDEMN+
Sbjct: 405 YVVERHLTDGDVVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNL 464

Query: 371 HVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLM 430
           HVPQ+EEA  EA  +M V  N+ TP+ G  ++ + QD+++ ++L+T K T   +     +
Sbjct: 465 HVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQI 524

Query: 431 CCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIR 490
              +G    ++DL  PAIL P E +TGKQ+ S  +    N     N++   +   N+   
Sbjct: 525 ---LGVADVKIDLGEPAILAPREYYTGKQIVSAFLPKDFNFHGQANVSSGPRLCKNE--- 578

Query: 491 TEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGC 550
                       CP+D +V  +N  L+ G   K  +GN   + +   L+++Y        
Sbjct: 579 -----------DCPHDSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWL 627

Query: 551 MNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLK 610
           M+ L ++  R++   GF++ ++DV    ++  +    I       N  I++Y  G+L+  
Sbjct: 628 MDNLFRVFIRFVELQGFTMRLEDVSLGDDVKKEIYNEIDRAKVEVNNLIQKYKNGELEPI 687

Query: 611 PGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACV 670
           PG    ++LE  I D L+++R  AG      L   N   +M++ G++GS +NI+QM A +
Sbjct: 688 PGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNITQMAAML 747

Query: 671 GQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLV 730
           GQQSV G R   G++ R+LPHF      P A+GF+ +SF +GL  TE FFH  GGREGLV
Sbjct: 748 GQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGLV 807

Query: 731 DTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEP 790
           DTAV+T+ +GYM RRLI AL DL  +YD +VR+    ++Q  YGDDG+ P  M    G+ 
Sbjct: 808 DTAVRTSQSGYMQRRLINALSDLRAEYDGTVRSLYSEVIQVAYGDDGVFP--MYSAHGKT 865

Query: 791 LNFDRLLMKV 800
           ++ +R+  +V
Sbjct: 866 VDVNRIFERV 875


>gi|18312086|ref|NP_558753.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum aerophilum str.
           IM2]
 gi|18159516|gb|AAL62935.1| DNA-directed RNA polymerase subunit A' (rpoA1) [Pyrobaculum
           aerophilum str. IM2]
          Length = 884

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 293/771 (38%), Positives = 436/771 (56%), Gaps = 48/771 (6%)

Query: 14  LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTK 73
           L  ++ +K    A++ + CP CGY                 R+KV      F       +
Sbjct: 137 LALNLHEKIRKKATERMTCPHCGY----------------KRNKV-----RFERPYYFYE 175

Query: 74  ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPS 130
           E+K+   V    L+P  +     ++   D E+L ++    RPE  I+  + VPP  +RPS
Sbjct: 176 ETKSGALVK---LDPEVLRERLSKVPSEDLELLGINPSVARPEWAILKVLPVPPPHVRPS 232

Query: 131 VIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVR 190
           + ++    +E+D+T +L  II+ N  L+  +            WE LQ  VA Y ++++ 
Sbjct: 233 IQLETGIRSEDDLTHKLVDIIRMNEKLKIAIETGAPTNVVDNLWELLQYHVATYFDNELP 292

Query: 191 GVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIR 249
           G+P +     RPL G  QRLKGK+GRFRG+LSGKRV ++ RTVISPDP++ I EV +P  
Sbjct: 293 GIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPHISINEVGVPYD 352

Query: 250 MARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELK 308
           +A++LT PERV+  N++ LR+ +  GP+ +PGA  +  P+G    L Y K R  LA  L 
Sbjct: 353 IAKVLTVPERVTAWNVDVLREYVIRGPESWPGANYVVTPEGRRIDLRYVKDRKALAERLA 412

Query: 309 SGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEM 368
            G IV+RHL DGD+VLFNRQPSLHR+S+M H  +++P RT R + +VC PYNADFDGDEM
Sbjct: 413 PGWIVERHLIDGDIVLFNRQPSLHRVSMMGHLVKVLPGRTFRLHLAVCPPYNADFDGDEM 472

Query: 369 NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 428
           N+HVPQTEEAR EA  LM V+ ++ TP+ G  ++ + QD++  ++L++ K TF  +   +
Sbjct: 473 NLHVPQTEEARAEARALMLVEKHIITPRYGGAIIGARQDYIIGAYLLSHKSTFLTKKEVA 532

Query: 429 LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKL 488
            +   +G G  + D P PAIL PVELWTGKQ+ S  +    N   +V  T  +    N  
Sbjct: 533 FL---LGAGKSQEDPPEPAILHPVELWTGKQIISHFLPKDLN---WVQPTAFKSKCQNAY 586

Query: 489 IRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
                         CP D ++   N  L+ G L K ++G    D L+  + RDY      
Sbjct: 587 -------------TCPTDEWIIVINGNLVKGVLDKKSIGAEQVDSLWHRIARDYSPEVAR 633

Query: 549 GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
             ++   +L  R++   GF+ G+D +    E   +   +I  + E  +  I ++  G L+
Sbjct: 634 RWLDSSLRLFLRFLDLRGFTFGMDSIYIPPEAYREIDNIIKASLEKVDKLIDDFRSGHLE 693

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
             PG    +T E  +T+IL+++REDA       +   +   +M++ G++GS +NI QMVA
Sbjct: 694 AMPGFTVEETFENKVTEILSKVREDAAVVVEKYIDKNSEGYLMAKTGARGSIVNIVQMVA 753

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            +GQQ++ G R   GF  R+LPHFP       + GFV N F  GL+  E+FFH   GR+G
Sbjct: 754 TLGQQTIRGERIRRGFRTRTLPHFPVGDIGAFSGGFVRNCFRCGLTPVEYFFHAAAGRDG 813

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           L+DTAV+TA +GYM RRLI AL+D+ + YD +VR  G  ++Q+LYG+DG+D
Sbjct: 814 LIDTAVRTAQSGYMQRRLINALQDVYVAYDGTVRFGGAMLLQYLYGEDGVD 864


>gi|302794771|ref|XP_002979149.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
 gi|300152917|gb|EFJ19557.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
          Length = 1764

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 308/721 (42%), Positives = 430/721 (59%), Gaps = 38/721 (5%)

Query: 91  VLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL + KR++D +C +L L     RP+ +I+  + +PP  +RPSV+MD S  +E+D+T +L
Sbjct: 236 VLGILKRISDEECRILGLDPQFARPDWMILQVLPIPPPPVRPSVMMDSSARSEDDLTHQL 295

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQ-VARPLSG 204
             II+ N +L+++  E N A   +    T  LQ  +A Y ++D+ G P + Q   RP+  
Sbjct: 296 AMIIRHNNNLKRQ--EQNGAPTHIINEFTQLLQFHIATYFDNDLPGQPRATQRSGRPIKS 353

Query: 205 FVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHN 264
             QRLK K+GR RGNL GKRV+++ RTVI+PDPN+ I E+ +P  +A  LTYPE V+ +N
Sbjct: 354 ICQRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYN 413

Query: 265 IEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
           +E+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RHL DG
Sbjct: 414 LERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDRHLEL--GYKVERHLCDG 471

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D VLFNRQPSLH+MSIM HR RIMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R 
Sbjct: 472 DFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRA 531

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           E   LM V   + +P++   ++   QD L     +T++DTF ++  F  +  +  D   +
Sbjct: 532 EVSELMIVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGK 591

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           V  PTPAI+KP  +WTGKQ+FS++I    NM       V+   + N      GD      
Sbjct: 592 V--PTPAIVKPRPIWTGKQIFSLIIPKQINM-------VRTAAWHND--SETGDN----- 635

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
              P D  V     EL++G L K TLG  +   L  V+  + G  A    +     L   
Sbjct: 636 --SPGDTMVRIEKGELLTGTLCKKTLGTSS-GSLIHVIWEEVGPDAARKFLGHTQWLVNY 692

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           W+  HGFSIGI D        +K  + I +        IK   E +L+ +PG    ++ E
Sbjct: 693 WLLQHGFSIGIGDTIADSATMEKINETIFKAKNEVKDLIKMAQEKQLESQPGRTMMESFE 752

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
             +  +LNR R++AG +   SL   N+   M   GSKGS INISQM+ACVGQQ+V G+R 
Sbjct: 753 NRVNQVLNRARDEAGSSAQKSLSESNNVKAMVTAGSKGSFINISQMIACVGQQNVEGKRI 812

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
           P GFIDR+LPHF +    P ++GFV NS+  GL+  EF+FH MGGREGL+DTAVKT++TG
Sbjct: 813 PFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTSETG 872

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           Y+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +       D + MK 
Sbjct: 873 YIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ-----RLDSIKMKK 927

Query: 801 K 801
           K
Sbjct: 928 K 928



 Score =  197 bits (501), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 126/405 (31%), Positives = 211/405 (52%), Gaps = 46/405 (11%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T++  E  I    +R+    V  G  IG + AQSIGEP TQMTL TFH+AGV++ N+T 
Sbjct: 1075 LTKEAFEWVIGEIETRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1134

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR++EIIN AK+I TP +   L  E +  +  A+ V+  +E T L  V ++ +I    
Sbjct: 1135 GVPRLREIINVAKKIKTPSLYVHLKPEVSKEKERAKNVQCALEYTTLRSVTQATEIWYDP 1194

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKS 1058
               S +I  D+E ++  +   + D+  + I  +P +   + + +++  +KL +    +K 
Sbjct: 1195 DPMSTIIEEDVEFVKSYYEMPDEDVTPDKI--SPWLLRIELNREMMVDKKLSMADIAEKI 1252

Query: 1059 KIHF--------------------------------------ELYSLK---NVLPMVIVK 1077
             + F                                      +++  K   N+L  + ++
Sbjct: 1253 NLEFVDDLTCIFNDDNAEKLILRVRIMNDDVSKGGEVDQSDDDVFLKKIESNMLTEMALR 1312

Query: 1078 GIKTVERVVIAEKEKEKRKVKENGE-KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFE 1136
            GI  + +V I E ++++    E  + + ++ L  EG  + AVM  E +D  +T SNH+ E
Sbjct: 1313 GIPDIHKVFIREHKRQRFDEHEGFKAETEWMLDTEGVNMLAVMCNEDVDATRTVSNHLIE 1372

Query: 1137 VQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDK 1196
            V + LGIEA R  ++ E+ E +   G  ++ RH+ +L D+MT+RG ++ ITR GI + D 
Sbjct: 1373 VIEVLGIEAVRQALLKELREVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDT 1432

Query: 1197 SVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
              +M  SFE+T D L +A+V    D + GV+E I++G   P+GTG
Sbjct: 1433 GPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTG 1477


>gi|397135918|gb|AFO11454.1| RNA polymerase I, partial [Citeromyces matritensis]
          Length = 860

 Score =  531 bits (1368), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 311/793 (39%), Positives = 459/793 (57%), Gaps = 65/793 (8%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           ++ P  +L +FK ++  DC  L  +E   RPE L++T I VPP  +RPS+ M  +  +E+
Sbjct: 12  VITPSEILNVFKLISPKDCFRLGFNEDFSRPEWLLVTVIPVPPPQVRPSIAMSETMRSED 71

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA- 199
           D+T +L  I++ N ++Q+ L    S    ++ +ETL Q  VA Y+++++ G P ++Q + 
Sbjct: 72  DLTYKLGDILKANINVQK-LEMDGSPQHVISEFETLLQFHVATYMDNEIAGQPQALQKSG 130

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +P  +AR L+ PE 
Sbjct: 131 RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIARTLSXPEV 190

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI KL + ++NGP+++PGA+ +   D   R+     +    ++L+ G  V+RHL D
Sbjct: 191 VTPYNIHKLTELVRNGPNEHPGAKYV-IRDTGDRIDLRYHKRAGDIDLQYGWRVERHLMD 249

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
            D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R
Sbjct: 250 DDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 309

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYMGDG 437
            E   L  V + + +P++ + ++   QD L     +T +D+F  YD+    L      DG
Sbjct: 310 AELSQLCSVPSQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIDYDQVMSMLFWIPQWDG 369

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
           +    +P PAILKP  LW+GKQLFS+ I    ++     L +   TY             
Sbjct: 370 V----IPQPAILKPKPLWSGKQLFSMAIPRGIHL-----LRLDGATY------------- 407

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
               + PND  +  RN E++ G + K T+G+    GL   ++R+ G+   S     + K+
Sbjct: 408 ----LSPNDTGMMIRNGEVMFGVVDKKTVGSAGG-GLVHTVMREKGSAICSDLFGNIQKV 462

Query: 558 SARWIGNHGFSIGIDDV----QPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
              W+ ++GFSIGI D        +E++D   +   E  E+    I +    +L+ +PG 
Sbjct: 463 VNFWLLHNGFSIGIGDTIADGSTMREITDTITRAKEEVQEI----ILDAQSNQLEAEPGM 518

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              +T E+ ++  LN+ R+ AG++   SL   N+   M   GSKGS INISQM ACVGQQ
Sbjct: 519 TLRETXESKVSRTLNQARDSAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQ 578

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
            V G+R P GF DRSLPHF +    P +KGFV NS+  GL+  EFFFH M GREGL DTA
Sbjct: 579 IVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLXDTA 638

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK-----SG 788
           VKTA TGY+ RRL+KALED+ + YD + RN+ G IVQF+YG+DG+D   +E +      G
Sbjct: 639 VKTASTGYIQRRLVKALEDIMVHYDGTTRNSLGDIVQFIYGEDGLDGTQVEKQPVDTIPG 698

Query: 789 EPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQ 848
              +F +   KV    P  G R+            +   YG E   +     L+K+ + +
Sbjct: 699 SDADFMKRY-KVDLMTPGGGXRH------------EAVDYGTEILGDV---ELQKYLDQE 742

Query: 849 QDKLDKKIKFVED 861
            D+L +  KF+ +
Sbjct: 743 YDQLVEDRKFLRN 755


>gi|188532157|gb|ACD63090.1| RNA polymerase II largest subunit [Pisum sativum]
          Length = 1010

 Score =  531 bits (1367), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 301/724 (41%), Positives = 429/724 (59%), Gaps = 36/724 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D DC++L L+    RP+ LI+  + +PP  +RPSV+MD S  +E+D
Sbjct: 131 LSAERVLSVLKRISDEDCQLLGLNPKYARPDWLILQVLPIPPPPVRPSVMMDTSSRSEDD 190

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++    + A       + LQ  +A Y ++++ G+P + Q + RP
Sbjct: 191 LTHQLAMIIRHNENLKRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRP 250

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDP + I ++ +P  +A  LTYPE V+
Sbjct: 251 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWTIALNLTYPETVT 310

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRY--PDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
            +NIE+L++ ++ GP   PG    +Y   D   R+     +      L+ G  V+RHL D
Sbjct: 311 PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 370

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R
Sbjct: 371 GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 430

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E L LM V   + +P+    ++   QD L     IT++DTF  +  F  +  +  D   
Sbjct: 431 AEVLELMMVPKCIVSPQANRPVMGIVQDSLLGCRKITKRDTFIAKDVFMNILMWWEDFDG 490

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIR---TEGDEE 496
           +V  P P ILKP  LWTGKQ+F+++I    N+       ++  ++ N+  R   T GD  
Sbjct: 491 KV--PAPTILKPEPLWTGKQVFNLIIPKQINL-------IRYSSWHNEAERGPITPGDTM 541

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
           +RIE              EL++G L K TLG G    L  V+  + G  A    +     
Sbjct: 542 VRIE------------KGELLTGTLCKKTLGTGT-GSLIHVVWEEVGPDAARKFLGHTQW 588

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           L   W+  + FSIGI D        +   + IS+  +     I+E  E KL+ +PG    
Sbjct: 589 LVNYWLLQNAFSIGIGDTIADASTMETINQTISQAKDKVKQLIREAQEKKLEAEPGRTMM 648

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
            + E  +   LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V 
Sbjct: 649 DSFENRVNQTLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 708

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT
Sbjct: 709 GKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 768

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL----- 791
           ++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L     
Sbjct: 769 SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKT 828

Query: 792 NFDR 795
           +FDR
Sbjct: 829 DFDR 832


>gi|356538329|ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
           [Glycine max]
          Length = 1827

 Score =  531 bits (1367), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 302/723 (41%), Positives = 427/723 (59%), Gaps = 30/723 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D DC++L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+D
Sbjct: 212 LSAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDD 271

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++    + A       + LQ  +A Y ++++ G+P + Q + RP
Sbjct: 272 LTHQLAMIIRHNENLKRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRP 331

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDP + I ++ +P  +A  LTYPE V+
Sbjct: 332 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT 391

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRY--PDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
            +NIE+L++ ++ GP   PG    +Y   D   R+     +      L+ G  V+RHL D
Sbjct: 392 PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 451

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R
Sbjct: 452 GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E L LM V   + +P++   ++   QD L     IT++DTF  +  F  +  +  D   
Sbjct: 512 AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDG 571

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
           +V  P PAILKP  LWTGKQ+F+++I    N+  Y +      + S +   T GD  +RI
Sbjct: 572 KV--PAPAILKPEPLWTGKQVFNLIIPKQINLIRYSSW----HSESERGSITPGDTMVRI 625

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
           E              EL++G L K TLG      L  V+  + G  A    +     L  
Sbjct: 626 E------------KGELLTGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVN 672

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
            W+  + FSIGI D        +   + IS   E     I+E  E KL+ +PG     + 
Sbjct: 673 YWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKLEAEPGRTMMDSF 732

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E  +   LNR R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R
Sbjct: 733 ENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 792

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++T
Sbjct: 793 IPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 852

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL-----NFD 794
           GY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L      FD
Sbjct: 853 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKTEFD 912

Query: 795 RLL 797
           R+ 
Sbjct: 913 RVF 915



 Score =  193 bits (490), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 127/409 (31%), Positives = 207/409 (50%), Gaps = 53/409 (12%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  +    SR+    V +G  IG + AQSIGEP TQMTL TFH+AGV++ N+T 
Sbjct: 1056 LSREAFEWVVGEIESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1115

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR++EIIN AKRI TP ++  L  +    +  A+ V+  +E T L  V ++ ++    
Sbjct: 1116 GVPRLREIINVAKRIKTPSLSVYLRSDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDP 1175

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKS 1058
               S +I  D + ++  +   + ++  E I  +P +   + + +++  +KL +    +K 
Sbjct: 1176 DPMSTIIEEDADFVKSYYEMPDEEVALEKI--SPWLLRIELNREMMVDKKLSMADIAEKI 1233

Query: 1059 KIHFE-----------------------------------------LYSLK-NVLPMVIV 1076
             + F+                                         L  ++ N+L  + +
Sbjct: 1234 NLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTL 1293

Query: 1077 KGIKTVERVVI----AEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSN 1132
            +GI  + +V I     +K  E +  K N E   + L  EG  L AVM  E +D  +T SN
Sbjct: 1294 RGIPDINKVFIKNTKVQKFDENQGFKPNEE---WMLDTEGVNLLAVMCHEDVDATRTTSN 1350

Query: 1133 HIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQ 1192
            H+ EV + LGIEA R  ++DE+   +   G  ++ RH+ +L D MT+RG ++ ITR GI 
Sbjct: 1351 HLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1410

Query: 1193 KMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            + D   +M  SFE+T D L +A+V    D + GV+E I++G   P+GTG
Sbjct: 1411 RNDTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTG 1459


>gi|357483939|ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago truncatula]
 gi|355513591|gb|AES95214.1| DNA-directed RNA polymerase [Medicago truncatula]
          Length = 1864

 Score =  531 bits (1367), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 302/724 (41%), Positives = 428/724 (59%), Gaps = 36/724 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D DC++L L+    RP+ LI+  + +PP  +RPSV+MD S  +E+D
Sbjct: 230 LSAERVLGVLKRISDEDCQLLGLNPKYARPDWLILQVLPIPPPPVRPSVMMDTSSRSEDD 289

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++    + A       + LQ  +A Y ++++ G+P + Q + RP
Sbjct: 290 LTHQLAMIIRHNENLKRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRP 349

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDP + I ++ +P  +A  LTYPE V+
Sbjct: 350 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT 409

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRY--PDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
            +NIE+L++ ++ GP   PG    +Y   D   R+     +      L+ G  V+RHL D
Sbjct: 410 PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 469

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R
Sbjct: 470 GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 529

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E L LM V   + +P+    ++   QD L     IT++DTF  +  F  +  +  D   
Sbjct: 530 AEVLELMMVPKCIVSPQANRPVMGIVQDSLLGCRKITKRDTFISKDVFMNILMWWEDFDG 589

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIR---TEGDEE 496
           +V  P P ILKP  LWTGKQ+F+++I    N+       ++  ++ N+  R   T GD  
Sbjct: 590 KV--PAPTILKPEPLWTGKQVFNLIIPKQINL-------IRYSSWHNENERGPITPGDTM 640

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
           +RIE              EL++G L K TLG G    L  V+  + G  A    +     
Sbjct: 641 VRIE------------KGELLTGTLCKKTLGTGT-GSLIHVIWEEVGPDAARKFLGHTQW 687

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           L   W+    FSIGI D        +   + IS+  +     I+E  E KL+ +PG    
Sbjct: 688 LVNYWLLQQAFSIGIGDTIADASTMETINQTISQAKDKVKQLIREAQEKKLEAEPGRTMM 747

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
            + E  +   LNR R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V 
Sbjct: 748 DSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 807

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT
Sbjct: 808 GKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 867

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL----- 791
           ++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L     
Sbjct: 868 SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKT 927

Query: 792 NFDR 795
           +FDR
Sbjct: 928 DFDR 931



 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/409 (30%), Positives = 208/409 (50%), Gaps = 53/409 (12%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  +    SR+    V +G  IG + AQSIGEP TQMTL TFH+AGV++ N+T 
Sbjct: 1074 LSREAFEWVVGEIESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1133

Query: 941  GVPRIKEIINGAKRISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            GVPR++EIIN AKRI TP ++  L+   C   E  A+ V+  +E T L  V ++ ++   
Sbjct: 1134 GVPRLREIINVAKRIKTPSLSVYLKPEVCKTKER-AKNVQCALEYTTLRSVTQATEVWYD 1192

Query: 998  SRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDK 1057
                  +I  D++ ++  +   + ++  + I  +P +   + + +++  +KL +    +K
Sbjct: 1193 PDPMGTIIEEDVDFVKSYYEMPDEEVALDKI--SPWLLRIELNREMMVDKKLSMADIAEK 1250

Query: 1058 SKIHFE-----LYSLKNVLPMVI------------------------------------- 1075
                F+     +++  N   +++                                     
Sbjct: 1251 INHEFDGDLTCIFNDDNAEKLILRIRIMNDEAPKGDIQDESAEDDVFLKKIESNMLTEMT 1310

Query: 1076 VKGIKTVERVVIAEKEKEKRKVKEN---GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSN 1132
            ++GI  + +V I  K  + +K  EN      +++ L  EG  L AVM  E +D  +T SN
Sbjct: 1311 LRGIPDINKVFI--KNTKIQKFDENEGFKPHEEWMLDTEGVNLLAVMCHEDVDAKRTTSN 1368

Query: 1133 HIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQ 1192
            H+ EV + LGIEA R  ++DE+   +   G  ++ RH+ +L D MT+RG ++ ITR GI 
Sbjct: 1369 HLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1428

Query: 1193 KMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            + +   +M  SFE+T D L +A+V    D + GV+E I++G   P+GTG
Sbjct: 1429 RNETGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTG 1477


>gi|188532147|gb|ACD63085.1| RNA polymerase II largest subunit [Illicium parviflorum]
          Length = 1013

 Score =  531 bits (1367), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 308/725 (42%), Positives = 427/725 (58%), Gaps = 36/725 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D DC +L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+D
Sbjct: 134 LSAERVLSILKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDD 193

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++      A       + LQ  +A Y ++++ G P + Q + RP
Sbjct: 194 LTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 253

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  LTYPE V+
Sbjct: 254 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVT 313

Query: 262 DHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHL 317
            +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RHL
Sbjct: 314 PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL--GYKVERHL 371

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E
Sbjct: 372 NDGDYVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 431

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
            R E L LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D 
Sbjct: 432 TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 491

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG-DEE 496
             ++  P PAILKP  LWTGKQ+F+++I    N                 LIRT     E
Sbjct: 492 DGKI--PAPAILKPRPLWTGKQVFNLIIPKQIN-----------------LIRTSAWHSE 532

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
                + P D  V     EL+SG L K TLG      L  V+  + G  A    +     
Sbjct: 533 SETGFITPGDTHVRIEKGELLSGTLCKKTLGTST-GSLIHVIWEEVGPDAARKFLGHTQW 591

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           L   W+  +GFSIGI D        +K  + IS+        IK   E +L+ +PG    
Sbjct: 592 LVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMM 651

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           ++ E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V 
Sbjct: 652 ESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 711

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT
Sbjct: 712 GKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 771

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           ++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +       D L
Sbjct: 772 SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ-----KLDSL 826

Query: 797 LMKVK 801
            MK K
Sbjct: 827 KMKKK 831


>gi|33326205|gb|AAQ08512.1| RNA polymerase II largest subunit [Cycas revoluta]
          Length = 1013

 Score =  530 bits (1366), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 303/718 (42%), Positives = 424/718 (59%), Gaps = 29/718 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D DC++L L+    RP+ +I+  + +PP  +RPSV+MD +  +E+D
Sbjct: 134 LSAEKVLDILKRISDEDCQMLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTTSRSEDD 193

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++      A       + LQ  +A Y ++D+ G P + Q + RP
Sbjct: 194 LTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNDLPGQPRATQRSGRP 253

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I E+ +P  +A  LTYPE V+
Sbjct: 254 IKSICNRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVT 313

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRY--PDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
            +NIE+L++ + NGP   PG    RY   D   R+     +      L+ G  V+RHL D
Sbjct: 314 PYNIERLKELVDNGPHPPPGKTGARYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLMD 373

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD VLFNRQPSLH+MSIM HR RIMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R
Sbjct: 374 GDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 433

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDG 437
            E L LM V   + +P++   ++   QD L     IT++DTF ++  F   LM     DG
Sbjct: 434 AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWENFDG 493

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
                +P+P ILKP  LWTGKQ+F+++I    N+  Y     + +T       T GD  +
Sbjct: 494 ----KIPSPTILKPRPLWTGKQVFNLIIPRQINLIRYSAWHSESETG----FITPGDTCV 545

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
           RIE              E++SG L K TLG  +   L  V+  + G  A    +     L
Sbjct: 546 RIE------------KGEVLSGTLCKKTLGTSS-GSLIHVIWEEVGPDAARKFLGHTQWL 592

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
              W+   GFSIGI D        +   + IS+     N  I+  ++  L+ +PG    +
Sbjct: 593 VNYWLLQQGFSIGIGDTIADAATMETINETISKAKAEVNQLIQLAHQKALEAEPGRTMME 652

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           + E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G
Sbjct: 653 SFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 712

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  RSLPHF R    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT+
Sbjct: 713 KRIPFGFFGRSLPHFTRDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 772

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR 795
           +TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L   R
Sbjct: 773 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKR 830


>gi|302813666|ref|XP_002988518.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
 gi|300143625|gb|EFJ10314.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
          Length = 1797

 Score =  530 bits (1365), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 308/721 (42%), Positives = 430/721 (59%), Gaps = 38/721 (5%)

Query: 91  VLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL + KR++D +C +L L     RP+ +I+  + +PP  +RPSV+MD S  +E+D+T +L
Sbjct: 228 VLGILKRISDEECRILGLDPQFARPDWMILQVLPIPPPPVRPSVMMDSSARSEDDLTHQL 287

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQ-VARPLSG 204
             II+ N +L+++  E N A   +    T  LQ  +A Y ++D+ G P + Q   RP+  
Sbjct: 288 AMIIRHNNNLKRQ--EQNGAPTHIINEFTQLLQFHIATYFDNDLPGQPRATQRSGRPIKS 345

Query: 205 FVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHN 264
             QRLK K+GR RGNL GKRV+++ RTVI+PDPN+ I E+ +P  +A  LTYPE V+ +N
Sbjct: 346 ICQRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYN 405

Query: 265 IEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
           +E+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RHL DG
Sbjct: 406 LERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDRHLEL--GYKVERHLCDG 463

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D VLFNRQPSLH+MSIM HR RIMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R 
Sbjct: 464 DFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRA 523

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           E   LM V   + +P++   ++   QD L     +T++DTF ++  F  +  +  D   +
Sbjct: 524 EVSELMIVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGK 583

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           V  PTPAI+KP  +WTGKQ+FS++I    NM       V+   + N      GD      
Sbjct: 584 V--PTPAIVKPRPIWTGKQIFSLIIPKQINM-------VRTAAWHND--SETGDN----- 627

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
              P D  V     EL++G L K TLG  +   L  V+  + G  A    +     L   
Sbjct: 628 --SPGDTMVRIEKGELLTGTLCKKTLGTSS-GSLIHVIWEEVGPDAARKFLGHTQWLVNY 684

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           W+  HGFSIGI D        +K    I +        IK   E +L+ +PG    ++ E
Sbjct: 685 WLLQHGFSIGIGDTIADSATMEKINDTIFKAKNEVKDLIKIAQEKQLESQPGRTMMESFE 744

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
             +  +LNR R++AG +   SL   N+   M   GSKGS INISQM+ACVGQQ+V G+R 
Sbjct: 745 NRVNQVLNRARDEAGSSAQKSLSESNNVKAMVTAGSKGSFINISQMIACVGQQNVEGKRI 804

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
           P GFIDR+LPHF +    P ++GFV NS+  GL+  EF+FH MGGREGL+DTAVKT++TG
Sbjct: 805 PFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTSETG 864

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           Y+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +     + D + MK 
Sbjct: 865 YIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ-----HLDSIKMKK 919

Query: 801 K 801
           K
Sbjct: 920 K 920



 Score =  197 bits (500), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 126/405 (31%), Positives = 211/405 (52%), Gaps = 46/405 (11%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T++  E  I    +R+    V  G  IG + AQSIGEP TQMTL TFH+AGV++ N+T 
Sbjct: 1067 LTKEAFEWVIGEIETRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1126

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR++EIIN AK+I TP +   L  E +  +  A+ V+  +E T L  V ++ +I    
Sbjct: 1127 GVPRLREIINVAKKIKTPSLYVHLKPEVSKEKERAKNVQCALEYTTLRSVTQATEIWYDP 1186

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKS 1058
               S +I  D+E ++  +   + D+  + I  +P +   + + +++  +KL +    +K 
Sbjct: 1187 DPMSTIIEEDVEFVKSYYEMPDEDVTPDKI--SPWLLRIELNREMMVDKKLSMADIAEKI 1244

Query: 1059 KIHF--------------------------------------ELYSLK---NVLPMVIVK 1077
             + F                                      +++  K   N+L  + ++
Sbjct: 1245 NLEFVDDLTCIFNDDNAEKLILRVRIMNDDVSKGGEVDQSDDDVFLKKIESNMLTEMALR 1304

Query: 1078 GIKTVERVVIAEKEKEKRKVKENGEKK-KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFE 1136
            GI  + +V I E ++++    E  + + ++ L  EG  + AVM  E +D  +T SNH+ E
Sbjct: 1305 GIPDIHKVFIREHKRQRFDEHEGFKTETEWMLDTEGVNMLAVMCNEDVDATRTVSNHLIE 1364

Query: 1137 VQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDK 1196
            V + LGIEA R  ++ E+ E +   G  ++ RH+ +L D+MT+RG ++ ITR GI + D 
Sbjct: 1365 VIEVLGIEAVRQALLKELREVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDT 1424

Query: 1197 SVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
              +M  SFE+T D L +A+V    D + GV+E I++G   P+GTG
Sbjct: 1425 GPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTG 1469


>gi|83320456|gb|ABC02855.1| RNA polymerase II largest subunit, partial [Boothiomyces
           macroporosum]
          Length = 999

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 297/725 (40%), Positives = 422/725 (58%), Gaps = 29/725 (4%)

Query: 66  ASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAV 122
           AS    + E    +   T  ++    L +  +++D +C  + LS    RPE +I+T + V
Sbjct: 102 ASFKASSDEDGEKIEARTIDISASKALEVLIKISDEECLKMGLSPIWARPEWMILTVLPV 161

Query: 123 PPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVA 182
           PP+A+RPS+ MDG    E+D+T +L  II+ N +L++  V+   +         LQ  V 
Sbjct: 162 PPMAVRPSISMDGMGRGEDDLTHKLSDIIKANTNLKKHEVDGAPSHIIAELENLLQWHVC 221

Query: 183 QYINSDVRGVP-FSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKI 241
            Y+N++  G+P  S +  RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL I
Sbjct: 222 TYMNNETAGIPQASQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSI 281

Query: 242 TEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRN 301
            +V +P  +AR LT+PE V+ +N+E L Q ++NGP+ +PGA+ +   D   R+     + 
Sbjct: 282 DQVGVPRSIARNLTFPETVTPYNLEMLSQMVRNGPNVHPGAKHV-IRDTGERIDLRYSKR 340

Query: 302 QLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNA 361
              + L+ G  V+RHL D D ++FNRQPSLH+MS+M HR +IMP+ T R N SV +PYNA
Sbjct: 341 GGDIHLQYGYKVERHLLDDDYIIFNRQPSLHKMSMMGHRVKIMPYSTFRLNLSVTSPYNA 400

Query: 362 DFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF 421
           DFDGDEMN+HVPQ+ E R E   L  V   + +P+    ++   QD L      T++DTF
Sbjct: 401 DFDGDEMNLHVPQSHETRAEIQQLCMVPKQIVSPQKNAPVMGIVQDTLCGIRKFTKRDTF 460

Query: 422 YDRAAFS--LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTV 479
             R      LM     DG+    +P PAILKP+ LWT KQ+ S++I P  NM  +     
Sbjct: 461 LHRDLLMNLLMWVPNWDGI----IPMPAILKPIPLWTAKQVMSIII-PQINMIGF----- 510

Query: 480 KEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLL 539
              T+ +       DE   I    P D  V   N EL++G L K T+G+ +  G+    +
Sbjct: 511 -HSTHPD-------DENTDI---SPGDTKVIIENGELLAGILCKKTVGS-SASGVIHTSM 558

Query: 540 RDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKI 599
            ++G   T    N    +   W+  +GFSIGI D    K         I+   +  N  I
Sbjct: 559 NEHGPEITKDFFNGTQAVVNYWLLQNGFSIGIGDTIADKNTMKAINDTIAHAKKEVNKII 618

Query: 600 KEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGS 659
            +    +L+  PG     + E+++   LNR R++AGK+   SL   N+   M   GSKGS
Sbjct: 619 LKAQNNELECLPGMTIRGSFESLVNMELNRARDNAGKSAQKSLKEFNNVKQMVVAGSKGS 678

Query: 660 PINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFF 719
            +NISQM ACVGQQ+V G+R P GF DR+LPHF +    P ++GFV NS+  GL+  EFF
Sbjct: 679 FLNISQMTACVGQQNVEGKRIPFGFKDRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFF 738

Query: 720 FHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           FH MGGREGL+DTAVKTA+TGY+ RRL+KALED +++YD +VRN+ G I+QF YG+DGMD
Sbjct: 739 FHAMGGREGLIDTAVKTAETGYIQRRLVKALEDATVKYDGTVRNSLGDIIQFSYGEDGMD 798

Query: 780 PANME 784
            A +E
Sbjct: 799 GARLE 803


>gi|255079898|ref|XP_002503529.1| predicted protein [Micromonas sp. RCC299]
 gi|226518796|gb|ACO64787.1| predicted protein [Micromonas sp. RCC299]
          Length = 1720

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 301/756 (39%), Positives = 450/756 (59%), Gaps = 48/756 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           ++ P   L + K ++D DC +L        P   ++  + VPP  +RPSV  D S  +E+
Sbjct: 189 VITPERALNILKNISDEDCRILGFDPEHAHPSWFVLQALPVPPHPVRPSVAFDSSTRSED 248

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAG--WETLQVEVAQYINSDVRGVPFSM-QV 198
           D+T +L  I++TN +LQ++  E N A + +     E LQ  +  ++++ V G P ++ + 
Sbjct: 249 DLTVKLMEIVRTNKNLQRQ--EQNGAPQHVVQEFTELLQYHIMTFMDNTVAGQPRALTRS 306

Query: 199 ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RP+    +RLKGK GR RGNL GKRV+++ RTVI+PDPNL + E+ +P  +A  +TYPE
Sbjct: 307 GRPIKSISERLKGKAGRIRGNLMGKRVDFSARTVITPDPNLMLDELGVPWSIALNMTYPE 366

Query: 259 RVSDHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
            V+ +NIE+LR+ ++NGP   PG   A+ I   DG  R+     + +    L+ G  V+R
Sbjct: 367 TVTPYNIERLRKLVENGPHPPPGETGAKYIIREDG-QRLDLRFMKRESDKRLEYGYKVER 425

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           H+ +GD VLFNRQPSLH+MSIM HR RIMP+ T R N SV  PYNADFDGDEMNMH+PQ+
Sbjct: 426 HMINGDCVLFNRQPSLHKMSIMGHRVRIMPYSTFRMNISVTPPYNADFDGDEMNMHLPQS 485

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCY 433
            E R E   LM V   + +P+  + ++A  QD L +  LIT++DTF  +  F   LM   
Sbjct: 486 METRAEVQELMMVPKMIVSPQANKPVMAIVQDTLLACRLITKRDTFITKDVFMNILMWHT 545

Query: 434 MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
             DG     +P PAI+KP  LWTGKQ+FS+   P  N+       ++   ++    R   
Sbjct: 546 NWDG----KVPKPAIIKPEPLWTGKQVFSMFT-PDVNV-------IRTSAWA----RDAD 589

Query: 494 DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
           D +  ++     D  V     ELI+G + K ++G+G    ++++   ++G  A    +++
Sbjct: 590 DMDFSVD-----DVGVRVERGELITGIMCKKSMGSGGGGLIHTIW-EEWGPTAARDFVSQ 643

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKE----YNEGKLQL 609
           +  L   W+ ++GF+IGI D        D+  + I++        +KE    Y  G+L++
Sbjct: 644 VQWLLNYWLLHYGFTIGISDTI----ADDRTMQTINDTITKAKSDVKEVVAIYQRGELEM 699

Query: 610 KPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVAC 669
           +PG  A Q+ E  +  ILN+ R++AG +   SL   N+  +    GSKGS +NISQM+AC
Sbjct: 700 QPGMTAQQSFEQKVNQILNKARDNAGNSAQTSLDDTNNVKMTVTAGSKGSFLNISQMIAC 759

Query: 670 VGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
           VGQQ+V G+R P GF DRSLPHF +    P A+GFV NS+  GL+  EFFFH MGGREGL
Sbjct: 760 VGQQNVEGKRIPFGFTDRSLPHFAKNDLGPEARGFVENSYLRGLTPQEFFFHAMGGREGL 819

Query: 730 VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGE 789
           +DTAVKT++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  +
Sbjct: 820 IDTAVKTSETGYIQRRLVKAMEDIIVKYDGTVRNSAGDVIQFLYGEDGMDATYVESQKID 879

Query: 790 PLNFDRLLMKVKATCPPA----GQRYLSPQQVSEIV 821
            L   R   + +    P     G+ ++S  QV+++ 
Sbjct: 880 TLRDSREKFRKRFHMDPDEPGFGRGWMSEAQVNDLA 915



 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/393 (33%), Positives = 202/393 (51%), Gaps = 48/393 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR++V     G  IG + AQSIGEP TQMTL TFHFAGV++ N+T GVPR+KE+IN AK+
Sbjct: 1053 SRFKVALAPPGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINIAKK 1112

Query: 955  ISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T  L  +   +   A+ V+  +E T L  VA + ++         VI  D E +
Sbjct: 1113 IKTPSLTVALRKDLAGDRAMAKNVQSILEYTTLHSVAAASEVWYDPDPTDTVIEEDKEFV 1172

Query: 1013 QDAHLCINADIVKESIVQTP---KIKLKQQHI---KVL----------DFRKLE--IFPP 1054
            +  +   + D+    +  +P   +I+L ++ +   K+L          DF++    IF  
Sbjct: 1173 RSYYEMPDEDVDPSRM--SPWLLRIELNREMMVDKKLLMADIAERINQDFQEDLSCIFND 1230

Query: 1055 VDKSKIHFELYSLKN------------------------VLPMVIVKGIKTVERVVIAEK 1090
             +  K+   +  L N                        +L  + ++GI  +++V I E 
Sbjct: 1231 DNSEKLILRIRLLDNEMGDKEAGPSTTEDEVFLKKLESQMLTNLALRGIPDIKKVFIREA 1290

Query: 1091 EKEK-RKVKENGEKK-KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARI 1148
                   V E   KK ++ L  EG  L  VM  E +D  +T SNH+ EV Q LGIEA R 
Sbjct: 1291 NVMGLDPVTETFTKKSEWMLDTEGVNLLEVMNHEDVDFTRTTSNHLIEVIQVLGIEAVRN 1350

Query: 1149 CIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTA 1208
             ++ E+   ++  G  ++ RH+ +L ++MT+RG ++ ITR GI +++   LM  SFE+T 
Sbjct: 1351 TLLKELRGVIEFDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRVETGPLMRCSFEETV 1410

Query: 1209 DHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            D L  A+     D + G+SE I++G   PLGTG
Sbjct: 1411 DILLEAAAFSERDGMNGLSENIMLGQFCPLGTG 1443


>gi|357472533|ref|XP_003606551.1| DNA-directed RNA polymerase [Medicago truncatula]
 gi|355507606|gb|AES88748.1| DNA-directed RNA polymerase [Medicago truncatula]
          Length = 550

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 301/571 (52%), Positives = 388/571 (67%), Gaps = 63/571 (11%)

Query: 734  VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
            VKTADTGYMSRRL+KALEDL + YD +VR+  G IVQF YGDDGMDPA        P + 
Sbjct: 2    VKTADTGYMSRRLMKALEDLFLHYDYTVRDTNGSIVQFCYGDDGMDPAIC------PADG 55

Query: 794  DRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEA-----FLNSLRKFFEGQ 848
            + +++     C    ++ LS   +S +VEK   A  K+  S+      FL SL+ F E  
Sbjct: 56   NDVILSSSDVCKVLHEK-LSEVGMSMLVEKN--ASDKDITSDIGFSADFLKSLQSFVE-- 110

Query: 849  QDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAI 908
                 K     + IG DD S  L+    K SGI+ +QLEVF+  C SRYR+K++EAGT I
Sbjct: 111  -----KNTTLTKSIGEDDSSN-LKNFLPKISGISRRQLEVFLDICLSRYRLKKIEAGTPI 164

Query: 909  GAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECND 968
            GAIGA SIGEPGTQMTLKTFHFAGVASMN+T GVPRI EIINGA  I TPIITA LE +D
Sbjct: 165  GAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIIEIINGASNIKTPIITAILERDD 224

Query: 969  NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESI 1028
            N   A++VKG IEKT LGQVAKSIK+V +++LA++ I+LDM  I+ A L I+A+IVKESI
Sbjct: 225  NAKTAKIVKGCIEKTNLGQVAKSIKVVYSNKLAAVFISLDMGIIEKAGLNIDANIVKESI 284

Query: 1029 VQTPKIKLKQQHIKVLDFRKLEIFPP-VDKSKIHFELYSLKNVLPMVIVKGIKTVERVVI 1087
            +QT K+KLK +++K+LD +KL++ P    +S++ F+L +LKN+LP V+VKG+KTVER V+
Sbjct: 285  LQTGKLKLKPENVKILDIKKLQVEPQGSSRSELLFQLNNLKNLLPSVVVKGVKTVERTVL 344

Query: 1088 AEKEKEKRKVKENG--EKKKY-------------------RLLVEGT------------G 1114
                 E +K+K N   E +KY                   R+++ G             G
Sbjct: 345  -----EIKKIKTNSGKESEKYTLLGMSVAPKECSRSVLRRRMILTGNIIVASSLVLLNKG 399

Query: 1115 LQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLA 1174
            L+ VMG EG+DG KT +NHI E+   LGIEAAR  IID+I  TMK HGMSID RH+MLLA
Sbjct: 400  LKEVMGIEGVDGHKTVTNHIIELMNILGIEAARYGIIDQIQYTMKQHGMSIDVRHIMLLA 459

Query: 1175 DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGI 1234
            D+MT RG+VLG+TR GIQKM +S LMLASFE + D+LF+AS+ G+ D IEGVS+CIIMG 
Sbjct: 460  DMMTVRGQVLGMTRHGIQKMGRSALMLASFESSTDYLFDASLRGKGDPIEGVSDCIIMGK 519

Query: 1235 PMPLGTGILKIRQRDAVPPMLKYGAPDPIMS 1265
            P+ +GTG+++++QR   PP+L  GA  PI+S
Sbjct: 520  PIHIGTGMIEVKQR-LEPPVLLQGAK-PILS 548


>gi|296109331|ref|YP_003616280.1| DNA-directed RNA polymerase subunit A' [methanocaldococcus infernus
           ME]
 gi|295434145|gb|ADG13316.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus infernus
           ME]
          Length = 886

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 309/814 (37%), Positives = 461/814 (56%), Gaps = 67/814 (8%)

Query: 5   KMEALRKTDLMK-SIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQ 63
           KME L +    K    K+    ASK   CP CG +   +K                    
Sbjct: 118 KMEKLEREGGNKWEACKETYQEASKISVCPYCGEVKWEIK-------------------F 158

Query: 64  EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNI 120
           E  S+    +E       A   L+P +V  + +++ D DC +L L+    RPE +++T +
Sbjct: 159 EKPSSFYRIEEG------AEIKLSPADVREILEKIPDEDCILLGLNPKVARPEWMVLTVL 212

Query: 121 AVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
            VPP+ +RPS+ ++  + +E+D+T +L  I++TN  L + +            W  LQ  
Sbjct: 213 PVPPVTVRPSITLETGERSEDDLTHKLVEIVRTNNRLMEHIESGAPNLVVEDVWSLLQYH 272

Query: 181 VAQYINSDVRGV-PFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
           +  Y ++++ G+ P   +  RPL    QRLKGK+GRFR NL+GKRV ++ RTVISPDP L
Sbjct: 273 IDTYFDNELPGISPAKHRSGRPLKTLAQRLKGKEGRFRYNLAGKRVNFSSRTVISPDPCL 332

Query: 240 KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA----RMIRYPDGTA--- 292
            I EV +P  +A+ LT PE+V+ +NIEK+++ I+NGP+K+PGA    R I   DG     
Sbjct: 333 SINEVGVPEVVAKELTVPEKVTKYNIEKIKELIKNGPNKHPGAKYIIRQIVGRDGMVHEY 392

Query: 293 RVLYGKFRNQLAVE-LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRF 351
           R+   +      VE +K G IV+RHL DGD+VL+NRQPSLHRMSIM H+ R++P+RT R 
Sbjct: 393 RIKLDENNKDFWVENIKEGDIVERHLMDGDIVLYNRQPSLHRMSIMGHKVRVLPYRTFRH 452

Query: 352 NESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTS 411
           N  VC PYNADFDGDEMN+H PQTEEAR EA  LM V+ ++ +P+ G  ++ +  DF++ 
Sbjct: 453 NLCVCPPYNADFDGDEMNLHAPQTEEARAEAETLMLVEKHILSPRFGGPIIGAIHDFISG 512

Query: 412 SFLITRKDTFYDRAAFSLMCCYMGDGM---DRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
           ++++T      D A   L    + D +   D+V+   P       L++GK++FS  +   
Sbjct: 513 AYILTSNYFTKDEATLILRSGGIKDELWEPDKVENGIP-------LYSGKKIFSKALPKG 565

Query: 469 ANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGN 528
            N+R   N+  K  +   +               C  D +V  ++ EL+ G + K   G 
Sbjct: 566 LNLRYKANICRKCDSCKKE--------------NCEYDAYVIIKDGELVKGVIDKK--GY 609

Query: 529 GNKDGL-YSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKL 587
           G + GL    +++++G  A    ++   K++ R +   GF+ GIDD    +E   +  K+
Sbjct: 610 GAESGLILHTIVKEFGPEAGRKFLDSSTKMAIRTLMLRGFTTGIDDEDLPEEALREIEKV 669

Query: 588 ISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNS 647
           + E     +  I++Y +G+L+L PG    ++ EA I  +L   R+ AG+     L   N 
Sbjct: 670 LDEAERKVDEIIEQYEKGELELLPGMSPEESREAHIMRVLREARDKAGEIAERYLGLDNH 729

Query: 648 PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVAN 707
            +IM+  G++G  +NI+QM AC+GQQSV G+R   G+ DR LPHF +      A GFV +
Sbjct: 730 AVIMAITGARGKILNITQMAACIGQQSVRGKRIFRGYKDRVLPHFEKGDLGARAHGFVRS 789

Query: 708 SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
           S+  GLS TEFFFH +GGREGLVD AV+TA +GYM RRLI AL+DL  ++D +VR++ G 
Sbjct: 790 SYKKGLSPTEFFFHAIGGREGLVDQAVRTAQSGYMQRRLINALQDLKSEFDFTVRDSRGI 849

Query: 768 IVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVK 801
           +VQF YG+DG+DP  M    GE +N DR++ KVK
Sbjct: 850 VVQFRYGEDGVDP--MLADRGEAVNIDRIIDKVK 881


>gi|83320448|gb|ABC02851.1| RNA polymerase II largest subunit, partial [Rhopalomyces elegans]
          Length = 792

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 289/707 (40%), Positives = 417/707 (58%), Gaps = 27/707 (3%)

Query: 60  ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLI 116
           E L+ +A+  + +KE          ++ P   L + KR++D D E + LS    RPE LI
Sbjct: 109 EGLKLYATQRSSSKEQNPLE--GKQLVKPDQALQILKRISDDDLESMGLSVEFARPENLI 166

Query: 117 ITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWET 176
           I  + VPP  +RPS+ MDG+   E+D+T +L  +++ NA + +   +      +      
Sbjct: 167 IMVLPVPPPQVRPSIQMDGTSKGEDDLTHKLSDVLKANAXVARRERDGAPHHVTEEFETL 226

Query: 177 LQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISP 235
           LQ  VA Y+++D+ G P ++Q + RPL     RLKGK+GR RGNL GKRV+++ RTVI+ 
Sbjct: 227 LQFHVATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 286

Query: 236 DPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL 295
           DPNL I EV +P+ +A+ LT+PE V+ +N+ KL++ + NGP+ +PGAR + Y D   R+ 
Sbjct: 287 DPNLSIDEVGVPLLIAKNLTFPEIVTPYNVGKLQELVANGPNAHPGARYV-YRDNGERID 345

Query: 296 YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESV 355
               R    + L+ G  V+RHL DGD+V+FNRQPSLH+MS+M HR R+MP  T R N SV
Sbjct: 346 LRFNRRGGDIPLQYGWRVERHLVDGDLVIFNRQPSLHKMSMMGHRVRVMPHHTFRLNLSV 405

Query: 356 CNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLI 415
             PYNADFDGDEMNMHVPQ+ E++ E   +  V   + +P+    ++   QD L    + 
Sbjct: 406 TTPYNADFDGDEMNMHVPQSLESKAEIQEICMVPRQIVSPQKNAPVMGIVQDTLCGVNIF 465

Query: 416 TRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYV 475
           TR+DTF  R     +  ++ +   R+  P PAILKP  LWTGKQ+ +++I          
Sbjct: 466 TRRDTFLSRQQTMNILMWVPNWDGRI--PAPAILKPKPLWTGKQMLTLII---------- 513

Query: 476 NLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLY 535
               K  +Y+       G+ +     + PND  V   N EL++G + K T+G G+   L 
Sbjct: 514 ---PKGVSYTGA---HSGNPDGEHPHLTPNDTKVLIENGELLTGIVCKKTVGVGS--ALI 565

Query: 536 SVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVC 595
            V++R++G   T    N +  ++  W+  HGFSIGI D    +   +     I+      
Sbjct: 566 QVIMREHGPEVTKYFFNGIQHITNYWLLQHGFSIGIGDAVADRHTMETITNTITNAKTAV 625

Query: 596 NVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCG 655
           N  I E  + +L  +PG    +T E  +   LNR RE+AGK+   SL   N+  +M   G
Sbjct: 626 NEVIYEAQQDRLDCEPGMTLRETFEYKVNRELNRARENAGKSAQSSLRRNNNVKLMVTAG 685

Query: 656 SKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSA 715
           SKG+ +NI QM ACVGQQ+V G+R P GF  R+LPHF +    PA++GFV NS+  GL+ 
Sbjct: 686 SKGNYLNICQMTACVGQQNVEGKRIPFGFQYRTLPHFTKDDHTPASRGFVDNSYLRGLTP 745

Query: 716 TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
           TEFFFH M GREGL+DTAVKTA+TGY+ RRL+KALED+ ++YD +VR
Sbjct: 746 TEFFFHAMSGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVR 792


>gi|379005505|ref|YP_005261177.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum oguniense TE7]
 gi|375160958|gb|AFA40570.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum oguniense TE7]
          Length = 884

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 291/771 (37%), Positives = 438/771 (56%), Gaps = 48/771 (6%)

Query: 14  LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTK 73
           L +++ ++    A++ + CP CGY                 R+KV      F       +
Sbjct: 137 LAQNLHERIRRKAAERMTCPHCGY----------------KRNKV-----RFERPYYFYE 175

Query: 74  ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPS 130
           E++   N A   L+P  +     ++   D E+L ++    RPE  I+  + VPP  +RPS
Sbjct: 176 ETE---NGALVKLDPEMLRDRLGKIPSEDLELLGINPSVFRPEWAILKVLPVPPPHVRPS 232

Query: 131 VIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVR 190
           + ++    +E+D+T +L  II+ N  L+  +            W+ LQ  VA Y ++++ 
Sbjct: 233 IQLETGIRSEDDLTHKLVDIIRMNEKLKIAIETGAPTNVVDNLWDLLQYHVATYFDNELP 292

Query: 191 GVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIR 249
           G+P +     RPL G  QRLKGK+GRFRG+LSGKRV ++ RTVISPDP++ I EV +P  
Sbjct: 293 GIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPHISINEVGVPTD 352

Query: 250 MARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELK 308
           +A+ILT PE+V+  NI+ LR+ +  GP+ +PGA  +  P+G    L Y K R  LA  L 
Sbjct: 353 IAKILTVPEKVTAWNIDVLREYVIRGPETWPGANYVVTPEGRRIDLRYVKDRKALAERLA 412

Query: 309 SGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEM 368
            G +V+RHL DGD+VLFNRQPSLHR+S+M H  +++P RT R + +VC PYNADFDGDEM
Sbjct: 413 PGWVVERHLRDGDIVLFNRQPSLHRVSMMGHLVKVLPGRTFRLHLAVCPPYNADFDGDEM 472

Query: 369 NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 428
           N+HVPQTEEAR EA LLM V+N++ TP+ G  ++ + QD++  ++L++ K TF  +   +
Sbjct: 473 NLHVPQTEEARAEARLLMLVENHIITPRYGGAIIGARQDYIIGAYLLSHKTTFLTKKEVA 532

Query: 429 LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKL 488
            +   +G G    D P PAIL PVELWTGKQ+ S  +    N        V+   + +K 
Sbjct: 533 FL---LGAGKSEEDPPEPAILYPVELWTGKQIISHFLPKDFNW-------VQPTAFKSK- 581

Query: 489 IRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
                    +    C  D ++   N  L  G L K ++G    D L+  + RDY      
Sbjct: 582 --------CQDAYTCHGDEWIIVLNGYLAKGVLDKKSIGAEQVDSLWHRIARDYPPDVAR 633

Query: 549 GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
             ++   +L  R++   GF+  +D V    E   +  ++I +  +     I+++  G+L+
Sbjct: 634 RWLDSSLRLFLRYLDLRGFTFAMDSVYIPTEAYREVEEIIEQALKKVEGLIEDFTSGRLE 693

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
             PG    +T E  +TDIL+R+REDA +     +   +   +M++ G++GS +NI QMVA
Sbjct: 694 AMPGFTVEETFENKVTDILSRVREDAAQVVEKYIDKNSEGYLMAKTGARGSLVNIVQMVA 753

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            +GQQ++ G R   GF  R+LPHFP       + GFV + F  GL+  E+FFH   GR+G
Sbjct: 754 TLGQQTIRGERIRRGFRSRTLPHFPVGDIGAFSGGFVKHCFRCGLTPVEYFFHAAAGRDG 813

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           L+DTAV+TA +GYM RRLI AL+D+ + YD +VR  G  ++Q LYG+DG+D
Sbjct: 814 LIDTAVRTAQSGYMQRRLINALQDVYVAYDGTVRFGGSMLLQPLYGEDGVD 864


>gi|329132889|gb|AEB78335.1| Rpb1, partial [Jakoba libera]
          Length = 1040

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 298/745 (40%), Positives = 448/745 (60%), Gaps = 33/745 (4%)

Query: 81  VATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGS- 136
           V+  IL       + K +T+  CE+L  +    RP+ L++T + VPP A+RPS+ M GS 
Sbjct: 122 VSQRILTAEEAHQVLKALTNEACEMLGFNPNFARPDWLLVTVLPVPPPAVRPSIDMGGSG 181

Query: 137 QSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           ++ ++D+T +L  I+ TN  L+++     +        E LQ  +  ++++++ G     
Sbjct: 182 RAAQDDLTFKLGDILSTNQLLRRQEEHGVNPQTLRNTEEMLQFHLFTFVDNELAG----- 236

Query: 197 QVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTY 256
           +  + L    QRLKGK GR R NL GKRV+++ R+VI+ DP L+I +V +P+ +A+I+T 
Sbjct: 237 KSGKVLKSISQRLKGKSGRIRNNLMGKRVDFSARSVITADPILEIDQVGVPVDIAKIMTV 296

Query: 257 PERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
           PE V+  NI++L++ + +GP  +PGAR +   DGT + L  +F       L  G  V+RH
Sbjct: 297 PEVVTPFNIKRLQELVNHGPSVHPGARFVFMEDGTRQDL--EFSPNFP--LAYGYTVERH 352

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           LED DVVLFNRQP+LHRM +M HR + M ++T R N SV +PYNADFDGDEMN+H PQ+ 
Sbjct: 353 LEDNDVVLFNRQPTLHRMGMMGHRVKTMKFKTFRLNLSVTSPYNADFDGDEMNLHAPQSL 412

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
             + E L LM +  N+ +PK+   ++   QD L +   IT +D F +R  F + C    D
Sbjct: 413 LTKAELLELMMIPKNMISPKSNSPVMGLVQDSLLACRRITLRDVFLERDHF-MNCLMWVD 471

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
             D   LP PAILKP  LWTGKQLFS ++ P  N+R    L  K+   S   + + GD +
Sbjct: 472 DFDG-QLPMPAILKPKPLWTGKQLFSQIL-PKVNLR----LRSKDHPRSENTLVSPGDTQ 525

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
           + IE              EL++G+  K T+G  ++  L  V+  + G    +  M ++ +
Sbjct: 526 VIIE------------QGELLAGKCCKNTMGT-SQGSLVHVVYTEQGPEVCARMMGQVQR 572

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           L   W+   GFSIGI D  P +       + I+++ +     IKE ++ KL+ KPG    
Sbjct: 573 LVNYWLLTVGFSIGIGDCVPDEITMRTITEAITDDKKQVTGVIKELHKRKLEKKPGLTLL 632

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           ++ EAV+ D LN+ R+ AG A + SL  RN+   M   GSKG+ +NISQ++ACVGQQ+V 
Sbjct: 633 ESFEAVVNDKLNQARDKAGNAALESLSERNNFKNMVTAGSKGNELNISQVIACVGQQNVE 692

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           GRR P GF +R+LPHF ++   P +KGFV+NS+ SGL+  EFFFH+MGGREG++DTAVKT
Sbjct: 693 GRRIPFGFRNRTLPHFRQENYGPESKGFVSNSYLSGLTPQEFFFHSMGGREGIIDTAVKT 752

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           ++TGY+ RRL+KA+ED+ ++YD +VR+A G ++QF+YG+DG+D   +E ++ E ++  + 
Sbjct: 753 SETGYIQRRLVKAMEDIMVRYDGTVRDARGKVLQFVYGEDGLDSIRVESQNFELVSMSQN 812

Query: 797 LMKVKATCPPAGQRYLSPQQVSEIV 821
             +     PP     LS  Q S  V
Sbjct: 813 AFRQLFEYPPHNHPLLSSSQSSFTV 837



 Score = 69.7 bits (169), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 11/163 (6%)

Query: 784  EGKSGEPLNFDRLLMKVKAT--CPPAGQRYLSPQQVSEIVEK-QLAAYGKESCSEAFLNS 840
            EG+S  P+N DRL++  + T       +  L P  V  +    Q+    K+ CS+  + +
Sbjct: 885  EGRSPMPVNVDRLIVNAQKTFTIDMYSKSDLHPNDVPPVPSPWQVLRAVKKLCSDVMVTN 944

Query: 841  LRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVK 900
            +    EG ++       ++ +I    ++++  +   +   + ++  E  I    +R+   
Sbjct: 945  IPDS-EGSRNA-----TYLFEIYL--RTKLASKRVIQKYHLDKQSFEWLISEIRTRFFQA 996

Query: 901  RVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVP 943
             +  G  +G I AQS+GEP TQMTL TFHFAGV++ N+T GVP
Sbjct: 997  LITPGECVGVIAAQSVGEPATQMTLNTFHFAGVSAKNVTXGVP 1039


>gi|145592516|ref|YP_001154518.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum arsenaticum DSM
           13514]
 gi|145284284|gb|ABP51866.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum arsenaticum
           DSM 13514]
          Length = 884

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 291/771 (37%), Positives = 438/771 (56%), Gaps = 48/771 (6%)

Query: 14  LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTK 73
           L +++ ++    A++ + CP CGY                 R+KV      F       +
Sbjct: 137 LAQNLHERIRRKAAERMTCPHCGY----------------KRNKV-----RFERPYYFYE 175

Query: 74  ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPS 130
           E++   N A   L+P  +     ++   D E+L ++    RPE  I+  + VPP  +RPS
Sbjct: 176 ETE---NGALVKLDPEMLRDRLSKIPSEDLELLGINPSVFRPEWAILKVLPVPPPHVRPS 232

Query: 131 VIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVR 190
           + ++    +E+D+T +L  II+ N  L+  +            W+ LQ  VA Y ++++ 
Sbjct: 233 IQLETGIRSEDDLTHKLVDIIRMNEKLKIAIETGAPTNVVDNLWDLLQYHVATYFDNELP 292

Query: 191 GVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIR 249
           G+P +     RPL G  QRLKGK+GRFRG+LSGKRV ++ RTVISPDP++ I EV +P  
Sbjct: 293 GIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPHISINEVGVPTD 352

Query: 250 MARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELK 308
           +A+ILT PE+V+  NI+ LR+ +  GP+ +PGA  +  P+G    L Y K R  LA  L 
Sbjct: 353 IAKILTVPEKVTAWNIDVLREYVIRGPETWPGANYVVTPEGRRIDLRYVKDRKALAERLA 412

Query: 309 SGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEM 368
            G +V+RHL DGD+VLFNRQPSLHR+S+M H  +++P RT R + +VC PYNADFDGDEM
Sbjct: 413 PGWVVERHLRDGDIVLFNRQPSLHRVSMMGHLVKVLPGRTFRLHLAVCPPYNADFDGDEM 472

Query: 369 NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 428
           N+HVPQTEEAR EA LLM V+N++ TP+ G  ++ + QD++  ++L++ K TF  +   +
Sbjct: 473 NLHVPQTEEARAEARLLMLVENHIITPRYGGAIIGARQDYIIGAYLLSHKTTFLTKKEVA 532

Query: 429 LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKL 488
            +   +G G    D P PAIL PVELWTGKQ+ S  +    N        V+   + +K 
Sbjct: 533 FL---LGAGKSEEDPPEPAILYPVELWTGKQIISHFLPKDFNW-------VQPTAFKSK- 581

Query: 489 IRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
                    +    C  D ++   N  L  G L K ++G    D L+  + RDY      
Sbjct: 582 --------CQDAYTCYGDEWIIVLNGYLAKGVLDKKSIGAEQVDSLWHRIARDYPPDVAR 633

Query: 549 GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
             ++   +L  R++   GF+  +D V    E   +  ++I +  +     I+++  G+L+
Sbjct: 634 RWLDSSLRLFLRYLDLRGFTFAMDSVYIPTEAYREVEEVIEQALKKVEGLIEDFTSGRLE 693

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
             PG    +T E  +TDIL+R+REDA +     +   +   +M++ G++GS +NI QMVA
Sbjct: 694 AMPGFTVEETFENKVTDILSRVREDAAQVVEKYIDKNSEGYLMAKTGARGSLVNIVQMVA 753

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            +GQQ++ G R   GF  R+LPHFP       + GFV + F  GL+  E+FFH   GR+G
Sbjct: 754 TLGQQTIRGERIRRGFRSRTLPHFPVGDIGAFSGGFVKHCFRCGLTPVEYFFHAAAGRDG 813

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           L+DTAV+TA +GYM RRLI AL+D+ + YD +VR  G  ++Q LYG+DG+D
Sbjct: 814 LIDTAVRTAQSGYMQRRLINALQDVYVAYDGTVRFGGSMLLQPLYGEDGVD 864


>gi|397135922|gb|AFO11456.1| RNA polymerase I, partial [Pachysolen tannophilus]
          Length = 870

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 298/766 (38%), Positives = 449/766 (58%), Gaps = 47/766 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  +L +FK ++  DC+ L  +E   RPE +IIT + VPP A+RPSV ++ +   E+
Sbjct: 12  LLTPAEILNVFKHISPEDCKKLGFNEDYARPEWMIITVLPVPPPAVRPSVQVNDTARGED 71

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA- 199
           D+T +L  I++ N S+Q+ L    S    ++ +E L Q  VA Y+++D+ G P ++Q + 
Sbjct: 72  DLTFKLADIVKYNMSVQK-LEMDGSPLHVISEYEALLQFHVATYMDNDIAGQPQALQKSG 130

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +AR LTYPE 
Sbjct: 131 RPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPRSIARTLTYPEM 190

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI KL   ++NGP+++PGAR + + D   R+     +    + L+ G IV+RHL D
Sbjct: 191 VTPYNIHKLTLLVRNGPNEHPGARYV-FRDTGERIDLKYHKRAGDIALQYGWIVERHLMD 249

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
            D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R
Sbjct: 250 NDPVLFNRQPSLHKMSMMTHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 309

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYMGDG 437
            E   L  V   + +P++ + ++   QD L     +T +D F  YD+    L      DG
Sbjct: 310 AELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDVFIEYDQVMNILYWIPTWDG 369

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
           +    +P P I+KP  LWTGKQ+ S++I P       +N+  K++ ++            
Sbjct: 370 V----IPEPTIIKPKPLWTGKQMLSMVI-PKG-----INIERKDEKFT------------ 407

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
               +  +D  +   + E++ G + K T+G     GL   ++R+ G    +     + K+
Sbjct: 408 ---YLSKDDTGMLIIDGEIMLGVVNKKTVG-ATGGGLIHAVMREKGPQVCADLFGNIQKV 463

Query: 558 SARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
              W+ ++GFSIGI D +     +      ++    +V  + ++  N  +L  +PG    
Sbjct: 464 VNYWLLHNGFSIGIGDTIADAPTVRQITNTILKAKDKVQEIILRAQN-NELPPEPGMTLR 522

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           ++ E  ++ +LN+ R+D GKA   +L   N+   M   GSKGS INISQM ACVGQQ V 
Sbjct: 523 ESFEQNVSQVLNQARDDVGKATADALKDLNNVKQMVSAGSKGSNINISQMSACVGQQIVE 582

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF DRSLPHF +    P ++GFV NS+  GL+  EFFFH M GREGL+DTAVKT
Sbjct: 583 GKRIPFGFSDRSLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKT 642

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           A+TGY+ RRL+KALED+ + YD + RN+ G ++QF+YG+DG+D   +E ++         
Sbjct: 643 AETGYIQRRLVKALEDIMVHYDGTTRNSLGNVLQFIYGEDGLDATQVEKQA--------- 693

Query: 797 LMKVKATCPPAGQRY-LSPQQVSEIVEKQLAAYGKESCSEAFLNSL 841
           +  +  T     +RY +     S+ +  +L  YG E   +  L S+
Sbjct: 694 IDTIPGTDEAFERRYRIDVMDQSKSIRPELIEYGSEIIGDVNLQSI 739


>gi|3172134|gb|AAC18416.1| RNA polymerase II largest subunit [Bonnemaisonia hamifera]
          Length = 1732

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 292/696 (41%), Positives = 424/696 (60%), Gaps = 27/696 (3%)

Query: 94  LFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
           +FKR+++++CE + LS    RPE LI+T + VPP  +RPSV M G   NE+D+T +L  I
Sbjct: 118 IFKRISNSECEAMGLSWRWSRPEWLILTLLPVPPPQVRPSV-MRGGLRNEDDLTNKLGDI 176

Query: 151 IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGV-PFSMQV-ARPLSGFVQR 208
           ++ N +L+        A       + +Q  VA Y+N+++ G+ P +++  +R +    QR
Sbjct: 177 VKNNNTLRNLEATGAVAHAIREQIDLVQYHVATYMNNELPGIMPATVRGGSRAIKSIGQR 236

Query: 209 LKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKL 268
            KGK+GR RGNL GKRV+++ RTVI+PDPNL++ EV +P  +AR LTYPE V+ +NI+++
Sbjct: 237 FKGKEGRVRGNLMGKRVDFSARTVITPDPNLRLHEVGVPFSIARNLTYPEIVTSYNIDEM 296

Query: 269 RQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQ 328
           ++ ++NGPD+YPGA+ I   DG  +V     RN+  ++L+ G  V RH+ DGD VLFNRQ
Sbjct: 297 QKLVENGPDEYPGAKYIEREDGF-KVNLAYVRNRSELQLELGYKVIRHIRDGDYVLFNRQ 355

Query: 329 PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGV 388
           PSLH+MSIM HR R++P+ T R N SV +PYNADFDGDEMN+HVPQT + R E   LM V
Sbjct: 356 PSLHKMSIMGHRIRVLPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTHQTRAEVQELMLV 415

Query: 389 QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAI 448
            + + +P+  + ++   QD L    L T++DTF +R     +  ++GD  D V +P PAI
Sbjct: 416 PHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFLERDLMMNLLMHVGD-WDGV-IPKPAI 473

Query: 449 LKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGF 508
            KP  LWTGKQ+FS+++ P   +R  +     EKT                  + P D  
Sbjct: 474 YKPRPLWTGKQVFSLILPPVNIIRFNITHPDDEKT-----------------DISPGDTK 516

Query: 509 VYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFS 568
           VY    +LI G + K T+G+ + +GL  +  +++G   T   ++++  L   +I     S
Sbjct: 517 VYISRGQLICGIVDKRTVGS-SANGLIHITWKEFGPKITDTLISQIQVLVNHYILQRRQS 575

Query: 569 IGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILN 628
           IGI D              I    E   + +++  E +L L PG    ++ E  +  +LN
Sbjct: 576 IGIGDTIADDATMRNVIDTIQGAKEEVKLLVRKAQEKELVLLPGKGMMESFETEVNKVLN 635

Query: 629 RIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRS 688
             R+ +G +   SL   N+   M   GSKGS INISQ+ ACVGQQ+V G+R   GF  R+
Sbjct: 636 GARDKSGASAQRSLLKSNNIKRMVSAGSKGSFINISQICACVGQQNVEGKRIAYGFHRRT 695

Query: 689 LPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIK 748
           LPHF      P ++GFV NS+  GL+ +EFFFH MGGREGL+DTAVKTA+TGY+ RRLIK
Sbjct: 696 LPHFVLDDLGPESRGFVENSYLRGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK 755

Query: 749 ALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           A+ED+ ++YD +VRN+   IV+FLYG+D MD   +E
Sbjct: 756 AMEDIMVRYDGTVRNSCNHIVEFLYGEDSMDATFLE 791



 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 87/143 (60%)

Query: 1103 KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHG 1162
            ++++ L  +G  L AVM  E +D  +T SN I E+ + LGIEA R  +++EI   +   G
Sbjct: 1257 REEWVLDTDGVNLLAVMSHEAVDHTRTTSNDIVEIFEVLGIEAVREVLLNEIRGVISFDG 1316

Query: 1163 MSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDR 1222
              ++ RH+ +L D MT+RG ++ ITR G+ ++D   LM  SFE T D L  A++ G  D 
Sbjct: 1317 AYVNYRHLAILVDTMTYRGHLMAITRHGVNRVDTGPLMKCSFEGTTDILLEAAMWGERDG 1376

Query: 1223 IEGVSECIIMGIPMPLGTGILKI 1245
            + GV+E I++G   P+GTG  ++
Sbjct: 1377 LRGVTENIMLGQLAPIGTGSFRL 1399



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 72/120 (60%), Gaps = 2/120 (1%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+ + RV  G  IGAI AQSIGEP TQMTL TFH+AGV++ N+T GVPR+KEIIN +K 
Sbjct: 999  NRFMMCRVAPGENIGAIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKN 1058

Query: 955  ISTPIITAELECN--DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L+     ++  A+ ++  ++ T L  V +  +I         V+  D E +
Sbjct: 1059 TKTPSLTVYLKSQYAGDKEKAKEIQASLQHTTLHDVTQCTEIYYDPDPMDTVVDADREMV 1118


>gi|33326215|gb|AAQ08517.1| RNA polymerase II largest subunit [Nymphaea odorata]
          Length = 1013

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 307/747 (41%), Positives = 437/747 (58%), Gaps = 33/747 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D DC +L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+D
Sbjct: 134 LSAERVLNVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDD 193

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++      A       + LQ  +A Y ++++ G P + Q + RP
Sbjct: 194 LTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 253

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  +TYPE V+
Sbjct: 254 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNMTYPETVT 313

Query: 262 DHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            +NIE+L++ ++NGP   PG   A+ I   DG  RV     R      L+ G  V+RHL 
Sbjct: 314 PYNIERLKELVENGPHPPPGKTGAKYIIREDGQ-RVDLRYLRKSSDHHLELGYKVERHLI 372

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ  E 
Sbjct: 373 DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQCFET 432

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
           R E L LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D  
Sbjct: 433 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFD 492

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            ++  P PAI+KP  LWTGKQ+F+++I    N+  Y     + +T       T GD  +R
Sbjct: 493 GKI--PAPAIMKPRPLWTGKQVFNLIIPKQINLIRYSAWHSESETG----FITPGDTCVR 546

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
           IE              EL+SG L K T+G  +   L  V+  + G  A    +     L 
Sbjct: 547 IE------------RGELLSGTLCKKTMGTSS-GSLIHVIWEEVGPDAARKFLGHTQWLV 593

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
             W+  + FSIGI D        +K  + IS+        IK   E +L+ +PG    ++
Sbjct: 594 NYWLLQNAFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMES 653

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+
Sbjct: 654 FENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 713

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R P GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++
Sbjct: 714 RIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 773

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL-----NF 793
           TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L      F
Sbjct: 774 TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEF 833

Query: 794 DRLLMKVKATCPPAGQRYLSPQQVSEI 820
           D++  K +         YL P  V ++
Sbjct: 834 DKVF-KFEFDDENWDPSYLQPDFVEDL 859


>gi|160331837|ref|XP_001712625.1| rpb1 [Hemiselmis andersenii]
 gi|159766074|gb|ABW98300.1| rpb1 [Hemiselmis andersenii]
          Length = 1464

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 295/749 (39%), Positives = 445/749 (59%), Gaps = 36/749 (4%)

Query: 83  TYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSN 139
           T I++   +  +FK + D DC+ + L+    RP+ +I+T + VPP  IRPSV+ D +   
Sbjct: 186 TRIMSAERIHEIFKNIVDLDCKKIGLNPKLCRPDWMILTVLPVPPPTIRPSVMFDMTSRA 245

Query: 140 ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA 199
           E+D+T +L  II+TN SL Q L+    A      +  LQ  +  Y+N+ V  +  S+Q +
Sbjct: 246 EDDLTYKLGDIIRTNKSLSQLLISCAPAQVINEQFNLLQYHIGSYMNNKVPNIAKSIQKS 305

Query: 200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RP+    QRL+GK+GR RGNL GKRV+++ RTVI+PDPN+ + E+ IP  +A  LTYPE
Sbjct: 306 GRPIKSLAQRLQGKEGRVRGNLMGKRVDFSARTVITPDPNILLDEIGIPWSIALNLTYPE 365

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            VS+ N++K+++ +QNGP  +PGA+ I   DG +R+     +N   ++L+ G  ++RHL+
Sbjct: 366 IVSEFNMKKMKKIVQNGPIHHPGAKYIIRNDG-SRIDLRFVKNLSEIKLEIGNQIERHLQ 424

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD+VLFNRQPSLH+MS+M H  +IM + T R N S  +PYNADFDGDEMN+H+PQT E 
Sbjct: 425 DGDLVLFNRQPSLHKMSMMGHIVKIMHFSTFRMNLSATSPYNADFDGDEMNLHLPQTLEG 484

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GD 436
           ++E L L+ + N + + +  + ++   QD L  SFL+++++ F D + F L+   +   D
Sbjct: 485 KSELLNLLMLPNCIISQQGNKPVIGIVQDSLLGSFLLSQRNIFLDYSKFMLLLMQLQEWD 544

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
           G     +P P+I+KP  LWTGKQ+FS+ +     +R  ++ +  EKT             
Sbjct: 545 G----SIPIPSIIKPQTLWTGKQVFSLFLPKINFLRKCLSHSENEKT------------- 587

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
                + P D  V     +LISG + K ++G  +   +  +  +++G   TS  +++   
Sbjct: 588 ----NISPKDTRVMILGGQLISGMIDKRSVG-ASGGSIIHICWKEFGPKKTSNFISQFQT 642

Query: 557 LSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           +   W+   GFS+GI D +  KK +++    + S   E   V +   N+ +     G   
Sbjct: 643 IVNSWLLFEGFSVGIGDTIADKKTMNNIIKTIKSAKIEARQVTLLNINKSEENFL-GKIL 701

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
               E  I  ILN  R+ AG     SL   N+   M  CGSKGS INISQ++ACVGQQ+V
Sbjct: 702 KDDFENHINKILNSARDKAGSNAQKSLSNANNIKRMVDCGSKGSFINISQIIACVGQQNV 761

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R P GF  RSLPHF +    P  +GFV NS+ SGL   EFFFH+MGGREGL+DTA+K
Sbjct: 762 EGKRIPMGFNKRSLPHFSKDNYGPETRGFVQNSYISGLRPDEFFFHSMGGREGLIDTAIK 821

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF-D 794
           T++TGY+ RRL KA+E++ ++YD +VRN  G I++F YG+DGMD  N+E ++ +     D
Sbjct: 822 TSETGYIQRRLSKAMENVMVEYDFTVRNCEGNIIEFFYGEDGMDALNLENQNFDSTKLSD 881

Query: 795 R---LLMKVKATCPPAGQRYLSPQQVSEI 820
           R   ++ +     P  G  Y   ++VSE+
Sbjct: 882 RELEIVFRFNINSPLIGMAY-DGKEVSEL 909



 Score =  100 bits (248), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 3/145 (2%)

Query: 1097 VKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINE 1156
            +K N E   Y L  EG  L+ ++   GID  +  SN I E+ + LGIEA R  +I E+  
Sbjct: 1312 IKNNEE---YVLDTEGVDLRYILNYSGIDYTRCSSNDILEIYKILGIEAVRKILIQELRN 1368

Query: 1157 TMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASV 1216
             +   G  ++ RH+ LL D+MT +G+++ ITR GI + D   +   SFE+T + L+ A+ 
Sbjct: 1369 LISFDGSYVNSRHLSLLVDVMTHKGKLMSITRHGINRTDIGPIAKCSFEETIEVLYQAAA 1428

Query: 1217 NGRDDRIEGVSECIIMGIPMPLGTG 1241
             G  D ++GVS  I++G    LGTG
Sbjct: 1429 FGVCDNLKGVSGSILVGQVSSLGTG 1453



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 91/187 (48%), Gaps = 33/187 (17%)

Query: 790  PLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEK-------QLAAYGKESCS-------- 834
            P+N DR++   +   P      +SP ++ + ++K        L     E CS        
Sbjct: 950  PVNIDRIIKNAEKLFPQEKNCRISPIEIIDGLKKLENYCFDSLGPKKNEECSGFCNCCKC 1009

Query: 835  EAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCF 894
            E+ LN+   F    + KL  KI F +               +K S +    L V  + C 
Sbjct: 1010 ESRLNATLLFRIFLRSKLASKIIFFK---------------YKFSKVAF--LWVLNEIC- 1051

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            ++YR      G  +G I AQSIG+P TQMTL TFH+AGV++ N+T GVPR+KEIIN  + 
Sbjct: 1052 TQYRKSIASPGEMVGTISAQSIGQPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVLQT 1111

Query: 955  ISTPIIT 961
            + TP +T
Sbjct: 1112 VKTPSLT 1118


>gi|188532151|gb|ACD63087.1| RNA polymerase II largest subunit [Nicotiana tabacum]
          Length = 1010

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 305/746 (40%), Positives = 432/746 (57%), Gaps = 31/746 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D DC +L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+D
Sbjct: 131 LSAERVLSILKRVSDEDCLLLGLNPEYARPDWMILQALPIPPPPVRPSVMMDTSSRSEDD 190

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++      A       + LQ  +A Y ++D+ G P + Q + RP
Sbjct: 191 LTHQLAMIIRHNENLKRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRATQRSGRP 250

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDP + I ++ +P  +A  LTYPE V+
Sbjct: 251 IKSICSRLKSKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT 310

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRY--PDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
            +NIE+L++ ++ GP   PG    +Y   D   R+     +      L+ G  V+RHL D
Sbjct: 311 PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLND 370

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R
Sbjct: 371 GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 430

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E L LM V   + +P+    ++   QD L     IT++DTF ++  F  +  +  D   
Sbjct: 431 AEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 490

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
           +V  P PAILKP  LWTGKQ+F+++I    N+  Y          S K   T GD ++RI
Sbjct: 491 KV--PAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAW----HNDSEKGPITPGDTQVRI 544

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
           E              EL++G L K TLG      L  V+  + G  A    +     L  
Sbjct: 545 E------------KGELLTGTLCKKTLGTST-GSLIHVIWEEVGPDAARKFLGHTQWLVN 591

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
            W+  + FSIGI D        +K  + IS         IK   E +L+ +PG    ++ 
Sbjct: 592 YWLLQNAFSIGIGDTIADASTMEKINETISNAKSKVKELIKAAQEKQLEAEPGRTMMESF 651

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R
Sbjct: 652 ENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 711

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++T
Sbjct: 712 IPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 771

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL-----NFD 794
           GY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L      FD
Sbjct: 772 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKAKKSTFD 831

Query: 795 RLLMKVKATCPPAGQRYLSPQQVSEI 820
            L    +   P     Y+ P+ + ++
Sbjct: 832 DLY-AYEIDDPNWNPSYMLPEAIEDL 856


>gi|33326211|gb|AAQ08515.1| RNA polymerase II largest subunit [Zea mays]
          Length = 1009

 Score =  527 bits (1358), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 307/723 (42%), Positives = 432/723 (59%), Gaps = 34/723 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           IL+   VL + KR++D DC +L L+    RP+ +I+  + VPP  +RPSV+MD S  +E+
Sbjct: 129 ILSAERVLNVLKRISDEDCLLLGLNPKYARPDWMILQVLPVPPPPVRPSVMMDTSSRSED 188

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  II+ N +L+++      A       + LQ  +A Y ++D+ G P + Q + R
Sbjct: 189 DLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNDLPGQPRATQRSGR 248

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           P+     RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I E+ +P  +A  LTYPE V
Sbjct: 249 PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETV 308

Query: 261 SDHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRH 316
           + +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RH
Sbjct: 309 TPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLEL--GYKVERH 366

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           L DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ 
Sbjct: 367 LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 426

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           E R E L LM V   + +P++   ++   QD L     IT++DT  ++  F  +  +  D
Sbjct: 427 ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQD 486

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
              ++  P P ILKP  +WTGKQ+F+++I    N+  +     +E+    K   T GD  
Sbjct: 487 FDGKI--PAPTILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSEEE----KGFITPGDTM 540

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
           +RIE              EL+SG L K +LG G+   L  V+  + G  A    +     
Sbjct: 541 VRIE------------KGELLSGTLCKKSLGTGS-GSLIHVIWEEVGPDAARKFLGHTQW 587

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           L   W+  +GFSIGI D        +     IS+        IK+ +E +L+ +PG    
Sbjct: 588 LVNYWLLQNGFSIGIGDTIADASTMETINDTISKAKNAVKELIKKAHEKQLEAEPGRTMM 647

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           ++ E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V 
Sbjct: 648 ESFENRVNQVLNKARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 707

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT
Sbjct: 708 GKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 767

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           ++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +       D L
Sbjct: 768 SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK-----LDSL 822

Query: 797 LMK 799
            MK
Sbjct: 823 KMK 825


>gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga
           brevicollis]
          Length = 1743

 Score =  527 bits (1357), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 291/704 (41%), Positives = 421/704 (59%), Gaps = 22/704 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL  F+ ++D DC ++       RP+ +II  + VPP+A+RPSV +  S  + +D+T +L
Sbjct: 140 VLKCFRGISDEDCRIIGFDPVYTRPDFMIIEVLPVPPLAVRPSVELGESGHSADDLTYQL 199

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFV 206
             II+TN SLQ+ +    +        E +Q +VA  +++++  +P S Q   RP+    
Sbjct: 200 GDIIKTNISLQENIANGATPHMIEECVEYIQFKVATLMDNNLPHMPQSQQRSGRPIKAIS 259

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
           QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  LT PERV++ N+ 
Sbjct: 260 QRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLAIDQVGVPRTVAAKLTVPERVTNFNLN 319

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           K+ Q + NGP ++PGAR I   DGT R+     R+     L+ G IV+RHL+D DV++FN
Sbjct: 320 KMNQYVANGPTQHPGARYIIQEDGT-RIDLHIARSHSDRTLQPGFIVERHLQDNDVIIFN 378

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQP+LH+MS+M HR +++PW T R N SV +PYNADFDGDEMN+HVPQ+  +R E   +M
Sbjct: 379 RQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSLGSRAEIEEIM 438

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTP 446
            V  N+ TP++   ++   QD LT +  +T +D F +R     +  +M +   ++  P P
Sbjct: 439 MVHKNILTPQSNRPVMGIIQDTLTVARRMTFRDCFIEREQLMHLLMWMPNWDGKI--PVP 496

Query: 447 AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPND 506
           AI+ P ELWTGKQL S++I         +NL  K  T+ +K+ R           +  +D
Sbjct: 497 AIVAPKELWTGKQLVSMIIP------RRINLEGKHSTHEDKVDRA-------TPYLTVHD 543

Query: 507 GFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHG 566
             V      LISG L K+ LG     G+   +  ++G          +  +   W+  HG
Sbjct: 544 TKVIISKGVLISGILCKSMLG-AKGGGVIHAITVEHGLEEARQFYGNIQTVINNWLLIHG 602

Query: 567 FSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDI 626
            SIGI D    ++ + +  +L  E     +  I +     ++ KPG    +T E  +  +
Sbjct: 603 HSIGIGDAVADQDTNKRIEELTQEATRSVDELITKAQADDIKPKPGNTVRETFEVEVNTV 662

Query: 627 LNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFID 686
           LN +   AGK+   SL   N+   MS  GSKG PINISQ++ACVGQQ+V G+R P GF  
Sbjct: 663 LNDMVNKAGKSAQNSLSIHNNFKAMSTAGSKGGPINISQIIACVGQQNVEGKRIPFGFKY 722

Query: 687 RSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRL 746
           R+LPHF +    P ++GFV NS++ GLSA E FFH MGGREGL+DTAVKTA+TGY+ RRL
Sbjct: 723 RTLPHFVKDDYGPDSRGFVFNSYFKGLSAQEMFFHAMGGREGLIDTAVKTAETGYIQRRL 782

Query: 747 IKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEP 790
           +K++E L + YD S+RN+ G ++Q  YG+DGMD A +E K G P
Sbjct: 783 VKSMEGLRLNYDGSIRNSNGDLIQLCYGEDGMDGACLE-KQGLP 825



 Score =  170 bits (430), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 128/414 (30%), Positives = 202/414 (48%), Gaps = 58/414 (14%)

Query: 896  RYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRI 955
            R+   + + G  +GA+ AQS+GEP TQMTL TFH AGV++ N+T GVPR+KEIIN +K+ 
Sbjct: 993  RFMQAQAQPGEMVGALAAQSLGEPATQMTLNTFHLAGVSAKNVTLGVPRLKEIINVSKKP 1052

Query: 956  STP---IITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
             TP   +   E +  D   A +V+   IE + L  +  S  I       + VI  D E +
Sbjct: 1053 KTPSMVLFIGEDKYQDRNTAMKVLFS-IEHSTLKTIIHSSSIYYDPDEMNSVIPEDREFL 1111

Query: 1013 QDAHLC--------------------IN---------ADIVKESI-----VQTPKIKLKQ 1038
            ++  +                     IN         A ++K ++      +   + +  
Sbjct: 1112 ENYDIGDFDMNKWHRWVLRWELSRREINTRRILPENVAKLIKRAMGAVQDTERDTVMVHF 1171

Query: 1039 QHIKVLDFRKLEIFPPVDKSKIHFELYS-------LKNVLPMVIVKGIKTVERVVIAEKE 1091
            Q   + D   + I  P DKS+    L            +L  + ++GI  + R  +   +
Sbjct: 1172 QQGNIEDHTVMRIRLPRDKSEADDSLGPDAYLRLLEDRILHSITLQGIPDITRGYLVTGD 1231

Query: 1092 -----KEKRKVKENGE-KKKYRLLVE--GTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
                 K++  + E GE K + + LVE  G+ +Q+V     +D  ++ SN I E+  T GI
Sbjct: 1232 SKQPGKQRIFINEEGEFKPQDQFLVETDGSSIQSVFAQRYVDQERSTSNDIVEIFSTFGI 1291

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            E AR  I  E+   +   G  ++ RH+ LL D+MT +G ++ ITR G+ + +  VLM AS
Sbjct: 1292 EGARKAIEAEMYNVISFGGSYVNARHLSLLCDIMTTKGYLMAITRHGVNRQNTGVLMKAS 1351

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI-----RQRDAVP 1252
            FE+T D L  A+ +G  D ++GVSE I++G  +P GTG   +     R + AVP
Sbjct: 1352 FEETVDILLEAAAHGETDYLKGVSENIMLGQVIPGGTGCFDLLLDQDRLQHAVP 1405


>gi|328849370|gb|EGF98552.1| hypothetical protein MELLADRAFT_50989 [Melampsora larici-populina
           98AG31]
          Length = 1786

 Score =  527 bits (1357), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 308/716 (43%), Positives = 435/716 (60%), Gaps = 40/716 (5%)

Query: 90  NVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQS-NENDITE 145
           + L + +R++D D  +L L     RPE +++T + +PP  +RPS+ MDG  S  E+D+T 
Sbjct: 226 DALSILRRISDEDLRILGLHAEEARPEWMVLTVLPIPPPPVRPSIAMDGGTSRGEDDLTY 285

Query: 146 RLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQ-VARPLS 203
           +L  +I+ N ++++   E   A   +  +ETL Q  +A Y+++D+ G P ++Q   RP+ 
Sbjct: 286 KLAEVIKANQAVRKFESEGAPA-HVITEFETLLQWHIATYMDNDLPGQPQALQKSGRPVK 344

Query: 204 GFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDH 263
               RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ +V +P  +AR LTYPERV+ +
Sbjct: 345 SLRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPY 404

Query: 264 NIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVV 323
           NI  L++ ++NGP +YPGAR +    G    L  ++  +    L+ G IV+RHL+DGD V
Sbjct: 405 NITYLQELVRNGPTEYPGARYVVRDTGDRIDL--RYNKRADTFLQYGWIVERHLKDGDYV 462

Query: 324 LFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAL 383
           LFNRQPSLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMN+HVPQ+EE R E  
Sbjct: 463 LFNRQPSLHKMSMMSHRIKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELA 522

Query: 384 LLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDL 443
            +  V  N+ +P+  + ++   QD L      T +D F DR     +  ++  G D V +
Sbjct: 523 QIAWVPRNIVSPQANKPVMGIVQDTLCGVRKFTLRDCFMDRDFVQNILLWV-PGWDGV-V 580

Query: 444 PTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMC 503
           P PAILKP  LWTGKQ+ S+ I    N                 L R   D+E +     
Sbjct: 581 PPPAILKPKPLWTGKQILSMCIPKGIN-----------------LFR---DDENQTSIPV 620

Query: 504 PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIG 563
            + G ++  + E+I G + K T+G  ++ G+  V+ R+ G   T G  + +  +   W+ 
Sbjct: 621 ADKG-MWIEDGEIIYGVVDKKTVG-ASQGGIIHVIFREKGPEVTRGLFSGIQMVVNYWLL 678

Query: 564 NHGFSIGIDDVQPKKELSDKKGKLISE-NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAV 622
           +HGFSIGI D  P K   +   K ISE   EV NV I    E KLQ +PG    ++ EA 
Sbjct: 679 HHGFSIGIGDTVPDKGTMETITKFISEAKLEVANV-ISMAQEDKLQPEPGMTIRESFEAK 737

Query: 623 ITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPN 682
           +   LN  R++AG++   SL   N+   M   GSKGS INISQM ACVGQQSV G+R P 
Sbjct: 738 VNRALNMARDNAGRSAEQSLKDDNNVKQMVTAGSKGSFINISQMSACVGQQSVEGKRIPY 797

Query: 683 GFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYM 742
           GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+TGY+
Sbjct: 798 GFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 857

Query: 743 SRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
            RRL+KALED+ + YD +VRN+ G IVQF+YG+DG+D     G + E  NFD + +
Sbjct: 858 QRRLVKALEDVMVAYDGTVRNSLGDIVQFVYGEDGVD-----GGTVEYQNFDSVRL 908



 Score =  192 bits (489), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 130/402 (32%), Positives = 206/402 (51%), Gaps = 59/402 (14%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+       G   G + AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEIIN A  
Sbjct: 1071 ARFNQSLAAPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVALN 1130

Query: 955  ISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T  L  E +++  AA+ ++  +  T L  V  S +I+      S V+  D++ +
Sbjct: 1131 IKTPSLTVYLNEELSNDIEAAKDIQTELAHTNLKTVTASTQIIYDPDPKSTVVEEDVDFV 1190

Query: 1013 QDAHLCINADIVKESI-VQTPK-IKLKQQHIKVLD---------FRKLEIFPPVDKSKIH 1061
             DA   +  D V+  I  Q+P  ++L+    K+LD          R  E+F    KS + 
Sbjct: 1191 -DAFFAVPDDEVESQIDRQSPWLLRLELDRAKMLDKKLSMSFVASRIAEVF----KSDL- 1244

Query: 1062 FELYSLKNVLPMVI-----------------------------------VKGIKTVERVV 1086
            F ++S  N   ++I                                   ++G++ ++RV 
Sbjct: 1245 FIIWSEDNAEKLIIRCRAMQSGEDKDEDDDQVEEDVFLREIEQMLGSISLRGVEGIQRVF 1304

Query: 1087 IAEKEKEKRKVKENGE---KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
            + +  +    + +NGE   K ++ L  +G  L+ V+  +G+D  +T SN+  E+   LGI
Sbjct: 1305 MLQHNRN--YICQNGEFDRKTEWVLETDGINLKKVLCVDGVDPVRTVSNNCVEIMTVLGI 1362

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            EAAR  ++ E+   ++  G  ++ RH+ LL DLMT RG ++ ITR GI + D   LM  S
Sbjct: 1363 EAARASVLKELRNVIEFDGSYVNYRHLALLCDLMTNRGSLMAITRHGINRADTGPLMRCS 1422

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            FE+T + L +A+  G  D   GV+E +++G   P+GTG   +
Sbjct: 1423 FEETVEILMDAAATGEKDHCTGVAENVLLGQLAPMGTGAFDV 1464


>gi|357144975|ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
           [Brachypodium distachyon]
          Length = 1862

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 307/723 (42%), Positives = 429/723 (59%), Gaps = 34/723 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           IL+   VL + KR++D DC +L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+
Sbjct: 212 ILSAERVLNVLKRISDEDCLLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTSSRSED 271

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VAR 200
           D+T +L  II+ N +L+++      A       + LQ  +A Y ++D+ G P + Q   R
Sbjct: 272 DLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNDLPGQPRATQRSGR 331

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           P+     RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I E+ +P  +A  LTYPE V
Sbjct: 332 PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETV 391

Query: 261 SDHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRH 316
           + +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RH
Sbjct: 392 TPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLEL--GYKVERH 449

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           L DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ 
Sbjct: 450 LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 509

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           E R E L LM V   + +P+    ++   QD L     IT++DT  ++  F  +  +  D
Sbjct: 510 ETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWED 569

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
              +V  P PAILKP  +WTGKQ+F+++I    N+   +  +       +  I T GD  
Sbjct: 570 FDGKV--PAPAILKPRPIWTGKQVFNLIIPKLINL---IRFSAWHAESESGFI-TPGDTM 623

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
           +RIE              EL+SG L K TLG G    L  V+  + G  A    +     
Sbjct: 624 VRIE------------KGELLSGTLCKKTLGTGTG-SLIHVIWEEVGPDAARKFLGHTQW 670

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           L   W+  +GFSIGI D        +K  + IS+        IK+  +  L+ +PG    
Sbjct: 671 LVNYWLLQNGFSIGIGDTIADASTMEKINETISKAKSEVTELIKQAQDKLLEPEPGRTMM 730

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           ++ E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V 
Sbjct: 731 ESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 790

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF+DR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT
Sbjct: 791 GKRIPFGFVDRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 850

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           ++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +       D L
Sbjct: 851 SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQ-----KLDSL 905

Query: 797 LMK 799
            MK
Sbjct: 906 KMK 908



 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/408 (31%), Positives = 206/408 (50%), Gaps = 51/408 (12%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T++  E  I    SR+    V  G  IG + AQSIGEP TQMTL TFH+AGV++ N+T 
Sbjct: 1057 LTKESFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1116

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR++EIIN AK+I TP ++  L  E +  +  A+ V+  +E T L  V  + +I    
Sbjct: 1117 GVPRLREIINVAKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDP 1176

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKS 1058
                 +I  DM+ ++  +   + DI  + I  +P +   + + +++  +KL +    +K 
Sbjct: 1177 DPLGTIIEEDMDFVKSYYEMPDEDIDPDKI--SPWLLRIELNREMMVDKKLSMADIAEKI 1234

Query: 1059 KIHFE-----LYSLKNVLPMVI-------------------------------------V 1076
               F+     +++  N   +++                                     +
Sbjct: 1235 NHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMAL 1294

Query: 1077 KGIKTVERVVIAEKEKEKRKVKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNH 1133
            +GI  + +V I  K  +  K  EN   K   ++ L  EG  L AVM  E +D  +T SNH
Sbjct: 1295 RGIPDINKVFI--KYGKINKFDENDGFKPDNEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1352

Query: 1134 IFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQK 1193
            + EV + LGIEA R  ++DE+   +   G  ++ RH+ +L D MT+RG ++ ITR GI +
Sbjct: 1353 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1412

Query: 1194 MDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             D   LM  SFE+T D L +A+V    D + GV+E I++G   P+GTG
Sbjct: 1413 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTG 1460


>gi|452983085|gb|EME82843.1| hypothetical protein MYCFIDRAFT_58269 [Pseudocercospora fijiensis
           CIRAD86]
          Length = 1753

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 292/722 (40%), Positives = 427/722 (59%), Gaps = 43/722 (5%)

Query: 81  VATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQ 137
           V   I+ P  VL +F  +++ D   L L+    RPE +++T + VPP A+RPS+ +DG+ 
Sbjct: 207 VEKKIITPQEVLRVFGLISEDDLLRLGLNVDYARPEWMVLTVLPVPPPAVRPSISVDGTS 266

Query: 138 S---NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPF 194
               +E+D+T +L  II+ N+++++   E +    +      LQ  VA Y+++D+ G+P 
Sbjct: 267 QGMRSEDDLTYKLSDIIRANSNVRRAEQEGSPQHITDEFTSLLQYHVATYMDNDIAGMPK 326

Query: 195 SMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           S+Q   RPL     RLK K+GR RGNL GKRV+++ RTVI+ DPNL + +V  P   ARI
Sbjct: 327 SIQKSGRPLKAIRARLKSKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGCPRSTARI 386

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIV 313
           LT+PERV+ +NI KL++ ++NGP+++PGA+ I   DG+ R+     +    ++L+ G IV
Sbjct: 387 LTFPERVTLYNIHKLQELVRNGPNEHPGAKHIIREDGS-RIDLRYHKRAGEIQLQLGWIV 445

Query: 314 DRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVP 373
           +RH+ DGD ++FNRQPSLH+ S+M HR ++MP+ T R N SV +PYNADFDGDEMNMHVP
Sbjct: 446 ERHIVDGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 505

Query: 374 QTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMC 431
           Q  E R E   L  V +N+ +P+    L+   QD +   +++TR+DT   Y++    LM 
Sbjct: 506 QGHETRAEVANLCAVPHNIVSPQKNGPLMGIVQDTMAGIWMMTRRDTMMDYEQVMNILMW 565

Query: 432 CYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRT 491
               DG+    +PTPAILKP   WTGKQ+ S        + + + L +  K+    +   
Sbjct: 566 VPGWDGV----IPTPAILKPSPRWTGKQIIS--------LGLPLGLNIFRKSEEGDIPLL 613

Query: 492 EGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCM 551
           E +E + I+            N EL+ G+  K  +G  +  G+   +  D G  AT    
Sbjct: 614 EKEEPVLIQ------------NGELVWGRFTKKLVG-ASGGGVVHYIFNDKGPDATVEFF 660

Query: 552 NRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNE----GKL 607
           N   ++   W+ +HGFS+GI D  P  +L  K    I E       +++EY        +
Sbjct: 661 NAAQRICCYWLLHHGFSVGIGDTVPDADLVAK----IEEQVVKYKTQVEEYMSEVQIDNM 716

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
           +  PG    +T E      L+  R  AG      +   N+   M + GSKGS  N+SQM 
Sbjct: 717 EASPGMTVRETFENKTKTALDNARNGAGDVAYKGMNACNNVGTMVKSGSKGSTTNVSQMT 776

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           A VGQQS+ G+R P GF DR LPHFP+    PA++GFV NS+  GL+  EFFFH MGGRE
Sbjct: 777 AAVGQQSLEGKRLPFGFKDRVLPHFPKDDYSPASRGFVENSYLRGLTPQEFFFHAMGGRE 836

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GL+DTAVKTA+TGY+ RRL+KALE++ I+YD +VRN+ G I+QF YG+DG+D   +E ++
Sbjct: 837 GLIDTAVKTAETGYIQRRLVKALEEIMIKYDGTVRNSLGDILQFTYGEDGLDATYIEAQN 896

Query: 788 GE 789
            E
Sbjct: 897 LE 898



 Score =  176 bits (447), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 193/393 (49%), Gaps = 46/393 (11%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFH AGV +   T+GVPR+KEI+N A  
Sbjct: 1068 NRFLRALVSPGEMVGVLAAQSIGEPATQMTLNTFHLAGVTAKTTTKGVPRLKEILNVADN 1127

Query: 955  ISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +      E    +++A++++ ++E T L  V  + +I     + S VI  D + +
Sbjct: 1128 IKTPNMKVYQLPEARAAQDSAKLLRSKVEFTSLRGVTDAAEIYYDPDIESTVIDEDRDMV 1187

Query: 1013 Q-------------------------------DAHLCINADIVKESIVQTPKIKL----- 1036
            +                               D  L +     K   V T  I +     
Sbjct: 1188 ESYFIIPEEGADSPDAQSRWLLRFVLGRRQLLDKGLTVTQVAQKIKEVYTSDIAVIFSDD 1247

Query: 1037 --KQQHIKVLDFRKLEIFPPVDKSKIHFELYSL-KNVLPMVIVKGIKTVERVVIAEK--- 1090
              +Q  ++V    + +     D+S     L  L +++L  VI++G+  V RV +++    
Sbjct: 1248 NAEQTVVRVRMLNRGDKDEEGDESSEDDTLKQLAEHMLDNVILRGVNGVRRVFVSKANQI 1307

Query: 1091 -EKEKRKVKENGEKK-KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARI 1148
             EK    + + GE+  ++ L  +G  LQ V+  +G+D  +T  NH     +  GIEA R 
Sbjct: 1308 IEKPNGAMTQGGEESVEWYLDTDGVNLQKVLAVDGVDSARTTCNHFQSTMKVFGIEAVRA 1367

Query: 1149 CIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTA 1208
             ++ E+ + +   G  ++ RHM +L D+M  RGE++ +TR GI + D   LM  SFE+T 
Sbjct: 1368 SLMAEMKDVLTNDGSYVNHRHMAILCDVMCARGELMAVTRHGINRSDTGALMRCSFEETV 1427

Query: 1209 DHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            + LF+A+ +G  D   GVSE II+G   P GTG
Sbjct: 1428 EILFDAASSGELDDCRGVSENIILGQLAPSGTG 1460


>gi|255941856|ref|XP_002561697.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586320|emb|CAP94069.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1733

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 293/715 (40%), Positives = 422/715 (59%), Gaps = 40/715 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSN-- 139
           ++ P   L +F+ ++  D  ++ LS    RPE +I+T + VPP  +RPSV+M G+ S   
Sbjct: 210 VITPTMALNIFRNISVEDVRIMGLSNDYARPEWMILTVLPVPPPTVRPSVVM-GTTSGAR 268

Query: 140 -ENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVP 193
            E+D+T +L  I++ N ++Q+   E         F+SL     LQ  +A Y+++D+ G P
Sbjct: 269 GEDDLTYKLAEIVRANQNVQRCEQEGAPEHVIREFESL-----LQYHIATYMDNDIAGQP 323

Query: 194 FSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMAR 252
            +MQ   RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL++ EV +P   AR
Sbjct: 324 TAMQKGNRPVKALRSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLRLDEVGVPYSTAR 383

Query: 253 ILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCI 312
           ILTYPE V+ +NIEKL++ + NGP+ +PGAR I   +G  R+     +   A +L  G  
Sbjct: 384 ILTYPEVVTPYNIEKLQRLVANGPNLHPGARYIVRDNG-ERIDLRHAKRAGAQQLLYGWK 442

Query: 313 VDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHV 372
           V+RHL+DGD +LFNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HV
Sbjct: 443 VERHLDDGDYILFNRQPSLHKESMMGHRVRVMPFSTFRMNLSVTSPYNADFDGDEMNLHV 502

Query: 373 PQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCC 432
           PQ EE+R E   L  V  N+ +P+    L+   QD L   + I R+DTF  +     +  
Sbjct: 503 PQGEESRAELAELTLVPKNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKDQVMNLML 562

Query: 433 YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
           ++ D    +  P PAI+KP   WTGKQ+ S+      N                 L+R +
Sbjct: 563 WVPDWDGAI--PPPAIIKPRPRWTGKQMISMAFPSGLN-----------------LLRVD 603

Query: 493 GDEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCM 551
            D     E   P NDG +     +L+ G L K T+G  +  G+   +  +YG        
Sbjct: 604 KDGSPLSEKFSPLNDGGLLIHGGQLMYGMLSKKTVG-ASGGGVIHTIFNEYGPDTCVKFF 662

Query: 552 NRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
                +   W+ ++GFSIGI D  P +   +K  + +    +          E  L+  P
Sbjct: 663 TGAQTIVGYWLLHNGFSIGIGDTIPDQLTINKIEEAVRNRKQEVEEITASATENTLEALP 722

Query: 612 GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
           G +  +T E+ ++  LN  R++AG A   SL   N+ + M++ GSKGS INISQM A VG
Sbjct: 723 GMNVRETFESKVSRALNNARDEAGDATEKSLKDLNNAIQMARSGSKGSAINISQMTALVG 782

Query: 672 QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
           QQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+D
Sbjct: 783 QQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLID 842

Query: 732 TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           TAVKTA+TGY+ R+L+KALE++ ++YD +VRN+ G I+QF+YG+DG+D A++E +
Sbjct: 843 TAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAHIENQ 897



 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 130/401 (32%), Positives = 199/401 (49%), Gaps = 53/401 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+       G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A  
Sbjct: 1067 SRFARAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATN 1126

Query: 955  ISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
            I TP +T   E    +D E  A++++  +E T L  V +S +I     + S VI  D + 
Sbjct: 1127 IKTPSMTVYQEGVKTHDKE-GAKLLRSLVEHTSLRSVTESTEIYYDPDIQSTVIENDRDM 1185

Query: 1012 IQDAHLCI--NAD-------------------IVKESIVQTPKIKLKQQHIK-------- 1042
            ++   +    NAD                   + K   VQ    ++KQ + +        
Sbjct: 1186 VESYFIIPEDNADDASQQSKWLLRIVLSRRSLLDKGLTVQDVATRIKQAYPRDIAVIFSD 1245

Query: 1043 ------VLDFRKLEIFPPVDKSKIHFELYSLK---NVLPMVIVKGIKTVERVVIAEKEKE 1093
                  V+  R+++ +   +   I +++   K   ++L  + ++G+  V+R  I   EK 
Sbjct: 1246 NNADEQVIRIRQVQDYKDDEDEDIEYDVTLKKLEQHLLDTLTLRGVPGVDRAFI--NEKS 1303

Query: 1094 KRKVKENGEK---------KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
            K +V E+G           K++ L   G+ L AV+   G+D  +T SN   E+ +  GIE
Sbjct: 1304 KVRVVEDGTLHTSKSDPLCKEWVLETSGSSLAAVLAIPGVDASRTYSNQFIEIFEVFGIE 1363

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  ++ E+   +   G  ++ RH+ LL D+MT RG +  +TR GI + D   LM  SF
Sbjct: 1364 AARTAVLRELTLVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRCSF 1423

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+  G  D   GVSE +I+G   P GTG   +
Sbjct: 1424 EETVEILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDV 1464


>gi|425770649|gb|EKV09117.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
 gi|425771955|gb|EKV10383.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
          Length = 1733

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 292/714 (40%), Positives = 420/714 (58%), Gaps = 38/714 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS--N 139
           ++ P   L +F+ ++  D  ++ LS    RPE +I+T + VPP  +RPSV+M  +     
Sbjct: 210 VITPTMALNIFRNISVEDVRIMGLSNDYARPEWMILTVLPVPPPTVRPSVVMGATSGARG 269

Query: 140 ENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVPF 194
           E+D+T +L  I++ N ++Q+   E         F+SL     LQ  +A Y+++D+ G P 
Sbjct: 270 EDDLTYKLAEIVRANQNVQRCEQEGAPEHVIREFESL-----LQYHIATYMDNDIAGQPT 324

Query: 195 SMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           +MQ   RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL++ EV +P   ARI
Sbjct: 325 AMQKGNRPVKALRSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLRLDEVGVPYSTARI 384

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIV 313
           LTYPE V+  NIEKL++ I NGP+ +PGAR I   +G  R+     +   A +L  G  V
Sbjct: 385 LTYPEVVTPWNIEKLQKLIANGPNIHPGARYIVRDNG-ERIDLRHAKRAGAQQLLYGWKV 443

Query: 314 DRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVP 373
           +RHL++GD +LFNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVP
Sbjct: 444 ERHLDNGDYILFNRQPSLHKESMMGHRVRVMPFSTFRMNLSVTSPYNADFDGDEMNLHVP 503

Query: 374 QTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCY 433
           Q EEAR E   L  V  N+ +P+    L+   QD L   + I R+DTF  +     +  +
Sbjct: 504 QGEEARAELAELTLVPKNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKDQVMNLMLW 563

Query: 434 MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
           + D    +  P PAILKP   WTGKQ+ S+      N                 L+R + 
Sbjct: 564 VPDWDGAI--PPPAILKPRPRWTGKQMISMAFPSGLN-----------------LLRVDK 604

Query: 494 DEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
           D     E   P +DG +     +L+ G L K T+G  +  G+   +  +YG        +
Sbjct: 605 DGSPLAEKFSPLSDGGLLIHGGQLMYGMLSKKTVG-ASGGGVIHTIFNEYGPDTCVKFFS 663

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
               +   W+ ++GFSIGI D  P +   +K  + +    +          E  L+  PG
Sbjct: 664 GAQTIVGYWLLHNGFSIGIGDTIPDQHTINKIEEAVRNRKQEVEEITASATENTLEALPG 723

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
            +  +T E+ ++  LN  R++AG A   SL   N+ + M++ GSKGS INISQM A VGQ
Sbjct: 724 MNVRETFESKVSRALNNARDEAGDATEKSLKDLNNAIQMARSGSKGSAINISQMTALVGQ 783

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           QSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DT
Sbjct: 784 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 843

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           AVKTA+TGY+ R+L+KALE++ ++YD +VRN+ G I+QF+YG+DG+D A++E +
Sbjct: 844 AVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAHIENQ 897



 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/401 (32%), Positives = 197/401 (49%), Gaps = 53/401 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+       G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A  
Sbjct: 1067 SRFARAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATN 1126

Query: 955  ISTPIITAELE--CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T   E     ++  A++++  +E T L  V +S +I     + S VI  D + +
Sbjct: 1127 IKTPSMTVYQEGMMTHDKEGAKLLRSLVEHTSLRSVTESTEIYYDPDIQSTVIENDRDMV 1186

Query: 1013 QDAHLCI--NADIVKES-------------------IVQTPKIKLKQQHIK--------- 1042
            +   +    NAD V +                     VQ    ++KQ + +         
Sbjct: 1187 ESYFIIPEDNADDVSQQSKWLLRIVLSRRSLLDKGLTVQDVATRIKQAYPRDIAVIFSDN 1246

Query: 1043 -----VLDFRKLEIFPPVDKSKIHFELYSLK----NVLPMVIVKGIKTVERVVIAEKEKE 1093
                 V+  R+++ +   D  +      +LK    ++L  + ++G+  V+R  I   EK 
Sbjct: 1247 NADEQVIRIRQVQDYK-DDDDEDVEYDVTLKKLEQHLLDTLTLRGVPGVDRAFI--NEKS 1303

Query: 1094 KRKVKENGEK---------KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
            K +V E+G           K++ L   G+ L AV+   G+D  +T SN   E+ +  GIE
Sbjct: 1304 KVRVIEDGTLHTSKSDPLCKEWVLETSGSSLAAVLTIPGVDASRTYSNQFIEIFEVFGIE 1363

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  ++ E+   +   G  ++ RH+ LL D+MT RG +  +TR GI + D   LM  SF
Sbjct: 1364 AARTAVLRELTLVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRCSF 1423

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+  G  D   GVSE +I+G   P GTG   +
Sbjct: 1424 EETVEILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDV 1464


>gi|33326213|gb|AAQ08516.1| RNA polymerase II largest subunit [Magnolia x soulangeana]
          Length = 1010

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 304/722 (42%), Positives = 428/722 (59%), Gaps = 34/722 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D DC +L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+D
Sbjct: 131 LSAERVLSVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDD 190

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++      A       + LQ  +A Y ++++ G P + Q + RP
Sbjct: 191 LTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 250

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  LTYPE V+
Sbjct: 251 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVT 310

Query: 262 DHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHL 317
            +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RHL
Sbjct: 311 PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL--GYKVERHL 368

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E
Sbjct: 369 NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 428

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
            R E L LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D 
Sbjct: 429 TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 488

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
             ++  P P ILKP  LWTGKQ+F+++I    N+   +  +          I T GD ++
Sbjct: 489 DGKI--PAPTILKPRPLWTGKQVFNLIIPKQINL---IRTSAWHSEAETGFI-TPGDTQV 542

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
           RIE              EL++G L K TLG      L  V+  + G  A    +     L
Sbjct: 543 RIE------------RGELLAGTLCKKTLGTST-GSLIHVIWEEVGPDAARKFLGHTQWL 589

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
              W+  +GFSIGI D        +K  + IS+        IK   E +L+ +PG    +
Sbjct: 590 VNYWLLQNGFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMME 649

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           + E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G
Sbjct: 650 SFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 709

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT+
Sbjct: 710 KRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 769

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +       D L 
Sbjct: 770 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK-----LDSLK 824

Query: 798 MK 799
           MK
Sbjct: 825 MK 826


>gi|409193803|gb|AFV31135.1| RNA polymerase II largest subunit [Amoeboaphelidium protococcarum]
          Length = 1767

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 302/748 (40%), Positives = 447/748 (59%), Gaps = 30/748 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           I N   V  +FKR++D DC  L L     RP+ ++I+ + VPP  +RPS+ +DG+   E+
Sbjct: 208 IFNGHKVYNIFKRISDDDCRRLGLDPEWARPDWMLISVLPVPPPPVRPSIQVDGASRGED 267

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA- 199
           D+T +L  II+ N +L+  + ++ +    +A +E L Q  V  Y+N+DV G+P + Q + 
Sbjct: 268 DLTYKLADIIKANQNLKNHVDDSPAHI--IAEYEALLQYHVVTYMNNDVSGIPQATQKSG 325

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPN+ + EV +P  +A+ LT+PE 
Sbjct: 326 RPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISLDEVGVPRTIAKTLTFPEI 385

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+  N ++L++ + NGP+++PGAR +   +G  R+   +    + ++L  G  V+RH+ D
Sbjct: 386 VTPFNFQQLQEAVDNGPNEHPGARYVIRQNGD-RIDLSR-AGAIELQLNVGDKVERHIRD 443

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+VLFNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+ E +
Sbjct: 444 GDIVLFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETK 503

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   +  V   + +P+    ++   QD L      T++D+F  +     +C ++ D   
Sbjct: 504 AELSEICMVPRQIVSPQANRPVMGIVQDTLCGVRKFTKRDSFLTKEMVMSLCMWVRDWDG 563

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
           +  LP PAI+KPV LWTGKQ+FS++I P  NM  Y         +S        D     
Sbjct: 564 Q--LPQPAIIKPVPLWTGKQIFSLIIPPGTNMIGY---------HSQHPDNESSD----- 607

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
             + P D  V   + EL+ G + K T+G  +++ L  V+ +++G   T    +    +  
Sbjct: 608 --ISPGDTKVVIYDGELVCGIICKKTVGT-SQNSLIHVIWKEHGPEKTRNFFDGCQAVVN 664

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
            W+ ++GFSIGI D     +        IS         I + +   LQ  PG    ++ 
Sbjct: 665 NWLFSYGFSIGIGDTIADAQTMQVVATTISNAKNKVTEYISQAHRNVLQPSPGMTIQESF 724

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E+ +   LNR R+ AG +   SL   N+   M   GSKGS INISQM ACVGQQ+V GRR
Sbjct: 725 ESRVNQELNRARDIAGASAQKSLNDANNVKQMVVAGSKGSFINISQMTACVGQQNVEGRR 784

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GF  R+LPHF +  + P ++GFV NS+  GL+ +E FFH MGGREGL+DTAVKTA+T
Sbjct: 785 IPFGFKYRTLPHFTKDDQSPESRGFVENSYLRGLTPSELFFHAMGGREGLIDTAVKTAET 844

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 799
           GY+ RRL+KALED+S+ YD SVRNA G ++QF YG+DGMD  +ME ++ + L  +    K
Sbjct: 845 GYIQRRLVKALEDVSVGYDCSVRNALGQVLQFAYGEDGMDGTSMERQTLDSLRLNEDKFK 904

Query: 800 VKATCPPAGQRY-LSPQQVS-EIVEKQL 825
           +K     +  +Y LSP+ V  EI+++ +
Sbjct: 905 MKYKIDVSDSKYQLSPKTVKPEILQEMV 932



 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 127/391 (32%), Positives = 202/391 (51%), Gaps = 40/391 (10%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++    V     +G I AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEIIN A+ 
Sbjct: 1064 SKFHQSMVAPNEMVGTIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVARN 1123

Query: 955  ISTPIITAELECNDNE--NAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP  T  L+ +  +    A+ V+  IE T L +VA   +I     + +  I  D +T+
Sbjct: 1124 NKTPSTTIYLKGDYAKLPQKAKEVQAAIEYTTLRKVADRTEIWYDPDIENTRIVEDEDTV 1183

Query: 1013 QDAH-LCINADIV------------------KESIVQTPKIKLKQQH------------- 1040
               + L ++ D                    KE+  Q    +LK++              
Sbjct: 1184 LAYYSLMVDEDFSRYSPWVLRIVLDRRMMLDKETKPQLIVSRLKEEFQNDLDICSSDENA 1243

Query: 1041 -IKVLDFRKLEIFPPVDKSKIHFELYSLK----NVLPMVIVKGIKTVERVVIAEKEKEKR 1095
             + V+  R L     VD+  +  E   L+    ++L  + ++GI+ + RV + EK+    
Sbjct: 1244 PVPVIRIRILRNEEDVDQDALDEEDTILRKLEAHILNQIPLRGIEGINRVFMVEKKNVAL 1303

Query: 1096 KVKENGEK-KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEI 1154
              + + E+  ++ L  +G  L+ VM  + +D  +T SN+I E+ +TLGIEA R  ++ E+
Sbjct: 1304 NDQGDYEQFSEWVLETDGINLKNVMTVDNVDAGRTYSNNIVEITETLGIEAGRAALLKEL 1363

Query: 1155 NETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA 1214
               ++  G  ++ RH+ +L D+MT  G ++ ITR GI + + S L  +SFE+T + L  A
Sbjct: 1364 RNVIEFDGSYVNYRHLSMLCDVMTKHGILMAITRHGINRAETSALARSSFEETVEILMEA 1423

Query: 1215 SVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            +     D+ +GV+E IIMG   PLGTG  K+
Sbjct: 1424 AACAELDQCQGVAENIIMGQVAPLGTGNFKV 1454


>gi|397135924|gb|AFO11457.1| RNA polymerase I, partial [Peterozyma toletana]
          Length = 870

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 289/714 (40%), Positives = 423/714 (59%), Gaps = 43/714 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  +L +FK ++  DC  L  SE   RPE +IIT + VPP A+RPSV +  +   E+
Sbjct: 12  LLTPGEILNVFKHISPEDCYKLGFSEDYARPEWMIITVLPVPPPAVRPSVQVTDTTRGED 71

Query: 142 DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  I++ N S+Q+  ++ +     S ++SL     LQ  VA Y+++D+ G P ++
Sbjct: 72  DLTFKLADIVKYNMSVQKLEMDGSPQHVISEYESL-----LQFHVATYMDNDIAGQPQAL 126

Query: 197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q + RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +AR LT
Sbjct: 127 QKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPRSIARTLT 186

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
           YPE V+ +NI KL + ++NGP+++PG R + + D   R+     +    + L+ G IV+R
Sbjct: 187 YPEMVTPYNIHKLTELVRNGPNEHPGLRYV-FRDTGERIDLKYHKRAGDIALQYGWIVER 245

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           HL D D VLFNRQPSLH+MS+M HR ++MP+ + R N SV +PYNADFDGDEMN+HVPQ+
Sbjct: 246 HLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSSFRLNLSVTSPYNADFDGDEMNLHVPQS 305

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCY 433
           EE R E   +  V   + +P++ + ++   QD L     +T +D F  YD     L    
Sbjct: 306 EETRAELSQICAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLRDVFIEYDEVMNILYWIP 365

Query: 434 MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
             DG+    +P P I+KP  LWTGKQ+ S++I P       +NL  K++ ++        
Sbjct: 366 SWDGV----IPEPTIVKPKPLWTGKQMLSMVI-PKG-----INLERKDEKFT-------- 407

Query: 494 DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
                   +  +D  +   + E++ G + K T+G     GL   + R+ G    +     
Sbjct: 408 -------YLSNDDTGMLIVDGEIMLGVVNKKTVG-ATGGGLIHAVFREKGPQVCADLFGN 459

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
           + K+   W+ ++GFSIGI D              I    E  +  I +    +L  +PG 
Sbjct: 460 MQKVVNYWLLHYGFSIGIGDTIADAPTVKSITHTIVTAKEKVHEIILKAQRNELPPEPGM 519

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              ++ E  ++ +LN+ R+D GKA   +L   N+   M   GSKGS INISQM ACVGQQ
Sbjct: 520 TLRESFEQSVSQVLNQARDDVGKATADALQDWNNVKQMVSAGSKGSNINISQMSACVGQQ 579

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
            V G+R P GF DRSLPHF +    P ++GFV NS+  GL+  EFFFH M GREGL+DTA
Sbjct: 580 IVEGKRIPFGFADRSLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTA 639

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           VKTA+TGY+ RRL+KALED+ + YD + RN+ G ++QF+YG+DG+D   +E +S
Sbjct: 640 VKTAETGYIQRRLVKALEDIMVHYDGTARNSLGNVLQFVYGEDGLDATQVEKQS 693


>gi|188532149|gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron tulipifera]
          Length = 1010

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 303/722 (41%), Positives = 429/722 (59%), Gaps = 34/722 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D DC +L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+D
Sbjct: 131 LSAERVLSVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDD 190

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++      A       + LQ  +A Y ++++ G P + Q + RP
Sbjct: 191 LTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 250

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  LTYPE V+
Sbjct: 251 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVT 310

Query: 262 DHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHL 317
            +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RHL
Sbjct: 311 PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL--GYKVERHL 368

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E
Sbjct: 369 NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 428

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
            R E L LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D 
Sbjct: 429 TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 488

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
             ++  P PA+LKP  LWTGKQ+F+++I    N+   +  +          I T GD ++
Sbjct: 489 DGKI--PAPAVLKPRPLWTGKQVFNLIIPKQINL---IRTSAWHSEAETGFI-TPGDTQV 542

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
           RIE              EL++G L K TLG      L  V+  + G  A    +     L
Sbjct: 543 RIE------------RGELLAGTLCKKTLGTST-GSLIHVIWEEVGPDAARKFLGHTQWL 589

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
              W+  +GFSIGI D        +K  + IS+        IK   + +L+ +PG    +
Sbjct: 590 VNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQDKQLEAEPGRTMME 649

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           + E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G
Sbjct: 650 SFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 709

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT+
Sbjct: 710 KRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 769

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +       D L 
Sbjct: 770 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK-----LDSLK 824

Query: 798 MK 799
           MK
Sbjct: 825 MK 826


>gi|168066799|ref|XP_001785319.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663074|gb|EDQ49860.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1742

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 303/725 (41%), Positives = 434/725 (59%), Gaps = 40/725 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D +C +L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+D
Sbjct: 215 LSAEKVLSILKRISDEECTLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDSSARSEDD 274

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAG--WETLQVEVAQYINSDVRGVPFSMQVA- 199
           +T +L  II+ N +L+++  E N A   +     + LQ  +A Y ++D+ G P + Q + 
Sbjct: 275 LTHQLAMIIRHNNNLKRQ--EQNGAPTHIINEFAQLLQFHIATYFDNDLPGQPRATQRSG 332

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+    QRLK K+GR RGNL GKRV+++ RTVI+PDPN+ I E+ +P  +A  LTYPE 
Sbjct: 333 RPIKSICQRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPET 392

Query: 260 VSDHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
           V+ +N+E+L++ ++ GP   PG   A+ I   DG  R+     +      L+ G  V+RH
Sbjct: 393 VTPYNMERLKELVEYGPHPPPGKTGAKYIIREDG-QRLDLRFLKKSSDRHLELGYKVERH 451

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           + DGD VLFNRQPSLH+MSIM HR RIMP+ T R N SV +PYNADFDGDEMNMHVPQ+ 
Sbjct: 452 MNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 511

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYM 434
           E R E L LM V   + +P++   ++   QD L     +T++DTF ++  F   LM    
Sbjct: 512 ETRAEVLELMMVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFYNILMWWEE 571

Query: 435 GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
            DG     +P P ILKP  LWTGKQ+FS++I    N+ +       +  Y +    + GD
Sbjct: 572 FDG----KIPIPTILKPRPLWTGKQIFSLIIPKQINL-MRQAFWHPDGEYGD---LSPGD 623

Query: 495 EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
            ++RIE              E+++G L K TLG G +  L  V+  + G  A    +   
Sbjct: 624 TQVRIE------------KGEVVAGTLCKKTLGTG-QGSLIHVIWEEVGPDAARKFLGHT 670

Query: 555 AKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
             L   W+   GFSIGI D        +K  + I++        IK+  + +L+ +PG  
Sbjct: 671 QWLVNYWLLQQGFSIGIGDTIADAATMEKINETITKAKHDVKDLIKKAQDKQLEAQPGRT 730

Query: 615 AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
             ++ E  +  ILN+ R+DAG +   SL   N+   M   GSKG+ INISQM ACVGQQ+
Sbjct: 731 MKESFENRVNGILNKARDDAGASAQKSLAESNNLKAMVTAGSKGTFINISQMTACVGQQN 790

Query: 675 VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
           V G+R P GF+DR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAV
Sbjct: 791 VEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 850

Query: 735 KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFD 794
           KT++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +       D
Sbjct: 851 KTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ-----KLD 905

Query: 795 RLLMK 799
            L MK
Sbjct: 906 SLKMK 910



 Score =  205 bits (522), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 132/407 (32%), Positives = 214/407 (52%), Gaps = 50/407 (12%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T +  E  I    +R+ +  V  G  IG + AQSIGEP TQMTL TFHFAGV++ N+T 
Sbjct: 1059 LTREAFEWVIGEVETRFLMSLVAPGEMIGCVAAQSIGEPATQMTLNTFHFAGVSAKNVTL 1118

Query: 941  GVPRIKEIINGAKRISTPIITAELE--CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR++EIIN AK+I TP +T  L+   N  +  A+ V+  +E T L  V ++ +I    
Sbjct: 1119 GVPRLREIINVAKKIKTPSLTVYLKPGVNKEKERAKNVQCALEYTTLRSVTQATEIWYDP 1178

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKS 1058
               S +I  DME ++  +   + D+  E I  +P +   + + +++  +KL +    +K 
Sbjct: 1179 EPMSTLIEEDMEFVKSYYEMPDEDVAPEKI--SPWLLRIELNREMMVDKKLSMADIAEKI 1236

Query: 1059 KIHFE----------------------------------------LYSLK-NVLPMVIVK 1077
             + F+                                        L  ++ N+L  + ++
Sbjct: 1237 NLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEMTEQSEDDVFLKKIESNMLTEMALR 1296

Query: 1078 GIKTVERVVIAEKEKEKRKVKENGE---KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHI 1134
            GI  + +V I  KE +K +  EN     ++++ L  EG  + AVM  E +D  +T SNH+
Sbjct: 1297 GIPDIRKVFI--KEDKKNRFDENLAFVVEQEWVLDTEGVNMLAVMCHEDVDASRTTSNHL 1354

Query: 1135 FEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKM 1194
             EV + LGIEA R  ++ E+ + +   G  ++ RH+ +L D+MT+RG ++ ITR GI + 
Sbjct: 1355 IEVIEVLGIEAVRNSLLKELRDVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRN 1414

Query: 1195 DKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            D   +M  SFE+T D L +A+V    D ++GV+E I++G   P+GTG
Sbjct: 1415 DTGPMMRCSFEETVDILLDAAVYAEADHLKGVTENIMLGQLAPIGTG 1461


>gi|403346305|gb|EJY72545.1| hypothetical protein OXYTRI_06457 [Oxytricha trifallax]
          Length = 1886

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 289/715 (40%), Positives = 434/715 (60%), Gaps = 31/715 (4%)

Query: 88  PVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           P  V  +F +MT  +  +L + ++P+ +II  + V P  +RPSV M G    E+D+T   
Sbjct: 202 PEEVQRIFSKMTTEEQNLLGI-KKPQNMIIKRLIVCPPPVRPSVSMGGPFKCEDDLTYSY 260

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVP-FSMQVARPLSGFV 206
           ++I+ TN  L +++ +  +        E LQ  VA  ++++  G+P    +  +PL    
Sbjct: 261 QKILVTNNVLARDMDKGANLTTLNKLREQLQFYVAVLMDNECPGIPTHKHKSGKPLKAIR 320

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RL+GK+GR RGNL GKRV+++ R+VI+PDPNL++ ++ +P+ +A+ +T PE V+  NI+
Sbjct: 321 ARLRGKEGRVRGNLMGKRVDFSARSVITPDPNLELDQLGVPMAIAQNVTIPEVVTPQNID 380

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           +LR+ ++NGP +YPGA+ I   D   ++  G    +  V L+ G  V+RHL + D VLFN
Sbjct: 381 ELRRLVENGPHRYPGAKYIIRHD-ERQIDIGILNERSDVHLEYGYKVERHLRNDDYVLFN 439

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+MSIM HRA+I+P+ T R N SV +PYNADFDGDEMNM VPQ+ E+  E   +M
Sbjct: 440 RQPSLHKMSIMGHRAKILPFSTFRLNLSVTSPYNADFDGDEMNMFVPQSYESMAEVKEIM 499

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTP 446
            V N + +P++ + ++   QD L    L TRKD F DR     +  ++G   D+V LPTP
Sbjct: 500 AVPNQIISPQSNKPVMGIVQDSLLGIMLFTRKDNFIDRNTAMNLMMWLGKYSDKV-LPTP 558

Query: 447 AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN- 505
           A+LKP  LWTGKQ+ S++I P  N+  +     K     N                CP  
Sbjct: 559 AVLKPKPLWTGKQILSLVI-PDVNLTKFFEAPPKPPQRRN---------------WCPTQ 602

Query: 506 DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
           +  V  +  +LI+G L KAT G+ ++ GL  ++ ++ G       ++    +  +W+  H
Sbjct: 603 ETIVLIQRGQLITGHLNKATAGSSSQ-GLIHIIWKECGPDGAKQFLSNAQNVVNQWLIEH 661

Query: 566 GFSIGIDD-VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
           GF++G+ D +  KK +     KL   N +V  + I++  +GKL  +PG +  ++ E ++ 
Sbjct: 662 GFTVGVQDTIASKKTMDGIHQKLQHYNNKVARL-IQKAEQGKLTTQPGKNMMESFEYLVN 720

Query: 625 DILNRIREDAGKACMGSL-PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
           + LN+ R++AG+     L PW N    M   GSKG+ INISQ++ CVGQQ+V G+R   G
Sbjct: 721 NNLNQARDEAGQLAFKDLDPW-NKIQNMVGAGSKGTNINISQIMGCVGQQNVEGKRVQFG 779

Query: 684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
           F  R+LPHFP+    PA+KGFV N++ SGL   EFFFH MGGREGL+DTAVKT++TGY+ 
Sbjct: 780 FKSRTLPHFPKHDYGPASKGFVINNYISGLDPPEFFFHAMGGREGLIDTAVKTSETGYIQ 839

Query: 744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
           RRL+KALED+ ++YD +VRN+G  ++QFLYG+DG     + G+  E L  D L M
Sbjct: 840 RRLVKALEDIMVKYDGTVRNSGEQVIQFLYGEDG-----IAGEHIEDLKIDLLKM 889



 Score =  186 bits (473), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 130/417 (31%), Positives = 202/417 (48%), Gaps = 58/417 (13%)

Query: 885  QLEVFIQTCF--------SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 936
            Q E F +T F        +R+    V  G  +G+I A S+GEP TQMTL TFHFAGV+S 
Sbjct: 1046 QQERFTKTAFDFLIGEIKARFESSLVHPGEMVGSIAAHSLGEPATQMTLNTFHFAGVSSK 1105

Query: 937  NITQGVPRIKEIINGAKRISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKI 994
            N+T GVPR+KE+IN +K ISTP+++  L+    +N   V  ++G IE T L  + +S  I
Sbjct: 1106 NVTLGVPRLKEVINVSKNISTPMVSIYLQGQHKKNEKTVMQIQGLIEHTNLSHLVESTGI 1165

Query: 995  VMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKI--------KLKQQHIKV--- 1043
                     +I  D   +   +L    D+   S   +P +        KL+ + I +   
Sbjct: 1166 FYDPDPTKTIIKDDQALVDLYNLV--PDLNNASKCPSPWVLRLRLDPNKLQSKDITMDFI 1223

Query: 1044 ---------------------------LDFRKLEIFPPVD-KSKIHFELYSLKNV----L 1071
                                       L FR +      D +S+    +  LK +    L
Sbjct: 1224 DKKVQDTFGDFISVMASDTNASINVLRLRFRDINDEDDADGESEQETAVMFLKQIETQLL 1283

Query: 1072 PMVIVKGIKTVERVVIAEKEKEKRKVKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCK 1128
                +KGI  + +V   + ++ +  +K    K+    + L  +G  LQ ++    +D  K
Sbjct: 1284 NEFTLKGIPEISKVYAKKYQEIEYDIKTGVFKQTSDNFMLETDGVALQKILSVNNVDYKK 1343

Query: 1129 TKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITR 1188
            T SN I E+   LGIEA R+ +I+E+   +  +G+ ++ RH+  L D+M  RG++  ITR
Sbjct: 1344 TVSNDILEILNVLGIEAVRMSLINELRAVLNFYGIYVNYRHLSTLCDVMCQRGKLTAITR 1403

Query: 1189 FGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             GI +MD   L  ASFE+T + L  A+V    D ++GV+E I++G   PLGTG   +
Sbjct: 1404 HGINRMDSGPLRKASFEETVEILLEAAVYNETDHLKGVTEAIMLGQLAPLGTGSFDV 1460


>gi|33326217|gb|AAQ08518.1| RNA polymerase II largest subunit [Amborella trichopoda]
          Length = 1013

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 302/713 (42%), Positives = 422/713 (59%), Gaps = 29/713 (4%)

Query: 91  VLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL + KR+TD DC++L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+D+T +L
Sbjct: 139 VLNVLKRITDEDCQLLGLNPKYARPDWMILQVMPIPPPPVRPSVMMDTSSRSEDDLTHQL 198

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             +I+ N +L+++      A       + LQ  VA Y ++++ G P + Q + RP+    
Sbjct: 199 AMVIRHNENLKRQEKNGAPAHIISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSIC 258

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  LTYPE V+ +NIE
Sbjct: 259 SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIE 318

Query: 267 KLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDV 322
           +L++ ++ GP   PG   A+ I   DG    L Y K      +EL  G  V+RHL DGD 
Sbjct: 319 RLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSGDHHLEL--GYKVERHLNDGDF 376

Query: 323 VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA 382
           V FNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E 
Sbjct: 377 VFFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 436

Query: 383 LLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVD 442
           L LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D   ++ 
Sbjct: 437 LELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKI- 495

Query: 443 LPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETM 502
            P PAILKP  LWTGKQ+F+++I    N+  Y        + S     T GD  +RIE  
Sbjct: 496 -PAPAILKPRPLWTGKQVFNLIIPKQINLIRYSAW----HSESESGFITPGDTCVRIE-- 548

Query: 503 CPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWI 562
                       EL+SG L K TLG  +   L  V+  + G  A    +     L   W+
Sbjct: 549 ----------RGELLSGTLCKKTLGTSS-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 597

Query: 563 GNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAV 622
               FSIGI D        +K  + IS+        IK   E +L+ +PG    ++ E  
Sbjct: 598 LQQAFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENR 657

Query: 623 ITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPN 682
           +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R P 
Sbjct: 658 VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 717

Query: 683 GFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYM 742
           GF DR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++TGY+
Sbjct: 718 GFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 777

Query: 743 SRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR 795
            RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L   R
Sbjct: 778 QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKR 830


>gi|397135956|gb|AFO11473.1| RNA polymerase I, partial [Komagataella pastoris]
          Length = 872

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 284/709 (40%), Positives = 423/709 (59%), Gaps = 33/709 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  +L +F+ ++  DC  L  +E   RPE +IIT + VPP  +RPS+ MD +   ++
Sbjct: 14  LLTPGEILNVFRHISPEDCFRLGFNEDYARPEWMIITVLPVPPPQVRPSIAMDETTQGQD 73

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N ++Q+  ++ +         + LQ  VA Y+++D+ G P ++Q + R
Sbjct: 74  DLTHKLSDILKANINVQKLEMDGSPQHIINEVEQLLQFHVATYMDNDIAGQPQALQKSGR 133

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           P+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +PI +A+ L+YPE V
Sbjct: 134 PVKAIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPISIAKTLSYPETV 193

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           + +NI +L + ++NGP+++PGA+ +   +G  R+     +    + L+ G  V+RHL D 
Sbjct: 194 TQYNIHRLTEYVRNGPNEHPGAKYVIRDNGD-RIDLRYHKRAGDIVLQYGWKVERHLMDD 252

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R 
Sbjct: 253 DPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRA 312

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYMGDGM 438
           E   L  V   + +P++ + ++   QD L     +T +DTF  Y++    L      DG+
Sbjct: 313 ELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIEYEQVMNMLFWVPSWDGV 372

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
               +P PAI+KP  LWTGKQL S+ I    +++                 RT+G   + 
Sbjct: 373 ----VPQPAIMKPKPLWTGKQLLSIAIPSGIHLQ-----------------RTDGGNSL- 410

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
              + P D  +   +  ++ G + K T+G+G   GL   ++R+ G    +     + K+ 
Sbjct: 411 ---LSPKDNGMLIVDGNVMFGVVDKKTVGSGGG-GLIHTVMREKGPKICAELFGNIQKVV 466

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
             W+ ++GFSIGI D         +    IS   E     I +    +L+LKPG    ++
Sbjct: 467 NYWLLHNGFSIGIGDAIADASTMKEITHAISSAKEQVQEIIYKAQHNELELKPGMTLRES 526

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            E  ++  LN  R+ AG++   +L   N+   M   GSKGS INI+QM ACVGQQ V G+
Sbjct: 527 FEGEVSRTLNDARDSAGRSAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQMVEGK 586

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R   GF DRSLPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DTAVKTA+
Sbjct: 587 RIAFGFADRSLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 646

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           TGY+ RRL+KALED+ + YD + RN+ G I+QFLYG+DG+D   +E ++
Sbjct: 647 TGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFLYGEDGLDGTQVERQT 695


>gi|83320428|gb|ABC02841.1| RNA polymerase II largest subunit, partial [Spizellomyces
           punctatus]
          Length = 792

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 290/693 (41%), Positives = 417/693 (60%), Gaps = 23/693 (3%)

Query: 74  ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPS 130
           E ++     T  L    V  LF+++++ DC  L L+    RPE +IIT + VPP+A+RP+
Sbjct: 119 EEESGQEPKTEPLTAEKVHQLFQKISEDDCMSLGLNPDWARPEWMIITVLPVPPMAVRPA 178

Query: 131 VIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVR 190
           V MDG  +N++D+T +L+ I+  N+ L++   E + A       + LQ  +A Y+++D+ 
Sbjct: 179 VSMDGVATNQDDLTHKLRDIVLANSFLRKHETEGSPAHVINEFEKLLQYHIATYMDNDIA 238

Query: 191 GVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIR 249
           G+P S+Q + RPL     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL I EV +P  
Sbjct: 239 GLPPSLQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEVGVPRS 298

Query: 250 MARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKS 309
           +AR LT+PE V+ +NI +L++ ++ GP ++ GA+ +   DG  R+     R    + L++
Sbjct: 299 IARNLTFPETVTPYNIHRLQEMVRKGPLEHGGAKYVIKDDG-QRIDLRYNRRGGDIHLQN 357

Query: 310 GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMN 369
           G  V+RHL D D+V+FNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN
Sbjct: 358 GYRVERHLMDNDIVIFNRQPSLHKMSMMGHRVKVMPYSTFRXNLSVTSPYNADFDGDEMN 417

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +HVPQ+ E + E + L  V   + +P+    ++   QD L      T++DTF  R     
Sbjct: 418 LHVPQSYETKAELMELCMVPKQIVSPQKNAPVMGIVQDTLCGIRKFTKRDTFLRRDFVMN 477

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           +  ++ D    V  P PAILKPV LWTGKQ+ S++I P  N+  Y               
Sbjct: 478 LLMWVPDWDGTV--PQPAILKPVPLWTGKQIMSLVIPPKINVTGY--------------- 520

Query: 490 RTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSG 549
            +  DE+   +    +D  V   N EL++G L K T+G+ + +G+  V + ++G  A   
Sbjct: 521 HSAFDEQTDKDDGSSSDCKVLIENGELLTGILCKKTVGS-SANGIIHVTMNEHGPEAAKA 579

Query: 550 CMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQL 609
             N    +   W+  +GFSIGI D    +  SD+    IS   +     I++    KL+ 
Sbjct: 580 FFNGTQLVVNHWLLQNGFSIGIGDTIADRPTSDQITSTISNAKKEVTKIIEKAQSDKLEG 639

Query: 610 KPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVAC 669
            PG    ++ E+++   LNR R++AGK+   SL   N+   M   GSKGS INISQM AC
Sbjct: 640 LPGMTIRESFESLVNKELNRARDNAGKSAQASLKEYNNVKQMVVAGSKGSYINISQMSAC 699

Query: 670 VGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
           VGQQ+V G+R P GF  RSLPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL
Sbjct: 700 VGQQNVEGKRIPFGFKYRSLPHFTKDDHTPESRGFVENSYLRGLTPQEFFFHAMGGREGL 759

Query: 730 VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
           +DTAVKTA+TGY+ RRL+KALEDL  QYD +VR
Sbjct: 760 IDTAVKTAETGYIQRRLVKALEDLMAQYDGTVR 792


>gi|120561217|gb|ABM26994.1| RNA polymerase II largest subunit, partial [Mucor hiemalis]
          Length = 1009

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 291/708 (41%), Positives = 421/708 (59%), Gaps = 30/708 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L    VL + K ++D D   + LSE   RPE +I T + VPP  +RPS+ MDG+   E+D
Sbjct: 128 LTAAKVLQILKNISDQDIRDMGLSEEFARPEWMITTVLPVPPPQVRPSIQMDGTSRGEDD 187

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  +++ NA++++   E           + LQ  +A Y+++D+ G P ++Q + RP
Sbjct: 188 LTHKLSDVLKANANVRRCESEGAPVHVVQEFEQLLQFHIATYMDNDIAGQPQALQKSGRP 247

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + +V +P  +AR LTYPE V+
Sbjct: 248 LKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNLDQVGVPRSIARNLTYPEIVT 307

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLEDG 320
            +NI+KL+  ++NGP ++PGA+ +   +G    L  ++R +   + L+ G  V+RH+ D 
Sbjct: 308 PYNIDKLQALVRNGPLEHPGAKYVIRDNGERIDL--RYRKRAGEIPLQYGYRVERHINDD 365

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           DVV+FNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+ E R 
Sbjct: 366 DVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRA 425

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DRAAFSLMCCYMGDGM 438
           E   +  V   + +P++ + ++   QD L      T +D F   D     +M     DG 
Sbjct: 426 EVTEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTLRDCFMTKDLVMNIVMWVPSWDGY 485

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
               +P PAILKP  +WTGKQ+ S++I    N + + +              T  D E  
Sbjct: 486 ----IPPPAILKPKPMWTGKQIVSMVIPKGINCQTFHS--------------THPDGEST 527

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
           +  + P D  V   N ELI G + K T+G     GL   ++ + G  A    +    ++ 
Sbjct: 528 L--ISPGDTRVIIENGELICGIVCKKTVGTAG-GGLIHTIMNELGPEAAKNFLGGTQQVV 584

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
             W+  +GFSIGI D    K        +IS+  +     I    + KL+++PG    ++
Sbjct: 585 NYWLLQNGFSIGIGDTIADKVSMATITNIISQAKQRVQEVIITAQQDKLEVQPGMTLRES 644

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            EA +   LN+ R+DAGK    SL   N+   M   GSKGS INISQM ACVGQQ+V G+
Sbjct: 645 FEAKVNQTLNKARDDAGKMAQNSLKEDNNVKQMVISGSKGSFINISQMSACVGQQNVEGK 704

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH MGGREGL+DTAVKTA+
Sbjct: 705 RIPYGFKFRTLPHFSKDDHSPESRGFVENSYLRGLTPTEFFFHAMGGREGLIDTAVKTAE 764

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           TGY+ RRL+KALED+ ++YD +VRN+ G I++F YG+DGMD  ++E +
Sbjct: 765 TGYIQRRLVKALEDVMVKYDGTVRNSLGDIIEFCYGEDGMDALSVESQ 812


>gi|119872216|ref|YP_930223.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum islandicum DSM
           4184]
 gi|119673624|gb|ABL87880.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum islandicum DSM
           4184]
          Length = 884

 Score =  524 bits (1350), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 288/771 (37%), Positives = 432/771 (56%), Gaps = 48/771 (6%)

Query: 14  LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTK 73
           L  ++ +K    AS+ + CP CGY                 R+K+      F       +
Sbjct: 137 LALNLHEKIRKKASERMTCPHCGY----------------KRNKI-----RFERPYYFYE 175

Query: 74  ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPS 130
           E++    V    L+P  +     ++ + D E+L ++    RPE  I+  + VPP  +RPS
Sbjct: 176 ETEEGALVR---LDPETLRDRLAKIPNEDLELLGINPSVARPEWAILKVLPVPPPHVRPS 232

Query: 131 VIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVR 190
           + ++    +E+D+T +L  II+ N  L+  +            W+ LQ  +A Y ++++ 
Sbjct: 233 IQLESGVRSEDDLTHKLVDIIRMNEKLKIAIETGAPTNVVDNLWDLLQYHIATYFDNELP 292

Query: 191 GVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIR 249
           G+P +     RPL G  QRLKGK+GRFRG+LSGKRV ++ RTVISPDP++ I EV +P  
Sbjct: 293 GIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPHISINEVGVPYD 352

Query: 250 MARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELK 308
           +A+ILT PERV+  N++ LR+ +  GP+ +PGA  +  P+G    L Y K R  LA  L 
Sbjct: 353 VAKILTVPERVTPWNVDILREYVIRGPETWPGANYVVTPEGRRIDLRYVKDRRALAERLA 412

Query: 309 SGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEM 368
            G IV+RHL DGD+VLFNRQPSLHR+S+M H  +++P RT R + +VC PYNADFDGDEM
Sbjct: 413 PGWIVERHLRDGDIVLFNRQPSLHRVSMMGHLVKVLPGRTFRLHLAVCPPYNADFDGDEM 472

Query: 369 NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 428
           N+HVPQTEEAR EA  LM V+ ++ TP+ G  ++ + QD++  +++++ K TF  +   +
Sbjct: 473 NLHVPQTEEARAEARTLMLVEKHIITPRYGGAIIGARQDYIIGAYILSHKSTFLTKKEVA 532

Query: 429 LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKL 488
            +   +G G    D P PAIL PVELWTGKQ+ S  +    N        V+   + +K 
Sbjct: 533 YL---LGAGKSVEDPPEPAILHPVELWTGKQIISHFLPKDLNW-------VQPTAFKSK- 581

Query: 489 IRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
                    +    C  D ++   N  L+ G L K ++G    D L+  + RDY      
Sbjct: 582 --------CQDAYKCNGDEWIIVINGNLVKGVLDKKSIGAEQVDSLWHRIARDYPPEIAR 633

Query: 549 GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
             ++   ++  R++   GF+ G+D V    E   +   +I E+ +     ++E+  G+L+
Sbjct: 634 QWLDSSLRVFLRFLDLRGFTFGMDSVYLPDEAYKELNMIIEESLKKAYTLVEEFRSGRLE 693

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
             PG    +T E  IT+IL+++REDA       +       +M++ G++GS +NI QMVA
Sbjct: 694 AMPGFTVEETFENKITEILSKVREDATTVVEKYVKRDAEGYLMAKTGARGSIVNIVQMVA 753

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            +GQQ++ G R   G+  R LPHFP     P   GFV   F  GL+  E+FFH   GR+G
Sbjct: 754 TLGQQTIRGERIRRGYRTRVLPHFPAGDIGPFVGGFVKRCFRCGLTPVEYFFHAAAGRDG 813

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           L+DTAV+TA +GYM RRLI AL+D+   YD +VR  G  ++Q LYG+DG+D
Sbjct: 814 LIDTAVRTAQSGYMQRRLINALQDVYTAYDGTVRFGGAILLQPLYGEDGVD 864


>gi|12642618|gb|AAK00313.1|AF315823_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Stylonychia
           mytilus]
          Length = 1678

 Score =  524 bits (1350), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 291/721 (40%), Positives = 431/721 (59%), Gaps = 37/721 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           IL     L + +R+TD DCE++  +    RPE +II N+AV P  +RPSV M  +  +E+
Sbjct: 102 ILQADEALRVLERITDEDCELMGFNPRISRPENMIIKNLAVAPPPVRPSVSMSNTMRSED 161

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVAR 200
           D+T   ++I+QTN +LQ ++    +          LQ  VA  ++++++G P    +  +
Sbjct: 162 DLTYCYQKILQTNITLQNQINRGANMTTINELRTNLQYYVATVMDNEIQGQPTQKHKSGK 221

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL     RL+GK+GR RGNL GKRV+++ RTVI+PDPNL++ ++ +P ++A  LT PE V
Sbjct: 222 PLKAIRARLRGKEGRLRGNLMGKRVDFSARTVITPDPNLQLDQLGVPQQIALNLTVPETV 281

Query: 261 SDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           ++ NI+++R+ I+ GP+ +PGA+ +IR+ D   ++   + RN+    +  G  V+RHL D
Sbjct: 282 TNENIDEMRKLIERGPNIWPGAKYIIRHDD--RQIDLSQMRNRSEATIHPGFKVERHLRD 339

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
            D V+FNRQPSLH+MS+M HR +++P+ T R N SV  PYNADFDGDEMNMHVPQ+ E  
Sbjct: 340 NDYVIFNRQPSLHKMSLMGHRVKVLPFSTFRLNLSVTTPYNADFDGDEMNMHVPQSYETM 399

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   +M V N + +P++ + ++   QD L    L T KDTF ++    +M   M    +
Sbjct: 400 AEIKEIMAVPNQIVSPQSNKPVMGIVQDSLLGVMLFTLKDTFIEKEL--VMQLLMWAKYE 457

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
               P P ILKP  LWTGKQ+FS++I P  N++      V EK     +  + GD  I I
Sbjct: 458 DDKFPMPTILKPRPLWTGKQIFSLII-PDINLQ-----KVGEK--KGLIWDSAGDLNILI 509

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
                       R  ELI G L K T+G+ +  G+  ++ ++ G +     ++    +  
Sbjct: 510 ------------RKGELICGNLTKGTIGSSS-GGMIHIIWKEKGPYCCRDFLSNTQLIIN 556

Query: 560 RWIGNHGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
            W+  +GF++G+ D+  KKE+  K +  +     +V  ++ K    GKL+ +PG    ++
Sbjct: 557 NWLHQNGFTVGVQDIIAKKEIVQKIRDSMTKFKRDVTKIQQKA-QLGKLKSQPGKSMMES 615

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            EA +   LN+ R+D G   +  L   N    M   GSKGS +NISQ++ACVGQQ+V G+
Sbjct: 616 FEASVNQCLNKARDDCGNMALADLSSWNRLKAMVYAGSKGSNLNISQIMACVGQQNVEGK 675

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R P GF  RSLPHF +    P +KGFV N + +GL+  EFFFH MGGREGL+DTAVKTA+
Sbjct: 676 RIPFGFYKRSLPHFSKDDFGPESKGFVENCYLNGLTPQEFFFHAMGGREGLIDTAVKTAE 735

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
           TGY+ RRLIKALED+ ++YD +VR +   I+QFLYG+DG     M G+  E L  + L M
Sbjct: 736 TGYIQRRLIKALEDVMVKYDGTVRTSKEQIIQFLYGEDG-----MAGEHIEDLTINLLKM 790

Query: 799 K 799
           K
Sbjct: 791 K 791



 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/392 (34%), Positives = 203/392 (51%), Gaps = 42/392 (10%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+    V  G  +G+IGAQS+GEP TQMTL TFHFAGV++ N+T GVPR+KEIIN AK 
Sbjct: 967  SRFDQALVNPGEMVGSIGAQSMGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKN 1026

Query: 955  ISTPIITAELECND--NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +   L+  D  +E  A ++ GRIE T L  V KS  I         ++  D E I
Sbjct: 1027 IKTPSMKIFLKDKDKQDERIATIIGGRIEHTTLCHVVKSSAIYYDPDPERTIVREDEELI 1086

Query: 1013 Q--------DAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP---VDKSKIH 1061
            +        +      +  V    +   K++ K   +++++ +  +IF     V KS  +
Sbjct: 1087 RLYNEVRLFETERRRTSPWVLRFELDNDKVQFKDLSMQLIEQKINDIFRDQIDVVKSDEN 1146

Query: 1062 FELYSLK------------------------NVLPMVIVKGIKTVERVVIAEKEKEKRKV 1097
             E   L+                         +   + +KG+  + +V   +   E   V
Sbjct: 1147 AEKLVLRLRVNDIEDDEEDRTVCMYLKGFQDELFNDLALKGLHEISKVTFTKYNDEIFDV 1206

Query: 1098 KENGEKKK----YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDE 1153
             E GE K+    + +  +G  LQ V+G EGI+  KT SN I E+ + LGIEA R+ +I+E
Sbjct: 1207 -ETGECKQDKECWLIETDGVALQKVLGLEGINYKKTVSNDIIEILRVLGIEAVRMSLINE 1265

Query: 1154 INETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFN 1213
            +   + ++G+ ++ RH+  L D+MT RG +  ITR GI ++D S L   SFE+T + L  
Sbjct: 1266 LRFVLSSYGIYVNYRHLSTLCDVMTQRGILTAITRHGINRVDSSPLRKCSFEETVEILLE 1325

Query: 1214 ASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            A+V    D ++G++E IIMG   P GTG  +I
Sbjct: 1326 AAVFAETDPLKGITENIIMGQLAPFGTGCFEI 1357


>gi|6624245|dbj|BAA88487.1| RNA polymerase III largest subunit [Lethenteron reissneri]
          Length = 538

 Score =  524 bits (1350), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 275/553 (49%), Positives = 363/553 (65%), Gaps = 19/553 (3%)

Query: 369 NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 428
           N+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+ QDF+T  +L+T KDTF+DRA  S
Sbjct: 1   NLHLPQTEEAKAEALILMGTKANLVTPRNGEPLIAAIQDFITGGYLLTHKDTFFDRARAS 60

Query: 429 LMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS 485
            +   M  G D   R+ LP PA++KPV LWTGKQ+FS+++RP+    V +NL  + K Y+
Sbjct: 61  QIAASMLAGCDSAVRITLPRPAVVKPVSLWTGKQVFSLILRPNPRDPVRLNLRTRGKQYT 120

Query: 486 NKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAH 545
                         E +C +D FV   NSEL++G L K+TLG+G+K  ++ +LLRD+G  
Sbjct: 121 G-----------HGEDLCTSDSFVVIENSELLAGSLDKSTLGSGSKASVFYLLLRDWGQE 169

Query: 546 ATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEG 605
           A +  M+RLA+++  ++ N GFS+GI DV P + L   K +L+SE Y  C   I + + G
Sbjct: 170 AAACGMSRLARMTPAFLSNRGFSVGIGDVTPGRGLLRAKQQLLSEGYSKCRDFIAQLHSG 229

Query: 606 KLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQ 665
           +LQ +PGC A QTLEAVI   L+ IR+ AG AC+  L   NSPL M+ CGSKGS INISQ
Sbjct: 230 RLQQQPGCSAEQTLEAVILKELSVIRDHAGTACLRELHKTNSPLTMALCGSKGSFINISQ 289

Query: 666 MVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGG 725
           M+ACVGQQ++ G R PNGF DRSLPHF + +K PAAKGFVANSFYSGLS TEFFFHTMGG
Sbjct: 290 MIACVGQQAISGSRIPNGFEDRSLPHFDKHSKIPAAKGFVANSFYSGLSPTEFFFHTMGG 349

Query: 726 REGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEG 785
           REGLVDTAVKTA+TGYM RRL+K+LEDL  QYD +VR++ G +VQF+YG D +DPA ME 
Sbjct: 350 REGLVDTAVKTAETGYMQRRLVKSLEDLCAQYDLTVRSSTGDVVQFVYGGDNLDPAAMEA 409

Query: 786 KSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEA-FLNSLRKF 844
           +   PL+F R+L  VK   P   +  LS  Q+       L +     C    FL  LR F
Sbjct: 410 RD-SPLDFQRVLSHVKCNYPCPTESALSSSQLLLSGRAALESSELMECHGGDFLQDLRLF 468

Query: 845 FEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEA 904
            E    ++ K     +  G +D       + ++   +T  QLE F+QTC  +Y   R+E 
Sbjct: 469 LELYSARIHKT---RQKYGINDSGTTTPRILYQLDRVTPTQLERFLQTCRDKYLRSRMEP 525

Query: 905 GTAIGAIGAQSIG 917
           G+A+GA+ AQSIG
Sbjct: 526 GSAVGAVCAQSIG 538


>gi|120561209|gb|ABM26990.1| RNA polymerase II largest subunit, partial [Phragmidium sp. MB]
          Length = 1013

 Score =  524 bits (1349), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 302/707 (42%), Positives = 431/707 (60%), Gaps = 35/707 (4%)

Query: 94  LFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQS-NENDITERLKR 149
           +  ++ D D  ++ L     RPE +++T + +PP  +RPS+ MDG  +  E+D+T +L  
Sbjct: 146 ILHQIPDEDLRIMGLHTEEARPEWMVLTALPIPPPPVRPSIAMDGGATRGEDDLTYKLAE 205

Query: 150 IIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA-RPLSGFVQ 207
           +I+TN +L + ++ A S    +  +ETL Q  +A Y+++D+ G P +MQ + RP+     
Sbjct: 206 VIKTNKALGEHIL-AGSPAHIITEFETLLQWHIATYMDNDLPGQPQAMQKSGRPIKSIRA 264

Query: 208 RLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEK 267
           RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ +V +P  +AR LTYPERV+ +NI  
Sbjct: 265 RLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNISY 324

Query: 268 LRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNR 327
           L++ +QNGP +YPGAR +    G    L  K+  +    L+ G IV+RHL+DGD VLFNR
Sbjct: 325 LQELVQNGPTEYPGARYVIRDTGDRIDL--KYNKRADTFLQYGWIVERHLKDGDYVLFNR 382

Query: 328 QPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMG 387
           QPSLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMN+HVPQ+EE R E   +  
Sbjct: 383 QPSLHKMSMMAHRIKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELAQIAW 442

Query: 388 VQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPA 447
           V  N+ +P+  + ++   QD L      T +D F DR     +  ++  G D V +P PA
Sbjct: 443 VPRNIVSPQANKPVMGIVQDTLCGVRKFTLRDCFMDRDFVQNILLWV-PGWDGV-VPPPA 500

Query: 448 ILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDG 507
           ILKP  LWTGKQ+ S+ I    N                 L R   D+E +      + G
Sbjct: 501 ILKPKPLWTGKQILSMCIPKGIN-----------------LFR---DDENQTSIPVADKG 540

Query: 508 FVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGF 567
            ++  + E+I G + K T+G  ++ G+  V+ R+ G   T G  + +  +   W+ +HGF
Sbjct: 541 -MWIEDGEIIYGVVDKKTVG-ASQGGIIHVIFREKGPEVTRGLFSGIQMVVNYWLLHHGF 598

Query: 568 SIGIDDVQPKKELSDKKGKLISE-NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDI 626
           SIGI D  P K   +     IS+   EV +V I    E KL  +PG    ++ EA +   
Sbjct: 599 SIGIGDTVPDKATMEAITNFISDAKREVSDVIIAA-QEDKLLPEPGMTIRESFEAKVNRA 657

Query: 627 LNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFID 686
           LN  R++AG++   SL   N+   M   GSKGS INISQM ACVGQQSV G+R P GF  
Sbjct: 658 LNMARDNAGRSAEQSLKDDNNVKQMVTAGSKGSFINISQMSACVGQQSVEGKRIPYGFKY 717

Query: 687 RSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRL 746
           R+LPHF +    P ++GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+TGY+ RRL
Sbjct: 718 RTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRL 777

Query: 747 IKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
           +KALED+ + YD +VRN+ G IVQF+YG+DG+D   +E ++ +P+  
Sbjct: 778 LKALEDVMVTYDGTVRNSLGDIVQFVYGEDGVDGGTVEYQNLDPVRL 824


>gi|403175763|ref|XP_003334524.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|375171744|gb|EFP90105.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 1703

 Score =  524 bits (1349), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 306/756 (40%), Positives = 446/756 (58%), Gaps = 43/756 (5%)

Query: 35  CGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFL 94
           CG++   ++K    + + + + K  E  +E    +  T+      + A  IL        
Sbjct: 179 CGHLQPQIRKEGLKMFLQYTKRKGEED-EEGVGTLAGTERKPLPASQAQAIL-------- 229

Query: 95  FKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQS-NENDITERLKRI 150
            +R++D D ++L L     RPE +++T + +PP  +RPS+ MDG  +  E+D+T +L  +
Sbjct: 230 -RRISDEDLQILGLHASEARPEWMVLTVLPIPPPPVRPSIAMDGGATRGEDDLTYKLAEV 288

Query: 151 IQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQ-VARPLSGFVQR 208
           I+ N ++++   E   A   +  +ETL Q  +A Y+++D+ G P ++Q   RP+     R
Sbjct: 289 IKANQAVRKFESEGAPA-HVITEFETLLQWHIATYMDNDLPGQPQALQKSGRPIKSLRAR 347

Query: 209 LKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKL 268
           LKGK+GR RGNL GKRV+++ RTVI+ DPNL++ +V +P  +AR LTYPERV+ +NI  L
Sbjct: 348 LKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNISYL 407

Query: 269 RQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQ 328
           ++ +QNGP +YPGAR +    G    L  ++  +    L+ G IV+RHL+DGD VLFNRQ
Sbjct: 408 QELVQNGPTEYPGARYVVRDTGDRIDL--RYNKRADTFLQYGWIVERHLKDGDYVLFNRQ 465

Query: 329 PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGV 388
           PSLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMN+HVPQ+EE R E   +  V
Sbjct: 466 PSLHKMSMMSHRIKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELAQIAWV 525

Query: 389 QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAI 448
             N+ +P+  + ++   QD L      T +D F DR     +  ++  G D V +P PAI
Sbjct: 526 PRNIVSPQANKPVMGIVQDTLCGVRKFTLRDCFMDRDFVQNILLWV-PGWDGV-VPPPAI 583

Query: 449 LKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGF 508
           LKP  LWTGKQ+ S+ I P       +NL   ++  ++  I  +G               
Sbjct: 584 LKPKPLWTGKQILSMCI-PKG-----INLLRDDENQTSIPIADKG--------------- 622

Query: 509 VYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFS 568
           ++  + E++ G + K  +G  ++ GL  V+ R+ G   T G  + +  +   W+ +HGFS
Sbjct: 623 LWIEDGEIVYGVVDKKCVG-ASQGGLIHVIFREKGPQVTRGLFSGIQMVVNYWLLHHGFS 681

Query: 569 IGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILN 628
           IGI D  P K   +     ISE     +  I    E KLQ +PG    ++ EA +   LN
Sbjct: 682 IGIGDTVPDKATMEAITNFISEAKREVSETISLAQEDKLQPEPGMTIRESFEAKVNRALN 741

Query: 629 RIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRS 688
             R++AG++   SL   N+   M   GSKGS INISQM ACVGQQSV G+R P GF  R+
Sbjct: 742 TARDNAGRSAEQSLKDDNNVKQMVTAGSKGSFINISQMSACVGQQSVEGKRIPYGFKYRT 801

Query: 689 LPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIK 748
           LPHF +    P ++GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+TGY+ RRL+K
Sbjct: 802 LPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLK 861

Query: 749 ALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           ALED+ + YD +VRN+ G IVQF+YG+DG+D   +E
Sbjct: 862 ALEDVMVTYDGTVRNSLGDIVQFVYGEDGVDGGTVE 897



 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/398 (30%), Positives = 203/398 (51%), Gaps = 50/398 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+       G   G + AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEIIN A  
Sbjct: 1069 ARFNQSLAAPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATN 1128

Query: 955  ISTPIITAELECN--DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T  L  N  ++  AA+ ++  +  T L  V  S +I+      S ++  D++ +
Sbjct: 1129 IKTPSLTVYLNENIANDIEAAKDIQTELAHTTLKTVTASTQIIYDPNPKSTIVEEDLDFV 1188

Query: 1013 QDAHLCINADIVKESI-VQTPKI-KLKQQHIKVLD---------FRKLEIFPPV------ 1055
             DA   +  D V+  +  Q+P + +L+    K+LD          R  E+F         
Sbjct: 1189 -DAFFAVPDDEVEAQLDHQSPWLLRLELDRAKMLDKKLSMNFVASRIAEVFKSDLFIIWS 1247

Query: 1056 -----------------------DKSKIHFELY--SLKNVLPMVIVKGIKTVERVVIAEK 1090
                                   D+ ++  +++   +  +L  + ++G++ ++RV + + 
Sbjct: 1248 EDNAEKLTIRCRAMQSSEADKDDDEGQVEEDVFLREIDQMLGGISLRGVEGIQRVFMLQH 1307

Query: 1091 EKEKRKVKENGE---KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAAR 1147
                  +  +GE   K ++ L  +G  L+ V+  +G+D  +T SN+  E+   LG+EAAR
Sbjct: 1308 NVNY--INSSGEFERKTEWVLETDGINLKEVLCVDGVDPIRTVSNNCVEILTVLGVEAAR 1365

Query: 1148 ICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKT 1207
              ++ E+   ++  G  ++ RH+ LL DLMT RG ++ ITR GI + D   LM  SFE+T
Sbjct: 1366 ASLLKELRNVIEFDGSYVNYRHLALLCDLMTNRGSLMAITRHGINRTDTGPLMRCSFEET 1425

Query: 1208 ADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             + L +A+  G  D   GV+E +++G   P+GTG   +
Sbjct: 1426 VEILMDAAALGEKDHCTGVAENVLLGQLAPMGTGAFDV 1463


>gi|403365508|gb|EJY82539.1| hypothetical protein OXYTRI_19848 [Oxytricha trifallax]
          Length = 1782

 Score =  524 bits (1349), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/711 (39%), Positives = 429/711 (60%), Gaps = 30/711 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
            L P     +F+R+ +  C ++       RPE +II N+AV P  +RPSV M  +  +E+
Sbjct: 185 FLQPDEAHKVFERIDEESCTLMGFQPKISRPENMIIKNLAVAPPPVRPSVSMGNTMRSED 244

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVAR 200
           D+T    +I+QTN +LQ ++ +  +        ++LQ  VA  ++++++G P    +  +
Sbjct: 245 DLTYCYIKILQTNIALQTQIQKGANLTTINVLRDSLQYYVATVMDNEIQGQPTQKHKSGK 304

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL     RL+GK+GR RGNL GKRV+++ RTVI+PDP L++ ++ +P ++A  LT PE V
Sbjct: 305 PLKAIRSRLRGKEGRLRGNLMGKRVDFSARTVITPDPILRLDQLGVPQQIALNLTVPETV 364

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           +  NI+++R  +QNGP ++PGA+ I   D   ++   + +N+  + ++ G  V+RHL + 
Sbjct: 365 TAENIDEMRYLVQNGPTQWPGAKYIIRHD-ERQIDLSQLKNRSDLHIEPGFKVERHLRND 423

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D V+FNRQPSLH+MS+M HR +++P+ T R N SV  PYNADFDGDEMNMHVPQ+ E   
Sbjct: 424 DYVIFNRQPSLHKMSLMGHRVKVLPFSTFRLNLSVTTPYNADFDGDEMNMHVPQSYETMA 483

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           E   +M V N + +P++ + ++   QD L    L T KDTF ++     +  ++    D+
Sbjct: 484 EVKEIMAVPNQIVSPQSNKPVMGIVQDSLLGVMLFTLKDTFIEKELVMQLLMWINYEDDK 543

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
             LP PAILKP  LWTGKQ+FS++I P  N++  V    K+    N +  + GD  I + 
Sbjct: 544 --LPPPAILKPKPLWTGKQIFSLII-PDINIQK-VGERQKKGEPKNLIWDSAGDNNILM- 598

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
                      R  EL+ G L K+T+G+ +  G+  V+ ++ G + T   M+    +   
Sbjct: 599 -----------RKGELLCGNLTKSTIGSSS-GGMIHVIWKEKGPYVTRDFMSNTQLVINN 646

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNE----GKLQLKPGCDAA 616
           W+  HGF++G+ D+  KKE+  K    I E+  +   K+++  +    GKL+ +PG    
Sbjct: 647 WLHQHGFTVGVQDIIAKKEIVQK----IRESMVIFKKKVQQITQKAQMGKLKTQPGKGMM 702

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
            + EA +   LN+ R+D G   +  L   N    M   GSKGS +NISQ++ACVGQQ+V 
Sbjct: 703 DSFEASVNQCLNKARDDCGNMALADLQSWNRLKAMVYAGSKGSNLNISQIMACVGQQNVE 762

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF  RSLPHF +    P +KGFV N + +GL+  EFFFH MGGREGL+DTAVKT
Sbjct: 763 GKRIPFGFHRRSLPHFSKDDYGPESKGFVENCYLNGLTPQEFFFHAMGGREGLIDTAVKT 822

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           A+TGY+ RRLIKALED+ ++YD +VR +   I+QFLYG+DGM   ++E  S
Sbjct: 823 AETGYIQRRLIKALEDVMVKYDGTVRTSKEQIIQFLYGEDGMAGEHIEDLS 873



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/393 (31%), Positives = 204/393 (51%), Gaps = 43/393 (10%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+    V  G  +G+IGAQS+GEP TQMTL TFHFAGV++ N+T GVPR+KEIIN AK 
Sbjct: 1056 SRFEQALVNPGEMVGSIGAQSMGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKN 1115

Query: 955  ISTPIITAELE---CNDNENA------------ARVVKGRI-------EKTL-------- 984
            I TP +   LE     DN+ A            + VVK          E+T+        
Sbjct: 1116 IKTPSMKIYLEDENKQDNKTATMFGGRIEHTTLSHVVKSSAIYYDPDPERTIVKEDEALL 1175

Query: 985  -LGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIK- 1042
             L +   ++++    R+ S ++  ++++ +     +   ++++ I +    ++   H   
Sbjct: 1176 ALYRDVPTMEMSEGRRMTSWLLRFELDSDKMQFKDLTMSMIEQKIQENFNDQINVMHSDD 1235

Query: 1043 -----VLDFRKLEIFPPVDKSKIHFELYSLKN-VLPMVIVKGIKTVERVVIAEKEKEKRK 1096
                 +L  R  +I    D + +   L   ++ +   + +KG+  + +V   +   E   
Sbjct: 1236 NDEKLILRLRVNDIEDDEDDTTVCMFLKDFQDRLFNELALKGLHEIGKVTFTKYNDEVFD 1295

Query: 1097 VKENGEKKK----YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIID 1152
              E GE K+    + +  +G  LQ V+G EGI+  +T SN I E+ + LGIEA R+ +I+
Sbjct: 1296 -PETGEAKQDKDCWLIETDGVALQKVLGQEGINYRRTVSNDIIEILKVLGIEAVRMSLIN 1354

Query: 1153 EINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLF 1212
            E+   + ++G+ ++ RH+  L D+MT RG +  ITR GI ++D   L   SFE+T + L 
Sbjct: 1355 ELRFVLSSYGIYVNYRHLSTLCDVMTQRGILTAITRHGINRVDSGPLRKCSFEETVEILL 1414

Query: 1213 NASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             A+V    D ++G++E IIMG   P GTG  +I
Sbjct: 1415 EAAVFAETDHLKGITENIIMGQLAPYGTGSFEI 1447


>gi|256811204|ref|YP_003128573.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus fervens
           AG86]
 gi|256794404|gb|ACV25073.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus fervens
           AG86]
          Length = 891

 Score =  524 bits (1349), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 313/809 (38%), Positives = 472/809 (58%), Gaps = 58/809 (7%)

Query: 28  KAVKCPRCGYINGMVKKAVAVLGIIH-------DRSKVTESLQEFASAIT---HTKESKA 77
           KAV CP CG +     K   +L  +        ++ +V E + + AS +T   H  E K 
Sbjct: 101 KAV-CPHCGRVAISETKRKEILEKMEKLERDGGNKWEVCEEVYKEASKVTICPHCGEIKY 159

Query: 78  AVNV---ATY---------ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAV 122
            +      TY          L P +V  + +++ D DC +L L+    RPE +++T + V
Sbjct: 160 DIKFEKPTTYYRIDGNEEKTLTPSDVREILEKIPDEDCILLGLNPEVARPEWMVLTVLPV 219

Query: 123 PPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVA 182
           PP+ +RPS+ ++  + +E+D+T +L  II+ N  L++ +            W  LQ  V 
Sbjct: 220 PPVTVRPSITLETGERSEDDLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHVN 279

Query: 183 QYINSDVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKI 241
            Y +++  G+P +  +  RPL    QRLKGK+GRFR NL+GKRV ++ RTVISPDP L I
Sbjct: 280 TYFDNEAPGIPPAKHRSGRPLKTLAQRLKGKEGRFRYNLAGKRVNFSSRTVISPDPCLSI 339

Query: 242 TEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA----RMIRYPDGTARVLYG 297
            EV +P  +A+ LT PE+V+ +NIE++RQ ++NG +K+PG     R +   DG  +    
Sbjct: 340 NEVGVPEIVAKELTVPEKVTKYNIERIRQLLRNGSEKHPGVNYVIRKMIGRDGVEQEYKV 399

Query: 298 KF----RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNE 353
           K     ++  A  +K G IV+RHL DGD+VL+NRQPSLHRMSIM HR R++P+RT R N 
Sbjct: 400 KITESNKDFWAENIKEGDIVERHLMDGDIVLYNRQPSLHRMSIMAHRVRVLPYRTFRHNL 459

Query: 354 SVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSF 413
            VC PYNADFDGDEMN+HVPQ+EEAR EA  LM V+ ++ +P+ G  ++ +  DF++ ++
Sbjct: 460 CVCPPYNADFDGDEMNLHVPQSEEARAEAEALMLVEKHILSPRFGGPIIGAIHDFISGAY 519

Query: 414 LITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRV 473
           L+T      D A   L    + D +   D     +   V L++GK++FS  +    N+R 
Sbjct: 520 LLTSSYFTKDEATLILRSGGIKDELWEPD----KVENGVPLYSGKKIFSKALPKGLNLR- 574

Query: 474 YVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDG 533
                     Y  K+ R + DE  + E  CP D +V  ++ ELI G + K   G G + G
Sbjct: 575 ----------YKAKICR-KCDECKKEE--CPYDAYVVIKDGELIKGVIDKN--GYGAEAG 619

Query: 534 L-YSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENY 592
           L    +++++G  A    ++   K++ R +   GF+ GIDD    +E   +  K+++E  
Sbjct: 620 LILHTIVKEFGPEAGRKFLDSATKMAIRAVMLRGFTTGIDDEDLPEEALKEIEKVLNEAE 679

Query: 593 EVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMS 652
           E     I++Y  G+L+L PG D  ++ EA I ++L   R+ AG+     L   N  +IM+
Sbjct: 680 EKVKEIIEKYERGELELLPGLDLEESREAYINNVLREARDKAGEIAEKYLGLDNHAVIMA 739

Query: 653 QCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSG 712
             G++G+ +N++QM AC+GQQSV GRR   G+  R LPHF + + +  + GFV +S+  G
Sbjct: 740 VTGARGNILNLTQMAACLGQQSVRGRRIFRGYRGRVLPHFEKGSLDAKSHGFVRSSYKKG 799

Query: 713 LSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFL 772
           LS TEFFFH MGGREGLVD AV+TA +GYM RRLI AL+DL  ++D +VR++ G ++QF+
Sbjct: 800 LSPTEFFFHAMGGREGLVDQAVRTAQSGYMQRRLINALQDLKTEFDGTVRDSRGVMIQFM 859

Query: 773 YGDDGMDPANMEGKSGEPLNFDRLLMKVK 801
           YG+DG+DP  M    G+ +N DR++ KVK
Sbjct: 860 YGEDGVDP--MLADRGKSVNIDRIIDKVK 886


>gi|188532141|gb|ACD63082.1| RNA polymerase II largest subunit [Beta vulgaris]
          Length = 1012

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 296/720 (41%), Positives = 422/720 (58%), Gaps = 30/720 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D DC+++  +    RP+ +I+  + +PP  +RPSV+MD S  +E+D
Sbjct: 133 LSAEKVLSVLKRVSDEDCQLMGFNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDD 192

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++      A       + LQ  +A Y ++++ G P + Q + RP
Sbjct: 193 LTHQLAMIIRHNDNLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 252

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I E+ +P  +A  LTYPE V+
Sbjct: 253 IKSICTRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVT 312

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRY--PDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
            +NIE+L++ +  GP   PG    +Y   D   R+     +      L+ G  V+RHL D
Sbjct: 313 PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 372

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E  
Sbjct: 373 GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETX 432

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D   
Sbjct: 433 AEVXELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 492

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
           ++  P P ILKP  LWTGKQ+F+++I    N+   +  +          I T GD ++RI
Sbjct: 493 KI--PAPTILKPRPLWTGKQVFNLIIPKQINL---IRTSAWHSEAETGFI-TPGDTQVRI 546

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
           E              EL++G L K TLG      L  V+  + G  A    +     L  
Sbjct: 547 E------------RGELLAGTLCKKTLGTST-GSLIHVIWEEVGPDAARKFLGHTQWLVN 593

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
            W+  +GFSIGI D        +K  + IS+        IK   E +L+ +PG    ++ 
Sbjct: 594 YWLLQNGFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESF 653

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R
Sbjct: 654 ENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 713

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++T
Sbjct: 714 IPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 773

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 799
           GY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +       D L MK
Sbjct: 774 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK-----LDSLKMK 828


>gi|124485981|ref|YP_001030597.1| DNA-directed RNA polymerase subunit A' [Methanocorpusculum
           labreanum Z]
 gi|124363522|gb|ABN07330.1| DNA-directed RNA polymerase, subunit A' [Methanocorpusculum
           labreanum Z]
          Length = 889

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 299/748 (39%), Positives = 433/748 (57%), Gaps = 38/748 (5%)

Query: 60  ESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLI 116
           E    F   +T   E    V+ +   L   ++    +++ D D  +L +     RPE  +
Sbjct: 152 EKPTSFVEIVTEMGED-GKVHKSERKLTSADIRERLEKIPDDDLRLLGIDPEVARPEWTV 210

Query: 117 ITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWET 176
           +T + VPP+ +RPS+I++  Q +E+D+T +L  II+ N   ++              WE 
Sbjct: 211 LTVLPVPPVTVRPSIILENGQRSEDDLTHKLVDIIRINQRFKENQDAGAPQLIIEDLWEL 270

Query: 177 LQVEVAQYINSDVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISP 235
           LQ  V  Y++++V G P +  +  RPL    QRLKGK GRFRG+LSGKRV ++ RTVISP
Sbjct: 271 LQYHVTTYLDNEVAGCPPARHRSGRPLKTLSQRLKGKDGRFRGSLSGKRVNFSARTVISP 330

Query: 236 DPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYP-----GARMIRYPDG 290
           DPNL I EV IP+ +A  ++ P RV+  N+E +R  I+ GP +       GA  +  PDG
Sbjct: 331 DPNLSIGEVGIPLAIANEMSVPVRVTKQNLEDMRALIRIGPHRPTLRDPCGANYVNRPDG 390

Query: 291 T-ARVLYGKFRN--QLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
              R++ G+  N   +A  ++ G  +DR L DGD+VLFNRQPSLHRMSIM H  ++M  R
Sbjct: 391 RRIRLIAGEEGNCDTVAEMIEPGWKIDRQLRDGDIVLFNRQPSLHRMSIMSHHIKVMNGR 450

Query: 348 TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQD 407
           T R N +VC PYNADFDGDEMN+HVPQTEEAR EA LL+ VQ N+ +P+ G  ++    D
Sbjct: 451 TFRLNPAVCPPYNADFDGDEMNLHVPQTEEARAEAELLVAVQENILSPRFGGPIIGGLHD 510

Query: 408 FLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPA-ILKPVELWTGKQLFSVLIR 466
            ++  FL+T +  +Y ++ F  +  Y    M+   LP P  +   +  W+ KQ FS+++ 
Sbjct: 511 HISGIFLLTNQLKWYTKSEFLYLLKYTA--MEH--LPEPGKVENGIPYWSNKQAFSMILP 566

Query: 467 PHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATL 526
              NM  Y     +      K             T CPND FV   + ELISG + K ++
Sbjct: 567 KDVNM-FYKATCCRNCDPCTK------------NTFCPNDAFVRIVDGELISGTIDKKSV 613

Query: 527 GNGNKDG-LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQ-PKKELSDKK 584
           G    DG + + ++R +G       ++ L KLS R I  +GFS GI+D    K+E    +
Sbjct: 614 GA--MDGAILNRIIRLHGTQRAKEYIDDLTKLSIRAIMLYGFSYGINDTDLGKEEYKQIR 671

Query: 585 GKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW 644
             L +  ++V N +I  + +G L+  PG    +TLE  +   L + R+  G      L +
Sbjct: 672 DVLDTAEHDVAN-RINIFEQGHLEPMPGRTPEETLEMQVMKELGKARDRTGDIASRHLGF 730

Query: 645 RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 704
            NS ++M+  G++GS +NI+QM  C+GQQ+V G R   G+ DR+LPHF R  K   A GF
Sbjct: 731 ENSAVVMAVSGARGSMLNIAQMAGCIGQQAVRGERIVRGYEDRTLPHFKRSDKGADAHGF 790

Query: 705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
           V NS+ SGL+ TEFFFH +GGREGLVDTAV+T+ +GY+ RR+I AL+DL + YD +VR+ 
Sbjct: 791 VRNSYKSGLNPTEFFFHAIGGREGLVDTAVRTSQSGYLQRRMINALQDLKVAYDGTVRST 850

Query: 765 GGCIVQFLYGDDGMDPANMEGKSGEPLN 792
           GG I+QF+YG+DG DPA  +  SG P++
Sbjct: 851 GGKIIQFVYGEDGTDPA--KSASGLPVD 876


>gi|330507365|ref|YP_004383793.1| DNA-directed RNA polymerase subunit A' [Methanosaeta concilii GP6]
 gi|328928173|gb|AEB67975.1| DNA-directed RNA polymerase subunit A' [Methanosaeta concilii GP6]
          Length = 875

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 305/803 (37%), Positives = 447/803 (55%), Gaps = 63/803 (7%)

Query: 7   EALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFA 66
           E  R   +    V K    A K   CP CG     +K                     F 
Sbjct: 121 ELERLGQMTDDTVNKVFAEARKNKTCPYCGAPQQEIK---------------------FE 159

Query: 67  SAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVP 123
             +++ +E         + L   ++   F+++ D D +V+ +   + RPE +I+T + VP
Sbjct: 160 RPLSYIEEG--------HKLTASDIRDRFEKVPDEDIQVMGMNPATARPEWMILTVLPVP 211

Query: 124 PIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQ--ELVEANSAFKSLAGWETLQVEV 181
           P+ +RPS+ ++  Q +E+D+T +L  II+ N   Q+  E        + L  WE LQ  V
Sbjct: 212 PVTMRPSITLESGQRSEDDLTHKLVDIIRINQRFQENREAGAPQPIIEDL--WELLQYHV 269

Query: 182 AQYINSDVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLK 240
             ++++ V GVP +  +  RPL    QRLKGK+GRFRG+LSGKRV ++ RTVISPDPNL 
Sbjct: 270 TTFLDNTVSGVPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLS 329

Query: 241 ITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFR 300
           I EV +P+ +A  L+ P   +  N+E ++  ++ GPD++PG   +  PD     +  K  
Sbjct: 330 IGEVGVPMDIAMELSVPMIANSRNMEIVKTFVRRGPDRHPGVNYVTRPDQRRVKVTDKNC 389

Query: 301 NQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYN 360
            ++A ++  G  +DR L DGD+VLFNRQPSLHRMSIM HR ++MP++T R N +VC PYN
Sbjct: 390 EEVAEQIDIGWKIDRQLADGDIVLFNRQPSLHRMSIMSHRVKVMPYKTFRLNPAVCPPYN 449

Query: 361 ADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDT 420
           ADFDGDEMNMHVPQTEEAR EA +LM VQ N+ +P+ G  ++    D++T SFL+T    
Sbjct: 450 ADFDGDEMNMHVPQTEEARAEAEILMRVQENILSPRFGGPIIGGIHDYVTGSFLLTHGRK 509

Query: 421 FYD-RAAFSLMCCYMGDGMDRVDLPTP-AILKPVELWTGKQLFSVLIRPHANMRVYVNLT 478
             D R A  L+  +     D  +LP P   L     WTGKQ+FS LI P       ++L 
Sbjct: 510 PIDRRGAMELLKKF-----DITELPAPEGELNGEPYWTGKQIFS-LILPRG-----LDLN 558

Query: 479 VK-EKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
            K +  Y+  + + E          C ND +V  ++ +L  G +    +G   K  +   
Sbjct: 559 FKADFCYNCDVCKNE---------ECENDAYVVIQDGQLKIGTIDAKAVG-AFKGKITDR 608

Query: 538 LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNV 597
           ++++Y     S  ++R+ +L+ R I + GFS GIDD     E  D+  +      E    
Sbjct: 609 IIKEYSPSVASEFLDRMTRLALRGIMHAGFSFGIDDEDIPPEAVDQIEETTRTAREKAQQ 668

Query: 598 KIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSK 657
            I+ YN G+L+  PG    +TLE  I   L + R+ AGK     L   NS ++M+  G++
Sbjct: 669 LIEAYNAGELEPLPGRTLDETLEMRIMQTLGKARDTAGKIAGRYLGLDNSGVVMAVSGAR 728

Query: 658 GSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATE 717
           GS +N++QM ACVGQQSV G R   G+  R+LPHF R      A GFV +S+  GL+ TE
Sbjct: 729 GSMLNLTQMAACVGQQSVRGERIMRGYAGRTLPHFRRGDLGAEAHGFVESSYKDGLNPTE 788

Query: 718 FFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDG 777
           FFFH +GGREGLVDTA++T+ +GY+ RRL+ AL+DL ++YD +V+   G IVQF YG+DG
Sbjct: 789 FFFHAIGGREGLVDTAIRTSQSGYLQRRLVNALQDLEVKYDGTVKETRGMIVQFKYGEDG 848

Query: 778 MDPANMEGKSGEPLNFDRLLMKV 800
           +D +  +  S +  N  R++  V
Sbjct: 849 VDASRRDYASTD--NVKRIIKNV 869


>gi|386001093|ref|YP_005919392.1| DNA-directed RNA polymerase subunit A' [Methanosaeta harundinacea
           6Ac]
 gi|312183603|gb|ADQ42371.1| DNA-directed RNA polymerase subunit A' [Methanosaeta harundinacea
           6Ac]
 gi|357209149|gb|AET63769.1| DNA-directed RNA polymerase subunit A' [Methanosaeta harundinacea
           6Ac]
          Length = 878

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 298/789 (37%), Positives = 443/789 (56%), Gaps = 56/789 (7%)

Query: 18  IVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKA 77
           +V K  + A K   CP CG     +K                     F   + + +E   
Sbjct: 134 VVNKVFSEARKHKVCPYCGAPQQEIK---------------------FERPLAYVEEG-- 170

Query: 78  AVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMD 134
                 + L P ++   F+++ D D +V+ +   + RPE +++T + VPP+ +RPS+ ++
Sbjct: 171 ------HKLTPSDIRDRFEKIPDEDIKVMGMNPDTARPEWMLLTVLPVPPVTMRPSITLE 224

Query: 135 GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPF 194
             Q +E+D+T +L  II+ N   Q+              WE LQ  +  ++++ V GVP 
Sbjct: 225 SGQRSEDDLTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQYHITTFLDNTVSGVPP 284

Query: 195 S-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           +  +  RPL    QRLKGK+GRFRG+LSGKRV ++ RTVISPDPNL I EV +P+ +A  
Sbjct: 285 ARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSINEVGVPLEIAME 344

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIV 313
           L+ P  V+  NIE +R  ++ G DK+PG   +   DG    +  +   ++A +L+ G  V
Sbjct: 345 LSVPLVVNGRNIEVMRDFVRRGADKHPGVNYVTRADGRRVKVTDRNAEEVADQLEPGWKV 404

Query: 314 DRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVP 373
           DR L DGD+VLFNRQPSLHRMSIM HR  +MP +T R N +VC PYNADFDGDEMN+HVP
Sbjct: 405 DRQLMDGDIVLFNRQPSLHRMSIMSHRVIVMPHKTFRLNPAVCPPYNADFDGDEMNLHVP 464

Query: 374 QTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCY 433
           QTEEAR EA +LM VQ N+ +P+ G  ++    D++T +FL+T  D    R    +    
Sbjct: 465 QTEEARAEAEILMRVQENILSPRFGGPIIGGIHDYVTGNFLLTHGDRRISR----IEVME 520

Query: 434 MGDGMDRVDLPTPAILKPV--ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRT 491
           +   +  +++P P          WTGKQ+FS LI P       +NL  K     N     
Sbjct: 521 VLKKLHHLEIPEPVGWNEAGEPYWTGKQIFS-LILPRG-----LNLEFKASFCKNC---- 570

Query: 492 EGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCM 551
              +  + E  C +D +V  R+ ++++G +  A +G   K  +   ++++YG    +G +
Sbjct: 571 ---DSCKREA-CDDDAYVVIRDGKILTGTIDAAAVG-AFKGKITDRVIKEYGPTVGAGFI 625

Query: 552 NRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
           + + +++ R I   GFS GIDD    K+  D+   +++   E     I  Y  G+L+  P
Sbjct: 626 DGMTQMAIRGIMLAGFSFGIDDEDIPKDAEDQIEDVLNAARENVTKLIDAYKAGELEPLP 685

Query: 612 GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
           G    +TLE  I   L + R++AG      L   NS ++M+  G++GS +N++QM ACVG
Sbjct: 686 GRTLDETLEMRIMQTLGKARDNAGSIAGRYLGIDNSGVVMAVSGARGSMLNLTQMAACVG 745

Query: 672 QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
           QQSV G R   G+  R+LPHF R      A GFV +S+  GL+ TEFFFH +GGREGLVD
Sbjct: 746 QQSVRGERIRRGYEGRTLPHFRRGDLGAEAHGFVQSSYKEGLNPTEFFFHAIGGREGLVD 805

Query: 732 TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL 791
           TA++T+ +GY+ RRLI AL+DL +QYD +V+   G IVQF YG+DG+D +  +  S  P 
Sbjct: 806 TAIRTSQSGYLQRRLINALQDLEVQYDGTVKETRGIIVQFSYGEDGVDASKRDYAS--PE 863

Query: 792 NFDRLLMKV 800
           N  R++ +V
Sbjct: 864 NVHRIVQRV 872


>gi|402218945|gb|EJT99020.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731
           SS1]
          Length = 1770

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 290/754 (38%), Positives = 440/754 (58%), Gaps = 44/754 (5%)

Query: 35  CGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFL 94
           CG+I  +++K    L +++ + K  +  ++   A    +           +L       +
Sbjct: 176 CGHIQPLIRKDGLKLFLVYKKRKGDDDDEDVKLAQPEKR-----------LLTAAEAHSI 224

Query: 95  FKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRII 151
            +++  +D  ++ LSER   PE +I++ I VPP  +RPS++ D  +S E+D+T +L  I+
Sbjct: 225 LRKIPTSDLRLMGLSERYARPEWMILSVIPVPPPQVRPSIMSDSLRS-EDDLTYKLADIL 283

Query: 152 QTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRLK 210
           +T+A+L++   E   A       + LQ  VA Y+++++ G P +MQ + RP+     RLK
Sbjct: 284 KTSATLRKHDAEGAPAHVVSEIEQLLQFHVATYMDNEIAGQPRAMQKSGRPVKAIRSRLK 343

Query: 211 GKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQ 270
           GK+GR RGNL GKRV+++ RTVI+ DPN+ + EV +P  +A  LTYPERV+ +N+E+L +
Sbjct: 344 GKEGRLRGNLMGKRVDFSARTVITGDPNIALDEVGVPRSIAMTLTYPERVTKYNLERLTE 403

Query: 271 CIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPS 330
            ++NGP +YPGAR I    G    L  K  +   V L+ G +V+RHL DGD VLFNRQPS
Sbjct: 404 LVRNGPVEYPGARYIIRDTGERIDLRYKRGD---VSLQIGWVVERHLRDGDYVLFNRQPS 460

Query: 331 LHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQN 390
           LH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R E   +  V  
Sbjct: 461 LHKMSMMSHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELKEIAWVPR 520

Query: 391 NLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILK 450
            + +P+  + ++   QD L   + +T++D F D      +  ++ D    +  P P I+K
Sbjct: 521 QIVSPQANKPVMGIVQDTLCGIYKMTQRDIFLDWPLVQNILLWVPDWDGTI--PHPCIIK 578

Query: 451 PVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVY 510
           P  +W+GKQ+ +++I P       +NL     +  N +                ND  + 
Sbjct: 579 PKPMWSGKQIIALVI-PQG-----INLANGNLSIGNPI----------------NDDALI 616

Query: 511 FRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIG 570
             N E++ G   K  +G+ +  GL  V+ R+ G   T   +  +  +   W+ ++GFSIG
Sbjct: 617 IENGEIMMGIFNKGIVGS-SAGGLIHVVFRERGPEVTRDMIGGIQTVVNYWLFHNGFSIG 675

Query: 571 IDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRI 630
           I D  P K         I    E     ++E  +G L+ +PG    ++ EA +  ILN++
Sbjct: 676 IGDTVPDKPTEKSIMTNIETAKEDVRKVVEEAVKGLLKPRPGMTIRESFEASVNGILNQV 735

Query: 631 REDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLP 690
           R+ +GK+   SL   N+   M   GSKGS INISQM A VGQQ+V G+R P GF  R+LP
Sbjct: 736 RDKSGKSAQQSLKRDNNVKTMVTAGSKGSFINISQMSAMVGQQNVEGQRIPFGFKHRTLP 795

Query: 691 HFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKAL 750
           HF +    P ++GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+TGY+ RRL+KA+
Sbjct: 796 HFTKDDFSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAM 855

Query: 751 EDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           ED+ + YD ++RN+ G ++Q+ YG+DGMD A++E
Sbjct: 856 EDVMVAYDGTIRNSLGDVLQWTYGEDGMDAAHVE 889



 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 195/390 (50%), Gaps = 46/390 (11%)

Query: 901  RVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPII 960
            R  AG   G + AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEIIN A  + TP +
Sbjct: 1071 RAHAGEMCGVLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATHLKTPRL 1130

Query: 961  TAELECND--NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLC 1018
               L+ N   +  A++ V   +    L  + KS +I      ++  I  D + ++     
Sbjct: 1131 KVYLDPNVAISPEASKAVLTELAHATLRTITKSTEIYYDPEPSTTRIEEDRDFVEAFFSI 1190

Query: 1019 INADIVKESIVQTPKI-KLKQQHIKVLDFRKLEIFPPVDKSKIHFE-----LYSLKNVLP 1072
             + ++ ++  +Q+P + +L+    ++LD +KLE+     K    F+     ++S  N   
Sbjct: 1191 PDEEVEQKMNLQSPWLLRLELDRAQILD-KKLEMSYVASKISEAFQSDIFVIWSEDNAEK 1249

Query: 1073 MVI-----------------------------------VKGIKTVERVVIAEKEKEKRKV 1097
            ++I                                   ++G+  + R  + +  K     
Sbjct: 1250 LIIRCRVINNQSDKDESGNIEEDVFLRKLENTMLNSISLRGVDGISRAFMVQDSKTVLTP 1309

Query: 1098 KEN--GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEIN 1155
            + +   +K  + L  EG  L+ V+  EG+D  +T +N + E  + LGIEAAR  ++ E+ 
Sbjct: 1310 EGDYRTDKDDWMLETEGINLKKVLCVEGVDATRTTTNSLLEGFEVLGIEAARAVLLTELR 1369

Query: 1156 ETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAS 1215
            E ++  G  ++ RH+ LL D+MT+RG ++ ITR GI + D   LM  SFE+T + LF A+
Sbjct: 1370 EVLEFDGSYVNFRHLALLCDIMTYRGTLMSITRHGINRTDAGALMRCSFEETVEILFEAA 1429

Query: 1216 VNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
              G  D   G+++ I+ G   PLGTG   +
Sbjct: 1430 AMGEKDDCRGIAQNIMFGQVAPLGTGAFDV 1459


>gi|440636420|gb|ELR06339.1| DNA-directed RNA polymerase II subunit A [Geomyces destructans
           20631-21]
          Length = 1728

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 298/718 (41%), Positives = 426/718 (59%), Gaps = 36/718 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QS 138
           ++ P   L +F+ ++  D   L L+    RPE +IIT + VPP  +RPS+ MDG+     
Sbjct: 212 LITPEMALQVFRTISTDDIYDLGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGQGMR 271

Query: 139 NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQV 198
            E+D+T +L  II+ N +++Q   E + A  +L     LQ  VA Y+++D+ G P S+Q 
Sbjct: 272 GEDDLTYKLAEIIRANGNVRQAQSEGSPAHVALEFESLLQYHVATYMDNDIAGQPQSLQK 331

Query: 199 A-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYP 257
           + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL++ EV +P  +ARILTYP
Sbjct: 332 SGRPVKSIRARLKGKEGRLRSNLMGKRVDFSARTVITGDPNLELDEVGVPRSIARILTYP 391

Query: 258 ERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHL 317
           E V+ +NI KL Q +QNGP+ +PGA+ I   DG+ R+     +   A+ L+ G  V+RH+
Sbjct: 392 ETVTPYNIGKLHQLVQNGPNDHPGAKYIIRNDGS-RIDLRHHKRAGAISLEYGNKVERHI 450

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQTEE
Sbjct: 451 VDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEE 510

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMG 435
            R E   L  V  N+ +P+    L+   QD L   + +TR+D F  +      L+     
Sbjct: 511 TRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKLTRRDVFLTKETMMNVLLWVPSW 570

Query: 436 DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
           DG+    +P PAI+KP   WTGKQL S++I    N+                   T  D 
Sbjct: 571 DGV----IPQPAIIKPRPRWTGKQLISMIIPKEVNLH------------------TANDN 608

Query: 496 EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
             R +    +DG +     EL+ G + K  +G     G+  ++  + G            
Sbjct: 609 --REDAPLKDDGLL-ISEGELLFGLITKKVVG-ATSGGVVHIIFNELGWLEARNFFTGCQ 664

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
            +   W+ ++GFSIGI D  P K   DK    + E  ++ +  + E    KL+  PG + 
Sbjct: 665 TVVNYWLYHNGFSIGIGDTIPDKATIDKIEGAVKEQKDIVDGLVLEATTNKLESLPGMNV 724

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            +T E++++  LN  R+ AG     SL   N+ +IM++ GSKGS INISQM A VGQQSV
Sbjct: 725 RETFESLVSKALNTARDKAGTRTEQSLKDINNAVIMARSGSKGSTINISQMTALVGQQSV 784

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R P GF  R+LPHF +    P ++GFV NS+  GL+ +EFFFH M GREGL+DTAVK
Sbjct: 785 EGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVK 844

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
           TA+TGY+ RRL+KALED+ ++YD +VRN+ G IVQF+YG+DG+D   +E +  + +N 
Sbjct: 845 TAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIVQFIYGEDGLDAVYIEKQRVDSINM 902



 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/432 (30%), Positives = 212/432 (49%), Gaps = 54/432 (12%)

Query: 867  KSQILEEVTHKTSGITEK----QLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQ 922
            K+Q+ + +  K   I +K      +  I    SR+    V  G  +G + AQSIGEP TQ
Sbjct: 1035 KAQLRQRLAFKRVAIHQKLSKLAFDKAIGELESRFTHALVNPGEMVGILAAQSIGEPATQ 1094

Query: 923  MTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELEC-NDNENAARVVKGRIE 981
            MTL TFHFAGV+S N+T GVPR+KEI+N A  I TP +    E  N ++  A++++  +E
Sbjct: 1095 MTLNTFHFAGVSSKNVTLGVPRLKEILNIATNIKTPSMVVYQEGDNPSQETAKLLRSAVE 1154

Query: 982  KTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINAD------------------- 1022
             T L  V  + +I       +  I  D + + D+H  +  +                   
Sbjct: 1155 HTNLRSVTAATEIYYDPDPENTTIEQDQDMV-DSHYMVPDENSESHDSLSRWLLRIILDR 1213

Query: 1023 ---IVKESIVQTPKIKLKQQHIKVLDF------------------RKLEIFPPVDKSKIH 1061
               + K   V    +++K+++ K L+                   R    +   D S+  
Sbjct: 1214 QKMLDKGLNVDDVAVRIKEEYPKDLNVIFSDNNAEELVIRCRMITRMEGKYEDGDNSEQD 1273

Query: 1062 FELYSLKN-VLPMVIVKGIKTVERVVIAEK----EKEKRKV---KENGEKKKYRLLVEGT 1113
              L  L+N VL  + ++G+  ++R  + ++    E E   +   K++ + +++ L   GT
Sbjct: 1274 VSLKKLENHVLDSLTLRGVPGIDRAFLNKETKLVETEDGALIASKDDPKCQEWYLDTSGT 1333

Query: 1114 GLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1173
             L AV+   G+D  +T SNH  ++ +  GIEA R  ++ E+ + +   G  ++ RH+ LL
Sbjct: 1334 ALAAVLSVPGVDTTRTYSNHFVQILEVFGIEAVRSALMRELTQVLAFDGSYVNHRHLALL 1393

Query: 1174 ADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMG 1233
             D+MT RG ++ ITR GI + D   LM  SFE+T + L  A+  G  D   GVSE +I+G
Sbjct: 1394 VDVMTSRGHLMAITRHGINRADTGALMRCSFEETVEILLEAAAVGELDDCRGVSENVILG 1453

Query: 1234 IPMPLGTGILKI 1245
               PLGTG +++
Sbjct: 1454 QLAPLGTGEMEL 1465


>gi|326498629|dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1859

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 304/723 (42%), Positives = 426/723 (58%), Gaps = 34/723 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           IL+   VL + KR++D DC +L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+
Sbjct: 211 ILSAERVLNVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSED 270

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VAR 200
           D+T +L  II+ N +L+++      A       + LQ  +A Y ++D+ G P + Q   R
Sbjct: 271 DLTHQLAMIIRHNENLRKQERNGAPAHIITEFAQLLQFHIATYFDNDLPGQPRATQRSGR 330

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           P+     RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I ++ +P  +A  LTYPE V
Sbjct: 331 PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETV 390

Query: 261 SDHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRH 316
           + +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RH
Sbjct: 391 TPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLEL--GYKVERH 448

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           L DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ 
Sbjct: 449 LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 508

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           E R E L LM V   + +P+    ++   QD L     IT++DT  ++  F  +  +  D
Sbjct: 509 ETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWED 568

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
              +V  P PAIL+P  +WTGKQ+F+++I    N+   +  +       +  I T GD  
Sbjct: 569 FDGKV--PAPAILRPRPIWTGKQVFNLIIPKLINL---IRFSAWHAETESGFI-TPGDTM 622

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
           +RIE              EL+SG L K TLG      L  V+  + G  A    +     
Sbjct: 623 VRIE------------KGELLSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQW 669

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           L   W+  +GFSIGI D        +K  + I          IK+  E  L+ +PG    
Sbjct: 670 LVNYWLLQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGRTMM 729

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           ++ E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V 
Sbjct: 730 ESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 789

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF+DR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT
Sbjct: 790 GKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 849

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           ++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +       D L
Sbjct: 850 SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ-----KLDSL 904

Query: 797 LMK 799
            MK
Sbjct: 905 KMK 907



 Score =  191 bits (484), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 129/409 (31%), Positives = 204/409 (49%), Gaps = 53/409 (12%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T++  E  I    SR+    V  G  IG + AQSIGEP TQMTL TFH+AGV++ N+T 
Sbjct: 1056 LTKESFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1115

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR++EIIN AK+I TP ++  L  E +  +  A+ V+  +E T L  V  + +I    
Sbjct: 1116 GVPRLREIINVAKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDP 1175

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKS 1058
                 +I  D+E ++  +   + DI  + I  +P +   + + +++  +KL +    +K 
Sbjct: 1176 DPLGTIIEEDVEFVRSYYEMPDEDIDPDKI--SPWLLRIELNREMMVDKKLSMADIAEKI 1233

Query: 1059 KIHFE-----LYSLKNVLPMVI-------------------------------------V 1076
               F+     +++  N   +++                                     +
Sbjct: 1234 NHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMAL 1293

Query: 1077 KGIKTVERVVI----AEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSN 1132
            +GI  + +V I      K  E    K + E   + L  EG  L AVM  E +D  +T SN
Sbjct: 1294 RGIPDINKVFIKYGKVNKFDESEGFKPDNE---WMLDTEGVNLLAVMCHEDVDSTRTTSN 1350

Query: 1133 HIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQ 1192
            H+ EV + LGIEA R  ++DE+   +   G  ++ RH+ +L D MT+RG ++ ITR GI 
Sbjct: 1351 HLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1410

Query: 1193 KMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            + D   LM  SFE+T D L +A+V    D + GV+E I++G   P+GTG
Sbjct: 1411 RNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTG 1459


>gi|145351142|ref|XP_001419944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580177|gb|ABO98237.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1646

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 307/751 (40%), Positives = 446/751 (59%), Gaps = 36/751 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           I+     L + K ++D DC  L L     RP+  I+  + VPP  +RPSV  D S  +E+
Sbjct: 188 IVTAERALQILKAISDEDCRALGLDPEHARPDWFILQVMPVPPPPVRPSVSFDASTRSED 247

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKS--LAGWETLQVEVAQYINSDVRGVPFSM-QV 198
           D+T +L  I++TN +L+++  E N A +   L   E LQ  +  ++++ V G+P ++ + 
Sbjct: 248 DLTVKLMEIVRTNKNLERQ--EQNGAPQHVILEFTELLQYHIMTFMDNTVAGMPRALTRS 305

Query: 199 ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            R +    +RLKGK GR RGNL GKRV+++ RTVI+PDPNL + E+ +P  +A  +TYPE
Sbjct: 306 GRSIKSISERLKGKAGRIRGNLMGKRVDFSARTVITPDPNLMLDELGVPWSIALNMTYPE 365

Query: 259 RVSDHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
            V+ +NI++L++ ++NGP   PG   AR I   DG  R+     +      L+ G  V+R
Sbjct: 366 TVTPYNIDRLQRLVENGPHPPPGETGARYIIREDG-QRLDLRFLKKSSEKRLEYGYKVER 424

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           H+ +GDVVLFNRQPSLH+MSIM HR RIMP+ T R N SV  PYNADFDGDEMNMH+PQ+
Sbjct: 425 HMVNGDVVLFNRQPSLHKMSIMGHRVRIMPYSTFRLNLSVTPPYNADFDGDEMNMHLPQS 484

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
            E R E   LM V   + +P+  + ++A  QD L    LIT++DTF  +  F  +  ++ 
Sbjct: 485 YETRAEVKELMMVPKMIVSPQANKPVMAIVQDTLLGCRLITKRDTFITKDVFMNIIMWLE 544

Query: 436 DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
           D   +V  P PAILKP  LWTGKQ+FS+++ P  N+ +  +   K+   S+ +  +  D 
Sbjct: 545 DWDGKV--PKPAILKPQPLWTGKQVFSMML-PKVNL-LRTSAWAKD---SDDMAFSVDDT 597

Query: 496 EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
            +RIE              EL++G L K T+G+G   GL  V   ++G  A  G +++  
Sbjct: 598 GVRIE------------QGELLTGTLCKKTMGSGGG-GLIHVTWEEWGPIAARGLISQTQ 644

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
            L   W+ +HGF++GI D     E        I++        IK     +L+L+PG   
Sbjct: 645 TLVNYWVLHHGFTVGIADTIADDETMFSINNTITKAKADVKEVIKLAQNNELELQPGMTM 704

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            Q+ E  +  ILN+ R++AG +   SL   N+  +M   GSKGS +NISQM+ACVGQQ+V
Sbjct: 705 QQSFEQKVNQILNKARDNAGNSAQNSLMDTNNVKMMVTAGSKGSFLNISQMIACVGQQNV 764

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R P GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVK
Sbjct: 765 EGKRIPYGFKGRTLPHFSKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 824

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFD- 794
           T++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +S + L F  
Sbjct: 825 TSETGYIQRRLVKAMEDVVVKYDGTVRNSVGDVIQFLYGEDGMDATMIESQSIDTLRFSV 884

Query: 795 ---RLLMKVKATCPPAGQRYLSPQQVSEIVE 822
                   +    P     +LS +Q SE+  
Sbjct: 885 KEFAAKFHIDPDVPGFNNGWLSEEQASELAH 915



 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 146/481 (30%), Positives = 228/481 (47%), Gaps = 63/481 (13%)

Query: 815  QQVSEIVEKQLAAYGKESCS-EAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEE 873
            + V+E++ K +   G +  S EA  N    FF   +  L  K             ++L+E
Sbjct: 984  ESVAELLPKLIVVPGTDPLSVEAQRNGTMLFFAHVRANLAAK-------------RVLKE 1030

Query: 874  VTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGV 933
              HK   +T    +  I    SR+++     G  IG + AQSIGEP TQMTL TFHFAGV
Sbjct: 1031 --HK---LTRAGFDWVIGEIESRFKMALAPPGDGIGTVAAQSIGEPATQMTLNTFHFAGV 1085

Query: 934  ASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKS 991
            ++ N+T GVPR+KEIIN AK I TP +T  L  E   +   A+  +  +E T L  VA  
Sbjct: 1086 SAKNVTLGVPRLKEIINIAKSIKTPSLTIALKPELAGDRTRAKDCQASLEYTTLHSVAAV 1145

Query: 992  IKI----------------------------VMTSRLASIV--IALDMETIQDAHLCIN- 1020
             ++                            V  SR++  +  I L+ E + D  L +  
Sbjct: 1146 TEVHYDPDPTDTVIEEDREFVRAYYEMPDEDVDPSRMSPWLLRIELNREMMVDKKLLMAD 1205

Query: 1021 -ADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP----VDKSKIHFELYSLK---NVLP 1072
             A+ + E             + + L  R + I  P     + +    E++  +    +L 
Sbjct: 1206 VAERINEDFAGDLSCIFNDDNSEKLVLR-IRIMNPEGVKYEDASTEDEVFLKRLETQMLS 1264

Query: 1073 MVIVKGIKTVERVVIAEKEKEKRKVKENGEKK--KYRLLVEGTGLQAVMGAEGIDGCKTK 1130
             + ++GI  +++V I E ++     K    +K  ++ L  EG  L  VM    +D  +T 
Sbjct: 1265 NLALRGIPDIKKVFIREAKQNAINSKTELFEKTTEWMLDTEGVNLLEVMAHPDVDFTRTT 1324

Query: 1131 SNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFG 1190
            SNH+ EV Q LGIEA R  ++ E+   ++  G  ++ RH+ +L ++MT+RG ++ ITR G
Sbjct: 1325 SNHLIEVIQVLGIEAVRNTLLRELRGVIEFDGSYVNYRHLAILVEVMTYRGHLMSITRHG 1384

Query: 1191 IQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDA 1250
            I +++   LM  SFE+T D L  AS     D + G SE I++G   P+GTG  K+   D 
Sbjct: 1385 INRVETGPLMRCSFEETVDILMEASAFSERDNMTGPSENIMLGQFCPIGTGEFKLHLNDE 1444

Query: 1251 V 1251
            +
Sbjct: 1445 L 1445


>gi|188532143|gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum demersum]
          Length = 1010

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 302/722 (41%), Positives = 426/722 (59%), Gaps = 34/722 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D DC +L  +    RP+ +I+  + +PP  +RPSV+MD S  +E+D
Sbjct: 131 LSAERVLSILKRISDEDCVLLGFNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDD 190

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++      A       + LQ  +A Y ++++   P + Q + RP
Sbjct: 191 LTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPXQPRATQRSGRP 250

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  LTYPE V+
Sbjct: 251 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVT 310

Query: 262 DHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHL 317
            +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RHL
Sbjct: 311 PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL--GYKVERHL 368

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E
Sbjct: 369 NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 428

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
            R E L LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D 
Sbjct: 429 TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 488

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
             ++  P P ILKP  LWTGKQ+F+++I    N+   +  +          I T GD ++
Sbjct: 489 DGKI--PAPTILKPRPLWTGKQVFNLIIPKQINL---IRTSAWHSEAETGFI-TPGDTQV 542

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
           RIE              EL++G L K TLG      L  V+  + G  A    +     L
Sbjct: 543 RIE------------RGELLAGTLCKKTLGTST-GSLIHVIWEEVGPDAARKFLGHTQWL 589

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
              W+  +GFSIGI D        +K  + IS+        IK   E +L+ +PG    +
Sbjct: 590 VNYWLLQNGFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMME 649

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           + E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G
Sbjct: 650 SFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 709

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT+
Sbjct: 710 KRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 769

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +       D L 
Sbjct: 770 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK-----LDSLK 824

Query: 798 MK 799
           MK
Sbjct: 825 MK 826


>gi|294876122|ref|XP_002767562.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
            marinus ATCC 50983]
 gi|239869222|gb|EER00280.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
            marinus ATCC 50983]
          Length = 1667

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 316/953 (33%), Positives = 512/953 (53%), Gaps = 89/953 (9%)

Query: 135  GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPF 194
            G+   E+D+T +L+ I++ N  L+++L     +         LQ  +    ++++ G+P 
Sbjct: 279  GTDRAEDDLTLKLQDIVKVNQMLKRQLETGAGSHIVNEIAALLQWHLYTLQDNNIPGMPE 338

Query: 195  SM-QVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
            +  +  + +     RLKGK+GR RGNL GKRV+++ RTVI+ DPN+ I +V +P  +A  
Sbjct: 339  AQTKSKKAIKSIRSRLKGKEGRIRGNLMGKRVDFSARTVITGDPNIDIDQVGVPKSIAMN 398

Query: 254  LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCI 312
            LT+ ERV+  N  K+R+ +  GP  +PGA+ I   D +   L  +F  Q   + L+ G  
Sbjct: 399  LTFAERVTPLNYAKMRELVMRGPTSWPGAKRIIRDDNSCIDL--RFTKQAQDIVLRYGWR 456

Query: 313  VDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHV 372
            V+RH++D D+V+FNRQPSLH+MS+M HRA+I+P+ T R N SV +PYNADFDGDEMNMH+
Sbjct: 457  VERHMQDNDLVIFNRQPSLHKMSMMGHRAKILPFSTFRLNLSVTSPYNADFDGDEMNMHL 516

Query: 373  PQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDR-AAFSLMC 431
             Q+ E R E   +M V   + +P+    ++   QD L +S L+T++DTF ++     L+ 
Sbjct: 517  AQSHETRAEIRNIMMVPRQVVSPQGNRPVMGIVQDSLLASTLLTKRDTFIEKDMCMQLLM 576

Query: 432  CYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRT 491
              +    D  ++P P ILKP  LW+GKQLFS+L+ P  +++    +  K +         
Sbjct: 577  WLLPASWDGGNMPMPCILKPRPLWSGKQLFSMLL-PKISLQKDAGIASKNR--------- 626

Query: 492  EGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCM 551
             GD+     + C     V  +  E++SG + K T+G  +  GL  +   DYG   T   +
Sbjct: 627  -GDDPWFSRSDCR----VIIQEGEIMSGVICKKTVG-ASSGGLIHITWLDYGPERTKQFI 680

Query: 552  NRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
              + +L   W+ +HGF++G  D+        K    +++        + +   G+L+ +P
Sbjct: 681  GGIQRLVNFWLLHHGFTVGCADIVANDGTMQKVADTLAQAKRDVRKLVLDAQRGRLEAQP 740

Query: 612  GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
            G    Q+ EA +   LN+ RED+G+    SL  +N+ + M   GSKG+PINI+Q++ACVG
Sbjct: 741  GKSLQQSFEARVNQRLNQAREDSGRLAADSLDDKNNIIAMVDSGSKGNPINIAQIIACVG 800

Query: 672  QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
            QQ+V G+R P GF DR+LPHF +    P ++GFV NS+ +GL+  EFFFH MGGREG++D
Sbjct: 801  QQNVEGKRIPTGFRDRTLPHFTKDDFGPESRGFVENSYLAGLTPQEFFFHAMGGREGIID 860

Query: 732  TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGE-- 789
            TA KTA+TGY+ RRLIK++E + ++YD SVRN    +VQFLYG+DGM    +E +  E  
Sbjct: 861  TACKTAETGYIQRRLIKSMESIKVRYDGSVRNEMDEVVQFLYGEDGMTAEYIEDQDIELM 920

Query: 790  PLNFDRL--LMKVKATCPPAGQRYLSPQQVSEIVE-------------KQLAAYGKESCS 834
             ++ +RL  + K     P  G+ ++  ++V   +              + L    +  C+
Sbjct: 921  KISHERLAAIAKHDYLNPDYGRGWIKDEKVRSNIRMNHEVQAVLDREFENLKEMKRLLCT 980

Query: 835  EAF----------------LNSLRKFFEGQQD------------KLDKKIKFVEDI-GWD 865
            + +                ++     F  ++D            K+++ +  +  I G  
Sbjct: 981  KVYKDGESRQHIPINVRRLIDQCHYLFPAEEDPDVFYPPQEVVQKVEETLDRLRVIRGLT 1040

Query: 866  DKSQILEEVTHKTSGITEKQLEVFIQT--CFSRYRVKRVEAGTAIGAI----------GA 913
            D   +  E  H  + + +  L   + +     R R+ +      +G +            
Sbjct: 1041 DDQVLGWEAQHNATVVLQAHLRYHLASRKLLERDRLGQRAVDWLLGEVEQRFEKSLVAAG 1100

Query: 914  QSIG--------EPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELE 965
            +S+G        EP TQMTL TFHFAGV S N+T GVPR+KEIIN AK + TP +T  L 
Sbjct: 1101 ESVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEIINVAKNLKTPSMTVYLH 1160

Query: 966  CN--DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAH 1016
             +   ++  A+ V+  +E T LG++    +I+    + + ++  D + +++ +
Sbjct: 1161 PDYASDDAKAKQVQSELEHTSLGKITSYTQILFDPDVRTSILEEDRQLVEEYY 1213



 Score =  100 bits (248), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 97/175 (55%), Gaps = 2/175 (1%)

Query: 1069 NVLPMVIVKGIKTVERVVIAEKEKEK--RKVKENGEKKKYRLLVEGTGLQAVMGAEGIDG 1126
            ++L  + +KGI  V +  + +  + +    V      +++ L  +G  L+ V+  E +D 
Sbjct: 1322 SLLSDLTLKGIPGVTKCYMRQDNRVQYSSDVGTFARSREWVLDTDGCNLEQVLTMEAVDS 1381

Query: 1127 CKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGI 1186
             +T SN I E+   LGIEA R  +++E+ + +   G  ++ RHM +L D M  +G ++ I
Sbjct: 1382 TRTFSNDIVEILNVLGIEACRKALLNELRQVISFDGSYVNYRHMSVLCDTMCQKGHLMSI 1441

Query: 1187 TRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            TR GI ++++  LM +SFE+  + L +A+     D + GVSE I++G   P+GT 
Sbjct: 1442 TRHGINRVERGPLMRSSFEEMVEMLMDAACYAETDHMRGVSENIMLGQLAPIGTA 1496


>gi|12642616|gb|AAK00312.1|AF315822_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monoblepharis
           macrandra]
          Length = 1603

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 295/732 (40%), Positives = 433/732 (59%), Gaps = 36/732 (4%)

Query: 63  QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITN 119
           +E  + + H  +     ++A   L P  V  +  +++D DC  L L+    RPE +IIT 
Sbjct: 114 KEGLTLLAHYAKETEDADLAPRPLLPDQVQKILLQISDADCVSLGLNPEWSRPEWMIITV 173

Query: 120 IAVPPIAIRPSVIMDGSQ-SNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQ 178
           + VPP  +RPSV+ DG+   +++D+T +L  I++ NASL++   +          W+ LQ
Sbjct: 174 LPVPPPQVRPSVVGDGTGLRSQDDLTYKLADILKANASLKRHEQDGGPTHVVNEFWDLLQ 233

Query: 179 VEVAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDP 237
             VA  +++ + G+P + Q   RP+ G  QRLKGK+GR RGNL GKRV+++ RTVI+ DP
Sbjct: 234 YHVATMMDNQISGLPVAQQKGGRPIKGIRQRLKGKEGRLRGNLMGKRVDFSARTVITGDP 293

Query: 238 NLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA-RMIRYPDGTARVLY 296
           N+ I EV +P  + R LT+PE V+D+N + L++ + NG ++YPGA R+IR       + +
Sbjct: 294 NISIDEVGVPRSICRNLTFPEIVNDYNRDHLQKLVANGTNEYPGANRVIRANGDIVSLKH 353

Query: 297 GKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 356
                +  + +  G  V+RHL DGD ++FNRQPSLH+MS+M H+ R+MP+ T R N SV 
Sbjct: 354 TAGSGETLLNI--GDRVERHLVDGDYIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVT 411

Query: 357 NPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
           +PYNADFDGDEMN+H PQ+ E R E + +M V   + +PK+ + ++   QD L      T
Sbjct: 412 SPYNADFDGDEMNLHAPQSYETRAEIMEIMRVPRQIISPKHNQPVMGIVQDTLCGIRKFT 471

Query: 417 RKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
            +D F  R     +  ++ D  D V +P PAI+KPV LWTGKQ+ S+ I         +N
Sbjct: 472 IRDNFLSRDMVMNILMWVED-WDGV-IPLPAIVKPVPLWTGKQMMSLAIPD-------IN 522

Query: 477 LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
           L     T+ +     +GD       M   D  V      ++SG + K T+G+ +  G+  
Sbjct: 523 LVGFSATHPDD---EKGD-------MSVGDTKVIIEGGTILSGTMCKKTVGS-SAGGVIH 571

Query: 537 VLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPK----KELSDKKGKLISENY 592
            ++ ++G  A     N   K+   W+ ++GFS+GI D        + ++D   K  ++  
Sbjct: 572 TIMNEHGPDAAKKFFNGTQKIVNYWLLHNGFSVGIGDTIADGVTMQSITDTIKKAKADVA 631

Query: 593 EVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMS 652
           E+    IK     KL  +PG    +T E+ +  +LN+ R+DAGK    SL   N+   M 
Sbjct: 632 EI----IKNAQANKLDAEPGMTVRETFESKVNKVLNKARDDAGKKAEKSLKIYNNVKQMV 687

Query: 653 QCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSG 712
             GSKGS INISQM ACVGQQ+V G+R P GF  R+LPHF +    P ++GFV NS+  G
Sbjct: 688 IAGSKGSFINISQMTACVGQQNVEGKRIPYGFRYRTLPHFTKDDHSPESRGFVENSYLRG 747

Query: 713 LSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFL 772
           LS  EFFFH MGGREGL+DTAVKTA+TGY+ RRL+KALED+ ++YD +VRN+ G +VQF+
Sbjct: 748 LSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGHVVQFV 807

Query: 773 YGDDGMDPANME 784
           YG+DGMD   +E
Sbjct: 808 YGEDGMDATGVE 819



 Score =  175 bits (444), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/396 (31%), Positives = 194/396 (48%), Gaps = 51/396 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR++  +V     +G I AQSIGEP TQMTL TFHFAGV S N+T GVPR+KEIIN A  
Sbjct: 997  SRFKAAKVNPAEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEIINVATN 1056

Query: 955  ISTPIITAELECNDNENA-----ARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDM 1009
            + TP +   L+ N +        A+ ++ +IE T LG++A   ++     L + V+  D 
Sbjct: 1057 LRTPSLLVCLKANKDGRPLDLPQAKKIQAKIEYTTLGKLAVQSEVYYDPDLRNSVVEADR 1116

Query: 1010 E------TIQDAHLC------------------INADIVKESIVQTPKIKLKQQHIK--- 1042
            +       I+DA                     I+ DI    I +  KI  + Q +    
Sbjct: 1117 DWLDAYFEIEDADALQARLSSWALRIEIDRGRRIDKDISMSEIAR--KISSQYQDVLHVM 1174

Query: 1043 -----------VLDFRKLEIFPPVDKSKIHFELYSLKNV----LPMVIVKGIKTVERVVI 1087
                       V+   + E      K     E   L++V    +  + + GI  + RV I
Sbjct: 1175 HSDDNAPSLALVIRINQDEAMQESLKESAQTEDVILRDVESQLMASLALGGITNIRRVYI 1234

Query: 1088 AEKEKEKRKVKENG--EKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
            +E++   +        + +++ L  +G  L+ VM  E +D  +T SN   E+   LGIEA
Sbjct: 1235 SEQKVAVQNTATGAIEQAQEHILETDGINLREVMAVEEVDFTRTYSNAPLEIYAVLGIEA 1294

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
             R  ++ EI + ++  G  ++ RH+ LL D+M  +G ++ ITR GI + +   L  +SFE
Sbjct: 1295 GRAALLKEIRKVIEFDGSYVNYRHLALLVDVMCQKGGLMSITRHGINRTENGALARSSFE 1354

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            +T + L +A+ +G  D   GVSE II+G   PLGTG
Sbjct: 1355 ETVEILMDAAGSGETDICRGVSENIILGQLAPLGTG 1390


>gi|120561219|gb|ABM26995.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
          Length = 1018

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 297/717 (41%), Positives = 430/717 (59%), Gaps = 24/717 (3%)

Query: 75  SKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSV 131
           S+ A+      L P  V  + KR+TD D E + LS    RP+ +IIT + VPP  +RPS+
Sbjct: 124 SEGAMPEGKQPLTPSQVHQILKRITDEDLEDMGLSAEFARPDWMIITVLPVPPPPVRPSI 183

Query: 132 IMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRG 191
            MDGS   E+D+T +L  I++ N ++++   E           + LQ  VA Y+++D+ G
Sbjct: 184 QMDGSSRGEDDLTHKLADILKANVNVKRCETEGAPVHVIDEFEQLLQFHVATYMDNDIAG 243

Query: 192 VPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRM 250
            P ++Q + RPL     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL I EV +P  +
Sbjct: 244 QPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEVGVPRSI 303

Query: 251 ARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSG 310
           AR LT+PE V+ +NIE++++ ++NGP+++PGA+ +   D   R+     +    + L+ G
Sbjct: 304 ARNLTFPEMVTPYNIERMQELVRNGPNEHPGAKYV-IRDTGERIDLRYHKRAGDIPLQYG 362

Query: 311 CIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNM 370
             V+RHL DGDVV+FNRQPSLH+MS+M H+ R+MP+ T R N SV +PYNADFDGDEMNM
Sbjct: 363 YKVERHLNDGDVVIFNRQPSLHKMSMMGHKVRVMPYSTFRLNLSVTSPYNADFDGDEMNM 422

Query: 371 HVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLM 430
           HVPQ+EE   E   +  V   + +P++ + ++   QD L      T++D+F D+A    +
Sbjct: 423 HVPQSEETNAEIKEICMVPKQIISPQSNKPVMGIVQDTLCGIRKFTKRDSFVDKALVMNI 482

Query: 431 CCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIR 490
             ++ D  D V +PTPAILKP  LWTGKQL ++++  + N   Y +              
Sbjct: 483 LMWVAD-WDGV-IPTPAILKPQPLWTGKQLVTMIVPKNINCITYHS-------------- 526

Query: 491 TEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGC 550
              D+E     + P D  V   N ELISG + K T+G  N  G   V + ++G       
Sbjct: 527 AHPDDEK--SDISPGDTKVVVENGELISGIVCKKTVGASN-GGWVHVAMNEHGPEVAKRF 583

Query: 551 MNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLK 610
            +    +   W+  HGFSIGI D     + ++   + I+   +  +  I    +  L+  
Sbjct: 584 FSGAQAVVNYWLLQHGFSIGIGDTIADGKTTEHITETINSAKQRVSEIILSAQQDTLECA 643

Query: 611 PGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACV 670
           PG    +T E  +   LNR R+ +G++   SL   N+   M   GSKGS INISQM ACV
Sbjct: 644 PGMTIRETFENKVNRELNRARDHSGRSAEKSLKEENNVKQMVVSGSKGSFINISQMSACV 703

Query: 671 GQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLV 730
           GQQ+V G+R P GF  R+LPHF +    P ++GFV NS+  GL+  EF+FH MGGREGL+
Sbjct: 704 GQQNVEGKRIPFGFKFRTLPHFSKDDYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLI 763

Query: 731 DTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           DTAVKTA+TGY+ RRL+KALED+ ++YD +VRN+ G I+QF YG+DGMD  ++E ++
Sbjct: 764 DTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGNIIQFCYGEDGMDGCHVEKQT 820


>gi|120561229|gb|ABM27000.1| RNA polymerase II largest subunit, partial [Blastocladiella
           emersonii]
          Length = 1005

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 306/721 (42%), Positives = 428/721 (59%), Gaps = 34/721 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  VL + KR+ D DCE L L+    RPE +I+T   VPP  +RPS+  DG+   E+D
Sbjct: 123 LTPDQVLQILKRIPDEDCEALGLNPEYARPEWMILTVFPVPPPPVRPSIRSDGAARGEDD 182

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  I++ NA++ Q++ + ++  +     E LQ   A  +++++ G+P + Q + RP
Sbjct: 183 LTFKLCDIVKANAAIYQKIRDGSTGHQLKEHEELLQFHCATLVDNEISGMPRAAQKSGRP 242

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL I +V +P  +A  LTYPE V+
Sbjct: 243 IKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIALNLTYPEMVT 302

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
            HNI +L++ +  G +++PGA+ +  PDG+ RV       Q A  L+ G +V+RHL D D
Sbjct: 303 RHNIRRLQEMVHRGAEEHPGAKYVIRPDGS-RVDLRVSGAQGAPNLQPGWVVERHLSDND 361

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           V++FNRQPSLH+MS+M H+ ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+ EAR E
Sbjct: 362 VIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVEARAE 421

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMD 439
              L  V   + +P++ + ++   QD L      TR+DTF D+A     LM     DG  
Sbjct: 422 IQQLCMVPLQIVSPQSNKPVMGIVQDTLCGITKFTRRDTFMDKAMVMNLLMWVPGWDG-- 479

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
             ++P PAILKP  LWTGKQ+ S++I                K     L  T  D E   
Sbjct: 480 --NVPVPAILKPKPLWTGKQILSLII---------------PKVNCITLHSTHPDGET-- 520

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
             + P D  V   + EL++G + K T+G  +  GL  V   ++G  A    +N    +  
Sbjct: 521 TDISPGDTRVIVEDGELLAGIVCKKTVGT-SAGGLVHVSWMEHGPEAAKALLNGCQTIVN 579

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
            W+ ++GFSIGI D     +   +  +LI E     N  I+   +  L+++ G    +T 
Sbjct: 580 HWLLHNGFSIGIGDTIADDDTMQRINELIGEARAGVNAVIEAAQKDTLKVETGLTLRETF 639

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           EA +  +LN     AG A   S    N+   M   GSKGS INISQM ACVGQQ+V G+R
Sbjct: 640 EAQVNRLLNGAVNAAGGAAAKSFKVHNNVKHMVVAGSKGSNINISQMSACVGQQNVEGKR 699

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GF  RSLPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+T
Sbjct: 700 IPFGFQYRSLPHFVKDDYSPESRGFVENSYLRGLNPQEFFFHAMGGREGLIDTAVKTAET 759

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL-----NFD 794
           GY+ RRL+KALED+ ++YD +VRNA G I+QF YG+DGMD   +E +  EPL      FD
Sbjct: 760 GYIQRRLVKALEDIMVKYDGTVRNAQGNIIQFAYGEDGMDGTRVESQVLEPLRMSDAKFD 819

Query: 795 R 795
           R
Sbjct: 820 R 820


>gi|358390960|gb|EHK40365.1| hypothetical protein TRIATDRAFT_89498 [Trichoderma atroviride IMI
           206040]
          Length = 1756

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 299/723 (41%), Positives = 431/723 (59%), Gaps = 48/723 (6%)

Query: 76  KAAVNVA---------TYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVP 123
           KAA  VA         T  + P     + +R+++ D   + L+    RPE +IIT + VP
Sbjct: 194 KAAFEVAQEDGPKRKETAPITPEMAHSILRRISERDLVNMGLNSDYARPEWMIITVLPVP 253

Query: 124 PIAIRPSVIMDGSQS---NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
           P  +RPS+ MDG+ +   NE+D+T +L  II+ N +++Q + E +    +    E LQ  
Sbjct: 254 PPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYH 313

Query: 181 VAQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
           VA Y+++D+ G P ++Q   RP+     RLKGK+GR RGNL GKRV+++ RTVI+ D NL
Sbjct: 314 VATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANL 373

Query: 240 KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF 299
            + EV +P  +AR LTYPE V+ +NI KL Q ++NGP+++PGA+ +   DGT R+     
Sbjct: 374 SLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRSDGT-RIDLRHH 432

Query: 300 RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
           R    + L+ G  V+RHL DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PY
Sbjct: 433 RRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPY 492

Query: 360 NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
           NADFDGDEMN+HVPQ+EE R E   L  V NN+ +P+    L+   QD L  ++ I R+D
Sbjct: 493 NADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRD 552

Query: 420 TFYDRAAFSLMCCYM--GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNL 477
           TF D+     +  ++   DG+    +P PAILKP   WTGKQ+ S++I         ++L
Sbjct: 553 TFLDKNQVMNLMLWVPNWDGI----IPQPAILKPRPRWTGKQIISMVIPKE------ISL 602

Query: 478 TVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
              E    N L                ND  +  +  EL+ G + K ++G+ +  G+  +
Sbjct: 603 NAPEDKADNPL----------------NDTGLLIQAGELMYGLMKKKSIGSASG-GVIHL 645

Query: 538 LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK-KGKLISENYEVCN 596
              + G       +N + +++A W+   G SIGI D  P K+  +K +  + ++  EV  
Sbjct: 646 CYNELGPEGAMAFLNGVQQVTAYWLLQEGHSIGIGDTIPDKQTIEKVQAHIDTQKAEVAR 705

Query: 597 VKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
           +   +    +L+  PG +   T E  ++  LN+ R+ AG     SL   N+ + M++ GS
Sbjct: 706 L-TAQATANELEALPGMNVRATFENKVSMALNQARDQAGTTTQKSLKDSNNAVTMAESGS 764

Query: 657 KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
           KGS INISQM A VGQQ V G+R P GF  R+LPHF +    P A+GFV NS+  GL+ +
Sbjct: 765 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 824

Query: 717 EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDD 776
           EFFFH M GREGL+DTAVKTA+TGY+ RRL+KALEDL+ QYD +VRN+ G I+QFLYG+D
Sbjct: 825 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLNAQYDGTVRNSLGDIIQFLYGED 884

Query: 777 GMD 779
           G+D
Sbjct: 885 GLD 887



 Score =  173 bits (439), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 195/402 (48%), Gaps = 53/402 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1065 NRWDRSFVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKN 1124

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L+     +  A+ ++  +E T L  +    +I     + S  I  D++ ++
Sbjct: 1125 IKTPGMAVYLDTPLAKQEQAKKLRSLVEYTNLRSITSVTEIYYDPDVQSTTIVEDVDMVE 1184

Query: 1014 DAHLCINADIVKESIVQTPKI---------KLKQQHIKVLDF--RKLEIFPP-------- 1054
               L    D  +++I Q  +          KL  + IK+ D   R  E +P         
Sbjct: 1185 SYFLI--PDDTQDTIDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPNDLAVIFSD 1242

Query: 1055 --VDKSKIHFE---------------------LYSLK-NVLPMVIVKGIKTVERV----- 1085
               D+  I                        L  L+ ++L  + ++G+  VE+      
Sbjct: 1243 NNADEQVIRIRTIRAGDEKNDDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVEKAFLTKG 1302

Query: 1086 --VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
              ++   +  +  +K++    ++ L   G+ L+ V+   G+D  +T +N +++V +  GI
Sbjct: 1303 TRLVEAADGSELALKDDPRCTQWYLDTSGSALREVLAVPGVDPIRTYTNDLWQVVEVFGI 1362

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            E AR  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  S
Sbjct: 1363 EGARAALVKELTAVLAFDGSYVNHRHIALLCDVMTYRGSISAVTRHGINRADTGALMRCS 1422

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            FE+T + L  A+  G  D   G+SE +++G   P+GTG   +
Sbjct: 1423 FEETVEILLEAAATGELDDCRGISENVMLGQMAPMGTGHFDV 1464


>gi|520509|gb|AAA50225.1| RNA polymerase II, largest subunit, partial [Crassostrea gigas]
          Length = 1340

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 302/759 (39%), Positives = 451/759 (59%), Gaps = 42/759 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L    V  +FKR++D +C+VL +  R   P+ +I+T + VPP+A+RP+V+M GS  N++
Sbjct: 126 VLTADRVHEIFKRISDDECQVLGMDHRYSRPDWMIVTVMPVPPLAVRPAVVMFGSARNQD 185

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAG--WETLQVEVAQYINSDVRGVPFSMQVA 199
           D+T +L  II+ N  L++   E N A   +     + LQ  VA + ++++ G+P ++Q +
Sbjct: 186 DLTHKLADIIKANNQLRRN--EQNGAASHIISEDMKMLQYHVATFTDNELPGLPKAVQKS 243

Query: 200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RPL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ +T+PE
Sbjct: 244 GRPLKSVKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPE 303

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHL 317
            V+  NI+++++ ++ G ++YPGA+ I   +G    L  +F  + + + L+ G  V+RH+
Sbjct: 304 LVTPFNIDRMQELVRRGANQYPGAKYIIRDNGERIDL--RFHPKASDLHLQIGYKVERHM 361

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
           +D D ++FNRQP+LH+MS+MCH+ +++PW T R N SV  PYNADFDGDEMN+H+PQ+ E
Sbjct: 362 QDNDYIVFNRQPTLHKMSMMCHKVKVLPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 421

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMG 435
            + E   L  V   + TP+    ++   QD LT+   +T++D F DR      LM     
Sbjct: 422 TKAEISNLALVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLDRGQVMNLLMFLPRW 481

Query: 436 DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
           DG     +P PAILKP  LWTGKQLFS++I    N           +T+S     T  DE
Sbjct: 482 DG----HVPQPAILKPKPLWTGKQLFSLVIPGRTNCI---------RTHS-----THPDE 523

Query: 496 EIR--IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
           E +   + + P D  V   +  LISG L K TLG  +   L  V+  +YG          
Sbjct: 524 EDKGPYKWISPGDTKVLIEDGMLISGILCKKTLGTSS-GSLAHVVFMEYGWVIAGEMYGH 582

Query: 554 LAKLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
           +  L   W+   G SIGI D +   +   D +  +    ++V  V  K +N+  L+  PG
Sbjct: 583 IQTLVNNWLLLEGHSIGIGDTIADPQTYIDIQDTIKKAKHDVIEVIEKAHND-DLEPTPG 641

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
               QT E ++  ILN  R+  G     SL   N+   M   GSKGS INISQ++ACVGQ
Sbjct: 642 NTLRQTFENMVNRILNDARDKTGSKAQKSLSDYNNFKAMVVAGSKGSKINISQVIACVGQ 701

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           Q+V G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DT
Sbjct: 702 QNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT 761

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLN 792
           AVKTA+TGY+ RRLIKA+E + ++YD +VRN    +VQ  YG+DG+D  ++E ++   L 
Sbjct: 762 AVKTAETGYIQRRLIKAMESVMVKYDGTVRNQVEQLVQLRYGEDGLDATHVEFQTMPTLK 821

Query: 793 -----FDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLA 826
                F+R   K  AT     ++ LS + + +++   LA
Sbjct: 822 PSNRAFERQF-KFDATNERNMKKCLSEEVIKDLMGDALA 859



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 175/374 (46%), Gaps = 61/374 (16%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    SR++  +   G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T 
Sbjct: 971  LSSEAFEWLIGEVESRFQQAQAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTL 1030

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN +K+  TP +T  L  +   +   A+ V  R+E T L +V  +  I    
Sbjct: 1031 GVPRLKEIINISKKPKTPSLTVYLIGQAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDP 1090

Query: 999  RLASIVIA----------------------------LDMETIQDAHL------------- 1017
               + VI+                            LD + + D  L             
Sbjct: 1091 DPQNTVISEDQEWVNVYYEMPDFDVSKISAWLLRIELDRKRMTDKKLTMEQISEKITAGF 1150

Query: 1018 -----CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NVL 1071
                 CI  D   E +V   +I +     K+ +  ++     VDK +    L  ++ N+L
Sbjct: 1151 GDDLNCIFNDDNAEKLVLRIRI-MNSDESKMQNEEEI-----VDKMEDDVFLRCIEANLL 1204

Query: 1072 PMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGID 1125
              + ++GI+ + +V +     E +K   + E GE K   ++ L  +GT L  V+    +D
Sbjct: 1205 SDMTLQGIEAIAKVYMHLPNTEDKKRISITEEGEFKAVAEWILETDGTALMKVLSQRDVD 1264

Query: 1126 GCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLG 1185
              +T +N I EV   LGIEA R  I  E+N  +   G  ++ RH+ LL D MT +G ++ 
Sbjct: 1265 PIRTTTNDIVEVFSILGIEAVRKSIEKEMNHVISFDGSYVNYRHLSLLCDSMTAKGHLMA 1324

Query: 1186 ITRFGIQKMDKSVL 1199
            ITR GI + +   L
Sbjct: 1325 ITRHGINRQETGAL 1338


>gi|400603032|gb|EJP70630.1| RNA polymerase Rpb1 [Beauveria bassiana ARSEF 2860]
          Length = 1759

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 293/695 (42%), Positives = 418/695 (60%), Gaps = 37/695 (5%)

Query: 94  LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS---NENDITERL 147
           + +R+++ D   + L+    RPE +IIT + VPP  +RPS+ MDG+ +   NE+D+T +L
Sbjct: 221 ILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTGTRNEDDLTYKL 280

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFV 206
             II+ N +++Q + E +    +    E LQ  VA Y+++D+ G P ++Q   RP+    
Sbjct: 281 GDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIR 340

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LTYPE V+ +NI 
Sbjct: 341 ARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIA 400

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL Q ++NGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL DGD ++FN
Sbjct: 401 KLHQLVENGPNEHPGAKYVIRSDGT-RIDLRHHRRAAQISLEYGWKVERHLIDGDYIIFN 459

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+ S+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQTEE R E   L 
Sbjct: 460 RQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELC 519

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
            V NN+ +P+    L+   QD L   + + R+DTF D+     +  ++   DG+    +P
Sbjct: 520 LVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLMLWVPNWDGV----IP 575

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAILKP   WTGKQ+ S++I P       ++L  KE    N                  
Sbjct: 576 QPAILKPRPRWTGKQIISMVIPPE------ISLYSKEDKLDNPR---------------- 613

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
           +D  +  ++ EL+ G L K ++G     G+  +   + G       +N + ++   W+ N
Sbjct: 614 HDAGLLIQSGELMYGLLKKKSVGAA-AGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLN 672

Query: 565 HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
            GFSIGI D  P K   +K  + I E+         +    +L+  PG +   T E  ++
Sbjct: 673 TGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVS 732

Query: 625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
             LN  R+ AG + M SL   N+ + M+  GSKGS INISQM A VGQQ V G+R P GF
Sbjct: 733 MALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGF 792

Query: 685 IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
             R+LPHF +    P A+GFV NS+  GL+ +EFFFH M GREGL+DTAVKTA+TGY+ R
Sbjct: 793 KYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQR 852

Query: 745 RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           RL+KALEDLS +YD +VRN+ G ++QFLYG+DG+D
Sbjct: 853 RLVKALEDLSARYDGTVRNSLGDVIQFLYGEDGLD 887



 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 194/400 (48%), Gaps = 49/400 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1065 NRWDRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKN 1124

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L+     +  A+ ++  +E T L  V    +I     + +  IA D++ ++
Sbjct: 1125 IKTPSMAVYLDTKLGTQEQAKKLRSLVEYTNLRSVTSVTEIYYDPEVQATNIAEDVDMVE 1184

Query: 1014 --------------------------------------DAHLCINADIVKESIVQTPKIK 1035
                                                  D   CI  +   +  +      
Sbjct: 1185 SYFMIPDDAQDTIHRQSRWLLRITLDRQKLLDKEIKIDDVAACIKEEYSNDLAIIFSDNN 1244

Query: 1036 LKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK---NVLPMVIVKGIKTVERV------- 1085
              +Q I++   R+ +       +KI  ++   +   ++L  + ++G+  +ER        
Sbjct: 1245 ADEQVIRIRTIRQSDDKDEDSDTKIEDDVMLKRLEAHLLDTMTLRGVPGIERAFLTKGTR 1304

Query: 1086 VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
            ++ +++  +  +K+N +  ++ L   G+ L+ V+   G+D  +T SN ++++ +  G+EA
Sbjct: 1305 LVEDEDGSELALKDNPKCTQWYLDTSGSALREVLAVPGVDPTRTYSNDLYQITEVFGVEA 1364

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
             R  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SFE
Sbjct: 1365 VRSALVKELTNVLAFDGSYVNHRHIALLCDIMTYRGVISAVTRHGINRADTGALMRCSFE 1424

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            +T + L  A+  G  D   G+SE +++G   P+GTG   +
Sbjct: 1425 ETVEILLEAAATGELDDCRGISENVMLGQLAPMGTGNFDV 1464


>gi|188532145|gb|ACD63084.1| RNA polymerase II largest subunit [Drimys winteri]
          Length = 1010

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 302/725 (41%), Positives = 426/725 (58%), Gaps = 40/725 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D DC +L L     RP+ +I+  + +PP  +RPSV+MD S  +E+D
Sbjct: 131 LSAERVLSILKRISDEDCRLLGLDPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDD 190

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++      A       + LQ  +A Y ++++ G P + Q + RP
Sbjct: 191 LTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 250

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  LTYPE V+
Sbjct: 251 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVT 310

Query: 262 DHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHL 317
            +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RHL
Sbjct: 311 PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL--GYKVERHL 368

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E
Sbjct: 369 NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 428

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
            R E L LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D 
Sbjct: 429 TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 488

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKL---IRTEGD 494
             +V  P PAILKP  LWTGKQ+F+++I    N+       +++  + ++      T GD
Sbjct: 489 DGKV--PAPAILKPRPLWTGKQVFNLIIPKQINL-------IRQSAWHSETETGFITPGD 539

Query: 495 EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
            ++RIE              EL+ G L K TLG      L  V+  + G  A    +   
Sbjct: 540 TQVRIE------------RGELLCGTLCKKTLGTST-GSLIHVIWEEVGPDAARKFLGHT 586

Query: 555 AKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
             L   W+  +GFSIGI D        D   + IS+        I    +  L+ +PG  
Sbjct: 587 QWLVNYWLLQNGFSIGIGDTIADAATMDTISETISKAKNDVKELIMAAQDKALEAEPGRT 646

Query: 615 AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
             ++ E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+
Sbjct: 647 MTESFENRVNQVLNKARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 706

Query: 675 VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
           V G+R P GFI R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAV
Sbjct: 707 VEGKRIPYGFIGRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 766

Query: 735 KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFD 794
           KT++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +       D
Sbjct: 767 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK-----LD 821

Query: 795 RLLMK 799
            L MK
Sbjct: 822 SLKMK 826


>gi|413915242|gb|AFW21483.1| RNA polymerase II largest subunit [Claviceps fusiformis]
          Length = 1761

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 302/723 (41%), Positives = 435/723 (60%), Gaps = 43/723 (5%)

Query: 76  KAAVNVA---------TYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVP 123
           KAA +VA         T  + P     + KR+++ D   + L+    RPE LIIT + VP
Sbjct: 192 KAAFDVAQEDGPKRRETVPITPEMAHGILKRISEEDLRHMGLNSDYARPEWLIITVLPVP 251

Query: 124 PIAIRPSVIMDGSQS---NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
           P  +RPS+ MDG+ +   NE+D+T +L  II+ N +++Q + E +    +    E LQ  
Sbjct: 252 PPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYH 311

Query: 181 VAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
           VA Y+++D+ G P ++Q + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ D NL
Sbjct: 312 VATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANL 371

Query: 240 KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF 299
            + EV +P  +AR LTYPE V+ +NI KL Q ++NGP+++PGA+ +   DGT R+     
Sbjct: 372 SLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRADGT-RIDLRHH 430

Query: 300 RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
           R    + L+ G  V+RHL DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PY
Sbjct: 431 RRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPY 490

Query: 360 NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
           NADFDGDEMN+HVPQTEE R E   L  V NN+ +P+    L+   QD L  ++ I R+D
Sbjct: 491 NADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRD 550

Query: 420 TFYDRAAFSLMCCYM--GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNL 477
           TF D+     M  ++   DG+    +P PAILKP   WTGKQL S++I    ++      
Sbjct: 551 TFVDKEMVMNMMLWVPNWDGV----IPQPAILKPRPRWTGKQLISMVIPKEISL------ 600

Query: 478 TVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
                 +S +    + + +I ++     D  +  ++ EL+ G L K  +G+    G+  +
Sbjct: 601 ------HSPESSGAQDNADIPLK-----DTGLLIQSGELLYGLLKKKNIGSA-AGGIVHL 648

Query: 538 LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK-KGKLISENYEVCN 596
              + G       +N + ++   W+ N+G SIGI D  P K+  +K +  + ++  EV  
Sbjct: 649 SYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVAR 708

Query: 597 VKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
           +   +    +L+  PG +   T E  ++  LN  R+ AG     SL   N+ + M++ GS
Sbjct: 709 L-TAQATANELEALPGMNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGS 767

Query: 657 KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
           KGS INISQM A VGQQ V G+R P GF  R+LPHF +    P A+GFV NS+  GL+ +
Sbjct: 768 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 827

Query: 717 EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDD 776
           EFFFH M GREGL+DTAVKTA+TGY+ RRL+KALEDLS +YD +VRN+ G I+QFLYG+D
Sbjct: 828 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGED 887

Query: 777 GMD 779
           G+D
Sbjct: 888 GLD 890



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 199/401 (49%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1068 NRWDRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKD 1127

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L  +   +  A+ ++  +E T L  +    +I     +    IA DM+ ++
Sbjct: 1128 IKTPSMAVYLNTHLGTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIAEDMDMVE 1187

Query: 1014 DAHLCINADIVKESIVQT--------PKIKLKQQHIKVLDF--RKLEIFPP--------- 1054
             ++  I  D    +  Q+         + KL  + IK+ D   R  E +P          
Sbjct: 1188 -SYFLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAVIFSDN 1246

Query: 1055 -VDKSKIHFE---------------------LYSLK-NVLPMVIVKGIKTVERV------ 1085
              D+  I                        L  L+ ++L  + ++G+  VER       
Sbjct: 1247 NADEQVIRIRTIRSDSDKDEEGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGT 1306

Query: 1086 -VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
             ++ + +  +   K++ +  ++ L   G+ L+ V+  +G+D  +T +N ++++ +  GIE
Sbjct: 1307 RLVVDDDGSEIAKKDDDKCTQWYLDTSGSALREVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSF 1426

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+ +G  D   G+SE +++G   P+GTG   +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDV 1467


>gi|336121472|ref|YP_004576247.1| DNA-directed RNA polymerase subunit A' [Methanothermococcus
           okinawensis IH1]
 gi|334855993|gb|AEH06469.1| DNA-directed RNA polymerase subunit A' [Methanothermococcus
           okinawensis IH1]
          Length = 888

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/723 (39%), Positives = 438/723 (60%), Gaps = 37/723 (5%)

Query: 94  LFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
           + +++ D DC +L ++    RPE +++T + VPP+ +RPS+ ++  + +E+D+T +L  I
Sbjct: 186 ILEKIPDEDCTLLGINPEVARPEWMVLTVLPVPPVTVRPSITLESGERSEDDLTHKLVDI 245

Query: 151 IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARPLSGFVQRL 209
           I+ N  L++ +            W+ LQ  +  Y +++  G P +  +  RPL    QRL
Sbjct: 246 IRINQRLEENIEGGAPNLIIEDLWDLLQYHINTYFDNEAPGTPPARHRSGRPLRTIAQRL 305

Query: 210 KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
           KGK+GRFR NL+GKRV ++ RTVISPDP L I EV +P ++A+ LT PE+V+ +NI K+R
Sbjct: 306 KGKEGRFRHNLAGKRVNFSARTVISPDPCLSINEVGVPEKIAKELTVPEKVTRYNINKIR 365

Query: 270 QCIQNGPDKYPGA----RMIRYPDGTARVLYGKFRN---QLAVE-LKSGCIVDRHLEDGD 321
           + ++NG +K+PG     + ++  DG    L  K  +   ++ +E ++ G IV+RHL +GD
Sbjct: 366 ELLKNGSEKHPGVNYIIKKVKTRDGKEDELKIKITDKNKEVWIEKIEEGMIVERHLMNGD 425

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +VL+NRQPSLHRMSIM H+ +++P+RT R N  VC PYNADFDGDEMN+HVPQ EEAR E
Sbjct: 426 IVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVCPPYNADFDGDEMNLHVPQLEEARAE 485

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
           A  LM V+ ++ +P+ G  ++ +  DF++ ++++T      D A+  L     G G+ + 
Sbjct: 486 AENLMLVEKHIVSPRYGGPIIGAIHDFISGAYILTSSYFTKDEASIILR----GSGL-KD 540

Query: 442 DLPTPAILKP-VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           DL  P I+K  VEL++GK LFS  +    N+R           Y  K+ +     E   E
Sbjct: 541 DLGEPDIVKDGVELYSGKNLFSRTLPHDLNLR-----------YRAKICKKCDKCE---E 586

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGL-YSVLLRDYGAHATSGCMNRLAKLSA 559
             CP D +V  +N +LI G + K   G G++ G+  + ++R++G+      ++   K+S 
Sbjct: 587 ENCPYDAYVLIKNGKLIKGVIDKN--GYGSEAGIILNTIVREFGSEEARKFLDTSTKMSI 644

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
           R +   GF+ GIDD    +E   +  K +    E     IK+Y EG L+  PG    ++ 
Sbjct: 645 RALMIKGFTTGIDDEDIPEEAIKEIQKSLDRAEEQVEEIIKQYEEGTLEPLPGRGLEESR 704

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           EA I  IL + R++AGK     L   N   +M++ G++GS +NI+ M  CVGQQ+V G R
Sbjct: 705 EAYIMQILGKARDEAGKIAERYLSEDNHAAVMARTGARGSLLNITMMAGCVGQQAVRGGR 764

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
              G+  R+LPHF + +    + GFV + +  GLS TE+FFH MGGREGLVD AV+TA +
Sbjct: 765 VFRGYRGRTLPHFEKGSLSAKSHGFVRSCYKKGLSPTEYFFHAMGGREGLVDQAVRTAQS 824

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 799
           GYM RRL+ AL+DL  +YD +VR++ G IVQF YGDD +DP+  +   G+ ++ D++L K
Sbjct: 825 GYMQRRLVNALQDLKAEYDGTVRDSKGLIVQFAYGDDYVDPSKAD--HGKSVDLDKILTK 882

Query: 800 VKA 802
           VK+
Sbjct: 883 VKS 885


>gi|304315186|ref|YP_003850333.1| DNA-directed RNA polymerase, subunit A' [Methanothermobacter
            marburgensis str. Marburg]
 gi|302588645|gb|ADL59020.1| DNA-directed RNA polymerase, subunit A' [Methanothermobacter
            marburgensis str. Marburg]
          Length = 1152

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/756 (37%), Positives = 440/756 (58%), Gaps = 36/756 (4%)

Query: 56   SKVTESLQEFASAI-----THTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS- 109
             K+ E ++E+          + ++ +  ++   Y L P  V    +R+TD D  +L ++ 
Sbjct: 418  DKILEKIEEYTKTSDKFCRINIRDVRRVLDRIDYKLTPSEVRDRLERITDDDALILGVNP 477

Query: 110  --ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSA 167
               RPE +++T + VPP+ +RPS+ ++  + +E+D+T +L  I++ N  L++ +      
Sbjct: 478  EVARPEWMVLTVLPVPPVTVRPSITLETGERSEDDLTHKLVDILRINQRLKENMEAGAPQ 537

Query: 168  FKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVE 226
                  WE LQ  V  Y +++  GVP +  +  RPL    QRLKGK+GRFR NLSGKRV 
Sbjct: 538  LIVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVN 597

Query: 227  YTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIR 286
            ++ RTVISPDPN+ I EV +P  +AR +T P  V++ NI+++R+ I+NGPD +PGA  + 
Sbjct: 598  FSARTVISPDPNISINEVGVPEIIAREVTVPVYVAEWNIDRMREYIENGPDVHPGANYVI 657

Query: 287  YPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW 346
             PDG    +Y + ++ +   LK G IV+RHL+DGD+VLFNRQPSLHRMS+M H  R++P+
Sbjct: 658  RPDGRKIRIYNETKDVVLENLKPGYIVERHLKDGDIVLFNRQPSLHRMSMMAHEVRVLPY 717

Query: 347  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQ 406
            +T R N  VC PYNADFDGDEMNMHV QTEE+R EA  LM VQ ++ +P+ G  ++    
Sbjct: 718  KTFRLNLCVCPPYNADFDGDEMNMHVFQTEESRAEAKTLMRVQEHILSPRFGGPIIGGIH 777

Query: 407  DFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIR 466
            D ++ ++L+TRK     RA FS    +    + +  LP P   +    WTGK++FS+++ 
Sbjct: 778  DHISGAYLLTRK-----RAVFSEDKVFQ--ILKKAGLPLPD--RRGRDWTGKEIFSMVLP 828

Query: 467  PHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATL 526
               NM            Y  ++ R    EE  +E  C ND +V   N ELISG + +   
Sbjct: 829  DDLNM-----------VYRAEICRK--CEEC-LEMDCENDAYVVIENGELISGVIDEKAY 874

Query: 527  GNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGK 586
            G      +   ++++YG  A    ++   KL+   I + GF+   +D +  +E  ++   
Sbjct: 875  G-AFAGKILDHIVKEYGTDAARKFLDSATKLAIAGIMHAGFTTSTNDEEIPEEARERIEA 933

Query: 587  LISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW-R 645
             +       +  I+ Y  G+L+  PG    +TLE  I  +L   R+ +G+          
Sbjct: 934  HLRNAEARVDQLIEAYENGELEPLPGRSLEETLEMKIMQVLGEARDKSGEIAESYFDMDE 993

Query: 646  NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFV 705
            N  +IM+  G++GS +N++Q+ ACVGQQSV G R   G+ +R+LPHF R      ++GFV
Sbjct: 994  NHAVIMALTGARGSMLNLTQITACVGQQSVRGGRISRGYDNRTLPHFKRGELGAKSRGFV 1053

Query: 706  ANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAG 765
             +S+  GL   EFFFH MGGREGLVDTA++TA +GYM RRL+ AL+DL++  D  V +  
Sbjct: 1054 HSSYKEGLDPIEFFFHAMGGREGLVDTAIRTAQSGYMQRRLVNALQDLTVNEDGKVVDNR 1113

Query: 766  GCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVK 801
            G I+Q  +G+DG+DPA  +   G+ ++ D+L+ +++
Sbjct: 1114 GVIIQTRFGEDGVDPAKSD--YGKIVDLDKLVEEIR 1147


>gi|188532153|gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orientale]
          Length = 1010

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 304/720 (42%), Positives = 426/720 (59%), Gaps = 40/720 (5%)

Query: 91  VLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL + KR++D DC +L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+D+T +L
Sbjct: 136 VLSVLKRISDEDCILLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSARSEDDLTHQL 195

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+ N +L+++      A   L   + LQ  +A Y ++++ G P + Q + RP+    
Sbjct: 196 AMIIRHNENLRKQERNGAPAHIILEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC 255

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  LTYPE V+ +NIE
Sbjct: 256 SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIE 315

Query: 267 KLRQCIQNGPDKYP-----GARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
           +L++ ++ GP  +P     GA+ I   DG    L Y K  +   +EL  G  V+RHL DG
Sbjct: 316 RLKELVEYGP--HPPVGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL--GYKVERHLNDG 371

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R 
Sbjct: 372 DFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRA 431

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           E L LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D   +
Sbjct: 432 EVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK 491

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANM-RVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
           V  P P ILKP  LWTGKQ+F+++I    N+ R     +  E  +      T GD ++RI
Sbjct: 492 V--PAPTILKPRPLWTGKQVFNLIIPKQINLLRTSAWHSENETGFI-----TPGDTQVRI 544

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
           E              EL++G L K  LG      L  V+  + G  A    +     L  
Sbjct: 545 E------------RGELLTGTLCKKALGTST-GSLIHVIWEEVGPDAARKFLGHTQWLVN 591

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
            W+  +GFSIGI D        +K    IS+        I+   E  L+ +PG    ++ 
Sbjct: 592 YWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESF 651

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R
Sbjct: 652 ENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 711

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GFIDR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++T
Sbjct: 712 IPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 771

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 799
           GY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +       D L MK
Sbjct: 772 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK-----LDSLKMK 826


>gi|406700979|gb|EKD04138.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
           var. asahii CBS 8904]
          Length = 1771

 Score =  521 bits (1341), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 291/702 (41%), Positives = 418/702 (59%), Gaps = 35/702 (4%)

Query: 94  LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKR 149
           + K++ D D  ++ L+    RP+ +I+T + VPP A+RPS+ +DG +  +E+D+T +L  
Sbjct: 215 ILKKIPDEDLLIMGLNAEYARPDWMILTVLPVPPAAVRPSISVDGGAMRSEDDLTYKLGE 274

Query: 150 IIQTNASLQQELVEANSAFKSLAG--WETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFV 206
           I++ +A +++  +EA     S+    ++ LQ  VA Y+++D+ G+P ++Q   RP+    
Sbjct: 275 ILKASAQVRK--LEAEGVPPSVVNEHFDLLQFHVATYMDNDIAGIPQALQKSGRPVKAIR 332

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ +V +P  +A  LTYPERV+ +NI 
Sbjct: 333 ARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTPYNIN 392

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQ-LAVELKSGCIVDRHLEDGDVVLF 325
            L+Q I NGP  YPGAR   Y   T   +  K+R     + L+ G IV+RHL+DGD VLF
Sbjct: 393 YLQQLINNGPATYPGARY--YVKDTGERIDLKYRKSGEPIPLQFGWIVERHLKDGDYVLF 450

Query: 326 NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
           NRQPSLH+MS+M HR ++M + T R N SV +PYNADFDGDEMN+HVPQ+EE R E   +
Sbjct: 451 NRQPSLHKMSMMSHRVKVMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQI 510

Query: 386 MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPT 445
             V   + +P+  + ++   QD L      T +D F D A    +  ++ D    +  P 
Sbjct: 511 AWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDNFCDWAFVQNLLLWLPDWDGTI--PP 568

Query: 446 PAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 505
           PAILKP  +WTGKQL S+ I    N+  + N               E    I +      
Sbjct: 569 PAILKPRPMWTGKQLVSMCIPKGINIAAHDN---------------ERPSPIDV-----T 608

Query: 506 DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
           D  V   N EL+ G + K+  G  + +GL  V+ R+ G        + + ++   W+ ++
Sbjct: 609 DQNVLVDNGELVYGTITKSMAGAAS-NGLIHVIFRELGHIKARDFFSAMQRVINFWLLHN 667

Query: 566 GFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITD 625
           GFS+GI D              + E  +     I E    K++ +PG    +TLEA ++ 
Sbjct: 668 GFSVGIGDTIADSATMAAVNNRLVEAKDTVQAFISEAENNKMKPRPGMTIRETLEAAVSG 727

Query: 626 ILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFI 685
            LN+ R+ AGK    +L   N+   M   G+KGS INISQM  CVGQQ V G+R P GF 
Sbjct: 728 ELNKARDWAGKTAQDNLKADNNVKQMVVSGAKGSFINISQMSGCVGQQIVEGKRIPFGFR 787

Query: 686 DRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRR 745
            R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+TGY+ RR
Sbjct: 788 HRTLPHFSKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRR 847

Query: 746 LIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           L+KA+EDL + YD +VRN+GG I+QFLYG+DGMD A ME ++
Sbjct: 848 LVKAMEDLKVGYDGTVRNSGGDIIQFLYGEDGMDGAMMEKQT 889



 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/398 (32%), Positives = 198/398 (49%), Gaps = 46/398 (11%)

Query: 890  IQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII 949
            I+T F+R     V A   +G + AQSIGEP TQMTL TFH+AGV+S ++T GVPR+KEII
Sbjct: 1056 IETLFNR---AIVAAAEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKSVTGGVPRLKEII 1112

Query: 950  NGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIAL 1007
            N A  I TP     L  E +  E  A  +  ++  T L  V  S++I    +L S  I  
Sbjct: 1113 NVATNIRTPATNVYLDPEYSRTERDAHQISRKLTYTRLRDVTASVEIFYDPKLDSTDIEE 1172

Query: 1008 DMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLD--FRKLEIFPPVDKS--KIHFE 1063
            D E + DA   I  + ++  +     ++L+    KVL+  +   +I   +  +  K  F 
Sbjct: 1173 DKEFV-DAFFAIPDEDIRLELHSPWLLRLELDRAKVLEGGYEMADIVSAIVSTVGKDMFV 1231

Query: 1064 LYSLKNVLPMVI-----------------------------------VKGIKTVERVVIA 1088
            ++S  N   ++I                                   + GI  + RV I+
Sbjct: 1232 IHSEDNADKLIIRIRVVAEEKMDGEELLGDEDMFLKRIELTLLDGVELGGIPGITRVFIS 1291

Query: 1089 E-KEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAAR 1147
            E K+    +  E  +++++ L  +G  LQ VM  +G+D  +  SN+ +EV Q LGIEA R
Sbjct: 1292 EGKQTVLSQKGEYDQQQEWFLETDGINLQQVMAVDGVDFTRAYSNNCYEVWQILGIEAGR 1351

Query: 1148 ICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKT 1207
              +  E++  + + G  ++ RHM LL DLM  +G ++ ITR GI + D   L   SFE+T
Sbjct: 1352 NALYKELHGVIASGGSYVNYRHMALLCDLMCNKGHLMSITRHGINRTDAGALSRCSFEET 1411

Query: 1208 ADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             + L  A+  G  D  +GV+E +++G   P+GTG   +
Sbjct: 1412 VEILLEAAAVGDVDDCQGVAENVLLGQMAPMGTGAFDV 1449


>gi|45935333|gb|AAS79688.1| RNA polymerase II large subunit [Ephedra viridis]
          Length = 1013

 Score =  521 bits (1341), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 298/724 (41%), Positives = 427/724 (58%), Gaps = 44/724 (6%)

Query: 91  VLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL + KR++D +C++L       RP+ +I+  + +PP  +RPSV+M+ +  +E+D+T +L
Sbjct: 139 VLNILKRISDEECQMLGFDPQFARPDWMILQVLPIPPPPVRPSVMMNSTSRSEDDLTHQL 198

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+ N +L+++      A       + LQ  VA Y ++++ G P + Q + RP+    
Sbjct: 199 AMIIRHNETLKKQEKNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSIC 258

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I ++ +P  +A  LTYPE V+ +NIE
Sbjct: 259 SRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIE 318

Query: 267 KLRQCIQNGPDKYPGARMIRY--PDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVL 324
           +L++ ++ GP   PG    +Y   D   R+     +      L+ G  V+RHL DGD VL
Sbjct: 319 RLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVL 378

Query: 325 FNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALL 384
           FNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E L 
Sbjct: 379 FNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEILE 438

Query: 385 LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLP 444
           LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D   +V  P
Sbjct: 439 LMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKV--P 496

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIR---TEGDEEIRIET 501
            PAILKP  +WTGKQ+F+++I    N+       V+   + N+  R   T GD  +RIE 
Sbjct: 497 APAILKPRPIWTGKQVFNLIIPKQINL-------VRYSAWHNESDRGHLTLGDTVVRIE- 548

Query: 502 MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARW 561
                        E+I+G L K TLG  +   L  V+  + G  A    +     L   W
Sbjct: 549 -----------KGEVITGTLCKKTLG-ASSGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 596

Query: 562 IGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKE----YNEGKLQLKPGCDAAQ 617
           +   GFS+GI D        D     I+E  +   +K++E    Y   KL+ +PG    +
Sbjct: 597 LLQQGFSMGIGDTIADATTMDT----INETIQDAKIKVQELIEKYMAHKLEQEPGRTLLE 652

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           + E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G
Sbjct: 653 SFENQVNQVLNKARDDAGNSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 712

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +  K P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT+
Sbjct: 713 KRIPYGFQGRTLPHFVKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 772

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +       D L 
Sbjct: 773 ETGYIQRRLVKAMEDIMVKYDATVRNSLGDVIQFLYGEDGMDAVRIESQK-----LDHLK 827

Query: 798 MKVK 801
           MK K
Sbjct: 828 MKKK 831


>gi|45935331|gb|AAS79687.1| RNA polymerase II large subunit [Ginkgo biloba]
          Length = 1013

 Score =  521 bits (1341), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 298/718 (41%), Positives = 425/718 (59%), Gaps = 29/718 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L    VL + KR++D +C++L L+    RP+ +I+  + +PP  +RPSV+MD +  +E+D
Sbjct: 134 LTAEKVLSVLKRISDEECQLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTTSRSEDD 193

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++      A       + LQ  +A Y ++D+ G P + Q + RP
Sbjct: 194 LTHQLAMIIRHNENLKRQERNGAPAHIITEFAQLLQFHIATYFDNDLPGQPRATQRSGRP 253

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I ++ +P  +A  LTYPE V+
Sbjct: 254 IKSICNRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVT 313

Query: 262 DHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHL 317
            +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RHL
Sbjct: 314 PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL--GYKVERHL 371

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E
Sbjct: 372 NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 431

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
            R E L LM V   + +P++   ++   QD L     +T++DTF ++  F  +  +  D 
Sbjct: 432 TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDF 491

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
             ++  P+P ILKP  LWTGKQ+F+++I    N+  Y     + +T       T GD  +
Sbjct: 492 DGKI--PSPTILKPRPLWTGKQVFNLIIPRQINLIRYSAWHSESETG----FITPGDTCV 545

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
           RIE              E++SG L K TLG  +   L  V+  + G  A    +     L
Sbjct: 546 RIE------------KGEVLSGTLCKKTLGTSS-GSLIHVIWEEVGPDAARKFLGHTQWL 592

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
              W+   GFSIGI D        +   + IS+        IK   E  L+ +PG    +
Sbjct: 593 VNYWLLQQGFSIGIGDTIADAATMETINETISKAKNEVKQLIKAAQEKALEAEPGRTMME 652

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           + E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G
Sbjct: 653 SFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 712

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT+
Sbjct: 713 KRIPYGFDGRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 772

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR 795
           +TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L   R
Sbjct: 773 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKR 830


>gi|443906356|dbj|BAM76816.1| RNA polymerase II largest subunit, partial [Metacordyceps
           brittlebankisoides]
          Length = 845

 Score =  520 bits (1340), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 301/724 (41%), Positives = 429/724 (59%), Gaps = 48/724 (6%)

Query: 74  ESKAAVNVA---------TYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIA 121
           + KAA +VA         T  + P     + +R+++ D   + L+    RPE +I+T + 
Sbjct: 16  QXKAAFDVAQEDGPKRRETVPITPEMAHGILRRISEEDLRHMGLNSDYARPEWMILTVLP 75

Query: 122 VPPIAIRPSVIMDGSQS---NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQ 178
           VPP  +RPS+ MDG+ +   NE+D+T +L  II+ N +++Q + E +    +    E LQ
Sbjct: 76  VPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQ 135

Query: 179 VEVAQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDP 237
             VA Y+++D+ G P ++Q   RP+     RLKGK+GR RGNL GKRV+++ RTVI+ D 
Sbjct: 136 YHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDA 195

Query: 238 NLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYG 297
           NL + EV +P  +AR LTYPE V+ +NI KL Q ++NGP+++PGA+ +   DGT R+   
Sbjct: 196 NLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRADGT-RIDLR 254

Query: 298 KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCN 357
             R    + L+ G  V+RHL DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +
Sbjct: 255 HHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTS 314

Query: 358 PYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR 417
           PYNADFDGDEMN+HVPQTEE R E   L  V NN+ +P+    L+   QD L   + + R
Sbjct: 315 PYNADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCR 374

Query: 418 KDTFYDRAAFSLMCCYM--GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYV 475
           +DTF D+     M  ++   DG+    +P PAILKP   WTGKQL S++I    ++    
Sbjct: 375 RDTFIDKEMVMNMMLWVPNWDGV----IPQPAILKPRPRWTGKQLISMVIPQEISLHA-- 428

Query: 476 NLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLY 535
                           EGD +I ++     D  +  ++ EL+ G L K  +G     G+ 
Sbjct: 429 ---------------PEGDSDIPLK-----DTGLLIQSGELLYGLLKKKNVGAA-AGGII 467

Query: 536 SVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK-KGKLISENYEV 594
            +   + G       +N + ++   W+ N G SIGI D  P K+  +K +  + ++  EV
Sbjct: 468 HLCYNELGPEGAMAFLNGVQQVVTYWLLNTGHSIGIGDTVPDKQTIEKIQVHIDTQKAEV 527

Query: 595 CNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQC 654
             +   +    +L+  PG +   T E  ++  LN  R+ AG     SL   N+ + MS+ 
Sbjct: 528 AKL-TAQATANELEALPGMNVRATFENKVSMALNSARDQAGTTTQKSLKDSNNAVTMSES 586

Query: 655 GSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLS 714
           GSKGS INISQM A VGQQ V G+R P GF  R+LPHF +    P A+GFV NS+  GL+
Sbjct: 587 GSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLT 646

Query: 715 ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYG 774
            +EFFFH M GREGL+DTAVKTA+TGY+ RRL+KALEDLS +YD +VRN+ G IVQFLYG
Sbjct: 647 PSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIVQFLYG 706

Query: 775 DDGM 778
           +DG+
Sbjct: 707 EDGL 710


>gi|322694724|gb|EFY86546.1| DNA-directed RNA polymerase II largest subunit [Metarhizium acridum
           CQMa 102]
          Length = 1746

 Score =  520 bits (1340), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 302/723 (41%), Positives = 428/723 (59%), Gaps = 48/723 (6%)

Query: 76  KAAVNVA---------TYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVP 123
           KAA +VA         T  + P     + +R+++ D   + L+    RPE +I+T + VP
Sbjct: 192 KAAFDVAQEDGPKRRETVPITPEMAHGILRRISEEDLRHMGLNSDYARPEWMILTVLPVP 251

Query: 124 PIAIRPSVIMDGSQS---NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
           P  +RPS+ MDG+ +   NE+D+T +L  II+ N +++Q + E +    +    E LQ  
Sbjct: 252 PPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYH 311

Query: 181 VAQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
           VA Y+++D+ G P ++Q   RP+     RLKGK+GR RGNL GKRV+++ RTVI+ D NL
Sbjct: 312 VATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANL 371

Query: 240 KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF 299
            + EV +P  +AR LTYPE V+ +NI KL Q ++NGP+++PGA+ +   DGT R+     
Sbjct: 372 SLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRADGT-RIDLRHH 430

Query: 300 RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
           R    + L+ G  V+RHL DGD ++FNRQPSLH+ S+M H+ R+MP+ T R N SV +PY
Sbjct: 431 RRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHQVRVMPYSTFRLNLSVTSPY 490

Query: 360 NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
           NADFDGDEMN+HVPQTEE R E   L  V NN+ +P+    L+   QD L   + + R+D
Sbjct: 491 NADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRD 550

Query: 420 TFYDRAAFSLMCCYM--GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNL 477
           TF D+     M  ++   DG+    +P PAILKP   WTGKQL S++I    ++      
Sbjct: 551 TFIDKEMVMNMMLWVPNWDGV----IPQPAILKPRPRWTGKQLISMVIPQEISLHA---- 602

Query: 478 TVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
                         EGD +I      P D  +  ++ EL+ G L K  +G     G+  +
Sbjct: 603 -------------PEGDSDI-----PPKDTGLLIQSGELLYGLLKKKNVGAA-AGGIIHL 643

Query: 538 LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK-KGKLISENYEVCN 596
              + G       +N + ++   W+ N G SIGI D  P K+  +K +  + ++  EV  
Sbjct: 644 CYNELGPEGAMAFLNGVQQVVTYWLLNTGHSIGIGDTIPDKQTIEKIQVHIDTQKAEVAK 703

Query: 597 VKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
           +   +    +L+  PG +   T E  ++  LN  R+ AG     SL   N+ + MS+ GS
Sbjct: 704 L-TAQATANELEALPGMNVRATFENKVSMALNSARDQAGTTTQKSLKDSNNAVTMSESGS 762

Query: 657 KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
           KGS INISQM A VGQQ V G+R P GF  R+LPHF +    P A+GFV NS+  GL+ +
Sbjct: 763 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 822

Query: 717 EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDD 776
           EFFFH M GREGL+DTAVKTA+TGY+ RRL+KALEDLS +YD +VRN+ G IVQFLYG+D
Sbjct: 823 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIVQFLYGED 882

Query: 777 GMD 779
           G+D
Sbjct: 883 GLD 885



 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 196/400 (49%), Gaps = 49/400 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1063 NRWDRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKD 1122

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L      +  A+ ++  +E T L  +    +I     +    IA DM+ ++
Sbjct: 1123 IKTPSMAVYLNTKLGTQEQAKKLRSMVEYTNLRSITSVTEIYYDPDIQGTTIAEDMDMVE 1182

Query: 1014 -------------------------DAHLCINADIVKESIVQTPKIKL------------ 1036
                                     D    ++ +I  + + Q  K +             
Sbjct: 1183 SYFLIPDDGQDNTDQQSRWLLRITLDRQKLLDKEIRIDDVAQRIKEEYPNDLAVIFSDNN 1242

Query: 1037 -KQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK---NVLPMVIVKGIKTVERVVIAE--- 1089
              +Q I++   R+ E      + KI  ++   +   ++L  + ++G+  +ER  + +   
Sbjct: 1243 ADEQVIRIRTVRQSEEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGIERAFLTKGTR 1302

Query: 1090 ----KEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
                ++  +  +K++    ++ L   G+ L+ V+  +G+D  +T +N ++++ +  GIEA
Sbjct: 1303 LTVGEDGSELAIKDDPRCTQWYLDTSGSALRDVLAVDGVDASRTYTNDLWQIVEVFGIEA 1362

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
            AR  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SFE
Sbjct: 1363 ARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSFE 1422

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            +T + L  A+  G  D   G+SE +++G   P+GTG   +
Sbjct: 1423 ETVEILLEAAATGELDDCRGISENVMLGQLAPMGTGNFDV 1462


>gi|188532159|gb|ACD63091.1| RNA polymerase II largest subunit [Saruma henryi]
          Length = 1009

 Score =  520 bits (1340), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 305/750 (40%), Positives = 437/750 (58%), Gaps = 39/750 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L    VL + KR++D DC +L LS    RP+ +I+  + +PP  +RPSV+MD S  +E+D
Sbjct: 130 LTAEKVLSVLKRISDEDCILLGLSPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDD 189

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++      A       + LQ  +A Y ++++ G P + Q + RP
Sbjct: 190 LTHQLAMIIRHNENLRRQEKNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 249

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  LTYPE V+
Sbjct: 250 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVT 309

Query: 262 DHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHL 317
            +NI++L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RHL
Sbjct: 310 PYNIDRLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL--GYKVERHL 367

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E
Sbjct: 368 NDGDYVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 427

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
            R E L LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D 
Sbjct: 428 TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 487

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
             ++  P PA+LKP  LWTGKQ+F+++I    N+      T      S     T GD ++
Sbjct: 488 DGKI--PAPAVLKPRPLWTGKQVFNLIIPKQINLL----RTSAWHAESETGFITPGDTQV 541

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
           RIE              EL++G L K  LG      L  V+  + G  A    +     L
Sbjct: 542 RIE------------RGELLAGTLCKKALGTST-GSLIHVIWEEVGPDAARKFLGHTQWL 588

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
              W+  + FSIGI D        +K    I++        IK  +E +L+ +PG    +
Sbjct: 589 VNYWLLQNAFSIGIGDTIADAATMEKINDTITKAKNEVKELIKAAHEKQLEAEPGRTMME 648

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           + E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G
Sbjct: 649 SFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 708

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GFI+R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT+
Sbjct: 709 KRIPYGFINRTLPHFTQDDNGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 768

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL-----N 792
           +TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L      
Sbjct: 769 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAE 828

Query: 793 FDRLLMKV--KATCPPAGQRYLSPQQVSEI 820
           FD++       A   P+   Y+ P+ V ++
Sbjct: 829 FDKVFRYEFDDANWNPS---YMLPEHVEDL 855


>gi|219852750|ref|YP_002467182.1| DNA-directed RNA polymerase subunit A' [Methanosphaerula palustris
           E1-9c]
 gi|219547009|gb|ACL17459.1| DNA-directed RNA polymerase subunit A' [Methanosphaerula palustris
           E1-9c]
          Length = 880

 Score =  520 bits (1340), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 282/725 (38%), Positives = 429/725 (59%), Gaps = 31/725 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++    +++ D+D  +L ++    RPE  I+T + VPP+ +RPS+I++  Q +E+D
Sbjct: 172 LTPADIRARLEKIPDSDLRLLGINPDVARPEWTILTVLPVPPVTMRPSIILENGQRSEDD 231

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N   ++              WE LQ  V  Y++++V G P +  +  RP
Sbjct: 232 LTHKLVDIIRINQRFKENQDAGAPQLIIEDLWELLQYHVTTYLDNEVAGCPPARHRSGRP 291

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK GRFRG+LSGKRV ++ RTVISP+PNL I+EV IPI +A  ++ P RV+
Sbjct: 292 LKTLSQRLKGKDGRFRGSLSGKRVNFSARTVISPNPNLSISEVGIPIGIANEMSVPVRVT 351

Query: 262 DHNIEKLRQCIQNGPDKYP-----GARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
            +NIE+LR  ++ GP++       GA  +  PD     L       +A +++ G  V+R 
Sbjct: 352 PYNIEELRVYVRKGPNREGLKDICGANYVIRPDNRRLRLADGNLETIAEQIEPGWTVERQ 411

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           L DGD+VLFNRQPSLHRMSIM HR ++M  RT R N +VC PYNADFDGDEMN+HVPQTE
Sbjct: 412 LRDGDIVLFNRQPSLHRMSIMAHRIKVMEGRTFRLNPAVCPPYNADFDGDEMNLHVPQTE 471

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           EAR EA +L+ VQ N+ +P+ G  ++    D ++  F++T    ++ +  F  +  Y   
Sbjct: 472 EARAEASILVAVQQNILSPRFGGPIIGGIHDHISGIFMLTHDLRWFAKDDFLYLLKYY-- 529

Query: 437 GMDRVDLPTPA-ILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
             D   +P P  I   +  W+ KQ+FS+++ P+      +N+  K  + +N         
Sbjct: 530 --DFDHMPEPGKIENGIPYWSNKQVFSMIL-PNE-----LNMVFKASSCANC-------- 573

Query: 496 EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
           ++ ++  C  D FV     +LI+G + K ++G  + + + + ++R YG    +  ++ + 
Sbjct: 574 DVCVKDQCERDAFVRILEGQLITGTIDKKSIGAFDGE-ILNRIIRQYGMERAAKFIDDMT 632

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           KLS + I   GFS GIDD    K    +  +++       N +I+ Y +G+L+  PG   
Sbjct: 633 KLSIKGIMIDGFSFGIDDEDLSKTEYGQIDEVLDNATTDVNRRIRIYEDGQLEPMPGRTP 692

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            +TLE  I  +L + R+  G+     L   NS ++M+  G++GS +N++QM  C+GQQSV
Sbjct: 693 EETLEMQIMQVLGKSRDRTGEIAGAHLGLGNSAVLMAVSGARGSMLNLTQMAGCIGQQSV 752

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G R   G+  R+LPHF R  +   A GFV +S+ SGL+ TEFFFH +GGREGLVDTAV+
Sbjct: 753 RGERIVRGYFGRTLPHFKRGDRGADAHGFVKHSYKSGLNPTEFFFHAIGGREGLVDTAVR 812

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR 795
           T+ +GY+ RRLI AL+DL ++YD +VR  G  I+QF YG+DG DP  M G  G+P++   
Sbjct: 813 TSQSGYLQRRLINALQDLKVEYDGTVRTTGRRIIQFRYGEDGTDP--MRGSFGDPVDVKG 870

Query: 796 LLMKV 800
           ++  V
Sbjct: 871 IIESV 875


>gi|401881990|gb|EJT46265.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
           var. asahii CBS 2479]
          Length = 1787

 Score =  520 bits (1340), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 290/702 (41%), Positives = 417/702 (59%), Gaps = 35/702 (4%)

Query: 94  LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKR 149
           + K++ D D  ++ L+    RP+ +I+T + VPP A+RPS+ +DG +  +E+D+T +L  
Sbjct: 215 ILKKIPDEDLLIMGLNAEYARPDWMILTVLPVPPAAVRPSISVDGGAMRSEDDLTYKLGE 274

Query: 150 IIQTNASLQQELVEANSAFKSLAG--WETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFV 206
           I++ +A +++  +EA     S+    ++ LQ  VA Y+++D+ G+P ++Q   RP+    
Sbjct: 275 ILKASAQVRK--LEAEGVPPSVVNEHFDLLQFHVATYMDNDIAGIPQALQKSGRPVKAIR 332

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ +V +P  +A  LTYPERV+ +NI 
Sbjct: 333 ARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTPYNIN 392

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQ-LAVELKSGCIVDRHLEDGDVVLF 325
            L+Q I NGP  YPGAR   Y   T   +  K+R     + L+ G IV+RHL+DGD VLF
Sbjct: 393 YLQQLINNGPATYPGARY--YVKDTGERIDLKYRKSGEPIPLQFGWIVERHLKDGDYVLF 450

Query: 326 NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
           NRQPSLH+MS+M HR ++M + T R N SV +PYNADFDGDEMN+HVPQ+EE R E   +
Sbjct: 451 NRQPSLHKMSMMSHRVKVMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQI 510

Query: 386 MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPT 445
             V   + +P+  + ++   QD L      T +D F D A    +  ++ D    +  P 
Sbjct: 511 AWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDNFCDWAFVQNLLLWLPDWDGTI--PP 568

Query: 446 PAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 505
           PAILKP  +WTGKQL S+ I    N+  + N                     R   +   
Sbjct: 569 PAILKPRPMWTGKQLVSMCIPKGINIAAHDNE--------------------RPSPIDVT 608

Query: 506 DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
           D  V   N EL+ G + K+  G  + +GL  V+ R+ G        + + ++   W+ ++
Sbjct: 609 DQNVLVDNGELVYGTITKSMAGAAS-NGLIHVIFRELGHIKARDFFSAMQRVINFWLLHN 667

Query: 566 GFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITD 625
           GFS+GI D              + E  +     I E    K++ +PG    +TLEA ++ 
Sbjct: 668 GFSVGIGDTIADSATMAAVNNRLVEAKDTVQAFISEAENNKMKPRPGMTIRETLEAAVSG 727

Query: 626 ILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFI 685
            LN+ R+ AGK    +L   N+   M   G+KGS INISQM  CVGQQ V G+R P GF 
Sbjct: 728 ELNKARDWAGKTAQDNLKADNNVKQMVVSGAKGSFINISQMSGCVGQQIVEGKRIPFGFR 787

Query: 686 DRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRR 745
            R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+TGY+ RR
Sbjct: 788 HRTLPHFSKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRR 847

Query: 746 LIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           L+KA+EDL + YD +VRN+GG I+QFLYG+DGMD A ME ++
Sbjct: 848 LVKAMEDLKVGYDGTVRNSGGDIIQFLYGEDGMDGAMMEKQT 889



 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/398 (32%), Positives = 198/398 (49%), Gaps = 46/398 (11%)

Query: 890  IQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII 949
            I+T F+R     V A   +G + AQSIGEP TQMTL TFH+AGV+S ++T GVPR+KEII
Sbjct: 1056 IETLFNR---AIVAAAEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKSVTGGVPRLKEII 1112

Query: 950  NGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIAL 1007
            N A  I TP     L  E +  E  A  +  ++  T L  V  S++I    +L S  I  
Sbjct: 1113 NVATNIRTPATNVYLDPEYSRTERDAHQISRKLTYTRLRDVTASVEIFYDPKLDSTDIEE 1172

Query: 1008 DMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLD--FRKLEIFPPVDKS--KIHFE 1063
            D E + DA   I  + ++  +     ++L+    KVL+  +   +I   +  +  K  F 
Sbjct: 1173 DKEFV-DAFFAIPDEDIRLELHSPWLLRLELDRAKVLEGGYEMADIVSAIVSTVGKDMFV 1231

Query: 1064 LYSLKNVLPMVI-----------------------------------VKGIKTVERVVIA 1088
            ++S  N   ++I                                   + GI  + RV I+
Sbjct: 1232 IHSEDNADKLIIRIRVVAEEKMDGEELLGDEDMFLKRIELTLLDGVELGGIPGITRVFIS 1291

Query: 1089 E-KEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAAR 1147
            E K+    +  E  +++++ L  +G  LQ VM  +G+D  +  SN+ +EV Q LGIEA R
Sbjct: 1292 EGKQTVLSQKGEYDQQQEWFLETDGINLQQVMAVDGVDFTRAYSNNCYEVWQILGIEAGR 1351

Query: 1148 ICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKT 1207
              +  E++  + + G  ++ RHM LL DLM  +G ++ ITR GI + D   L   SFE+T
Sbjct: 1352 NALYKELHGVIASGGSYVNYRHMALLCDLMCNKGHLMSITRHGINRTDAGALSRCSFEET 1411

Query: 1208 ADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             + L  A+  G  D  +GV+E +++G   P+GTG   +
Sbjct: 1412 VEILLEAAAVGDVDDCQGVAENVLLGQMAPMGTGAFDV 1449


>gi|413915234|gb|AFW21479.1| RNA polymerase II largest subunit [Neotyphodium gansuense var.
           inebrians]
          Length = 1761

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 295/696 (42%), Positives = 425/696 (61%), Gaps = 34/696 (4%)

Query: 94  LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS---NENDITERL 147
           + KR+++ D   + L+    RPE LIIT + VPP  +RPS+ MDG+ +   NE+D+T +L
Sbjct: 219 ILKRISEEDLRHMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+ N +++Q + E +    +    E LQ  VA Y+++D+ G P ++Q + RP+    
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIR 338

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LTYPE V+ +NI 
Sbjct: 339 ARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIG 398

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL Q ++NGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL DGD ++FN
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGT-RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFN 457

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R E   L 
Sbjct: 458 RQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELC 517

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
            V NN+ +P+    L+   QD L  ++ I R+DTF D+     M  ++   DG+    +P
Sbjct: 518 LVPNNIVSPQKNGPLMGVVQDSLAGAYKICRRDTFIDKEMVMNMMLWVPNWDGV----IP 573

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAILKP   WTGKQL S++I    ++            +S +    + + +I ++    
Sbjct: 574 QPAILKPRPRWTGKQLISMVIPKEISL------------HSPESSAGQDNADIPLK---- 617

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  +  ++ EL+ G L K  +G+    G+  +   + G       +N + ++   W+ N
Sbjct: 618 -DTGLLIQSGELLYGLLKKKNIGSA-AGGIVHLSYNELGPDGAMAFLNGVQQVVTYWLLN 675

Query: 565 HGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
           +G SIGI D  P K+  +K +  + ++  EV  +   +    +L+  PG +   T E  +
Sbjct: 676 NGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARL-TAQATANELEALPGMNVRATFENKV 734

Query: 624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
           +  LN  R+ AG     SL   N+ + M+  GSKGS INISQM A VGQQ V G+R P G
Sbjct: 735 SMALNSARDQAGTTTQRSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFG 794

Query: 684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
           F  R+LPHF +    P A+GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+TGY+ 
Sbjct: 795 FKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 854

Query: 744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           RRL+KALEDLS +YD +VRN+ G I+QFLYG+DG+D
Sbjct: 855 RRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLD 890



 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 196/401 (48%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1068 NRWDRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKD 1127

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L  +   +  A+ ++  +E T L  +    +I     + S  I  DM+ ++
Sbjct: 1128 IKTPSMAVYLNTHLGTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQSTSIVEDMDMVE 1187

Query: 1014 DAHLCINADIVKESIVQT--------PKIKLKQQHIKVLDF--RKLEIFPP--------- 1054
             ++  I  D    +  Q+         + KL  + IK+ D   R  E +P          
Sbjct: 1188 -SYFLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDN 1246

Query: 1055 -VDKSKIHFELYSLKN----------------------VLPMVIVKGIKTVERV------ 1085
              D+  I        N                      +L  + ++G+  +ER       
Sbjct: 1247 NADEQVIRIRTIRADNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGIERAFLTKGT 1306

Query: 1086 -VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
             ++ + +  +   K++ +  ++ L   G+ L+ V+  +G+D  +T +N +++V +  GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQVVEVFGIE 1366

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+ +G  D   G+SE +++G   P+GTG   +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDV 1467


>gi|302835796|ref|XP_002949459.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f.
           nagariensis]
 gi|300265286|gb|EFJ49478.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f.
           nagariensis]
          Length = 1879

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 303/749 (40%), Positives = 432/749 (57%), Gaps = 62/749 (8%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L     L + KR+ + DC+ L       RP+ +II N+ VPP  +RPSV+MD S   E+D
Sbjct: 186 LTAARALEILKRIPNEDCKALGFDCRFTRPDWMIIQNLPVPPPPVRPSVMMDSSSRCEDD 245

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARP 201
           +T +L  I++TN +++++                LQ  +  Y ++   G+P S Q   RP
Sbjct: 246 LTHKLAEILRTNNAIKKQDSTGTPQHVIAEQIMALQYHITTYFDNSSPGIPRSNQKSGRP 305

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +    +RLKGK GR RGNL GKRV+++ RTVI+ DPN+ I E+ +P  +A  LT+PE V+
Sbjct: 306 IKSISERLKGKSGRIRGNLMGKRVDFSARTVITGDPNIGIDELGVPWSIALNLTFPETVT 365

Query: 262 DHNIEKLRQCIQNGPDKYPG---ARMIRYPDG----TARVLYGKFR-------------- 300
             NIEKL++ + NGP+  PG   A+ I   DG     A +  G  R              
Sbjct: 366 PFNIEKLQKLVDNGPNPPPGETGAKHIIREDGRRINLAVLKSGADRRLEPGDKVGGFFCG 425

Query: 301 -------------NQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 347
                        +++ ++  S   V+RHL +GD+VLFNRQPSLH+MS+M HR RI+P+ 
Sbjct: 426 RSHRRHTYTHSHSHRVFLQRASHLQVERHLTNGDLVLFNRQPSLHKMSMMGHRVRILPYS 485

Query: 348 TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQD 407
           T R N SV  PYNADFDGDEMNMHV QT E R E   LM V  N+ +P+  + ++   QD
Sbjct: 486 TFRLNLSVTTPYNADFDGDEMNMHVAQTHETRAEMRELMMVPRNIVSPQANKPVMGIVQD 545

Query: 408 FLTSSFLITRKDTFYDRAAF--SLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLI 465
            L  + L+T++D F ++  F  ++M     DG     +P P ILKP  LWTGKQ+FS+ +
Sbjct: 546 SLLGTRLMTKRDIFIEKDVFMNTIMGIEDWDGT----VPMPTILKPKPLWTGKQIFSMFV 601

Query: 466 RPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKAT 525
                    VNL  K   Y          ++  ++ M  +D  V  R+ EL++G L K T
Sbjct: 602 PD-------VNLKNKSAWY----------KDTDVQDMSVDDSQVLIRSGELLTGALCKKT 644

Query: 526 LGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKG 585
           +GNG   GL  +   ++G HA  G +N + +    W+  HG SIGI D     +   K  
Sbjct: 645 VGNG-AGGLVHLTWLEHGPHAARGFINNVQRTVNYWVLQHGMSIGIGDTVADAKTMTKVN 703

Query: 586 KLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWR 645
           ++I E        +++Y +  L+ +PG    ++ EA +  +LN+ R+DAGKA   S+   
Sbjct: 704 EIIEEAKRKVKEVVEKYQQNALEAQPGRTIHESFEAQVNQVLNKCRDDAGKAAYMSVDLS 763

Query: 646 NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFV 705
           N+ + M   GSKGS INISQM+ CVGQQ+V G+R P GF +R+LPHF +    P A+GFV
Sbjct: 764 NNIIKMVTAGSKGSNINISQMMGCVGQQNVEGKRIPFGFQNRTLPHFNKDDLGPEARGFV 823

Query: 706 ANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAG 765
            NS+  GL+  EFFFH MGGREGL+DTAVKTA TGY+ RRL+KA+ED+ ++Y  +VRN+ 
Sbjct: 824 GNSYLRGLTPQEFFFHAMGGREGLIDTAVKTASTGYIQRRLVKAMEDMVVRYGGTVRNSQ 883

Query: 766 GCIVQFLYGDDGMDPANMEGKSGEPLNFD 794
           G +VQFLYG+DGMD   +E ++ E L +D
Sbjct: 884 GDVVQFLYGEDGMDAVRIESQTFEHLKWD 912



 Score =  176 bits (445), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 123/418 (29%), Positives = 205/418 (49%), Gaps = 59/418 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            + +K  +  +    +R+ +     G  +G + AQS+GEP TQMTL TFHFAGV++ N+T 
Sbjct: 1062 LNQKAFDWLLGEIETRFFLALSHPGDCVGTVAAQSLGEPTTQMTLNTFHFAGVSAKNVTL 1121

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIE----------------- 981
            GVPR+ E+IN AK I TP +T  L     +N++ A+ V+ ++E                 
Sbjct: 1122 GVPRLTELINLAKNIKTPTLTVHLLPGLRENKDRAKEVQAKLEYTCFKNVVKTTEIWYDP 1181

Query: 982  -------KTLLGQ----------VAKSIKIVMTSRLASIVIALDME--TIQDAHLCINA- 1021
                   +T++G+          +A    + +  RL+  ++  ++   T+ D  L + A 
Sbjct: 1182 VDPGNPNQTIIGEDEEMLSSYYDLAGEEDLAVLPRLSHWLLRFELNRGTMLDKGLTLGAV 1241

Query: 1022 ---------DIVKESIV--QTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNV 1070
                     D +   +      K+ ++ + +K  +  K E   P + +     +  L   
Sbjct: 1242 QKALQDEWEDFINVLVNDDNAEKLIMRIRVMKTEEASKDESADPTEDT-----MLKLSAA 1296

Query: 1071 LPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYR---LLVEGTGLQAVMGAEGIDGC 1127
            +  V + G+  + +V I   E +    +E G  +KY    L  EG  L+ V+  EG+D  
Sbjct: 1297 IMDVRLHGVPNIRKVFI-RAENQHIYDRERGSFRKYEEWILDTEGINLEQVLAFEGVDPR 1355

Query: 1128 KTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGIT 1187
            +T SN I EV + LGIEAAR  ++ E+   +   G  ++ RH+  L D+MT +G ++ IT
Sbjct: 1356 RTMSNSIIEVLEVLGIEAARAALLKEVRNVISFDGSYVNYRHLACLVDIMTCKGCLMAIT 1415

Query: 1188 RFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            R GI +     +   SFE+T D L+ A++ G  DR+ GVS+ I+MG   PLGTG   +
Sbjct: 1416 RHGINRNGNGPMTQCSFEETVDILYRAAMFGERDRLTGVSDNIMMGNMCPLGTGAFDL 1473


>gi|45935325|gb|AAS79684.1| RNA polymerase II large subunit [Thuja occidentalis]
          Length = 1013

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 302/718 (42%), Positives = 427/718 (59%), Gaps = 29/718 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D +C++L L+    RP+ +I+  + VPP  +RPSV+MD +  +E+D
Sbjct: 134 LSAERVLSVLKRISDEECQLLGLNPKYARPDWMILQVLPVPPPPVRPSVMMDTTSRSEDD 193

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++      A       + LQ  +A Y ++++ G P + Q + RP
Sbjct: 194 LTHQLAMIIRHNENLKKQEKTGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 253

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I E+ +P  +A  LTYPE V+
Sbjct: 254 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVT 313

Query: 262 DHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHL 317
            +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RHL
Sbjct: 314 PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL--GYKVERHL 371

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            DGD VLFNRQPSLH+MSIM HR RIMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E
Sbjct: 372 NDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 431

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
            R E L LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D 
Sbjct: 432 TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 491

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
             ++  P P ILKP  LWTGKQ+F+++I    N+  Y     + +T       T GD  +
Sbjct: 492 DGKI--PAPTILKPRPLWTGKQVFNLIIPKQINLIRYSAWHAESETG----FITPGDTCV 545

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
           RIE              E+ISG L K TLG  +   L  V+  + G  A    +     L
Sbjct: 546 RIE------------KGEVISGTLCKKTLGTSS-GSLIHVIWEEVGPDAARKFLGHTQWL 592

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
              W+   GFSIGI D        +   + IS+        IK   + +L+ +PG    +
Sbjct: 593 VNYWLLQQGFSIGIGDTIADAATMEVINETISKAKNEVKQLIKAAQDKQLEAEPGRTMME 652

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           + E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G
Sbjct: 653 SFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 712

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +  K P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT+
Sbjct: 713 KRIPYGFDGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 772

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR 795
           +TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L   R
Sbjct: 773 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKR 830


>gi|45935327|gb|AAS79685.1| RNA polymerase II large subunit [Taxus canadensis]
          Length = 1013

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 301/724 (41%), Positives = 427/724 (58%), Gaps = 34/724 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR+TD +C++L L+    RP+ +I+  + VPP  +RPSV+MD +  +E+D
Sbjct: 134 LSAERVLSVLKRITDEECQMLGLNPKYSRPDWMILQVLPVPPPPVRPSVMMDTTSRSEDD 193

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++      A       + LQ  +A Y ++++ G P + Q + RP
Sbjct: 194 LTHQLAMIIRHNETLKKQEKTGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 253

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I E+ +P  +A  LTYPE V+
Sbjct: 254 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVT 313

Query: 262 DHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHL 317
            +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RHL
Sbjct: 314 PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL--GYKVERHL 371

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            DGD VLFNRQPSLH+MSIM HR RIMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E
Sbjct: 372 NDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 431

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
            R E L LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D 
Sbjct: 432 TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 491

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
             ++  P P ILKP  LWTGKQ+F+++I    N+       +++  +           E 
Sbjct: 492 DGKI--PAPTILKPRPLWTGKQVFNLIIPKQINL-------IRQSAWH---------AES 533

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
               + P D  V     E++SG L K TLG  +   L  V+  + G  A    +     L
Sbjct: 534 ETGFITPGDTIVRIEKGEVLSGTLCKKTLGTSS-GSLIHVIWEEVGPDAARKFLGHTQWL 592

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
              W+   GFSIGI D        +   + IS+        IK   + +L+ +PG    +
Sbjct: 593 VNYWLLQQGFSIGIGDTIADAATMEVINETISKAKHEVKQLIKAAQDKQLEAEPGRTMME 652

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           + E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G
Sbjct: 653 SFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 712

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +  K P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT+
Sbjct: 713 KRIPYGFDGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 772

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +       D L 
Sbjct: 773 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ-----KLDSLK 827

Query: 798 MKVK 801
           MK K
Sbjct: 828 MKKK 831


>gi|322712011|gb|EFZ03584.1| DNA-directed RNA polymerase II largest subunit [Metarhizium
           anisopliae ARSEF 23]
          Length = 1755

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 302/723 (41%), Positives = 429/723 (59%), Gaps = 48/723 (6%)

Query: 76  KAAVNVA---------TYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVP 123
           KAA +VA         T  + P     + +R+++ D   + L+    RPE +I+T + VP
Sbjct: 192 KAAFDVAQEDGPKRRETVPITPEMAHGILRRISEEDLRHMGLNSDYARPEWMILTVLPVP 251

Query: 124 PIAIRPSVIMDGSQS---NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
           P  +RPS+ MDG+ +   NE+D+T +L  II+ N +++Q + E +    +    E LQ  
Sbjct: 252 PPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYH 311

Query: 181 VAQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
           VA Y+++D+ G P ++Q   RP+     RLKGK+GR RGNL GKRV+++ RTVI+ D NL
Sbjct: 312 VATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANL 371

Query: 240 KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF 299
            + EV +P  +AR LTYPE V+ +NI KL Q ++NGP+++PGA+ +   DGT R+     
Sbjct: 372 SLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRADGT-RIDLRHH 430

Query: 300 RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
           R    + L+ G  V+RHL DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PY
Sbjct: 431 RRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPY 490

Query: 360 NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
           NADFDGDEMN+HVPQTEE R E   L  V NN+ +P+    L+   QD L   + + R+D
Sbjct: 491 NADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRD 550

Query: 420 TFYDRAAFSLMCCYM--GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNL 477
           TF D+     M  ++   DG+    +P PAILKP   WTGKQL S++I    ++      
Sbjct: 551 TFIDKEMVMNMMLWVPNWDGV----IPQPAILKPRPRWTGKQLISMVIPQEISLHA---- 602

Query: 478 TVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
                         EGD +I ++     D  +  ++ EL+ G L K  +G     G+  +
Sbjct: 603 -------------PEGDSDIPLK-----DTGLLIQSGELLYGLLKKKNVGAA-AGGIIHL 643

Query: 538 LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK-KGKLISENYEVCN 596
              + G       +N + ++   W+ N G SIGI D  P K+  +K +  + ++  EV  
Sbjct: 644 CYNELGPDGAMAFLNGVQQVVTYWLLNTGHSIGIGDTVPDKQTIEKIQVHIDTQKAEVAK 703

Query: 597 VKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
           +   +    +L+  PG +   T E  ++  LN  R+ AG     SL   N+ + MS+ GS
Sbjct: 704 L-TAQATANELEALPGMNVRATFENKVSMALNSARDQAGTTTQKSLKDSNNAVTMSESGS 762

Query: 657 KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
           KGS INISQM A VGQQ V G+R P GF  R+LPHF +    P A+GFV NS+  GL+ +
Sbjct: 763 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 822

Query: 717 EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDD 776
           EFFFH M GREGL+DTAVKTA+TGY+ RRL+KALEDLS +YD +VRN+ G IVQFLYG+D
Sbjct: 823 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIVQFLYGED 882

Query: 777 GMD 779
           G+D
Sbjct: 883 GLD 885



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 196/400 (49%), Gaps = 49/400 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1063 NRWDRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKD 1122

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L      +  A+ ++  +E T L  +    +I     +    IA DM+ ++
Sbjct: 1123 IKTPSMAVYLNTKLGTQEQAKKLRSMVEYTNLRSITSVTEIYYDPDIQGTTIAEDMDMVE 1182

Query: 1014 -------------------------DAHLCINADIVKESIVQTPKIKL------------ 1036
                                     D    ++ +I  + + Q  K +             
Sbjct: 1183 SYFLIPDDGQDNTDQQSRWLLRITLDRQKLLDKEIRIDDVAQRIKEEYPNDLAVIFSDNN 1242

Query: 1037 -KQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK---NVLPMVIVKGIKTVERVVIAE--- 1089
              +Q I++   R+ +      + KI  ++   +   ++L  + ++G+  +ER  + +   
Sbjct: 1243 ADEQVIRIRTVRQSDEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGIERAFLTKGTR 1302

Query: 1090 ----KEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
                ++  +  +K++    ++ L   G+ L+ V+  +G+D  +T +N ++++ +  GIEA
Sbjct: 1303 LTVGEDGSELAIKDDPRCTQWYLDTSGSALRDVLAVDGVDASRTYTNDLWQIVEVFGIEA 1362

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
            AR  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SFE
Sbjct: 1363 ARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSFE 1422

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            +T + L  A+  G  D   G+SE +++G   P+GTG   +
Sbjct: 1423 ETVEILLEAAATGELDDCRGISENVMLGQLAPMGTGNFDV 1462


>gi|188532155|gb|ACD63089.1| RNA polymerase II largest subunit [Persea americana]
          Length = 1009

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 303/722 (41%), Positives = 424/722 (58%), Gaps = 34/722 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D DC +L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+D
Sbjct: 130 LSAERVLSVLKRISDEDCMLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDD 189

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++      A       + LQ  +A Y ++++ G P + Q + RP
Sbjct: 190 LTHQLAMIIRHNENLRKQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 249

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  LTYPE V+
Sbjct: 250 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVT 309

Query: 262 DHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHL 317
            +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RHL
Sbjct: 310 PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYSKKSSDHHLEL--GYKVERHL 367

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E
Sbjct: 368 NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 427

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
            R E L LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D 
Sbjct: 428 TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 487

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
             ++  P PAILKP  LWTGKQ+F+++I    N+      T    + S     T GD ++
Sbjct: 488 DGKI--PAPAILKPRPLWTGKQVFNLIIPKQINLIX----TSAWHSESETGFITPGDTQV 541

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
           RIE              EL++G L K TLG      L  V+  + G  A    +     L
Sbjct: 542 RIE------------KGELLAGTLCKKTLGTST-GSLIHVIWEEVGPDAARKFLGHTQWL 588

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
              W+  +GFSIGI D        +K  + I +        IK   E  L+ +PG    +
Sbjct: 589 VNYWLLQNGFSIGIGDTIADAATMEKINETILKAKSEVKDLIKAAQEKSLEAEPGRTMME 648

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           + E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G
Sbjct: 649 SFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 708

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P  +GFV NS+  GL+  EFFFH MGGREGL+DTAVKT+
Sbjct: 709 KRIPYGFNGRTLPHFTKDDYGPEXRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 768

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +       D L 
Sbjct: 769 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK-----LDSLK 823

Query: 798 MK 799
           MK
Sbjct: 824 MK 825


>gi|413915238|gb|AFW21481.1| RNA polymerase II largest subunit [Aciculosporium take]
          Length = 1761

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 301/723 (41%), Positives = 433/723 (59%), Gaps = 43/723 (5%)

Query: 76  KAAVNVA---------TYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVP 123
           KAA +VA         T  + P     + KR+++ D   + L+    RPE LIIT + VP
Sbjct: 192 KAAFDVAQEDGPKRRETVPITPEMAHGILKRISEEDLRNMGLNSDYARPEWLIITVLPVP 251

Query: 124 PIAIRPSVIMDGSQS---NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
           P  +RPS+ MDG+ +   NE+D+T +L  II+ N +++Q + E +    +    E LQ  
Sbjct: 252 PPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYH 311

Query: 181 VAQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
           VA Y+++D+ G P ++Q   RP+     RLKGK+GR RGNL GKRV+++ RTVI+ D NL
Sbjct: 312 VATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANL 371

Query: 240 KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF 299
            + EV +P  +AR LTYPE V+ +NI +L   ++NGP+++PGA+ +   DGT R+     
Sbjct: 372 SLHEVGVPRSIARTLTYPETVTPYNIGRLHHLVENGPNEHPGAKYVIRADGT-RIDLRHH 430

Query: 300 RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
           R    + L+ G  V+RHL DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PY
Sbjct: 431 RRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPY 490

Query: 360 NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
           NADFDGDEMN+HVPQTEE R E   L  V NN+ +P+    L+   QD L  ++ I R+D
Sbjct: 491 NADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRD 550

Query: 420 TFYDRAAFSLMCCYM--GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNL 477
           TF D+     M  ++   DG+    +P PAILKP   WTGKQL S++I    ++      
Sbjct: 551 TFIDKEMVMNMMLWVPNWDGV----IPQPAILKPRPRWTGKQLISMVIPKEISL------ 600

Query: 478 TVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
                 +S +    + + +I ++     D  +  ++ EL+ G L K  +G+    G+  +
Sbjct: 601 ------HSPESSGAQDNADIPLK-----DTGLLIQSGELLYGLLRKKNIGSA-AGGIVHL 648

Query: 538 LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK-KGKLISENYEVCN 596
              + G       +N + ++   W+ N+G SIGI D  P K+  +K +  + ++  EV  
Sbjct: 649 SYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVAR 708

Query: 597 VKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
           +   +    +L+  PG +   T E  ++  LN  R+ AG     SL   N+ + M++ GS
Sbjct: 709 L-TAQATANELEALPGMNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGS 767

Query: 657 KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
           KGS INISQM A VGQQ V G+R P GF  R+LPHF +    P A+GFV NS+  GL+ T
Sbjct: 768 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPT 827

Query: 717 EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDD 776
           EFFFH M GREGL+DTAVKTA+TGY+ RRL+KALEDLS +YD +VRN+ G I+QFLYG+D
Sbjct: 828 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGED 887

Query: 777 GMD 779
           G+D
Sbjct: 888 GLD 890



 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 199/401 (49%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1068 NRWDRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKD 1127

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L  +   +  A+ ++  +E T L  +    +I     +    IA DM+ ++
Sbjct: 1128 IKTPSMAVYLNTHLGTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIAEDMDMVE 1187

Query: 1014 DAHLCINADIVKESIVQT--------PKIKLKQQHIKVLDF--RKLEIFPP--------- 1054
             ++  I  D    +  Q+         + KL  + IK+ D   R  E +P          
Sbjct: 1188 -SYFLIPDDAQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPNDLAVIFSDN 1246

Query: 1055 -VDKSKIHFE---------------------LYSLK-NVLPMVIVKGIKTVERV------ 1085
              D+  I                        L  L+ ++L  + ++G+  VER       
Sbjct: 1247 NADEQVIRIRTIRADSEKDEEGERRIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGT 1306

Query: 1086 -VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
             ++ + +  +   K++ +  ++ L   G+ L+ V+  +G+D  +T +N ++++ +  GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSF 1426

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+ +G  D   G+SE +++G   P+GTG   +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDV 1467


>gi|413915226|gb|AFW21475.1| RNA polymerase II largest subunit [Epichloe amarillans]
          Length = 1752

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 294/696 (42%), Positives = 425/696 (61%), Gaps = 34/696 (4%)

Query: 94  LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS---NENDITERL 147
           + KR+++ D   + L+    RPE LIIT + VPP  +RPS+ MDG+ +   NE+D+T +L
Sbjct: 219 ILKRISEEDLRQMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFV 206
             II+ N +++Q + E +    +    E LQ  VA Y+++D+ G P ++Q   RP+    
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIR 338

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LTYPE V+ +NI 
Sbjct: 339 ARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIG 398

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL Q ++NGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL DGD ++FN
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGT-RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFN 457

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R E   L 
Sbjct: 458 RQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELC 517

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
            V NN+ +P+    L+   QD L  ++ + R+DTF D+     M  ++   DG+    +P
Sbjct: 518 LVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGV----IP 573

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAILKP   WTGKQL S++I    ++            +S +    + + +I ++    
Sbjct: 574 QPAILKPRPRWTGKQLISMVIPKEISL------------HSPESSGGQDNADIPLK---- 617

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  +  ++ EL+ G L K  +G+    G+  +   + G       +N + ++   W+ N
Sbjct: 618 -DTGLLIQSGELLYGLLKKKNIGSA-AGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLN 675

Query: 565 HGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
           +G SIGI D  P K+  +K +  + ++  EV  +   +    +L+  PG +   T E  +
Sbjct: 676 NGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARL-TAQATANELEALPGMNVRATFENKV 734

Query: 624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
           +  LN  R+ AG     SL   N+ + M++ GSKGS INISQM A VGQQ V G+R P G
Sbjct: 735 SMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFG 794

Query: 684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
           F  R+LPHF +    P A+GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+TGY+ 
Sbjct: 795 FKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 854

Query: 744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           RRL+KALEDLS +YD +VRN+ G I+QFLYG+DG+D
Sbjct: 855 RRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLD 890



 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 195/401 (48%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1068 NRWDRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKD 1127

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L  +   +  A+ ++  +E T L  +    +I     +    I  DM+ ++
Sbjct: 1128 IKTPSMAVYLNTHLGTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIVEDMDMVE 1187

Query: 1014 DAHLCINADIVKESIVQT--------PKIKLKQQHIKVLDF--RKLEIFPP--------- 1054
             ++  I  D    +  Q+         + KL  + IK+ D   R  E +P          
Sbjct: 1188 -SYFLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDN 1246

Query: 1055 -VDKSKIHFELYSLKN----------------------VLPMVIVKGIKTVERV------ 1085
              D+  I        N                      +L  + ++G+  VER       
Sbjct: 1247 NADEQVIRIRTIRTDNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGT 1306

Query: 1086 -VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
             ++ + +  +   K++ +  ++ L   G+ L+ V+  +G+D  +T +N ++++ +  GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+ +G  D   G+SE +++G   P+GTG   +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDV 1467


>gi|413915246|gb|AFW21485.1| RNA polymerase II largest subunit [Claviceps purpurea]
          Length = 1756

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 297/715 (41%), Positives = 431/715 (60%), Gaps = 34/715 (4%)

Query: 83  TYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS- 138
           T  + P   L + KR+++ D   + L+    RPE LIIT + VPP  +RPS+ MDG+ + 
Sbjct: 210 TTPITPETALGILKRISEQDLRHMGLNADYARPEWLIITVLPVPPPPVRPSISMDGTSTG 269

Query: 139 --NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
             NE+D+T +L  II+ N +++Q + E +    +    E LQ  VA Y+++D+ G P ++
Sbjct: 270 MRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 329

Query: 197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LT
Sbjct: 330 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 389

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
           YPE V+ +NI +L Q ++NGP+++PGA+ +   DGT R+     R    + L+ G  V+R
Sbjct: 390 YPETVTPYNIGRLHQLVENGPNEHPGAKYVIRADGT-RIDLRHHRRAAQISLEYGWKVER 448

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           HL DGD ++FNRQPSLH+ S+M H+ R+MP+ T R N SV +PYNADFDGDEMN+HVPQT
Sbjct: 449 HLMDGDYIIFNRQPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQT 508

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM- 434
           EE R E   L  V NN+ +P+    L+   QD L  ++ + R+DTF ++     +  ++ 
Sbjct: 509 EETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKMCRRDTFIEKEMVMNLMLWVP 568

Query: 435 -GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
             DG+    +P PAILKP   WTGKQ+ S++I              KE +    L   E 
Sbjct: 569 NWDGV----IPQPAILKPRPRWTGKQIISMVI-------------PKEIS----LNSPES 607

Query: 494 DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
            + +    +   D  +  ++ EL+ G L K  +G+    G+  +   + G       +N 
Sbjct: 608 ADALDNADIPLKDTGLLIQSGELLYGLLKKKNIGSA-AGGIVHLSYNELGPEGAMAFLNG 666

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPG 612
           + ++   W+ N+G SIGI D  P K+  +K +  + ++  EV  +   +    +L+  PG
Sbjct: 667 VQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQAHIDTQKAEVARL-TAQATANELEALPG 725

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
            +   T E  ++  LN  R+ AG     SL   N+ + M++ GSKGS INISQM A VGQ
Sbjct: 726 MNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQ 785

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           Q V G+R P GF  R+LPHF +    P A+GFV NS+  GL+ +EFFFH M GREGL+DT
Sbjct: 786 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT 845

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           AVKTA+TGY+ RRL+KALEDLS QYD +VRN+ G +VQFLYG+DG+D   +E +S
Sbjct: 846 AVKTAETGYIQRRLVKALEDLSAQYDGTVRNSLGDVVQFLYGEDGLDAMCIEKQS 900



 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/404 (29%), Positives = 201/404 (49%), Gaps = 57/404 (14%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    +  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1070 NRWARSFISPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKD 1129

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L  +   +  A+ ++  +E T L  +    +I     +    I  DM+ ++
Sbjct: 1130 IKTPSMAVYLNTHLGTQEQAKKLRSLVEFTNLRSITAVTEIYYDPDIQGTTIVEDMDMVE 1189

Query: 1014 DAHLCIN--ADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFE-----LYS 1066
               L  +   D ++E      +I L +Q  K+LD ++++I     + K  F+     +YS
Sbjct: 1190 SYFLIPDDSQDTIEEQSRWLLRITLDRQ--KLLD-KEIKIDDVAQRIKEEFKHDLAIIYS 1246

Query: 1067 LKN-------------------------------------VLPMVIVKGIKTVER----- 1084
              N                                     +L  + ++G++ VER     
Sbjct: 1247 DNNADEQVIRIRTVGSDKVKDEEGNMNIEDDVMLKRLESHILDTLTLRGVRGVERAFLTK 1306

Query: 1085 ---VVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTL 1141
               +VI +   E  K K++ +  ++ L   G+ L+ V+   G+D  +T +N ++++ +  
Sbjct: 1307 GTRLVIDDDGSELAK-KDDEKCTQWYLDTSGSSLREVLSVNGVDPTRTYTNDLWQIVEVF 1365

Query: 1142 GIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLML 1201
            GIEAAR  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM 
Sbjct: 1366 GIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGIISAVTRHGINRADTGALMR 1425

Query: 1202 ASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             SFE+T + L  A+ +G  D   G+SE I++G   P+GTG   +
Sbjct: 1426 CSFEETVEILLEAAASGELDDCRGISENIMLGQLAPMGTGSFDV 1469


>gi|413915232|gb|AFW21478.1| RNA polymerase II largest subunit [Neotyphodium gansuense]
          Length = 1761

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 295/696 (42%), Positives = 425/696 (61%), Gaps = 34/696 (4%)

Query: 94  LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS---NENDITERL 147
           + KR+++ D   + L+    RPE LIIT + VPP  +RPS+ MDG+ +   NE+D+T +L
Sbjct: 219 ILKRISEEDLRHMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+ N +++Q + E +    +    E LQ  VA Y+++D+ G P ++Q + RP+    
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIR 338

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LTYPE V+ +NI 
Sbjct: 339 ARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIG 398

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL Q ++NGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL DGD ++FN
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGT-RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFN 457

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R E   L 
Sbjct: 458 RQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELC 517

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
            V NN+ +P+    L+   QD L  ++ I R+DTF D+     M  ++   DG+    +P
Sbjct: 518 LVPNNIVSPQKNGPLMGVVQDSLAGAYKICRRDTFIDKEMVMNMMLWVPNWDGV----IP 573

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAILKP   WTGKQL S++I    ++            +S +    + + +I ++    
Sbjct: 574 QPAILKPRPRWTGKQLISMVIPKEISL------------HSPESSGGQDNADIPLK---- 617

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  +  ++ EL+ G L K  +G+    G+  +   + G       +N + ++   W+ N
Sbjct: 618 -DTGLLIQSGELLYGLLKKKNIGSA-AGGIVHLSYNELGPDGAMAFLNGVQQVVTYWLLN 675

Query: 565 HGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
           +G SIGI D  P K+  +K +  + ++  EV  +   +    +L+  PG +   T E  +
Sbjct: 676 NGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARL-TAQATANELEALPGMNVRATFENKV 734

Query: 624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
           +  LN  R+ AG     SL   N+ + M+  GSKGS INISQM A VGQQ V G+R P G
Sbjct: 735 SMALNSARDQAGTTTQRSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFG 794

Query: 684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
           F  R+LPHF +    P A+GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+TGY+ 
Sbjct: 795 FKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 854

Query: 744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           RRL+KALEDLS +YD +VRN+ G I+QFLYG+DG+D
Sbjct: 855 RRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLD 890



 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 195/401 (48%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1068 NRWDRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKD 1127

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L  +   +  A+ ++  +E T L  +    +I     +    I  DM+ ++
Sbjct: 1128 IKTPSMAVYLNTHLGTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIVEDMDMVE 1187

Query: 1014 DAHLCINADIVKESIVQT--------PKIKLKQQHIKVLDF--RKLEIFPP--------- 1054
             ++  I  D    +  Q+         + KL  + IK+ D   R  E +P          
Sbjct: 1188 -SYFLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDN 1246

Query: 1055 -VDKSKIHFELYSLKN----------------------VLPMVIVKGIKTVERV------ 1085
              D+  I        N                      +L  + ++G+  +ER       
Sbjct: 1247 NADEQVIRIRTIRADNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGIERAFLTKGT 1306

Query: 1086 -VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
             ++ + +  +   K++ +  ++ L   G+ L+ V+  +G+D  +T +N +++V +  GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQVVEVFGIE 1366

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+ +G  D   G+SE +++G   P+GTG   +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDV 1467


>gi|413915220|gb|AFW21472.1| RNA polymerase II largest subunit [Epichloe elymi]
          Length = 1754

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 294/696 (42%), Positives = 426/696 (61%), Gaps = 34/696 (4%)

Query: 94  LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS---NENDITERL 147
           + KR+++ D   + L+    RPE LIIT + VPP  +RPS+ MDG+ +   NE+D+T +L
Sbjct: 219 ILKRISEEDLRQMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+ N +++Q + E +    +    E LQ  VA Y+++D+ G P ++Q + RP+    
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIR 338

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LTYPE V+ +NI 
Sbjct: 339 ARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIG 398

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL Q ++NGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL DGD ++FN
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGT-RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFN 457

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R E   L 
Sbjct: 458 RQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELC 517

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
            V NN+ +P+    L+   QD L  ++ + R+DTF D+     M  ++   DG+    +P
Sbjct: 518 LVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGV----IP 573

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAILKP   WTGKQL S++I    ++            +S +    + + +I ++    
Sbjct: 574 QPAILKPRPRWTGKQLISMVIPKEISL------------HSPESSGGQDNADIPLK---- 617

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  +  ++ EL+ G L K  +G+    G+  +   + G       +N + ++   W+ N
Sbjct: 618 -DTGLLIQSGELLYGLLKKKNIGSA-AGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLN 675

Query: 565 HGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
           +G SIGI D  P K+  +K +  + ++  EV  +   +    +L+  PG +   T E  +
Sbjct: 676 NGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARL-TAQATANELEALPGMNVRATFENKV 734

Query: 624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
           +  LN  R+ AG     SL   N+ + M++ GSKGS INISQM A VGQQ V G+R P G
Sbjct: 735 SMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFG 794

Query: 684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
           F  R+LPHF +    P A+GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+TGY+ 
Sbjct: 795 FKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 854

Query: 744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           RRL+KALEDLS +YD +VRN+ G I+QFLYG+DG+D
Sbjct: 855 RRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLD 890



 Score =  177 bits (449), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 192/394 (48%), Gaps = 51/394 (12%)

Query: 902  VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIIT 961
            V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK I TP + 
Sbjct: 1075 VSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIKTPSMA 1134

Query: 962  AELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCIN 1020
              L  +   +  A+ ++  +E T L  +    +I     +    I  DM+ ++ ++  I 
Sbjct: 1135 VYLNTHLGTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIVEDMDMVE-SYFLIP 1193

Query: 1021 ADIVKESIVQT--------PKIKLKQQHIKVLDF--RKLEIFPP----------VDKSKI 1060
             D    +  Q+         + KL  + IK+ D   R  E +P            D+  I
Sbjct: 1194 DDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDNNADEQVI 1253

Query: 1061 HFELYSLKN----------------------VLPMVIVKGIKTVERV-------VIAEKE 1091
                    N                      +L  + ++G+  VER        ++ + +
Sbjct: 1254 RIRTIRTDNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGTRLVVDDD 1313

Query: 1092 KEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICII 1151
              +   K++ +  ++ L   G+ L+ V+  +G+D  +T +N ++++ +  GIEAAR  ++
Sbjct: 1314 GAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIEAARSALV 1373

Query: 1152 DEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHL 1211
             E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SFE+T + L
Sbjct: 1374 KELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSFEETVEIL 1433

Query: 1212 FNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
              A+ +G  D   G+SE +++G   P+GTG   +
Sbjct: 1434 LEAAASGELDDCRGISENVMLGQLAPMGTGNFDV 1467


>gi|405965007|gb|EKC30438.1| DNA-directed RNA polymerase II subunit RPB1 [Crassostrea gigas]
          Length = 3055

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 292/712 (41%), Positives = 431/712 (60%), Gaps = 36/712 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L    V  +FKR++D +C+VL +  R   P+ +I+T + VPP+A+RP+V+M GS  N++
Sbjct: 208 VLTADRVHEIFKRISDDECQVLGMDHRYSRPDWMIVTVMPVPPLAVRPAVVMFGSARNQD 267

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQVA 199
           D+T +L  II+ N  L++   E N A   +   +   LQ  VA + ++++ G+P ++Q +
Sbjct: 268 DLTHKLADIIKANNQLRRN--EQNGAASHIISEDMKMLQYHVATFTDNELPGLPKAVQKS 325

Query: 200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RPL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ +T+PE
Sbjct: 326 GRPLKSVKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPE 385

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHL 317
            V+  NI+++++ ++ G ++YPGA+ I   +G    L  +F  + + + L+ G  V+RH+
Sbjct: 386 LVTPFNIDRMQELVRRGANQYPGAKYIIRDNGERIDL--RFHPKASDLHLQIGYKVERHM 443

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
           +D D ++FNRQP+LH+MS+MCH+ +++PW T R N SV  PYNADFDGDEMN+H+PQ+ E
Sbjct: 444 QDNDYIVFNRQPTLHKMSMMCHKVKVLPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 503

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMG 435
            + E   L  V   + TP+    ++   QD LT+   +T++D F DR      LM     
Sbjct: 504 TKAEISNLALVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLDRGQVMNLLMFLPRW 563

Query: 436 DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
           DG     +P PAILKP  LWTGKQLFS++I    N           +T+S     T  DE
Sbjct: 564 DGH----VPQPAILKPKPLWTGKQLFSLVIPGRTNCI---------RTHS-----THPDE 605

Query: 496 EIR--IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
           E +   + + P D  V   +  LISG L K TLG  +   L  V+  +YG          
Sbjct: 606 EDKGPYKWISPGDTKVLIEDGMLISGILCKKTLGTSS-GSLAHVVFMEYGWVIAGEMYGH 664

Query: 554 LAKLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
           +  L   W+   G SIGI D +   +   D +  +    ++V  V  K +N+  L+  PG
Sbjct: 665 IQTLVNNWLLLEGHSIGIGDTIADPQTYIDIQDTIKKAKHDVIEVIEKAHNDD-LEPTPG 723

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
               QT E ++  ILN  R+  G     SL   N+   M   GSKGS INISQ++ACVGQ
Sbjct: 724 NTLRQTFENMVNRILNDARDKTGSKAQKSLSDYNNFKAMVVAGSKGSKINISQVIACVGQ 783

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           Q+V G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DT
Sbjct: 784 QNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT 843

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           AVKTA+TGY+ RRLIKA+E + ++YD +VRN    +VQ  YG+DG+D  ++E
Sbjct: 844 AVKTAETGYIQRRLIKAMESVMVKYDGTVRNQVEQLVQLRYGEDGLDATHVE 895



 Score =  175 bits (444), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 131/420 (31%), Positives = 203/420 (48%), Gaps = 61/420 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    SR++  +   G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T 
Sbjct: 1053 LSSEAFEWLIGEVESRFQQAQAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTL 1112

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN +K+  TP +T  L  +   +   A+ V  R+E T L +V  +  I    
Sbjct: 1113 GVPRLKEIINISKKPKTPSLTVYLIGQAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDP 1172

Query: 999  RLASIVIA----------------------------LDMETIQDAHL------------- 1017
               + VI+                            LD + + D  L             
Sbjct: 1173 DPQNTVISEDQEWVNVYYEMPDFDVSKISAWLLRIELDRKRMTDKKLTMEQISEKITAGF 1232

Query: 1018 -----CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NVL 1071
                 CI  D   E +V   +I +     K+ +  ++     VDK +    L  ++ N+L
Sbjct: 1233 GDDLNCIFNDDNAEKLVLRIRI-MNSDESKMQNEEEI-----VDKMEDDVFLRCIEANLL 1286

Query: 1072 PMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGID 1125
              + ++GI+ + +V +     E +K   + E GE K   ++ L  +GT L  V+    +D
Sbjct: 1287 SDMTLQGIEAIAKVYMHLPNTEDKKRISITEEGEFKAVAEWILETDGTALMKVLSQRDVD 1346

Query: 1126 GCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLG 1185
              +T +N I EV   LGIEA R  I  E+N  +   G  ++ RH+ LL D MT +G ++ 
Sbjct: 1347 PIRTTTNDIVEVFSILGIEAVRKSIEKEMNHVISFDGSYVNYRHLSLLCDSMTAKGHLMA 1406

Query: 1186 ITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            ITR GI + +   L   SFE+T D L  A+ +G  D ++GVSECII+G    +GTG   +
Sbjct: 1407 ITRHGINRQETGALARCSFEETVDILMEAASHGEMDPMKGVSECIIVGQLARIGTGCFDL 1466


>gi|413915224|gb|AFW21474.1| RNA polymerase II largest subunit [Epichloe typhina]
          Length = 1746

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 294/696 (42%), Positives = 426/696 (61%), Gaps = 34/696 (4%)

Query: 94  LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS---NENDITERL 147
           + KR+++ D   + L+    RPE LIIT + VPP  +RPS+ MDG+ +   NE+D+T +L
Sbjct: 219 ILKRISEEDLRQMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+ N +++Q + E +    +    E LQ  VA Y+++D+ G P ++Q + RP+    
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIR 338

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LTYPE V+ +NI 
Sbjct: 339 ARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIG 398

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL Q ++NGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL DGD ++FN
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGT-RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFN 457

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R E   L 
Sbjct: 458 RQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELC 517

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
            V NN+ +P+    L+   QD L  ++ + R+DTF D+     M  ++   DG+    +P
Sbjct: 518 LVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGV----IP 573

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAILKP   WTGKQL S++I    ++            +S +    + + +I ++    
Sbjct: 574 QPAILKPRPRWTGKQLISMVIPKEISL------------HSPESSGGQDNADIPLK---- 617

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  +  ++ EL+ G L K  +G+    G+  +   + G       +N + ++   W+ N
Sbjct: 618 -DTGLLIQSGELLYGLLKKKNIGSA-AGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLN 675

Query: 565 HGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
           +G SIGI D  P K+  +K +  + ++  EV  +   +    +L+  PG +   T E  +
Sbjct: 676 NGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARL-TAQATANELEALPGMNVRATFENKV 734

Query: 624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
           +  LN  R+ AG     SL   N+ + M++ GSKGS INISQM A VGQQ V G+R P G
Sbjct: 735 SMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFG 794

Query: 684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
           F  R+LPHF +    P A+GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+TGY+ 
Sbjct: 795 FKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 854

Query: 744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           RRL+KALEDLS +YD +VRN+ G I+QFLYG+DG+D
Sbjct: 855 RRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLD 890



 Score =  177 bits (449), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 195/401 (48%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1068 NRWDRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKD 1127

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L  +   +  A+ ++  +E T L  +    +I     +    I  DM+ ++
Sbjct: 1128 IKTPSMAVYLNTHLGTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIVEDMDMVE 1187

Query: 1014 DAHLCINADIVKESIVQT--------PKIKLKQQHIKVLDF--RKLEIFPP--------- 1054
             ++  I  D    +  Q+         + KL  + IK+ D   R  E +P          
Sbjct: 1188 -SYFLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDN 1246

Query: 1055 -VDKSKIHFELYSLKN----------------------VLPMVIVKGIKTVERV------ 1085
              D+  I        N                      +L  + ++G+  VER       
Sbjct: 1247 NADEQVIRIRTIRTDNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGT 1306

Query: 1086 -VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
             ++ + +  +   K++ +  ++ L   G+ L+ V+  +G+D  +T +N ++++ +  GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDEKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+ +G  D   G+SE +++G   P+GTG   +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDV 1467


>gi|168053159|ref|XP_001779005.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669567|gb|EDQ56151.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1646

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 296/718 (41%), Positives = 427/718 (59%), Gaps = 36/718 (5%)

Query: 91  VLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL + KR++D DC +L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+D+T +L
Sbjct: 220 VLSILKRISDEDCAILGLNPKFARPDWMILQALPIPPPPVRPSVMMDSSARSEDDLTHQL 279

Query: 148 KRIIQTNASLQQELVEANSAFKSLAG--WETLQVEVAQYINSDVRGVPFSMQ-VARPLSG 204
             II+ N +L+++  E N A   +     + LQ  +A Y ++D+ G P + Q   RP+  
Sbjct: 280 AMIIRHNNNLKKQ--EQNGAPTHIINEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKS 337

Query: 205 FVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHN 264
              RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I E+ +P  +A  LTYPE V+ +N
Sbjct: 338 ICARLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYN 397

Query: 265 IEKLRQCIQNGPDKYPG---ARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
           +E+L++ ++ GP   PG   A+ I   DG  R+     +      L+ G  V+RH+ DGD
Sbjct: 398 MERLKELVEYGPHPPPGKTGAKYIIREDG-QRLDLRFLKRSSDRHLELGYKVERHMNDGD 456

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
            VLFNRQPSLH+MSIM HR RIMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E
Sbjct: 457 FVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAE 516

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
            L LM V   + +P++   ++   QD L     +T++DTF ++  F  +  +  +   ++
Sbjct: 517 VLELMMVPKCVVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFYNILMWWEEFAGKI 576

Query: 442 DLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET 501
             P P ILKP  LWTGKQ+F+++I         +NL  +   + +  +   GD       
Sbjct: 577 --PIPTILKPRPLWTGKQIFTLIIPKQ------INLMRQAFWHPDSEV---GD------- 618

Query: 502 MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARW 561
           + P D  V     E+++G L K TLG G +  L  V+  + G  A    +     L   W
Sbjct: 619 LSPGDTQVRIEKGEVVAGTLCKKTLGTG-QGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 677

Query: 562 IGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEA 621
           +   GFSIGI D        +K  + IS         IK   + +L+ +PG    ++ E 
Sbjct: 678 LLQQGFSIGIGDTIADAATMEKINETISIAKNDVKDLIKMAQDKQLEAQPGRTMKESFEN 737

Query: 622 VITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
            +  +LN+ R++AG +   SL   N+   M   GSKG+ INISQM ACVGQQ+V G+R P
Sbjct: 738 RVNGVLNKARDEAGASAQRSLSESNNLKAMVTAGSKGTFINISQMTACVGQQNVEGKRIP 797

Query: 682 NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
            GF+DR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++TGY
Sbjct: 798 YGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 857

Query: 742 MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 799
           + RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +       D L MK
Sbjct: 858 IQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ-----KLDSLKMK 910



 Score =  200 bits (508), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 130/407 (31%), Positives = 213/407 (52%), Gaps = 50/407 (12%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T +  +  I    +R+ +  V  G  IG + AQSIGEP TQMTL TFHFAGV++ N+T 
Sbjct: 1044 LTREAFDWVIGEIETRFLMSLVAPGEMIGCVAAQSIGEPATQMTLNTFHFAGVSAKNVTL 1103

Query: 941  GVPRIKEIINGAKRISTPIITAELE--CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR++EIIN AK+  TP +T  L+   N  +  A+ V+  +E T L  V ++ +I    
Sbjct: 1104 GVPRLREIINVAKKTKTPSLTVFLKPGINKEKEKAKNVQCALEYTTLRSVTQATEIWYDP 1163

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKS 1058
               S +I  D+E ++  +   + D+  E I  +P +   + + +++  +KL +    +K 
Sbjct: 1164 EPMSTLIEEDVEFVRSYYEMPDEDVAPEKI--SPWLLRIELNREMMVDKKLSMADIAEKI 1221

Query: 1059 KIHFE----------------------------------------LYSLK-NVLPMVIVK 1077
             + F+                                        L  ++ N+L  + ++
Sbjct: 1222 NLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEATEQSEDDVFLKKIESNMLTEMALR 1281

Query: 1078 GIKTVERVVIAEKEKEKRKVKEN---GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHI 1134
            GI  + +V I  KE +K +  EN     +K++ L  EG  + AVM  E +D  +T SNH+
Sbjct: 1282 GIPDIRKVFI--KEDKKNRFDENVAFEPEKEWILDTEGVNMLAVMCHEDVDASRTLSNHL 1339

Query: 1135 FEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKM 1194
             EV + LGIEA R  ++ E+ + +   G  ++ RH+ +L D+MT+RG ++ ITR GI + 
Sbjct: 1340 IEVIEVLGIEAVRNALLKELRDVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRN 1399

Query: 1195 DKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            D   +M  SFE+T D L +A+V    D ++GV+E I++G   P+GTG
Sbjct: 1400 DTGPMMRCSFEETVDILLDAAVYAEADHLKGVTENIMLGQLAPIGTG 1446


>gi|413915218|gb|AFW21471.1| RNA polymerase II largest subunit [Epichloe typhina]
          Length = 1746

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 294/696 (42%), Positives = 426/696 (61%), Gaps = 34/696 (4%)

Query: 94  LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS---NENDITERL 147
           + KR+++ D   + L+    RPE LIIT + VPP  +RPS+ MDG+ +   NE+D+T +L
Sbjct: 219 ILKRISEEDLRQMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+ N +++Q + E +    +    E LQ  VA Y+++D+ G P ++Q + RP+    
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIR 338

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LTYPE V+ +NI 
Sbjct: 339 ARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIG 398

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL Q ++NGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL DGD ++FN
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGT-RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFN 457

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R E   L 
Sbjct: 458 RQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELC 517

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
            V NN+ +P+    L+   QD L  ++ + R+DTF D+     M  ++   DG+    +P
Sbjct: 518 LVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGV----IP 573

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAILKP   WTGKQL S++I    ++            +S +    + + +I ++    
Sbjct: 574 QPAILKPRPRWTGKQLISMVIPKEISL------------HSPESSGGQDNADIPLK---- 617

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  +  ++ EL+ G L K  +G+    G+  +   + G       +N + ++   W+ N
Sbjct: 618 -DTGLLIQSGELLYGLLKKKNIGSA-AGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLN 675

Query: 565 HGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
           +G SIGI D  P K+  +K +  + ++  EV  +   +    +L+  PG +   T E  +
Sbjct: 676 NGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARL-TAQATANELEALPGMNVRATFENKV 734

Query: 624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
           +  LN  R+ AG     SL   N+ + M++ GSKGS INISQM A VGQQ V G+R P G
Sbjct: 735 SMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFG 794

Query: 684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
           F  R+LPHF +    P A+GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+TGY+ 
Sbjct: 795 FKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 854

Query: 744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           RRL+KALEDLS +YD +VRN+ G I+QFLYG+DG+D
Sbjct: 855 RRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLD 890



 Score =  177 bits (450), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 194/401 (48%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1068 NRWDRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKD 1127

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L  +   +  A+ ++  +E T L  +    +I     +    I  DM+ ++
Sbjct: 1128 IKTPSMAVYLNTHLGTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIVEDMDMVE 1187

Query: 1014 DAHLCINADIVKESIVQT--------PKIKLKQQHIKVLDF--RKLEIFPP--------- 1054
             ++  I  D    +  Q+         + KL  + IK+ D   R  E +P          
Sbjct: 1188 -SYFLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDN 1246

Query: 1055 -VDKSKIHFELYSLKN----------------------VLPMVIVKGIKTVERVVIAE-- 1089
              D+  I        N                      +L  + ++G+  VER  + +  
Sbjct: 1247 NADEQVIRIRTIRTDNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGT 1306

Query: 1090 ----KEKEKRKVKENGEK-KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
                 +      K++ EK  ++ L   G+ L+ V+  +G+D  +T +N ++++ +  GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDEKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+ +G  D   G+SE +++G   P+GTG   +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDV 1467


>gi|413915230|gb|AFW21477.1| RNA polymerase II largest subunit [Epichloe festucae]
          Length = 1756

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 294/696 (42%), Positives = 425/696 (61%), Gaps = 34/696 (4%)

Query: 94  LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS---NENDITERL 147
           + KR+++ D   + L+    RPE LIIT + VPP  +RPS+ MDG+ +   NE+D+T +L
Sbjct: 219 ILKRISEEDLRRMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFV 206
             II+ N +++Q + E +    +    E LQ  VA Y+++D+ G P ++Q   RP+    
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIR 338

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LTYPE V+ +NI 
Sbjct: 339 ARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIG 398

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL Q ++NGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL DGD ++FN
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGT-RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFN 457

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R E   L 
Sbjct: 458 RQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELC 517

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
            V NN+ +P+    L+   QD L  ++ + R+DTF D+     M  ++   DG+    +P
Sbjct: 518 LVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFIDKEMVMNMMLWVPNWDGV----IP 573

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAILKP   WTGKQL S++I    ++            +S +    + + +I ++    
Sbjct: 574 QPAILKPRPRWTGKQLISMVIPKEISL------------HSPESSGGQDNADIPLK---- 617

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  +  ++ EL+ G L K  +G+    G+  +   + G       +N + ++   W+ N
Sbjct: 618 -DTGLLIQSGELLYGLLKKKNIGSA-AGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLN 675

Query: 565 HGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
           +G SIGI D  P K+  +K +  + ++  EV  +   +    +L+  PG +   T E  +
Sbjct: 676 NGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARL-TAQATANELEALPGMNVRATFENKV 734

Query: 624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
           +  LN  R+ AG     SL   N+ + M++ GSKGS INISQM A VGQQ V G+R P G
Sbjct: 735 SMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFG 794

Query: 684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
           F  R+LPHF +    P A+GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+TGY+ 
Sbjct: 795 FKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 854

Query: 744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           RRL+KALEDLS +YD +VRN+ G I+QFLYG+DG+D
Sbjct: 855 RRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLD 890



 Score =  177 bits (450), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 195/401 (48%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1068 NRWDRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKD 1127

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L  +   +  A+ ++  +E T L  +    +I     +    I  DM+ ++
Sbjct: 1128 IKTPSMAVYLNTHLGTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIVEDMDMVE 1187

Query: 1014 DAHLCINADIVKESIVQT--------PKIKLKQQHIKVLDF--RKLEIFPP--------- 1054
             ++  I  D    +  Q+         + KL  + IK+ D   R  E +P          
Sbjct: 1188 -SYFLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDN 1246

Query: 1055 -VDKSKIHFELYSLKN----------------------VLPMVIVKGIKTVERV------ 1085
              D+  I        N                      +L  + ++G+  VER       
Sbjct: 1247 NADEQVIRIRTIRTDNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGT 1306

Query: 1086 -VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
             ++ + +  +   K++ +  ++ L   G+ L+ V+  +G+D  +T +N ++++ +  GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+ +G  D   G+SE +++G   P+GTG   +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDV 1467


>gi|413915228|gb|AFW21476.1| RNA polymerase II largest subunit [Epichloe festucae]
          Length = 1756

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 294/696 (42%), Positives = 425/696 (61%), Gaps = 34/696 (4%)

Query: 94  LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS---NENDITERL 147
           + KR+++ D   + L+    RPE LIIT + VPP  +RPS+ MDG+ +   NE+D+T +L
Sbjct: 219 ILKRISEEDLRQMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFV 206
             II+ N +++Q + E +    +    E LQ  VA Y+++D+ G P ++Q   RP+    
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIR 338

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LTYPE V+ +NI 
Sbjct: 339 ARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIG 398

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL Q ++NGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL DGD ++FN
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGT-RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFN 457

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R E   L 
Sbjct: 458 RQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELC 517

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
            V NN+ +P+    L+   QD L  ++ + R+DTF D+     M  ++   DG+    +P
Sbjct: 518 LVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFIDKEMVMNMMLWVPNWDGV----IP 573

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAILKP   WTGKQL S++I    ++            +S +    + + +I ++    
Sbjct: 574 QPAILKPRPRWTGKQLISMVIPKEISL------------HSPESSGGQDNADIPLK---- 617

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  +  ++ EL+ G L K  +G+    G+  +   + G       +N + ++   W+ N
Sbjct: 618 -DTGLLIQSGELLYGLLKKKNIGSA-AGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLN 675

Query: 565 HGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
           +G SIGI D  P K+  +K +  + ++  EV  +   +    +L+  PG +   T E  +
Sbjct: 676 NGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARL-TAQATANELEALPGMNVRATFENKV 734

Query: 624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
           +  LN  R+ AG     SL   N+ + M++ GSKGS INISQM A VGQQ V G+R P G
Sbjct: 735 SMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFG 794

Query: 684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
           F  R+LPHF +    P A+GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+TGY+ 
Sbjct: 795 FKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 854

Query: 744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           RRL+KALEDLS +YD +VRN+ G I+QFLYG+DG+D
Sbjct: 855 RRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLD 890



 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 195/401 (48%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1068 NRWDRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKD 1127

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L  +   +  A+ ++  +E T L  +    +I     +    I  DM+ ++
Sbjct: 1128 IKTPSMAVYLNTHLGTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIVEDMDMVE 1187

Query: 1014 DAHLCINADIVKESIVQT--------PKIKLKQQHIKVLDF--RKLEIFPP--------- 1054
             ++  I  D    +  Q+         + KL  + IK+ D   R  E +P          
Sbjct: 1188 -SYFLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDN 1246

Query: 1055 -VDKSKIHFELYSLKN----------------------VLPMVIVKGIKTVERV------ 1085
              D+  I        N                      +L  + ++G+  VER       
Sbjct: 1247 NADEQVIRIRTIRTDNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGT 1306

Query: 1086 -VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
             ++ + +  +   K++ +  ++ L   G+ L+ V+  +G+D  +T +N ++++ +  GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+ +G  D   G+SE +++G   P+GTG   +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDV 1467


>gi|45935329|gb|AAS79686.1| RNA polymerase II large subunit [Podocarpus macrophyllus]
          Length = 1013

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 298/713 (41%), Positives = 424/713 (59%), Gaps = 29/713 (4%)

Query: 91  VLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL + KR++D +C++L  +    RP+ +I+  + VPP  +RP+V+MD +  +E+D+T +L
Sbjct: 139 VLNVLKRISDEECQMLGFNPKYARPDWMILQVLPVPPPPVRPAVMMDTTSRSEDDLTHQL 198

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+ N +L+++      A       + LQ  +A Y ++++ G P + Q + RP+    
Sbjct: 199 AMIIRHNETLKKQEKTGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC 258

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I E+ +P  +A  LTYPE V+ +NIE
Sbjct: 259 SRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIE 318

Query: 267 KLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDV 322
           +L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RHL DGD 
Sbjct: 319 RLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL--GYKVERHLNDGDF 376

Query: 323 VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA 382
           VLFNRQPSLH+MSIM HR RIMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E 
Sbjct: 377 VLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 436

Query: 383 LLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVD 442
           L LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D   ++ 
Sbjct: 437 LELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKI- 495

Query: 443 LPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETM 502
            P+PAILKP  LWTGKQ+F+++I    N+  Y     + +T       T GD  + IE  
Sbjct: 496 -PSPAILKPRPLWTGKQVFNLIIPKQINLIRYSAWHAESETG----FLTAGDTVVHIE-- 548

Query: 503 CPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWI 562
                       E++SG L K TLG      L  V+  + G  A    ++    L   W+
Sbjct: 549 ----------KGEVLSGTLCKKTLGTST-GSLIHVIWEEVGPDAARKFLSHTQWLVNYWL 597

Query: 563 GNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAV 622
              GFS+GI D        +   + IS         IK   E +L+ +PG    ++ E  
Sbjct: 598 LQQGFSMGIGDTIADAATMEVINETISRAKNEVKQLIKAAQEKQLEAEPGRTMMESFENR 657

Query: 623 ITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPN 682
           +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R P 
Sbjct: 658 VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPY 717

Query: 683 GFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYM 742
           GF  R+LPHF +  K P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++TGY+
Sbjct: 718 GFDGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 777

Query: 743 SRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR 795
            RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L   R
Sbjct: 778 QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKR 830


>gi|346321728|gb|EGX91327.1| DNA-directed RNA polymerase II largest subunit [Cordyceps militaris
           CM01]
          Length = 1757

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 294/695 (42%), Positives = 416/695 (59%), Gaps = 37/695 (5%)

Query: 94  LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS---NENDITERL 147
           + +R+++ D   + L+    RPE +IIT + VPP  +RPS+ MDG+ +   NE+D+T +L
Sbjct: 221 ILRRISERDLHNMGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTGTRNEDDLTYKL 280

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFV 206
             II+ N +++Q + E +    +    E LQ  VA Y+++D+ G P ++Q   RP+    
Sbjct: 281 GDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIR 340

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LTYPE V+ +NI 
Sbjct: 341 ARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIA 400

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL Q ++NGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL DGD ++FN
Sbjct: 401 KLHQLVENGPNEHPGAKYVIRSDGT-RIDLRHHRRAAQISLEYGWKVERHLIDGDYIIFN 459

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+ S+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQTEE R E   L 
Sbjct: 460 RQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELC 519

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
            V NN+ +P+    L+   QD L   + + R+DTF D+     +  ++   DG+    +P
Sbjct: 520 LVPNNIVSPQKNGPLMGIVQDSLAGCYKLCRRDTFIDKELVQNIMLWVPNWDGV----IP 575

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAILKP   WTGKQ+ S++I         ++L  KE    N                  
Sbjct: 576 QPAILKPRPRWTGKQIISMVIP------AEISLYSKEDKLDNP----------------K 613

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
           +D  +  ++ +LI G L K  +G     G+  +   + G       +N + ++   W+ N
Sbjct: 614 HDAGMLIQSGQLIYGLLKKKYVGAA-AGGIIHLCYNELGPDGAMAFLNGVQQVVTYWLLN 672

Query: 565 HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
            G SIGI D  P KE  DK    I E+         +    +L+  PG +   T E+ ++
Sbjct: 673 TGHSIGIGDTIPDKETIDKIQAHIDEHKAEVARLTAQATANELEALPGMNVRATFESKVS 732

Query: 625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
             LN  R+ AG +   SL   N+ + MS+ GSKGS INISQM A VGQQ V G+R P GF
Sbjct: 733 LALNMARDQAGTSTQKSLKDSNNAVTMSESGSKGSSINISQMTALVGQQIVEGKRIPFGF 792

Query: 685 IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
             R+LPHF +    P A+GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+TGY+ R
Sbjct: 793 KYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQR 852

Query: 745 RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           RL+KALEDLS +YD +VRN+ G ++QFLYG+DG+D
Sbjct: 853 RLVKALEDLSARYDGTVRNSLGDVIQFLYGEDGLD 887



 Score =  177 bits (448), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 194/400 (48%), Gaps = 49/400 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1065 NRWDRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKN 1124

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDME--- 1010
            I TP +   L+     +  A+ ++  +E T L  V    +I     + +  I  D++   
Sbjct: 1125 IKTPSMAVYLDTKLGTQEQAKKLRSLVEYTNLRSVTSVTEIYYDPDVQATNITEDVDMVE 1184

Query: 1011 -----------------------------------TIQDAHLCINADIVKESIVQTPKIK 1035
                                               TI D   CI  +   +  +      
Sbjct: 1185 SYFMIPDDGQDTIHRQSRWLLRITLDRQKLLDKEITIDDVAACIKEEYATDLAIIFSDNN 1244

Query: 1036 LKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK---NVLPMVIVKGIKTVERV------- 1085
              +Q I++   R+ +       +KI  ++   +   ++L  + ++G+  VER        
Sbjct: 1245 ADEQVIRIRTIRRDDGKDEDPDTKIEDDVMLKRLEAHLLDTMTLRGVPGVERAFLSKGTR 1304

Query: 1086 VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
            +I +++  +  + +N +  ++ L   G+ L+ V+   G+D  +T SN ++++ +  G+EA
Sbjct: 1305 LIEDEDGSELALIDNPKCTQWFLDTSGSALREVLAVPGVDPRRTYSNDLYQITEVFGVEA 1364

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
             R  +I E++  +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SFE
Sbjct: 1365 VRSALIKELSNVLSFDGSYVNHRHIALLCDIMTYRGVISAVTRHGINRADTGALMRCSFE 1424

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            +T + L  A+ +G  D   G+SE +++G   P+GTG   +
Sbjct: 1425 ETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDV 1464


>gi|388580196|gb|EIM20513.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Wallemia sebi CBS 633.66]
          Length = 1752

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 305/737 (41%), Positives = 435/737 (59%), Gaps = 40/737 (5%)

Query: 71  HTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAI 127
           H +E           L+   V  LFK++ D+D  ++ LS    RP+ +IIT + VPP  +
Sbjct: 197 HDEEDDTKAQQDKRQLSAAEVYTLFKKIPDSDITLMGLSAEFARPDWMIITVLPVPPPPV 256

Query: 128 RPSVIMDGSQS-NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYIN 186
           RPS+ +DG  + +E+D+T +L  I++  A+L++   E   A       + +Q  VA Y++
Sbjct: 257 RPSIAVDGGATRSEDDLTYKLADILKYTATLRRFESEGAPAHIISENEQLVQFHVATYMD 316

Query: 187 SDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVA 245
           +D+ G+P +MQ   RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ EV 
Sbjct: 317 NDIAGIPQAMQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVG 376

Query: 246 IPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAV 305
           +P  +AR LTYPERV+ +NI  L++ ++NGP++YPGAR +    G    L  ++  +   
Sbjct: 377 VPFSIARTLTYPERVTPYNILYLQELVRNGPNEYPGARYVVRDTGERIDL--RYNRRADT 434

Query: 306 ELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDG 365
            L+ G IV+RHL+DGD VLFNRQPSLH+MS+MCHR ++MP+ T R N SV  PYNADFDG
Sbjct: 435 FLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMCHRVKLMPYSTFRLNLSVTPPYNADFDG 494

Query: 366 DEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYD-- 423
           DEMN+HVPQ+EE R E   +  V   + +P+    ++   QD L     +T +DTF D  
Sbjct: 495 DEMNLHVPQSEETRAEMSQIASVTRQIVSPQANSPVMGIVQDALCGVRKLTLRDTFLDSK 554

Query: 424 RAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKT 483
           + A  LM     DG+    +PTPAI+KP  LWTGKQ+ S+ I P       +N+    + 
Sbjct: 555 QVANILMWVPGWDGI----VPTPAIMKPKPLWTGKQILSLCI-PRG-----INVFRSNEQ 604

Query: 484 YSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYG 543
            S+  +   G        +C  DG + +       G + K+T+G  ++ GL  V+ R+ G
Sbjct: 605 KSSAPVDDAG--------VCIEDGNIMY-------GAIDKSTVGK-SQGGLVHVIFREKG 648

Query: 544 AHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYN 603
                  ++ L  +   W+ +HGFSIGI D    K       + I +  +     I+   
Sbjct: 649 HIICKDFLSGLQVVVNYWMLHHGFSIGIGDTIADKSTMAYITERIGDAKDKVKGIIQSAE 708

Query: 604 EGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINI 663
             +L+ + G    ++ EA +   LN+ R+  GK+   SL   N+   M   GSKGS INI
Sbjct: 709 SNQLEAQAGMTIRESFEASVNMELNQARDQVGKSAQHSLKDDNNVKQMVVAGSKGSFINI 768

Query: 664 SQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTM 723
           SQM ACVGQQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ +EFFFH M
Sbjct: 769 SQMSACVGQQSVEGKRIPFGFKYRTLPHFTKDDFGPESRGFVENSYLRGLTPSEFFFHAM 828

Query: 724 GGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANM 783
            GREGL+DTAVKTA+TGY+ RRL+KALED+ + YD +VRN+ G I+QF YG+DGMD + M
Sbjct: 829 AGREGLIDTAVKTAETGYVQRRLVKALEDIMVHYDGTVRNSLGDILQFAYGEDGMDGSAM 888

Query: 784 E-----GKSGEPLNFDR 795
           E     G S     FDR
Sbjct: 889 EKQHFIGMSASDEEFDR 905



 Score =  192 bits (489), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 131/398 (32%), Positives = 208/398 (52%), Gaps = 51/398 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G   G + AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEIIN A  
Sbjct: 1062 TRFNQSIVAPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATN 1121

Query: 955  ISTPIITAELECNDNEN--AARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T  L+   + +  A + V+  +E T L  +  + +I+      + ++  D + +
Sbjct: 1122 IKTPSLTVYLDEETSRDIVAVKNVQAELEHTTLKTITAATEIIYDPDPTTTIVDEDRDFV 1181

Query: 1013 QDAHLCINADIVKESI-VQTPKI-KLKQQHIKVLDFRKLEIFPPVDKSKIHFE-----LY 1065
            + A+  I  + V  +I  Q+P + +L+    K+LD ++LE+     K    F+     +Y
Sbjct: 1182 E-AYFAIPDEEVAANINKQSPWLLRLELDRAKMLD-KRLEMNFVAGKIASLFQNDLFVIY 1239

Query: 1066 S-------------------------------LK----NVLPMVIVKGIKTVERVVIAEK 1090
            S                               LK    N+L  + ++GI+ + RV I E+
Sbjct: 1240 SEDSAEKLIIRARIVGDDPTTKEDDGVSEDVFLKKIENNMLSNISLRGIEGITRVFIVER 1299

Query: 1091 EKEKRKVKENGE---KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAAR 1147
            +KE   + E G    ++++ L  +G  L  V+  + +DG +T SNH  E+ + LGIEAAR
Sbjct: 1300 KKEV--IAEGGRFERQQEWVLETDGVNLSEVLPVKHVDGTRTYSNHCQEIFEVLGIEAAR 1357

Query: 1148 ICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKT 1207
              I+ E+   ++  G  ++ RH+ LL DLMT RG ++ ITR GI + D   LM  SFE+T
Sbjct: 1358 NAILKELRNVIEFDGSYVNYRHLALLCDLMTNRGRLMAITRHGINRADTGALMRCSFEET 1417

Query: 1208 ADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             + L  A+  G  D   G++E +++G   P+GTG   +
Sbjct: 1418 VEILLEAAAIGEKDDCHGIAENVLLGQMAPMGTGAFDV 1455


>gi|120561205|gb|ABM26988.1| RNA polymerase II largest subunit, partial [Neolecta vitellina]
          Length = 997

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 295/715 (41%), Positives = 430/715 (60%), Gaps = 45/715 (6%)

Query: 91  VLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL +F+ ++D D + L LS    RPE +IIT + VPP  +RPS+ +DGS  +E+D+T +L
Sbjct: 127 VLRIFQLISDEDLQKLGLSGEYARPEWMIITVLGVPPPPVRPSISVDGSARSEDDLTYKL 186

Query: 148 KRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
             II+ N+++++   E   A     F+SL     LQ  VA Y+++++ G P ++Q + RP
Sbjct: 187 AEIIKANSNVRRTESEGAPAHIVTEFESL-----LQFHVATYMDNNIPGQPQAIQKSGRP 241

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +A+ LTYPE V+
Sbjct: 242 VKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVT 301

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
            +NI KL++ ++NGP+++PGA+ I   D   R+     +    + L+ G  V+RH+ DGD
Sbjct: 302 SYNIHKLQELVRNGPNEHPGAKYI-IRDTGERIDLRYHKRAGEIPLQYGWRVERHIVDGD 360

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           V++FNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R E
Sbjct: 361 VIIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAE 420

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DRAAFSLMCCYMGDGMD 439
              +  V   + +P+  + ++   QD L +    T++D+F   D     LM     DG  
Sbjct: 421 ISEICMVPRQIVSPQGNKPVMGIVQDTLCAIRKFTKRDSFLAQDMVMNILMWVPEWDGT- 479

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
              +P PAI+KP  LW+GKQ+ S++I P       +N+T  ++  ++             
Sbjct: 480 ---VPMPAIIKPKPLWSGKQILSMVI-PRG-----INITRNDEDQTHN------------ 518

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
               P+D  +   N E+I G + K T+G+    GL  +++++ G     G  N +  +  
Sbjct: 519 ---PPDDRGMKIENGEIIYGVVDKKTVGS-TPGGLIHIIMQEKGPEVCKGFFNGVQLVVN 574

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISE-NYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
            W  ++GFSIGI D      + D   + I+E   +V  V  K  N   L+  PG    +T
Sbjct: 575 YWFLHNGFSIGIGDTIADAHIMDIIQEKITEARAKVIEVTRKAQN-NTLEPSPGMTLRET 633

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            E+ +   LN  R++AG++    L   N+   M   GSKGS INISQM ACVGQQ+V G+
Sbjct: 634 FESQVRQALNNARDEAGRSAEKGLKESNNVKQMVSAGSKGSFINISQMSACVGQQAVEGQ 693

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R   GF  R+LPHF R    P ++GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+
Sbjct: 694 RIAFGFKFRTLPHFVRDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 753

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
           TGY+ RRL+KALED+ ++YD +VRN+ G IVQ  YG+DG+D A +E +  E L  
Sbjct: 754 TGYIQRRLVKALEDVMVKYDGTVRNSLGDIVQLAYGEDGLDGAKVEHQFLETLTL 808


>gi|308808522|ref|XP_003081571.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
 gi|116060036|emb|CAL56095.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
          Length = 1673

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 297/705 (42%), Positives = 427/705 (60%), Gaps = 34/705 (4%)

Query: 92  LFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLK 148
           L + K ++D DC VL L     RP+ +I+  + VPP  +RPSV  D S  +E+D+T +L 
Sbjct: 215 LQILKGISDEDCRVLGLDPEHARPDWMILQVMPVPPPPVRPSVSFDASTRSEDDLTVKLM 274

Query: 149 RIIQTNASLQQELVEANSAFKS--LAGWETLQVEVAQYINSDVRGVPFSM-QVARPLSGF 205
            I++TN +L+++  E N A +   L   E LQ  +  ++++ V G+P ++ +  R +   
Sbjct: 275 EIVRTNKNLERQ--EQNGAPQHVILEFTELLQYHIMTFMDNTVAGMPRALTRSGRSIKSI 332

Query: 206 VQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNI 265
            +RLKGK GR RGNL GKRV+++ RTVI+PDPNL + E+ +P  +A  +TYPE V+ +NI
Sbjct: 333 SERLKGKAGRIRGNLMGKRVDFSARTVITPDPNLMLDELGVPWSIALNMTYPETVTPYNI 392

Query: 266 EKLRQCIQNGPDKYPG---ARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDV 322
           E+L++ + NGP   PG   AR I   DG  R+     +      L+ G  V+RH+ +GDV
Sbjct: 393 ERLQRLVDNGPHPPPGETGARYIIREDG-QRLDLRFLKKASEKRLEYGYKVERHMVNGDV 451

Query: 323 VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA 382
           VLFNRQPSLH+MSIM HR RIMP+ T R N SV  PYNADFDGDEMNMH+PQ+ E + E 
Sbjct: 452 VLFNRQPSLHKMSIMGHRVRIMPYSTFRLNLSVTPPYNADFDGDEMNMHLPQSYETKAEV 511

Query: 383 LLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVD 442
             LM V   + +P+  + ++A  QD L    LIT++DTF  +  F  +  ++ D   ++ 
Sbjct: 512 KELMMVPKMIVSPQANKPVMAIVQDTLLGCRLITKRDTFIPKDVFMNIIMWLEDWDGKI- 570

Query: 443 LPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG-DEEIRIET 501
            P PAILKP  LWTGKQ+FS+++ P  N                 L+RT     +    T
Sbjct: 571 -PKPAILKPQPLWTGKQVFSMML-PKVN-----------------LLRTSAWARDADDVT 611

Query: 502 MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARW 561
              +D  V     EL++G L K T+G+G   GL  V   ++G  A  G +++   L   W
Sbjct: 612 FSVDDTGVRIEQGELLTGTLCKKTMGSGGG-GLIHVTWEEWGPIAARGLISQTQTLVNYW 670

Query: 562 IGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEA 621
           + +HGF++GI D     E        I++        IK+    +L+L+PG    Q+ E 
Sbjct: 671 LLHHGFTVGIADTIADDETMFTINNTITKAKADVKEVIKQAQNNELELQPGMTMQQSFEQ 730

Query: 622 VITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
            +  ILN+ R++AG +   SL   N+  +M   GSKGS +NISQM+ACVGQQ+V G+R P
Sbjct: 731 KVNQILNKARDNAGNSAQNSLKDTNNVKMMVTAGSKGSFLNISQMIACVGQQNVEGKRIP 790

Query: 682 NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
            GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++TGY
Sbjct: 791 YGFKGRTLPHFSKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 850

Query: 742 MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           + RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +
Sbjct: 851 IQRRLVKAMEDVVVKYDGTVRNSVGDVIQFLYGEDGMDATMIESQ 895



 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 147/478 (30%), Positives = 231/478 (48%), Gaps = 67/478 (14%)

Query: 815  QQVSEIVEKQLAAYGKESCS-EAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEE 873
            + V+E++ K +   G +  S EA  N    FF   +  L  K             ++L++
Sbjct: 1004 ESVAELLPKLIVVAGTDPLSIEAQRNGTLLFFAHVRANLAAK-------------RVLKD 1050

Query: 874  VTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGV 933
              HK   +T    +  I    SR+++     G  IG + AQSIGEP TQMTL TFHFAGV
Sbjct: 1051 --HK---LTRAGFDWVIGEVESRFKMALAPPGDGIGVVAAQSIGEPATQMTLNTFHFAGV 1105

Query: 934  ASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKS 991
            ++ N+T GVPR+KEIIN AK+I TP +T  L  E   +   A+ V+  +E T L  VA  
Sbjct: 1106 SAKNVTLGVPRLKEIINIAKQIKTPSLTVALKPEFASDRTKAKDVQASLEYTTLHSVAAV 1165

Query: 992  IKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTP---KIKLKQQHI---KVL- 1044
             ++         VI  D E ++  +   + D+    +  +P   +I+L ++ +   K+L 
Sbjct: 1166 TEVHYDPDPTDTVIEEDREFVRAYYEMPDEDVDPSRM--SPWLLRIELNREMMVDKKLLM 1223

Query: 1045 ---------DF-----------------RKLEIFPP----VDKSKIHFELYSLKNV---- 1070
                     DF                  ++ I        D S I  E++ LK +    
Sbjct: 1224 ADVAERINEDFGGDLSCIFNDDNSEKLVLRIRIMKAEGEKYDDSSIEDEVF-LKRIETQM 1282

Query: 1071 LPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKK--KYRLLVEGTGLQAVMGAEGIDGCK 1128
            L  + ++GI  +++V I E +      +    +K  ++ L  EG  L  VM    +D  +
Sbjct: 1283 LSNLALRGIPDIKKVFIREAKSNAVNPRTQLFEKHTEWMLDTEGVNLLEVMAHPDVDFTR 1342

Query: 1129 TKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITR 1188
            T SNH+ EV Q LGIEA R  ++ E+   ++  G  ++ RH+ +L ++MT+RG ++ ITR
Sbjct: 1343 TTSNHLIEVIQILGIEAVRNTLLRELRGVIEFDGSYVNYRHLAILVEVMTYRGHLVSITR 1402

Query: 1189 FGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIR 1246
             GI + +   LM  SFE+T D L  A+     D + G SE I++G   P+GTG  K+ 
Sbjct: 1403 HGINRAETGALMRCSFEETVDILMEAAAFSERDNMTGPSENIMLGQFCPIGTGEFKLH 1460


>gi|413915240|gb|AFW21482.1| RNA polymerase II largest subunit [Balansia obtecta]
          Length = 1760

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 293/696 (42%), Positives = 427/696 (61%), Gaps = 34/696 (4%)

Query: 94  LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS---NENDITERL 147
           + +R+++ D + + L+    RPE +IIT + VPP  +RPS+ MDG+ +   NE+D+T +L
Sbjct: 219 ILRRISEEDLQHMGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+ N +++Q + E +    +    E LQ  VA Y+++D+ G P ++Q + RP+    
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIR 338

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LTYPE V+ +NI 
Sbjct: 339 ARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIG 398

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           +L Q ++NGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL DGD ++FN
Sbjct: 399 RLHQLVENGPNEHPGAKYVLRADGT-RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFN 457

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQTEE R E   L 
Sbjct: 458 RQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVRELC 517

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
            V NN+ +P+    L+   QD L  ++ I R+DTF D+     M  ++   DG+    +P
Sbjct: 518 LVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFIDKEMVMNMMLWVPNWDGV----IP 573

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAILKP   WTGKQL S++I    ++            +S +    + + +I ++    
Sbjct: 574 QPAILKPRPRWTGKQLISMVIPKEISL------------HSPESSGGQDNADIPLK---- 617

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  +  ++ EL+ G L K  +G+    G+  +   + G       +N + ++   W+ N
Sbjct: 618 -DTGLLIQSGELLYGLLKKKNIGSA-AGGIVHLSYNELGPDGAMAFLNGVQQVVTYWLLN 675

Query: 565 HGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
           +G SIGI D  P K+  +K +  + ++  EV  +   +    +L+  PG +   T E  +
Sbjct: 676 NGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARL-TAQATANELEALPGMNVRATFENKV 734

Query: 624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
           +  LN  R+ AG     SL   N+ + M++ GSKGS INISQM A VGQQ V G+R P G
Sbjct: 735 SMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFG 794

Query: 684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
           F  R+LPHF +    P A+GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+TGY+ 
Sbjct: 795 FKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 854

Query: 744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           RRL+KALEDLS +YD +VRN+ G I+QFLYG+DG+D
Sbjct: 855 RRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLD 890



 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 122/403 (30%), Positives = 197/403 (48%), Gaps = 55/403 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1068 NRWDRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKD 1127

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L  +   +  A+ ++  +E T L  +    +I     +    IA DM+ ++
Sbjct: 1128 IKTPSMAVYLNTHLGTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTNIAEDMDMVE 1187

Query: 1014 DAHLCINADIVKESIVQTPKI---------KLKQQHIKVLDF--RKLEIFPP-------- 1054
               L    D  +++I Q  +          KL  + IK+ D   R  E +P         
Sbjct: 1188 SYFLI--PDDSQDTIDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPNDLAVIFSD 1245

Query: 1055 --VDKSKIHFELYSLKN----------------------VLPMVIVKGIKTVER------ 1084
               D+  I       ++                      +L  + ++G+  VER      
Sbjct: 1246 NNADEQVIRIRTIRTEDEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKG 1305

Query: 1085 --VVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLG 1142
              +VI +   E  K K++ +  ++ L   G+ L+ V+  EG+D  +T +N ++++ +  G
Sbjct: 1306 TRLVIDDDGSEIAK-KDSDKCTQWYLDTSGSALRDVLAVEGVDPTRTYTNDLWQIVEVFG 1364

Query: 1143 IEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLA 1202
            IEAAR  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  
Sbjct: 1365 IEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRC 1424

Query: 1203 SFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            SFE+T + L  A+  G  D   G+SE +++G   P+GTG   +
Sbjct: 1425 SFEETVEILLEAAATGELDDCRGISENVMLGQLAPMGTGNFDV 1467


>gi|413915248|gb|AFW21486.1| RNA polymerase II largest subunit [Neotyphodium aotearoae]
          Length = 1737

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 294/696 (42%), Positives = 424/696 (60%), Gaps = 34/696 (4%)

Query: 94  LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS---NENDITERL 147
           + KR+++ D   + L+    RPE LIIT + VPP  +RPS+ MDG+ +   NE+D+T +L
Sbjct: 219 ILKRISEEDLRQMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFV 206
             II+ N +++Q + E +    +    E LQ  VA Y+++D+ G P ++Q   RP+    
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIR 338

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LTYPE V+ +NI 
Sbjct: 339 ARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIG 398

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL Q ++NGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL DGD ++FN
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGT-RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFN 457

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R E   L 
Sbjct: 458 RQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELC 517

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
            V NN+ +P+    L+   QD L  ++ + R+DTF D+     M  ++   DG+    +P
Sbjct: 518 LVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGV----IP 573

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAILKP   WTGKQL S++I    ++            +S +      + +I ++    
Sbjct: 574 QPAILKPRPRWTGKQLISMVIPKEISL------------HSPESSGGHDNADIPLK---- 617

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  +  ++ EL+ G L K  +G+    G+  +   + G       +N + ++   W+ N
Sbjct: 618 -DTGLLIQSGELLYGLLKKKNIGSA-AGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLN 675

Query: 565 HGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
           +G SIGI D  P K+  +K +  + ++  EV  +   +    +L+  PG +   T E  +
Sbjct: 676 NGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARL-TAQATANELEALPGMNVRATFENKV 734

Query: 624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
           +  LN  R+ AG     SL   N+ + M++ GSKGS INISQM A VGQQ V G+R P G
Sbjct: 735 SMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFG 794

Query: 684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
           F  R+LPHF +    P A+GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+TGY+ 
Sbjct: 795 FKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 854

Query: 744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           RRL+KALEDLS +YD +VRN+ G I+QFLYG+DG+D
Sbjct: 855 RRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLD 890



 Score =  177 bits (450), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 195/401 (48%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1068 NRWDRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKD 1127

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L  +   +  A+ ++  +E T L  +    +I     +    I  DM+ ++
Sbjct: 1128 IKTPSMAVYLNTHLGTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIVEDMDMVE 1187

Query: 1014 DAHLCINADIVKESIVQT--------PKIKLKQQHIKVLDF--RKLEIFPP--------- 1054
             ++  I  D    +  Q+         + KL  + IK+ D   R  E +P          
Sbjct: 1188 -SYFLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDN 1246

Query: 1055 -VDKSKIHFELYSLKN----------------------VLPMVIVKGIKTVERV------ 1085
              D+  I        N                      +L  + ++G+  VER       
Sbjct: 1247 NADEQVIRIRTIRTDNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGT 1306

Query: 1086 -VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
             ++ + +  +   K++ +  ++ L   G+ L+ V+  +G+D  +T +N ++++ +  GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+ +G  D   G+SE +++G   P+GTG   +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDV 1467


>gi|83320434|gb|ABC02844.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
          Length = 1015

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 293/706 (41%), Positives = 425/706 (60%), Gaps = 24/706 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  V  + KR+TD D E + LS    RP+ +IIT + VPP  +RPS+ MDGS   E+D
Sbjct: 137 LTPSQVHQILKRITDEDLEDMGLSAEFARPDWMIITVLPVPPPPVRPSIQMDGSSRGEDD 196

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  I++ N ++++   E           + LQ  VA Y+++D+ G P ++Q + RP
Sbjct: 197 LTHKLADILKANVNVKRCETEGAPVHVIDEFEQLLQFHVATYMDNDIAGQPQALQKSGRP 256

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL I EV +P  +AR LT+PE V+
Sbjct: 257 LKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTFPEMVT 316

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
            +NIE++++ ++NGP+++PGA+ +   D   R+     +    + L+ G  V+RHL +GD
Sbjct: 317 PYNIERMQELVRNGPNEHPGAKYV-IRDTGERIDLRYHKRAGDIPLQYGYKVERHLNNGD 375

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           VV+FNRQPSLH+MS+M H+ R+MP+ T R N SV +PYNADFDGDEMNMHVPQ+EE + E
Sbjct: 376 VVIFNRQPSLHKMSMMGHKVRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETKAE 435

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
              +  V   + +P++ + ++   QD L      T++D F D+A    +  ++ D  D V
Sbjct: 436 IKEICMVPKQIISPQSNKPVMGIVQDTLCGIRKFTKRDCFVDKALVMNILMWVAD-WDGV 494

Query: 442 DLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET 501
            +PTPAILKP  LWTGKQL ++++  + N   Y +                 D+E     
Sbjct: 495 -IPTPAILKPQPLWTGKQLVTMIVPKNINCITYHS--------------AHPDDEK--SD 537

Query: 502 MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARW 561
           + P D  V   N EL+SG + K T+G  N  G   V + ++G        +    +   W
Sbjct: 538 ISPGDTKVVVENGELLSGIVCKKTVGASN-GGWVHVAMNEHGPEVAKKFFSGAQAVVNYW 596

Query: 562 IGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEA 621
           +  HGFSIGI D     + ++   + I+   +  +  I    +  L+  PG    +T E 
Sbjct: 597 LLQHGFSIGIGDTIADGQTTEHITETINSAKQRVSEIILSAQQDTLECAPGMTIRETFEN 656

Query: 622 VITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
            +   LNR R+ +G++   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R P
Sbjct: 657 KVNRELNRARDHSGRSAEKSLKEENNVKQMVVSGSKGSFINISQMSACVGQQNVEGKRIP 716

Query: 682 NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
            GF  R+LPHF +    P ++GFV NS+  GL+  EF+FH MGGREGL+DTAVKTA+TGY
Sbjct: 717 FGFKFRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGY 776

Query: 742 MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           + RRL+KALED+ ++YD +VRN+ G I+QF YG+DGMD   +E ++
Sbjct: 777 IQRRLVKALEDVMVKYDGTVRNSLGNIIQFCYGEDGMDGCFVEKQT 822


>gi|397135930|gb|AFO11460.1| RNA polymerase I, partial [Zygoascus hellenicus]
          Length = 871

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 293/714 (41%), Positives = 430/714 (60%), Gaps = 43/714 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P+ +L +FK +T  D + L L+E   RPE +IIT + VPP  +RPS+ ++ +   E+
Sbjct: 14  VLTPLEILNVFKHITAEDAQKLGLNEDYARPEWMIITVLPVPPPPVRPSIAINETARGED 73

Query: 142 DITERLKRIIQTNASLQ---QELVEAN--SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  I++ NA++Q   QE   A+  + F+SL     LQ  VA Y+++D+ G P ++
Sbjct: 74  DLTYKLADILKANANVQRCEQEGAPAHVINEFESL-----LQYHVATYMDNDIAGQPQAL 128

Query: 197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + +V +P  +AR L+
Sbjct: 129 QKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPKSIARTLS 188

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
           YPE V+ +NI+KL + ++NGP+++PGA+ +   D   R+     +    + L+ G  V+R
Sbjct: 189 YPEIVTPYNIQKLTEYVRNGPNEHPGAKYV-IRDTGERIDLRYHKRAGDIALQYGWKVER 247

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           HL D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+
Sbjct: 248 HLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 307

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCY 433
           +E R E   +  V   + +P++ + ++   QD L     ++ +DTF  +D+    L    
Sbjct: 308 QETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKLSLRDTFLDFDQVMNILFWVP 367

Query: 434 MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
             DG+    +PTPA+LKP  +WTGKQ+ S+ I     M+ +                 EG
Sbjct: 368 NWDGV----VPTPAVLKPRPMWTGKQMVSLAIPSGIFMQRF----------------DEG 407

Query: 494 DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
           +         P D  +     E++ G + K T+G     GL   ++R+ G +  +G    
Sbjct: 408 NP-----ANSPKDNGMLVYKGEIMYGVVDKKTVG-ATAGGLIHTIMREKGPYVAAGFFGN 461

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
           + K+   W+ +HGFS+GI D              ISE  +  +  I E  E KL  +PG 
Sbjct: 462 IQKIVNFWLLHHGFSVGIGDTIADSATMTGIAATISEAKQKVSEYIMEAQENKLAPEPGM 521

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              ++ E  ++ +LN+ R+ AG++   SL   N+   M   GSKGS INISQM ACVGQQ
Sbjct: 522 TLRESFEHNVSRVLNQARDTAGRSAETSLKDSNNVKQMVTSGSKGSFINISQMSACVGQQ 581

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
            V G+R P GF DRSLPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DTA
Sbjct: 582 IVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTA 641

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           VKTA+TGY+ RRL+KALED+ +QYD + RN+ G I+QF+YG+DG+D   +E ++
Sbjct: 642 VKTAETGYIQRRLVKALEDVMVQYDGTTRNSLGNIIQFVYGEDGLDATQVEKQT 695


>gi|33326207|gb|AAQ08513.1| RNA polymerase II largest subunit [Pinus nigra]
          Length = 1013

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 302/725 (41%), Positives = 426/725 (58%), Gaps = 36/725 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR+TD +C++L L+    RP+ +I+  + VPP  +RPSV+MD +  +E+D
Sbjct: 134 LSAERVLNVLKRITDEECQMLGLNPKYARPDWMILQVLPVPPPPVRPSVMMDTTSRSEDD 193

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++      A       + LQ  +A Y ++++ G P + Q + RP
Sbjct: 194 LTHQLAMIIRHNENLKKQEKNGAPAHIITEFAQLLQFHIATYFDNELPGQPRATQRSGRP 253

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I ++ +P  +A  LTYPE V+
Sbjct: 254 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVT 313

Query: 262 DHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHL 317
            +N+E+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RHL
Sbjct: 314 PYNMERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL--GYKVERHL 371

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E
Sbjct: 372 NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 431

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
            R E L LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D 
Sbjct: 432 TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 491

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG-DEE 496
             ++  P P I KP  +WTGKQ+F+++I    N                 LIRT     E
Sbjct: 492 DGKI--PAPTIYKPRPIWTGKQVFNLIIPKQIN-----------------LIRTSAWHSE 532

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
                + P D  V     E+ISG L K TLG  +   L  V+  + G  A    +     
Sbjct: 533 SESGVITPGDTLVRIEKGEVISGTLCKKTLGTSS-GSLIHVIWEEVGPDAARKFLGHTQW 591

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           L   W+   GFSIGI D        +   + IS+      + IK   E +L+ +PG    
Sbjct: 592 LVNYWLLQQGFSIGIGDTIADAATMEVINETISKAKNEVKMLIKAAQEKQLEAEPGRTMM 651

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           ++ E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V 
Sbjct: 652 ESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 711

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF  R+LPHF +  K P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT
Sbjct: 712 GKRIPYGFDGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 771

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           ++TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +       D L
Sbjct: 772 SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK-----LDSL 826

Query: 797 LMKVK 801
            MK K
Sbjct: 827 KMKKK 831


>gi|413915222|gb|AFW21473.1| RNA polymerase II largest subunit [Epichloe glyceriae]
          Length = 1761

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 293/696 (42%), Positives = 426/696 (61%), Gaps = 34/696 (4%)

Query: 94  LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS---NENDITERL 147
           + KR+++ D   + L+    RPE LIIT + VPP  +RPS+ MDG+ +   NE+D+T +L
Sbjct: 219 ILKRISEEDLRQMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+ N +++Q + E +    +    E LQ  VA Y+++D+ G P ++Q + RP+    
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIR 338

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ D N+ + EV +P  +AR LTYPE V+ +NI 
Sbjct: 339 ARLKGKEGRLRGNLMGKRVDFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPYNIG 398

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL Q ++NGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL DGD ++FN
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGT-RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFN 457

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R E   L 
Sbjct: 458 RQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELC 517

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
            V NN+ +P+    L+   QD L  ++ + R+DTF D+     M  ++   DG+    +P
Sbjct: 518 LVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGV----IP 573

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAILKP   WTGKQL S++I    ++            +S +    + + +I ++    
Sbjct: 574 QPAILKPRPRWTGKQLISMVIPKEISL------------HSPESSGGQDNADIPLK---- 617

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  +  ++ EL+ G L K  +G+    G+  +   + G       +N + ++   W+ N
Sbjct: 618 -DTGLLIQSGELLYGLLKKKNIGSA-AGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLN 675

Query: 565 HGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
           +G SIGI D  P K+  +K +  + ++  EV  +   +    +L+  PG +   T E  +
Sbjct: 676 NGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARL-TAQATANELEALPGMNVRATFENKV 734

Query: 624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
           +  LN  R+ AG     SL   N+ + M++ GSKGS INISQM A VGQQ V G+R P G
Sbjct: 735 SMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFG 794

Query: 684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
           F  R+LPHF +    P A+GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+TGY+ 
Sbjct: 795 FKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 854

Query: 744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           RRL+KALEDLS +YD +VRN+ G I+QFLYG+DG+D
Sbjct: 855 RRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLD 890



 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 194/401 (48%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1068 NRWDRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKD 1127

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L  +   +  A+ ++  +E T L  +    +I     +    I  DM+ ++
Sbjct: 1128 IKTPSMAVYLNTHLGTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIVEDMDMVE 1187

Query: 1014 DAHLCINADIVKESIVQT--------PKIKLKQQHIKVLDF--RKLEIFPP--------- 1054
             ++  I  D    +  Q+         + KL  + IK+ D   R  E +P          
Sbjct: 1188 -SYFLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDN 1246

Query: 1055 -VDKSKIHFELYSLKN----------------------VLPMVIVKGIKTVERVVIA--- 1088
              D+  I        N                      +L  + ++G+  VER  +    
Sbjct: 1247 NADEQVIRIRTIRTDNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGT 1306

Query: 1089 ---EKEKEKRKVKENGEK-KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
               E +      K++ +K  ++ L   G+ L+ V+  +G+D  +T +N ++++ +  GIE
Sbjct: 1307 RLVEDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+ +G  D   G+SE +++G   P+GTG   +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDV 1467


>gi|12642610|gb|AAK00309.1|AF315819_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Botryocladia
           uvarioides]
          Length = 1712

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 304/756 (40%), Positives = 437/756 (57%), Gaps = 48/756 (6%)

Query: 91  VLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           V  +FKR++D D   L L  R   PE LI+T + VPP+ +RPSV M G   NE+D+T +L
Sbjct: 116 VYDIFKRISDRDSLALGLDPRWVRPENLILTVLPVPPLQVRPSV-MHGGLRNEDDLTNKL 174

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM--QVARPLSGF 205
             I++ N  L+    +   A       + +Q  VA Y+N+++ GV  +     +R +   
Sbjct: 175 GDIVKNNNMLRDMEAQGTVAHLLREQLDLVQYHVATYMNNEIPGVSQATVRGGSRAIKSI 234

Query: 206 VQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNI 265
            QR KGK+GR RGNL GKRV+++ RTVI+PDPNL + EV +P  +A+ LT+PE V+ +N 
Sbjct: 235 GQRFKGKEGRVRGNLMGKRVDFSARTVITPDPNLLLHEVGVPYSIAKNLTFPETVTSYNY 294

Query: 266 EKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLF 325
            ++R+ ++NGP +YPGA+ I   DG  +V      ++ +  L+ G  V RH++DGD VLF
Sbjct: 295 AEMRKLVENGPTEYPGAKYIERDDGQ-KVNLSYVADRTSTNLEIGFKVIRHIKDGDYVLF 353

Query: 326 NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
           NRQPSLH+MSIM HR R++P+ T R N SV +PYNADFDGDEMN+HVPQ+   R E   L
Sbjct: 354 NRQPSLHKMSIMGHRIRVLPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSHGTRAEVQEL 413

Query: 386 MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPT 445
           M V + + +P+  + ++   QD L    L T++DTF +R     +  ++GD  D V +P 
Sbjct: 414 MLVPHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFIERDVMMNLLMHVGD-WDGV-VPE 471

Query: 446 PAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 505
           PAI KP  LWTGKQ+FS+++ P       VNL     T+         DEE   E + P 
Sbjct: 472 PAIYKPRPLWTGKQIFSLILPP-------VNLIRYNITHP--------DEEQ--EEISPG 514

Query: 506 DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
           D  VY    +LI G + K T+G+ + +GL  V  ++ G   T+  ++++  L   ++   
Sbjct: 515 DTKVYISQGQLICGIVDKKTVGS-SANGLIHVTWKECGPKVTAMMISQIQVLVNHYVLQR 573

Query: 566 GFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITD 625
           G SIGI D     +        I    E   + IK+    +L L PG    ++ E  +  
Sbjct: 574 GQSIGIGDTIADDDTMSNVINTIKGAKEEVKMLIKKAQMKELVLLPGKGMMESFETEVNK 633

Query: 626 ILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFI 685
           +LN  R+ +G +   SL   N+   M   GSKGS INISQ+ ACVGQQ+V G+R   GF 
Sbjct: 634 VLNGARDKSGASAQKSLLKSNNIKRMVSAGSKGSFINISQICACVGQQNVEGKRIAYGFN 693

Query: 686 DRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRR 745
            R+LPHF      P ++GFV NS+  GL+ +EFFFH MGGREGL+DTAVKTA+TGY+ RR
Sbjct: 694 GRTLPHFATDDLGPESRGFVENSYLRGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 753

Query: 746 LIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF--DRLLMKVKAT 803
           LIKA+ED+ ++YD +VRN+   +V+FLYG+DGMD   +E ++   L    +RL       
Sbjct: 754 LIKAMEDVMVRYDGTVRNSANHVVEFLYGEDGMDATLLEDQTLRTLKMSDERLF------ 807

Query: 804 CPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLN 839
                + YL P           A +GK+S    +L+
Sbjct: 808 ----DEYYLDPTD---------AKFGKDSRGRPYLD 830



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 109/182 (59%), Gaps = 7/182 (3%)

Query: 1067 LKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKK---KYRLLVEGTGLQAVMGAEG 1123
            L N +P+    GIK + +V + + +++    KE G+ K   ++ L  +G  L+AVM  E 
Sbjct: 1227 LLNKMPL---GGIKDIHKVFMRQAKRQYID-KEYGKYKTDEEWVLDTDGVNLKAVMCHEA 1282

Query: 1124 IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
            +D  +T SN I E+ +TLGIEA R  ++ EI   +   G  ++ RH+ +L D+MT+RG +
Sbjct: 1283 VDHTRTMSNDIVEIFETLGIEAVREALLQEIRGVISFDGAYVNYRHLSILVDVMTYRGHL 1342

Query: 1184 LGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGIL 1243
            + ITR GI ++D   LM  SFE+T D L  A+  G  D ++GVSE I++G   P+GTG  
Sbjct: 1343 MAITRHGINRVDTGPLMKCSFEETTDILLEAATFGMRDNLQGVSENIVLGQLAPVGTGSF 1402

Query: 1244 KI 1245
            K+
Sbjct: 1403 KM 1404



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 67/111 (60%), Gaps = 2/111 (1%)

Query: 905  GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL 964
            G  IGAI AQSIGEP TQMTL TFH+AGV++ N+T GVPR++EIIN +K   TP +T  L
Sbjct: 1006 GENIGAIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVSKHTKTPSLTVYL 1065

Query: 965  --ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
              + + ++  A+ ++  ++ T L  V  S  I       + VI  D E + 
Sbjct: 1066 RDKYSKDKGKAKEIQASLQATNLYDVTTSTAIYYDPDPETTVIEEDREMVH 1116


>gi|397135920|gb|AFO11455.1| RNA polymerase I, partial [Nakazawaea holstii]
          Length = 870

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 285/713 (39%), Positives = 427/713 (59%), Gaps = 41/713 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  +L +FK ++  D   L  ++   RPE ++IT + VPP  +RPSV ++ +  +E+
Sbjct: 12  LLTPGEILNVFKHISPEDSYKLGFNDDYARPEWMLITVLPVPPPHVRPSVQVNDTARSED 71

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA- 199
           D+T +L  I++ N S+Q+ L    S    +A +E L Q  VA Y+++D+ G P ++Q + 
Sbjct: 72  DLTFKLADIVKYNMSVQK-LEMDGSPQHVIAEYEALLQFHVATYMDNDIAGQPQALQKSG 130

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +P  +AR LTYPE 
Sbjct: 131 RPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPRSIARTLTYPEM 190

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI KL + ++NGP+++PGAR + + D   R+     +    + L+ G IV+RHL D
Sbjct: 191 VTPYNIHKLTELVRNGPNEHPGARYV-FRDTGERIDLKYHKRAGDIALQYGWIVERHLMD 249

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
            D VLFNRQPSLH+MS+M HR ++MP+ T R N S  +PYNADFDGDEMN+HVPQ+EE R
Sbjct: 250 DDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSATSPYNADFDGDEMNLHVPQSEETR 309

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   +  V   + +P++ + ++   QD L     +T +D F +      +  ++ D   
Sbjct: 310 AELSQICAVPLQIVSPQSNKPIMGIVQDTLCGVRKMTLRDVFIEYDEVMNILYWIPDWDG 369

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
           R+  P P I+KP  LWTGKQ+ S++I P       +N+  K++ ++              
Sbjct: 370 RI--PEPTIVKPKPLWTGKQMLSMVI-PKG-----INIERKDEKFT-------------- 407

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
             +  +D  +   + E++ G + K T+G     GL   + R+ G  A +     + K+  
Sbjct: 408 -YLSKDDTGMLIVDGEIMLGVVNKKTVG-ATGGGLIHAVFREKGPQACATLFGNIQKVVN 465

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKG-KLISENYEVCNVKIKEY----NEGKLQLKPGCD 614
            W+ ++GFSIGI D      ++D    + I++       K++E        +L  +PG  
Sbjct: 466 YWLLHNGFSIGIGDT-----IADAPTVRSITDTINAAKDKVQEIITKAQNNQLPPEPGMT 520

Query: 615 AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
             ++ E  ++ +LN+ R+D GKA   SL   N+   M   GSKGS INISQM ACVGQQ 
Sbjct: 521 LRESFEQNVSQVLNQARDDVGKATADSLQDWNNVKQMVSAGSKGSNINISQMSACVGQQI 580

Query: 675 VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
           V G+R P GF DRSLPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DTAV
Sbjct: 581 VEGKRIPFGFSDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAV 640

Query: 735 KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           KTA+TGY+ RRL+KALED+ + YD + RN+ G ++QF+YG+DG+D   +E ++
Sbjct: 641 KTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVLQFVYGEDGLDATQVEKQA 693


>gi|254169021|ref|ZP_04875859.1| DNA-directed RNA polymerase subunit A' [Aciduliprofundum boonei
           T469]
 gi|197621991|gb|EDY34568.1| DNA-directed RNA polymerase subunit A' [Aciduliprofundum boonei
           T469]
          Length = 895

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 292/737 (39%), Positives = 430/737 (58%), Gaps = 35/737 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  +    +R+ D D  +L +   + RPE +++T + VPP+ +RP++ ++  + +E+D
Sbjct: 179 LTPKEIRERLERIPDEDLPLLGMNPETARPEWMVLTVLPVPPVNVRPTITLETGERSEDD 238

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N  L++              WE LQ  V  Y ++   G+P +  +  RP
Sbjct: 239 LTHKLVDIIRINQRLRENRDSGAPQLIIEDLWELLQYHVTTYFDNQTSGIPPARHRSGRP 298

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L   VQRLKGK+GRFR NLSGKRV ++ RTVISP+P L I EV +P   AR LT P  V+
Sbjct: 299 LKTLVQRLKGKEGRFRSNLSGKRVNFSARTVISPEPFLSINEVGVPEAAARELTVPITVT 358

Query: 262 DHNIEKLRQCIQNGP----DKY-PGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
           ++NIEK+++ ++ G     DKY PGA  +  PDG    +  +    ++ +L  G +V+RH
Sbjct: 359 EYNIEKMKEIVRRGSNPKGDKYLPGANYVIRPDGRRIKITDRNAEDVSKKLDIGWVVERH 418

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           L DGDVVLFNRQPSLHRMS+M H  ++MP RT RFN +VC PYNADFDGDEMN+HV Q+E
Sbjct: 419 LIDGDVVLFNRQPSLHRMSMMGHLVKVMPNRTFRFNLAVCPPYNADFDGDEMNLHVLQSE 478

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           EAR EA +LM VQ ++ +P+ G  ++    D +T+ FL+T K+  + +     M  Y+  
Sbjct: 479 EARAEAKILMLVQEHILSPRFGGPIIGGIHDHITAMFLLTHKNPKFTKEQTIHMLSYL-- 536

Query: 437 GMDRVDLPTPAILKP-VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
             D  +LP P   +   E + GK+LFS+++    NM  + +        +NK +      
Sbjct: 537 --DYDELPEPHKDENGNEFYYGKELFSLILPKDLNME-FKSKICDPSVCNNKCV------ 587

Query: 496 EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
                  CP D +V  RN +L++G + +  +G+     L  +  R  G+      ++ + 
Sbjct: 588 ----HEACPIDAYVVIRNGKLVAGTIDENAIGSMKGKLLDRIAKR--GSKEARKFIDNMT 641

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           +L+   I   GF+ GIDD    +E   +  ++I E+ +  +  I+ Y +G LQ  PG   
Sbjct: 642 RLAVGVISYRGFTSGIDDEDIPEEAIIQIHEIIKESIKKTDELIELYKQGLLQPAPGRSV 701

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            +TLE  I  +L   R++AGK     L   NS +IM++ G++ S +N+SQM   +GQQSV
Sbjct: 702 EETLEMEIMRVLAHARDEAGKIASKHLGLENSSVIMARSGARASMLNLSQMAGSIGQQSV 761

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R   G+ DR+LPHF R      A+GFV +S+  GLS TE+FFH+MGGREGLVDTAV+
Sbjct: 762 RGQRLHRGYQDRTLPHFKRGDLGALARGFVESSYKKGLSPTEYFFHSMGGREGLVDTAVR 821

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR 795
           T+ +GYM RRLI ALEDL +  D  V +  G +VQF+YG+DG+DP    G  GE +N D 
Sbjct: 822 TSRSGYMQRRLINALEDLKVIEDGKVVDTAGNVVQFIYGEDGVDPTRSSG--GENVNMDE 879

Query: 796 LLMKVKATCPPAGQRYL 812
           +L  V       G +YL
Sbjct: 880 ILTDV------LGDKYL 890


>gi|120561231|gb|ABM27001.1| RNA polymerase II largest subunit, partial [Coelomomyces stegomyiae]
          Length = 1014

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 332/905 (36%), Positives = 499/905 (55%), Gaps = 91/905 (10%)

Query: 86   LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
            L+P  VL + K+++D D + L +     RPE +I+T + VPP  +RP++++DG+   E+D
Sbjct: 132  LSPAQVLQILKKISDADADALGMVPEFSRPEWMILTVLPVPPPPVRPTILVDGTSRGEDD 191

Query: 143  ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARP 201
            +T +L  +I+ NA LQ+   E     +     + LQ  VA ++++++ G+P +MQ   RP
Sbjct: 192  LTYKLCDVIKANACLQRAEAEGAPGHRIKDHEDFLQFHVATFVDNEISGLPRAMQRSGRP 251

Query: 202  LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
            +     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL I EV +P  +AR LT PE V+
Sbjct: 252  IKAIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTLPEIVT 311

Query: 262  DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
             +NI  L+  ++NGP  +PGA+ +   +G  R+      N+  + L+ G IV+RH+ DGD
Sbjct: 312  RYNIGHLQALLKNGPSTHPGAKYVIKSNGD-RIDLRYTGNKGDLNLQYGWIVERHINDGD 370

Query: 322  VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
            +++FNRQPSLH+MS+M H+ ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+ EA+ E
Sbjct: 371  IIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVEAKAE 430

Query: 382  ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG-DGMDR 440
               L  V   + +P+  + ++   QD L      T++DTF  ++  ++MC  M   G D 
Sbjct: 431  IQQLCMVPLQIVSPQGNKPVMGIVQDTLCGIRKFTQRDTFLTKS--TVMCILMWVPGWDG 488

Query: 441  VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
             ++P PAILKP  LWTGKQ+ S++I         VN      T+ +       DE+  I 
Sbjct: 489  -NVPIPAILKPKPLWTGKQILSLIIPK-------VNCIAFHSTHPD-------DEKTDIS 533

Query: 501  TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
               P D  V   +  L++G + K T+G  +  GL  V+  +YG+ A    +N    +   
Sbjct: 534  ---PGDTKVIVEDGHLLAGIVCKKTVGTSS-GGLVHVIWMEYGSEACKHFLNGCQTIVNY 589

Query: 561  WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
            W+ ++GFSIGI D     +  +    +I       +  I E  +  L+ +PG    +T E
Sbjct: 590  WLIHNGFSIGIGDTIADNKAMEMINDIILAAKNQVSKLIGEAQKDHLKPQPGLTIRETFE 649

Query: 621  AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
            A +   L+     AG A   S   +N+   M   GSKGS INISQM ACVGQQ+V G+R 
Sbjct: 650  AEVNQTLSDTVTSAGAAAQRSFKEQNNVKQMVVAGSKGSYINISQMSACVGQQNVEGKRI 709

Query: 681  PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
            P GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+TG
Sbjct: 710  PFGFKYRTLPHFVKDDHSPESRGFVENSYLRGLNPQEFFFHAMGGREGLIDTAVKTAETG 769

Query: 741  YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF------- 793
            Y+ RRL+KALED+ ++YD +VRNA G I+QF+YG+DGMD   +E ++ + L         
Sbjct: 770  YIQRRLVKALEDVMVKYDGTVRNAQGNIIQFVYGEDGMDAIQVEKQTLDSLRMNDSRFES 829

Query: 794  ----DRLLMKVKATCPPAG-----QRYLSPQQVSEIVEKQLAAYGKE-SC-SEAFLN--- 839
                D + ++ KA  PP       Q+ +    V ++++++ +    + +C  + FL    
Sbjct: 830  KYRIDVMDIEGKAGLPPGCVEFGIQQEMQSIDVQKLLDEEFSQLKDDRACLRKIFLTGDA 889

Query: 840  ------SLRKFFEGQQD--KLDK-------------KIKFVED----IGWDDK------- 867
                  +L++     Q+  K+DK             +++ + D    I  DDK       
Sbjct: 890  NWPLPMNLKRIIWNAQNLFKIDKQRPSNLHPDYVVNQVRGLCDKLTVIRGDDKISLEAQK 949

Query: 868  -----SQILEEVTHKTSGITE------KQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSI 916
                 +QIL   T  T  + E      +  +  I     R+    V  G  +G I AQSI
Sbjct: 950  NATLLTQILIRSTLATRRVIEEFHLDSRAFDYIIGEITFRFSQSFVSPGEMVGIIAAQSI 1009

Query: 917  GEPGT 921
            GEP T
Sbjct: 1010 GEPAT 1014


>gi|188532139|gb|ACD63081.1| RNA polymerase II largest subunit [Asparagus officinalis]
          Length = 1009

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 302/724 (41%), Positives = 429/724 (59%), Gaps = 36/724 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D DC +L L+    RP+ +I+  + +PP  +RPSV+MD S  +E+D
Sbjct: 132 LSAERVLSVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSARSEDD 191

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++      A       + LQ  +A Y ++++ G P + Q + RP
Sbjct: 192 LTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNELPGQPRATQRSGRP 251

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P  +A  LTYPE V+
Sbjct: 252 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVT 311

Query: 262 DHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHL 317
            +NIE+L++ ++ GP   PG   A+ I   DG    L Y K  +   +EL  G  V+RHL
Sbjct: 312 PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL--GYKVERHL 369

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E
Sbjct: 370 NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 429

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
            R E L LM V   + +P++   ++   QD L     IT++DTF ++  F  +  +  D 
Sbjct: 430 TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 489

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
             +V  PTPAILKP  LWTGKQ+F+++I    N+    +      + S     T GD ++
Sbjct: 490 DGKV--PTPAILKPRPLWTGKQVFNLIIPKQINL----SRASAWHSESETGFITPGDTQV 543

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
           RIE              EL++G L K TLG      ++ + +   G  A    +     L
Sbjct: 544 RIE------------KGELLTGTLCKKTLGTSTGSLIHVIWV---GPDAARKFLGHTQWL 588

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
              W+  + FSIGI D        +K  + IS+        IK   + +L+ +PG    +
Sbjct: 589 VNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKDLIKLAQDKQLEPEPGRTMME 648

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           + E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G
Sbjct: 649 SFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 708

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GFI R+LPHF +    P ++GFV NS+  GL+  EFFF+ MGGREGL+DTAVKT+
Sbjct: 709 KRIPYGFIGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFYAMGGREGLIDTAVKTS 768

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +       D L 
Sbjct: 769 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK-----LDSLK 823

Query: 798 MKVK 801
           MK K
Sbjct: 824 MKKK 827


>gi|33326209|gb|AAQ08514.1| RNA polymerase II largest subunit [Welwitschia mirabilis]
          Length = 1013

 Score =  518 bits (1333), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 294/720 (40%), Positives = 424/720 (58%), Gaps = 30/720 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + KR++D +C++L  +    RP+ +I+  + +PP  +RPSV+M+ +  +E+D
Sbjct: 134 LSAERVLNILKRISDEECQMLGFNPKYARPDWMILQVLPIPPPPVRPSVMMNSTTRSEDD 193

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II+ N +L+++      A       + LQ  VA Y ++++ G P + Q + RP
Sbjct: 194 LTHQLAMIIRHNENLKKQEKNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRP 253

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I E+ +P  +A  LTYPE V+
Sbjct: 254 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPEIVT 313

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRY--PDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
            +NIE+L++ ++ GP   PG    +Y   D   R+     +      L+ G  V+RHL D
Sbjct: 314 PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLND 373

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R
Sbjct: 374 GDLVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 433

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E + LM V   + +P++   ++   QD L     +T+ DTF ++  F  +  +  +   
Sbjct: 434 AEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKVTKGDTFTEKDVFMNILMWWEEFEG 493

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
           ++  P PAILKP  +WTGKQ+F+++I    N+  Y          S K   T GD  +RI
Sbjct: 494 KI--PNPAILKPRPIWTGKQVFNLIIPKQINLIRYSAW----HNESEKGFPTPGDTVVRI 547

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
           E              E++SG L K TLG+ +   L  V+  + G  A    +     L  
Sbjct: 548 E------------KGEVLSGTLCKKTLGSSS-GSLIHVIWEEVGPDAARKFLGHTQWLVN 594

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
            W+   GFSIGI D        +K  + I+         I++  E KL+ +PG    ++ 
Sbjct: 595 YWLLQQGFSIGIGDTIADAATMEKINETIANAKIKVQQLIEKAQEKKLEAEPGRTMMESF 654

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E  +  +LN+ R+DAG +   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R
Sbjct: 655 ENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 714

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GF  R+LPHF +  K P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++T
Sbjct: 715 IPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 774

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 799
           GY+ RRL+KA+ED+ ++YD +VRN+ G + QFLYG+DGMD   +E +       D L MK
Sbjct: 775 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVTQFLYGEDGMDAVWIESQK-----LDSLKMK 829


>gi|223992753|ref|XP_002286060.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
           pseudonana CCMP1335]
 gi|220977375|gb|EED95701.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
           pseudonana CCMP1335]
          Length = 1627

 Score =  518 bits (1333), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 286/708 (40%), Positives = 421/708 (59%), Gaps = 29/708 (4%)

Query: 94  LFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKR 149
           +FK+M D + + L L     RPE + ++ + VPP+ +RPSV+M G +QS+E+D+T +L  
Sbjct: 214 IFKKMRDDEVKALGLDVTWARPEWMCVSVMPVPPLHVRPSVVMGGGAQSSEDDLTHQLVN 273

Query: 150 IIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVP-FSMQVARPLSGFVQR 208
           I+++N +L+  +             + LQ  VA ++N+++RG+P  + +  RPL    QR
Sbjct: 274 IVKSNIALKTAIQNGEPNIIVEQFEQALQHNVAAFVNNEMRGMPQITQRSGRPLKTLAQR 333

Query: 209 LKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKL 268
           LK K+GR RGNL GKRV+++ RTVI+ DPNL I +V +P  +A  LT P RV+  NI++L
Sbjct: 334 LKAKEGRIRGNLMGKRVDFSARTVITADPNLGIHQVGVPRSVAMNLTVPTRVTPFNIQEL 393

Query: 269 RQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQ 328
              + NGP ++PGA+ I   DG  R+     +N+  + L +G IV+RHL DGD+VLFNRQ
Sbjct: 394 SALVANGPTEHPGAKHIIRSDGL-RIDLRYVKNKSDLLLANGWIVERHLRDGDIVLFNRQ 452

Query: 329 PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGV 388
           PSLH+MSIM H A+++ W T R N S  +PYNADFDGDEMN+HVPQ+  AR EA L+M  
Sbjct: 453 PSLHKMSIMGHMAKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQSLPARAEAELMMHS 512

Query: 389 QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAI 448
              + + ++   ++   QD L +   +T++D F  +     +  ++ D   R+  P PAI
Sbjct: 513 PRVIVSGQSNRPVMGIVQDSLLAVQKMTKRDVFVKKDLMMNILMWVEDWDGRI--PPPAI 570

Query: 449 LKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGF 508
            +P ELWTGKQ+ S+++         +NLT K                    T    D  
Sbjct: 571 YRPEELWTGKQIMSMILPK-------INLTGKANNGGPG-----------PNTFNAYDNL 612

Query: 509 VYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFS 568
           V     ELI G + K T+G+G   GL      D G   T+  MN+   ++  W+    FS
Sbjct: 613 VRVMEGELIEGTIDKKTIGSG-MGGLIHTAWLDVGHEDTARFMNQTQVVTNYWVLQSSFS 671

Query: 569 IGIDDVQPKKELSDKKGKLISE-NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDIL 627
           IG+ D        ++    I++   +V ++ +++   G+L+ +PG    ++ E  +  +L
Sbjct: 672 IGVCDTIADFATMEQIASTINKAKLQVLDL-VRQGQRGELETQPGRTMIESFEQFVNKVL 730

Query: 628 NRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDR 687
           N  R+ AGK+   SL   NS   M   GSKGS INISQ++ACVGQQ+V G R P GF  R
Sbjct: 731 NTARDHAGKSAQASLDETNSVKAMVTAGSKGSFINISQIIACVGQQNVEGNRIPYGFKRR 790

Query: 688 SLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLI 747
           +LPHF +    P ++GFV NS+ SGL+  EFFFH MGGREGL+DTA KTA+TGY+ RRL+
Sbjct: 791 TLPHFSKDDLGPESRGFVENSYLSGLTPQEFFFHAMGGREGLIDTACKTAETGYIQRRLV 850

Query: 748 KALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR 795
           KA+E +  +YD ++R +GG IVQFLYG+DGMD   +E +S + L  ++
Sbjct: 851 KAMETVMARYDGTLRTSGGQIVQFLYGEDGMDAVWIERQSFDSLTLNK 898



 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 99/180 (55%), Gaps = 2/180 (1%)

Query: 1068 KNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGE--KKKYRLLVEGTGLQAVMGAEGID 1125
            KN+L  + ++G+  V++V +    K+     E G     ++ L  +GT L +V+G + +D
Sbjct: 1298 KNMLHTLKLRGVDDVKKVFMRGGAKKTVWDDEKGFGITDEWVLETDGTNLMSVLGIDYVD 1357

Query: 1126 GCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLG 1185
              +T SN I EV   LGIE  R  I+ E+   +   G  ++ RH+  L D+MT  G ++ 
Sbjct: 1358 ATRTISNDIVEVFMVLGIEGVRAAILSELRNVISFDGSYVNYRHLACLVDVMTMHGHLMA 1417

Query: 1186 ITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            + R GI +++   L+  SFE+T D L +A+    ++ + GV+E I+MG    +GTG + +
Sbjct: 1418 VDRHGINRVESGPLLRCSFEETVDMLNDAACFAEEEVLRGVTENIMMGQLARVGTGDMDL 1477



 Score = 97.1 bits (240), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 77/124 (62%), Gaps = 2/124 (1%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+   +V  G   G + AQSIGEP TQMTL TFH+AGV++ N+T GVPR+KEIIN AK 
Sbjct: 1070 ARFHHAKVSPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKT 1129

Query: 955  ISTPIITAELE--CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            + TP +T  L+   + + + A++V   IE T+L  + K  +I       + ++A D E +
Sbjct: 1130 VKTPGLTIYLQNHVSGDADVAKLVHSMIEYTVLTDLTKLTEIYYDPDPVNTIVAKDREFV 1189

Query: 1013 QDAH 1016
            ++ +
Sbjct: 1190 KEYY 1193


>gi|289596765|ref|YP_003483461.1| DNA-directed RNA polymerase subunit A' [Aciduliprofundum boonei
           T469]
 gi|289534552|gb|ADD08899.1| DNA-directed RNA polymerase subunit A' [Aciduliprofundum boonei
           T469]
          Length = 895

 Score =  518 bits (1333), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 292/737 (39%), Positives = 430/737 (58%), Gaps = 35/737 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  +    +R+ D D  +L +   + RPE +++T + VPP+ +RP++ ++  + +E+D
Sbjct: 179 LTPKEIRERLERIPDEDLPLLGMNPETARPEWMVLTVLPVPPVNVRPTITLETGERSEDD 238

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N  L++              WE LQ  V  Y ++   G+P +  +  RP
Sbjct: 239 LTHKLVDIIRINQRLRENRDSGAPQLIIEDLWELLQYHVTTYFDNQTSGIPPARHRSGRP 298

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L   VQRLKGK+GRFR NLSGKRV ++ RTVISP+P L I EV +P   AR LT P  V+
Sbjct: 299 LKTLVQRLKGKEGRFRSNLSGKRVNFSARTVISPEPFLSINEVGVPEAAARELTVPITVT 358

Query: 262 DHNIEKLRQCIQNGP----DKY-PGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
           ++NIEK+++ ++ G     DKY PGA  +  PDG    +  +    ++ +L  G +V+RH
Sbjct: 359 EYNIEKMKEIVRRGSNPKGDKYLPGANYVIRPDGRRIKITDRNAEDVSKKLDIGWVVERH 418

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           L DGDVVLFNRQPSLHRMS+M H  ++MP RT RFN +VC PYNADFDGDEMN+HV Q+E
Sbjct: 419 LIDGDVVLFNRQPSLHRMSMMGHLVKVMPNRTFRFNLAVCPPYNADFDGDEMNLHVLQSE 478

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           EAR EA +LM VQ ++ +P+ G  ++    D +T+ FL+T K+  + +     M  Y+  
Sbjct: 479 EARAEAKILMLVQEHILSPRFGGPIIGGIHDHITAMFLLTHKNPKFTKEQAIHMLSYL-- 536

Query: 437 GMDRVDLPTPAILKP-VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
             D  +LP P   +   E + GK+LFS+++    NM  + +        +NK +      
Sbjct: 537 --DYDELPEPHKDENGNEFYYGKELFSLILPKDLNME-FKSKICDPSVCNNKCV------ 587

Query: 496 EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
                  CP D +V  RN +L++G + +  +G+     L  +  R  G+      ++ + 
Sbjct: 588 ----HEACPIDAYVVIRNGKLVAGTIDENAIGSMKGKLLDRIAKR--GSKEAREFIDNMT 641

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           +L+   I   GF+ GIDD    +E   +  ++I E+ +  +  I+ Y +G LQ  PG   
Sbjct: 642 RLAVGVISYRGFTSGIDDEDIPEEAIIQIHEIIKESIKKTDELIELYKQGLLQPAPGRSV 701

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            +TLE  I  +L   R++AGK     L   NS +IM++ G++ S +N+SQM   +GQQSV
Sbjct: 702 EETLEMEIMRVLAHARDEAGKIASKHLGLENSSVIMARSGARASMLNLSQMAGSIGQQSV 761

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R   G+ DR+LPHF R      A+GFV +S+  GLS TE+FFH+MGGREGLVDTAV+
Sbjct: 762 RGQRLHRGYQDRTLPHFKRGDLGALARGFVESSYKKGLSPTEYFFHSMGGREGLVDTAVR 821

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR 795
           T+ +GYM RRLI ALEDL +  D  V +  G +VQF+YG+DG+DP    G  GE +N D 
Sbjct: 822 TSRSGYMQRRLINALEDLKVIEDGKVVDTAGNVVQFIYGEDGVDPTRSSG--GENVNMDE 879

Query: 796 LLMKVKATCPPAGQRYL 812
           +L  V       G +YL
Sbjct: 880 ILTDV------LGDKYL 890


>gi|413915244|gb|AFW21484.1| RNA polymerase II largest subunit [Claviceps paspali]
          Length = 1764

 Score =  518 bits (1333), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 293/696 (42%), Positives = 426/696 (61%), Gaps = 34/696 (4%)

Query: 94  LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS---NENDITERL 147
           + KR+++ D   + L+    RPE LIIT + VPP  +RPS+ MDG+ +   NE+D+T +L
Sbjct: 219 ILKRISEEDLRHMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+ N +++Q + E +    +    E LQ  VA Y+++D+ G P ++Q + RP+    
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIR 338

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LTYPE V+ +NI 
Sbjct: 339 ARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIG 398

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL Q ++NGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL DGD ++FN
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGT-RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFN 457

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+ S+M H+ R+MP+ T R N SV +PYNADFDGDEMN+HVPQTEE R E   L 
Sbjct: 458 RQPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELC 517

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
            V NN+ +P+    L+   QD L  ++ + R+DTF D+     M  ++   DG+    +P
Sbjct: 518 LVPNNIVSPQKNGPLMGIVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGV----IP 573

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAILKP   WTGKQL S++I    ++            +S +    + + +I ++    
Sbjct: 574 QPAILKPRPRWTGKQLISMVIPKEISL------------HSPESSGGQDNADIPLK---- 617

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  +  ++ EL+ G L K  +G+    G+  +   + G       +N + ++   W+ N
Sbjct: 618 -DTGLLIQSGELLYGLLKKKNIGSA-AGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLN 675

Query: 565 HGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
           +G SIGI D  P K+  +K +  + ++  EV  +   +    +L+  PG +   T E  +
Sbjct: 676 NGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVAKL-TAQATANELEALPGMNVRATFENKV 734

Query: 624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
           +  LN  R+ AG     SL   N+ + M++ GSKGS INISQM A VGQQ V G+R P G
Sbjct: 735 SMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFG 794

Query: 684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
           F  R+LPHF +    P A+GFV NS+  GL+ +EFFFH M GREGL+DTAVKTA+TGY+ 
Sbjct: 795 FKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQ 854

Query: 744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           RRL+KALEDLS +YD +VRN+ G I+QFLYG+DG+D
Sbjct: 855 RRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLD 890



 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/401 (29%), Positives = 200/401 (49%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1068 SRWDRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKD 1127

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L  +   +  A+ ++  +E T L  +    +I     +    IA DM+ ++
Sbjct: 1128 IKTPSMAVYLNTHLGTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTNIAEDMDMVE 1187

Query: 1014 DAHLCINADIVKESIVQT--------PKIKLKQQHIKVLDF--RKLEIFPP--------- 1054
             ++  I  D    +  Q+         + KL  + IK+ D   R  E +P          
Sbjct: 1188 -SYFLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAVIFSDN 1246

Query: 1055 -VDKSKIHFE---------------------LYSLK-NVLPMVIVKGIKTVERV------ 1085
              D+  I                        L  L+ ++L  + ++G+  VER       
Sbjct: 1247 NADEQVIRIRTIRSDSQKDEEGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGT 1306

Query: 1086 -VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
             +I +++  +   K++ +  ++ L   G+ L+ V+  +G+D  +T +N ++++ +  GIE
Sbjct: 1307 RLIVDEDGSEMAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSF 1426

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+ +G  D   G+SE +++G   P+GTG   +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDV 1467


>gi|120561203|gb|ABM26987.1| RNA polymerase II largest subunit, partial [Taphrina deformans]
          Length = 1001

 Score =  517 bits (1332), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 289/706 (40%), Positives = 424/706 (60%), Gaps = 34/706 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P+ V  +F+ +   D   + LSE   RP+ +IIT + VPP  +RPSV   G +S++ 
Sbjct: 125 LLTPMEVHSVFRHIPSVDLVRMGLSENYARPDWMIITVLPVPPPTVRPSVEQGGMKSHD- 183

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  II+ NA++++  VE   A       + LQ  VA Y+++D+ G P ++Q + R
Sbjct: 184 DLTYKLADIIKANANVKKGEVEGAPAHVIKEFEDLLQYHVATYMDNDIAGQPKALQKSGR 243

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
            +     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYPERV
Sbjct: 244 AIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPERV 303

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           +  NI KL+Q ++NGPD++PGA+ I   D   R+     +N     L+ G  V+RHL++G
Sbjct: 304 TPFNIHKLQQLVRNGPDEHPGAKYI-LRDTGERIDLRYNKNAGDTPLQYGWTVERHLQNG 362

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           DVV+FNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R 
Sbjct: 363 DVVIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRA 422

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGM 438
           E   +  V   +  P+  +  +   QD L      T +DTF  ++     LM     +G+
Sbjct: 423 EITEICMVPRQILAPQANKPCMGIVQDALCGIRKFTIRDTFMAKSHVMNILMWVPGWNGI 482

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
               +P PAILKP +LWTGKQ+ S++I    N                    +  D++  
Sbjct: 483 ----VPPPAILKPQQLWTGKQILSMVIPKGIN-------------------HSRNDDKQG 519

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
           ++   PND  +   + E++ G + K T+G+ ++ GL  +++++ G  A          + 
Sbjct: 520 LDN--PNDVGMMIEDGEILYGVVNKKTVGS-SQGGLIHIIMKEKGWEACRDFFTATQMVV 576

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
             W  ++GFSIGI D    ++  ++    I++        + +    KL+ +PG    ++
Sbjct: 577 NYWFLHNGFSIGIGDTIADRQTMEEITNEIAKAKLKVQGIVSDAQLNKLKQEPGMTLRES 636

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            EA ++ +LN  R+  GK    SL  +N+   M   GSKGS INISQM ACVGQQ V G+
Sbjct: 637 FEAGVSQVLNGARDTVGKNAESSLSKQNAVKQMVIAGSKGSFINISQMSACVGQQMVEGK 696

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R P GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+
Sbjct: 697 RIPYGFKFRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 756

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           TGY+ RRL+KALED+ ++YD +VRN+ G I+ F+YG+DG+D A++E
Sbjct: 757 TGYIQRRLVKALEDVGVKYDGTVRNSLGDIINFVYGEDGLDAASVE 802


>gi|326431524|gb|EGD77094.1| polymerase II polypeptide A [Salpingoeca sp. ATCC 50818]
          Length = 1834

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 307/781 (39%), Positives = 444/781 (56%), Gaps = 44/781 (5%)

Query: 69  ITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPI 125
           I  TK+    V   T  ++   +  L   ++  D E L       RP+ L+IT + VPP+
Sbjct: 201 IMETKDDNGLVTART--MSTEEIYELLHNISHADAEALGFDPHHTRPDWLMITCLPVPPL 258

Query: 126 AIRPSVIMDGSQSNENDITERLKRIIQTNASLQQ--------ELVEANSAFKSLAGWETL 177
           A+RPSV M     + +D+T +   I++ N  L++         ++E N  +        L
Sbjct: 259 AVRPSVQMGSGGRSHDDLTNQYAEIVKANNGLRENEQSGAPRHVIEENVLY--------L 310

Query: 178 QVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPD 236
           Q +VA   ++++  +P SMQ + RP+    QRLKGK+GR RGNL GKRV+++ RTVI+PD
Sbjct: 311 QFKVATLFDNNLPHMPMSMQKSGRPIKAISQRLKGKEGRIRGNLMGKRVDFSARTVINPD 370

Query: 237 PNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY 296
           PNL+I +V +P  +A  LT PERV++ NI  ++Q +  GP+++PGA+ I   DG  R+  
Sbjct: 371 PNLEIDQVGVPTSVALTLTVPERVTNFNINTMKQYVDRGPNQHPGAKYIIRDDG-QRIDL 429

Query: 297 GKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 356
              RN + + L+ G IV+RHL+D DV++FNRQP+LH+MS+M HR +++PW T R N SV 
Sbjct: 430 RHARNAMDLNLQPGYIVERHLKDDDVIIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVT 489

Query: 357 NPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
           +PYNADFDGDEMN+HVPQ+   R E   +M VQ N+ TP+    ++   QD LT+   +T
Sbjct: 490 SPYNADFDGDEMNLHVPQSLGTRAEVEEIMMVQRNILTPQANRPVMGIIQDTLTAIRKLT 549

Query: 417 RKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANM-RVYV 475
            +DTF ++     +  +  +   R  LP PA+LKP ELWTGKQL S+++    N+ + Y 
Sbjct: 550 FRDTFIEKDDMMQLLMWYPNWDGR--LPEPALLKPKELWTGKQLVSMVLPDKINLVQFYS 607

Query: 476 NLTVKEKTYSNK---LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKD 532
                  T  +K   +I  E    I       +D  V  +N +LISG L K T+G    +
Sbjct: 608 QHDGSVDTPRDKDGNVIEAEDATHI-----TQHDTRVLIQNGKLISGILCKKTMG-ARAN 661

Query: 533 GLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENY 592
           G+  V++ ++G          +  +   W+  HG SIGI D        D      +   
Sbjct: 662 GVIHVIMMEHGHERARQFYGNVQTVVNNWLLIHGHSIGIGDAIADTHTYDTIDSEKAAAN 721

Query: 593 EVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMS 652
           E  N  I++    K++  PG    QT EA +   LN++ +  G A   +L   N+   MS
Sbjct: 722 EKVNELIQDAQLDKIEPSPGHTIRQTFEAKVNKNLNQVIKKTGGAVQKALSEHNNFKAMS 781

Query: 653 QCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSG 712
             GSKGS INISQ++ACV QQ+V G+R P GF  RSLPHF +    P A GFV +S+  G
Sbjct: 782 TAGSKGSEINISQIIACVSQQNVEGKRIPFGFRHRSLPHFVKDDYGPHACGFVFSSYIQG 841

Query: 713 LSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFL 772
           L   EFFFH MGGREGL+DTAVKTA+TGY+ RRL+K++E L ++YD +VRN+ G +VQ  
Sbjct: 842 LEPHEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKSMEGLRLEYDGTVRNSTGDLVQLH 901

Query: 773 YGDDGMDPANMEGKSGEPLNFD------RLLMKVKATCPPAGQRYLSPQQVSEIVEKQLA 826
           YG+DGMD A +E +S   L  D      R L  V  T   + +R+L+   V ++   Q A
Sbjct: 902 YGEDGMDGALVESQSLT-LKLDNATFEKRFLTNVANTR--SLRRFLTEDVVDDLAASQDA 958

Query: 827 A 827
           A
Sbjct: 959 A 959



 Score =  170 bits (430), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 126/417 (30%), Positives = 198/417 (47%), Gaps = 56/417 (13%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T +  E  +     R+   + +    +G + AQ +GEP TQMTL TFH AG ++ N+T 
Sbjct: 1070 LTREAFEWVLGEIEHRFAQSQAQPAEMVGPLAAQCLGEPTTQMTLNTFHQAGYSAKNVTL 1129

Query: 941  GVPRIKEIINGAKRISTP--IITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN ++   TP  ++  + + +DNE  A      +E T L  V K   I    
Sbjct: 1130 GVPRLKEIINVSRNPKTPSMLLFLDEQASDNETLALRCLYDLEYTPLSAVVKKSSICFDP 1189

Query: 999  RLASIVIALDMETIQDAH--------------------------LCINADIVKESI---- 1028
               + +I  D+E +QD                              ++ D+++E I    
Sbjct: 1190 DERNTIIQEDLEFLQDYFDDPDYHPEDLSPWVLRLELDSVQMTLRDVSCDMIEEKIESYL 1249

Query: 1029 ------VQTPKIKLKQQHIKVL------DFRKLEIFPPVDKSKIHFELYSLKNVLPMVIV 1076
                  V T     KQ+ +++       +   +E F   D+     E   LKN+     +
Sbjct: 1250 ESTVKCVYTTNAAAKQKVMRIRLTKVEENEEGMEDFMSADRLLRLVEERLLKNLH----L 1305

Query: 1077 KGIKTVERVVIA-----EKEKEKRKVKENG---EKKKYRLLVEGTGLQAVMGAEGIDGCK 1128
            KG++ + R  I+     E EK KR   ENG    K  + +  +G+ L  V+    +D   
Sbjct: 1306 KGVEEISRGYISKPETKEPEKLKRYYDENGTFQSKSGWIIETDGSSLAKVLSHPHVDPEN 1365

Query: 1129 TKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITR 1188
            + +N I EV Q  GIEAAR  + +EI   + + G +++ RH+ LL D+MT +G ++ ITR
Sbjct: 1366 SSTNDIVEVFQVFGIEAARKAVENEIINVVTSGGANVNYRHLSLLCDIMTNKGSLMAITR 1425

Query: 1189 FGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             GI +     LM ASFE+T D L  A+ +   D + GVSE I++G   P+GTG   +
Sbjct: 1426 HGINRQSTGALMRASFEETVDILLEAAAHAETDTMRGVSENIMLGNLAPVGTGYFDL 1482


>gi|126178251|ref|YP_001046216.1| DNA-directed RNA polymerase subunit A' [Methanoculleus marisnigri
           JR1]
 gi|126178264|ref|YP_001046229.1| DNA-directed RNA polymerase subunit A' [Methanoculleus marisnigri
           JR1]
 gi|125861045|gb|ABN56234.1| DNA-directed RNA polymerase, subunit A' [Methanoculleus marisnigri
           JR1]
 gi|125861058|gb|ABN56247.1| DNA-directed RNA polymerase, subunit A' [Methanoculleus marisnigri
           JR1]
          Length = 882

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 283/707 (40%), Positives = 408/707 (57%), Gaps = 30/707 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++    +R+ D D   L ++    RPE  I+T + VPP+ +RPS+I++  Q +E+D
Sbjct: 172 LTPADIRARLERIPDDDLRALGVNPDVARPEWTILTVLPVPPVTMRPSIILENGQRSEDD 231

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N   ++              WE LQ  V  Y++++V G P +  +  RP
Sbjct: 232 LTHKLVDIIRINQRFKENQDAGAPQLIIEDLWELLQYHVTTYLDNEVAGCPPARHRSGRP 291

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDPNL I EV IP+ +A  +T P RV+
Sbjct: 292 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSIGEVGIPLAIANEMTLPIRVT 351

Query: 262 DHNIEKLRQCIQNGPDKYP-----GARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
             NIE++RQ + NGP++       GA     PD     L       +A  ++ G  V+R 
Sbjct: 352 TFNIEEMRQYVLNGPERPTIRSPCGANYAIRPDNRRMRLSDANLETVAEMIEPGWTVERQ 411

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           L+D D+VLFNRQPSLHRMSIM HR  +M  +T R N +VC PYNADFDGDEMN+H+PQTE
Sbjct: 412 LKDNDIVLFNRQPSLHRMSIMAHRVVVMDGKTFRLNPAVCPPYNADFDGDEMNLHIPQTE 471

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           EAR EA +L+ V +N+ +P+ G  ++    D ++  FL+T     + +        Y+  
Sbjct: 472 EARAEAEILVSVSSNILSPRTGGPIIGGIHDHISGIFLLTHTVRHFSKEE----VLYLTQ 527

Query: 437 GMDRVDLPTPAILKPV--ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
            +    LP P  +      LWT KQ+FS+++  + NM    +     +T   +       
Sbjct: 528 HLPVEHLPEPDRMDENGNPLWTNKQVFSLVLPDNLNMVFQASSCQNCETCKRE------- 580

Query: 495 EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                  MC ND FV   N  LI+G + K  +G  +   L+ ++ R +G    +  ++ +
Sbjct: 581 -------MCENDAFVRVVNGNLITGTIDKKGIGAFDGQILHRII-RQHGMKRAARFIDDV 632

Query: 555 AKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
            KLS R I   GFS GIDD    +    +  +++       + +IK YNEG+L+  PG  
Sbjct: 633 TKLSIRGIMLEGFSFGIDDEDLTRTEYGQIDEVLDGAISDVDRRIKIYNEGQLEPMPGRT 692

Query: 615 AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
             +TLE  I  +L + R+  G+     L   NS ++M+  G++GS +N++QM  C+GQQS
Sbjct: 693 LEETLEMQIMQVLGKARDRTGEIAGRHLGMDNSAVVMAVSGARGSMLNLTQMAGCLGQQS 752

Query: 675 VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
           V G R   G+ DR+LPHF R  +   A GF+ NS+ SGLS TEFFFH +GGREGLVDTAV
Sbjct: 753 VRGERIMRGYEDRTLPHFRRNERGAEAHGFITNSYKSGLSPTEFFFHAIGGREGLVDTAV 812

Query: 735 KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPA 781
           +T+ +GY+ RR+I AL+DL + YD +VR  GG I+QF YG+DG DP 
Sbjct: 813 RTSQSGYLQRRMINALQDLKVAYDGTVRTTGGRIIQFRYGEDGTDPG 859


>gi|397779348|ref|YP_006543821.1| DNA-directed RNA polymerase subunit A' [Methanoculleus bourgensis
           MS2]
 gi|396937850|emb|CCJ35105.1| DNA-directed RNA polymerase subunit A' [Methanoculleus bourgensis
           MS2]
          Length = 882

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 285/707 (40%), Positives = 413/707 (58%), Gaps = 30/707 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++    +++ D D  ++ ++    RPE  I+T + VPP+ +RPS+I++  Q +E+D
Sbjct: 172 LTPADIRARLEKIPDDDLRLMGVNPDVARPEWTILTVLPVPPVTMRPSIILENGQRSEDD 231

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N   ++              WE LQ  V  Y++++V G P +  +  RP
Sbjct: 232 LTHKLVDIIRINQRFKENQDAGAPQLIIEDLWELLQYHVTTYLDNEVAGCPPARHRSGRP 291

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDPNL I EV IP+ +A  +T P R++
Sbjct: 292 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSIGEVGIPLAIANEMTVPVRIT 351

Query: 262 DHNIEKLRQCIQNGPDKYP-----GARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
             NIE++RQ + NGP +       GA  +  PD     L       +   L+ G  V+R 
Sbjct: 352 PFNIEEMRQYVLNGPVRPTIRSPCGANYVIRPDNRRMRLSDVNLETVMEMLEPGWTVERQ 411

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           L+DGD+VLFNRQPSLHRMSIM HR  +M  +T R N +VC PYNADFDGDEMN+H+PQTE
Sbjct: 412 LKDGDIVLFNRQPSLHRMSIMAHRIVVMDGKTFRLNPAVCPPYNADFDGDEMNLHIPQTE 471

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           EAR EA +L+ VQ N+ +P+ G  ++    D ++  FL+T +   + +        Y+  
Sbjct: 472 EARAEAEILVSVQANILSPRTGGPIIGGIHDHISGIFLLTHRMRHFRKED----VLYLTQ 527

Query: 437 GMDRVDLPTPAILKPVE--LWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
            +D   LP P  +      LWT KQ+FS+++    NM        +  +  N        
Sbjct: 528 HLDLDHLPEPDSVDSNGNLLWTNKQVFSLILPGELNM------IFRASSCQNC------- 574

Query: 495 EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
           E  R E MC ND +V   + +L++G + K  +G  +   L+ ++ R YG    +  ++ +
Sbjct: 575 ETCRRE-MCENDAYVRIIDGQLVTGTIDKKAIGAFDGQILHRII-RQYGMKRAARFIDDV 632

Query: 555 AKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
            KLS R I   GFS GIDD    K    +  ++++        +IK + EG+L+  PG  
Sbjct: 633 TKLSIRGIMLQGFSFGIDDEDLTKTEYGQIDEVLNGAVSDVERRIKIFKEGQLEPMPGRT 692

Query: 615 AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
             +TLE  I  +L + R+  G+     L   NS ++M+  G++GS +N++QM  C+GQQS
Sbjct: 693 LEETLEMQIMQVLGKARDRTGEIAGRHLGMDNSAVVMAVSGARGSMLNLTQMAGCLGQQS 752

Query: 675 VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
           V G R   G+ DR+LPHF R      A GF+ANS+ SGLS TEFFFH +GGREGLVDTAV
Sbjct: 753 VRGERIMRGYEDRTLPHFRRNELGAEAHGFIANSYKSGLSPTEFFFHAIGGREGLVDTAV 812

Query: 735 KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPA 781
           +T+ +GY+ RR+I AL+DL + YD +VR  GG I+QF YG+DG DPA
Sbjct: 813 RTSQSGYLQRRMINALQDLKVAYDGTVRTTGGRIIQFRYGEDGTDPA 859


>gi|73671120|ref|YP_307135.1| DNA-directed RNA polymerase subunit A' [Methanosarcina barkeri str.
           Fusaro]
 gi|72398282|gb|AAZ72555.1| DNA-directed RNA polymerase, subunit A' [Methanosarcina barkeri
           str. Fusaro]
          Length = 880

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 276/703 (39%), Positives = 417/703 (59%), Gaps = 27/703 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  +   F+ + D D  V+ +   + RPE +I+T + VPP+ +RPS+ ++  Q +E+D
Sbjct: 175 LTPTEIRDRFENIPDDDIRVIGMDPKNARPEWMILTVLPVPPVTVRPSITLESGQRSEDD 234

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N   Q+              WE LQ  V  + ++ V G+P +  +  RP
Sbjct: 235 LTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQYHVTTFFDNSVSGIPPARHRSGRP 294

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDPNL I EV +P+ +ARILT P  V+
Sbjct: 295 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSINEVGVPMPIARILTMPSVVT 354

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
             NIE+L+  ++NG D +PGA  +  PDG    +    ++ LA +L+ G  V+R L+DGD
Sbjct: 355 PRNIEQLKIYVRNGEDIHPGANYVLRPDGRRIKVTNVNKDDLAEKLEFGWTVERQLKDGD 414

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +VLFNRQPSLH+MSIM H  +++P +T R N +VC PYNADFDGDEMNMH  QTEE+R E
Sbjct: 415 IVLFNRQPSLHKMSIMAHSVKVLPNKTFRLNPAVCPPYNADFDGDEMNMHALQTEESRAE 474

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR-KDTFYDRAAFSLMCCYMGDGMDR 440
           A +LM VQ N+ +P+ G  ++    D ++  FL+TR ++  Y   A+ ++        + 
Sbjct: 475 AKILMQVQENILSPRFGGPIIGGIHDHISGLFLLTRFENHIYADDAYDML-----RKSNI 529

Query: 441 VDLPTPAILKP--VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            +LP+PA   P     WTGKQ+FS ++  + N +    +     ++ +   + E      
Sbjct: 530 RELPSPAGYDPDGKPYWTGKQIFSQILPKNLNTQFAAQVC----SHCDICKKEE------ 579

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
               CPND +V  R+ ELI G + +A +G   K  +   ++++ G    +  ++ +  L+
Sbjct: 580 ----CPNDAYVVIRDGELIKGTIDEAAIG-AFKGKVQDRIIKEIGPEVGARFIDNMTMLA 634

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
            R I   G S GI D    KE   +  +++ +  +     IK Y   +L+  PG    +T
Sbjct: 635 VRAIMRTGLSFGIADEDIPKEARIQINEVLGKAEDAVQNLIKSYQNKELEPLPGRTLDET 694

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
           +E  I   L + R++ G      +   NS +IM++ G++GS +N++QM ACVGQQ+V G 
Sbjct: 695 IEMSIMQKLGKARDETGNIADSHIGLENSAVIMARSGARGSILNLTQMAACVGQQAVRGE 754

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R   G+  R+LPHF +      A GFV  S+ SGL+ TE+FFH +GGREGLVDTAV+T+ 
Sbjct: 755 RIRRGYAGRTLPHFQKGDLGSDAHGFVKASYKSGLNPTEYFFHAIGGREGLVDTAVRTSQ 814

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPA 781
           +GY+ RRL+ AL+DL +QYD +VR+  G +VQF +G+DG++P 
Sbjct: 815 SGYLQRRLVNALQDLEVQYDLTVRDTRGVLVQFKFGEDGINPT 857


>gi|19112465|ref|NP_595673.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe
           972h-]
 gi|548817|sp|P36594.1|RPB1_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb1;
           Short=RNA polymerase II subunit 1; Short=RNA polymerase
           II subunit B1; AltName: Full=DNA-directed RNA polymerase
           III largest subunit
 gi|256599715|pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|256599727|pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|5055|emb|CAA39916.1| RNA polymerase II large subunit [Schizosaccharomyces pombe]
 gi|6018696|emb|CAB57941.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe]
          Length = 1752

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 292/721 (40%), Positives = 433/721 (60%), Gaps = 34/721 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P+ V  +F  ++  D   L L+E   RP+ +IIT + VPP ++RPS+ +DG+   E+
Sbjct: 207 LLSPLEVHTIFTHISSEDLAHLGLNEQYARPDWMIITVLPVPPPSVRPSISVDGTSRGED 266

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VAR 200
           D+T +L  II+ NA++++   E   A       + LQ  VA Y+++++ G P ++Q   R
Sbjct: 267 DLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQLLQFHVATYMDNEIAGQPQALQKSGR 326

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + E+ +P  +A+ LTYPE V
Sbjct: 327 PLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETV 386

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           + +NI +L++ ++NGPD++PGA+ I   D   R+     +    + L+ G  V+RH+ DG
Sbjct: 387 TPYNIYQLQELVRNGPDEHPGAKYI-IRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDG 445

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           DVV+FNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMNMHVPQ+EE R 
Sbjct: 446 DVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRA 505

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           E   +  V   + +P++ + ++   QD L      + +D F  R A   +  ++ D  D 
Sbjct: 506 EIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLWVPD-WDG 564

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           + LP P ILKP  LWTGKQ+ S++I    N                 LIR +  + +   
Sbjct: 565 I-LPPPVILKPKVLWTGKQILSLIIPKGIN-----------------LIRDDDKQSLS-- 604

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
              P D  +   N E+I G + K T+G  ++ GL   + ++ G     G  N + ++   
Sbjct: 605 --NPTDSGMLIENGEIIYGVVDKKTVG-ASQGGLVHTIWKEKGPEICKGFFNGIQRVVNY 661

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           W+ ++GFSIGI D     +   +  + + E        I++    +L+ +PG    ++ E
Sbjct: 662 WLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFE 721

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
           A ++ ILN+ R++AG++   SL   N+   M   GSKGS INISQM ACVGQQ V G+R 
Sbjct: 722 AKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRI 781

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
           P GF  R+LPHFP+    P ++GF+ NS+  GL+  EFFFH M GREGL+DTAVKTA+TG
Sbjct: 782 PFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 841

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           Y+ RRL+KA+ED+ ++YD +VRNA G I+QF YG+DG+D   +E +      FD L +  
Sbjct: 842 YIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQV-----FDSLRLST 896

Query: 801 K 801
           K
Sbjct: 897 K 897



 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/399 (32%), Positives = 205/399 (51%), Gaps = 51/399 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R++   V  G  +G + AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEI+N AK 
Sbjct: 1054 ARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKN 1113

Query: 955  ISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T  L      N + A+ V+ +IE T L  V  + +I         VI  D + +
Sbjct: 1114 IKTPSLTIYLMPWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFV 1173

Query: 1013 QDAHLCINADIVKESIV-QTPKI-KLKQQHIKVLDFRKLEIFPPVDKSKIHFE-----LY 1065
            + A   I  + V+E++  Q+P + +L+    K+LD +KL +     K    FE     ++
Sbjct: 1174 E-AFFAIPDEEVEENLYKQSPWLLRLELDRAKMLD-KKLSMSDVAGKIAESFERDLFTIW 1231

Query: 1066 SLKNVLPMVI-------------------------------------VKGIKTVERVVIA 1088
            S  N   ++I                                     ++G+  + RV + 
Sbjct: 1232 SEDNADKLIIRCRIIRDDDRKAEDDDNMIEEDVFLKTIEGHMLESISLRGVPNITRVYMM 1291

Query: 1089 EKEKEKRKVKENGEKK--KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAA 1146
            E  K  R++++   ++  ++ L  +G  L   M  EG+D  +T SN   E+ Q LGIEA 
Sbjct: 1292 E-HKIVRQIEDGTFERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEAT 1350

Query: 1147 RICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEK 1206
            R  ++ E+   ++  G  ++ RH+ LL D+MT RG ++ ITR GI + +   LM  SFE+
Sbjct: 1351 RSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEE 1410

Query: 1207 TADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            T + L +A+ +G  D  +G+SE I++G   P+GTG   I
Sbjct: 1411 TVEILMDAAASGEKDDCKGISENIMLGQLAPMGTGAFDI 1449


>gi|120561213|gb|ABM26992.1| RNA polymerase II largest subunit, partial [Capniomyces stellatus]
          Length = 1024

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 287/713 (40%), Positives = 428/713 (60%), Gaps = 40/713 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   VL + K+++  D   + L+    RP+ L+IT + V P+++RPS+ +D ++ +E+D
Sbjct: 141 LSVTQVLQVLKKISREDAVAMGLNVEFARPDWLVITVMPVAPMSVRPSIQVDATRQSEDD 200

Query: 143 ITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ 197
           +T +L  I++ NA ++   +E         F+SL     LQ  VA ++N+++ G+P ++Q
Sbjct: 201 LTYKLNDILKANARVRSCELEGAPLHIIEEFESL-----LQFHVATFMNNELSGLPQALQ 255

Query: 198 VA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTY 256
            + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPN++I +V +P  +A+ LTY
Sbjct: 256 KSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVIAGDPNIEIDQVGVPRSIAKNLTY 315

Query: 257 PERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
           PE V+ +NI+KL++ +QNGP+++PGA+ +   D   R+     +    + L+ G  V+R+
Sbjct: 316 PEVVTPYNIDKLQEMVQNGPNEHPGAKYV-IRDSGERIDLRYSKRGGDIPLQIGYRVERN 374

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           L D DVV+FNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+H+PQ+E
Sbjct: 375 LMDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHLPQSE 434

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYM 434
           E R E   L  V   + +P+  + ++   QD L +  + T++DT    D     L+    
Sbjct: 435 ETRAEIRELCMVPKQIVSPQANKPVMGIVQDTLCALLMFTKRDTLMRLDMVMSLLLKVPG 494

Query: 435 GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
            DG+    +PTP ILKP  LW+GKQ+FS++I    N   +               +   D
Sbjct: 495 WDGL----IPTPCILKPQPLWSGKQIFSLIIPKGINCYTF--------------FKDHPD 536

Query: 495 EEIRIETMC-PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
            E      C P D  V   N EL+SG + K T+G   + G+  V+  + G+ A       
Sbjct: 537 NET---AWCSPGDSRVVIENGELLSGIICKQTVG-AVRGGIVHVIFNELGSEAAKIFFGG 592

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
             ++   W+ ++GFSIGI D        +  G +I+E+Y   +  IK+  E +L   PG 
Sbjct: 593 TQRVVNLWMLSNGFSIGIGDTIADDSAMESVGNIITESYMRVDEMIKDTIEDRLDCLPGM 652

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              +T E+     LNR R+ AGK+    L   N+   M   GSKGS IN+SQM A VGQQ
Sbjct: 653 TLKETFESGTNLELNRARDLAGKSVQTRLKECNNVRKMVVSGSKGSYINVSQMTAAVGQQ 712

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
           +V GRR P GF +R+LPHF +    P ++GFV NS+  GL+  EF+FH MGGREGL+DTA
Sbjct: 713 NVEGRRIPFGFRNRTLPHFTKDDYSPQSRGFVENSYLRGLTPQEFYFHAMGGREGLIDTA 772

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           VKTA+TGY+ RRL+KALED+ + YD +VRN+ G I++F YG DGMD   +E +
Sbjct: 773 VKTAETGYIQRRLVKALEDIMVHYDGTVRNSLGSIIEFAYGHDGMDAGYLENQ 825


>gi|392574154|gb|EIW67291.1| hypothetical protein TREMEDRAFT_40446 [Tremella mesenterica DSM
           1558]
          Length = 1808

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 298/728 (40%), Positives = 432/728 (59%), Gaps = 37/728 (5%)

Query: 68  AITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPP 124
           + T   ES + + + +  ++P  +  + +++   D  V+ L+    RPE +I+T + VPP
Sbjct: 202 STTDKDESGSELEIRS--VSPGEIYNVLRKIPAEDLHVMGLNIDYARPEWMILTVMPVPP 259

Query: 125 IAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAG--WETLQVEV 181
            A+RPS+ +DG +  +E+D+T +L +I++T+A++++  +EA     S+    ++ LQ  V
Sbjct: 260 AAVRPSISIDGGAMRSEDDLTYKLAQILKTSATVRR--LEAEGVPPSVVDEQFDLLQFHV 317

Query: 182 AQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLK 240
           A Y+++++ G+P  MQ   RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL+
Sbjct: 318 ATYMDNEIAGLPQDMQKSGRPIKAIRARLKGKEGRMRGNLMGKRVDFSARTVITGDPNLQ 377

Query: 241 ITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFR 300
           + +V +P  +A  LTYPERV+ +NI  L+  + NGP  YPGAR   Y   T   +  K+R
Sbjct: 378 LDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPSTYPGARY--YVKDTGERIDLKYR 435

Query: 301 NQ-LAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
                + L+ G IV+RHL+DGD VLFNRQPSLH+MS+MCHR ++M + T R N SV +PY
Sbjct: 436 KSGEPISLQFGWIVERHLKDGDFVLFNRQPSLHKMSMMCHRVKLMNYSTFRLNLSVTSPY 495

Query: 360 NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
           NADFDGDEMN+HVPQ+EE R E   +  V   + +P+  + ++   QD L      T +D
Sbjct: 496 NADFDGDEMNLHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRD 555

Query: 420 TFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTV 479
            + D      +  ++  G D   +PTPAILKP  +WTGKQL S+ I P       +N+T 
Sbjct: 556 NYCDWKQVQNILLWL-PGWDGT-IPTPAILKPKPMWTGKQLMSMTI-PKG-----INITF 607

Query: 480 KEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLL 539
           K     + +  T  DE + I+            N E+I G + K   G+ N +GL  V+ 
Sbjct: 608 KNNEKPSPIDIT--DENVLID------------NGEIIHGTIVKNMAGSAN-NGLVHVIF 652

Query: 540 RDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKI 599
           R+ G  A     +    +   W+ ++GFS+GI D              + E  E     I
Sbjct: 653 RELGHVAARDFFSACQMMVNFWLLHYGFSVGIGDTIVDTATMAGITNRMVEAKEAVQRLI 712

Query: 600 KEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGS 659
            E    +++ KPG    +TLEA I   LN+ R+  GK    +L   N+   M   G+KGS
Sbjct: 713 AEAEANRMKPKPGMTIRETLEAGIATELNKARDWTGKTAQDNLKEDNNVKQMVVSGAKGS 772

Query: 660 PINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFF 719
            INISQM   VGQQ V G+R   GF  R+LPHFP+    P ++GFV NS+  GL+  EF+
Sbjct: 773 FINISQMTGVVGQQFVEGKRINFGFKHRTLPHFPKDDYGPESRGFVENSYLRGLTPQEFW 832

Query: 720 FHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           FH MGGREGL+DTAVKTA+TGY+ RRL+KA+EDL + YD +VRN+ G +VQFLYG+DGMD
Sbjct: 833 FHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDLKVAYDGTVRNSTGDVVQFLYGEDGMD 892

Query: 780 PANMEGKS 787
            A ME +S
Sbjct: 893 GAAMEKQS 900



 Score =  186 bits (472), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 195/379 (51%), Gaps = 42/379 (11%)

Query: 908  IGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--E 965
            +G + AQSIGEP TQMTL TFH+AGVAS ++T GVPR+KEIIN A  I TP +   L  E
Sbjct: 1083 VGTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPRLKEIINVAVNIRTPALNVYLDRE 1142

Query: 966  CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVK 1025
             +  E AA  +  ++  T L  +  S++I    +L S  I  D + + DA   I  + +K
Sbjct: 1143 YSQTEKAAHQIMRKLTYTRLRDITASVEIFYDPKLDSTDIEEDKDFV-DAFFAIPDEDIK 1201

Query: 1026 ESIVQTPKIKLKQQHIKVLD--FRKLEIFPPV------DKSKIHFELYSLKNVLPMVIVK 1077
                    ++L+    KVL+  +   ++   +      D   IH E  + K ++ + +V 
Sbjct: 1202 LEQHSPWLLRLELDRAKVLEGGYEMSQVVNAIVDTVGKDVFVIHSEDNAEKLIIRIRVVS 1261

Query: 1078 ------------------------------GIKTVERVVIAE-KEKEKRKVKENGEKKKY 1106
                                          GI  ++RV I+E K+    +  E  +++++
Sbjct: 1262 DEKEDDQLIGEEDIFLKKIEGTLLDHVELGGITGIQRVFISEGKQTVLSQQGEYDQEREW 1321

Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
             L  +G  L+ V+  +G+D  +T SN+ +EV QTLGIEA R  +  E+N  ++  G  ++
Sbjct: 1322 FLETDGINLKEVLAVDGVDAVRTYSNNCYEVYQTLGIEAGRNALFKELNGVIEMGGSYVN 1381

Query: 1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
             RH+ LL DLM  +G+++ ITR GI + D   L  ASFE+T + L  A+  G  D   GV
Sbjct: 1382 YRHLALLCDLMCSKGQLMSITRHGINRTDAGALSRASFEETVEILLEAAAVGDVDDCHGV 1441

Query: 1227 SECIIMGIPMPLGTGILKI 1245
            +E +++G   P+GTG   +
Sbjct: 1442 AENVLLGQIAPMGTGAFDV 1460


>gi|168920044|gb|AAV54050.2| RNA polymerase II largest subunit [Boletellus projectellus]
          Length = 997

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 304/759 (40%), Positives = 442/759 (58%), Gaps = 52/759 (6%)

Query: 35  CGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESK--AAVNVATYILNPVNVL 92
           CG+I  +++K               E L+ F     H  E +   ++     +  P  V 
Sbjct: 79  CGHIQPLIRK---------------EGLKLFVQYKRHKDEDEDLKSLQPDKRLFTPSEVY 123

Query: 93  FLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLK 148
             FK+M+D+D  ++ LS+   RPE +I+T + VPP  +RPS+ +DG +  +E+D+T +L 
Sbjct: 124 TTFKKMSDSDLHLIGLSDEYARPEWMILTVMPVPPPPVRPSIAVDGGAMRSEDDLTYKLG 183

Query: 149 RIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQ 207
            II+ +A++++   E   A       + LQ  VA Y+++D+ G+P ++Q + RP+     
Sbjct: 184 DIIKASANVRRCEQEGAPAHVITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRA 243

Query: 208 RLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEK 267
           RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ EV +P  +A  LTYPERV+ +NI  
Sbjct: 244 RLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAY 303

Query: 268 LRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNR 327
           L++ ++NGP  YPGAR +    G    L  ++  +    L+ G IV+RHL+DGD VLFNR
Sbjct: 304 LQELVRNGPSTYPGARYVVRDTGERIDL--RYNKRADAFLQYGWIVERHLKDGDFVLFNR 361

Query: 328 QPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMG 387
           QPSLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMNMH+PQ+EE R E   +  
Sbjct: 362 QPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAW 421

Query: 388 VQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLPT 445
           V   + +P+  + ++   QD L      T +DTF D      +  ++   DG    ++PT
Sbjct: 422 VPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWQQVQNILLWVPEWDG----NVPT 477

Query: 446 PAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 505
           PAI+KP  LWTGKQ+ S++I    N+         E   SN L                +
Sbjct: 478 PAIIKPKPLWTGKQIISMVIPRGINIH-----RAPEPKSSNPLF---------------D 517

Query: 506 DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
           DG +   N E++ G + K T+G   + GL  V+ R+ G  AT      +  +   W+ ++
Sbjct: 518 DGMM-VDNGEILFGIVDKKTVG-ATQGGLIHVVFREKGPEATRSVFTGIQMVVNFWLFHN 575

Query: 566 GFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITD 625
           GFSIGI D      + +   + I +  +     I++    +L+  PG    ++ E+ +  
Sbjct: 576 GFSIGIGDTIAGPNVMEFITRRIKDKKQQVAEIIEDAYNDRLKPMPGMTIRESFESKVER 635

Query: 626 ILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFI 685
            LNR R+D+G+    +L   N+   M   GSKGS INISQM  CVGQQSV GRR P GF 
Sbjct: 636 ELNRARDDSGQYAQKNLKEDNNVKQMVTAGSKGSYINISQMSVCVGQQSVEGRRIPFGFR 695

Query: 686 DRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRR 745
            R+LPHF +    P A+GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+TGY+ RR
Sbjct: 696 HRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRR 755

Query: 746 LIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           L+KALED+ + YD +VRN+ G +VQF+YG+DGMD A +E
Sbjct: 756 LVKALEDVMVCYDGTVRNSLGDLVQFIYGEDGMDGAFIE 794


>gi|325183802|emb|CCA18261.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 1819

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 298/766 (38%), Positives = 433/766 (56%), Gaps = 51/766 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L    VL +FK ++D DC  L L  R   P+ LI+T + VPP  +RPSV +DG    E+D
Sbjct: 208 LPAAKVLSIFKNISDVDCHSLGLDSRWARPDWLILTLMPVPPPHVRPSVALDGMARGEDD 267

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARP 201
           +T  L  I++ N +L   + +   +       + LQ  +A +IN++  G+P + Q   +P
Sbjct: 268 LTHNLASIVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFINNEQPGLPQAQQRSGKP 327

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRL+GK+GR RGNL GKRV+++ RTVI+ DPNL+I +V +P+ +A  LT PERV+
Sbjct: 328 LKTLRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLEIDQVGVPLSIAMNLTVPERVT 387

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
             N+  + Q I NGP ++PGA+ I   DG  R+     +N+  + LK G IV+RHL D D
Sbjct: 388 PFNMAAMHQLISNGPLEHPGAKYIIREDGN-RIDLRYIKNKSDLALKCGWIVERHLRDED 446

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +VLFNRQPSLH+MSIM HR ++  W T R N SV +PYNADFDGDEMN+HVPQ+  AR E
Sbjct: 447 LVLFNRQPSLHKMSIMSHRVKVFHWSTFRLNLSVTSPYNADFDGDEMNLHVPQSLTARAE 506

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMD 439
           A  LM V   + TP++   ++   QD L      T++D F ++      LM  +  DG  
Sbjct: 507 AQELMMVHKVIITPQSNRPVMGIVQDSLLGVQKFTKRDIFIEKDVVMNLLMWVFNWDGR- 565

Query: 440 RVDLPTPAILKPVE--------LWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRT 491
              +PTPAIL P +        +WTGKQ+FS +I         +N T    T+S+K    
Sbjct: 566 ---IPTPAILVPKKGEIGKYRPIWTGKQMFSQVIPD-------INFTGFSSTHSSKE--- 612

Query: 492 EGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCM 551
                     + P D  V  +  EL++G + K T+G+ +  GL    + + G       +
Sbjct: 613 ------SFAKLSPIDSRVIVQRGELLAGIIDKKTIGS-SAGGLIHTTMLEKGPEEAKYFL 665

Query: 552 NRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
             + KL   W+    F++G+ D             +I++     +  ++   +GKL+ +P
Sbjct: 666 GAVQKLVNNWLVGRSFTVGVSDAIADVSTLKTIVDIITQAKVQVHDLVQRGQKGKLETQP 725

Query: 612 GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
           G    ++ E ++  +LN  R+ AG+   GSL   N+       GSKGS INISQ++ACVG
Sbjct: 726 GRTMVESFEQLVNKVLNTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVG 785

Query: 672 QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
           QQ+V G+R P GF  R+LPH+ +    P ++GFV NS+  GL+  EFFFH MGGREGL+D
Sbjct: 786 QQNVEGKRIPYGFQHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLID 845

Query: 732 TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL 791
           TAVKTA+TGY+ RRL+KA+E +  +YD +VRNA G I+QFLYG+DGMD   +E +  E  
Sbjct: 846 TAVKTAETGYIQRRLVKAMESVMARYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESH 905

Query: 792 NFDRL-------------LMKVKATCPPAGQRYLSPQQVSEIVEKQ 824
             +++             L+     CP   Q +L P+ + +I   Q
Sbjct: 906 RLNKVEFEQKYMFDTSSELLGCVPKCP--DQLFLDPEIIKDIRTNQ 949



 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 128/414 (30%), Positives = 206/414 (49%), Gaps = 53/414 (12%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +TE   E  +    S++    V AG   G + AQSIGEP TQMTL TFH+AGV++ N+T 
Sbjct: 1069 LTETAFEWLLGEIESKFTSSLVSAGEMAGVVAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1128

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEI+N AK + TP +   L  +C  + + A+ ++ ++E T L  V  +  I    
Sbjct: 1129 GVPRLKEIMNIAKDVRTPSLQIFLTPDCAHDADKAKFIQSQLEYTTLADVTANTAIFYDP 1188

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTP---KIKLKQQHIKVLDFRKLEIFPPV 1055
               + +I  D E +   +   + D     + ++P   +I+L ++ +        EI   +
Sbjct: 1189 DPMNTIIEEDQEFVSTYYEMPDEDT---PVARSPWLLRIELNREMMADKKLTMSEIASQI 1245

Query: 1056 -----------------DKSKIHFELYS---------------------LKNV----LPM 1073
                             DK  +   + S                     LK V    L  
Sbjct: 1246 ESEYGQDLSCIFTDDNADKLVLRIRIVSDEEEKMQRTGESTVGQEDDTFLKRVEHNMLTQ 1305

Query: 1074 VIVKGIKTVERVVIAEKEKEKRKVKENGEK--KKYRLLVEGTGLQAVMGAEGIDGCKTKS 1131
            + ++G+++V++V I E  +      + G K   ++ L  +GT L  V+    +DG +T S
Sbjct: 1306 MKLRGVQSVKKVYIREG-RPTHWFDDVGFKMTTEWVLDTDGTNLLDVLCFPQVDGTRTIS 1364

Query: 1132 NHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGI 1191
            N I E+ Q LGIEA R  +++EI + +   G  ++ RH+  LAD+MTFRG ++ ITR GI
Sbjct: 1365 NDIVEIIQVLGIEAVRRALLNEIRQVISFDGAYVNYRHLACLADVMTFRGHLMAITRHGI 1424

Query: 1192 QKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             + D   L+  SFE+T + L +A++    D + GVSE +++G   PLGTGI  +
Sbjct: 1425 NRDDSGPLVRCSFEETVEILMDAAMFSEGDPLTGVSENVMLGQLAPLGTGITDL 1478


>gi|119643502|gb|ABL85573.1| RNA polymerase II largest subunit [Lecidea fuscoatra]
          Length = 1016

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 291/710 (40%), Positives = 423/710 (59%), Gaps = 42/710 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS--NE 140
           + P   L +F+ ++  D + + LS    RPE +IIT + VPP  +RPS+ +DG      E
Sbjct: 135 ITPQMALNVFRHISTGDIKTMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGMRGE 194

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA- 199
           +D+T +L  II+ N ++Q+   E + A         LQ  VA Y+++D+ G P ++Q + 
Sbjct: 195 DDLTYKLGDIIRANGNVQRCETEGSPAHIVTEFEHLLQFHVATYMDNDIAGQPQALQKSG 254

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYPE 
Sbjct: 255 RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPET 314

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NIEKL Q ++NGP+ +PGA+ +   D   R+     +    + L+ G  V+RH+ D
Sbjct: 315 VTPYNIEKLHQXVKNGPNDHPGAKYV-IRDSGERIDLRHHKRAGEISLQYGWKVERHIVD 373

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R
Sbjct: 374 GDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 433

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V  N+ +P+    L+   QD L   + + R+D F  +     +  ++ D  D
Sbjct: 434 AEINQLCMVPLNIVSPQRNGPLMGIVQDTLAGIYKMCRRDVFLTKEQVMNILLWVPD-WD 492

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
            V +P PAILKP   WTGKQ+ S+++ P  N+  + +                       
Sbjct: 493 GV-IPQPAILKPRPKWTGKQIISLVVPPGLNLTRFSS----------------------- 528

Query: 500 ETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
           E +CP ND  +     EL+ G   K ++G  +  G+  ++  + G  A +   N    + 
Sbjct: 529 EGLCPINDDGLMVSGGELMYGLFSKKSVGAAS-GGVIHIIFNEKGPEAATNFFNGAQTVV 587

Query: 559 ARWIGNHGFSIGIDDVQPK----KELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
             W+ ++GFSIGI D  P     K++ D   K  ++  E+     +   E +L+  PG +
Sbjct: 588 NHWLLHNGFSIGIGDTIPDRNTIKQIEDAVSKQKADVAEIT----RSATENELEPLPGVN 643

Query: 615 AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
             +T E+ ++  LN+ R+DAG     SL   N+ + M++ GSKGS INISQM A VGQQS
Sbjct: 644 VRETFESKVSKALNKARDDAGTVTEESLKDLNNAIQMARSGSKGSTINISQMTAVVGQQS 703

Query: 675 VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
           V G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAV
Sbjct: 704 VEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 763

Query: 735 KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           KTA+TGY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D  ++E
Sbjct: 764 KTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIE 813


>gi|427777531|gb|JAA54217.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
          Length = 1941

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 292/761 (38%), Positives = 447/761 (58%), Gaps = 28/761 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           V  + K +++ +C +L +  R   P+ +++T + VPP+A+RP+V+M GS  N++D+T +L
Sbjct: 218 VWEILKHVSEEECMILGMDPRYAKPDWMLVTVLPVPPLAVRPAVVMFGSARNQDDLTHKL 277

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             I++ N  L +      +A       + LQ  VA  +++++ G+P +MQ + RPL    
Sbjct: 278 ADIVKANNELLRNEASGAAAHIIAENIKMLQFHVATLVDNEMPGLPRAMQKSGRPLKSIK 337

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
           QRLK K+GR RGNL GKRV+++ RTVI+PDPNL+I EV +P  +A+ LT+PE V+  NI+
Sbjct: 338 QRLKSKEGRIRGNLMGKRVDFSARTVITPDPNLRINEVGVPRSIAQNLTFPEIVTPFNID 397

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLEDGDVVLF 325
           K+   ++ G ++YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ DGD+++F
Sbjct: 398 KMHDLVRRGNNQYPGAKYIIRDNGERIDL--RFHPKASDLHLQCGYRVERHVRDGDIIVF 455

Query: 326 NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
           NRQP+LH+MS+M H+ +++PW T R N SV  PYNADFDGDEMN+HVPQ+ E R E   L
Sbjct: 456 NRQPTLHKMSMMGHKIKVLPWSTFRMNLSVTTPYNADFDGDEMNLHVPQSLETRAEVEQL 515

Query: 386 MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DRAAFSLMCCYMGDGMDRVDL 443
             V   + TP++ + ++   QD LT+   +T++D F   D+    LM   + DG     +
Sbjct: 516 AMVPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDIFLEKDQMMTILMFLPIWDG----KM 571

Query: 444 PTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMC 503
           P PA+LKP  LWTGKQ+FS++I  +      VNL     T+ ++      +++   + + 
Sbjct: 572 PMPAVLKPKPLWTGKQIFSLIIPGN------VNLIRTHSTHPDE------EDDGPYKWIS 619

Query: 504 PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIG 563
           P D  V   + ELISG + K T+G  +   L  V+  + G          +  +   W+ 
Sbjct: 620 PGDTKVLIEHGELISGIVCKKTVG-ASSGSLMHVVFAELGHEVAGAFYGHIQTVVNAWLL 678

Query: 564 NHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAV 622
             G +IGI D +  K+   D K  +    ++V +V  K +N+ +L+  PG    QT E  
Sbjct: 679 LEGHTIGIGDTIADKQTFIDIKNTIEKAKHDVIDVIEKAHND-ELEPSPGNTLRQTFENQ 737

Query: 623 ITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPN 682
           +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++ACVGQQ+V G+R P 
Sbjct: 738 VNRILNDARDKTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPF 797

Query: 683 GFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYM 742
           GF  R+LPHF +    P ++GFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA+TGY+
Sbjct: 798 GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYI 857

Query: 743 SRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA 802
            RRLIKA+E + I YD +VRN+ G ++Q  YG+DG+D   +E +S   L       + K 
Sbjct: 858 QRRLIKAMESVMIAYDGTVRNSNGQVIQLRYGEDGLDGGTVEFQSMPTLKPSNKSFEKKF 917

Query: 803 TCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRK 843
                 +RYL      ++V + + +    S  E     L+K
Sbjct: 918 RFDACNERYLRKVFTEDVVRELMGSATAVSELEKEWERLKK 958



 Score =  172 bits (437), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 131/420 (31%), Positives = 202/420 (48%), Gaps = 61/420 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  +    +R+   + + G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T 
Sbjct: 1057 LSTESFEWLLGEIETRFHQSQGQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTL 1116

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENA--ARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN +K+  TP +T  L      +A  A+ V  R+E T L +V  +  I    
Sbjct: 1117 GVPRLKEIINISKKPKTPSLTVFLTGAAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDP 1176

Query: 999  RLASIVIA----------------------------LDMETIQDAHL------------- 1017
               + VIA                            LD + + D  L             
Sbjct: 1177 DPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRVELDRKRMTDKKLTMEQIAEKINAGF 1236

Query: 1018 -----CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NVL 1071
                 CI  D   E +V   +I +     K  D  +      VDK +    L  ++ N+L
Sbjct: 1237 GDDLNCIFNDDNAEKLVLRIRI-MNSDDGKFQDEEEQ-----VDKMEDDVFLRCIEANML 1290

Query: 1072 PMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGID 1125
              + ++GI+ + +V +     + +K   + E GE K   ++ L  +GT L  V+    +D
Sbjct: 1291 SDMTLQGIEAITKVYMHLPTTDNKKRIVLTETGEFKAIAEWLLETDGTSLMRVLSERDVD 1350

Query: 1126 GCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLG 1185
              +T SN I E+   LGIEA R  +  E+N  +   G  ++ RH+ LL D+MT +G ++ 
Sbjct: 1351 PVRTYSNDICEIFAVLGIEAVRKAVEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMA 1410

Query: 1186 ITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            ITR GI + D   LM  SFE+T D L +A+ +   D ++GVSE IIMG    +GTG   +
Sbjct: 1411 ITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDYLKGVSENIIMGQLARMGTGAFDL 1470


>gi|398398966|ref|XP_003852940.1| DNA-directed RNA polymerase II subunit RPB1 [Zymoseptoria tritici
           IPO323]
 gi|339472822|gb|EGP87916.1| hypothetical protein MYCGRDRAFT_99873 [Zymoseptoria tritici IPO323]
          Length = 1773

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 281/731 (38%), Positives = 430/731 (58%), Gaps = 37/731 (5%)

Query: 66  ASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAV 122
           ++ +  +++      V    + P   L LFK++ + D   L L+    RPE +I+T + V
Sbjct: 192 STKVAKSEDGNEEGGVEKKTITPQVALDLFKKLREEDLHRLGLNVDYARPEWMIMTVLPV 251

Query: 123 PPIAIRPSVIMDGSQS---NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQV 179
           PP A+RPS+ +DG+     +E+D+T +L  II+ N+++++   E   A      +  LQ 
Sbjct: 252 PPPAVRPSISVDGTSQGMRSEDDLTYKLSDIIRANSNVRRCEQEGLPAHVREEFFGLLQY 311

Query: 180 EVAQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPN 238
            VA Y+++D+ G+P S+Q   RPL     RLK K+GR RGNL GKRV+++ RTVI+ DPN
Sbjct: 312 HVATYMDNDIAGLPRSIQKSGRPLKAIRARLKSKEGRLRGNLMGKRVDFSARTVITGDPN 371

Query: 239 LKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGK 298
           L + +V +P   AR+LT+PERV+ +NI K+++ ++NGPD++PGA+ +   DG+ R+    
Sbjct: 372 LDLDQVGVPRSTARVLTFPERVTVYNIHKMQELVRNGPDQHPGAKHVIREDGS-RIDLRY 430

Query: 299 FRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNP 358
            +    ++L+ G IV+RH+ DGD ++FNRQPSLH+ S+M HR ++MP+ T R N SV +P
Sbjct: 431 HKRAGEIQLQLGWIVERHIVDGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRMNLSVTSP 490

Query: 359 YNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK 418
           YNADFDGDEMN+HVPQ  E R E   L  V +N+ +P+    L+   QD +   +++T+K
Sbjct: 491 YNADFDGDEMNLHVPQGHETRAEVANLCAVPHNIVSPQKNGPLMGIVQDTMAGCWMMTKK 550

Query: 419 DTFYDRAAFS--LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
           D   D       L+     DG+    +P PAI+KP   WTGKQ+ S+   P  N  +  +
Sbjct: 551 DVMIDYQELMNILLWVPSWDGV----VPPPAIIKPQPRWTGKQVASLFFPPGLNYFMPAS 606

Query: 477 LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
                    N     E  +EI ++            N E++ G++ K  +G  ++ G+  
Sbjct: 607 --------KNDDNPHEEKKEILVQ------------NGEIMWGRIWKQVVG-ASQSGVVH 645

Query: 537 VLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL-SDKKGKLISENYEVC 595
            +  D G  A     +   ++   W+ +HGFS+GI D  P   +  + +G ++ E  +V 
Sbjct: 646 YIFNDRGPEAAVEFFSGCQRIVCHWMLHHGFSVGIGDTIPDDHMVGEIEGAIVEEKLQV- 704

Query: 596 NVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCG 655
           +  +++     ++  PG    +T E+     L+  R  AG A    +   N+  +M   G
Sbjct: 705 DKYVEQVQSDAMETLPGMTIRETFESQTKAALDNARNKAGDAAFALMKSCNNVGVMVNSG 764

Query: 656 SKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSA 715
           SKGS  N+SQM A VGQQS+ G+R P GF  R LPHFP+    PA++GFV NS+  GL+ 
Sbjct: 765 SKGSSTNVSQMTAAVGQQSLEGKRLPFGFKYRVLPHFPKDDYSPASRGFVENSYLRGLTP 824

Query: 716 TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGD 775
            EFFFH MGGREGL+DTAVKTA+TGY+ RRL+KALE++ I+YD +VRN+ G I+QF YG+
Sbjct: 825 QEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEEIMIKYDGTVRNSLGDILQFTYGE 884

Query: 776 DGMDPANMEGK 786
           DG+D   +E +
Sbjct: 885 DGLDATYIESQ 895



 Score =  167 bits (424), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/401 (30%), Positives = 192/401 (47%), Gaps = 61/401 (15%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFH AGV +   T+GVPR+KEI+N A+ 
Sbjct: 1067 NRFLRALVNPGEMVGVLAAQSIGEPATQMTLNTFHLAGVTAKTTTKGVPRLKEILNVAEN 1126

Query: 955  ISTP--IITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP   +  +      +  A+ ++  IE T L  V    +I     +   VI  D + +
Sbjct: 1127 IKTPNMKVFQDPAHGLTQEGAKNLRSMIEHTSLRNVTDVTEIYYDPVIEDTVIQADHDMV 1186

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKL---------------EIF----- 1052
            +   +     I +ES  + P+++ K     VL  R+L               E+F     
Sbjct: 1187 ESYFI-----IPEES--ERPELQSKWLLRIVLGRRQLLDKGLTVTNVADKIKEVFGGDVA 1239

Query: 1053 -----PPVDKSKIHFELY----------------SLK----NVLPMVIVKGIKTVERVVI 1087
                    D+  I   +                 +LK    ++L  V+++G+  V+R  +
Sbjct: 1240 VIFSDDNADEQVIRVRMITGGRDKENESEEEQEDTLKRLEGHMLDTVVLRGVSGVKRAFV 1299

Query: 1088 AEKEK-----EKRKVKENGEK--KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQT 1140
            + + +     +   VK N  +  K++ L  +G  L+ V+  EG+D  +T  NH   + + 
Sbjct: 1300 SNEARMITIEDGSLVKSNSVEACKEWLLDTDGVNLKDVLAVEGVDSTRTTCNHFQTIMKV 1359

Query: 1141 LGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLM 1200
             GIE  R  +I E  + +   G  ++ RHM +L D+M  RGE++ +TR GI + D   LM
Sbjct: 1360 FGIEGVRASLIKEFKDVLTNDGSYVNHRHMAILCDVMCARGELMAVTRHGINRADTGALM 1419

Query: 1201 LASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
              SFE+T + LF+A+ +G  D   GVSE II+G   P GTG
Sbjct: 1420 RCSFEETVEILFDAASSGELDDCRGVSENIILGQLAPSGTG 1460


>gi|390603892|gb|EIN13283.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Punctularia strigosozonata HHB-11173 SS5]
          Length = 1729

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 301/733 (41%), Positives = 437/733 (59%), Gaps = 41/733 (5%)

Query: 88  PVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDI 143
           P  V   FK+MTD+D  +L LS+   RPE +I+T + VPP  +RPS+ +DG +  +E+D+
Sbjct: 216 PSEVYTTFKKMTDSDLHLLGLSDEYARPEWMILTVLPVPPPPVRPSIAVDGGTMRSEDDL 275

Query: 144 TERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPL 202
           T +L  II+ +A++++   E   A  ++   + LQ  VA Y+++D+ G+P ++Q + RP+
Sbjct: 276 TYKLGDIIKASANVRKHEQEGVPAHVTMEYEQLLQFHVATYMDNDIAGIPQALQKSGRPV 335

Query: 203 SGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSD 262
                RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +A  LTYPERV+ 
Sbjct: 336 KAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLMLDEVGVPRSIAMTLTYPERVTP 395

Query: 263 HNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDV 322
           +NI  L++ ++NGP  YPGAR +    G    L  ++  +    L+ G IV+RHL+DGD 
Sbjct: 396 YNIAYLQELVRNGPTAYPGARYVVRDTGERIDL--RYNKRADAFLQYGWIVERHLKDGDY 453

Query: 323 VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA 382
           VLFNRQPSLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMNMHVPQ+EE R E 
Sbjct: 454 VLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAEL 513

Query: 383 LLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDR 440
             +  V   + +P+  + ++A  QD L      T +DTF D       L+     DG   
Sbjct: 514 AQIAWVPRQIISPQANKPVMAIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPEWDGT-- 571

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
             +P P I+KP  +WTGKQ+ S+ I P       +N+       S+  +  +G       
Sbjct: 572 --VPIPTIVKPKPMWTGKQILSMCI-PRG-----INIFRSPDPKSSSPVFDDG------- 616

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
                   +   N ++I G + K T+G+  + GL  V+ R+ G  AT G  + L ++   
Sbjct: 617 --------MMIENGDIIFGIVDKKTVGSA-QGGLIHVVFREKGPEATRGLFSGLQQVVNY 667

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           W+ ++GFSIGI D     + +    K+I++     +   ++    +L+ +PG    ++ E
Sbjct: 668 WLFHNGFSIGIGDTIADDKTTAVISKIIADRKATVSKITQDAYHDRLKPQPGMTIRESFE 727

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
           + +   LN  R+D+G+     L   N+   M   GSKGS INISQM  CVGQQSV GRR 
Sbjct: 728 SKVERELNLARDDSGQYAQKHLKEDNNVKQMVVAGSKGSYINISQMSVCVGQQSVEGRRI 787

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
           P GF  R+LPHF +    P A+GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+TG
Sbjct: 788 PFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPHEFFFHAMAGREGLIDTAVKTAETG 847

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPA-----NMEGKSGEPLNFDR 795
           Y+ RRL+KALED+++ YD +VRN+ G ++QF+YG+DGMD A     N+E  +   L+F+ 
Sbjct: 848 YIQRRLVKALEDVAVCYDGTVRNSLGDLIQFVYGEDGMDGAFIERQNIETFALSDLDFEH 907

Query: 796 LLMKVKATCPPAG 808
              +V  T P  G
Sbjct: 908 QY-RVDVTDPQGG 919



 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 129/415 (31%), Positives = 201/415 (48%), Gaps = 51/415 (12%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            + ++  E  +    +++       G   G + AQSIGEP TQMTL TFH+AGV+S N+T 
Sbjct: 1051 LNKEAFEWVLGEIETKFNQSVAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTL 1110

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN A  I TP +T  L  E   +   A+ V+  +  T L  V  +++I    
Sbjct: 1111 GVPRLKEIINVATNIKTPSLTVYLVPELQKDAMLAKNVQQELAYTTLRTVTAAVEIWYDP 1170

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKI-KLKQQHIKVLDFRKL-------- 1049
               S +I  D   ++      + +I  +  +Q+P + +L+    K+LD RKL        
Sbjct: 1171 DPTSTIIEEDQVFVESFFAIPDEEIESKLHLQSPWLLRLELDRNKMLD-RKLTMSYVAGR 1229

Query: 1050 -------------------------EIFPPVDKSKIHFE--------LYSLKN-VLPMVI 1075
                                      I    DK +            L SL+N +L  V 
Sbjct: 1230 IAESFKQDLFVIWSEDNSEKLVIRCRILGGADKDEDGLAGVMEEDEFLRSLENTMLNTVS 1289

Query: 1076 VKGIKTVERVVIAEKEK-----EKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTK 1130
            ++G+K +ERV + +  K     +      +  +K++ L  +G  L+ VM  +G+D  +T 
Sbjct: 1290 LRGVKGIERVFMMQHNKVVTRQDGTISARDENEKEWVLETDGINLKTVMCIDGVDFKRTY 1349

Query: 1131 SNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFG 1190
            SN+  E+   LGIEAAR  I+ E+   ++  G  ++ RH+ LL DLMT RG ++ ITR G
Sbjct: 1350 SNNCVEIFDVLGIEAARAAIMREMRNVIEFDGSYVNYRHLALLCDLMTQRGTLMAITRHG 1409

Query: 1191 IQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            I + D   LM  SFE+T + L  A+  G  D   G++E ++ G   P+GTG   +
Sbjct: 1410 INRADTGALMRCSFEETVEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFDV 1464


>gi|345565425|gb|EGX48374.1| hypothetical protein AOL_s00080g3 [Arthrobotrys oligospora ATCC
           24927]
          Length = 1760

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 300/715 (41%), Positives = 423/715 (59%), Gaps = 50/715 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSN--- 139
           L P  VL +FK +TD +   + L++   RPE ++IT +AVPP  +RPS+ +DG       
Sbjct: 232 LTPQMVLNIFKHITDDEITKMGLNKDYARPEWMVITVLAVPPPPVRPSISVDGMGGGGMR 291

Query: 140 -ENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVP 193
            E+D+T +L  II+ N +LQ+   E + A     F+SL     LQ  VA ++++D+ G P
Sbjct: 292 GEDDLTFKLGDIIKANNNLQRCEQEGSPAHVVNEFESL-----LQFHVATFMDNDIAGQP 346

Query: 194 FSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMAR 252
            ++Q   RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P   AR
Sbjct: 347 QAVQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSTAR 406

Query: 253 ILTYPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGC 311
           ILTYPE V+ +NI+KL   ++NGP+++PGA+ +IR  D   R+     +    + L+ G 
Sbjct: 407 ILTYPETVTPYNIKKLSALVKNGPNEHPGAKYVIR--DTGERIDLRHHKRAGEIALQYGW 464

Query: 312 IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMH 371
            V+RH+ DGD V+FNRQPSLH+ S+M HR R++P+ T R N SV +PYNADFDGDEMNMH
Sbjct: 465 KVERHIVDGDFVIFNRQPSLHKESMMGHRVRVLPYSTFRLNLSVTSPYNADFDGDEMNMH 524

Query: 372 VPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--L 429
           VPQ+EE R E   L  V   + +P+    L+   QD L   + + R+D F DR      L
Sbjct: 525 VPQSEETRAEVSQLCMVPLQIVSPQRNGPLMGIVQDTLCGVYKLCRRDVFLDRDQLMNVL 584

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           +     DG      P PAI+KP   WTGKQL S++I P       +NL   +K       
Sbjct: 585 LWVPEWDGT----FPPPAIVKPSPRWTGKQLISMVI-PKG-----INLVKPDK------- 627

Query: 490 RTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSG 549
             EG   +    +C  DG       EL+ G   K ++G  ++ G+   +  + G     G
Sbjct: 628 --EGMSPLADTGLCVTDG-------ELMFGLFSKKSVG-ASQGGMIHTIYNEKGWQTCMG 677

Query: 550 CMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQL 609
             N   ++   W+ ++GFSIGI D  P      K   ++++     +   K+  +  L+ 
Sbjct: 678 FFNGTQRVVNYWLLHNGFSIGIGDTIPDAATIQKIQDIVTQRKAEVDEVTKQAQDNVLEA 737

Query: 610 KPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVAC 669
            PG +  +T E  ++  LN  R+DAG A   SL   N+ + M++ GSKGS INISQM A 
Sbjct: 738 LPGMNIRETFENKVSRSLNLARDDAGSATEKSLKDLNNAIQMARSGSKGSNINISQMSAV 797

Query: 670 VGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
           VGQQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH M GREGL
Sbjct: 798 VGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGL 857

Query: 730 VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           +DTAVKTA+TGY+ RRL+KALED+  +YD +VRN+ G I+QF YG+DG+D  +ME
Sbjct: 858 IDTAVKTAETGYIQRRLVKALEDVMCKYDGTVRNSLGDIIQFCYGEDGLDGQHME 912



 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 201/418 (48%), Gaps = 60/418 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T+  L+  I    +R+       G  +G + AQSIGEP TQMTL TFHFAGV+S N+T 
Sbjct: 1070 LTKVALDWVIGEIKARFAKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTL 1129

Query: 941  GVPRIKEIINGAKRISTPIITA--ELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEI+N AK I TP +T   E E   N   A++++  +E T L  V ++ +I    
Sbjct: 1130 GVPRLKEILNVAKNIKTPSLTVYQEPEHMYNREKAKLLRSAVEHTTLRSVCEATEIYFDP 1189

Query: 999  RLASIVIALDMETIQ----------DAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRK 1048
                 VI  D + ++          + H+  ++  V   I+   K+  K   I+ +  + 
Sbjct: 1190 EPKDTVIEADKDIVEAFFFMPDAAVEQHISRHSPWVLRIIIDRRKMIDKGLRIEDIAGKI 1249

Query: 1049 LEIFPPVDKSKIHFELYSLKN--------------------------------VLPMVIV 1076
            +E +      +  F ++S  N                                VL  + +
Sbjct: 1250 METY-----DRDLFVIFSDNNADELVIRCRLLIDREDKEGLEEDLMLKRFEAHVLDALTL 1304

Query: 1077 KGIKTVERVVIAEKEKEKRKVKENGEKK---------KYRLLVEGTGLQAVMGAEGIDGC 1127
            +G++ + R  I   EK + KV  NG            +Y L   GT L AV+  +G+D  
Sbjct: 1305 RGVQGISRAFI--NEKTRVKVDNNGGLVMNRSEPGCIEYVLDTSGTNLAAVLTIDGVDPT 1362

Query: 1128 KTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGIT 1187
            +  SN+  EV +  GIEA R  ++ E+ + +   G  +++RH+ LL D+MT RG ++ IT
Sbjct: 1363 RAYSNNFVEVLEVFGIEATRGALLKELTQVLAFDGSYVNQRHLTLLCDVMTSRGHLMAIT 1422

Query: 1188 RFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            R GI + D   LM  SFE+T + L  A+  G  D   G+SE +++G   P+GTG   +
Sbjct: 1423 RHGINRADTGALMRCSFEETVEILLEAAAAGELDDCRGISENVMLGQLAPMGTGEFDV 1480


>gi|408381652|ref|ZP_11179200.1| DNA-directed RNA polymerase subunit A' [Methanobacterium formicicum
           DSM 3637]
 gi|407815583|gb|EKF86153.1| DNA-directed RNA polymerase subunit A' [Methanobacterium formicicum
           DSM 3637]
          Length = 871

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 281/729 (38%), Positives = 429/729 (58%), Gaps = 36/729 (4%)

Query: 82  ATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS 138
             Y L P  V    +++ + D   L ++    RPE +++T + VPP+ +RPS+ ++  + 
Sbjct: 167 GNYKLTPSEVRERLEKIPEDDYVYLGINSKVARPEWMVLTVLPVPPVTVRPSITLETGER 226

Query: 139 NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQ 197
           +E+D+T +L  I++ N  L++ +            WE LQ  V  Y +++  GVP +  +
Sbjct: 227 SEDDLTHKLVDILRINQRLKENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHR 286

Query: 198 VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYP 257
             RPL    QRLKGK+GRFR NLSGKRV ++ RTVISPDPN+ I EV +P+ +A  +T P
Sbjct: 287 SGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVISPDPNISINEVGVPLMIATEVTVP 346

Query: 258 ERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHL 317
             V++ NIE +++ I+NGP ++PGA  +  PD     +Y + +  +  +L+ G +V+RHL
Sbjct: 347 IYVTEWNIEDMKKYIRNGPKQHPGANYVIRPDARKIRVYDETKEAIIEKLEPGFVVERHL 406

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            DGD+VLFNRQPSLHRMS+M H  +++P++T R N  VC PYNADFDGDEMNMHV QTEE
Sbjct: 407 MDGDIVLFNRQPSLHRMSMMAHEVKVLPYKTFRLNLCVCPPYNADFDGDEMNMHVFQTEE 466

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDT-FYDRAAFSLMCCYMGD 436
           +R EA  LM VQ ++ +P+ G  ++    D ++ ++L+TR+ + F +   F +       
Sbjct: 467 SRAEAKSLMRVQEHILSPRFGGPIIGGIHDHISGAYLLTREGSNFREDDVFQM------- 519

Query: 437 GMDRVDLPTPAILKPV-ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
            + +  LP P   KP  + WTGK++FS+L+    NM            Y  ++ R + DE
Sbjct: 520 -LKKSQLPIP---KPRNQEWTGKEIFSLLLPKDLNM-----------VYKAEICR-KCDE 563

Query: 496 EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
            +R E  C ND +V   N +L SG + +   G  +   L SV +++YG       ++   
Sbjct: 564 CLRQE--CKNDAYVVIENGQLKSGAIDEKAYGAFSGKILDSV-VKEYGTDRAREFLDAAT 620

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           KL+   I   GF+    D +  +E  D+  +L+S   +   + I+ Y+  +L+  PG   
Sbjct: 621 KLAISGIMKRGFTTSTADEEIPREAQDRIEELLSRAEQKVEMLIEAYHNDELEALPGRSL 680

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            +TLE  I  +L   R+ +G+         N  +IM+  G++GS +N++Q+ ACVGQQSV
Sbjct: 681 RETLEMKIMQVLGEARDKSGEIAESYFGMDNHAVIMALTGARGSMLNLTQIAACVGQQSV 740

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G R   G+  R+LPHF        A GFV +S+ +GL   EFFFH MGGREGLVDTA++
Sbjct: 741 RGGRIERGYSKRTLPHFQEGELGAKASGFVHSSYKTGLDPLEFFFHAMGGREGLVDTAIR 800

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR 795
           TA +GYM RRL+ AL+DLS+  D +VR+  G ++Q  YG+DG+DPA  +   G+  + DR
Sbjct: 801 TAQSGYMQRRLVNALQDLSVNADKTVRDNRGVVIQTHYGEDGIDPAKSD--YGKVADIDR 858

Query: 796 LL--MKVKA 802
           L+  M++KA
Sbjct: 859 LIEEMRIKA 867


>gi|345004224|ref|YP_004807077.1| DNA-directed RNA polymerase subunit A' [halophilic archaeon DL31]
 gi|344319850|gb|AEN04704.1| DNA-directed RNA polymerase subunit A' [halophilic archaeon DL31]
          Length = 977

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 279/721 (38%), Positives = 408/721 (56%), Gaps = 40/721 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++   F+ + D D E + +     RPE +I+T + VPP+  RPS+ +D  Q +E+D
Sbjct: 248 LMPSDIRDWFEDIPDDDLEHIGIDSEHSRPEWMIMTVLPVPPVTTRPSITLDNGQRSEDD 307

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N    +              WE LQ  V  ++++++ G P +  +  RP
Sbjct: 308 LTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFVDNEISGTPPARHRSGRP 367

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+AR +T    VS
Sbjct: 368 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPERVAREMTQTMNVS 427

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
           + N+E+ R  +++GP  +PGA  ++ PDG    +  K   +LA +++    V RHL DGD
Sbjct: 428 ERNLEEARTYVRHGPQGHPGANYVKRPDGRRLKVTKKNCEELAEKVEPEWEVSRHLTDGD 487

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +V+FNRQPSLHRMSIM H   +MP++T R N +VC PYNADFDGDEMNMH  Q EEAR E
Sbjct: 488 IVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTTVCTPYNADFDGDEMNMHALQNEEARAE 547

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD-TFYDRAAFSLMCCYMGDGMDR 440
           A +LM VQ  + +P+ GE ++ + QD ++ ++L+T  + +F +  A  L+     D    
Sbjct: 548 ARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTNSNPSFSENQALDLLRATSVD---- 603

Query: 441 VDLPTPAILKPVE-LWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
            +LP P   +  +  WTG+ +FS L+    ++                  R+E D+E+ I
Sbjct: 604 -ELPEPDGEENGQAYWTGRTVFSELLPGDLDLE----------------FRSEADDEVVI 646

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
           E            N +L+ G + +  +G    D +   + +DY        +N +A L+ 
Sbjct: 647 E------------NGQLLQGTIDEGAIGAFGGD-IVDTITKDYSKTRARVFINEVATLAM 693

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
           R I + GFSIGIDD     E S++  + I   +E     I  Y  G+L   PG    +TL
Sbjct: 694 RSIMHFGFSIGIDDESIPPEASEQVDEAIDNAHERVEELIDTYRAGELNSIPGRTVDETL 753

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E  I   L + R+ AG          N  ++M++ G++GS +N++QM  CVGQQSV G R
Sbjct: 754 ELKIMQTLGKARDSAGDIAGDHFADDNPAVVMARSGARGSMLNLTQMAGCVGQQSVSGER 813

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
              G+ DR+L H+ R      A GFV NS+ SGLS  EFFFH MGGREGLVDTAV+T+ +
Sbjct: 814 INRGYEDRTLSHYQRNDLSAEAHGFVENSYRSGLSPREFFFHAMGGREGLVDTAVRTSKS 873

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 799
           GY+ RRLI AL +L  QYD +VR+  G IVQF +G+DG  P  +      P++ + +  +
Sbjct: 874 GYLQRRLINALSELEAQYDGTVRDTSGTIVQFEFGEDGTSPVKVSSNEDNPIDVEGITQR 933

Query: 800 V 800
           V
Sbjct: 934 V 934


>gi|289193125|ref|YP_003459066.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus sp.
           FS406-22]
 gi|288939575|gb|ADC70330.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus sp.
           FS406-22]
          Length = 891

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 292/729 (40%), Positives = 439/729 (60%), Gaps = 35/729 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P +V  + +++ D DC +L L+    RPE +++T + VPP+ +RPS+ ++  + +E+D
Sbjct: 180 LTPSDVREILEKIPDEDCILLGLNPEVARPEWMVLTVLPVPPVTVRPSITLETGERSEDD 239

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N  L++ +            W  LQ  V  Y +++  G+P +  +  RP
Sbjct: 240 LTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHVNTYFDNEAPGIPPAKHRSGRP 299

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFR NL+GKRV ++ RTVISPDP L I EV +P  +A+ LT PE+V+
Sbjct: 300 LKTLAQRLKGKEGRFRYNLAGKRVNFSSRTVISPDPCLSINEVGVPEVVAKELTVPEKVT 359

Query: 262 DHNIEKLRQCIQNGPDKYPGA----RMIRYPDGTARVLYGKF----RNQLAVELKSGCIV 313
            +NIE++RQ ++NG +K+PG     R +   DGT +    K     ++  A  +K G IV
Sbjct: 360 KYNIERIRQLLRNGSEKHPGVNYVIRKMVGRDGTEQEFKVKITESNKDFWAENIKEGDIV 419

Query: 314 DRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVP 373
           +RHL DGD+VL+NRQPSLHRMSIM HR R++P+RT R N  VC PYNADFDGDEMN+HVP
Sbjct: 420 ERHLMDGDIVLYNRQPSLHRMSIMAHRVRVLPYRTFRHNLCVCPPYNADFDGDEMNLHVP 479

Query: 374 QTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCY 433
           Q+EEAR EA  LM V+ ++ +P+ G  ++ +  DF++ ++L+T      D A   L    
Sbjct: 480 QSEEARAEAEALMLVEKHILSPRFGGPIIGAIHDFISGAYLLTSNYFTKDEATLILRSGG 539

Query: 434 MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
           + D +   D     +   V L++GK++FS  +    N+R           Y  K+ R   
Sbjct: 540 IKDELWEPD----KVENGVPLYSGKKIFSKALPKGLNLR-----------YKAKICRK-- 582

Query: 494 DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGL-YSVLLRDYGAHATSGCMN 552
            +E + E  CP D +V  ++ ELI G + K   G G + GL    +++++G  A    ++
Sbjct: 583 CDECKKED-CPYDAYVVIKDGELIKGVIDKN--GYGAEAGLILHTIVKEFGPEAGRKFLD 639

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
              K++ R +   GF+ GIDD    +E   +  K++ E  E     I++Y  G+L+L PG
Sbjct: 640 SATKMAIRAVMLRGFTTGIDDEDLPEEALKEIEKVLDEAEEKVKEIIEKYERGELELLPG 699

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
            +  ++ EA I+++L   R+ AG      L   N  +IM+  G++G+ +N++QM AC+GQ
Sbjct: 700 LNLEESREAYISNVLREARDKAGAIAERYLGLDNHAVIMAVTGARGNILNLTQMAACLGQ 759

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           QSV G+R   G+  R LPHF +      + GFV +S+  GLS TEFFFH MGGREGLVD 
Sbjct: 760 QSVRGKRIFRGYRGRVLPHFEKGDLGAKSHGFVRSSYKKGLSPTEFFFHAMGGREGLVDQ 819

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLN 792
           AV+TA +GYM RRLI AL+DL  ++D +VR++ G ++QF YG+DG+DP  M    G+ +N
Sbjct: 820 AVRTAQSGYMQRRLINALQDLKTEFDGTVRDSRGIMIQFKYGEDGIDP--MLADRGKAVN 877

Query: 793 FDRLLMKVK 801
            DR++ KVK
Sbjct: 878 IDRIIDKVK 886


>gi|110669629|gb|ABG81909.1| RNA polymerase II largest subunit [Roccella fuciformis]
          Length = 1017

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 288/712 (40%), Positives = 416/712 (58%), Gaps = 43/712 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS--- 138
           I+ P   L +F+ +TD    +L  +    RPE LI+T + VPP A+RPS+ +DG+     
Sbjct: 137 IITPQMALNVFRNITDRGLTLLGSNADYARPEWLILTVLPVPPPAVRPSISVDGTSQGMR 196

Query: 139 NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ- 197
           +E+D+T +L  II+ N+++++   E +           LQ  VA Y+++D+ G+P + Q 
Sbjct: 197 SEDDLTYKLSDIIRANSNVKRCEQEGSPQHVVDEFVSLLQYHVATYMDNDIAGLPKAQQK 256

Query: 198 VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYP 257
             RP+     RLK K+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LT+P
Sbjct: 257 SGRPVKAIRARLKSKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTFP 316

Query: 258 ERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHL 317
           E V+ +NI K+ + ++NGPD +PGA+ +   +G  R+     +    ++L+ G  V+RH+
Sbjct: 317 ETVNSYNINKMHELVRNGPDIHPGAKYVIRDNG-ERIDLRHHKQPQNIQLQVGWKVERHI 375

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            DGD ++FNRQPSLH+ S M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE
Sbjct: 376 VDGDYIIFNRQPSLHKESRMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEE 435

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DRAAFSLMCCYMG 435
            R E + L  V  N+ +P+    L+   QD L   + I R+D F   ++    L+     
Sbjct: 436 TRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTQEQVMNVLLWVPSW 495

Query: 436 DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRT--EG 493
           DG+    LP PAI+KP   WTGKQ+ S+ + P  N                 L+R   EG
Sbjct: 496 DGV----LPQPAIVKPSPRWTGKQIISMALVPGLN-----------------LVRKGEEG 534

Query: 494 DEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
           D        CP ND  +   N ELI G   K ++G     G+   +  + G  A    +N
Sbjct: 535 D--------CPVNDDGLLIDNGELIYGLFSKKSVG-ATGGGVIHTIFNERGPEAAVAFIN 585

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
               +   W+ ++GFSIGI D  P    +    + ++E  E            +L+  PG
Sbjct: 586 GAQTIVNYWLLHNGFSIGIGDTVPDDNTTIGINQAVAEQKEAVRQITHSATGNELEALPG 645

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
            +  +T E+ ++  LN  R++AG     SL   N+ + M++ GSKGS INISQM A VGQ
Sbjct: 646 MNIRETFESKVSKALNSARDNAGSRTEKSLKDLNNAIQMARAGSKGSTINISQMTAVVGQ 705

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           QSV G+R P GF  R+LPHF +    P ++GFV N +  GL+  EFFFH M GREGL+DT
Sbjct: 706 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENPYLQGLTPAEFFFHAMAGREGLIDT 765

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           AVKTA+TGY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D  ++E
Sbjct: 766 AVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDAVHIE 817


>gi|397568287|gb|EJK46059.1| hypothetical protein THAOC_35301 [Thalassiosira oceanica]
          Length = 1754

 Score =  514 bits (1325), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 293/712 (41%), Positives = 426/712 (59%), Gaps = 39/712 (5%)

Query: 96  KRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRII 151
           KRM D D + L L     RPE   I+ + VPP+ +RPSV+M G +QS+E+D+T +L  I+
Sbjct: 222 KRMRDEDAKALGLDVTWARPEWTCISVMPVPPLHVRPSVVMGGGAQSSEDDLTHQLVNIV 281

Query: 152 QTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVP-FSMQVARPLSGFVQRLK 210
           ++N +L+  +             + LQ  V  ++N+++RG+P  + +  RPL    QRLK
Sbjct: 282 KSNIALRTAIKNGEPNIIVEQFEQALQHNVCAFMNNELRGMPQVTQRSGRPLKTLTQRLK 341

Query: 211 GKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQ 270
            K+GR RGNL GKRV+++ RTVI+ DPNL I +V +P  +A  LT P RV+  NI +L  
Sbjct: 342 SKEGRIRGNLMGKRVDFSARTVITADPNLGIHQVGVPRSIAMNLTVPTRVTPFNIHELSA 401

Query: 271 CIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPS 330
            + NGP ++PGA+ I   DG  R+     +N+  + L +G IV+RHL DGD+VLFNRQPS
Sbjct: 402 LVANGPTEHPGAKHIIRSDGL-RIDLRYVKNKSDLLLANGWIVERHLNDGDIVLFNRQPS 460

Query: 331 LHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQN 390
           LH+MSIM H+A+++ W T R N S  +PYNADFDGDEMN+HVPQ+  AR EA L+M    
Sbjct: 461 LHKMSIMGHQAKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQSLPARAEAELMMHSPK 520

Query: 391 NLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILK 450
            + + ++   ++   QD L     +T++D F  +     +  ++ D   R+  P PAI K
Sbjct: 521 VIVSGQSNRPVMGIIQDSLLGVQKMTKRDIFIKKDLLMNILMWVTDWDGRI--PPPAIYK 578

Query: 451 PVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVY 510
           P ELWTGKQ+ + LI P  N+R   N    +    N       D ++RI           
Sbjct: 579 PEELWTGKQIMT-LILPKINLRGKANNGGPKPDTFNVY-----DNQVRI----------- 621

Query: 511 FRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIG 570
               ELI G + K T+G+G    +++  L D G   T+  MN+  ++   WI  + FSIG
Sbjct: 622 -MEGELIEGTIDKKTIGSGMGGIIHTAWL-DVGHEDTTRFMNQTQQVVNHWILQYSFSIG 679

Query: 571 ----IDDVQPKKELSD--KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
               I DV   +++++   K KL      V ++ +++   G+L+ +PG    ++ E ++ 
Sbjct: 680 ACDAIADVSTMEQIANTINKAKL-----NVLDL-VRKGQRGELETQPGRTMIESFEQLVN 733

Query: 625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
            +LN  R+ AGK+   SL   NS   M   GSKGS INISQ++ACVGQQ+V G R P GF
Sbjct: 734 RVLNTARDHAGKSAQSSLSETNSVKAMVTAGSKGSFINISQIIACVGQQNVEGNRIPYGF 793

Query: 685 IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
             R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTA KTA+TGY+ R
Sbjct: 794 KRRTLPHFQKDDLGPESRGFVENSYLFGLTPQEFFFHAMGGREGLIDTACKTAETGYIQR 853

Query: 745 RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           RL+KA+E +  +YD ++R +GG IVQFLYG+DGMD   +E +S + L  +++
Sbjct: 854 RLVKAMETVMARYDGTLRTSGGQIVQFLYGEDGMDAVWIEKQSFDSLTLNKV 905



 Score =  106 bits (265), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 107/183 (58%), Gaps = 9/183 (4%)

Query: 1068 KNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEK-----KKYRLLVEGTGLQAVMGAE 1122
            K++L  + ++G++ V++V +    +E+++VK + E+      ++ L  +G+ L +V+G E
Sbjct: 1303 KSMLQTLKLRGVEDVKKVFM----REEKRVKWDDERGFQRIDEWVLETDGSNLMSVLGIE 1358

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
             +D  +T SN I EV   LGIE  R  I+ E+   +   G  ++ RH+  L D+MT  G 
Sbjct: 1359 HVDASRTISNDIVEVFTVLGIEGVRAAILSELRNVISFDGSYVNYRHLACLVDVMTMHGH 1418

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            ++ + R GI +++   L+  SFE+T D L +A++   ++ + GV+E I+MG    +GTG 
Sbjct: 1419 LMAVDRHGINRVESGPLLRCSFEETVDMLNDAALYAEEEVLRGVTENIMMGQLARVGTGD 1478

Query: 1243 LKI 1245
            + +
Sbjct: 1479 IDL 1481



 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 82/138 (59%), Gaps = 2/138 (1%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++E  L   I    +R+   +V  G   G + AQSIGEP TQMTL TFH+AGV++ N+T 
Sbjct: 1062 LSEAALNWVIGEIETRFHHAKVSPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1121

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN AK + TP +T  L  + + + + A++V   IE T+LG V K  +I    
Sbjct: 1122 GVPRLKEIINVAKTVKTPGLTIHLKPQVSGDADIAKMVHSSIEYTVLGDVTKLTEIYYDP 1181

Query: 999  RLASIVIALDMETIQDAH 1016
               + ++  D E ++D +
Sbjct: 1182 DPMNTIVEQDREFVKDYY 1199


>gi|333986472|ref|YP_004519079.1| DNA-directed RNA polymerase subunit A' [Methanobacterium sp.
           SWAN-1]
 gi|333824616|gb|AEG17278.1| DNA-directed RNA polymerase subunit A' [Methanobacterium sp.
           SWAN-1]
          Length = 873

 Score =  514 bits (1324), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 298/799 (37%), Positives = 449/799 (56%), Gaps = 60/799 (7%)

Query: 9   LRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASA 68
           L+  + + SI+K+  T+A +  KCP C      VK    V  I+    K+T S       
Sbjct: 126 LKNNESITSIIKEIYTVARRD-KCPHCETEQEDVKIDKPV-SIVEGNYKLTAS------- 176

Query: 69  ITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIR 128
               +E   A+    Y+   +N             EV     RPE +++T + VPP+ +R
Sbjct: 177 --EVRERLEAIPEEDYLFVGIN------------SEVA----RPEWMVLTVLPVPPVTVR 218

Query: 129 PSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSD 188
           PS+ ++  + +E+D+T +L  I++ N  L++ +            WE LQ  V  Y +++
Sbjct: 219 PSITLETGERSEDDLTHKLVDILRINQRLKENMEAGAPQLIVEDLWELLQYHVTTYFDNE 278

Query: 189 VRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIP 247
             GVP +  +  RPL    QRLKGK+GRFR NLSGKRV ++ RTVISPDPN+ I EV +P
Sbjct: 279 ASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVISPDPNISINEVGVP 338

Query: 248 IRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVEL 307
             +A  +T P  V+D NI+K+++ I NGP K+PGA  +  PD     +Y + +  +  +L
Sbjct: 339 EMIATEVTVPVHVTDWNIDKMKEYIMNGPKKHPGANYVIRPDQRKIRVYDETKETIVEKL 398

Query: 308 KSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDE 367
           + G +V+RHL DGDVVLFNRQPSLHRMS+M H  +++P++T R N  VC PYNADFDGDE
Sbjct: 399 EPGFVVERHLIDGDVVLFNRQPSLHRMSMMAHEVKVLPYKTFRLNLCVCPPYNADFDGDE 458

Query: 368 MNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR-KDTFYDRAA 426
           MNMH+ QTEE+R EA  LM VQ ++ +P+ G  ++    D ++ ++L+TR    F D   
Sbjct: 459 MNMHIFQTEESRAEAKSLMRVQEHILSPRFGGPIIGGIHDHISGAYLLTRLGSNFSDEDV 518

Query: 427 FSLMCCYMGDGMDRVDLPTPAILKPV-ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS 485
           F ++         R  +P P   KP    WTGK++FS+L+    NM            Y+
Sbjct: 519 FQMVM--------RAGMPIP---KPKGRDWTGKEIFSLLLPKDLNM-----------VYN 556

Query: 486 NKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAH 545
            ++ R + DE ++ E  C ND +V   N EL +G + +   G  +   L S+ +++YG  
Sbjct: 557 AEICR-KCDECLKQE--CKNDAYVVIENGELKTGAIDEKAYGAFSGKILDSI-VKEYGTD 612

Query: 546 ATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEG 605
           A    ++   KL+   I   GF+    D +  +E  D+  +L++   +     I  Y+  
Sbjct: 613 AAREFLDSSTKLAITGIMKRGFTTSTADEEIPQEAKDRIEELLANAEKKVENLIAAYHNE 672

Query: 606 KLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQ 665
           +L+  PG    +TLE  I  +L   R+ +G+         N  +IM+  G++GS +N++Q
Sbjct: 673 ELEALPGRSLRETLEMKIMQVLGEARDKSGEIAESYFGMDNHAVIMALTGARGSMLNLTQ 732

Query: 666 MVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGG 725
           + ACVGQQSV G R   G+ +R+LPHF        A GFV +S+  GL   EFFFH MGG
Sbjct: 733 IAACVGQQSVRGGRIERGYSNRTLPHFYEGELGAKASGFVHSSYKKGLDPLEFFFHAMGG 792

Query: 726 REGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEG 785
           REGLVDTA++TA +GYM RRL+ AL+DLS+  D +VR+  G +VQ  YG+DG+DPA  + 
Sbjct: 793 REGLVDTAIRTAQSGYMQRRLVNALQDLSVHTDGTVRDNRGIVVQTRYGEDGIDPAKSD- 851

Query: 786 KSGEPLNFDRLL--MKVKA 802
             G+  + DR++  M++K+
Sbjct: 852 -YGKVADIDRMIEEMRIKS 869


>gi|351518437|gb|AEQ39959.1| RNA polymerase II largest subunit [Lecophagus sp. ATCC 56071]
          Length = 1000

 Score =  514 bits (1324), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 287/709 (40%), Positives = 423/709 (59%), Gaps = 39/709 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNE- 140
           +L P +VL +FK ++D D   + LS+   RPE +I+T +AVPP  +RPS+ ++G      
Sbjct: 129 VLTPQDVLNIFKHISDEDILRMGLSKDYARPEWMILTCMAVPPPPVRPSISVEGMGGGMR 188

Query: 141 --NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQV 198
             +D+T +L  II+ N +L++   E + A         LQ  VA ++++D+ G P ++Q 
Sbjct: 189 GEDDLTFKLSDIIKANVNLRRCEQEGSPAHVVAEFESLLQFHVATFMDNDIAGQPQAVQK 248

Query: 199 A-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYP 257
           + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYP
Sbjct: 249 SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYP 308

Query: 258 ERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
           E V+ +NI +L Q ++NGP+ +PGA+ +IR  D   R+     +    + L+ G  V+RH
Sbjct: 309 ETVTPYNIHRLHQLVRNGPNDHPGAKCVIR--DTGERIDLRHHKRAGEISLQYGWKVERH 366

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           + DGD ++FNRQPSLH+ S+M HR R++P+ T R + SV +PYNADFDGDEMN+HVPQ+E
Sbjct: 367 IIDGDFIIFNRQPSLHKESMMGHRIRVLPYSTFRLHLSVTSPYNADFDGDEMNLHVPQSE 426

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           E R E   L  V   + +P+    L+   QD L   + +TR+D F DR A   +  ++  
Sbjct: 427 ETRAEVSQLCMVPLQIVSPQRNGPLMGIVQDTLCGVYKMTRRDVFLDRNAVMNILLWV-P 485

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
           G D V +P PAI+KP   WTGKQ+ S++I P+ N+                         
Sbjct: 486 GWDGV-IPPPAIIKPRARWTGKQVISLIIPPNINL------------------------- 519

Query: 497 IRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
           ++   M P  D  ++  N EL+ G L K  +G  ++ GL  ++  + G+    G  N   
Sbjct: 520 VKTSDMPPLTDDGLWVSNGELLFGLLSKKVVG-ASQGGLIHIIYNEKGSKTCMGFFNGCQ 578

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
            ++  W+ ++GFSIGI D  P  +   +  +++           ++  E  L+  PG + 
Sbjct: 579 LVTNYWLLHNGFSIGIGDTIPDAKTVKRIQEIVDAKKAEVEEVTRKAQENTLEALPGMNI 638

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            +T E  ++  LN  R++AG A   SL   N+ + M++ GSKGS INISQM A VGQQSV
Sbjct: 639 RETFENKVSKSLNGARDEAGSATEKSLKDLNNAIQMARSGSKGSNINISQMSAVVGQQSV 698

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R P GF  R+LPHF +      ++GFV NS+  GL+  EFFFH M GREGL+DTAVK
Sbjct: 699 EGKRIPFGFKYRTLPHFTKDDYSAESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVK 758

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           TA+TGY+ RRL+KALED+  +YD +VRN+ G IV F YG+DG+D  ++E
Sbjct: 759 TAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVTFCYGEDGLDGQHIE 807


>gi|397135822|gb|AFO11406.1| RNA polymerase I, partial [Ascoidea rubescens]
          Length = 872

 Score =  514 bits (1324), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 291/705 (41%), Positives = 420/705 (59%), Gaps = 33/705 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  VL  FK ++  DC  L   E   RPE +IIT + VPP  +RPS+  + S   E+D
Sbjct: 15  LAPSEVLEAFKHISLEDCRRLGFDENYARPEWMIITVLPVPPPPVRPSIAFNESARGEDD 74

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  I++ + ++Q+  ++ +     +     LQ  VA Y+++D+ G P +  +  R 
Sbjct: 75  LTFKLADILKASINVQKLELDGSPQHVIIEFENLLQYHVATYMDNDIAGQPLAKHKSGRA 134

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLK K+GR RGNL GKRV+++ RTVIS DPNL + +V +P  +ARILTYPE V+
Sbjct: 135 IKSIRARLKSKEGRVRGNLMGKRVDFSARTVISGDPNLDLDQVGVPRSIARILTYPEIVT 194

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
            +NI +L + ++NGP+++PGA+ +   D   R+     +    ++L+ G  V+RHL D D
Sbjct: 195 PYNIHRLTEYVRNGPNEHPGAKHV-IRDTGDRIDLKYHKKAGDIQLQYGWRVERHLMDDD 253

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
            VLFNRQPSLH+MS+MCHRA+IMP+ T R N SV +PYNADFDGDEMN+HVPQ+ E R E
Sbjct: 254 PVLFNRQPSLHKMSMMCHRAKIMPYSTFRINLSVTSPYNADFDGDEMNLHVPQSAETRAE 313

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYMGDGMD 439
              L+ V   + +P++ + ++   QD L     +T +D F  YD+    +  CY     +
Sbjct: 314 LQNLVAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQV---MQICYWVKDWN 370

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
            + +P PAILKP  LWTGKQL S+ I    ++     L   EKT                
Sbjct: 371 GI-MPPPAILKPKPLWTGKQLLSLAIPEGIHL-----LRFDEKT---------------- 408

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
             + PND  +   N E++ G + K T+G  N  GL   ++R+ G+ A +     + K+  
Sbjct: 409 TLLSPNDDGMLIINGEIMFGIVNKKTVGATNG-GLIHTVMREKGSKACADLFGNIQKIVN 467

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
            W+ ++GFSIGI D     +   K    I+E  +     I +    +L+L+PG    ++ 
Sbjct: 468 YWLLHNGFSIGIGDTIADADTMKKITTTIAEAKQKVQDLILDAQANRLELEPGMTLRESF 527

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E+ ++ +LN+ R+DAG     +L   N+   M   GSKGS INISQM ACVGQQ V G+R
Sbjct: 528 ESKVSRVLNQARDDAGHCAQMNLKELNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKR 587

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GF DR+LPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DTAVKTA+T
Sbjct: 588 IPFGFADRTLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET 647

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           GY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D   +E
Sbjct: 648 GYIQRRLVKALEDIMVHYDGTTRNSVGAIIQFIYGEDGLDATQVE 692


>gi|333911408|ref|YP_004485141.1| DNA-directed RNA polymerase subunit A' [Methanotorris igneus Kol 5]
 gi|333751997|gb|AEF97076.1| DNA-directed RNA polymerase subunit A' [Methanotorris igneus Kol 5]
          Length = 890

 Score =  514 bits (1324), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 284/731 (38%), Positives = 446/731 (61%), Gaps = 35/731 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P +V  + +++ D DC +L L+    RPE +++T + VPP+ +RPS+ ++  + +E+
Sbjct: 178 LLTPSDVREILEKIPDEDCILLGLNPEVMRPEWMVLTVLPVPPVTVRPSITLESGERSED 237

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVAR 200
           D+T +L  II+ N  L++ +            W+ LQ  V  Y +++  G+P +  +  R
Sbjct: 238 DLTHKLVDIIRINQRLEENIEGGAPNLIIEDLWDLLQYHVNTYFDNEAPGIPPARHRSGR 297

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GRFR NL+GKRV ++ RTVISPDP L I EV +P  +A+ LT PE+V
Sbjct: 298 PLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPCLSINEVGVPEVVAKELTVPEKV 357

Query: 261 SDHNIEKLRQCIQNGPDKYPGA----RMIRYPDG---TARVLYGKFRNQLAVE-LKSGCI 312
           + +NI+K+R+ ++NG +K+PG     + ++  DG     ++   +      VE ++ G I
Sbjct: 358 TKYNIDKIRELLKNGSEKHPGVNYVIKKVKLRDGREEEVKIKITEKNKDFWVENIEEGMI 417

Query: 313 VDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHV 372
           V+RHL DGD+VL+NRQPSLHRMSIM HR +++P+RT R N  VC PYNADFDGDEMN+HV
Sbjct: 418 VERHLMDGDIVLYNRQPSLHRMSIMAHRVKVLPYRTFRHNLCVCPPYNADFDGDEMNLHV 477

Query: 373 PQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCC 432
           PQ+EEAR EA  LM V+ ++ +P+ G  ++ +  D++T ++L+T      D A+  L   
Sbjct: 478 PQSEEARAEAEALMLVEKHILSPRFGGPIIGAIHDYITGAYLLTSSYFTKDEASIILRSG 537

Query: 433 YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
            + D +   D     I   + L++GK++FS  +    N++           Y  K+ +  
Sbjct: 538 GIKDELWEPD----KIENGIPLYSGKKIFSKALPKGLNLK-----------YRAKICKK- 581

Query: 493 GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGL-YSVLLRDYGAHATSGCM 551
             +E + E  CP+D +V  +N ELI G + K   G G + G+    +++++G+      +
Sbjct: 582 -CDECKKED-CPHDAYVVIKNGELIKGVVDKN--GFGAEAGIILDTIVKEFGSEEARKFL 637

Query: 552 NRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
           +   K++ R I   GF+ GIDD    +E   +  K++ +  E  N  I++Y  G+L+  P
Sbjct: 638 DSSTKMAIRAIMIKGFTTGIDDEDIPEEAEKEIQKILDKAEEEVNEIIRKYENGELEPLP 697

Query: 612 GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
           G    ++ EA I  IL + R++AG      L   N   +M++ G++GS +NI+ M ACVG
Sbjct: 698 GRSLEESREAYIMKILGKARDEAGAVAERYLSKDNHAALMARTGARGSLLNITMMSACVG 757

Query: 672 QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
           QQSV G+R   G+ +R LPHF + + +  + GFV +S+  GLS  E+FFH MGGREGLVD
Sbjct: 758 QQSVRGQRIFRGYRNRVLPHFKKGSLDAKSHGFVRSSYKKGLSPIEYFFHAMGGREGLVD 817

Query: 732 TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL 791
            AV+TA +GYM RRLI AL+DL  +YD +VR++ G I+QF+YG+DG+DP+  +   G+ +
Sbjct: 818 QAVRTAQSGYMQRRLINALQDLRAEYDGTVRDSRGTIIQFVYGEDGVDPSKAD--HGKAV 875

Query: 792 NFDRLLMKVKA 802
           + D+++ KVKA
Sbjct: 876 DIDKIITKVKA 886


>gi|241301792|ref|XP_002407502.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
           scapularis]
 gi|215497181|gb|EEC06675.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
           scapularis]
          Length = 1937

 Score =  514 bits (1323), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 286/727 (39%), Positives = 439/727 (60%), Gaps = 33/727 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L    V  +F+++++ +C++L +  R   P+ ++IT + VPP+A+RP+V+M GS  N++
Sbjct: 215 VLTAERVWEIFRQVSEEECQILGMDPRFTKPDWMLITVLPVPPLAVRPAVVMFGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L +      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKANNELIRNEQSGAAAHIIAETLKMLQFHVATLVDNEMPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLK K+GR RGNL GKRV+++ RTVI+PDPNL+I EV +P  +A+ LT+PE V
Sbjct: 335 PLKSIKQRLKSKEGRIRGNLMGKRVDFSARTVITPDPNLRIDEVGVPRSIAQNLTFPEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  N++K+ + ++ G ++YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ +
Sbjct: 395 TPFNMDKMHELVRRGNNQYPGAKYIIRDNGERIDL--RFHPKASDLHLQCGYRVERHVRN 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+++FNRQP+LH+MS+M HR +++PW T R N SV  PYNADFDGDEMN+HVPQ+ E R
Sbjct: 453 GDIIVFNRQPTLHKMSMMGHRIKVLPWSTFRMNLSVTTPYNADFDGDEMNLHVPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DRAAFSLMCCYMGDG 437
            E   L  V   + TP++ + ++   QD LT+   +T++D F   D+    LM   + DG
Sbjct: 513 AEVEQLAMVPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDIFLEKDQMMTILMFLPIWDG 572

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
                +P PAILKP  LWTGKQ+FS++I  +      VNL     T+ ++      +++ 
Sbjct: 573 ----KMPMPAILKPKPLWTGKQIFSLIIPGN------VNLIRTHSTHPDE------EDDG 616

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
             + + P D  V   + ELISG + K T+G  +   L  V+  + G          +  +
Sbjct: 617 PYKWISPGDTKVLIEHGELISGIVCKKTVG-ASSGSLMHVVFNELGHQVAGLFYGHIQTV 675

Query: 558 SARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
              W+   G +IGI D +  K+   D K  +    ++V +V  K +N+ +L+  PG    
Sbjct: 676 VNAWLLLEGHTIGIGDTIADKQTFIDIKNTIEKAKHDVIDVIEKAHND-ELEPSPGNTLR 734

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           QT E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++ACVGQQ+V 
Sbjct: 735 QTFENQVNRILNDARDKTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVE 794

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ +EFFFH MGGREGL+DTAVKT
Sbjct: 795 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 854

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           A+TGY+ RRLIKA+E + I YD +VRN+   ++Q  YG+DG+D     G + +P     +
Sbjct: 855 AETGYIQRRLIKAMESVMIAYDGTVRNSNSQVIQLRYGEDGLD-----GVAVDPFGGSLI 909

Query: 797 LMKVKAT 803
             + KAT
Sbjct: 910 WSQPKAT 916



 Score =  172 bits (437), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 131/420 (31%), Positives = 202/420 (48%), Gaps = 61/420 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  +    +R+   + + G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T 
Sbjct: 1060 LSTESFEWLLGEIETRFHQSQGQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTL 1119

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENA--ARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN +K+  TP +T  L      +A  A+ V  R+E T L +V  +  I    
Sbjct: 1120 GVPRLKEIINISKKPKTPSLTVFLTGAAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDP 1179

Query: 999  RLASIVIA----------------------------LDMETIQDAHL------------- 1017
               + VIA                            LD + + D  L             
Sbjct: 1180 DPQNTVIAEDQEFVNVYYEMPDFDPTRISTWLLRVELDRKRMTDKKLTMEQIAEKINAGF 1239

Query: 1018 -----CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NVL 1071
                 CI  D   E +V   +I +     K  D  +      VDK +    L  ++ N+L
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRI-MNNDGSKYQDEEEQ-----VDKMEDDVFLRCIEANML 1293

Query: 1072 PMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGID 1125
              + ++GI+ + +V +     + +K   + E GE K   ++ L  +GT L  V+    +D
Sbjct: 1294 SDMTLQGIEAITKVYMHLPTTDNKKRIVLTETGEFKAIAEWLLETDGTSLMRVLSERDVD 1353

Query: 1126 GCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLG 1185
              +T SN I E+   LGIEA R  +  E+N  +   G  ++ RH+ LL D+MT +G ++ 
Sbjct: 1354 PVRTYSNDICEIFAVLGIEAVRKAVEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMA 1413

Query: 1186 ITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            ITR GI + D   LM  SFE+T D L +A+ +   D ++GVSE IIMG    +GTG   +
Sbjct: 1414 ITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDYLKGVSENIIMGQLARMGTGCFDL 1473


>gi|327401232|ref|YP_004342071.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus veneficus
           SNP6]
 gi|327316740|gb|AEA47356.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus veneficus
           SNP6]
          Length = 871

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 302/805 (37%), Positives = 445/805 (55%), Gaps = 66/805 (8%)

Query: 7   EALRKTDL---MKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQ 63
           E  RK DL    + +VK+   +     KCP CG                 D+ ++     
Sbjct: 117 EIERKRDLGQDYEDVVKEVFRITKAVKKCPHCGM----------------DQIEIKFEKP 160

Query: 64  EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNI 120
            F     H              L P ++    +++ D D     +     RPE +++T +
Sbjct: 161 TFFYEGEHR-------------LTPKDIRERLEKIPDDDLPAFGMDPKAVRPEWMVLTVL 207

Query: 121 AVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
            VPP+ +RPS+I++  Q +E+D+T +L  II+ N    +              WE LQ  
Sbjct: 208 PVPPVTVRPSIILETGQRSEDDLTHKLVDIIRINQRFMENKEAGAPQLILEDLWELLQYH 267

Query: 181 VAQYINSDVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
           V  Y++++V G+P +  +  RPL    QRLKGK+GRFRG+LSGKRV ++ RTVISPDPNL
Sbjct: 268 VTTYLDNEVSGIPPARHRSGRPLKTLAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNL 327

Query: 240 KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF 299
            I EV +P  +A  LT P  V++ NIE+ R+ +     ++P A  I  PDG    +    
Sbjct: 328 SINEVGVPKVIAEELTVPFYVTEKNIEEAREYVLR--TEHPKANYIIRPDGRRIRVMDTN 385

Query: 300 RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
           R +LA +L+ G IV+R L+DGD+VLFNRQPSLHRMSIM H  R++P++T R N +VC PY
Sbjct: 386 REELAEKLEPGMIVERQLKDGDIVLFNRQPSLHRMSIMAHYVRVLPYKTFRLNPAVCPPY 445

Query: 360 NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
           NADFDGDEMN+HVPQ+ EA+ EA +LM VQ ++ +P+ G  ++    D ++  +L+TR +
Sbjct: 446 NADFDGDEMNLHVPQSLEAQAEAKVLMAVQEHILSPRFGGPIIGGIHDHISGLYLLTRGE 505

Query: 420 TFYDR-AAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLT 478
             + R  A S++       ++  +LP P   K   LWTGKQLFS LI P  ++     + 
Sbjct: 506 KLFTREEAMSIL-----KALNITELPEPK-YKEKLLWTGKQLFS-LILPDISIEFKAEIC 558

Query: 479 VKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL 538
              +    +                  D +V  +N ELI G + +  +G   K  +   +
Sbjct: 559 QGCEECKKEECEY--------------DAYVIIKNGELICGTIDEKAVG-AFKGIIIDEI 603

Query: 539 LRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVK 598
           +R YG+  T   ++ + +L+ R I   GFS GI D    +E   +  ++ISE  +     
Sbjct: 604 MRKYGSEETKRFIDNMTQLAIRAIMYTGFSFGISDEDIPEEAVSQIHEVISEAEKKVEEL 663

Query: 599 IKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKG 658
           IK Y EG L+  PG    +TLE  I  +L + R+ AGK     L   NS +IM+  G++G
Sbjct: 664 IKAYREGNLEPMPGRSIEETLEMKIMQVLGKARDQAGKIASRFLGMDNSAVIMAVSGARG 723

Query: 659 SPINISQMVACVGQQSVGGRRAPNG--FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
           S +N++QM AC+GQQSV G R   G  + +R+LPHF        A+GFV +S+  GL+  
Sbjct: 724 SMLNLTQMAACIGQQSVRGERIKRGYTYTNRTLPHFKPGDLGAKARGFVRSSYKEGLNPI 783

Query: 717 EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR-NAGGCIVQFLYGD 775
           EFFFH MGGREGLVDTAV+T+ +GY+ RRLI AL+DL ++YD +VR    G +VQF YG+
Sbjct: 784 EFFFHAMGGREGLVDTAVRTSQSGYLQRRLINALQDLKVEYDGTVREQTSGLLVQFRYGE 843

Query: 776 DGMDPANMEGKSGEPLNFDRLLMKV 800
           DG+DP  M+   G+ ++  R++ +V
Sbjct: 844 DGVDP--MKSFRGKSVDVKRIINEV 866


>gi|340517293|gb|EGR47538.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1755

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 292/707 (41%), Positives = 423/707 (59%), Gaps = 39/707 (5%)

Query: 83  TYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS- 138
           T  + P     + +R+++ D   + L+    RPE +IIT + VPP  +RPS+ MDG+ + 
Sbjct: 210 TAPITPEMAHSILRRISEKDLRNMGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 269

Query: 139 --NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
             NE+D+T +L  II+ N +++Q + E +    +    E LQ  VA Y+++D+ G P ++
Sbjct: 270 MRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 329

Query: 197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LT
Sbjct: 330 QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 389

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
           YPE V+ +NI KL Q ++NGP+++PGA+ +   DGT R+     R    + L+ G  V+R
Sbjct: 390 YPETVTPYNIGKLHQLVENGPNEHPGAKYVIRSDGT-RIDLRHHRRAAQISLEYGWKVER 448

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           HL DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+
Sbjct: 449 HLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 508

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM- 434
           EE R E   L  V NN+ +P+    L+   QD L  ++ + R+DTF D+     +  ++ 
Sbjct: 509 EETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKLCRRDTFLDKNQVMNLMLWVP 568

Query: 435 -GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
             DG+    +P PAILKP   WTGKQ+ S++I         ++L   E    + L     
Sbjct: 569 NWDGV----IPQPAILKPRPRWTGKQIISMVIPKE------ISLHAPEDKSDSPL----- 613

Query: 494 DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
                       D  +  +  EL+ G + K  +G+ +  G+  +   + G       +N 
Sbjct: 614 -----------KDAGLLIQAGELMYGLMKKKNIGSASG-GVIHLCYNELGPEGAMAFLNG 661

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPG 612
           + ++   W+  +G SIGI D  P K+  +K +  + ++  EV  +     N  +L+  PG
Sbjct: 662 VQQVVTYWLLQNGHSIGIGDTIPDKQTIEKVQVHIDTQKAEVARLTAMATNN-ELEALPG 720

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
            +   T E  ++  LN  R+ AG     SL   N+ + M++ GSKGS INISQM A VGQ
Sbjct: 721 MNVRATFENKVSMALNMARDQAGTTTQKSLKDSNNAVTMAESGSKGSSINISQMTALVGQ 780

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           Q V G+R P GF  R+LPHF +    P A+GFV NS+  GL+ TEFFFH M GREGL+DT
Sbjct: 781 QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDT 840

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           AVKTA+TGY+ RRL+KALEDL+ QYD +VRN+ G I+QFLYG+DG+D
Sbjct: 841 AVKTAETGYIQRRLVKALEDLNAQYDGTVRNSLGDIIQFLYGEDGLD 887



 Score =  173 bits (438), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 194/401 (48%), Gaps = 52/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1065 NRWDRSFVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKN 1124

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L+     +  A+ ++  +E T L  +    +I     + S  I  D++ ++
Sbjct: 1125 IKTPSMAVYLDTPLAKQEQAKKLRSLVEYTNLRSITSVTEIYYDPDVQSTTIPEDLDMVE 1184

Query: 1014 DAHLCINADIVKESIVQTPKI---------KLKQQHIKVLDF--RKLEIFPP-------- 1054
               L    D  +++I Q  +          KL  + IK+ D   R  E +P         
Sbjct: 1185 SYFLI--PDDSQDTIDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPNDLAVIFSD 1242

Query: 1055 --VDKSKIHFE--------------------LYSLK-NVLPMVIVKGIKTVERV------ 1085
               D+  I                       L  L+ ++L  + ++G+  VER       
Sbjct: 1243 NNADEQVIRIRTIRQDEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGT 1302

Query: 1086 -VIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
             ++   +  +  +K++    ++ L   G+ L+ V+   G+D  +T +N ++++ +  GIE
Sbjct: 1303 RLVEAADGSELALKDDPRCTQWYLDTSGSALREVLAVPGVDPTRTYTNDLWQIIEVFGIE 1362

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
              R  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SF
Sbjct: 1363 GTRAALVKELTAVLAFDGSYVNHRHIALLCDVMTYRGSISAVTRHGINRADTGALMRCSF 1422

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+  G  D   G+SE +++G   P+GTG   +
Sbjct: 1423 EETVEILLEAAATGELDDCRGISENVMLGQMAPMGTGNFDV 1463


>gi|413915236|gb|AFW21480.1| RNA polymerase II largest subunit [Periglandula ipomoeae]
          Length = 1760

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 292/696 (41%), Positives = 424/696 (60%), Gaps = 34/696 (4%)

Query: 94  LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS---NENDITERL 147
           + +R+++ D   + L+    RPE +IIT + VPP  +RPS+ MDG+ +   NE+D+T +L
Sbjct: 219 ILRRISEEDLRHMGLNSDYARPEWMIITVLPVPPPLVRPSISMDGTSTGMRNEDDLTYKL 278

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFV 206
             II+ N +++Q + E +    +    E LQ  VA Y+++D+ G P ++Q   RP+    
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIVGQPRALQKSGRPVKAIR 338

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LTYPE V+ +NI 
Sbjct: 339 ARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIG 398

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL Q ++NGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL DGD ++FN
Sbjct: 399 KLHQLVENGPNEHPGAKYVLRADGT-RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFN 457

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQTEE R E   L 
Sbjct: 458 RQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELC 517

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
            V NN+ + +    L+   QD L  ++ I R+DTF D+     M  ++   DG+    +P
Sbjct: 518 LVPNNIVSTQKNGPLMGIVQDSLAGAYKICRRDTFIDKEMVMNMMLWVPNWDGV----IP 573

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAILKP   WTGKQL S++I    ++            +S +    + + +I ++    
Sbjct: 574 QPAILKPRPRWTGKQLISMVIPKEISL------------HSPESSGGQDNADIPLK---- 617

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  +  ++ EL+ G L K  +G+    G+  +   + G       +N + ++   W+ N
Sbjct: 618 -DTGLLIQSGELLYGLLKKKNIGSA-AGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLN 675

Query: 565 HGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
           +G SIGI D  P K+  +K +  + ++  EV  +   +    +L+  PG +   T E  +
Sbjct: 676 NGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARL-TAQATANELEALPGMNVRATFENKV 734

Query: 624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
           +  LN  R+ AG     SL   N+ + M++ GSKGS INISQM A VGQQ V G+R P G
Sbjct: 735 SMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFG 794

Query: 684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
           F  R+LPHF +    P A+GFV NS+  GL+ +EFFFH M GREGL+DTAVKTA+TGY+ 
Sbjct: 795 FKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQ 854

Query: 744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           RRL+KALEDLS +YD +VRN+ G I+QFLYG+DG+D
Sbjct: 855 RRLVKALEDLSERYDGTVRNSLGDIIQFLYGEDGLD 890



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 196/401 (48%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1068 NRWDRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKD 1127

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +      +   +  A+ ++  +E T L  +    +I     +    IA DM+ ++
Sbjct: 1128 IKTPSMAVYFNTHLGTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIAEDMDMVE 1187

Query: 1014 -------------------------DAHLCINADIVKESIVQTPKIKL------------ 1036
                                     D    ++ +I  + + Q  K +             
Sbjct: 1188 SYFLIPDDTQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAVIFSDNN 1247

Query: 1037 -KQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK---NVLPMVIVKGIKTVER-------- 1084
              +Q I++   R  +      + +I  ++   +   ++L  + ++G+  VER        
Sbjct: 1248 ADEQVIRIRTIRTDDDKDEDGEKRIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGTR 1307

Query: 1085 VVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
            +VI +   E  K K++ +  ++ L   G+ L+ V+  +G+D  +T +N ++++ +  GIE
Sbjct: 1308 LVIDDDGAEIAK-KDDDKCTQWYLDTSGSALREVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            AAR  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSF 1426

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+  G  D   G+SE +++G   P+GTG   +
Sbjct: 1427 EETVEILLEAAATGELDDCRGISENVMLGQLAPMGTGNFDV 1467


>gi|37726869|gb|AAO38801.1| DNA-dependent RNA polymerase II largest subunit [Gregarina
           niphandrodes]
          Length = 1020

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 278/692 (40%), Positives = 416/692 (60%), Gaps = 18/692 (2%)

Query: 91  VLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL +F ++++ D +++       RP  ++I ++ V P  +RP V   GS  +E+D+T +L
Sbjct: 132 VLAVFSKISEHDMKLMGFDITFARPSWMVIQSMLVIPPCVRPYVHF-GSDRSEDDLTIKL 190

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPF-SMQVARPLSGFV 206
             I++ N  LQ+      +          LQ  VA ++N+++ G+P  + +  +P+    
Sbjct: 191 LDIVKVNRQLQKYESTGVAQHVVQETVAVLQYHVATFMNNEIPGLPVATTKSKKPMKSIR 250

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
           +RLKGK+GR RGNL GKRV+++ RTVI+ DPNL+I +V +P  +A  LTYPE V+  N+E
Sbjct: 251 ERLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQIDQVGVPRSIAMNLTYPELVTSMNLE 310

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
            LR+ + NGP  +PGAR I   DGT   L     N   ++L+ G  V+RH+ DGD VLFN
Sbjct: 311 MLRKAVSNGPSVWPGARYITRTDGTRFDLRHCAGNPAVLQLEPGYKVERHVRDGDYVLFN 370

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+MSIM HR +++PW T R N SV  PYNADFDGDEMN+H+ Q++E R E   L 
Sbjct: 371 RQPSLHKMSIMGHRVKVLPWSTFRCNLSVTAPYNADFDGDEMNLHLAQSQETRAEIKQLC 430

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTP 446
            V   + +P+  + ++   QD L     +T +DTF DR     +C ++ D  D + LP P
Sbjct: 431 LVPKQIVSPQGNKPVMGIVQDSLLGLAKMTSRDTFIDRPIMMGLCLWVRD-WDGI-LPAP 488

Query: 447 AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPND 506
            I KP +LWTGKQL +++++       +V L      + +  IR + D E     +  ND
Sbjct: 489 VIYKPEKLWTGKQLITMILKAGQRGANHVTL------HRDGAIRLKQDNEY----LSAND 538

Query: 507 GFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHG 566
           G +  ++SE ++G + K T G  +   L  VL    G   T   ++   K+   W+ + G
Sbjct: 539 GRIIIQDSEHVAGIICKRTAGT-SSGSLIHVLWHQCGPEKTKDFLSSTQKVVNNWLVSIG 597

Query: 567 FSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDI 626
           F++G+ D+    +   +  + + ++Y   +  I+   +GKL+ +PG    ++ E  +   
Sbjct: 598 FTVGVSDIVADSKTVSRVKEALDDSYVKVDELIRLARQGKLETQPGKSLLESFENRVNQE 657

Query: 627 LNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFID 686
           LN+ RE +G+    +L  +N+ + M   GSKGS INISQ++ACVGQQ+V G+R P GF D
Sbjct: 658 LNQAREASGRIAAENLTNKNNIISMVNAGSKGSTINISQIMACVGQQNVEGKRIPFGFQD 717

Query: 687 RSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRL 746
           RSLPHF R    P ++GFV NS+ SGL   E FFH MGGREG++DTA KT++TGY+ RRL
Sbjct: 718 RSLPHFLRHDYGPDSRGFVYNSYLSGLLPHELFFHAMGGREGIIDTACKTSETGYIQRRL 777

Query: 747 IKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
           +KA+ED+ + YD +VRN+ G IVQFLYG+DGM
Sbjct: 778 VKAMEDVLVTYDRTVRNSNGEIVQFLYGEDGM 809


>gi|397135952|gb|AFO11471.1| RNA polymerase I, partial [Yarrowia lipolytica]
          Length = 870

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 295/714 (41%), Positives = 430/714 (60%), Gaps = 43/714 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  +L +FK ++  DC+ L L+E   RPE LIIT + VPP  +RPS+ ++ +   E+
Sbjct: 14  LLTPAEILNVFKHISSEDCQRLGLNEDYARPEWLIITTLPVPPPPVRPSIAINDTARGED 73

Query: 142 DITERLKRIIQTNASLQ---QELVEAN--SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  I++ NA++Q   QE   A+  + F+SL     LQ  VA Y+++D+ G P ++
Sbjct: 74  DLTYKLADILKANANVQRCEQEGAPAHVVNEFESL-----LQYHVATYMDNDIAGQPQAL 128

Query: 197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ +V +P  +AR LT
Sbjct: 129 QKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPRSIARTLT 188

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
           YPE V+  NI KL + ++NGP+++PGA+ +   D   R+     +    + L+ G  V+R
Sbjct: 189 YPEIVTPFNIHKLTEYVRNGPNEHPGAKYV-IRDTGERIDLRYHKRAGDIALQYGWKVER 247

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           HL D D VLFNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+
Sbjct: 248 HLMDNDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 307

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCY 433
           EE R E   L  V   + +P++ + ++   QD L     +T +D+F  YD     L    
Sbjct: 308 EETRAELSQLCMVPLQIVSPQSNKPVMGIVQDTLCGVRKMTIRDSFIDYDMVMNILFWIP 367

Query: 434 MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
             DG+    +PTPAILKP  LWTGKQ+ S+ I    +++ +                   
Sbjct: 368 NWDGV----VPTPAILKPKPLWTGKQMVSMCIPKGIHLQRF------------------- 404

Query: 494 DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
           D++  I   CP D  +Y  + +++ G + K T+G     GL   ++R+ G+         
Sbjct: 405 DDQNPI--TCPKDNGMYIIDGQIMWGVVDKKTIG-ATGGGLVHTIMREKGSAVCCNFFGT 461

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
           + K+   W+ ++GFSIGI D            + I E  +     I E +   L  + G 
Sbjct: 462 IQKVVNFWLLHYGFSIGIGDTIADSATMRDVTETIEEAKKKVKEIILEAHANTLTAEAGM 521

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              ++ E  ++ +LN+ R+ AG++   SL   N+   M   GSKGS INISQM ACVGQQ
Sbjct: 522 TMRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVAGSKGSFINISQMSACVGQQ 581

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
            V G+R P GF DR+LPHF +    P +KGF+ NS+  GL+  EFFFH M GREGL+DTA
Sbjct: 582 MVEGKRVPFGFADRTLPHFCKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTA 641

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           VKTA+TGY+ RRL+KALED+ +QYD +VRN+ G ++QF+YG+DG+D A +E ++
Sbjct: 642 VKTAETGYIQRRLVKALEDVMVQYDGTVRNSLGDVIQFVYGEDGLDGAQVEKQT 695


>gi|406865480|gb|EKD18522.1| DNA-directed RNA polymerase 2 largest subunit [Marssonina brunnea
           f. sp. 'multigermtubi' MB_m1]
          Length = 1738

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 300/745 (40%), Positives = 440/745 (59%), Gaps = 40/745 (5%)

Query: 61  SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLII 117
           +L+ F +      E           + P   L +F+ ++ ++   L LS    RPE +II
Sbjct: 187 ALELFGTWKVPKDEDNEGAQPEKRAITPEMALNVFRSISTSEIFDLGLSNDYARPEWMII 246

Query: 118 TNIAVPPIAIRPSVIMDGSQSN---ENDITERLKRIIQTNASLQQELVEANSAFKSLAGW 174
           T + VPP  +RPS+ MDG+      E+D+T +L  II+ N +++Q   E + A   L+ +
Sbjct: 247 TVLPVPPPPVRPSISMDGTSQGMRGEDDLTYKLGDIIRANGNVRQAQQEGSPA-HILSDF 305

Query: 175 ETL-QVEVAQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTV 232
           E L Q  VA Y+++D+ G P ++Q   RP+     RLKGK+GR RGNL GKRV+++ RTV
Sbjct: 306 EKLLQYHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTV 365

Query: 233 ISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA 292
           I+ DPNL + EV +P  +AR LTYPE V+ +NI KL Q ++NGP+++PGA+ +   DG+ 
Sbjct: 366 ITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVVRSDGS- 424

Query: 293 RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 352
           R+     +   A+ L+ G  V+RH+ DGD ++FNRQPSLH+ S+M HR R+MP+ T R N
Sbjct: 425 RIDLRHHKRAGAISLEYGWKVERHIVDGDFIVFNRQPSLHKESMMGHRVRVMPYSTFRLN 484

Query: 353 ESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSS 412
            SV +PYNADFDGDEMN+HVPQTEE R E + L  V  N+ +P+    L+   QD L   
Sbjct: 485 LSVTSPYNADFDGDEMNLHVPQTEETRAEIMNLCMVPLNIVSPQRNGPLMGIVQDTLAGV 544

Query: 413 FLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHAN 470
           + + R+D F  +      L+     DG+    +P PAILKP   WTGKQ+ S++I    N
Sbjct: 545 YKMCRRDCFVTKEHLMNILLWVPEWDGV----IPQPAILKPRPRWTGKQVVSMIIPKIVN 600

Query: 471 MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGN 530
           +                 +  +G E+  ++    +DG +     EL+ G + K  +G   
Sbjct: 601 LN----------------MPNDGREDAPLK----DDGLL-VHEGELMYGLMAKKNIG-AT 638

Query: 531 KDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK-KGKLIS 589
             G+  ++  + G+ A     N   ++   W+ ++GFSIGI D  P K    K +G + +
Sbjct: 639 SGGIIHIIFNEMGSDAAMAFFNGCQRVVNYWLLHNGFSIGIGDTVPDKSTIAKIEGAIGA 698

Query: 590 ENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPL 649
           +  EV  +        +L+  PG +  +T E+ ++  LN  R+ AG    GSL   N+ +
Sbjct: 699 QKEEVAKLTAMA-TANQLESLPGMNVRETFESQVSKALNTARDQAGTKTEGSLKDNNNAV 757

Query: 650 IMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSF 709
            M++ GSKGS INISQM A VGQQSV G+R P GF  R+LPHF +    P ++GFV NS+
Sbjct: 758 TMARSGSKGSTINISQMTALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSY 817

Query: 710 YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIV 769
             GL+ TEFFFH M GREGL+DTAVKTA+TGY+ RRL+KALED+  +YD +VRN+ G IV
Sbjct: 818 LRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIV 877

Query: 770 QFLYGDDGMDPANMEGKSGEPLNFD 794
           QF+YG+DG+D  ++E +  + +N D
Sbjct: 878 QFVYGEDGLDGVHIEKQKVDHINLD 902



 Score =  189 bits (480), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 126/401 (31%), Positives = 202/401 (50%), Gaps = 54/401 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A  
Sbjct: 1066 NRFMRALVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATN 1125

Query: 955  ISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ- 1013
            I TP +   LE N N+ +A++++  +E T L  V  + +I     + S  I  D++ ++ 
Sbjct: 1126 IKTPSMVVYLEGNGNQESAKLLRSAVEHTNLRSVTAATEIYHDPDIQSTTIEDDLDMVES 1185

Query: 1014 ------DAH------------LCINAD--IVKESIVQTPKIKLKQQHIKVLDFRKLEIFP 1053
                  D+H            L ++    + K   V+    K+K+ + K L      IF 
Sbjct: 1186 YFIIPDDSHDAPDNQSRWLLRLVLDRQKMLDKGLRVEDVATKIKEAYQKDLAV----IFS 1241

Query: 1054 P------------VDKSKIHFELYSLK----------NVLPMVIVKGIKTVERVVIAEKE 1091
                         +++S   FE   ++          ++L  + ++G+K V+R  + ++ 
Sbjct: 1242 DNNAEEQVIRIRMINQSDSKFEDDDIEQDIMLKRLEAHILDTLTLRGVKGVDRAFLNKET 1301

Query: 1092 KEKRK-------VKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
            K            K++   +++ L   GT L  V+   G+D  +T SNH  +V Q  GIE
Sbjct: 1302 KLIETPAGGLLASKDDPRCEEWYLDTSGTELGDVLTIPGVDTTRTYSNHFIQVFQVFGIE 1361

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            A R  ++ E+ + +   G  ++ RH+ LL D+MT RG ++ ITR GI + D   LM  SF
Sbjct: 1362 ATRSALMRELTQVLAFDGSYVNHRHLALLVDVMTSRGHLMAITRHGINRADTGALMRCSF 1421

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T + L  A+  G  D   G+SE +++G   P+GTG L +
Sbjct: 1422 EETVEILLEAAAVGELDDCRGISENVMLGQLAPMGTGELDV 1462


>gi|426201955|gb|EKV51878.1| hypothetical protein AGABI2DRAFT_215454, partial [Agaricus bisporus
           var. bisporus H97]
          Length = 1800

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 303/721 (42%), Positives = 433/721 (60%), Gaps = 43/721 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNE 140
           ++ P  V  +FK+MTD+D  +L LS+   RPE +I+T + VPP  +RPS+ +DG +  +E
Sbjct: 206 LITPSEVYTVFKKMTDSDLHLLGLSDEYARPEWMILTVMPVPPPPVRPSIAVDGGAMRSE 265

Query: 141 NDITERLKRIIQTNASL---QQELVEAN--SAFKSLAGWETLQVEVAQYINSDVRGVPFS 195
           +D+T +L  II+ +A++   +QE   A+  S F+ L     LQ  VA Y+++D+ G+P +
Sbjct: 266 DDLTYKLGDIIKASANVRRCEQEGAPAHVISEFEQL-----LQFHVATYMDNDIAGIPQA 320

Query: 196 MQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARIL 254
           +Q + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ EV +P  +A  L
Sbjct: 321 LQKSGRPVKALRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPKSIAMNL 380

Query: 255 TYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
           T+PERV+ +NI  L++ ++NGP  YPGAR +    G    L  ++  +    L+ G IV+
Sbjct: 381 TFPERVTPYNITYLQELVRNGPTTYPGARYVVRDTGERIDL--RYNKRADAFLQYGWIVE 438

Query: 315 RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
           RHL+DGD VLFNRQPSLH+MS+M HR R+MP+ T R N SV  PYNADFDGDEMNMHVPQ
Sbjct: 439 RHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQ 498

Query: 375 TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM 434
           +EE R E   +  V   + +P+  + ++   QD L      T +D F D      +  ++
Sbjct: 499 SEETRAELSQVAWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDCFLDWNHVQNILLWV 558

Query: 435 GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
            D    +  PTPAILKP  LWTGKQ+ S+ I    N+         +   SN +      
Sbjct: 559 PDWDGTI--PTPAILKPKPLWTGKQILSMTIPRGINIH-----RSPDPKSSNPVF----- 606

Query: 495 EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                     +DG +   N ELI G + K T+G   + GL  V+ R+ G   T      L
Sbjct: 607 ----------DDGML-IENGELIFGIVDKKTVG-ATQGGLVHVVFREKGPEVTRQLFTGL 654

Query: 555 AKLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
            ++   W+ ++GFSIGI D +   K +S     +I    EV  + I++    +L+ KPG 
Sbjct: 655 QRVVNFWLFHNGFSIGIGDTIADMKTMSYITQTIIERKAEVTKI-IEDATHDRLKPKPGM 713

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              ++ E+++   LN  R+ +G+     L   N+   M   GSKGS INISQM  CVGQQ
Sbjct: 714 TIRESFESMVERQLNLARDTSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQ 773

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
           SV GRR P GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH M GREGL+DTA
Sbjct: 774 SVEGRRIPFGFRHRTLPHFTKDDFTPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTA 833

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
           VKTA+TGY+ RRL+KALED+ + YD +VRN+ G ++QF+YG+DGMD A +E ++ E    
Sbjct: 834 VKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMDGAFIEKQTIETFGL 893

Query: 794 D 794
           +
Sbjct: 894 N 894



 Score =  186 bits (473), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 128/411 (31%), Positives = 201/411 (48%), Gaps = 46/411 (11%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T +  +  +    +++    V  G   G + AQSIGEP TQMTL TFH+AGV+S N+T 
Sbjct: 1044 LTREAFDWVLGEVEAKFNQSVVHPGEMCGTLSAQSIGEPATQMTLNTFHYAGVSSKNVTL 1103

Query: 941  GVPRIKEIINGAKRISTPIITAELE--CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN A  I TP +T  LE   + +   A+ V+  +  T L  V  +++I    
Sbjct: 1104 GVPRLKEIINVATNIKTPSLTVYLEPEISVSPTLAKNVQQELAYTSLRTVTAAVEIWYDP 1163

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKI-------------KLKQQHI--KV 1043
               S +I  D   ++      + +   +  +Q+P +             KL  Q++  ++
Sbjct: 1164 DPTSTIIEEDSVFVESFFAIPDEETESKLHLQSPWLLRLEMDRAKMIDRKLMMQYVANRI 1223

Query: 1044 LDFRKLEIF--------------------PPVDKSKI-----HFELYSLKN-VLPMVIVK 1077
             D  K ++F                    P  D            L  L+N +L  V ++
Sbjct: 1224 GDSFKTDLFVIWSEDNSEKLIIRCRVLGSPDKDDEGYGSVEEDIFLRQLENTMLNSVSLR 1283

Query: 1078 GIKTVERVVIAEKEK---EKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHI 1134
            G+K + RV + E +K         E G+ K++ L  +G  L+ VM  +G+D  +T SN  
Sbjct: 1284 GVKGINRVFLTEADKVMIRPDGTIETGKDKEWVLETDGVNLKTVMCIDGVDFTRTYSNSC 1343

Query: 1135 FEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKM 1194
             E+   LGIEAAR  I+ E+   ++  G  ++ RH+ LL DLMT RG ++ ITR GI + 
Sbjct: 1344 VEIFNVLGIEAARAAIMKELRSVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRA 1403

Query: 1195 DKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            D   LM  SFE+T + L  A+  G  D   G++E ++ G   P+GTG  ++
Sbjct: 1404 DTGALMRCSFEETVEVLMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFEV 1454


>gi|284162089|ref|YP_003400712.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus profundus DSM
           5631]
 gi|284012086|gb|ADB58039.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus profundus DSM
           5631]
          Length = 871

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 300/792 (37%), Positives = 444/792 (56%), Gaps = 63/792 (7%)

Query: 18  IVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKA 77
           I+K     A    KCP CG                             A A+    E   
Sbjct: 131 IIKDVYRRAKAVKKCPHCG-----------------------------AEAVEVKFEKPT 161

Query: 78  AVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMD 134
              +  + L P++V    +++ D D  VL +     RPE L+IT + VPP+ +RPS+I++
Sbjct: 162 FYYIDEHKLTPLDVREWLEKIPDDDLPVLGIDPKACRPEWLVITVLPVPPVTVRPSIILE 221

Query: 135 GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAG-WETLQVEVAQYINSDVRGVP 193
             Q +E+D+T +L  II+ N     E  EA +    L   WE LQ  V  YIN++V G+P
Sbjct: 222 TGQRSEDDLTHKLVDIIRINQRFL-ENKEAGAPHLILEDLWELLQYHVTTYINNEVSGIP 280

Query: 194 FS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMAR 252
            +  +  RPL    QRLKGK+GRFRG+LSGKRV ++ RTVISPDP + I EV +P  +A 
Sbjct: 281 PARHRSGRPLKTLAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPCISINEVGVPKEIAE 340

Query: 253 ILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCI 312
            LT P  V++ NIE+ R+ I     ++P A  +  PDG    +    R +LA +L+ G I
Sbjct: 341 ELTVPIYVTERNIEEAREYILR--TEHPKANYVIRPDGRRIRVMDTNREELAEKLEPGWI 398

Query: 313 VDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHV 372
           V+R L+DGD+VLFNRQPSLHRMSIM H  R++P +T R N +VC PYNADFDGDEMN+HV
Sbjct: 399 VERQLKDGDIVLFNRQPSLHRMSIMAHYVRVLPGKTFRLNPAVCPPYNADFDGDEMNLHV 458

Query: 373 PQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCC 432
           PQ+ EA+ EA +LM VQ ++ +P+ G  ++    D ++  +L+TR +  + +        
Sbjct: 459 PQSIEAQAEAKILMAVQQHILSPRFGGPIIGGIHDHISGLYLLTRGEKLFSKEE----VM 514

Query: 433 YMGDGMDRVDLPTPAILKPVE-LWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRT 491
           Y+    D  +LP P ++K  +  WTGKQ+FS ++ P   +     +              
Sbjct: 515 YLLGPFDLKELPEPKVVKDGKPYWTGKQIFSAIL-PDVTLEFKAEI-------------C 560

Query: 492 EGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCM 551
           +G  E + E+ C  D +V  +N ELI G + +  +G   K  +   ++R YG       +
Sbjct: 561 KGCNECKKES-CEYDAYVIIKNGELIRGTIDEKAVG-AFKGIIIDEIVRKYGNDVAKKFI 618

Query: 552 NRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
           + +  L+ R I   GF+IGIDD    +E   +  ++I+E  +     IK Y EG L+  P
Sbjct: 619 DDMTHLAIRAIMLTGFTIGIDDEDLPEEAIAQVKEIIAEAEKKVIDLIKAYREGNLEPMP 678

Query: 612 GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
           G    +TLE +I   L R R+ AG+     L + N  +IM+  G++GS +N++QM AC+G
Sbjct: 679 GRSLEETLEMMIMRELGRARDMAGRVAEKFLGYNNPAVIMAVSGARGSMLNLTQMSACIG 738

Query: 672 QQSVGGRRAPNG--FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
           QQSV G R   G  + +R+LPHF        A+GFV +S+  GL+  EFFFH MGGREGL
Sbjct: 739 QQSVRGERINRGYTYTNRTLPHFKPGDLSARARGFVESSYKRGLNPIEFFFHAMGGREGL 798

Query: 730 VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR-NAGGCIVQFLYGDDGMDPANMEGKSG 788
           VDTA +T+ +GY+ RR+I AL+D+ ++YD +VR      +VQF YG+DG+DP  M+   G
Sbjct: 799 VDTACRTSISGYLQRRMINALQDIKVEYDGTVREQTSETVVQFRYGEDGVDP--MKSFRG 856

Query: 789 EPLNFDRLLMKV 800
           + ++ DR++ ++
Sbjct: 857 KSVDIDRIVKEI 868


>gi|410906965|ref|XP_003966962.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like,
           partial [Takifugu rubripes]
          Length = 1628

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 294/710 (41%), Positives = 426/710 (60%), Gaps = 32/710 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +  +L +     RPE +I+T + VPP+A+RP+V+M GS  N++
Sbjct: 213 LLSPERVHEIFKRISDEEDIILGMDSKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQD 272

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 273 DLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 332

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A  +T+PE V
Sbjct: 333 PLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIV 392

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ D
Sbjct: 393 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQIGYKVERHMCD 450

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 451 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 510

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDG 437
            E   L  V   + TP++   ++   QD LT+    T++D F DR      LM     DG
Sbjct: 511 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLDRGEVMNLLMFLSTWDG 570

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
                +P PAILKP  LWTGKQ+FS++I  H N+          +T+S     T  D+E 
Sbjct: 571 ----KMPQPAILKPRALWTGKQIFSLIIPGHINVI---------RTHS-----THPDDED 612

Query: 498 R--IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
               + + P D  V   N ELI G L K +LG  +   L  +   + G   T    + + 
Sbjct: 613 SGPYKHISPGDTKVIVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQ 671

Query: 556 KLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
            +   W+   G SIGI D +   K   D +  +     +V  V  K +N  +L+  PG  
Sbjct: 672 TVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNN-ELEPTPGNT 730

Query: 615 AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
             QT E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++A VGQQ+
Sbjct: 731 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQN 790

Query: 675 VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
           V G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAV
Sbjct: 791 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 850

Query: 735 KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           KTA+TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+   N+E
Sbjct: 851 KTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE 900



 Score =  170 bits (430), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 125/391 (31%), Positives = 193/391 (49%), Gaps = 51/391 (13%)

Query: 905  GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL 964
            G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +KR  TP +T  L
Sbjct: 1082 GEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFL 1141

Query: 965  ECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINAD 1022
                  +A R   +  R+E T L +V  +  I       + V+  D E +   +   + D
Sbjct: 1142 LGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVEEDQEWVNVYYEMPDFD 1201

Query: 1023 IVKESIVQTPKIKLKQQHIK---------------------------------VLDFRKL 1049
            + + S     +I+L ++H+                                  VL  R +
Sbjct: 1202 VTRISPWLL-RIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1260

Query: 1050 --------EIFPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRK---V 1097
                    E    VDK      L  ++ N+L  + ++GI+ + +V +   + + +K   +
Sbjct: 1261 NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1320

Query: 1098 KENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEI 1154
             E+GE K   ++ L  +G  L  V+  + +D  +T SN I E+   LGIEA R  +  E+
Sbjct: 1321 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1380

Query: 1155 NETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA 1214
               +   G  ++ RH+ LL D MT RG ++ ITR GI + D   LM  SFE+T D L  A
Sbjct: 1381 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA 1440

Query: 1215 SVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            S +G  D ++GVSE I++G   P GTG   +
Sbjct: 1441 SSHGECDPMKGVSENIMLGQLAPAGTGCFDL 1471


>gi|409082995|gb|EKM83352.1| hypothetical protein AGABI1DRAFT_65857 [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 1785

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 303/721 (42%), Positives = 433/721 (60%), Gaps = 43/721 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNE 140
           ++ P  V  +FK+MTD+D  +L LS+   RPE +I+T + VPP  +RPS+ +DG +  +E
Sbjct: 206 LITPSEVYTVFKKMTDSDLHLLGLSDEYARPEWMILTVMPVPPPPVRPSIAVDGGAMRSE 265

Query: 141 NDITERLKRIIQTNASL---QQELVEAN--SAFKSLAGWETLQVEVAQYINSDVRGVPFS 195
           +D+T +L  II+ +A++   +QE   A+  S F+ L     LQ  VA Y+++D+ G+P +
Sbjct: 266 DDLTYKLGDIIKASANVRRCEQEGAPAHVISEFEQL-----LQFHVATYMDNDIAGIPQA 320

Query: 196 MQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARIL 254
           +Q + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ EV +P  +A  L
Sbjct: 321 LQKSGRPVKALRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPKSIAMNL 380

Query: 255 TYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
           T+PERV+ +NI  L++ ++NGP  YPGAR +    G    L  ++  +    L+ G IV+
Sbjct: 381 TFPERVTPYNITYLQELVRNGPTTYPGARYVVRDTGERIDL--RYNKRADAFLQYGWIVE 438

Query: 315 RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
           RHL+DGD VLFNRQPSLH+MS+M HR R+MP+ T R N SV  PYNADFDGDEMNMHVPQ
Sbjct: 439 RHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQ 498

Query: 375 TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM 434
           +EE R E   +  V   + +P+  + ++   QD L      T +D F D      +  ++
Sbjct: 499 SEETRAELSQVAWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDCFLDWNHVQNILLWV 558

Query: 435 GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
            D    +  PTPAILKP  LWTGKQ+ S+ I    N+         +   SN +      
Sbjct: 559 PDWDGTI--PTPAILKPKPLWTGKQILSMTIPRGINIH-----RSPDPKSSNPVF----- 606

Query: 495 EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                     +DG +   N ELI G + K T+G   + GL  V+ R+ G   T      L
Sbjct: 607 ----------DDGML-IENGELIFGIVDKKTVG-ATQGGLVHVVFREKGPEVTRQLFTGL 654

Query: 555 AKLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
            ++   W+ ++GFSIGI D +   K +S     +I    EV  + I++    +L+ KPG 
Sbjct: 655 QRVVNFWLFHNGFSIGIGDTIADMKTMSYITQTIIERKAEVTKI-IEDATHDRLKPKPGM 713

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              ++ E+++   LN  R+ +G+     L   N+   M   GSKGS INISQM  CVGQQ
Sbjct: 714 TIRESFESMVERQLNLARDTSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQ 773

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
           SV GRR P GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH M GREGL+DTA
Sbjct: 774 SVEGRRIPFGFRHRTLPHFTKDDFTPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTA 833

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
           VKTA+TGY+ RRL+KALED+ + YD +VRN+ G ++QF+YG+DGMD A +E ++ E    
Sbjct: 834 VKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMDGAFIEKQTIETFGL 893

Query: 794 D 794
           +
Sbjct: 894 N 894



 Score =  186 bits (472), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 128/411 (31%), Positives = 201/411 (48%), Gaps = 46/411 (11%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T +  +  +    +++    V  G   G + AQSIGEP TQMTL TFH+AGV+S N+T 
Sbjct: 1044 LTREAFDWVLGEVEAKFNQSVVHPGEMCGTLSAQSIGEPATQMTLNTFHYAGVSSKNVTL 1103

Query: 941  GVPRIKEIINGAKRISTPIITAELE--CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN A  I TP +T  LE   + +   A+ V+  +  T L  V  +++I    
Sbjct: 1104 GVPRLKEIINVATNIKTPSLTVYLEPEISVSPTLAKNVQQELAYTSLRTVTAAVEIWYDP 1163

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKI-------------KLKQQHI--KV 1043
               S +I  D   ++      + +   +  +Q+P +             KL  Q++  ++
Sbjct: 1164 DPTSTIIEEDSVFVESFFAIPDEETESKLHLQSPWLLRLEMDRAKMIDRKLMMQYVANRI 1223

Query: 1044 LDFRKLEIF--------------------PPVDKSKI-----HFELYSLKN-VLPMVIVK 1077
             D  K ++F                    P  D            L  L+N +L  V ++
Sbjct: 1224 GDSFKTDLFVIWSEDNSEKLIIRCRVLGSPDKDDEGYGSVEEDIFLRQLENTMLNSVSLR 1283

Query: 1078 GIKTVERVVIAEKEK---EKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHI 1134
            G+K + RV + E +K         E G+ K++ L  +G  L+ VM  +G+D  +T SN  
Sbjct: 1284 GVKGINRVFLTEADKVMIRPDGTIETGKDKEWVLETDGVNLKTVMCIDGVDFTRTYSNSC 1343

Query: 1135 FEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKM 1194
             E+   LGIEAAR  I+ E+   ++  G  ++ RH+ LL DLMT RG ++ ITR GI + 
Sbjct: 1344 VEIFNVLGIEAARAAIMKELRSVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRA 1403

Query: 1195 DKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            D   LM  SFE+T + L  A+  G  D   G++E ++ G   P+GTG  ++
Sbjct: 1404 DTGALMRCSFEETVEVLMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFEV 1454


>gi|397135902|gb|AFO11446.1| RNA polymerase I, partial [Millerozyma farinosa]
          Length = 872

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 284/715 (39%), Positives = 424/715 (59%), Gaps = 45/715 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  +L +FK ++  DC  L  +E   RPE ++IT +AVPP  +RPS+  + +   E+
Sbjct: 14  LLTPSEILSVFKHISPDDCFRLGFNEDYARPEWMLITVLAVPPPPVRPSIAFNDTARGED 73

Query: 142 DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  I++ N ++Q+  ++ +     S F++L     LQ  VA Y+++D+ G P ++
Sbjct: 74  DLTFKLADILKANINVQRLEMDGSPQHVISEFEAL-----LQFHVATYMDNDIAGQPQAL 128

Query: 197 Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q   RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +A+ L+
Sbjct: 129 QKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLS 188

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
           YPE V+ +NI +L + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+
Sbjct: 189 YPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVE 246

Query: 315 RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
           RHL D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 247 RHLMDNDPVLFNRQPSLHKMSMMSHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 306

Query: 375 TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
           + E R E   +  V   + +P++ + ++   QD L     +T +DTF  YD+    L   
Sbjct: 307 SPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKLTLRDTFIEYDQVMNMLYWI 366

Query: 433 YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
            + DG+    +P PAI+KP  LWTGKQL S+ I    +++ +                 +
Sbjct: 367 PVWDGV----IPPPAIVKPKPLWTGKQLLSMAIPKGIHLQRF----------------DD 406

Query: 493 GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
           G        + P D  +   + E++ G + K T+G+    GL   ++R+ G    +    
Sbjct: 407 GK-----NLLSPKDSGMLIVDGEIMFGVVDKKTVGS-TGGGLIHTVMREKGPQVCAQLFG 460

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
            + K+   W+ ++GFSIGI D              I +        I +  + KL  +PG
Sbjct: 461 SIQKVVNYWLLHNGFSIGIGDTIADASTMKNVTTTIEDAKRKVQEIINDAQQNKLDPEPG 520

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
               ++ E  ++ +LN+ R+ AG++   +L   N+   M   GSKGS INISQM ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 580

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           Q V G+R P GF DR+LPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DT
Sbjct: 581 QIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           AVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D   +E ++
Sbjct: 641 AVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQA 695


>gi|412992604|emb|CCO18584.1| RNA polymerase II largest subunit [Bathycoccus prasinos]
          Length = 1667

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 294/723 (40%), Positives = 429/723 (59%), Gaps = 28/723 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
            L + K ++D DC +L L     RP+  I+  + +PP  +RPSV  D S  +E+D+T +L
Sbjct: 162 ALQILKNISDEDCRLLGLDPEHARPDWFILQVMPIPPPPVRPSVSFDASTRSEDDLTVKL 221

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM-QVARPLSGFV 206
             I++TN +LQ++      A       E LQ  +  ++++ V G P +M +  RP+    
Sbjct: 222 MEIVRTNKNLQRQEQNGAPAHVVDEFAELLQYHIMTFMDNTVAGQPRAMTRSGRPIKSIS 281

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
           +RLKGK GR RGNL GKRV+++ RTVI+PDPNL + ++ +P  +A  +TYPE V+ +NI+
Sbjct: 282 ERLKGKAGRIRGNLMGKRVDFSARTVITPDPNLMLDQLGVPWSIALNMTYPETVTPYNID 341

Query: 267 KLRQCIQNGPDKYPG---ARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVV 323
           +L + ++NGP   PG   A+ I   DG  R+     +     +L+ G  V+RH+++ DVV
Sbjct: 342 ELTRLVENGPHPPPGETGAKYIIREDG-QRLDLRFLKKASEKKLEFGYRVERHMKNDDVV 400

Query: 324 LFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAL 383
           LFNRQPSLH+MSIM HR RIMP+ T R N SV  PYNADFDGDEMNMH+PQ+ E R E  
Sbjct: 401 LFNRQPSLHKMSIMGHRVRIMPYSTFRMNISVTPPYNADFDGDEMNMHLPQSYETRAEVA 460

Query: 384 LLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDL 443
            LM V   + +P+  + ++A  QD L     +T ++TF  +  F  +  ++ +   +V  
Sbjct: 461 ELMMVPKMIVSPQANKPVMAIVQDTLLGCRKMTSRETFIKKDVFMNIIMWLENWDGKV-- 518

Query: 444 PTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMC 503
           P PAILKP  LWTGKQ+ S+++ PH N+       ++  +++    R   D +  ++   
Sbjct: 519 PKPAILKPEPLWTGKQVLSMML-PHINL-------IRTSSWA----RDADDLDFSVD--- 563

Query: 504 PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIG 563
             D  V     ELI+G L K T+G+G   GL  V   ++G  A    ++ + +L   W+ 
Sbjct: 564 --DTGVRIERGELITGTLCKKTMGSGGG-GLIHVTWEEWGPTAARNLVSEVQRLVNYWLL 620

Query: 564 NHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
           +HGF+ GI D              I++        IK    G+L+ +PG    Q+ E  +
Sbjct: 621 HHGFTCGIIDTIADDGTMRTINDTITKAKSDVKAVIKLAQNGELESQPGMTMQQSFEQKV 680

Query: 624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
             ILN+ R+DAG A   SL   N+  +M Q GSKGS +NISQM ACVGQQ+V G+R P G
Sbjct: 681 NQILNKARDDAGTAAQVSLKDSNNVKMMVQAGSKGSFLNISQMCACVGQQNVEGKRIPYG 740

Query: 684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
           F+DRSLPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT++TGY+ 
Sbjct: 741 FVDRSLPHFSKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 800

Query: 744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKAT 803
           RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD   +E +  + L       + K  
Sbjct: 801 RRLVKAMEDVIVKYDGTVRNSVGDVIQFLYGEDGMDATAVESQKVDTLRLSNAQFEAKFR 860

Query: 804 CPP 806
             P
Sbjct: 861 VDP 863



 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/393 (32%), Positives = 194/393 (49%), Gaps = 48/393 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR++      G  IG + AQSIGEP TQMTL TFHFAGV++ N+T GVPR+KEIIN AK 
Sbjct: 1019 SRFKQALAPPGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKS 1078

Query: 955  ISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T  L  +   +   A+ V+  +E T L  VA   +I     +   VI  D E +
Sbjct: 1079 IKTPSLTIALRKDLASDRGHAKNVQATLEYTTLASVAAMTEIWYDPDVQDTVIPFDKEFV 1138

Query: 1013 QDAHLCINADIVKESIVQTP---KIKLKQQ------------------------HIKVLD 1045
            +  +   + +I    I  +P   +I+L ++                        H+   D
Sbjct: 1139 KSYYEMPDEEIDPNRI--SPWLLRIELNREMMVDKKLSMADVAERISEEFQDDIHVIFND 1196

Query: 1046 ------FRKLEIFPP------VDKSKIHFELYSLK---NVLPMVIVKGIKTVERVVIAEK 1090
                    +L +  P       D+  I  E++  +    +L  + ++GI  +++V I E 
Sbjct: 1197 DNSEKLILRLRLITPEGKAADADEGVIEDEVFLRRIEAQLLSTLALRGIPDIKKVFIREA 1256

Query: 1091 EKEKRKVKENGEKK--KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARI 1148
               +        +K  ++ L  EG  L  VM    +D  +T SNH+ EV   LGIEA R 
Sbjct: 1257 NSTQLNEATGTFEKHSEWMLDTEGCNLLEVMAHPDVDFSRTTSNHLVEVITILGIEAVRN 1316

Query: 1149 CIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTA 1208
             ++ E+   ++  G  ++ RH+ +L ++MT+RG ++ ITR GI + +   LM  SFE+T 
Sbjct: 1317 ALLKELRGVIEFDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRAETGPLMRCSFEETV 1376

Query: 1209 DHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            D L  A+     D + GVSE I++G   P+GTG
Sbjct: 1377 DILMEAAAFSERDGMTGVSENIMLGQFCPVGTG 1409


>gi|383320561|ref|YP_005381402.1| DNA-directed RNA polymerase, subunit A' [Methanocella conradii
           HZ254]
 gi|379321931|gb|AFD00884.1| DNA-directed RNA polymerase, subunit A' [Methanocella conradii
           HZ254]
          Length = 877

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 289/722 (40%), Positives = 422/722 (58%), Gaps = 28/722 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P +V    + + D D EV  +   + RPE +++T + VPP+ +RPS+ ++  Q +E+D
Sbjct: 170 LMPTDVRDRLEMIPDEDIEVFGMDPKNARPEWMVLTVLPVPPVTVRPSITLESGQRSEDD 229

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N   Q+              WE LQ  V  YI++ V GVP +  +  RP
Sbjct: 230 LTHKLVDIIRINQRFQENRDAGAPQLIIEDLWELLQYHVTTYIDNAVSGVPPARHRSGRP 289

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDPNL I EV +P+ +A+ +T P  V+
Sbjct: 290 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSINEVGVPLSIAKEMTVPMTVT 349

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
             NIE  R+ ++ G + +PGA  ++ PDG    +  K   +LA  L  G  VDR L+DGD
Sbjct: 350 PFNIEVAREYVRRGSENHPGANYVKRPDGRRLKVTDKNCAELAEALDVGWKVDRQLKDGD 409

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +VLFNRQPSLHRMSIM H  ++MP +T R N +VC PYNADFDGDEMN+HVPQ  EA  E
Sbjct: 410 IVLFNRQPSLHRMSIMGHFVKVMPHKTFRLNPAVCAPYNADFDGDEMNLHVPQNMEAMAE 469

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
           A +LM VQ N+ +P+ G  ++    D ++  +L+T+ +  ++ A    +    G      
Sbjct: 470 ARILMLVQQNILSPRFGGPIIGGLHDHISGIYLLTKGNQMFNEAEALDLLRKTG----VR 525

Query: 442 DLPTPAILK-PVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           +LP PA ++  V+ WTGKQ+FS ++ P       +NLT K K   N         E+  +
Sbjct: 526 ELPEPAKVEGGVQYWTGKQIFSTIL-PRT-----LNLTYKAKICENC--------EVCKK 571

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             C  D +V  R+  L +G + +  +G  +   +   +++ Y     +  ++ + +L+ R
Sbjct: 572 EECDKDAYVTIRDGVLKTGVIDEKAIGAFSGK-IVDRIVKTYDEDTAAKFIDDVTRLAIR 630

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
            I   GFS GI D    +E   +   +I E+ +     I+ Y  G+L+  PG    +TLE
Sbjct: 631 AIMKFGFSYGISDTDIPREAKVQTTDVILESEKQVKKLIEAYEAGELEPLPGRTLKETLE 690

Query: 621 AVITDILNRIREDAGKACMGSLPWR--NSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
             I   L + R+ AG      L     NS +IM++ G++GS +N++QM  CVGQQSV G 
Sbjct: 691 LRIMQELAKARDAAGSIAGKHLASEGDNSAVIMARSGARGSFLNLTQMTGCVGQQSVRGE 750

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R   G+ DR+LPHF        A+GFV +S+  GL+ TEFFFH MGGREGLVDTAV+T+ 
Sbjct: 751 RIMRGYSDRTLPHFLPGDLGADARGFVESSYKKGLNPTEFFFHAMGGREGLVDTAVRTSQ 810

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
           +GY+ RRL+ AL+DL ++YD +VR   G IVQF YG+DG+DP  M+   GE +N  +++ 
Sbjct: 811 SGYLQRRLVNALQDLEVKYDGTVRETRGVIVQFEYGEDGVDP--MKSDYGEGVNVRQIVE 868

Query: 799 KV 800
            V
Sbjct: 869 NV 870


>gi|195996443|ref|XP_002108090.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
 gi|190588866|gb|EDV28888.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
          Length = 1784

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 287/702 (40%), Positives = 423/702 (60%), Gaps = 28/702 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           V  +FKR++D D EVL +  R   P+ +IIT + VPP+ +RPSV+M GS  +++D+T +L
Sbjct: 209 VYEIFKRISDEDSEVLGMDPRFARPDWMIITCLPVPPLHVRPSVVMHGSARSQDDLTHKL 268

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+ N +LQ+       A         LQ  V    +++V G+P +MQ + RPL    
Sbjct: 269 ADIIKANNNLQRNESCGAPAHVITEDTRMLQFHVTTLTDNEVPGMPKAMQKSGRPLKSIK 328

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
           QRLKGK+GR RGNL GKRV+++ RTVI+PD NL+I +V +P  +A+ L+YPE V+  NI+
Sbjct: 329 QRLKGKEGRIRGNLMGKRVDFSARTVITPDSNLEIDQVGVPRSIAQTLSYPEIVTPLNID 388

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFR-NQLAVELKSGCIVDRHLEDGDVVLF 325
           ++   ++ GPD YPGA+ +    G    L  KFR ++  + L  G  V+RH+++ D+++F
Sbjct: 389 RMYVLVRRGPDHYPGAKYVIRESGERINL--KFRASRDDLTLHFGDKVERHIQNDDIIVF 446

Query: 326 NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
           NRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+HVPQ+ E+R E   +
Sbjct: 447 NRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLESRAEITEI 506

Query: 386 MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPT 445
             V   + TP++ + ++   QD LT+    T +D F ++     +  ++ +   +  +P 
Sbjct: 507 CMVPRQIVTPQSNKPVMGIVQDSLTAVRKFTMRDVFLEKEVVMNLLMWLPNWNGK--MPQ 564

Query: 446 PAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR--IETMC 503
           PAIL+P ELWTGKQ+FS++I  + N+          +T+S     T  D+E +   + + 
Sbjct: 565 PAILRPKELWTGKQIFSLIIPGNVNLI---------RTHS-----THPDDEDKGPYKFIS 610

Query: 504 PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIG 563
           P D  V   + E+ISG L K TLG  +   L  V+  + G          +  +   W+ 
Sbjct: 611 PGDTKVLIEHGEVISGILCKRTLGTSS-GSLVHVIFNELGHEVARQFYGNIQTVVNNWLL 669

Query: 564 NHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAV 622
             G SIGI D +  +    D +  ++    +V  V  K +N+ +L+  PG    +T E  
Sbjct: 670 IEGHSIGIGDSIADEATYQDIQSTILKAKQDVVEVIEKAHND-ELEPTPGNTLRKTFENQ 728

Query: 623 ITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPN 682
           +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++A VGQQ+V G+R P 
Sbjct: 729 VNRILNDARDKTGSSAQKSLSNFNNFKAMVVAGSKGSKINISQVIAVVGQQNVEGKRIPF 788

Query: 683 GFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYM 742
           GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA+TGY+
Sbjct: 789 GFRHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYI 848

Query: 743 SRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
            RRLIKA+E + + YD +VRNA   ++Q  YG+DG+D + +E
Sbjct: 849 QRRLIKAMEGVMVHYDGTVRNANMQLIQLCYGEDGLDGSAIE 890



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 103/183 (56%), Gaps = 6/183 (3%)

Query: 1069 NVLPMVIVKGIKTVERVVIA---EKEKEKRKVKENGEKK---KYRLLVEGTGLQAVMGAE 1122
            N+L  + ++GI+ + +V +    +  K++  + E GE K   ++ L  +G  LQ V+  +
Sbjct: 1270 NMLSDMTLQGIEQISKVYMHLPLQDSKKRMIINEEGEYKAIQEWILETDGVNLQKVLSVK 1329

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
             +D  K+ SN I E+   LGIEA R  +  E+N  +   G  ++ RH+ LL D+MT RG 
Sbjct: 1330 DVDAVKSTSNDIVEIFSVLGIEAVRKAVEKEMNHVISFDGSYVNYRHLALLCDVMTCRGH 1389

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            ++ ITR GI + +   LM  SFE+T D L +A+ +   D + GVSE I++G    +GTG 
Sbjct: 1390 LMAITRHGINRQEVGALMRCSFEETVDILMDAAFHSETDYLRGVSENIMLGQLSKIGTGC 1449

Query: 1243 LKI 1245
              +
Sbjct: 1450 FDL 1452



 Score = 89.7 bits (221), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 4/119 (3%)

Query: 897  YRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRIS 956
            + +  V+ G  +G + AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN +K+  
Sbjct: 1055 WLIGEVQPGEMVGPLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPK 1114

Query: 957  TPIITAEL---ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            TP +T  L      D E A  V+  R+E T L +V  +  I       + VI+ D E +
Sbjct: 1115 TPSLTVILTGPAARDAEKAKDVL-CRLEHTTLRKVTANTAIYYDPNPKNTVISEDQEFV 1172


>gi|110669635|gb|ABG81912.1| RNA polymerase II largest subunit [Pertusaria dactylina]
          Length = 1015

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 291/709 (41%), Positives = 424/709 (59%), Gaps = 34/709 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QSN 139
           + P   L +F+ ++  D + + LS    RPE +IIT + VPP  +RPS+ +DGS      
Sbjct: 134 ITPQMALNIFRHISTEDIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGSGQGMRG 193

Query: 140 ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA 199
           E+D+T +L  II+ N ++++   E + A       + LQ  VA Y+++D+ G P ++Q +
Sbjct: 194 EDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQYHVATYMDNDIAGQPQALQSS 253

Query: 200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYPE
Sbjct: 254 GRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPE 313

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            V+ +NI KL Q ++NGP+++PGA+ +   D   R+     +    + L+ G  V+RH+ 
Sbjct: 314 TVTPYNIHKLHQLVKNGPNEHPGAKYV-IRDSGERIDLRHHKRAGEISLQYGWKVERHIV 372

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE 
Sbjct: 373 DGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 432

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
           R E   L  V  N+ +P+    L+   QD L   + I R+D F  +     +  ++ D  
Sbjct: 433 RAEVSQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDVFLTKEQIMNVLLWVPD-W 491

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           D V +P PAI+KP   WTGKQ+ S++I P       +NL  K+K                
Sbjct: 492 DGV-IPQPAIIKPRPKWTGKQIISLVI-PEG-----LNLIRKDKK--------------- 529

Query: 499 IETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
            E+  P ND  V+    EL+ G L K T+G  +  GL  ++  + G  A     N    +
Sbjct: 530 -ESFSPINDDGVFVSGGELMYGLLNKKTVG-ASSSGLIHIIYNELGPQAAMNFFNGAQTV 587

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
              W+ ++GFSIGI D  P ++        +++  +      +   E +L+  PG +  +
Sbjct: 588 INYWLLHNGFSIGIGDTIPDRDTIQLIENAVNKRKDEVAELTRSATENELEPLPGMNVRE 647

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E+ ++  LN  R+DAG     SL   N+ + M++ GSKGS INISQM A VGQQSV G
Sbjct: 648 TFESKVSKALNTARDDAGTVTEDSLKDLNNAIQMARSGSKGSSINISQMTAVVGQQSVEG 707

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA
Sbjct: 708 KRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTA 767

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           +TGY+ RRL+KA+ED+  +YD +VRN+ G +VQF+YG+DG+D  ++E +
Sbjct: 768 ETGYIQRRLVKAMEDVMAKYDGTVRNSLGDVVQFVYGEDGLDGGHIESQ 816


>gi|110669612|gb|ABG81901.1| RNA polymerase II largest subunit [Cladonia caroliniana]
          Length = 1016

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 293/707 (41%), Positives = 424/707 (59%), Gaps = 32/707 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS--NE 140
           + P   L +F+ +++ D   L LS+   RPE +IIT + VPP  +RPS+ +DG      E
Sbjct: 135 ITPQMALNIFRHISEEDIATLGLSKDYARPEWMIITVLPVPPPPVRPSISVDGGNGMRGE 194

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA- 199
           +D+T +L  II+ N ++++   E + A       + LQ  VA Y+++D+ G P ++Q + 
Sbjct: 195 DDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSG 254

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYPE 
Sbjct: 255 RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSVARTLTYPET 314

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI KL Q ++NGP+ +PGA+ +   DG  R+     +    + L+ G  V+RH+ D
Sbjct: 315 VTPYNIHKLHQLVKNGPNDHPGAKYVIRADG-ERIDLRHHKRAGEIPLQYGWKVERHIVD 373

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R
Sbjct: 374 GDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 433

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V  N+  P+    L+   QD L   + + R+D F  +     +  ++ D  D
Sbjct: 434 AEVSQLCMVPLNIVPPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPD-WD 492

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
            V +P PAI+KP  LWTGKQ+ S++      M V +NL           +  EG   +R 
Sbjct: 493 GV-IPQPAIVKPRPLWTGKQILSLV------MPVGLNLL---------RVSNEGFSPLR- 535

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
                +DG +     E++ G L K T+G  +  G+  ++  + G  A     N    +  
Sbjct: 536 -----DDGLL-ISGGEIMYGLLNKKTVG-ASGGGVVHIIFNEKGPEAAMKFFNGAQTVVN 588

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
            W+ ++GFSIGI D  P +    K    +++  +   V  K   E +L+  PG +  +T 
Sbjct: 589 YWLLHNGFSIGIGDTIPDRATIGKIEAAVNKQKDEVGVITKSATENELESLPGMNVRETF 648

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E+ ++  LN  R+DAG+    SL   N+   M++ GSKGS INISQM A VGQQSV G+R
Sbjct: 649 ESKVSKALNNARDDAGRVTEESLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKR 708

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+T
Sbjct: 709 IPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 768

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           GY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D  ++E +
Sbjct: 769 GYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDAVHIESQ 815


>gi|302696011|ref|XP_003037684.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
 gi|300111381|gb|EFJ02782.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
          Length = 1750

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 310/771 (40%), Positives = 444/771 (57%), Gaps = 59/771 (7%)

Query: 35  CGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFL 94
           CG+I  +++K               E L+ F       K++K   +    ++ P  V   
Sbjct: 173 CGHIQPVIRK---------------EGLKMF----VQYKKAKDDDDSEKRLIMPSEVYTT 213

Query: 95  FKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRI 150
           FK+M++ D  +L LSE   RPE +I+T + VPP  +RPS+ MDG +Q +E+D+T +L  I
Sbjct: 214 FKKMSEDDLRLLGLSEEYARPEWMILTVLPVPPPPVRPSIAMDGGAQKSEDDLTYKLIEI 273

Query: 151 IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFVQRL 209
           I+ + ++++   E   A       + LQ  VA Y+++D+ G+P +MQ   RP+     RL
Sbjct: 274 IKASGNVRRCEQEGAPAHVVNEFEQLLQFHVATYMDNDIAGIPQAMQKSGRPIKAIRARL 333

Query: 210 KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
           KGK+GR RGNL GKRV+++ RTVI+ DPNL++ +V +P  +A  LT+PERV+ +NI+ L+
Sbjct: 334 KGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPRSIAMNLTFPERVTPYNIDYLQ 393

Query: 270 QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQP 329
             ++NGP  YPGAR +    G    L  ++  +    L+ G IV+RHL+DGD VLFNRQP
Sbjct: 394 TLVRNGPTTYPGARYVVRDTGERIDL--RYNKRADAFLQFGWIVERHLKDGDYVLFNRQP 451

Query: 330 SLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQ 389
           SLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMNMH+PQ+EE R E   +  V 
Sbjct: 452 SLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVP 511

Query: 390 NNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLPTPA 447
             + TP++ + ++   QD L      T +D F D       L+     DG     +P PA
Sbjct: 512 RQIVTPQSNKPVMGIVQDTLCGIRKFTLRDCFMDWNQVQNILLWVPSWDG----SVPIPA 567

Query: 448 ILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDG 507
           ILKP  LWTGKQ+ S++I P       +N+  K +               +  +  P D 
Sbjct: 568 ILKPKPLWTGKQILSMVI-PRG-----INIARKSE---------------KGGSAPPADD 606

Query: 508 FVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGF 567
            ++  N +++ G + K T+G  ++ GL  V+ R+ G  AT      L ++   W+ ++GF
Sbjct: 607 GMFIENGDIMYGVVDKKTVG-ASQGGLIHVVFREKGPEATRTLFTGLQQVVNYWLFHNGF 665

Query: 568 SIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDIL 627
           SIGI D     ++  K  K I +  E       +     L+  PG    +T E+ +   L
Sbjct: 666 SIGIGDTIAGPDVMAKITKTIDQQKEKVKELTADAYWDLLKPMPGMTIRETFESKVNHEL 725

Query: 628 NRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDR 687
           N+ R+DAGK     L   N+   M   GSKGS INISQM  CVGQQSV G+R P GF  R
Sbjct: 726 NKARDDAGKDAQDGLKDDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGKRIPFGFRHR 785

Query: 688 SLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLI 747
           +LPHF +    P ++GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+TGY+ RRL+
Sbjct: 786 TLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMSGREGLIDTAVKTAETGYIQRRLV 845

Query: 748 KALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
           KALED+ + YD +VRN+ G +VQF+YG+DGMD A +E +       D LLM
Sbjct: 846 KALEDVMVCYDGTVRNSLGDLVQFIYGEDGMDGAFIERQG-----VDTLLM 891



 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 132/416 (31%), Positives = 205/416 (49%), Gaps = 53/416 (12%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
             T++  +  I    +++       G   G + AQSIGEP TQMTL TFH+AGV+S N+T 
Sbjct: 1050 FTQQAFDWAIGEVETKFNQSLANPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTL 1109

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN A  I TP  T  L  E   +   A+ V+ ++  T L  V  +++I    
Sbjct: 1110 GVPRLKEIINVAANIKTPAHTIYLVPEKAQSRLGAKAVQEQLAFTTLRTVTAAVEIWYDP 1169

Query: 999  RLASIVIALDMETI---------------------QDAHLC-------------INADIV 1024
               + VI  D E I                     Q + L              ++ D V
Sbjct: 1170 DTRNTVIEEDQEMIGSFWDIADADPGSPEYEKYQRQSSWLLRLVLDRRAMIDRKVDVDYV 1229

Query: 1025 KESIVQTPKIKL----KQQHIKVLDFRKLEIFPPVDKSKIHFE-------LYSLKN-VLP 1072
               I+   K  L     Q   +     +  +    +K++   E       L  L+N +L 
Sbjct: 1230 ANQIINNFKTDLVVMWSQDASEDTMIIRCRVVSGEEKTEDGLEDIEEDVFLRQLENTMLN 1289

Query: 1073 MVIVKGIKTVERVVIAEKEKEKRKVKENG---EKKKYRLLVEGTGLQAVMGAEGIDGCKT 1129
             ++++G+K ++RV ++EK+K    + ++G   ++K++ L   GT L+AVM  +G+D  +T
Sbjct: 1290 SIVLRGVKGIDRVFLSEKDKTH--INDDGTVGQEKEWVLETNGTNLKAVMCVDGVDYTRT 1347

Query: 1130 KSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRF 1189
             SN+  EV  TLGIEA R  ++ E+   ++  G  ++ RH+ LL DLMT RG ++ ITR 
Sbjct: 1348 SSNNCVEVFNTLGIEAGRQSVLKELKSCIEFDGSYVNYRHIALLCDLMTQRGTLMAITRH 1407

Query: 1190 GIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            GI + D   LM  SFE+T + L  A+  G  D   GV+E ++ G   P+GTG   +
Sbjct: 1408 GINRSDTGALMRCSFEETVEILMEAAAVGEKDDCHGVAENVMFGQMAPMGTGAFDV 1463


>gi|358387637|gb|EHK25231.1| hypothetical protein TRIVIDRAFT_85034 [Trichoderma virens Gv29-8]
          Length = 1757

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 298/724 (41%), Positives = 431/724 (59%), Gaps = 50/724 (6%)

Query: 76  KAAVNVA---------TYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVP 123
           KAA  VA         T  + P     + +R++++D   + L+    RPE +IIT + VP
Sbjct: 194 KAAFEVAQEDGPKRKETAPITPEMAHSILRRISESDLRNMGLNSDYARPEWMIITVLPVP 253

Query: 124 PIAIRPSVIMDGSQS---NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
           P  +RPS+ MDG+ +   NE+D+T +L  II+ N +++Q + E +    +    E LQ  
Sbjct: 254 PPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYH 313

Query: 181 VAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
           VA Y+++D+ G P ++Q + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ D NL
Sbjct: 314 VATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANL 373

Query: 240 KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF 299
            + EV +P  +AR LTYPE V+ +NI KL Q ++NGP+++PGA+ +   DGT R+     
Sbjct: 374 SLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRSDGT-RIDLRHH 432

Query: 300 RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
           R    + L+ G  V+RHL DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PY
Sbjct: 433 RRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPY 492

Query: 360 NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
           NADFDGDEMN+HVPQ+EE R E   L  V NN+ +P+    L+   QD L  ++ I R+D
Sbjct: 493 NADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRD 552

Query: 420 TFYDRAAFSLMCCYM--GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNL 477
           TF D+     +  ++   DG+    +P PAILKP   WTGKQ+ S++I         ++L
Sbjct: 553 TFLDKNQVMNLMLWVPNWDGI----IPQPAILKPRPRWTGKQIISMVIPKE------ISL 602

Query: 478 TVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
              E    + L                 D  +  +  EL+ G + K  +G+ +  G+  +
Sbjct: 603 HAPEDKSESPL----------------RDTGLLIQAGELMYGLMKKKNIGSASG-GVIHL 645

Query: 538 LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK-KGKLISENYEVCN 596
              + G       +N + ++ + W+  +G SIGI D  P K+  +K +  + ++  EV  
Sbjct: 646 CYNELGPEGAMAFLNGVQQVVSYWLLQNGHSIGIGDTIPDKQTIEKVQVHIDTQKAEVAR 705

Query: 597 VK-IKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCG 655
           +  +   NE  L+  PG +   T E  ++  LN  R+ AG     SL   N+ + M++ G
Sbjct: 706 LTAMATANE--LEALPGMNVRATFENKVSMALNMARDQAGTTTQKSLKDSNNAVTMAESG 763

Query: 656 SKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSA 715
           SKGS INISQM A VGQQ V G+R P GF  R+LPHF +    P A+GFV NS+  GL+ 
Sbjct: 764 SKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTP 823

Query: 716 TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGD 775
           +EFFFH M GREGL+DTAVKTA+TGY+ RRL+KALEDL+ QYD +VRN+ G I+QFLYG+
Sbjct: 824 SEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLNAQYDGTVRNSLGDIIQFLYGE 883

Query: 776 DGMD 779
           DG+D
Sbjct: 884 DGLD 887



 Score =  174 bits (440), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 195/402 (48%), Gaps = 53/402 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1065 NRWDRSFVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKN 1124

Query: 955  ISTPIITAELECN-DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L+     +  A+ ++  +E T L  +    +I     + S  IA D++ ++
Sbjct: 1125 IKTPSMAVYLDTPLAKQEQAKKLRSLVEYTNLRSITSVTEIYYDPDVQSTTIAEDVDMVE 1184

Query: 1014 DAHLCINADIVKESIVQTPKI---------KLKQQHIKVLDF--RKLEIFPP-------- 1054
               L    D  +++I Q  +          KL  + IK+ D   R  E +P         
Sbjct: 1185 SYFLI--PDDSQDTIDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPNDLAVIFSD 1242

Query: 1055 --VDKSKIHFE---------------------LYSLK-NVLPMVIVKGIKTVERVVIAEK 1090
               D+  I                        L  L+ ++L  + ++G+  VER  + + 
Sbjct: 1243 NNADEQVIRIRTIRQNDEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKG 1302

Query: 1091 EK-------EKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
             +        +  +K++    ++ L   G+ L+ V+   G+D  +T +N +++V +  GI
Sbjct: 1303 TRLVESVDGSELALKDDIRCTQWYLDTSGSALREVLAVPGVDPTRTYTNDLWQVIEVFGI 1362

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            E  R  ++ E+   +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  S
Sbjct: 1363 EGTRAALVKELTAVLAFDGSYVNHRHIALLCDVMTYRGSISAVTRHGINRADTGALMRCS 1422

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            FE+T + L  A+  G  D   G+SE +++G   P+GTG   +
Sbjct: 1423 FEETVEILLEAAATGELDDCRGISENVMLGQMAPMGTGHFDV 1464


>gi|321464303|gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
          Length = 1895

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 286/736 (38%), Positives = 430/736 (58%), Gaps = 28/736 (3%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L    V  +FK ++D +C +L +     RP+ +I+T + VPP+A+RP+V+M GS  N++
Sbjct: 209 VLTAERVWEIFKHISDEECAILGMDPKYARPDWMIVTCLPVPPLAVRPAVVMHGSARNQD 268

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  LQ+      +A       + LQ  VA  +++D  G+P + Q + R
Sbjct: 269 DLTHKLADIVKANNELQRNEQSGAAAHIIAENIKMLQFHVATMVDNDSPGLPRAQQKSGR 328

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           P+     RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ +T+PE V
Sbjct: 329 PIKSVKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIV 388

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           +  NIEK+++ +Q G  +YPGA+ I   +G  R+          + L+ G  V+RH+ DG
Sbjct: 389 TPFNIEKMQELVQRGNSQYPGAKYIIRENGD-RIDLRFHPKSSDLHLQCGYKVERHIRDG 447

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D+V+FNRQP+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R 
Sbjct: 448 DLVVFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRA 507

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGM 438
           E   +      + TP+  + ++   QD L +   +T++D F ++      LM     DG 
Sbjct: 508 EVENIHVTPRQIITPQANKPVMGIVQDTLCAVRKMTKRDVFLEKEQMMNLLMFLPTWDG- 566

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
               +P PAILKP   WTGKQLF+++I  + NM          +T+S      + ++E  
Sbjct: 567 ---KMPQPAILKPRPQWTGKQLFTLIIPGNVNMI---------RTHST---HPDDEDEGP 611

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
            + + P D  V   N EL+ G L K TLG  +   L  ++  + G          +  + 
Sbjct: 612 YKWISPGDTKVMVENGELVMGILCKKTLG-ASAASLLHIIFMELGHEVCGRFYGNIQTVI 670

Query: 559 ARWIGNHGFSIGIDDV--QPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
             W+   G SIGI D    P+  L D +  +     +V  V  K +N+ +L+  PG    
Sbjct: 671 NNWLLYEGHSIGIGDTIADPQTYL-DIQATIKKAKEDVIEVIQKSHND-ELEPTPGNTLR 728

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           QT E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V 
Sbjct: 729 QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVE 788

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKT
Sbjct: 789 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT 848

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           A+TGY+ RRLIKA+E + + YD +VRN+ G ++Q  YG+DG+   ++E ++   +     
Sbjct: 849 AETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLSAESVEFQTMPTVKLSNK 908

Query: 797 LMKVKATCPPAGQRYL 812
             + K    P+ +RYL
Sbjct: 909 AFEKKFKFEPSNERYL 924



 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/415 (31%), Positives = 205/415 (49%), Gaps = 51/415 (12%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R++  + + G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1054 LSSEAFEWLIGEIETRFQQAQAQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1113

Query: 941  GVPRIKEIINGAKRISTPIITAEL---ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            GVPR+KEIIN +K    P +T  L      D E A  V+  R+E T L +V  +  I   
Sbjct: 1114 GVPRLKEIINISKNPKAPSLTVFLTGAAARDAEKAKNVL-CRLEHTTLRKVTANTAIYYD 1172

Query: 998  SRLASIVIALDMETIQ----------------------DAHLCINADIVKESIVQ----- 1030
                + VI+ D E +                       D     +  +  E I +     
Sbjct: 1173 PDPQNTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKRLTMEQIAEKVNAG 1232

Query: 1031 -------------TPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NVLPMVIV 1076
                           K+ L+ + +   D +  E    VDK +    L  ++ N+L  + +
Sbjct: 1233 FGDDLNCIFNDDNAEKLVLRIRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTL 1292

Query: 1077 KGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTK 1130
            +GI+++ +V +   + +++K   V E GE K   ++ L  +GT L  V+    +D  +T 
Sbjct: 1293 QGIESIGKVYMHLPQTDQKKRIVVTEAGEFKAIAEWLLETDGTQLMRVLSERDVDPVRTY 1352

Query: 1131 SNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFG 1190
            SN I E+   LGIEA R  +  E+N  ++ +G+ ++ RH+ LL D+MT +G ++ ITR G
Sbjct: 1353 SNDICEIFAVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHG 1412

Query: 1191 IQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            I + D   LM  SFE+T D L  A+ +   D + GVSE II+G    +GTG   +
Sbjct: 1413 INRQDTGALMRCSFEETVDVLLEAAGHAEVDPLRGVSENIILGQLPRMGTGCFDL 1467


>gi|120561197|gb|ABM26984.1| RNA polymerase II largest subunit, partial [Sclerotinia
           sclerotiorum]
          Length = 1011

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 297/728 (40%), Positives = 431/728 (59%), Gaps = 34/728 (4%)

Query: 74  ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPS 130
           E   AV      + P   L +F+ M+  + + + L+    RPE +IIT + VPP  +RPS
Sbjct: 116 EDGEAVQPDKRQITPDMALNVFRSMSTAEIQDVGLNADYARPEWMIITVLPVPPPPVRPS 175

Query: 131 VIMDGS---QSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYIN 186
           + MDG+      E+D+T +L  II+ N +++Q   E  S    L  +ETL Q  VA Y++
Sbjct: 176 ISMDGTGQGMRGEDDLTYKLGDIIRANGNVRQAQQEG-SPQHILQDFETLLQYHVATYMD 234

Query: 187 SDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVA 245
           +D+ G P ++Q + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV 
Sbjct: 235 NDIAGQPPALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVG 294

Query: 246 IPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAV 305
           +P  +ARILTYPE V+  NI+KL Q ++NGPD++PGA+ +   DGT R+     +   A+
Sbjct: 295 VPRSIARILTYPETVTPLNIDKLHQLVKNGPDEHPGAKYVIRSDGT-RIDLRHHKRAGAI 353

Query: 306 ELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDG 365
            L+ G  V+RH+ DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDG
Sbjct: 354 SLEYGWKVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDG 413

Query: 366 DEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRA 425
           DEMN+HVPQT E R E + L  V  N+ +P+    L+   QD L   + I R+D F  + 
Sbjct: 414 DEMNLHVPQTYETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKICRRDVFITKE 473

Query: 426 AFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS 485
               +  ++ D  D V +P PAILKP   WTGKQ+ S++I                    
Sbjct: 474 HLMNILLWVPD-WDGV-IPQPAILKPRPRWTGKQIVSLII-------------------- 511

Query: 486 NKLIRTEGDEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA 544
            K++ +    + +     P ND     +  +L+ G + K  +G  + +G+  ++  + G 
Sbjct: 512 PKIVNSYNASKDKEHLHAPLNDDGCLIQEGQLMYGLMAKKNVG-ASGNGIVHIVFNEQGP 570

Query: 545 HATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNE 604
            A     N   ++   W+ ++GFSIGI D  P KE  ++  K I++        +++   
Sbjct: 571 DAAMAFFNGCQRVINYWLLHNGFSIGIGDTIPNKETIEQIEKAIAKQKAEVTELVEKATS 630

Query: 605 GKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINIS 664
            +L+  PG +  +T E+ ++  LN  R  AG      L   N+ + M++ GSKGS INIS
Sbjct: 631 NELESLPGMNVRETFESQVSKALNEARNTAGTKTEDGLLDINNAVQMARSGSKGSTINIS 690

Query: 665 QMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMG 724
           QM A VGQQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M 
Sbjct: 691 QMSALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMA 750

Query: 725 GREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           GREGL+DTAVKTA+TGY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D    E
Sbjct: 751 GREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVIFE 810

Query: 785 GKSGEPLN 792
            +  + +N
Sbjct: 811 NQKMDHIN 818


>gi|123979340|gb|ABM81495.1| RNA polymerase II largest subunit [Tornabea scutellifera]
          Length = 993

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 299/712 (41%), Positives = 426/712 (59%), Gaps = 48/712 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQ--SNE 140
           + P   L +F+ M+  D + L LS    RPE +IIT + VPP  +RPS+ +DG    + E
Sbjct: 115 ITPKMALAVFQAMSTDDIKKLGLSNDYARPEWMIITVLPVPPPPVRPSIKVDGGDGPTGE 174

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA 199
           +D+T +L  II+ N ++++   E   A   +  +ETL Q  VA Y+++D  G P ++Q +
Sbjct: 175 DDLTYKLGDIIRANGNVRRGETEGTPA-HIIEEFETLLQFHVATYMSNDTAGQPQALQKS 233

Query: 200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYPE
Sbjct: 234 GRPVKAIRARLKGKEGRVRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPE 293

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            V+ +NI KL Q ++NGP+++PGAR +   DG  R+     R    + L+ G  V+RH+ 
Sbjct: 294 TVTPYNIHKLHQLVKNGPNEHPGARYV-IRDGGERIDLRFHRRAGDLVLQYGWKVERHIV 352

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE 
Sbjct: 353 DGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 412

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYMGD 436
           R E   L  V  N+ +P+    L+   QD L   + I R+D F  +++    L+     D
Sbjct: 413 RAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLNHEQVMNILLWVPEWD 472

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
           G+    +P PA+LKP  LWTGKQ+ S++I    N+       VK   Y+   ++ EG   
Sbjct: 473 GI----IPQPAVLKPKPLWTGKQIVSLVIPSGLNL-------VKGSDYAP--LKDEG--- 516

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
                       ++    EL+ G L K  +G     G+  ++  + G+ A     N    
Sbjct: 517 ------------IFVAGGELMFGLLNKKVVGAA-MGGIIHIVYNEKGSEAAMNFFNGAQA 563

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYN----EGKLQLKPG 612
           +   W+ ++GFSIGI D  P +E      +LI E       ++ E      E +L   PG
Sbjct: 564 VVNYWLLHNGFSIGIGDTIPDRETI----RLIEEAVNTQKQEVTEITQMATESRLDTLPG 619

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
            +  +T E+ ++  LN+ R+DAG     SL   N+   M++ GSKGS INISQM A VGQ
Sbjct: 620 MNVRETFESRVSKALNKARDDAGTVTEDSLKDLNNATQMARSGSKGSTINISQMTAVVGQ 679

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           QSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DT
Sbjct: 680 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 739

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           AVKTA+TGY+ RRL+KALED+  +YD ++RN+ G IVQF+YG+DG+D A++E
Sbjct: 740 AVKTAETGYIQRRLVKALEDVMAKYDGTIRNSLGDIVQFVYGEDGLDGAHIE 791


>gi|20090127|ref|NP_616202.1| DNA-directed RNA polymerase subunit A' [Methanosarcina acetivorans
           C2A]
 gi|19915107|gb|AAM04682.1| DNA-directed RNA polymerase, subunit A [Methanosarcina acetivorans
           C2A]
          Length = 880

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 279/704 (39%), Positives = 412/704 (58%), Gaps = 31/704 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  +   F+ + D D  V+ +   + RPE +I+T + VPP+ +RPS+ ++  Q +E+D
Sbjct: 175 LTPTEIRDRFENVPDEDIRVIGMDPKNARPEWMILTVLPVPPVTVRPSITLESGQRSEDD 234

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N   Q+              WE LQ  V  + ++ V G+P +  +  RP
Sbjct: 235 LTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQYHVTTFFDNSVSGIPPARHRSGRP 294

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDPNL I EV +P+ +AR LT P  V+
Sbjct: 295 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSINEVGVPMPIARTLTIPAVVT 354

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
             NIE+L+  ++NG D +PGA  +   DG    +    ++ LA +L+ G  V+R L+DGD
Sbjct: 355 PRNIEQLKVYVRNGEDIHPGANYVFRSDGRRIKVTNMNKDDLAEKLEFGWTVERQLKDGD 414

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
            VLFNRQPSLH+MSIM H  +++P +T R N +VC PYNADFDGDEMNMH  QTEE+R E
Sbjct: 415 TVLFNRQPSLHKMSIMAHSVKVLPNKTFRLNPAVCPPYNADFDGDEMNMHALQTEESRAE 474

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR-KDTFYDRAAFSLMCCYMGDGMDR 440
           A +LM VQ N+ +P+ G  ++    D ++  FL+TR ++      A+ ++          
Sbjct: 475 AKILMQVQENILSPRFGGPIIGGIHDHISGLFLLTRFENHISSHEAYDILRKSRAR---- 530

Query: 441 VDLPTPAIL----KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
            +LP PA      KP   WTGKQ+FS ++    NM     +     ++ +   + E    
Sbjct: 531 -NLPEPAGHDEDGKP--FWTGKQIFSQILPETLNMEFAAQVC----SHCDTCKKEE---- 579

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
                 CPND +V  RN ELI G + +A +G   K  +   ++++ G  A +  ++ + K
Sbjct: 580 ------CPNDAYVVIRNGELILGTIDEAAIG-AFKGKIQDRIIKEVGPEAGARFVDDMTK 632

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           L+ R I   G S GI D    KE   +  +++ +  +     IK Y   +L+  PG    
Sbjct: 633 LAIRSIMRTGLSFGIADEDIPKEARIQINEVLGKAEDAVQNLIKSYQNKELEPLPGRTLD 692

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           +T+E  I   L + R++ G      +   NS +IM++ G++GS +N++QM ACVGQQ+V 
Sbjct: 693 ETIEMSIMQKLGKARDETGGIADSHMGLENSAVIMARSGARGSILNLTQMAACVGQQAVR 752

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G R   G+  R+LPHF        A GFV  S+ SGL+ TE+FFH +GGREGLVDTAV+T
Sbjct: 753 GERIRRGYAGRTLPHFQEGDLGSDAHGFVKASYKSGLNPTEYFFHAIGGREGLVDTAVRT 812

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDP 780
           + +GY+ RRL+ AL+DL +QYD +VR+  G +VQF YG+DG++P
Sbjct: 813 SQSGYLQRRLVNALQDLEVQYDLTVRDTRGVLVQFKYGEDGINP 856


>gi|397135798|gb|AFO11394.1| RNA polymerase I, partial [Starmera amethionina]
          Length = 870

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 302/745 (40%), Positives = 445/745 (59%), Gaps = 61/745 (8%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  +L +F+ ++ +DC  L  +E   RPE LII+ + VPP  +RPS+  + +Q  E+
Sbjct: 13  VLSPSEILNVFRHISSSDCHKLGFNEEYARPEWLIISVLPVPPPPVRPSISFNDTQRGED 72

Query: 142 DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  I++ N ++Q+  ++ +     + F+SL     LQ  VA Y+++D+ G P ++
Sbjct: 73  DLTYKLSDIMKANINVQKLEMDGSPQHVINEFESL-----LQFHVATYMDNDIAGQPQAL 127

Query: 197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q + RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +AR LT
Sbjct: 128 QKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELGQVGVPKSIARTLT 187

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
           YPE V+  NI+KL + + NGP+++PGA+ +IR       + Y K    +A  L+ G  V+
Sbjct: 188 YPETVTPFNIKKLTELVMNGPNEHPGAKYIIRDTGDRIDLRYNKRAGDIA--LQYGWKVE 245

Query: 315 RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
           RHL DGD VLFNRQPSLH+MS+MCHR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 246 RHLMDGDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 305

Query: 375 TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
           +EE R E L +  V   + +P++ +  +   QD L     +T +D+F  YD+    L   
Sbjct: 306 SEETRAELLNICAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFIDYDQMMNILYWI 365

Query: 433 YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
              DG+    +P P ILKP  LWTGKQ+ S+ I    +++ +                  
Sbjct: 366 KDWDGV----IPQPTILKPRPLWTGKQMLSMAIPKGIHLQRF------------------ 403

Query: 493 GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
            DE   +  + P D  +   + ++I G + K T+G  N  GL   ++R+ G    +    
Sbjct: 404 -DEGTTL--ISPKDNGMLIIDGKIIFGVVDKKTVGATNG-GLIHTVMREKGPTECANLFG 459

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKG-KLISENYEVCNVKIKEYN----EGKL 607
           +L K+   W+ ++GFSIGI D      ++D    K I++   +  VK+ E      + KL
Sbjct: 460 KLQKVVNFWLLHNGFSIGIGDT-----IADASTMKEITDAIALAKVKVDEVTLEVQQNKL 514

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
             K G    ++ E  +   LN  R+ AG++   +L   N+   M   GSKGS INI+QM 
Sbjct: 515 TAKHGMTLRESFEDNVIRYLNEARDKAGRSAEVNLKGLNNVKQMVSAGSKGSFINIAQMS 574

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           ACVGQQSV G+R   GF DR+LPHF +    P +KGFV NS+  GL+  EF+FH MGGRE
Sbjct: 575 ACVGQQSVEGKRIAFGFADRTLPHFAKDDYSPESKGFVENSYLRGLTPQEFYFHAMGGRE 634

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GL+DTAVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D  ++E +S
Sbjct: 635 GLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGGIIQFVYGEDGLDAGHVEKQS 694

Query: 788 -----GEPLNFDRLLMKVKATCPPA 807
                GE   F++   +V  T P A
Sbjct: 695 IDTIPGEDAAFEK-RYRVDLTNPKA 718


>gi|296476824|tpg|DAA18939.1| TPA: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Bos
           taurus]
          Length = 1323

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +     RPE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 76/135 (56%), Gaps = 2/135 (1%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L      +A R   +  R+E T L +V  +  I       S V+A D E +
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1013 QDAHLCINADIVKES 1027
               +   + D+ + S
Sbjct: 1194 NVYYEMPDFDVARIS 1208


>gi|121701053|ref|XP_001268791.1| DNA-dependent RNA polymerase II largest subunit, putative
           [Aspergillus clavatus NRRL 1]
 gi|119396934|gb|EAW07365.1| DNA-dependent RNA polymerase II largest subunit, putative
           [Aspergillus clavatus NRRL 1]
          Length = 1765

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 298/715 (41%), Positives = 421/715 (58%), Gaps = 39/715 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QS 138
           ++ P+  L +F+ ++  D  ++ LS    RPE +IIT + VPP  +RPSV++ GS   Q 
Sbjct: 215 VITPLMALNVFRTISQEDVRIMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSTSGQR 274

Query: 139 NENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVP 193
            E+D+T +L  II+ N ++Q+   E         F+SL     LQ  VA Y+++D+ G P
Sbjct: 275 GEDDLTYKLAEIIRANQNVQRCEQEGAPEHVVREFESL-----LQYHVATYMDNDIAGQP 329

Query: 194 FSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMAR 252
            +MQ + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +P  +AR
Sbjct: 330 KAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 389

Query: 253 ILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCI 312
            LTYPE V+ +NIEKL+Q + NGP+++PGAR I   +G  R+     R     +L  G  
Sbjct: 390 TLTYPEVVTPYNIEKLQQLVANGPNEHPGARYIVRDNG-ERIDLRHARRAGGQQLLYGWK 448

Query: 313 VDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHV 372
           V+RHL DGDV+LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMN+HV
Sbjct: 449 VERHLMDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRMNLSVTTPYNADFDGDEMNLHV 508

Query: 373 PQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCC 432
           PQ+EE+R E   L  V  N+ +P+    L+   QD L   + I R+D F  +     +  
Sbjct: 509 PQSEESRAELSQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLTKEQVMNIML 568

Query: 433 YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
           ++ D  D V +P PAILKP   WTGKQ+ S+ +    N                 L+R E
Sbjct: 569 WVPD-WDGV-IPPPAILKPRPRWTGKQMISMALPSGLN-----------------LLRVE 609

Query: 493 GDEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCM 551
            D     E   P  DG V     +L+ G L K T+G  +  G+   +  +YG        
Sbjct: 610 KDNSSLAEKFSPLTDGGVLIHGGQLMYGMLSKKTVG-ASGGGVIHTIFNEYGPETAVAFF 668

Query: 552 NRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
           N    +   W+ ++GFSIGI D  P      +    + E  +          E  L+  P
Sbjct: 669 NGAQTIVNYWLLHNGFSIGIGDTIPDAVTIQRIENCVRERKQEVEAITASATENTLEPLP 728

Query: 612 GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
           G +  +T E+ ++  LN  R++AG     SL   N+ + M++ GSKGS INISQM A VG
Sbjct: 729 GMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVG 788

Query: 672 QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
           QQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+D
Sbjct: 789 QQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLID 848

Query: 732 TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           TAVKTA+TGY+ R+L+KALE++ ++YD +VRN+ G ++QF+YG+DG+D  ++E +
Sbjct: 849 TAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQFIYGEDGLDGGHIENQ 903



 Score =  191 bits (484), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 130/400 (32%), Positives = 198/400 (49%), Gaps = 57/400 (14%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+       G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A  
Sbjct: 1073 SRFAKAAASPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATN 1132

Query: 955  ISTPIITA---ELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
            I TP +T      +C+D E +A+ ++  +E T L  V ++ +I     + + VI  D + 
Sbjct: 1133 IKTPSMTVYQMPSKCHDKE-SAKQLRSAVEHTSLRSVTEATEIYYDPDIQTTVIENDRDM 1191

Query: 1012 IQDAHLCINADIVKES----------IVQTPKIKLKQQHIKVLDFRKLEIFPP------- 1054
            ++ ++  I  D+   S          I+  PK+  K   ++ +  R  + +P        
Sbjct: 1192 VE-SYFIIPEDVTDASSRQSKWLLRIILSRPKLLDKGLTVQDVAARIKQAYPKDIAVIFS 1250

Query: 1055 ---VDKSKIHFE-----------------LYSLK----NVLPMVIVKGIKTVERVVIAEK 1090
                D+  I                      +LK    ++L  + ++G++ VER  I   
Sbjct: 1251 DNNADEQVIRIRQIQDYKEDEEHDDDIEYDVTLKKLEQHLLDTLTLRGVQGVERAFI--N 1308

Query: 1091 EKEKRKVKENGEK---------KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTL 1141
            EK K +V E+G           K++ L   G+ L  V+   G+D  +T SN   EV +  
Sbjct: 1309 EKSKVRVLEDGSLFASKTDPLCKEWVLETSGSSLGEVLAVPGVDASRTYSNQFIEVFEVF 1368

Query: 1142 GIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLML 1201
            GIEAAR  ++ E+ + +   G  ++ RH+ LL D+MT RG +  +TR GI + D   LM 
Sbjct: 1369 GIEAARTAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMR 1428

Query: 1202 ASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             SFE+T + L  A+  G  D   GVSE +I+G   P GTG
Sbjct: 1429 CSFEETVEILLEAAAFGELDDCRGVSENLILGQMAPAGTG 1468


>gi|358337430|dbj|GAA28785.2| DNA-directed RNA polymerase II subunit RPB1 [Clonorchis sinensis]
          Length = 1877

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 288/701 (41%), Positives = 423/701 (60%), Gaps = 27/701 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL +FKR++D DC  L    R   P+ +IIT + VPP+A+RP+V+M G+  N++D+T +L
Sbjct: 182 VLEVFKRISDEDCLSLGFDPRYARPDWMIITVLPVPPLAVRPAVVMYGATRNQDDLTHKL 241

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQ-VARPLSG 204
             II+ N  L+++  E N A   +   +   LQ  V    ++DV G+P ++Q   RPL  
Sbjct: 242 ADIIKANNQLRRD--EQNGAASHILAEDIRMLQFHVTTMTDNDVPGLPKAIQKSGRPLKS 299

Query: 205 FVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHN 264
              RLKGK GR RGNL GKRV+++ RTVI+ DPNL + +V +P  +A+ LTYPE V+  N
Sbjct: 300 IKTRLKGKAGRIRGNLMGKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPENVTQFN 359

Query: 265 IEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLEDGDVV 323
           I+ L++ +QNG   YPGA+ I   +G    L  ++  ++A + L+ G +V+RH+ + D V
Sbjct: 360 IDHLQKLVQNG-TLYPGAKFIVRENGDRIDL--RYHPKVADLTLQVGYVVERHMLNDDYV 416

Query: 324 LFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAL 383
           +FNRQP+LH+MS+MCHR +++PW T R N SV +PYNADFDGDEMN+H+PQ+ E + E  
Sbjct: 417 IFNRQPTLHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAEIS 476

Query: 384 LLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDL 443
            L  V   + TP+  + +++  QD LT+   +T++D F +RA    +  Y+     R  +
Sbjct: 477 QLARVSRLVITPQANKPVMSIVQDTLTAVNKMTQRDVFLNRAEMMNLLMYLPTWNGR--M 534

Query: 444 PTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMC 503
           P PAI KP  LWTGKQLF+++I    N           +T+S      E ++      + 
Sbjct: 535 PKPAIYKPQRLWTGKQLFTLIIPGRVNCI---------RTHST---HPEDEDGGPYRWIS 582

Query: 504 PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIG 563
           P D  V   + +LI+G L K TLG+G+   ++ V L ++     S   N +  +   W+ 
Sbjct: 583 PGDTKVIVDDGDLIAGILCKKTLGSGSGSLIHIVAL-EHHHEQVSMFFNNIQTVVNNWLL 641

Query: 564 NHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
             G +IGI D    +    + G+ I++  +     I + +   LQ  PG    QT E  +
Sbjct: 642 IEGHTIGIADTLYDQATRRQIGETITKAKDAVFEIIDQAHNYDLQPTPGNTLRQTFENSV 701

Query: 624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
             ILN  R+  G     SL   N+  IM   GSKGS INISQ++ACVGQQ+V G+R P G
Sbjct: 702 NKILNDARDKTGSCAQRSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQNVEGKRIPFG 761

Query: 684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
           F  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA+TGY+ 
Sbjct: 762 FRHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQ 821

Query: 744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           RRLIKA+E + ++YD +VRN    ++Q  YG+DG+D  ++E
Sbjct: 822 RRLIKAMESVMVKYDGTVRNQINQLIQLRYGEDGLDATHVE 862



 Score =  170 bits (431), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 140/512 (27%), Positives = 234/512 (45%), Gaps = 74/512 (14%)

Query: 790  PLNFDRLLMKVKAT--CPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEG 847
            P N +RL+M  +      P  +  + P+QV E+V        +E+C        R     
Sbjct: 940  PCNINRLVMNAQKIFEIDPLSKTNVHPRQVVEMV--------RETCK-------RLVVVP 984

Query: 848  QQDKLDKKIKFVEDI--GWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAG 905
              D+L ++      +  G   +S +  +       ++ + L+  +    +R++  ++  G
Sbjct: 985  GDDRLSREANANATLLMGALIRSSLCAKKVINEYRLSYEALDWVLGEIRARFQQAQIHPG 1044

Query: 906  TAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELE 965
              +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN +K+  TP +T  L 
Sbjct: 1045 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSMTIYLT 1104

Query: 966  CNDNENAARV--VKGRIEKTLLGQVAKSIKI----------------------------- 994
                 +A R   V  R+E T L ++  S  I                             
Sbjct: 1105 GPAARDAERTKDVVARLEHTTLRRLVNSTYIYYDPDPKNSVVEEDREWVSTYYELPDFDV 1164

Query: 995  -VMTSRLASIVIA--------LDMETIQDAHLCINADIVKESIVQTPKIKLKQ-QHIKVL 1044
              ++S +  I  A        L ME I D    I      + I   P   LK    I+++
Sbjct: 1165 NAISSWMLRIEFARKGMTGKKLSMEQISDK---ITRAFGNDLICHIPDDNLKLVMRIRIM 1221

Query: 1045 DFRKLEIFPPVDKSKIHFELYSL-----KNVLPMVIVKGIKTVERVVIAEKEKEKRK--- 1096
            +    +     D +    E  +       N+L  + ++GI  + +V +   + + +K   
Sbjct: 1222 NSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGIPQITKVYMHRPQTQDKKRVV 1281

Query: 1097 VKENGE---KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDE 1153
            +K++G      ++ L  +GT L  V+    +D  +T SN I E+ + LGIEA R  I  E
Sbjct: 1282 IKDDGSFDAVAEWMLETDGTCLMRVLAERDVDPTRTVSNDIVEIFEALGIEAVRKAIECE 1341

Query: 1154 INETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFN 1213
            +   +   G  ++ RH+ LL D+MT +G ++ ITR G+ ++D   L   SFE+T D L +
Sbjct: 1342 MYHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARCSFEETVDILMD 1401

Query: 1214 ASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            A+ +   D + GVSE I++G    +GTG   +
Sbjct: 1402 AATHAECDPMAGVSETIMLGQLAKIGTGCFDL 1433


>gi|170587086|ref|XP_001898310.1| DNA-directed RNA polymerase II largest subunit [Brugia malayi]
 gi|158594705|gb|EDP33289.1| DNA-directed RNA polymerase II largest subunit, putative [Brugia
           malayi]
          Length = 1943

 Score =  511 bits (1316), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 290/714 (40%), Positives = 429/714 (60%), Gaps = 34/714 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L     L +FK ++D+DC +L +  R   P+ +I   I VPP+A+RP+V+  GS  N++
Sbjct: 280 VLTAERALEIFKSISDSDCLILGMDPRYARPDWMIAQVIPVPPLAVRPAVVTFGSARNQD 339

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQVA 199
           D+T +L  +++TN  L++   EAN A   +   +   LQ  VA  I++ + G+P + Q  
Sbjct: 340 DLTHKLSDVVKTNNQLKRN--EANGAAAHVLAEDVKLLQYHVATLIDNSIPGLPAATQKG 397

Query: 200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RPL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I  V +P  +A+ +T+PE
Sbjct: 398 GRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLPIDTVGVPRTIAQNMTFPE 457

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            V+  NI+KL++ +  G  +YPGA+ I   +G ARV          + L+ G  V+RH++
Sbjct: 458 IVTPFNIDKLQELVNRGDSQYPGAKYIIRENG-ARVDLRYHPRAADLHLQPGYRVERHMK 516

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD+++FNRQP+LH+MS+M H+ +I+PW T R N SV  PYNADFDGDEMN+H+PQ+ E 
Sbjct: 517 DGDIIVFNRQPTLHKMSMMGHKVKILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLET 576

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYD--RAAFSLMCCYMGD 436
           + E   +  V   L TP+  + ++   QD LT+  ++T++D F +  R    LM     D
Sbjct: 577 KAEVSEIAMVPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIELPRMMDLLMQMPNWD 636

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
           G     +P PAILKP  LWTGKQ+F+++I  + N+          +T+S     T  D+E
Sbjct: 637 G----KVPQPAILKPKPLWTGKQVFTLIIPGNVNVL---------RTHS-----THPDDE 678

Query: 497 IR--IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                + + P D  V   + EL+SG +   T+G    + L+ V L + G    +   + +
Sbjct: 679 DNGPYKWISPGDTKVIIEHGELLSGIICSRTIGRSAGNLLHVVTL-ELGWEVAAHFYSHI 737

Query: 555 AKLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
             +   W+   G +IGI D +  +    D +  +     +V  V  K +N+ +L+  PG 
Sbjct: 738 QTVVNAWLLAEGHTIGIGDTIADQATYRDIQETIRKAKLDVVEVIEKAHND-ELEPTPGN 796

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              QT E ++  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ
Sbjct: 797 TLRQTFENMVNRILNDARDRTGGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIACVGQQ 856

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
           +V G+R P GF  R+LPHF +    P +KGFV NS+ +GL+ +EFFFH MGGREGL+DTA
Sbjct: 857 NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 916

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           VKTA+TGY+ RRLIKA+E + + YD +VRN+ G +VQ  YG+DG+D   +E +S
Sbjct: 917 VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLGQLVQLRYGEDGLDGMWVENQS 970



 Score =  173 bits (438), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 126/413 (30%), Positives = 203/413 (49%), Gaps = 48/413 (11%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +  +  E  I    SR++   V+ G  +GAI AQS+GEP TQMTL TFH+AGV++ N+T 
Sbjct: 1125 LNSEGFEWLIGEIESRFKQAIVQPGEMVGAIAAQSLGEPATQMTLNTFHYAGVSAKNVTL 1184

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENA--ARVVKGRIEKTLLGQVAKSIKIVM-- 996
            GVPR+KEIIN +K+  TP +T  L+    ++A  A+ V  ++E T L +V  +  I    
Sbjct: 1185 GVPRLKEIINVSKKPKTPSLTVFLQGTAAKDAEKAKDVLCKLEHTTLRKVTANTAIYYDP 1244

Query: 997  ------------------------TSRLASIV--IALDMETIQDAHLCINA--DIVKESI 1028
                                     SR +  +  I LD   + D  L + A  D + +  
Sbjct: 1245 DPKNTIIEEDQEWVNIFYEMPDFDPSRCSPWLLRIELDRRRMTDKKLTMEAIADKIHQGF 1304

Query: 1029 VQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK----------NVLPMVIVKG 1078
                 +     + + L FR        DK     ++  ++          N+L  + ++G
Sbjct: 1305 GDDLNVIYTDDNAEKLVFRLRITNQEGDKGNEDEQVERMEDDVFLRCIETNMLSDLTLQG 1364

Query: 1079 IKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSN 1132
            I+ + +V + +   + +K   +  +G  K   ++ L  +GT L  V+  + +D  +T SN
Sbjct: 1365 IEAITKVYMHKPTTDDKKRVVITPDGGFKAIPEWLLETDGTALAKVLSEQNVDPIRTTSN 1424

Query: 1133 HIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQ 1192
             I E+ + LGIEA R  I  E+N  +   G  ++ RH+ LL D+MT +G ++ ITR GI 
Sbjct: 1425 DICEIFEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGIN 1484

Query: 1193 KMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            + +   LM  SFE+T D L  A+V+   D ++GVSE I++G     GTG   +
Sbjct: 1485 RQEVGALMRCSFEETVDILMEAAVHAEQDPVKGVSENIMLGQLARAGTGCFDL 1537


>gi|299755292|ref|XP_001828577.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
 gi|298411158|gb|EAU93247.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
          Length = 1745

 Score =  511 bits (1316), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 303/717 (42%), Positives = 431/717 (60%), Gaps = 42/717 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNE 140
           ++ P  +L +FK+++D D  +L LS+   RPE +I+T + VPP  +RPS+ +DG +  +E
Sbjct: 212 LITPSEILTVFKKISDHDLHLLGLSDEYARPEWMILTVLPVPPPPVRPSIAVDGGTMRSE 271

Query: 141 NDITERLKRIIQTNASL---QQELVEAN--SAFKSLAGWETLQVEVAQYINSDVRGVPFS 195
           +D+T +L  II+ ++++   ++E V A+  S F+ L   +     VA Y+++D  G+P +
Sbjct: 272 DDLTYKLGDIIKASSNVKRCEEEGVPAHIISEFEQLL--QASIFHVATYMDNDFAGIPQA 329

Query: 196 MQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARIL 254
           +Q + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ EV +P  +A  L
Sbjct: 330 LQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPKSIAMNL 389

Query: 255 TYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
           TYPERV+ +NI  L++ ++NGP  YPGAR +    G    L  ++  +    L+ G IV+
Sbjct: 390 TYPERVTPYNIAYLQELVRNGPTTYPGARYVVRDTGERIDL--RYNKRADAFLQLGWIVE 447

Query: 315 RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
           RHL+DGD VLFNRQPSLH+MS+M HR R+MP+ T R N SV  PYNADFDGDEMNMHVPQ
Sbjct: 448 RHLKDGDYVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQ 507

Query: 375 TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCC 432
           +EE R E   +  V   + +P+  + ++   QD L      T +DTF D       L+  
Sbjct: 508 SEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNHVQNILLWV 567

Query: 433 YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
              DG+    +PTPAILKP  LWTGKQ+ S+ I    N++        E   SN +    
Sbjct: 568 PEWDGV----VPTPAILKPKPLWTGKQILSLTIPRGINIQ-----RASENKSSNPVF--- 615

Query: 493 GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
                       +DG +   N E I G + K  +G  +  GL  V+ R+ G  AT     
Sbjct: 616 ------------DDGML-IENGEFIYGIVDKKIVG-ASAGGLVHVVFREKGPEATKQLFT 661

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
            L  +   W+ ++GFSIGI D        +   K I+E+       I++ N  +L+ KPG
Sbjct: 662 GLQMIVNFWLFHNGFSIGIGDTIADARTMEFITKNIAESKAKVAQVIEDANMDRLKTKPG 721

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
               ++ E+ +  ILN+ R+ +G+     L   N+   M   GSKGS INISQM  CVGQ
Sbjct: 722 MTLRESFESEVEGILNKARDSSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQ 781

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           QSV GRR P GF  R+LPHF +    P A+GFV NS+  GL+  EFFFH M GREGL+DT
Sbjct: 782 QSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDT 841

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGE 789
           AVKTA+TGY+ RRL+KALED+ + YD +VRN+ G ++QF+YG+DGMD A +E ++ E
Sbjct: 842 AVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMDAAFIEKQNIE 898



 Score =  173 bits (439), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 126/414 (30%), Positives = 199/414 (48%), Gaps = 52/414 (12%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T +  E  +    +++       G   G + AQSIGEP TQMTL TFH+AGV+S N+T 
Sbjct: 1053 LTREAFEWILGEIETKFNQSIAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTL 1112

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN A  I TP +T  L  E       A+ V+  +  T L  V  +++I    
Sbjct: 1113 GVPRLKEIINVATNIKTPSLTIHLQPEIAVAPELAKNVQQELAFTSLKTVTSAVEIWYDP 1172

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKI-KLKQQHIKVLDFRKL-------- 1049
               + +I  D   ++      + +I +    Q+P + +L     K+LD RKL        
Sbjct: 1173 NPTTTIIEEDEVFVESFFAIPDEEIERNLHKQSPWLLRLVLDRSKMLD-RKLTMHYVASR 1231

Query: 1050 --EIFPPV--------------------------DKSKIHFE----LYSLKN-VLPMVIV 1076
              E F                             D  ++  E    L  L+N +L  V +
Sbjct: 1232 IAECFKSDLFVIWSEDNSETLVIRCRVLSSGDKDDPEEVGLEEDIFLRQLENTMLNSVTL 1291

Query: 1077 KGIKTVERVVIAEKEKEKRKVKENGEKK-----KYRLLVEGTGLQAVMGAEGIDGCKTKS 1131
            +G++ + RV +   ++    +  +G  K     ++ L  +GT L+ VM  +G+D  +T S
Sbjct: 1292 RGVRGINRVFLTASDR--VTLAPDGSIKTEKGAEWILETDGTNLKGVMCLDGVDSTRTYS 1349

Query: 1132 NHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGI 1191
            N+  E+   LG+EAAR  ++ EI   ++  G  ++ RH+ LL D+MT RG ++ ITR GI
Sbjct: 1350 NNCVEIFTVLGVEAARAALMKEIRNVIEFDGSYVNYRHLGLLCDVMTHRGTLMPITRHGI 1409

Query: 1192 QKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             + D   LM  SFE+T + L  A+  G  D   G++E ++ G   P+GTG   +
Sbjct: 1410 NRADTGALMRCSFEETVEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFDV 1463


>gi|120564951|gb|ABM27003.1| RNA polymerase II largest subunit, partial [Chytriomyces hyalinus]
          Length = 1003

 Score =  511 bits (1316), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 311/747 (41%), Positives = 430/747 (57%), Gaps = 30/747 (4%)

Query: 72  TKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIR 128
           TK SK A    T +LN  +   +F+ ++D D   + L     RPE +II+ + VPP+ +R
Sbjct: 108 TKPSKDA-EATTKVLNGEDCKRIFEMISDEDITNMGLCPKWARPEWMIISVMPVPPMPVR 166

Query: 129 PSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSD 188
           PSV   G+ S E+D+T  L++I+++N  ++    + + A       + LQ  VA  +N+ 
Sbjct: 167 PSVTTPGAPSAEDDLTFALQQIVKSNIQVKSHEQDGSPAHVISEFEQLLQYHVATLMNNQ 226

Query: 189 VRGVPFSMQ--VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAI 246
           + G+P S Q    RPL     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL I +V +
Sbjct: 227 LNGLPQSTQRRSGRPLKSIRDRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDQVGV 286

Query: 247 PIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVE 306
           P  +AR LT+PE V+  NIE+L  C+QNGP ++PGA+ +   +G  R+     +    + 
Sbjct: 287 PRSIARNLTFPETVTPFNIERLMACVQNGPTEHPGAKYVIRDNG-ERIDLRYSKRGGDIH 345

Query: 307 LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 366
           L++G  V+RHL D D+++FNRQPSLH+MS+M HR ++MP+ T R N SV  PYNADFDGD
Sbjct: 346 LQTGYKVERHLVDDDLIIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTTPYNADFDGD 405

Query: 367 EMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DR 424
           EMNMHVPQT E R E   L  V   + +P+     +   QD L      T++D F   D 
Sbjct: 406 EMNMHVPQTHETRAEVQELCMVPRQIVSPQKNAPCMGIVQDSLCGVRKFTKRDNFLPKDF 465

Query: 425 AAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTY 484
               LM     DG+    +PTPAI+KPV LWTGKQ+ S++I P  N+          + +
Sbjct: 466 VMNILMWVPDWDGV----VPTPAIVKPVPLWTGKQMMSLII-PKINL----------ENF 510

Query: 485 SNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA 544
            ++    E + ++ +      D  V  ++ E I+G L K T+GN    G+  V   +YG 
Sbjct: 511 HSQHPDDEPNADVSV-----GDTKVIIQDGEHIAGILCKKTVGNAG-GGIIHVTAMEYGP 564

Query: 545 HATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNE 604
            A     +    +   W+  +GFSIGI D    +         I    +   V I   +E
Sbjct: 565 EAAKRFFHACQVVVNYWMLQNGFSIGIGDTIADEATMGNIVNAIQTARDKVKVIIAAAHE 624

Query: 605 GKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINIS 664
            KL+  PG    +T EA I   LNR R+ AGK+   SL   N+   M   GSKGS +NIS
Sbjct: 625 NKLKPHPGMTIRETFEADIKSELNRARDSAGKSAEKSLSEHNNARQMVIAGSKGSSVNIS 684

Query: 665 QMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMG 724
           QM ACVGQQSV G R P GF +RSLPHF +    P A+GFV NS+  GL+  EFFFH MG
Sbjct: 685 QMAACVGQQSVEGNRIPFGFKNRSLPHFTKDDHSPEARGFVENSYLRGLTPQEFFFHAMG 744

Query: 725 GREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           GREGL+DTAVKTA+TGY+ RRL+KALED+  QYD +VRN+ G IVQF YG+DGMD   +E
Sbjct: 745 GREGLIDTAVKTAETGYIQRRLVKALEDVMAQYDGTVRNSAGQIVQFCYGEDGMDGGKVE 804

Query: 785 GKSGEPLNFDRLLMKVKATCPPAGQRY 811
            +  + +N +    + K     A  RY
Sbjct: 805 PQPFDLMNCNNRDFEKKYRVDIADPRY 831


>gi|432329279|ref|YP_007247423.1| DNA-directed RNA polymerase subunit A' [Aciduliprofundum sp.
           MAR08-339]
 gi|432135988|gb|AGB05257.1| DNA-directed RNA polymerase subunit A' [Aciduliprofundum sp.
           MAR08-339]
          Length = 895

 Score =  511 bits (1315), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 291/737 (39%), Positives = 431/737 (58%), Gaps = 35/737 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  +    +R+ D D  +L +   + RPE +++T + VPP+ +RP++ ++  + +E+D
Sbjct: 179 LTPKEIRERLERIPDEDLPLLGMNPETARPEWMVLTVLPVPPVNVRPTITLETGERSEDD 238

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N  L++              WE LQ  V  Y ++   G+P +  +  RP
Sbjct: 239 LTHKLVDIIRINQRLRENRDSGAPQLIIEDLWELLQYHVTTYFDNQTSGIPPARHRSGRP 298

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L   VQRLKGK+GRFR NLSGKRV ++ RTVISP+P L I EV +P+  AR LT P  V+
Sbjct: 299 LKTLVQRLKGKEGRFRSNLSGKRVNFSSRTVISPEPFLSINEVGVPVAAARELTVPITVT 358

Query: 262 DHNIEKLRQCIQNGP----DKY-PGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
           ++NIEK+R+ I+ GP    +KY PGA  +  PDG    +  +   ++A ++  G IV+RH
Sbjct: 359 EYNIEKMREIIRRGPNPEGEKYVPGANYVIRPDGRRIKITERNAEEVAKKIDLGWIVERH 418

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           L DGD+VLFNRQPSLHRMS+M H  +++P RT RFN +VC PYNADFDGDEMN+HV Q+E
Sbjct: 419 LIDGDIVLFNRQPSLHRMSMMGHLVKVLPQRTFRFNLAVCPPYNADFDGDEMNLHVLQSE 478

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           EAR EA +LM VQ ++ +P+ G  ++    D +T+ FL+T K+  + +     +  Y+  
Sbjct: 479 EARAEAKILMLVQEHILSPRFGGPIIGGLHDHITAMFLLTHKNPKFTKDEAIHILSYL-- 536

Query: 437 GMDRVDLPTPAILKP-VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
             D   LP P   +   E + GK LFS+++    NM  + +         NK +  +   
Sbjct: 537 --DYDSLPEPHRDENGNEFYYGKDLFSLILPKDLNME-FKSKICDPSVCKNKCVYEK--- 590

Query: 496 EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
                  CP D +V  RN +L++G + +  +G+     L  +  R  G+      ++ + 
Sbjct: 591 -------CPIDAYVVIRNGKLVAGTIDENAIGSMKGKLLDRIAKR--GSDTARKFIDDMT 641

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           +L+   I   GF+ GIDD    +E   +  ++I E+ +  +  I+ Y +G LQ  PG   
Sbjct: 642 RLAVGVISYRGFTSGIDDEDIPEEAIIQIHEIIQESMKKTDELIELYRQGLLQPAPGRSV 701

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            +TLE  I  +L   R++AGK     L   NS +IM++ G++ S +N+SQM   +GQQSV
Sbjct: 702 EETLEMEIMRVLAHARDEAGKIASKHLGLENSSVIMARSGARASMLNLSQMAGSIGQQSV 761

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R   G+ DR+LPHF R      A+GFV +S+  GL+ TE+FFH+MGGREGLVDTAV+
Sbjct: 762 RGQRLHRGYQDRTLPHFKRGDLGAKARGFVESSYKKGLNPTEYFFHSMGGREGLVDTAVR 821

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDR 795
           T+ +GYM RRLI ALEDL +  D  V + GG +VQF YG+DG+DP    G  GE ++ D 
Sbjct: 822 TSRSGYMQRRLINALEDLKVTEDRKVIDTGGNVVQFFYGEDGVDPTRSSG--GENIDIDE 879

Query: 796 LLMKVKATCPPAGQRYL 812
           +L  V       G +YL
Sbjct: 880 ILTDV------LGDKYL 890


>gi|397135802|gb|AFO11396.1| RNA polymerase I, partial [Wickerhamomyces canadensis]
          Length = 871

 Score =  511 bits (1315), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 309/796 (38%), Positives = 463/796 (58%), Gaps = 73/796 (9%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  +L +FK +T +DC  L   E   RPE LII+ + VPP  + PS+  + +Q  E+
Sbjct: 14  LLTPSEILNVFKHITPSDCHKLGFHEDYARPEWLIISVLPVPPPPVXPSISFNDTQRGED 73

Query: 142 DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  I++ N ++Q+  ++ +     + F+SL     LQ  VA Y+++D+ G P ++
Sbjct: 74  DLTYKLSDIMKANINVQKLEMDGSPQHVINEFESL-----LQFHVATYMDNDIAGQPQAL 128

Query: 197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q + RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +AR LT
Sbjct: 129 QKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLT 188

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
           YPE V+ +NI+KL + ++NGP+++PGA+ +   +G  R+     +    V L+ G  V+R
Sbjct: 189 YPETVTPYNIQKLTELVRNGPNEHPGAKYVIRDNGD-RIDLRYNKRAGDVVLQYGWKVER 247

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           HL D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+
Sbjct: 248 HLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 307

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCY 433
           EE R E + +  V   + +P++ +  +   QD L     +T +D F  YD+   +L    
Sbjct: 308 EETRAELMNICAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDVFIEYDQMMNTLYWIP 367

Query: 434 MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
             +G+    +P PAILKP  LWTGKQL SV I    +++      + E T          
Sbjct: 368 DWNGV----IPQPAILKPKPLWTGKQLLSVAIPDGIHLQ-----RLDEGT---------- 408

Query: 494 DEEIRIETMC-PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
                  TM  P D  +   + E++ G + K T+G  N  GL   ++R+ G  A +    
Sbjct: 409 -------TMASPKDNGMLIVDGEILFGVVDKKTVGATNG-GLIHTVMREKGPRACADLFG 460

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKG-KLISENYEVCNVKIKEYN----EGKL 607
           +L K+   W+ ++GFSIGI D      ++D    K I+E   +   K+ E      + KL
Sbjct: 461 KLQKVVNFWLLHNGFSIGIGDT-----IADASTMKEITEAIAIAKEKVDEVTLEAQQNKL 515

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
             K G    ++ E  +   LN  R+ AG++   +L   N+   M   GSKGS INI+QM 
Sbjct: 516 TAKHGMTLRESFEDNVIRYLNEARDKAGRSAEVNLKGLNNVKQMVSAGSKGSFINIAQMS 575

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           ACVGQQSV G+R   GF DR+LPHF +    P +KGFV NS+  GL+  EF+FH MGGRE
Sbjct: 576 ACVGQQSVEGKRIAFGFADRTLPHFAKDDYSPESKGFVENSYLRGLTPQEFYFHAMGGRE 635

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GL+DTAVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D  ++E ++
Sbjct: 636 GLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSTGNIIQFVYGEDGLDAGHVEKQT 695

Query: 788 -----GEPLNFDRL----LMKVKATCPP----AGQRYLSPQQVSEIVEKQLAAYGKESCS 834
                GE   F++     L+  K +  P    +G+  +   ++ +I++   A Y +    
Sbjct: 696 IDTLPGEDSTFEKRYKVDLVSEKTSINPSLLESGREIIGNTEIQDILD---AEYAQLVED 752

Query: 835 EAFLNSLRKFFEGQQD 850
             FL  +  F +G+ +
Sbjct: 753 RKFLRKV--FVDGEHN 766


>gi|147921534|ref|YP_684650.1| DNA-directed RNA polymerase subunit A' [Methanocella arvoryzae
           MRE50]
 gi|110620046|emb|CAJ35324.1| DNA-directed RNA polymerase, subunit A1 [Methanocella arvoryzae
           MRE50]
          Length = 877

 Score =  511 bits (1315), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/723 (39%), Positives = 428/723 (59%), Gaps = 30/723 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P +V    + + D D EV  +   + RPE +++T + VPP+ +RPS+ ++  Q +E+D
Sbjct: 170 LMPTDVRDRLEMIPDEDIEVFGMDPRNARPEWMVLTVLPVPPVTVRPSITLESGQRSEDD 229

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N   Q+              WE LQ  V  Y+++ V GVP +  +  RP
Sbjct: 230 LTHKLVDIIRINQRFQENRDAGAPQLIIEDLWELLQYHVTTYMDNAVSGVPPARHRSGRP 289

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDPNL I EV +P+R+A+ +T P  V+
Sbjct: 290 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSINEVGVPLRIAKEMTVPVTVT 349

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
             NIE +R+ ++ G + +PGA  ++  DG    +  K   +LA +++ G  VDR L+DGD
Sbjct: 350 PFNIEVVREYVRRGSENHPGANYVKRADGRRLKITDKNCEELADQIEVGWKVDRQLKDGD 409

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +VLFNRQPSLHRMSIM H  R+MP +T R N +VC PYNADFDGDEMN+HVPQT EA  E
Sbjct: 410 IVLFNRQPSLHRMSIMSHFVRVMPHKTFRLNPAVCAPYNADFDGDEMNLHVPQTMEALAE 469

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY-DRAAFSLMCCYMGDGMDR 440
           A +LM VQ N+ +P+ G  ++    D ++  +L+T+    Y +  A  ++       ++ 
Sbjct: 470 ARILMLVQENILSPRFGGPIIGGLHDHVSGIYLLTKGYRLYTETDALEILS-----KVNV 524

Query: 441 VDLPTP-AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
            +LP P  +   +  ++GKQ+FS ++    +M           TY  K+   E  EE + 
Sbjct: 525 HELPEPYKVENGIRYYSGKQIFSQILPKGLDM-----------TYKAKI--CENCEECKG 571

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
           E +C  D FV   + EL +G + +  +G      +   +++ Y  H  S  ++ + +L+ 
Sbjct: 572 E-LCEKDAFVRISDGELKTGTIDEKAIG-AFSGKILDRIIKTYDEHTASNFLDNVTRLAI 629

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
           R I   GFS GI D     E + +  +++  + +     I+ ++ G+L+  PG    +TL
Sbjct: 630 RAITARGFSYGISDTDIPAESTAQITEILLNSGKQVRKLIEAHDHGELEPLPGRTLEETL 689

Query: 620 EAVITDILNRIREDAGKACMGSLPWR--NSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           E  I   L + R+ AG      L  +  NS +IM++ G++G+ +N++QM  CVGQQSV G
Sbjct: 690 EMRIMQELAKARDGAGGIAGKFLGSQEDNSAVIMARSGARGNFLNLTQMAGCVGQQSVRG 749

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            R   G+ DR+LPHF    +   A+GFV +S+  GL+ TEFFFH MGGREGLVDTAV+T+
Sbjct: 750 ERIMRGYTDRTLPHFKAGDRGADARGFVESSYKKGLNPTEFFFHAMGGREGLVDTAVRTS 809

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
            +GY+ RRL+ AL+DL +++D +VR   G +VQFLYG+DG+DP  M+   GE +N   ++
Sbjct: 810 QSGYLQRRLVNALQDLEVKHDGTVRETRGVVVQFLYGEDGVDP--MKSDYGEGVNIPSIV 867

Query: 798 MKV 800
             V
Sbjct: 868 DSV 870


>gi|384253754|gb|EIE27228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Coccomyxa subellipsoidea C-169]
          Length = 1566

 Score =  511 bits (1315), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 301/710 (42%), Positives = 426/710 (60%), Gaps = 37/710 (5%)

Query: 94  LFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSN-ENDITERLKR 149
           + KR++D DC  L  +    RP+ L++T   VPP  +RPSV+MD S     +D+T +L  
Sbjct: 140 ILKRISDEDCIALGYNPKYARPDWLVMTVFPVPPPPVRPSVMMDSSARQVPDDLTHKLAE 199

Query: 150 IIQTNASLQQELVEANSAFKSLAGW--ETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFV 206
           II+ N +L++   E N A + +     E LQ +VA YI++   G+P S Q   R +    
Sbjct: 200 IIRHNNTLRK--AEENGAPQHIIRQYVEVLQHDVATYIDNTKPGIPVSQQRSGRAIKSIS 257

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
           QRLKGK+GR RGNL GKRV+++ RTVIS DPN+ I E+ +P  +A  LTYPE V+ HN +
Sbjct: 258 QRLKGKEGRVRGNLMGKRVDFSARTVISGDPNISIDELGVPWSIALNLTYPETVTPHNYK 317

Query: 267 KLRQCIQNGPDKYP-----GARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
            L+Q ++NGP  +P     GA+ I   DG  R+     R      L+ G  V+RHL +GD
Sbjct: 318 WLQQLVENGP--HPPAGQTGAKYIIREDG-QRLDLRFLRKDSDRHLEFGYKVERHLVNGD 374

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
            VLFNRQPSLH+MS+M H+ RI+P+ T R N SV +PYNADFDGDEMNMHVPQT E RTE
Sbjct: 375 YVLFNRQPSLHKMSMMGHKVRILPYSTFRLNLSVTSPYNADFDGDEMNMHVPQTPETRTE 434

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
              +M V  N+ +P+  + ++   QD L    L+T++DTF ++  F  +  ++ D   ++
Sbjct: 435 TREIMMVPRNIVSPQANKPVIGIVQDTLLGCRLMTKRDTFIEKDLFMNILMWLEDWDGKI 494

Query: 442 DLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET 501
             P PAILKP  LWTGKQ++++ + P  N+R       ++  +       + +E +    
Sbjct: 495 --PMPAILKPKPLWTGKQVYNLFM-PRVNIR-------RQSAW------YKDNEPL---D 535

Query: 502 MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARW 561
             P+D  V  +N EL++G L K TLG  +   L  V+  + G  A    +++    +  W
Sbjct: 536 FSPSDSQVLIQNGELLTGTLCKKTLG-ASAGSLIHVIWMEEGPEAARAFLSQSQYTTNHW 594

Query: 562 IGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEA 621
           +  HGFSIGI D     +  +   + I+E  E   +  ++     L+ +PG    ++ E 
Sbjct: 595 LLQHGFSIGIGDTVADAKTMNIISETIAEAKEKVKLLTEKLQNRDLEARPGMTMMESFEQ 654

Query: 622 VITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
            +  +LN  R+DAGK    SL   N+ + M   GSKGS INISQM+ACVGQQ+V G+R P
Sbjct: 655 QVNQVLNTARDDAGKLAQSSLDDTNNVVRMVTAGSKGSFINISQMIACVGQQNVEGKRIP 714

Query: 682 NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
            GF  R+LPHF +    P ++GFV NS+  GL+  E FFH MGGREGL+DTAVKT+ TGY
Sbjct: 715 FGFQRRTLPHFTKDDLGPESRGFVENSYLRGLTPQELFFHAMGGREGLIDTAVKTSSTGY 774

Query: 742 MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL 791
           + RRL+KA+EDL I+YD +VR A G +VQFLYG+DGMD   +E +  E L
Sbjct: 775 IQRRLVKAMEDLMIKYDGTVRTANGSVVQFLYGEDGMDGTAIESQKLEHL 824



 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 157/518 (30%), Positives = 228/518 (44%), Gaps = 97/518 (18%)

Query: 790  PLNFDRLLMKVKAT--CPP--AGQRYLSP----QQVSEIVEKQLAAYGKESCSEA----- 836
            P+NF RL+   +    C P   G   L+P     +V E+ +K +   G +  S+      
Sbjct: 896  PVNFKRLIWNAQQMFHCHPHRPGSSGLNPVEVVMRVRELQQKLIVVDGPDELSQEAQRNA 955

Query: 837  ---FLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTC 893
               FL+ LR  F  ++   D K    E   W     IL E+                   
Sbjct: 956  TLLFLSFLRATFASKRVIRDYKFN-REAFDW-----ILGEIE------------------ 991

Query: 894  FSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
             +R+       G  IG + AQSIGEP TQMTL TFHFAGV++ N+T GVPR+ EIIN AK
Sbjct: 992  -TRFHAALAYPGEMIGTVAAQSIGEPTTQMTLNTFHFAGVSAKNVTLGVPRLTEIINIAK 1050

Query: 954  RISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIV---------------- 995
             I TP +T  L  E + +  AA+ V+  +E T L +V  + +I                 
Sbjct: 1051 NIKTPSLTVFLLGEASRDREAAKQVQCSLEYTTLRKVTGATEIYYDPDPTTTVIDEDREF 1110

Query: 996  ----------------MTSRLASIVIALDME-----TIQDAHLCINADIVKESIV----- 1029
                            M+  L  I +  DM      ++ D    IN++   E        
Sbjct: 1111 VENYFEMPDEDMDVNRMSPWLLRIELNRDMMVDKKLSMSDIAERINSEFEDELTCIFNDD 1170

Query: 1030 QTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAE 1089
              PK+ L+   I+VL+    +      ++   F       +L  V ++GI  + +V + E
Sbjct: 1171 NAPKLILR---IRVLNDEGGKEAEAQSETDDVFLRKIEATMLSQVALQGIPDIHKVSLRE 1227

Query: 1090 KEKEKRKVKENGEKKKYR------LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
                KR V  +     Y       L  EG  L  VM    +D  +T SNH+ E+ + LGI
Sbjct: 1228 S---KRIVPSSDAPDGYTNDSEWVLDTEGVNLSEVMCHPDVDYRRTISNHLVEIIEVLGI 1284

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            EAAR  ++ E+   ++  G  ++ RH+  L D MT RG  + ITR GI + +   L   S
Sbjct: 1285 EAARNALLKEMRGVIEFDGSYVNYRHLAALVDSMTSRGHFMAITRHGINRQENGPLAQCS 1344

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            FE+T D LF A+     D + GVSE I++G   PLGTG
Sbjct: 1345 FEETVDILFRAAAFSEKDHMTGVSENIMLGQLAPLGTG 1382


>gi|324120506|dbj|BAJ78644.1| RNA polymerase II largest subunit [Metriocampa sp. 44]
          Length = 1738

 Score =  511 bits (1315), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 281/728 (38%), Positives = 430/728 (59%), Gaps = 24/728 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           V  +F+ ++D +C ++ +     RP+ +I+T + VPP+A+RP+V+M GS  N++D+T +L
Sbjct: 194 VWEIFRHISDEECYIMGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGSARNQDDLTHKL 253

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+ N  LQ+      +    L   + LQ  VA  +++D+ G+P +MQ + RPL    
Sbjct: 254 SDIIKANNELQRNEQSGAATHILLENVKMLQFHVATLVDNDMPGLPKAMQKSGRPLKAIK 313

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ LT+PE V+  NI+
Sbjct: 314 ARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 373

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           K+++ ++ G  +YPGA+ I   +G  R+          + L+ G  V+RH+ DGD+++FN
Sbjct: 374 KMQELVRRGNSQYPGAKYIIRDNG-ERIDLRFHPKSSDLHLQCGYKVERHIRDGDLIIFN 432

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQP+LH+MS+M HR +++PW T R N SV +PYNADFDGDEMNMH+PQ+ E R E   + 
Sbjct: 433 RQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNMHIPQSMETRAEVENIH 492

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLP 444
                + TP+  + ++   QD LT+   +T++D F ++      LM   + DG     +P
Sbjct: 493 ITTRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMLNILMHLPIWDG----KMP 548

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAILKP  LWTGKQ+FS++I  + NM          +T+S      + +++   + + P
Sbjct: 549 QPAILKPKPLWTGKQVFSLIIPGNVNMI---------RTHS---AHPDEEDDGPYKWISP 596

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  V   + +L+ G L K TLG  +   L  +   + G          +  +   W+  
Sbjct: 597 GDTKVMVEHGDLVMGILCKKTLGT-SAGSLLHICFVELGHEVCGQFYGNIQTVINNWLLL 655

Query: 565 HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
            G SIGI D     +   +  K I +  E     I++ +  +L+  PG    QT E  + 
Sbjct: 656 EGHSIGIGDSIADPQTYLEIQKTIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVN 715

Query: 625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
            ILN  R+  G +   SL   N+   M   G+KGS INISQ++ACVGQQ+V G+R P GF
Sbjct: 716 RILNDARDKTGGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQNVEGKRIPFGF 775

Query: 685 IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
             R+LPHF +    P ++GFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA+TGY+ R
Sbjct: 776 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 835

Query: 745 RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATC 804
           RLIKA+E + + YD ++RN+ G ++Q  YG+DG+   ++E +S   +       + K   
Sbjct: 836 RLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGEHVEFQSLPTVKLSNRAFEKKFKF 895

Query: 805 PPAGQRYL 812
            P+ +RYL
Sbjct: 896 DPSNERYL 903



 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/414 (32%), Positives = 206/414 (49%), Gaps = 49/414 (11%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R++  +V+ G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1033 LSSEAFEWLIGEIETRFQQAQVQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1092

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENA--ARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN +K+   P +T  L  N   +A  A+ V  R+E T L +V  +  I    
Sbjct: 1093 GVPRLKEIINISKKPKAPSLTVFLTGNAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 1152

Query: 999  RLASIVIALDMETIQ----------------------DAHLCINADIVKESIVQ------ 1030
               + VIA D E +                       D     +  +  E I +      
Sbjct: 1153 DPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGF 1212

Query: 1031 ------------TPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NVLPMVIVK 1077
                          K+ L+ + +   D +  E    VDK +    L  ++ N+L  + ++
Sbjct: 1213 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQ 1272

Query: 1078 GIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKS 1131
            GI+ + +V +   + + +K   V E G+ K   ++ L  +GT L  V+    +D  +T S
Sbjct: 1273 GIEAIAKVYMHLPQTDSKKRIVVTETGDFKAIAEWLLETDGTSLMKVLSERDVDPVRTYS 1332

Query: 1132 NHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGI 1191
            N I E+   LGIEA R  +  E+N  +  +G+ ++ RH+ LL D+MT +G ++ ITR GI
Sbjct: 1333 NDICEIFSVLGIEAVRKSVEKEMNMVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1392

Query: 1192 QKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    LGTG   +
Sbjct: 1393 NRQDTGALMRCSFEETVDVLMDAAAHAEVDPMRGVSENIIMGQLPRLGTGCFDL 1446


>gi|397135932|gb|AFO11461.1| RNA polymerase I, partial [Candida blankii]
          Length = 872

 Score =  511 bits (1315), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 293/711 (41%), Positives = 426/711 (59%), Gaps = 43/711 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P +VL +FK ++D D   L L+    RP+ ++IT + VPP  +RPS+ ++ +   E+
Sbjct: 14  MLTPSDVLNVFKHISDEDITRLGLNGDYARPDWMVITVLPVPPPPVRPSIAINETARGED 73

Query: 142 DITERLKRIIQTNASLQ---QELVEAN--SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  I++ N ++Q   QE   A+  + F+SL     LQ  VA Y+++D+ G P ++
Sbjct: 74  DLTYKLADILKANGNVQRCDQEGAPAHVINEFESL-----LQYHVATYMDNDIAGQPQAL 128

Query: 197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ +V +P  +AR LT
Sbjct: 129 QKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPKSIARTLT 188

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
           YPE V+ +NI++L + ++NGP+++PGA+ +   D   R+     +    + L+ G  V+R
Sbjct: 189 YPEIVTPYNIQRLSELVRNGPNEHPGAKYV-IRDTGERIDLRYHKRAGDIALQYGWKVER 247

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           H+ D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+
Sbjct: 248 HIMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 307

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCY 433
           EE R E   +  V   + +P++ + ++   QD L     +TR+DTF  YD+    L    
Sbjct: 308 EETRAELSQIAAVPLQIVSPQSNKPVMGIVQDTLCGIRKLTRRDTFLEYDQVMNILFWVP 367

Query: 434 MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
             +G+    +P PAILKP  LWTGKQ+              V+LT+    +  +    EG
Sbjct: 368 QWNGI----VPQPAILKPKPLWTGKQM--------------VSLTIPSGIFLQRF--DEG 407

Query: 494 DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
                   + P D  +     E++ G + KAT+G+    GL   ++R+ G          
Sbjct: 408 -----TTWLSPKDNGMLIAKGEIVYGAVDKATVGS-TGGGLIHTIMREKGPQVCCNFFGA 461

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
           + K+   W+ ++GFSIGI D              ISE  +     I+E ++ KL+   G 
Sbjct: 462 VQKVVNFWLLHNGFSIGIGDTIADSATMRDITNAISEAKQAVAGFIEEAHQNKLKQAAGM 521

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              +T E  +   LN  R+ AGK+   SL  +N+   M   GSKGS INISQM ACVGQQ
Sbjct: 522 TLRETFEQKVMVALNEARDQAGKSSQVSLTEKNNVKQMVVSGSKGSFINISQMSACVGQQ 581

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
            V G+R P GF DRSLPHF +    P ++GF+ NS+  GL+  EFFFH M GREGL+DTA
Sbjct: 582 VVEGKRIPFGFADRSLPHFTKDDFGPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTA 641

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           VKTA+TGY+ RRL+KALED+ +QYD + RN+ G I+QFLYG+DG+D A +E
Sbjct: 642 VKTAETGYIQRRLVKALEDIMVQYDGTTRNSLGDIIQFLYGEDGLDGAQVE 692


>gi|301628367|ref|XP_002943327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like,
           partial [Xenopus (Silurana) tropicalis]
          Length = 1946

 Score =  511 bits (1315), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 302/775 (38%), Positives = 444/775 (57%), Gaps = 45/775 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR+TD +C +L +  R   PE LI+T + VPP+++RP+V+M GS  N++
Sbjct: 191 LLSPERVHEIFKRITDEECFILGMDPRFARPEWLIVTVLPVPPLSVRPAVVMQGSARNQD 250

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 251 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 310

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+PE V
Sbjct: 311 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFPEIV 370

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ D
Sbjct: 371 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQIGYKVERHMCD 428

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 429 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 488

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 489 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 548

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS+++  H N +R +      E +   K I         
Sbjct: 549 KV--PQPAILKPRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPYKHI--------- 597

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 598 ----SPGDTKVIVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDTTRLFYSNIQTVI 652

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 653 NNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 711

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 712 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 771

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 772 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 831

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 832 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGEGVEFQNL- 882

Query: 798 MKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFL------NSLRKFFE 846
               AT  P+ + +    +     E+ L    +E   +  L      N L K FE
Sbjct: 883 ----ATLKPSNKAFEKKFKFDYANERALRRTLQEDVVKEILSDAHVQNELEKEFE 933



 Score =  170 bits (431), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 124/406 (30%), Positives = 196/406 (48%), Gaps = 61/406 (15%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1050 SKFNQAVAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1109

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIA------ 1006
              TP +T  L      +A R   +  R+E T L +V  +  I       + V++      
Sbjct: 1110 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVSEDQEWV 1169

Query: 1007 ----------------------LDMETIQDAHL------------------CINADIVKE 1026
                                  LD + + D  L                  CI  D   E
Sbjct: 1170 NVYYEMPDFDVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1229

Query: 1027 SIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERV 1085
             +V   +I +  +  K+ D  ++     VDK      L  ++ N+L  + ++GI+ + +V
Sbjct: 1230 KLVLRIRI-MNSEENKMQDEEEV-----VDKMDDDVFLRCIESNMLTDMTLQGIEQISKV 1283

Query: 1086 VIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQ 1139
             +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I E+  
Sbjct: 1284 YMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFT 1343

Query: 1140 TLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVL 1199
             LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D   L
Sbjct: 1344 VLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPL 1403

Query: 1200 MLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            M  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1404 MKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1449


>gi|355570729|ref|ZP_09041999.1| DNA-directed RNA polymerase subunit A' [Methanolinea tarda NOBI-1]
 gi|354826011|gb|EHF10227.1| DNA-directed RNA polymerase subunit A' [Methanolinea tarda NOBI-1]
          Length = 879

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 275/717 (38%), Positives = 418/717 (58%), Gaps = 31/717 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++    +++ D D   L ++    RPE  ++T + VPP+ +RPS+I++  Q +E+D
Sbjct: 171 LTPADIRARLEKIPDEDLRHLGINPDVARPEWTVLTVLPVPPVTMRPSIILENGQRSEDD 230

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N   ++              WE LQ  V  Y++++V G P +  +  RP
Sbjct: 231 LTHKLVDIIRINQRFKENQDAGAPQLIIEDLWELLQYHVTTYLDNEVAGCPPARHRSGRP 290

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK GRFRG+LSGKRV ++ RTVISPDPNL + EV IP+ +A  +T P  V+
Sbjct: 291 LKTLSQRLKGKDGRFRGSLSGKRVNFSARTVISPDPNLSVMEVGIPLAVANEMTLPVTVT 350

Query: 262 DHNIEKLRQCIQNGPDKYP-----GARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
            +NIE+LRQ ++NGP +       GA  +  PD     L       +A  L+ G +V+R 
Sbjct: 351 PYNIEELRQMVRNGPVRRSLSQPCGANYVIRPDKRRMRLAEGNLETVAEMLEPGWVVERQ 410

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           + DGD+VLFNRQPSLHRMSIM HR ++M  RT R N +VC PYNADFDGDEMN+H+PQTE
Sbjct: 411 IRDGDIVLFNRQPSLHRMSIMAHRVKVMDGRTFRLNPAVCPPYNADFDGDEMNLHIPQTE 470

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           EAR EA +L+ V+ N+ +P+ G  ++    D ++  F++T +  ++ +        Y+  
Sbjct: 471 EARAEAAILVAVEENILSPRFGGPIIGGIHDHVSGIFMLTNQLKWHTKQE----ALYLLK 526

Query: 437 GMDRVDLPTPAILKP-VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
            ++   LP P ++K  V  W+ KQ+FS+++    NM    +     +T   +        
Sbjct: 527 NIEIEHLPPPGMVKDGVPYWSNKQIFSIVLPKELNMVFRASSCQNCETCKRQ-------- 578

Query: 496 EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
                  C  D +V   +  L SG + K  +G  +   + + ++R YG    +  ++ + 
Sbjct: 579 ------ECDRDAYVRIIDGNLESGTIDKKAIGAFDGQ-IVNRIIRQYGMKRAADFIDDIT 631

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
            L+ R I  +GFS GIDD    K    +  +++         +I+ Y +G+L+  PG   
Sbjct: 632 HLAIRAIMMNGFSFGIDDEDLSKTEYGQIEEVLRNAITDVQRRIRIYEDGQLEAMPGRTP 691

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            +TLE  I  +L + R+  G+     L   NS ++M+  G++GS +N++QM  CVGQQSV
Sbjct: 692 EETLEMQIMQVLGKARDRTGEIAGRHLGLGNSAVVMAVSGARGSMLNLTQMAGCVGQQSV 751

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G R   G+ DR+LPHF +  +  AA GF+++S+ SGL+ TEFFFH +GGREGLVDTAV+
Sbjct: 752 RGERIMRGYDDRTLPHFRKGDRGAAAHGFISHSYKSGLNPTEFFFHAIGGREGLVDTAVR 811

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLN 792
           T+ +GY+ RR+I AL+DL + YD +VR  GG I+QF YG+DG DP  M+   G+P++
Sbjct: 812 TSQSGYLQRRMINALQDLKVAYDGTVRTTGGRIIQFCYGEDGTDP--MKSSFGDPVD 866


>gi|324120510|dbj|BAJ78646.1| RNA polymerase II largest subunit [Pedetontus unimaculatus]
          Length = 1549

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 287/753 (38%), Positives = 441/753 (58%), Gaps = 27/753 (3%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L    V  +FK ++D +C +L +     RP+ +I+T + VPP+A+RP+V+M GS  N++
Sbjct: 189 VLTAERVWEIFKHISDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMYGSARNQD 248

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  II+ N  L +      +A       + LQ  VA  +++D+ G+P +MQ + R
Sbjct: 249 DLTHKLADIIKANNELLRNEQAGAAAHVIAENIKMLQFHVATLVDNDMPGLPRAMQKSGR 308

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL     RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ LT+PE V
Sbjct: 309 PLKALKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIV 368

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI+K++  ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ +
Sbjct: 369 TPFNIDKMQDLVRRGNSQYPGAKYIIRDNGERIDL--RFHPKPSDLHLQCGYKVERHIRE 426

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+++FNRQP+LH+MS+M HR +++PW T R N SV +PYNADFDGDEMN+HVPQ+ E R
Sbjct: 427 GDLIIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETR 486

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDG 437
            E   +      + TP+  + ++   QD LT+   +T++D F ++      LM   + DG
Sbjct: 487 AEVENIHITARQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMHLPIWDG 546

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
                +P PAILKP  +WTGKQ+FS++I  + NM          +T+S      + +++ 
Sbjct: 547 ----KMPQPAILKPKPMWTGKQVFSLIIPGNVNMI---------RTHST---HPDDEDDG 590

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
             + + P D  V   + EL+ G L K TLG  +   L  + + + G          +  +
Sbjct: 591 PYKWISPGDTKVMVEHGELVMGILCKKTLG-ASAGSLLHICMLELGHEVAGRFYGNIQTV 649

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
              W+   G SIGI D     +   +  K I +  E     I++ +  +L+  PG    Q
Sbjct: 650 INNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQ 709

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G
Sbjct: 710 TFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEG 769

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA
Sbjct: 770 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 829

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIKA+E + + YD ++RN+ G ++Q  YG+DG+    +E ++   +      
Sbjct: 830 ETGYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGETVEFQTQPTIKLSNKA 889

Query: 798 MKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGK 830
            + K    P  +RYL  +  +E + K+L   G+
Sbjct: 890 FEKKFKFDPTNERYLR-RIFNEDIMKELMGSGE 921



 Score =  113 bits (282), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 105/183 (57%), Gaps = 6/183 (3%)

Query: 1069 NVLPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAE 1122
            N+L  + ++GI+ + +V +   + + +K   + + GE K   ++ L  +GT L  V+   
Sbjct: 1265 NMLSDMTLQGIEAIGKVYMHLPQTDAKKRIMITDTGEFKAIAEWLLETDGTSLMKVLSER 1324

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
             +D  +T SN I E+   LGIEA R  +  E+N  ++ +G+ ++ RH+ LL D+MT +G 
Sbjct: 1325 DVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGH 1384

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            ++ ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    +GTG 
Sbjct: 1385 LMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEQDPMRGVSENIIMGQLPRMGTGC 1444

Query: 1243 LKI 1245
              +
Sbjct: 1445 FDL 1447



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 4/135 (2%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R++  +V+ G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1034 LSSEAFEWLIGEIETRFQQAQVQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1093

Query: 941  GVPRIKEIINGAKRISTPIITAEL---ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            GVPR+KEIIN +K+   P +T  L      D E A  V+  R+E T L +V  +  I   
Sbjct: 1094 GVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL-CRLEHTTLRKVTANTAIYYD 1152

Query: 998  SRLASIVIALDMETI 1012
                + VI  D E +
Sbjct: 1153 PDPQNTVITEDQEFV 1167


>gi|345309516|ref|XP_003428845.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1, partial
           [Ornithorhynchus anatinus]
          Length = 988

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 291/734 (39%), Positives = 430/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +     RPE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 182 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 241

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 242 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 301

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 302 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 361

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ D
Sbjct: 362 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQIGYKVERHMCD 419

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 420 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 479

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 480 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 539

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS+++  H N +R +      E +   K I         
Sbjct: 540 KV--PQPAILKPRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPYKHI--------- 588

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 589 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDTTRLFYSNIQTVI 643

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 644 NNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 702

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 703 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 762

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 763 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 822

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 823 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 873

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 874 ----ATLKPSNKAF 883


>gi|297271809|ref|XP_001118060.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Macaca
           mulatta]
          Length = 1097

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 296/762 (38%), Positives = 439/762 (57%), Gaps = 42/762 (5%)

Query: 57  KVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPE 113
           ++  S  E  +   H  E      +   +L+P  V  +FKR++D +C VL +     RPE
Sbjct: 190 RIRRSGLELYAEWKHVNEDSQEKKI---LLSPERVHEIFKRISDEECFVLGMEPRYARPE 246

Query: 114 KLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAG 173
            +I+T + VPP+++RP+V+M GS  N++D+T +L  I++ N  L++      +A      
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAED 306

Query: 174 WETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTV 232
            + LQ  VA  +++++ G+P +MQ + RPL    QRLKGK+GR RGNL GKRV+++ RTV
Sbjct: 307 VKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTV 366

Query: 233 ISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA 292
           I+PDPNL I +V +P  +A  +T+ E V+  NI++L++ ++ G  +YPGA+ I   +G  
Sbjct: 367 ITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDR 426

Query: 293 RVLYGKFRNQLA-VELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRF 351
             L  +F  + + + L++G  V+RH+ DGD+V+FNRQP+LH+MS+M HR RI+PW T R 
Sbjct: 427 IDL--RFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRL 484

Query: 352 NESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTS 411
           N SV  PYNADFDGDEMN+H+PQ+ E R E   L  V   + TP++   ++   QD LT+
Sbjct: 485 NLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTA 544

Query: 412 SFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHAN- 470
               T++D F +R     +  ++     +V  P PAILKP  LWTGKQ+FS++I  H N 
Sbjct: 545 VRKFTKRDVFLERGEVMNLLMFLSTWDGKV--PQPAILKPRPLWTGKQIFSLIIPGHINC 602

Query: 471 MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGN 530
           +R +      E +   K I              P D  V   N ELI G L K +LG  +
Sbjct: 603 IRTHSTHPDDEDSGPYKHI-------------SPGDTKVVVENGELIMGILCKKSLGT-S 648

Query: 531 KDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLIS 589
              L  +   + G   T    + +  +   W+   G +IGI D +   K   D +  +  
Sbjct: 649 AGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKK 708

Query: 590 ENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPL 649
              +V  V  K +N  +L+  PG    QT E  +  ILN  R+  G +   SL   N+  
Sbjct: 709 AKQDVIEVIEKAHNN-ELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFK 767

Query: 650 IMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSF 709
            M   G+KGS INISQ++A VGQQ+V G+R P GF  R+LPHF +    P ++GFV NS+
Sbjct: 768 SMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSY 827

Query: 710 YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIV 769
            +GL+ TEFFFH MGGREGL+DTAVKTA+TGY+ RRLIK++E + ++YD +VRN+   +V
Sbjct: 828 LAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVV 887

Query: 770 QFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRY 811
           Q  YG+DG+        +GE + F  L     AT  P+ + +
Sbjct: 888 QLRYGEDGL--------AGESVEFQNL-----ATLKPSNKAF 916


>gi|399949936|gb|AFP65592.1| DNA-directed RNA polymerase II largest chain [Chroomonas
           mesostigmatica CCMP1168]
          Length = 1473

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 284/720 (39%), Positives = 426/720 (59%), Gaps = 29/720 (4%)

Query: 73  KESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRP 129
           K +++  +  T IL    +  +F++++D D + + L+    +P+ +I+T + +PP  IRP
Sbjct: 175 KFNQSITSEPTRILGAERIHEIFEKISDLDSKKIGLNPSVSKPDWMILTVLPIPPPTIRP 234

Query: 130 SVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDV 189
           SV+ D +   E+D+T +L  I++TN SL Q  +              LQ  +  Y+N+ V
Sbjct: 235 SVMFDMTSRAEDDLTYKLGDIVRTNKSLFQLTIACAPVQIINEHLNLLQYHIGSYMNNKV 294

Query: 190 RGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPI 248
             +P S+Q + RP+    +RL+GK+GR RGNL GKRV+++ RTVI+PDPN+ +  + +P 
Sbjct: 295 PNIPKSIQKSGRPIKSLAERLQGKEGRVRGNLMGKRVDFSARTVITPDPNIPLDGIGVPW 354

Query: 249 RMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVEL 307
            +A  LTYPE V+  N EKL++ + NGP  +PGAR +   DG+   L Y K  +++ +E+
Sbjct: 355 SIALNLTYPEIVTSFNFEKLKKLVLNGPIHHPGARYVIKNDGSRLDLRYVKKLDEIPLEI 414

Query: 308 KSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDE 367
             GC V+RHL+DGDVVLFNRQPSLH+MS+M H  +IM + T R N S  +PYNADFDGDE
Sbjct: 415 --GCKVERHLQDGDVVLFNRQPSLHKMSMMGHVVKIMHYSTFRMNLSATSPYNADFDGDE 472

Query: 368 MNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 427
           MN+H+PQT EA+ E L L+ + N + + +  + ++   QD L   FL++ +D+F +R+ F
Sbjct: 473 MNLHLPQTIEAKAELLNLLMLPNCIISQQGNKPVMGIVQDSLVGGFLLSHRDSFLNRSQF 532

Query: 428 SLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNK 487
            L+   + +    +  P P ILKP  LWTGKQ+FSV + P  N                 
Sbjct: 533 MLLLMQLQEWNGSI--PFPTILKPRILWTGKQIFSVFL-PKINF---------------- 573

Query: 488 LIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
           L ++ G  E     + P D  V      LISG + K ++G  +   L  +  +++G    
Sbjct: 574 LRKSLGHSEHEKSNISPRDTRVLILGGHLISGIIDKRSVG-ASGGSLIHICWKEFGPKKA 632

Query: 548 SGCMNRLAKLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGK 606
           S  +++   +   W+ + GFS+GI D +   K + D    +     E   +  K  N+ K
Sbjct: 633 SLFVSQFQLIVNTWLQSKGFSVGIGDTISDNKIMKDITKTIKKAKKEARQITQKNTNKKK 692

Query: 607 LQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQM 666
            ++  G       E  I  ILN  R+ AG      L   N+   M  CGSKGS INISQ+
Sbjct: 693 -EISIGKILNDNFENHINVILNSARDKAGSIAQRCLLDSNNIKRMVMCGSKGSFINISQI 751

Query: 667 VACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGR 726
           +ACVGQQ++ G+R P  F +R LPHF ++   P  +GFV NS+ SGLS  EFFFH MGGR
Sbjct: 752 IACVGQQNIEGKRIPLCFDNRCLPHFSKQNNGPETRGFVQNSYISGLSPEEFFFHAMGGR 811

Query: 727 EGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           EGL+DTA+KT++TGY+ RRL KA+E++S++YD +VRN+ G I++F YG+DGMD  N+E +
Sbjct: 812 EGLIDTAIKTSETGYIQRRLSKAMENISVEYDLTVRNSEGGIIEFFYGEDGMDALNLENQ 871



 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 83/139 (59%)

Query: 1103 KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHG 1162
            +K+Y L  EG  L+ ++   G+D  ++ SN I E+ + LG+EA+R  +I E+   +   G
Sbjct: 1316 QKEYVLDTEGVDLRYILNFPGMDHIRSSSNDIVEIFRILGVEASRRILIQELRNLISFDG 1375

Query: 1163 MSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDR 1222
              ++ RH+ LL D+MT RG++L ITR GI K +   +   SFE+T D L+ A+  G  D 
Sbjct: 1376 SYVNSRHLYLLVDIMTHRGKLLSITRHGINKTEIGPIAKCSFEETIDILYQAAAFGISDN 1435

Query: 1223 IEGVSECIIMGIPMPLGTG 1241
            ++ +S  +++G    LGTG
Sbjct: 1436 LKSISASVLLGQLPLLGTG 1454



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 10/182 (5%)

Query: 790  PLNFDRLLMKVKATCPPAGQRY-LSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQ 848
            P+N  R+++      P   +   LSP ++ + V K++  Y  +S     ++SL K F   
Sbjct: 950  PVNISRIIINANNIFPKISKYSDLSPTEIIDGV-KKIENYCFDSLGPK-IDSLCKSFCNC 1007

Query: 849  ---QDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAG 905
               + +L+  + F   +    +S +  ++   T  ++ K     +     +YR   +  G
Sbjct: 1008 CRCESRLNATLLFCIYL----RSMLASKLVLFTYKLSRKSFVWVLNEICIQYRKSIINPG 1063

Query: 906  TAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELE 965
              +G I AQSIG+P TQMTL TFH+AGV++ N+T GVPR+KEIIN ++   TP +T   +
Sbjct: 1064 EMVGTISAQSIGQPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSRTAKTPSLTIYFK 1123

Query: 966  CN 967
             N
Sbjct: 1124 KN 1125


>gi|346971808|gb|EGY15260.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium dahliae
           VdLs.17]
          Length = 1755

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 291/709 (41%), Positives = 422/709 (59%), Gaps = 36/709 (5%)

Query: 94  LFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGS---QSNENDITERL 147
           + +R++D D   + L+    RPE +IIT + VPP  +RPS+ MDG+     NE+D+T +L
Sbjct: 220 ILRRISDDDLRDMGLNLDYARPEWMIITVLPVPPPPVRPSISMDGTGQGMRNEDDLTYKL 279

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFV 206
             II+ N +++Q + EA+ A  +    + LQ  VA Y+++D+ G P ++Q   RP+    
Sbjct: 280 GDIIRANGNVRQAIREASPAHIARDFEQLLQYHVATYMDNDIAGQPRALQKSGRPVKAIR 339

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+ D NL + EV +P  +AR LTYPE V+ +NI 
Sbjct: 340 ARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNIG 399

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL + +QNGP+++PGA+ +   DGT R+     R    + L+ G  V+RHL  GD ++FN
Sbjct: 400 KLHELVQNGPNEHPGAKYVIRTDGT-RIDLRHHRRAGQISLEYGWKVERHLMTGDYIIFN 458

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R E   L 
Sbjct: 459 RQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEIKELC 518

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDGMDRVDLP 444
            V  N+ +P+    L+   QD L  ++ + R+D F  +     +  ++   DG+    +P
Sbjct: 519 MVPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLTKEEVMNIMLWVPNWDGI----IP 574

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAIL+P   WTGKQ+ S              + + E    N L  T+ D  ++ E +  
Sbjct: 575 VPAILRPSPRWTGKQIMS--------------MAIPEIVSLNSLPDTKEDNSVKDEGLLI 620

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
             G       +L+ G L K  +G  +  G+  ++  ++G  A    +N + +    W+ +
Sbjct: 621 QSG-------QLMYGLLTKKVIGAASG-GIVHIVYNEHGPEAAMKFLNGVQQTVNYWLLH 672

Query: 565 HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
           +GFSIGI D  P     +K    I E  +      K+    +L+  PG +  +T E+ ++
Sbjct: 673 NGFSIGIGDTIPDTLTIEKVQGHIDEQKDEVARLTKQATNNELEPSPGMNIRETFESKVS 732

Query: 625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
             LN  R+ AG     SL   N+ + M+  GSKGS INISQM A VGQQ V G+R P GF
Sbjct: 733 RALNTARDKAGTTTQKSLKDLNNAVTMALSGSKGSSINISQMTALVGQQIVEGKRIPFGF 792

Query: 685 IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
             R+LPHF +    P A+GFV NS+  GL+ +EFFFH M GREGL+DTAVKTA+TGY+ R
Sbjct: 793 KYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQR 852

Query: 745 RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
           RL+KALED+S +YD +VRN+ G I+QFLYG+DG+D   +E +  + LN 
Sbjct: 853 RLVKALEDVSAKYDGTVRNSLGDIIQFLYGEDGLDAIYIEKQRMDFLNM 901



 Score =  190 bits (483), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 123/398 (30%), Positives = 201/398 (50%), Gaps = 49/398 (12%)

Query: 896  RYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRI 955
            R+    +  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A+ I
Sbjct: 1067 RWAKASISPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAQNI 1126

Query: 956  STPIITAEL-ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ- 1013
             TP +   L E N  + AA+ ++  +E T L  V    +I     L + VI  D + ++ 
Sbjct: 1127 KTPSMVVYLSEGNATQEAAKALRSTVEHTTLRSVTAMTEIYYDPDLENTVIPSDTDMVES 1186

Query: 1014 ------DAHLCINAD--------------IVKESIVQTPKIKLKQQHIKVLDF------- 1046
                  D+H   N                + KE  V+    ++K  +    +        
Sbjct: 1187 YWAIPDDSHESANLQNRWLLRITLDRQKMLDKELTVEDVASRIKADYPNDCNLVFSDNNA 1246

Query: 1047 -----RKLEIFPPV---DKSKIHFELYSLK----NVLPMVIVKGIKTVERVVIAEKEK-- 1092
                 R   I P     D+SK+  ++  LK    ++L  + ++G+  +ER  + ++ K  
Sbjct: 1247 DEQVIRIRTIKPDKGGDDESKVEDDVM-LKQFETHLLDTLTLRGVLGIERAFLNKETKLI 1305

Query: 1093 -----EKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAAR 1147
                      K +   +++ L   GT L +V+  EG+D  +T +NH++++ +  GIEAAR
Sbjct: 1306 ETDDGALLAAKADDRCQEWYLDTSGTSLSSVLMVEGVDATRTYTNHLWQINEVFGIEAAR 1365

Query: 1148 ICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKT 1207
              ++ E+ + +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  SFE+T
Sbjct: 1366 GALVRELTQVLAFDGSYVNHRHLALLVDVMTYRGGISAVTRHGINRADTGALMRCSFEET 1425

Query: 1208 ADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             + L  A+  G  D   G+SE +++G   P+GTG  ++
Sbjct: 1426 VEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFEV 1463


>gi|150401218|ref|YP_001324984.1| DNA-directed RNA polymerase subunit A' [Methanococcus aeolicus
           Nankai-3]
 gi|150013921|gb|ABR56372.1| DNA-directed RNA polymerase subunit A' [Methanococcus aeolicus
           Nankai-3]
          Length = 888

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 282/723 (39%), Positives = 439/723 (60%), Gaps = 37/723 (5%)

Query: 94  LFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
           + +++ D DC ++ ++    RPE +I+T++ VPP+ +RPS+ ++  + +E+D+T +L  I
Sbjct: 186 ILEKIPDEDCMLIGVNPEVARPEWMILTSLPVPPVTVRPSITLESGERSEDDLTHKLVDI 245

Query: 151 IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARPLSGFVQRL 209
           I+ N  L + +            W+ LQ  +  Y +++  G P +  +  RPL    QRL
Sbjct: 246 IRINQRLDENIEGGAPNLIIEDLWDLLQYHINTYFDNEAPGTPPARHRSGRPLRTIAQRL 305

Query: 210 KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
           KGK+GRFR NL+GKRV ++ RTVISPDP L I EV IP ++A+ LT PE+V+ +NI+K+R
Sbjct: 306 KGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEVGIPKQIAKELTIPEKVTKYNIDKIR 365

Query: 270 QCIQNGPDKYPGA----RMIRYPDGTAR----VLYGKFRNQLAVELKSGCIVDRHLEDGD 321
           + I NG D +PG     + ++  DG        +  K +   + +++ G IV+RHL DGD
Sbjct: 366 ELIANGADNHPGVNYLIKKVKTRDGKEEEYKIKITDKVKELWSEKVEEGMIVERHLIDGD 425

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +VL+NRQPSLHRMSIM HR +++P+RT R N  VC PYNADFDGDEMN+HVPQ+EEAR E
Sbjct: 426 IVLYNRQPSLHRMSIMAHRVKVLPYRTFRHNLCVCPPYNADFDGDEMNIHVPQSEEARAE 485

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
           A  +M V+N++ +P+ G  ++ +  DF++ ++++T      D A+  L    +      +
Sbjct: 486 AEAIMLVENHIVSPRYGGPIIGAIHDFISGAYVLTSSYFTKDEASILLRSANL-----EM 540

Query: 442 DLPTP-AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           DL  P  I   VEL++G+ LFS  +           LT+K +  + K        EI  +
Sbjct: 541 DLGAPDKIEDGVELYSGRTLFSKTLPK--------ELTLKYRAKTCKKC------EICEK 586

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGL-YSVLLRDYGAHATSGCMNRLAKLSA 559
             CP+D +V   N EL+ G + K   G G++ G+  + L++++G+      ++   K+S 
Sbjct: 587 EDCPHDSYVVIINGELLKGVIDKN--GYGSEAGIILNTLVKEFGSEQARIFLDTSTKMSI 644

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
           + +   GF+ GIDD    +E  ++    + +  +     IKEY  G L+L PG    ++ 
Sbjct: 645 KSMMIKGFTTGIDDEDISEESVEEIKATLDKAEKEVEEIIKEYENGTLELLPGRSPEESR 704

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           EA I  +L + R+DAGK    +L   N   +M++ G++GS +NI+ M  CVGQQ+V G R
Sbjct: 705 EAYIMQVLGKARDDAGKVAERNLSKTNHAAVMARTGARGSLLNITMMAGCVGQQAVRGGR 764

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
              G+ DR+LPHF + +    + GFV + + +G++ TE+FFH MGGREGLVD AV+TA +
Sbjct: 765 IFRGYRDRTLPHFEKGSLSAESHGFVRSCYKTGMTPTEYFFHAMGGREGLVDQAVRTAQS 824

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 799
           GYM RRL+ AL+DL ++YD SVR++ G IVQF YGDDG+DPA  +   G+ ++ D++  K
Sbjct: 825 GYMQRRLVNALQDLKVEYDTSVRDSKGMIVQFTYGDDGVDPAKAD--HGKSVDLDKIFTK 882

Query: 800 VKA 802
           VK+
Sbjct: 883 VKS 885


>gi|393247601|gb|EJD55108.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Auricularia delicata TFB-10046 SS5]
          Length = 1775

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 303/773 (39%), Positives = 451/773 (58%), Gaps = 51/773 (6%)

Query: 35  CGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFL 94
           CG++  +++K    L +++ +SK  + +Q+                    +  P  V   
Sbjct: 177 CGHVQPLIRKEGLKLFLVYKKSKDEDEMQD------------------KRMFMPAEVHNT 218

Query: 95  FKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRI 150
            K++ D+D  +L LSE   RP+ +I+T + VPP  +RPS+ +DG +  +E+D+T +L  I
Sbjct: 219 LKKIPDSDLALLGLSEAYARPDWMILTVLPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDI 278

Query: 151 IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRL 209
           ++ + ++++   E   A       + LQ  VA Y+++D+ G+P ++Q + RP+     RL
Sbjct: 279 LKASMAVRRCEQEGAPAHVITDHEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARL 338

Query: 210 KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
           KGK+GR RGNL GKRV+++ RTVI+ DPNL++ +V +P  +A  LTYPERV+ +NIE L+
Sbjct: 339 KGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPRSIAMTLTYPERVTPYNIEYLQ 398

Query: 270 QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQP 329
             ++NGP +YPGAR +    G    L  ++  +    L+ G IV+RHL+DGD VLFNRQP
Sbjct: 399 TLVRNGPREYPGARYVVRDTGERIDL--RYNKKADAFLQYGWIVERHLKDGDYVLFNRQP 456

Query: 330 SLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQ 389
           SLH+MS+M HR +IMP+ T R N SV  PYNADFDGDEMNMH+PQ+EE R E   +  V 
Sbjct: 457 SLHKMSMMSHRVKIMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVP 516

Query: 390 NNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAIL 449
             + +P+  + ++   QD L     +T +DTF D  A   +  ++ D    +  PTPAIL
Sbjct: 517 RQIISPQANKPVMGIVQDTLCGIRKLTLRDTFLDWHAVQNILLWVPDWDGTI--PTPAIL 574

Query: 450 KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFV 509
           KP  LWTGKQ+ S+ I    N+         +   SN L                +DG +
Sbjct: 575 KPKPLWTGKQILSLAIPRGINI-----ARSSDPPSSNPLT---------------DDGML 614

Query: 510 YFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSI 569
              N +++ G + K T+G   + GL  V+ R+ G     G    L  +   W+ ++GFSI
Sbjct: 615 -IENGDILYGVVDKKTVGAA-QGGLIHVVFREKGPEVCRGLFTGLQTVVNYWLFHNGFSI 672

Query: 570 GI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILN 628
           GI D +  K  ++  K ++      V  ++  + +  +L+ KPG    +T E  +   LN
Sbjct: 673 GIGDTIADKGTMAYVKERIGKARANVQQLQ-DDAHMARLKAKPGMTIRETFEREVERELN 731

Query: 629 RIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRS 688
           + R+D G++   SL   N+   M   GSKGS INISQM   VGQQSV G+R P GF  R+
Sbjct: 732 QARDDTGQSAQKSLKDDNNVKQMVTAGSKGSFINISQMSVFVGQQSVEGKRIPFGFKHRT 791

Query: 689 LPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIK 748
           LPHF +    P A+GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+TGY+ RRL+K
Sbjct: 792 LPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 851

Query: 749 ALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVK 801
           ALED+++ YD +VRN+ G ++QF+YG+DGMD A +E ++ E  + D    +VK
Sbjct: 852 ALEDVTVCYDGTVRNSLGDLIQFIYGEDGMDGAFIERQTIESFHIDNKRFEVK 904



 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/389 (32%), Positives = 196/389 (50%), Gaps = 51/389 (13%)

Query: 905  GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL 964
            G   G + AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEIIN A  I TP  T  L
Sbjct: 1071 GEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAANIKTPSHTVYL 1130

Query: 965  --ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINAD 1022
              E   + N A+ V+  +  T L  V  +++I       + +I  D + ++      + D
Sbjct: 1131 TPEVAADPNRAKTVQTDLAYTTLRTVTSAVEIFYDPDPTATIIDEDRDFVEAFFAIPDED 1190

Query: 1023 IVKESIVQTPKI-KLKQQHIKVLDFRKLEIFPPVDKSKIH-------FELYSLKNVLPMV 1074
            +  +  +Q+P + +L+    K+LD RKL++      S+I        F ++S  N   +V
Sbjct: 1191 VESKLHLQSPWLLRLELDRAKMLD-RKLDM--SYVASRIAENFMTDLFVIWSDDNSDKLV 1247

Query: 1075 I-----------------------------------VKGIKTVERVVIAEKEKEKRKVK- 1098
            I                                   ++G++ + RV + +++K   +   
Sbjct: 1248 IRCRVVGSLDKDEDSRMDEEDVFYRQLENTMLNSVSLRGVEGISRVFLMKQDKIVTRPDG 1307

Query: 1099 --ENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINE 1156
              EN +  ++ L   G  L+ +M  EG+D  KT SN   EV + LG+EAAR  ++ E+  
Sbjct: 1308 KIENLKDSEWVLETTGVNLKTIMTVEGVDYSKTHSNSCTEVFKVLGVEAARASLLKELRS 1367

Query: 1157 TMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASV 1216
             ++  G  ++ RH+ LL DLMT RG ++ ITR GI + D   LM  SFE+T + L +A+ 
Sbjct: 1368 VIEFDGSYVNYRHLALLCDLMTCRGSIMAITRHGINRADTGALMRCSFEETVEILMDAAA 1427

Query: 1217 NGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             G  D   G++E ++ G   P+GTG   +
Sbjct: 1428 IGEKDDCHGIAENVLFGQMAPMGTGAFDV 1456


>gi|324120508|dbj|BAJ78645.1| RNA polymerase II largest subunit [Lepidocampa weberi]
          Length = 1558

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 298/815 (36%), Positives = 463/815 (56%), Gaps = 42/815 (5%)

Query: 55  RSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ER 111
           + K+  +  E  +   H  E      +A   L    V  +F+ ++D +C +L +     R
Sbjct: 181 QPKIRRAALELTAEWKHLNEDSQEKKIA---LTAERVHEIFRHISDEECYILGMDPKFAR 237

Query: 112 PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSL 171
           P+ +I+T + VPP+ +RP+V+M GS  N++D+T +L  II+ N  L++   E  +A   L
Sbjct: 238 PDWMIVTVLPVPPLCVRPAVVMFGSARNQDDLTHKLSDIIKANNELKRN-EETGAATHIL 296

Query: 172 A-GWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
           +   + LQ  VA  +++D+ G+P +MQ + RPL     RLKGK+GR RGNL GKRV+++ 
Sbjct: 297 SENVKMLQFHVATLVDNDMPGLPRAMQKSGRPLKAIKARLKGKEGRIRGNLMGKRVDFSA 356

Query: 230 RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
           RTVI+PDPNL+I +V +P  +A+ LT+PE V+  NI+K+++ ++ G  +YPGA+ I   D
Sbjct: 357 RTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYI-IRD 415

Query: 290 GTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 349
              R+          + L+ G  V+RH+ DGD+++FNRQP+LH+MS+M HR +++PW T 
Sbjct: 416 NDERIDLRFHPKSSDLHLQCGYKVERHIRDGDLIIFNRQPTLHKMSMMGHRVKVLPWSTF 475

Query: 350 RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFL 409
           R N SV +PYNADFDGDEMN+HVPQ+ E R E   +      + TP+  + ++   QD L
Sbjct: 476 RMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHITTRQIITPQANKPVMGIVQDTL 535

Query: 410 TSSFLITRKDTFYDRAAF--SLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRP 467
           T+   +T++D F ++      LM   + DG     +P PAILKP  LWTGKQ+FS++I  
Sbjct: 536 TAVRKMTKRDVFLEKEQMFNVLMHLPIWDG----KMPQPAILKPKPLWTGKQVFSLIIPG 591

Query: 468 HANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLG 527
           + NM          +T+S      + +++   + + P D  V   + EL+ G L K TLG
Sbjct: 592 NVNMI---------RTHS---AHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLG 639

Query: 528 NGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKL 587
             +   L  +   + G          +  +   W+   G SIGI D     +   +  K 
Sbjct: 640 T-SAGSLLHICFVELGHEVCGQFYGNIQTVINNWLLLEGHSIGIGDSIADPQTYLEIQKT 698

Query: 588 ISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNS 647
           I +  E     I++ +  +L+  PG    QT E  +  ILN  R+  G +   SL   N+
Sbjct: 699 IKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNN 758

Query: 648 PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVAN 707
              M   GSKGS INISQ++ACVGQQ+V G+R P GF  R+LPHF +    P ++GFV N
Sbjct: 759 LKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVEN 818

Query: 708 SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
           S+ +GL+ +EFFFH MGGREGL+DTAVKTA+TGY+ RRLIKA+E + + YD ++RN+ G 
Sbjct: 819 SYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSVGQ 878

Query: 768 IVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAA 827
           ++Q  YG+DG+   ++E +S   +       + K    P+ +RYL      +I+++ + +
Sbjct: 879 LIQLRYGEDGLAGEHVEFQSLPTVKLSNRAFEKKFKFDPSNERYLRRVFTEDIMKEVMGS 938

Query: 828 ----------YGKESCSEAFLNSLRKFFEGQQDKL 852
                     +G+ S      +SLR+ F   ++K+
Sbjct: 939 GDVISGLEKEWGQLSSDR---DSLRQIFPSGENKV 970



 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 132/414 (31%), Positives = 206/414 (49%), Gaps = 49/414 (11%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R++  +V+ G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1053 LSSEAFEWLIGEIETRFQQAQVQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1112

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENA--ARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN +K+   P +T  L  N   +A  A+ V  R+E T L +V  +  I    
Sbjct: 1113 GVPRLKEIINISKKPKAPSLTVFLTGNAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 1172

Query: 999  RLASIVIALDMETIQ----------------------DAHLCINADIVKESIVQ------ 1030
               + VIA D E +                       D     +  +  E I +      
Sbjct: 1173 DPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGF 1232

Query: 1031 ------------TPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NVLPMVIVK 1077
                          K+ L+ + +   D +  E    VDK +    L  ++ N+L  + ++
Sbjct: 1233 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQ 1292

Query: 1078 GIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKS 1131
            GI+ + +V +   + + +K   V + GE K   ++ L  +GT L  V+    +D  +T S
Sbjct: 1293 GIEAIAKVYMHLPQTDSKKRIIVTDTGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTYS 1352

Query: 1132 NHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGI 1191
            N I E+   LGIEA R  +  E+N  +  +G+ ++ RH+ LL D+MT +G ++ ITR GI
Sbjct: 1353 NDICEIFSVLGIEAVRKSVEKEMNMVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1412

Query: 1192 QKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             + D   LM  SFE+T D L +A+ +   D + GVSE II+G    LGTG   +
Sbjct: 1413 NRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIILGQLPRLGTGCFDL 1466


>gi|110669645|gb|ABG81917.1| RNA polymerase II largest subunit, partial [Hypocenomyce scalaris]
          Length = 1027

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 292/710 (41%), Positives = 425/710 (59%), Gaps = 37/710 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QSN 139
           L P   L +F+ ++D + + + LS    RPE +IIT + VPP  +RPS+ +DG+      
Sbjct: 147 LTPQMALNIFRHISDEEIKKMGLSNDYVRPEWMIITVLPVPPPPVRPSISVDGTGQGMRG 206

Query: 140 ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-V 198
           E+D+T +L  II+ N ++++   E + A  S    + LQ  VA Y+++D+ G P ++Q  
Sbjct: 207 EDDLTYKLGDIIRANGNVRRCETEGSPAHISKDFEDLLQFHVATYMDNDIAGQPQALQKS 266

Query: 199 ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYPE
Sbjct: 267 GRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPE 326

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            V+ +NI KL Q ++NGP+++PGA+ +   D   R+     +    + L+ G  V+RH+ 
Sbjct: 327 TVAPYNIHKLHQLVKNGPNEHPGAKYV-IRDSGERIDLRHHKRAGEIMLQYGWKVERHIV 385

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD ++FNRQPSL++ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE 
Sbjct: 386 DGDFIIFNRQPSLYKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 445

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
           R E   L  V  N+ +P+    L+   QD L   + + R+D F  +     +  ++ D  
Sbjct: 446 RAEVSQLCMVPLNIVSPQRNGPLMGIVQDTLCGVYKMCRRDVFLTKEQVMNILLWVPD-W 504

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           D V +P PAILKP   WTGKQ+ S++I    N                 LIR        
Sbjct: 505 DGV-IPQPAILKPRPKWTGKQIISLVIPAGLN-----------------LIRPSA----- 541

Query: 499 IETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
            E + P ND  ++    EL+ G   K T+G  +  G+  ++  + G  A     N    +
Sbjct: 542 -EGLSPANDDGLFVHGGELMYGLFVKKTIG-ASGGGIIHIIFNEKGPEAAMNFFNGAQTV 599

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
              W+ ++GFSIGI D  P +    K +  +  +  +V ++  +   E  L+  PG +  
Sbjct: 600 VNYWLLHNGFSIGIGDTIPDRSTIQKIENAVNKQKADVADI-TQSATENTLESLPGMNVR 658

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           +T E+ ++  LN+ R+DAG A   SL   N+ + M++ GSKGS INISQM A VGQQSV 
Sbjct: 659 ETFESKVSKALNKARDDAGTATEDSLKDLNNAIQMARSGSKGSTINISQMTAVVGQQSVE 718

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAVKT
Sbjct: 719 GKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 778

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           A+TGY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D  ++E +
Sbjct: 779 AETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEAQ 828


>gi|312076520|ref|XP_003140898.1| DNA-directed RNA polymerase II largest subunit [Loa loa]
          Length = 1875

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 290/714 (40%), Positives = 428/714 (59%), Gaps = 34/714 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L     L +FK ++D+DC +L +  R   P+ +I   I VPP+ +RP+V+  GS  N++
Sbjct: 207 VLTAERALEIFKSISDSDCLILGMDPRYARPDWMIAQVIPVPPLTVRPAVVTFGSARNQD 266

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQVA 199
           D+T +L  I++TN  L++   EAN A   +   +   LQ  VA  I++ + G+P + Q  
Sbjct: 267 DLTHKLSDIVKTNNQLKRN--EANGAAAHVLAEDVKLLQYHVATLIDNSIPGLPAATQKG 324

Query: 200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RPL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I  V +P  +A+ +T+PE
Sbjct: 325 GRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLPIDTVGVPRTIAQNMTFPE 384

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            V+  NI+KL++ +  G  +YPGA+ I   +G ARV          + L+ G  V+RH++
Sbjct: 385 IVTPFNIDKLQELVNRGDSQYPGAKYIIRENG-ARVDLRYHPRAADLHLQPGYRVERHMK 443

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD+++FNRQP+LH+MS+M H+ +I+PW T R N SV  PYNADFDGDEMN+H+PQ+ E 
Sbjct: 444 DGDIIVFNRQPTLHKMSMMGHKVKILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLET 503

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYD--RAAFSLMCCYMGD 436
           + E   +  V   L TP+  + ++   QD LT+  ++T++D F +  R    LM     D
Sbjct: 504 KAEVSEIAMVPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIELPRMMDLLMQMPNWD 563

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
           G     +P PAILKP  LWTGKQ+F+++I  + N+          +T+S     T  D+E
Sbjct: 564 G----KVPQPAILKPKPLWTGKQVFTLIIPGNVNVL---------RTHS-----THPDDE 605

Query: 497 IR--IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                + + P D  V   + EL+SG +   T+G    + L+ V L + G    +   + +
Sbjct: 606 DNGPYKWISPGDTKVIIEHGELLSGIICSRTIGRSAGNLLHVVTL-ELGWEVAAHFYSHI 664

Query: 555 AKLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
             +   W+   G +IGI D +  +    D +  +     +V  V  K +N+ +L+  PG 
Sbjct: 665 QTVVNAWLVAEGHTIGIGDTIADQATYRDIQETIRKAKLDVVEVIEKAHND-ELEPTPGN 723

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              QT E ++  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ
Sbjct: 724 TLRQTFENMVNRILNDARDRTGGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIACVGQQ 783

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
           +V G+R P GF  R+LPHF +    P +KGFV NS+ +GL+ +EFFFH MGGREGL+DTA
Sbjct: 784 NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 843

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           VKTA+TGY+ RRLIKA+E + + YD +VRN+ G +VQ  YG+DG+D   +E +S
Sbjct: 844 VKTAETGYIQRRLIKAMESVMVSYDGTVRNSLGQLVQLRYGEDGLDGMWVENQS 897



 Score =  174 bits (442), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/414 (30%), Positives = 201/414 (48%), Gaps = 50/414 (12%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +  +  E  I    SR++   V+ G  +GAI AQS+GEP TQMTL TFH+AGV++ N+T 
Sbjct: 1057 LNSEGFEWLIGEIESRFKQAIVQPGEMVGAIAAQSLGEPATQMTLNTFHYAGVSAKNVTL 1116

Query: 941  GVPRIKEIINGAKRISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            GVPR+KEIIN +K+  TP +T  L+     D E A  V+  ++E T L +V  +  I   
Sbjct: 1117 GVPRLKEIINVSKKPKTPSLTVFLQGIAAKDAEKAKDVL-CKLEHTTLRKVTANTAIYYD 1175

Query: 998  SRLASIVIA----------------------------LDMETIQDAHLCINA--DIVKES 1027
                + VI                             LD   + D  L + A  D + + 
Sbjct: 1176 PDPKNTVIEEDQEWVNIFYEMPDFDPSRCSPWLLRIELDRRRMTDKKLTMEAIADKIHQG 1235

Query: 1028 IVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK----------NVLPMVIVK 1077
                  +     + + L FR        DK     ++  ++          N+L  + ++
Sbjct: 1236 FGDDLNVIYTDDNAEKLVFRLRITNQESDKGNEDEQVERMEDDVFLRCIETNMLSDLTLQ 1295

Query: 1078 GIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKS 1131
            GI+ + +V + +   + +K   +  +G  K   ++ L  +GT L  V+  + +D  +T S
Sbjct: 1296 GIEAITKVYMHKPTTDDKKRVVITPDGGFKAIPEWLLETDGTALAKVLSEQNVDPVRTTS 1355

Query: 1132 NHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGI 1191
            N I E+ + LGIEA R  I  E+N  +   G  ++ RH+ LL D+MT +G ++ ITR GI
Sbjct: 1356 NDICEIFEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 1415

Query: 1192 QKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             + +   LM  SFE+TAD L  A+V+   D ++GVSE I++G     GTG   +
Sbjct: 1416 NRQEVGALMRCSFEETADILMEAAVHAEQDPVKGVSENIMLGQLARAGTGCFDL 1469


>gi|430812931|emb|CCJ29676.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 1762

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 292/722 (40%), Positives = 433/722 (59%), Gaps = 38/722 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P+ V  +FK ++  D   + L+E   RP+ +IIT + VPP ++RPS+ +DG+   E+
Sbjct: 205 LLTPLEVYTVFKHISSEDMAKMGLNEEYARPDWMIITVLPVPPPSVRPSISVDGTCRGED 264

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VAR 200
           D+T +L  II+ NA++++   E           + LQ  VA Y+++D+ G P ++Q   R
Sbjct: 265 DLTHKLSDIIKANANVRRYEQEGAPMHVVSEYEQLLQFHVATYMDNDIAGQPQALQKTGR 324

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + E+ +P  +ARILTYPE V
Sbjct: 325 PLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRSIARILTYPETV 384

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           + +NI KL++ ++NGP+++PGA+ I   D   R+     +    + L+ G  V+RH+ DG
Sbjct: 385 TPYNIHKLQELVRNGPNEHPGAKYI-IRDTGERIDLRYHKRAGDIPLQYGWRVERHITDG 443

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           DVV+FNRQPSLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMN+HVPQ+EE R 
Sbjct: 444 DVVIFNRQPSLHKMSMMGHRVKVMPYSTFRINLSVTPPYNADFDGDEMNLHVPQSEETRA 503

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DRAAFSLMCCYMGDGM 438
           E + +  V   + +P++ + ++   QD L     +TR+D F   D+    L+     DG 
Sbjct: 504 EIIEICMVPKQIVSPQSNKPVMGIVQDTLAGVKKLTRRDNFLSKDQVMNILLWVPEWDG- 562

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
              ++P PAI+KP  +WTGKQ+ S++I    N                  IR   D+E +
Sbjct: 563 ---NMPPPAIIKPKAMWTGKQILSMVIPKGIN-----------------FIR---DDE-K 598

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
              M P+D  +   N E+I G + K T+G  ++ GL   ++R+ G        N +  + 
Sbjct: 599 QTPMTPDDTGMMLENGEIIYGIVDKKTVG-ASQGGLVHTIMREKGPEVCRVFFNGIQMVV 657

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
             W+ ++GFSIGI D              I+E        I +  + +LQ++PG    ++
Sbjct: 658 NYWLLHNGFSIGIGDTIADANTMRDITNTIAEAKAKVQEIILDAQQNRLQVEPGMTLRES 717

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            E+ ++  LN+ R+ AG++   SL   N+   M   GSKGS INISQM ACVGQQ V G+
Sbjct: 718 FESKVSRALNQARDTAGRSAQMSLKDSNNVKQMVTAGSKGSFINISQMSACVGQQIVEGK 777

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R P GF  R+LPHF +    P + GF+ NS+  GL+  EFFFH M GREGL+DTAVKTA+
Sbjct: 778 RIPYGFKYRTLPHFTKDDYSPESGGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 837

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL-----NF 793
           TGY+ RRL+KALED+ ++YD +VRN+ G I+Q +YG+DG+D  ++E ++ + L      F
Sbjct: 838 TGYIQRRLVKALEDVMVKYDGTVRNSLGDIIQLVYGEDGLDGVSVEYQNLDSLRLSNEEF 897

Query: 794 DR 795
           DR
Sbjct: 898 DR 899



 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 131/387 (33%), Positives = 192/387 (49%), Gaps = 54/387 (13%)

Query: 905  GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL 964
            G  +G + AQSIGEP TQMTL TFH+AGV+S +IT GVPR+KEI+N AK I TP +T  L
Sbjct: 1066 GEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKSITLGVPRLKEILNVAKTIKTPSLTIYL 1125

Query: 965  --ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINAD 1022
              E + +  +A+ V+  IE T L  V    +I         VI  D  T  +A   I  +
Sbjct: 1126 TPEVSKDMESAKQVQTAIEHTTLKTVTSVTEIFYDPDPQQTVIEED-RTFVEAFFAIPDE 1184

Query: 1023 IVKESIVQTPK--IKLKQQHIKVLDFRKLEIFPPVDK-----SKIHFELYSLKNVLPMVI 1075
             V+ ++ +     ++L+    K+LD +KL +     K      K  F ++S  N   +VI
Sbjct: 1185 DVEANLHRQSSWLLRLELDRAKMLD-KKLSMSDVAAKITESFHKDLFVIWSEDNADKLVI 1243

Query: 1076 --------------------------------------VKGIKTVERVVIAEKEKEKRKV 1097
                                                  ++G+  + RV + E +   +  
Sbjct: 1244 RCRVIKDEEKSFDDDDDDPIEEDVLLKRIESHMLESISLRGVPNISRVFMMEHKTVYQS- 1302

Query: 1098 KENGE---KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEI 1154
             ENGE    +++ L  +G  L  VM  E +D  +T SN   E+ Q LGIEA R  ++ E+
Sbjct: 1303 -ENGEFVRGEEWVLETDGINLAEVMAVENVDPRRTYSNSFVEILQVLGIEATRAALLKEL 1361

Query: 1155 NETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA 1214
               ++  G  ++ RH+ LLAD MT RG ++ ITR GI + +  VLM  SFE+T + L  A
Sbjct: 1362 RNVIEFDGSYVNYRHLSLLADTMTSRGHLMAITRHGINRAETGVLMRCSFEETVEILMEA 1421

Query: 1215 SVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            +  G  D   G+SE I++G   PLGTG
Sbjct: 1422 AAAGEMDDCRGISENIMLGQLAPLGTG 1448


>gi|393905343|gb|EFO23174.2| DNA-directed RNA polymerase II largest subunit [Loa loa]
          Length = 1870

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 290/714 (40%), Positives = 428/714 (59%), Gaps = 34/714 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L     L +FK ++D+DC +L +  R   P+ +I   I VPP+ +RP+V+  GS  N++
Sbjct: 207 VLTAERALEIFKSISDSDCLILGMDPRYARPDWMIAQVIPVPPLTVRPAVVTFGSARNQD 266

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQVA 199
           D+T +L  I++TN  L++   EAN A   +   +   LQ  VA  I++ + G+P + Q  
Sbjct: 267 DLTHKLSDIVKTNNQLKRN--EANGAAAHVLAEDVKLLQYHVATLIDNSIPGLPAATQKG 324

Query: 200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RPL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I  V +P  +A+ +T+PE
Sbjct: 325 GRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLPIDTVGVPRTIAQNMTFPE 384

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            V+  NI+KL++ +  G  +YPGA+ I   +G ARV          + L+ G  V+RH++
Sbjct: 385 IVTPFNIDKLQELVNRGDSQYPGAKYIIRENG-ARVDLRYHPRAADLHLQPGYRVERHMK 443

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD+++FNRQP+LH+MS+M H+ +I+PW T R N SV  PYNADFDGDEMN+H+PQ+ E 
Sbjct: 444 DGDIIVFNRQPTLHKMSMMGHKVKILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLET 503

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYD--RAAFSLMCCYMGD 436
           + E   +  V   L TP+  + ++   QD LT+  ++T++D F +  R    LM     D
Sbjct: 504 KAEVSEIAMVPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIELPRMMDLLMQMPNWD 563

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
           G     +P PAILKP  LWTGKQ+F+++I  + N+          +T+S     T  D+E
Sbjct: 564 G----KVPQPAILKPKPLWTGKQVFTLIIPGNVNVL---------RTHS-----THPDDE 605

Query: 497 IR--IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                + + P D  V   + EL+SG +   T+G    + L+ V L + G    +   + +
Sbjct: 606 DNGPYKWISPGDTKVIIEHGELLSGIICSRTIGRSAGNLLHVVTL-ELGWEVAAHFYSHI 664

Query: 555 AKLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
             +   W+   G +IGI D +  +    D +  +     +V  V  K +N+ +L+  PG 
Sbjct: 665 QTVVNAWLVAEGHTIGIGDTIADQATYRDIQETIRKAKLDVVEVIEKAHND-ELEPTPGN 723

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              QT E ++  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ
Sbjct: 724 TLRQTFENMVNRILNDARDRTGGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIACVGQQ 783

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
           +V G+R P GF  R+LPHF +    P +KGFV NS+ +GL+ +EFFFH MGGREGL+DTA
Sbjct: 784 NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 843

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           VKTA+TGY+ RRLIKA+E + + YD +VRN+ G +VQ  YG+DG+D   +E +S
Sbjct: 844 VKTAETGYIQRRLIKAMESVMVSYDGTVRNSLGQLVQLRYGEDGLDGMWVENQS 897



 Score =  174 bits (442), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/414 (30%), Positives = 201/414 (48%), Gaps = 50/414 (12%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +  +  E  I    SR++   V+ G  +GAI AQS+GEP TQMTL TFH+AGV++ N+T 
Sbjct: 1052 LNSEGFEWLIGEIESRFKQAIVQPGEMVGAIAAQSLGEPATQMTLNTFHYAGVSAKNVTL 1111

Query: 941  GVPRIKEIINGAKRISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            GVPR+KEIIN +K+  TP +T  L+     D E A  V+  ++E T L +V  +  I   
Sbjct: 1112 GVPRLKEIINVSKKPKTPSLTVFLQGIAAKDAEKAKDVL-CKLEHTTLRKVTANTAIYYD 1170

Query: 998  SRLASIVIA----------------------------LDMETIQDAHLCINA--DIVKES 1027
                + VI                             LD   + D  L + A  D + + 
Sbjct: 1171 PDPKNTVIEEDQEWVNIFYEMPDFDPSRCSPWLLRIELDRRRMTDKKLTMEAIADKIHQG 1230

Query: 1028 IVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK----------NVLPMVIVK 1077
                  +     + + L FR        DK     ++  ++          N+L  + ++
Sbjct: 1231 FGDDLNVIYTDDNAEKLVFRLRITNQESDKGNEDEQVERMEDDVFLRCIETNMLSDLTLQ 1290

Query: 1078 GIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKS 1131
            GI+ + +V + +   + +K   +  +G  K   ++ L  +GT L  V+  + +D  +T S
Sbjct: 1291 GIEAITKVYMHKPTTDDKKRVVITPDGGFKAIPEWLLETDGTALAKVLSEQNVDPVRTTS 1350

Query: 1132 NHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGI 1191
            N I E+ + LGIEA R  I  E+N  +   G  ++ RH+ LL D+MT +G ++ ITR GI
Sbjct: 1351 NDICEIFEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 1410

Query: 1192 QKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             + +   LM  SFE+TAD L  A+V+   D ++GVSE I++G     GTG   +
Sbjct: 1411 NRQEVGALMRCSFEETADILMEAAVHAEQDPVKGVSENIMLGQLARAGTGCFDL 1464


>gi|324120576|dbj|BAJ78679.1| RNA polymerase II largest subunit [Inocellia japonica]
          Length = 1913

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 297/779 (38%), Positives = 449/779 (57%), Gaps = 30/779 (3%)

Query: 64  EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNI 120
           +  +   H  E      +A   L+   V  +FK +TD +C +L +     RP+ +I+T +
Sbjct: 190 DLTAEWKHVNEDSQEKKIA---LSAERVWEIFKHITDEECFILGMDPKFARPDWMIVTVL 246

Query: 121 AVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
            VPP+++RP+V+M GS  N++D+T +L  I+++N  L +      +A       + LQ  
Sbjct: 247 PVPPLSVRPAVVMYGSARNQDDLTHKLADIVKSNNELARNEASGAAAHVISENIKMLQFH 306

Query: 181 VAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
           VA  +++D+ G+P +MQ + +PL     RLKGK+GR RGNL GKRV+++ RTVI+PDPNL
Sbjct: 307 VATLVDNDMPGLPRAMQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNL 366

Query: 240 KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF 299
           +I +V +P  +A+ LT+PE V+  NIEK+ + +Q G  +YPGA+ I   +G    L  +F
Sbjct: 367 RIDQVGVPRSIAQNLTFPEIVTPFNIEKMMELVQRGNSQYPGAKYIVRDNGERIDL--RF 424

Query: 300 RNQLA-VELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNP 358
             + + + L+ G  V+RH++DGD+V+FNRQP+LH+MS+M HR +++PW T R N S  +P
Sbjct: 425 HPKPSDLHLQCGYKVERHIKDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSP 484

Query: 359 YNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK 418
           YNADFDGDEMN+HVPQ+ E R E   +      + TP+  + ++   QD LT+   +T++
Sbjct: 485 YNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKR 544

Query: 419 DTFYDRAAFS--LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
           D F ++      LM   + DG     +P PAILKP  LWTGKQ+FS++I  +      VN
Sbjct: 545 DVFIEKEQMMNLLMFLPIWDG----KMPQPAILKPKPLWTGKQVFSLIIPGN------VN 594

Query: 477 LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
           L     T+ +       +++   + + P D  V   + ELI G L K TLG  +   L  
Sbjct: 595 LIRTHSTHPDD------EDDGPYKWISPGDTKVMVEHGELIMGILCKRTLG-ASAGSLLH 647

Query: 537 VLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCN 596
           +   + G          +  +   W+   G SIGI D     +   +  K I +  E   
Sbjct: 648 ICFLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVI 707

Query: 597 VKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGS 656
             I++ +  +L+  PG    QT E  +  ILN  R+  G +   SL   N+   M   GS
Sbjct: 708 EVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGS 767

Query: 657 KGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSAT 716
           KGS INISQ++ACVGQQ+V G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ +
Sbjct: 768 KGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPS 827

Query: 717 EFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDD 776
           EF+FH MGGREGL+DTAVKTA+TGY+ RRLIKA+E + + YD +VRN+ G ++Q  YG+D
Sbjct: 828 EFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGED 887

Query: 777 GMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSE 835
           G+    +E +S   +       + K    P+ +RYL  +  +E V KQL + G +   E
Sbjct: 888 GLCGEMVEFQSLPTVKLSNRAFENKFKFDPSNERYLR-RIFAEDVVKQLMSSGGDVIQE 945



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 105/183 (57%), Gaps = 6/183 (3%)

Query: 1069 NVLPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAE 1122
            N+L  + ++GI+ + +V +   + + +K   V E GE K   ++ L  +GT +  V+   
Sbjct: 1288 NMLSDMTLQGIEAIAKVYMHLPQTDSKKRIVVTETGEFKAIAEWLLETDGTSMMKVLSER 1347

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
             +D  +T SN I E+   LGIEA R  +  E+N  ++ +G+ ++ RH+ LL D+MT +G 
Sbjct: 1348 DVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGH 1407

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            ++ ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    +GTG 
Sbjct: 1408 LMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGC 1467

Query: 1243 LKI 1245
              +
Sbjct: 1468 FDL 1470



 Score = 93.6 bits (231), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 77/135 (57%), Gaps = 4/135 (2%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R++  +   G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1054 LSSEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1113

Query: 941  GVPRIKEIINGAKRISTPIITAEL---ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            GVPR+KEIIN +K+   P +T  L      D E A  V+  R+E T L +V  +  I   
Sbjct: 1114 GVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL-CRLEHTTLRKVTANTAIYYD 1172

Query: 998  SRLASIVIALDMETI 1012
                + VI+ D E +
Sbjct: 1173 PDPQNTVISEDQEFV 1187


>gi|397135973|gb|AFO11481.1| RNA polymerase I, partial [Candida caseinolytica]
          Length = 872

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 290/710 (40%), Positives = 428/710 (60%), Gaps = 37/710 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  +L +F+ ++  D + L L+E   RPE LII+ + VPP  +RPS+ ++ S   E+D
Sbjct: 15  LTPSEILNVFRHISPKDIQNLGLNEDYARPEWLIISVLPVPPPPVRPSIAINDSARGEDD 74

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA-R 200
           +T +L  I++ +A++Q+ L E   A   +  +ETL Q  VA Y+++D+  VP ++Q + R
Sbjct: 75  LTSKLADILKASANVQRCLQEGAPA-HVINEFETLLQYHVATYMDNDIASVPQALQKSGR 133

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           P+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + +V +P  +AR LTYPE V
Sbjct: 134 PVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDQVGVPRSIARTLTYPEIV 193

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           + +NI++L Q +QNGP+++PGA+ +   D   R+     +    + L+ G  V+RHL+D 
Sbjct: 194 TPYNIQRLSQLVQNGPNEHPGAKYV-IRDTGERIDLRYHKRAGDIPLQYGWTVERHLQDD 252

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D VLFNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R 
Sbjct: 253 DPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRA 312

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYMGDGM 438
           E   L  V   + +P++ + ++   QD L     +T +DTF  Y++    L+     DG 
Sbjct: 313 ELTQLAMVPLQIVSPQSNKPVMGIVQDSLCGIRKLTLRDTFLNYEQVMNVLLWVPDWDGQ 372

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
               +P PAI+KP  LWTGKQ+ S+ I    N                 LIR + +  + 
Sbjct: 373 ----VPIPAIMKPKPLWTGKQIVSLCIPKGIN-----------------LIRIDDNNPLS 411

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  +   N E+I G + K T+G     GL   ++R+ G          +  + 
Sbjct: 412 ----SPKDNGMLIENGEIIFGVVDKKTVG-ATGGGLVHTIMREKGPQVCCNFFTGIQMVV 466

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+ ++GFSIGI D +     + D    + +   +V ++ I++  E +L  +PG    +
Sbjct: 467 NYWLLHNGFSIGIGDTIADAATMRDITNTITAAKEKVQDI-IRDAQENRLPAEPGMTLRE 525

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           + E  ++  LN+ R+  G++   SL   N+   M   GSKGS INISQM ACVGQQ V G
Sbjct: 526 SFEHKVSQTLNQARDTTGRSAEMSLKDTNNVKQMVTAGSKGSFINISQMSACVGQQIVEG 585

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF DRSLPHF +    P +KGF+ NS+  GL+  EFFFH M GREGL+DTAVKTA
Sbjct: 586 KRIPFGFKDRSLPHFTKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTA 645

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           +TGY+ RRL+KALED+ + YD + RN+ G ++QF+YG+DG+D  ++E ++
Sbjct: 646 ETGYIQRRLVKALEDIMVHYDGTTRNSLGDVIQFVYGEDGVDGTSVEKQT 695


>gi|324120550|dbj|BAJ78666.1| RNA polymerase II largest subunit [Tenodera aridifolia]
          Length = 1844

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 297/775 (38%), Positives = 445/775 (57%), Gaps = 34/775 (4%)

Query: 64  EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNI 120
           +  +   H  E      +A   L+   V  + K +TD +C +L +     RP+ +I+T +
Sbjct: 191 DLTAEWKHVNEDSQEKKIA---LSAERVWEILKHITDEECYILGMDPKFARPDWMIVTVL 247

Query: 121 AVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
            VPP+A+RP+V+M GS  N++D+T +L  II+ N  L +      +A   L   + LQ  
Sbjct: 248 PVPPLAVRPAVVMYGSARNQDDLTHKLADIIKANNELMRNEQAGAAAHVILENIKMLQFH 307

Query: 181 VAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
           VA  +++D+ G+P +MQ + +PL     RLKGK+GR RGNL GKRV+++ RTVI+PDPNL
Sbjct: 308 VATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNL 367

Query: 240 KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF 299
           +I +V +P  +A+ +T+PE V+  NI+K+ + ++ G  +YPGA+ I   +G    L  +F
Sbjct: 368 RIDQVGVPRSIAQNMTFPEIVTPFNIDKMYELVRRGNSQYPGAKYIVRDNGERIDL--RF 425

Query: 300 RNQLA-VELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNP 358
             + + + L+ G  V+RH+ DGD+V+FNRQP+LH+MS+M HR +++PW T R N S  +P
Sbjct: 426 HPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSP 485

Query: 359 YNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRK 418
           YNADFDGDEMN+HVPQ+ E R E   +      + TP+  + ++   QD LT+   +T++
Sbjct: 486 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKR 545

Query: 419 DTFYDRAAFS--LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
           D F ++      LM   + DG     +P PAI+KP  LWTGKQ+FS++I  + NM     
Sbjct: 546 DVFLEKEQMMNLLMFLPIWDG----KMPQPAIMKPKPLWTGKQVFSLIIPGNVNMI---- 597

Query: 477 LTVKEKTYSNKLIRTEGDEEIR--IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGL 534
                +T+S     T  DEE     + + P D  V   + EL+ G L K TLG  +   L
Sbjct: 598 -----RTHS-----THPDEEDDGPFKWISPGDTKVMVEHGELVMGILCKKTLGT-SAGSL 646

Query: 535 YSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEV 594
             + + + G          +  +   W+   G SIGI D     +   +  K I +  E 
Sbjct: 647 LHICMLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKED 706

Query: 595 CNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQC 654
               I++ +  +L+  PG    QT E  +  ILN  R+  G +   SL   N+   M   
Sbjct: 707 VIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVS 766

Query: 655 GSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLS 714
           GSKGS INISQ++ACVGQQ+V G+R P GF  R+LPHF +    P ++GFV NS+ +GL+
Sbjct: 767 GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 826

Query: 715 ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYG 774
            +EFFFH MGGREGL+DTAVKTA+TGY+ RRLIKA+E + + YD +VRN+ G ++Q  YG
Sbjct: 827 PSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYG 886

Query: 775 DDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG 829
           +DG+    +E +S   +       + K    P  +RYL  +  +E V K+L   G
Sbjct: 887 EDGLCGETVEFQSLPTIKLSNKAFEKKFKFDPTNERYLR-RIFNEDVLKELMGSG 940



 Score =  177 bits (449), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 134/421 (31%), Positives = 204/421 (48%), Gaps = 63/421 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R++  +   G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1054 LSSEAFEWLIGEIETRFQQAQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1113

Query: 941  GVPRIKEIINGAKRISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            GVPR+KEIIN +K+   P +T  L      D E A  V+  R+E T L +V  +  I   
Sbjct: 1114 GVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL-CRLEHTTLKKVTANTAIYYD 1172

Query: 998  SRLASIVIA----------------------------LDMETIQDAHL------------ 1017
                + VIA                            LD + + D  L            
Sbjct: 1173 PDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAG 1232

Query: 1018 ------CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NV 1070
                  CI  D   E +V   +I +     K  D  +      VDK +    L  ++ N+
Sbjct: 1233 FGDDLNCIFNDDNAEKLVLRIRI-MNSDDNKFQDEEET-----VDKMEDDMFLRCIEANM 1286

Query: 1071 LPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGI 1124
            L  + ++GI+ + +V +   + + +K   + E GE K   ++ L  +GT +  V+    +
Sbjct: 1287 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITETGEFKAIAEWLLETDGTSMMKVLSERDV 1346

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
            D  +T SN I E+   LGIEA R  +  E+N  ++ +G+ ++ RH+ LL D+MT +G ++
Sbjct: 1347 DTNRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLM 1406

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
             ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    LGTG   
Sbjct: 1407 AITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFD 1466

Query: 1245 I 1245
            +
Sbjct: 1467 L 1467


>gi|361124608|gb|EHK96688.1| putative DNA-directed RNA polymerase II subunit rpb1 [Glarea
           lozoyensis 74030]
          Length = 1727

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 303/739 (41%), Positives = 434/739 (58%), Gaps = 46/739 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QSN 139
           + P   L +FK ++ ++   L LS    RPE +IIT + VPP  +RPSV MDG+      
Sbjct: 210 ITPEMALAVFKSISSSEIRDLGLSNDYARPEWMIITVLPVPPPPVRPSVSMDGTGQGMRG 269

Query: 140 ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQ- 197
           E+D+T +L  II+ N +++Q   E + A   L+ +E L Q  VA Y+++D+ G P ++Q 
Sbjct: 270 EDDLTFKLGDIIRANGNVRQAQQEGSPA-HILSDFEALLQYHVATYMDNDIAGTPQALQK 328

Query: 198 VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYP 257
             RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYP
Sbjct: 329 SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYP 388

Query: 258 ERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHL 317
           E V+ +NI  L + ++NGP+ +PGA+ +   DGT R+     +N   V L+ G  V+RH+
Sbjct: 389 ETVTPYNINHLSKLVRNGPNDHPGAKYVMRADGT-RIDLRHNKNSAGVNLEYGWKVERHI 447

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQTEE
Sbjct: 448 VDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEE 507

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMG 435
            R E + L  V  N+ +P+    L+   QD L   + + R+D F  +      L+     
Sbjct: 508 TRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKMCRRDVFITKEHLMNILLWVPEW 567

Query: 436 DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
           DG+    +P PAILKP   WTGKQ+ S++I                     K++      
Sbjct: 568 DGV----IPQPAILKPRPRWTGKQIVSMIIP--------------------KIVNLHTAN 603

Query: 496 EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
           + R +    +DG +     EL+ G L K  +G  +  G+  ++  + G  A     N   
Sbjct: 604 DAREDAPLKDDGLL-VHEGELMFGLLTKKNVG-ASSGGIIHIIFNEQGPDAAMAFFNGCQ 661

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
           ++   W+ ++GFSIGI D  P K   +K +G +  +  EV  +  K     +L+  PG +
Sbjct: 662 RVVNYWLLHNGFSIGIGDTIPDKSTIEKIEGAIQVQKDEVAELTAKA-TANELESLPGMN 720

Query: 615 AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
             +T E++++  LN  R+ AG     SL   N+ + M++ GSKGS INISQM A VGQQS
Sbjct: 721 VRETFESLVSKALNTARDKAGTKTEDSLKDSNNAVQMARSGSKGSTINISQMTALVGQQS 780

Query: 675 VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
           V G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAV
Sbjct: 781 VEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 840

Query: 735 KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF- 793
           KTA+TGY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D   +E +  + +N  
Sbjct: 841 KTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGTIIEKQRVDHINLS 900

Query: 794 -----DRLLMKVKATCPPA 807
                DR  + V     PA
Sbjct: 901 DKAFEDRFRLDVMDDRNPA 919



 Score =  179 bits (454), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 122/405 (30%), Positives = 200/405 (49%), Gaps = 61/405 (15%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A  
Sbjct: 1065 TRFIKSLVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNIASN 1124

Query: 955  ISTPIITAELECND-NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +    E  D ++++A++++  +E T L  V ++ +I     + S  IA D++ ++
Sbjct: 1125 IKTPSMVVYQEGEDASQDSAKLLRSAVEHTNLRSVMQATEIYHDPEIQSTEIADDLDMVE 1184

Query: 1014 -------DAHLCINAD--------------IVKESIVQTPKIKLKQQHIKVLDFRKLEIF 1052
                   + H  ++                + K   V+   IK+K+ + K L      IF
Sbjct: 1185 SFFIIPEEHHDSLDNQSRWLLRLILDRQKMLDKGLRVEDVAIKIKENYPKDLAV----IF 1240

Query: 1053 PPVDKSKIHFELYSLK----------------------NVLPMVIVKGIKTVERVVIAEK 1090
               +  K    +  +K                      ++L  + ++G+  V+R  +   
Sbjct: 1241 SDNNAEKQVIRIRMIKAGDGKYDDDDIEEDIMLKRLEAHILDTLTLRGVPGVDRAFL--- 1297

Query: 1091 EKEKRKV----------KENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQT 1140
             KE + +          K +    ++ L   GT L  V+   G+D  +T +NH  +V + 
Sbjct: 1298 NKETKLITTPDGGLLASKSDDRCTEWYLDTSGTSLAQVLTVPGVDTTRTYTNHFIQVLEV 1357

Query: 1141 LGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLM 1200
             GIEAAR  ++ E+ + +   G  ++ RH+ LL D+MT RG ++ ITR GI + D   LM
Sbjct: 1358 FGIEAARSALMRELTQVLAFDGSYVNHRHLALLVDVMTSRGLLMAITRHGINRADTGALM 1417

Query: 1201 LASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
              SFE+T + L  A+  G  D   G+SE +++G   P+GTG L++
Sbjct: 1418 RCSFEETVEILLEAAAIGELDDCRGISENVMLGQLAPMGTGELEV 1462


>gi|380793277|gb|AFE68514.1| DNA-directed RNA polymerase II subunit RPB1, partial [Macaca
           mulatta]
          Length = 1658

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +     RPE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNN-ELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  173 bits (438), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 124/401 (30%), Positives = 197/401 (49%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L      +A R   +  R+E T L +V  +  I       S V+A D E +
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIK------------------------------ 1042
               +   + D+ + S     +++L ++H+                               
Sbjct: 1194 NVYYEMPDFDVARISPWLL-RVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNA 1252

Query: 1043 ---VLDFRKL--------EIFPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEK 1090
               VL  R +        E    VDK      L  ++ N+L  + ++GI+ + +V +   
Sbjct: 1253 EKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLP 1312

Query: 1091 EKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
            + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I E+   LGIE
Sbjct: 1313 QTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIE 1372

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            A R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D   LM  SF
Sbjct: 1373 AVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSF 1432

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1433 EETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|397135804|gb|AFO11397.1| RNA polymerase I, partial [Cyberlindnera americana]
          Length = 870

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 299/749 (39%), Positives = 445/749 (59%), Gaps = 64/749 (8%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  +L +FK ++  DC  L   E   RPE LII+ + VPP  +RPS+  + +Q  E+
Sbjct: 13  LLTPSEILNVFKHISKEDCRKLGFHEDYARPEWLIISVLPVPPPPVRPSISFNDTQRGED 72

Query: 142 DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  I++ N ++Q+  ++ +     + F++L     LQ  VA Y+++D+ G P ++
Sbjct: 73  DLTYKLSDIMKANINVQKLEMDGSPQHVINEFEAL-----LQFHVATYMDNDIAGQPQAL 127

Query: 197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q + RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +AR LT
Sbjct: 128 QKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLT 187

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
           YPE V+ +NI+KL + ++NGP+++PGA+ +IR       + Y K    +   L+ G  V+
Sbjct: 188 YPETVTPYNIQKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIV--LQYGWKVE 245

Query: 315 RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
           RHL D D VLFNRQPSLH+MS+MCHR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 246 RHLMDNDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 305

Query: 375 TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
           +EE R E + +  V   + +P++ +  +   QD L     +T +D+F  YD+    L   
Sbjct: 306 SEETRAELMNICAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFIEYDQMMNILYWI 365

Query: 433 YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
              DG+    +P P ILKP  LWTGKQ+ S+ I    +++ +                  
Sbjct: 366 PEWDGV----IPAPTILKPKPLWTGKQMLSMTIPKGIHLQRF------------------ 403

Query: 493 GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
            DE   +  + PND  +   + +++ G + K T+G  N  GL   ++R+ G  A +    
Sbjct: 404 -DEGTTL--LSPNDNGMLVIDGQILFGVVDKKTVGATNG-GLIHTVMREKGPRACADLFG 459

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKG-KLISENYEVCNVKIKEYN----EGKL 607
            + K+   W+ ++GFSIGI D      ++D    K I+E   +   K++E      + KL
Sbjct: 460 NIQKVVNFWLLHNGFSIGIGDT-----IADAGTMKEITEAIAIAKEKVEEVTLEAQQNKL 514

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
             K G    ++ E  +   LN  R+ AG++   +L   N+   M   GSKGS INI+QM 
Sbjct: 515 TAKHGMTLRESFEDNVIRYLNEARDKAGRSAEVNLKGLNNVKQMVSAGSKGSFINIAQMS 574

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           ACVGQQSV G+R   GF DR+LPHF +    P +KGFV NS+  GL+  EF+FH MGGRE
Sbjct: 575 ACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFYFHAMGGRE 634

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GL+DTAVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D  ++E ++
Sbjct: 635 GLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSMGNIIQFIYGEDGLDAGHVEKQT 694

Query: 788 -----GEPLNFDRL----LMKVKATCPPA 807
                GE   F++     LM  K+T  P+
Sbjct: 695 IDTLPGEDAAFEKRYRIDLMSEKSTIKPS 723


>gi|324120552|dbj|BAJ78667.1| RNA polymerase II largest subunit [Blattella nipponica]
          Length = 1598

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 293/752 (38%), Positives = 437/752 (58%), Gaps = 29/752 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+   V  +FK +TD +C +L +     RP+ +I+T + VPP+++RP+V+M GS  N++D
Sbjct: 210 LSAERVWEIFKHITDEECYILGMDPKFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQDD 269

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  II++N  L +      +A       + LQ  VA  +++D+ G+P +MQ + +P
Sbjct: 270 LTHKLADIIKSNNELIRNEQAGAAAHVISENIKMLQFHVATLVDNDMPGLPRAMQKSGKP 329

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L     RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ +T+PE V+
Sbjct: 330 LKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVT 389

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
             NI+K+++ ++ G  +YPGA+ I   +G  R+          + L+ G  V+RH+ DGD
Sbjct: 390 PFNIDKMQELVRRGNSQYPGAKYIVRDNG-ERIDLRFHPKPSDLHLQCGYKVERHVRDGD 448

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +V+FNRQP+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R E
Sbjct: 449 LVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAE 508

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMD 439
              L      + TP+  + ++   QD LT+   +T++D F ++      LM   + DG  
Sbjct: 509 VENLHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDG-- 566

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR- 498
              +P PAI+KP  LWTGKQ+FS++I  + NM          +T+S     T  DEE   
Sbjct: 567 --KMPQPAIMKPKPLWTGKQVFSLIIPGNVNMI---------RTHS-----THPDEEDDG 610

Query: 499 -IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
             + + P D  V   + EL+ G L K TLG  +   L  +   + G          +  +
Sbjct: 611 PYKWISPGDTKVMVEHGELVMGILCKKTLGT-SAGSLLHICFLELGHEVCGQFYGNIQTV 669

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
              W+   G SIGI D     +   +  K I +  E     I++ +  +L+  PG    Q
Sbjct: 670 VNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQ 729

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G
Sbjct: 730 TFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEG 789

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA
Sbjct: 790 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 849

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIKA+E + + YD +VRN+ G ++Q  YG+DG+    +E ++   +      
Sbjct: 850 ETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNRA 909

Query: 798 MKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG 829
            + K    P  +RYL  +  SE V K+L   G
Sbjct: 910 FEKKFKFDPTNERYLR-RIFSEDVLKELMGSG 940



 Score =  176 bits (446), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 135/416 (32%), Positives = 202/416 (48%), Gaps = 63/416 (15%)

Query: 886  LEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRI 945
             E  I    +R++  +V  G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T GVPR+
Sbjct: 1059 FEWLIGEIETRFQQAQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRL 1118

Query: 946  KEIINGAKRISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
            KEIIN +K+   P +T  L      D E A  V+  R+E T L +V  +  I       +
Sbjct: 1119 KEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL-CRLEHTTLRKVTANTAIYYDPDPQN 1177

Query: 1003 IVIA----------------------------LDMETIQDAHL----------------- 1017
             VIA                            LD + + D  L                 
Sbjct: 1178 TVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDL 1237

Query: 1018 -CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NVLPMVI 1075
             CI  D   E +V   +I +     K  D  +      VDK +    L  ++ N+L  + 
Sbjct: 1238 NCIFNDDNAEKLVLRIRI-MNSDDNKFQDEEET-----VDKMEDDMFLRCIEANMLSDMT 1291

Query: 1076 VKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKT 1129
            ++GI+ + +V +   + + +K   V + GE K   ++ L  +GT +  V+    +D  +T
Sbjct: 1292 LQGIEAIGKVYMHLPQTDSKKRIIVTDTGEFKAIAEWLLETDGTSMMKVLSERDVDTNRT 1351

Query: 1130 KSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRF 1189
             SN I E+   LGIEA R  +  E+N  ++ +G+ ++ RH+ LL D+MT +G ++ ITR 
Sbjct: 1352 FSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1411

Query: 1190 GIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    LGTG   +
Sbjct: 1412 GINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDL 1467


>gi|391332786|ref|XP_003740810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
           [Metaseiulus occidentalis]
          Length = 1851

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/703 (40%), Positives = 424/703 (60%), Gaps = 28/703 (3%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L    V  +FK +++ +C  L + ER   P  +++T +AVPP+ +RP+V+M GS  N++
Sbjct: 209 VLTAERVYEIFKHISEEECFCLGMDERYAKPSWMVLTVLAVPPLCVRPAVVMFGSARNQD 268

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L +      +        + LQ  VA   ++++ G+P +MQ + R
Sbjct: 269 DLTHKLSDIVKANNELIRNEQSGAAPHILAENVKMLQFHVATLYDNELPGLPRAMQKSGR 328

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLK K+GR RGNL GKRV+++ RTVI+PDPNLKI EV +P  +A+ LT+PE V
Sbjct: 329 PLKSIKQRLKAKEGRIRGNLMGKRVDFSARTVITPDPNLKINEVGVPRSIAQNLTFPEIV 388

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NIE++++ +  G ++YPGA+ I   +G    L  +F  + + + L+ G  V+RH+++
Sbjct: 389 TPFNIERMQELVSRGNNQYPGAKYIVRENGERIDL--RFHPKASDLHLQCGYRVERHVQN 446

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+++FNRQP+LH+MS+M H+ R++PW T R N SV  PYNADFDGDEMNMHVPQ+ E R
Sbjct: 447 GDIIVFNRQPTLHKMSMMGHKIRVLPWSTFRMNLSVTTPYNADFDGDEMNMHVPQSLETR 506

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP+  + ++   QD LT+   +T++D + ++     +  ++     
Sbjct: 507 AEIEQLAMVPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVYLEKDQMMNLLMFLPIWNG 566

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR- 498
           +V  P PAILKP  LWT KQLFS++I  + N+          +T+S     T  DEE   
Sbjct: 567 KV--PIPAILKPKPLWTAKQLFSLIIPGNVNLI---------RTHS-----THPDEEDDG 610

Query: 499 -IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
             + + P D  V   + +L+SG + K T+G  +   L  VL  + G        + L  +
Sbjct: 611 PYKWISPGDTKVIIEHGQLLSGIVCKKTVG-ASAGSLMHVLFVEMGHEVAGAFYSHLQTV 669

Query: 558 SARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
              W+   G SIGI D +  ++   D +  +     +V  V  K +N+ +L+  PG    
Sbjct: 670 VNAWLLYEGHSIGIGDTIADQQTYMDIQNTIKKAKQDVIEVIEKAHND-ELEPTPGNTLR 728

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           QT E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++ACVGQQ+V 
Sbjct: 729 QTFENQVNRILNDARDKTGGSAQKSLSEFNNFKSMVVSGAKGSKINISQVIACVGQQNVE 788

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ +EFFFH MGGREGL+DTAVKT
Sbjct: 789 GKRIPFGFRKRTLPHFIKDDFGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 848

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           A+TGY+ RRLIKA+E + I YD +VRN+ G ++QF YG+DG+D
Sbjct: 849 AETGYIQRRLIKAMESVMICYDGTVRNSNGQVIQFRYGEDGLD 891



 Score =  116 bits (290), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 104/183 (56%), Gaps = 6/183 (3%)

Query: 1069 NVLPMVIVKGIKTVERVVI---AEKEKEKRKVKENGEKK---KYRLLVEGTGLQAVMGAE 1122
            N+L  + ++GI+ + +V +      +K++  V E GE K   ++ L  +GT L  V+   
Sbjct: 1286 NMLSDMTLQGIEAISKVYMHLPTTDDKKRIVVTETGEFKAISEWLLETDGTSLMRVLSER 1345

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
             +D  +T SN I EV   LGIEA R  +  E+N  +   G  ++ RH+ LL D+MT +G 
Sbjct: 1346 DVDPVRTYSNDIIEVFSVLGIEAVRKAVEKEMNHVISFDGSYVNYRHLALLCDVMTAKGH 1405

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            ++ ITR GI + D   LM  SFE+T D L +A+ +   D+++GVSE II+G    +GTG 
Sbjct: 1406 LMAITRHGINRQDTGALMRCSFEETVDILMDAAFHAEADKLKGVSENIILGKLARMGTGA 1465

Query: 1243 LKI 1245
              +
Sbjct: 1466 FDL 1468



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 74/120 (61%), Gaps = 2/120 (1%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+   + + G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN +K+
Sbjct: 1068 ARFHQSQGQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKQ 1127

Query: 955  ISTPIITAELECNDNENA--ARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L+     +A  A+ V  R+E T L +V  +  I       + VIA D + +
Sbjct: 1128 PKTPSLTVFLKGASARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQDFV 1187


>gi|426383941|ref|XP_004058535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
           [Gorilla gorilla gorilla]
          Length = 1883

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  174 bits (441), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/401 (30%), Positives = 197/401 (49%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L      +A R   +  R+E T L +V  +  I       S V+A D E +
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIK------------------------------ 1042
               +   + D+ + S     +++L ++H+                               
Sbjct: 1194 NVYYEMPDFDVARISPWLL-RVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNA 1252

Query: 1043 ---VLDFRKL--------EIFPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEK 1090
               VL  R +        E    VDK      L  ++ N+L  + ++GI+ + +V +   
Sbjct: 1253 EKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLP 1312

Query: 1091 EKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
            + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I E+   LGIE
Sbjct: 1313 QTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIE 1372

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            A R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D   LM  SF
Sbjct: 1373 AVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSF 1432

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1433 EETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|397477903|ref|XP_003846225.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
           subunit RPB1 [Pan paniscus]
          Length = 1719

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  174 bits (441), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/401 (30%), Positives = 197/401 (49%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L      +A R   +  R+E T L +V  +  I       S V+A D E +
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIK------------------------------ 1042
               +   + D+ + S     +++L ++H+                               
Sbjct: 1194 NVYYEMPDFDVARISPWLL-RVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNA 1252

Query: 1043 ---VLDFRKL--------EIFPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEK 1090
               VL  R +        E    VDK      L  ++ N+L  + ++GI+ + +V +   
Sbjct: 1253 EKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLP 1312

Query: 1091 EKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
            + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I E+   LGIE
Sbjct: 1313 QTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIE 1372

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            A R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D   LM  SF
Sbjct: 1373 AVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSF 1432

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1433 EETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|348523738|ref|XP_003449380.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
           [Oreochromis niloticus]
          Length = 1966

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 293/710 (41%), Positives = 426/710 (60%), Gaps = 32/710 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +  +L +     RPE +I+T + VPP+A+RP+V+M GS  N++
Sbjct: 213 LLSPERVHEIFKRISDEEDIILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQD 272

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 273 DLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 332

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A  +T+PE V
Sbjct: 333 PLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIV 392

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ D
Sbjct: 393 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQIGYKVERHMCD 450

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 451 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 510

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDG 437
            E   L  V   + TP++   ++   QD LT+    T++D F +R      LM     DG
Sbjct: 511 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 570

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
                +P PAILKP  LWTGKQ+FS++I  H N+          +T+S     T  D+E 
Sbjct: 571 ----KMPQPAILKPRPLWTGKQIFSLIIPGHINVI---------RTHS-----THPDDED 612

Query: 498 R--IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
               + + P D  V   N ELI G L K +LG  +   L  +   + G   T    + + 
Sbjct: 613 SGPYKHISPGDTKVIVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQ 671

Query: 556 KLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
            +   W+   G SIGI D +   K   D +  +     +V  V  K +N  +L+  PG  
Sbjct: 672 TVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNT 730

Query: 615 AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
             QT E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++A VGQQ+
Sbjct: 731 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQN 790

Query: 675 VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
           V G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAV
Sbjct: 791 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 850

Query: 735 KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           KTA+TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+   N+E
Sbjct: 851 KTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE 900



 Score =  174 bits (441), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/403 (31%), Positives = 200/403 (49%), Gaps = 55/403 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +KR
Sbjct: 1072 TKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKR 1131

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L      +A R   +  R+E T L +V  +  I       + V+A D E +
Sbjct: 1132 PKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWV 1191

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQH-------------------------------- 1040
               +   + D+ + S     +I+L ++H                                
Sbjct: 1192 NVYYEMPDFDVTRISPWLL-RIELDRKHMTDRKLTMEQIAEKINAGFGEDLNCIFNDDNA 1250

Query: 1041 ------IKVLD-----FRKLEIFPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIA 1088
                  I++++     F++ E    VDK      L  ++ N+L  + ++GI+ + +V + 
Sbjct: 1251 EKLVLRIRIMNSDENKFQEDEEV--VDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMH 1308

Query: 1089 EKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLG 1142
              + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I E+   LG
Sbjct: 1309 LPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLG 1368

Query: 1143 IEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLA 1202
            IEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR GI + D   LM  
Sbjct: 1369 IEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKC 1428

Query: 1203 SFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            SFE+T D L  AS +G  D ++GVSE I++G   P GTG   +
Sbjct: 1429 SFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAGTGCFDL 1471


>gi|66359288|ref|XP_626822.1| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A''
           subunit, long PHYSPTS repeat at
 gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,possible RNA polymerase
           A/beta'/A'' subunit, long PHYSPTS repeat at C-terminus
           [Cryptosporidium parvum Iowa II]
          Length = 1902

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 291/707 (41%), Positives = 421/707 (59%), Gaps = 26/707 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL +FKR++  D ++L        P   I T I +PP A+RP V   GS  +E+D+T +L
Sbjct: 209 VLTIFKRISHDDMKILGFDPVKCNPSWFINTVIPIPPPAVRPYVQF-GSDRSEDDLTLKL 267

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARPLSGFV 206
           ++II+ N +L++++   +           LQ  +   IN+D+ G+P S  +  RP+    
Sbjct: 268 QQIIKLNENLKKQIRIGSPEHIISEMSTVLQYHLITLINNDLPGLPQSRTRSNRPIKSLR 327

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK GR RGNL GKRV+++ RTVI+ DPNL + +V +P  +A  LTYPE V+ +NIE
Sbjct: 328 ARLKGKDGRIRGNLMGKRVDFSARTVITGDPNLAVDQVGVPYSIAMTLTYPEVVTPYNIE 387

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDVVLF 325
           +L++ +Q GP ++PGA  I   DGT   L +    N     L+ G  V+RH+++ D+VLF
Sbjct: 388 ELKELVQRGPHEWPGATSIIQEDGTKVDLRFSNTSNNSNNILQYGWKVERHMKNDDLVLF 447

Query: 326 NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
           NRQPSLH+MSIM HR +I+P+ T R N SV +PYNADFDGDEMN+H+ Q+ E R+E   L
Sbjct: 448 NRQPSLHKMSIMGHRVKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSHETRSEIKNL 507

Query: 386 MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDL 443
           M V   + +P+  + ++   QD L   FL+TRK TF  R  F   L+C    +G    ++
Sbjct: 508 MMVPRQIVSPQGNKPVIGIVQDSLLGIFLLTRKSTFLTRDKFLQLLLCIPYWNG----NI 563

Query: 444 PTPAILKPVELWTGKQLFSVLIRPHANM--RVYVNL-------TVKEKTYSNKLIRTEGD 494
           P PAIL+P  LWTGKQ+ +VL+    ++   + +NL       ++K+   S+   + +  
Sbjct: 564 PPPAILRPQPLWTGKQIITVLLAFTTDLGEPIELNLMRDGSIVSIKQSNNSSNTDKDDSK 623

Query: 495 EEIRIETMCPN-DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
           E I         D  V  +  E I G L K   G+ +   L  +L  + G   T   +  
Sbjct: 624 EAIVNNPWISELDNQVIIQKGEHICGVLTKKIAGSSS-GSLIHILWNEIGPEKTGLFLTY 682

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPG 612
              +   W+  HGF++G  D+QP+    +K    L     +V  + I+   +GKL  +PG
Sbjct: 683 TQMVVNTWLLEHGFTVGCQDIQPQNYTLEKIMNSLEGSKLQVQQI-IRRAQKGKLDCQPG 741

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSL-PWRNSPLIMSQCGSKGSPINISQMVACVG 671
               ++ EA +   LN  RE +G     +L   +N+ + M QCGSKGS INISQ++ACVG
Sbjct: 742 KSLIESFEAQVNQELNSARELSGTIATENLDSSKNNIVAMVQCGSKGSTINISQIMACVG 801

Query: 672 QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
           QQ+V G+R P GF DRSLPHF +    P ++GFV+NS+ SGL+  E FFH MGGREG++D
Sbjct: 802 QQNVEGKRIPFGFRDRSLPHFLKYDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIID 861

Query: 732 TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
           TA KT++TGY+ RRLIKA+ED  +QYD +VRN+ G I+QFLYG+DGM
Sbjct: 862 TACKTSETGYIQRRLIKAMEDCMVQYDRTVRNSNGDIIQFLYGEDGM 908



 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/408 (30%), Positives = 195/408 (47%), Gaps = 70/408 (17%)

Query: 903  EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITA 962
             +G  +G I AQSIGEP TQMTL TFHFAGV S N+T GVPR++E+IN AK + TP +T 
Sbjct: 1114 HSGEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNVRTPTLTV 1173

Query: 963  ELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAH-LC 1018
             LE    ND E A  V+   +E T+L  +     I+        ++  D   + D +   
Sbjct: 1174 YLESGIANDQEQAKDVLT-LLEHTMLQNITTIAHILYDPEQDKTIVEADKSWVSDYYEFP 1232

Query: 1019 INADI------------VKESIVQTPKIKLKQQHIKVL-DFRKLEI-------------- 1051
             +ADI            +   +V   K+ +K+   K+L +F K E+              
Sbjct: 1233 DDADITSRLGTWLLRIQLNNKLVTDKKLSMKEIGDKILMEFSKDELDCIWTDDNSDELVL 1292

Query: 1052 ------FPPVD--KSKIH--------------------FELYSLKNVLPMVIVKGIKTVE 1083
                    P +  +  IH                    F    +   L  + ++GI  ++
Sbjct: 1293 RLRIKNIEPTNNIRDNIHSSEENDSISPSITSGVEEHKFLEKLMTECLSQITLRGINNIK 1352

Query: 1084 RVVIAEKEKEK------RKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEV 1137
            +V + E++  +      + V++N    ++ L  +G  L+AV+    ID  +T SN I EV
Sbjct: 1353 KVYMKEEQVSRYDSVSQKMVRDN----QWVLDTDGCNLEAVLCHTAIDSTRTISNDITEV 1408

Query: 1138 QQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKS 1197
               LGIEA R  ++ E+   +   G  ++ RH+ LL D MT +G ++ ITR GI ++DK 
Sbjct: 1409 FSVLGIEAVRRALLRELRTVISFDGSYVNYRHLALLCDNMTQKGHLMSITRHGINRVDKG 1468

Query: 1198 VLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             L   SFE+T + L +A++ G  D + GVSE +++G   P GT    +
Sbjct: 1469 PLQKCSFEETVEVLMDAAMFGETDYLNGVSENVMLGQLAPYGTACFDV 1516


>gi|397135969|gb|AFO11479.1| RNA polymerase I, partial [Trigonopsis variabilis]
          Length = 871

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 293/713 (41%), Positives = 428/713 (60%), Gaps = 43/713 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  VL +FK +++ D + L L+E   RPE +I+T + VPP  +RPS+ ++ +   E+D
Sbjct: 15  LTPQEVLNVFKHISNEDIQKLGLNEDYARPEWMIVTVLPVPPPPVRPSIAINDTARGEDD 74

Query: 143 ITERLKRIIQTNASLQ---QELVEAN--SAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ 197
           +T +L  I++ NA++Q   QE   A+  + F++L     LQ  VA Y+++D+ G P ++Q
Sbjct: 75  LTYKLADILKANANVQRCDQEGAPAHVVNEFETL-----LQFHVATYMDNDIAGQPQALQ 129

Query: 198 VA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTY 256
            + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +A+ LTY
Sbjct: 130 KSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLALDEVGVPRSIAKTLTY 189

Query: 257 PERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
           PE V+ +NI KL + ++NGPD++PGA+ +   D   R+     +    + L+ G  V+RH
Sbjct: 190 PEMVTPYNIHKLSELVRNGPDEHPGAKYV-IRDTGERIDLRYHKRAGDIRLQYGWKVERH 248

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           + DGD VLFNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+E
Sbjct: 249 IVDGDAVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 308

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYM 434
           E RTE   +  V   + +P++   ++   QD L     +T +D F  Y      +M    
Sbjct: 309 ETRTELSQICMVPLQIISPQSNRPVMGIVQDTLCGVRKMTVRDNFIGYQETMNIMMWVPD 368

Query: 435 GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
            DG+    +P PA+LKP  LWTGKQ+ S++I    N++ +                   D
Sbjct: 369 WDGI----IPPPAVLKPKPLWTGKQILSMVIPKGINLQRF-------------------D 405

Query: 495 EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
           E   +  M P D  +   N E++ G + K T+G     GL  +++R+ G +        +
Sbjct: 406 EGTTL--MNPKDNGMLIENGEIMFGVVDKKTVG-ATAGGLVHIIMREKGPYICRDFFGGV 462

Query: 555 AKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
             +   W+ ++GFSIGI D     +      K I E  +     I E     L  +PG  
Sbjct: 463 QTVVNYWLLHNGFSIGIGDTIADADTMRHITKTIDEAKQQVQNLINEAQHNVLAPEPGMT 522

Query: 615 AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
             ++ E  ++  LN+ R+ AG++   SL   N+   M   GSKGS INISQM ACVGQQ 
Sbjct: 523 LRESFEHKVSRALNQARDTAGRSAEMSLKNDNNVKQMVIAGSKGSFINISQMSACVGQQI 582

Query: 675 VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
           V G+R P GF DR+LPHF +    P +KGF+ NS+  GL+  EFFFH M GREGL+DTAV
Sbjct: 583 VEGKRIPFGFKDRTLPHFTKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAV 642

Query: 735 KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           KTA+TGY+ RRL+KALED+S++YD++VRN+ G I+QF+YG+DG+D   +E ++
Sbjct: 643 KTAETGYIQRRLVKALEDVSVEYDSTVRNSLGDIIQFIYGEDGIDGTAVEKQT 695


>gi|324500036|gb|ADY40031.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
          Length = 1840

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/708 (39%), Positives = 419/708 (59%), Gaps = 22/708 (3%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+   VL +FKR+ D DC VL +  R   P+ +II  + VPP+A+RP+V   GS  N++
Sbjct: 228 VLSAERVLEIFKRIADEDCIVLGMDPRFARPDWMIIQELPVPPLAVRPAVATFGSARNQD 287

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I+  N  L++      +A       + LQ  VA +I++ V G+P + Q   R
Sbjct: 288 DLTHKLSDIVNANNQLKRNERNGAAAHVIADDLKLLQYHVATFIDNSVPGLPTATQKGGR 347

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I  V +P  +A+ +T+PE V
Sbjct: 348 PLKSLKQRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLPIDTVGVPRTIAQNMTFPEIV 407

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           +  NI++L++ +  G  +YPGA+ +   +G    L    R    V ++ G  V+RH+ DG
Sbjct: 408 TPFNIDELQELVNRGDAQYPGAKYVIRSNGERVDLRYHPRASDLV-IQPGYKVERHMRDG 466

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D+++FNRQP+LH+MS+M H+ +I+PW T R N SV  PYNADFDGDEMN+H+PQ+ E + 
Sbjct: 467 DIIVFNRQPTLHKMSMMGHKVKILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETKA 526

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           E   +  V   L TP+  + ++   QD LT+ +++T++DTF + A    +  +M D   +
Sbjct: 527 EIAEIAMVPRQLITPQANKPVMGIVQDALTAVYMLTKRDTFIEAARLMDLLMHMPDWNAK 586

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           +  P PAILKP  LWTGKQLFS++I    N+ +            N     + +     +
Sbjct: 587 I--PQPAILKPKRLWTGKQLFSLIIPGEVNVEL------------NHSTHPDDENAGEYK 632

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
            + P D  V      L+SG +   T+G      L+ V L + G    +   +++   +  
Sbjct: 633 WISPGDTKVLVERGVLLSGIICSRTVGRSAGSLLHVVTL-ELGFDVAAQFYSQIQTTANA 691

Query: 561 WIGNHGFSIGIDD-VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
           W+   G +IGI D +  +   S  +  +     +V  V I+   +  +++  G    QT 
Sbjct: 692 WLLAEGQTIGIADAIADRATYSHIQETIKKAKMDVVEV-IERARKDSIKVTRGNTLLQTF 750

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E+ I +ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R
Sbjct: 751 ESKINNILNNARDRTGSSAQRSLSADNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKR 810

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GF  R+LPHF R    P AKGFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA+T
Sbjct: 811 IPFGFRHRTLPHFIRDDCGPEAKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 870

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GY+ RRL+KA+E + + YD +VRNA G +VQ  YG+DG+D   +E ++
Sbjct: 871 GYIQRRLMKAMESIMVNYDGTVRNALGEVVQLSYGEDGLDGTWVENQT 918



 Score =  167 bits (422), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/402 (30%), Positives = 194/402 (48%), Gaps = 54/402 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+    V  G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN +K+
Sbjct: 1087 SRFNRAIVYPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKK 1146

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L      +  R   ++ R+E   L +V  S  I+      + V+  D E +
Sbjct: 1147 PKTPSLTIFLAPGLGSDVRRANDLQCRMEHCTLRKVTSSTMIIYDPDPMNTVVEEDREWL 1206

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFR------------------------- 1047
                   N   +  S      ++++  H +++D +                         
Sbjct: 1207 NVFFELFN---LNPSGTSPWLLRIELDHKRMVDQKLSLEMIAEKIRDGFGDDLMVTHTDD 1263

Query: 1048 -------KLEIFPPVDKSKIHFELYSLKN-----------VLPMVIVKGIKTVERVVIAE 1089
                   +L +    DK        S++N           +L  + ++GI+++ +V +  
Sbjct: 1264 NAEKLILRLRLSEQHDKKSEDINEASVRNDEAVLRCLGVTMLSNLTLQGIESITKVYVHN 1323

Query: 1090 K-EKEKRKVKENG-----EKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
              E E+++  E       +  ++ L  +GT L  V+    ID  +T +N I EV + LGI
Sbjct: 1324 AVEPERKRAVETPDGGLMQPAEWILETDGTALAKVLSEPDIDATRTTTNDICEVFEVLGI 1383

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            EAAR  I  E+N  +   G  ++ RH+ LL D+MT +G ++ I+R GI + +   LM  S
Sbjct: 1384 EAARKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGYLMAISRHGINRQEMGALMRCS 1443

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            FE+T D L  A+V+   D I+GVSE I++G     GTG   +
Sbjct: 1444 FEETVDILTEAAVHTEQDFIKGVSENIMLGQLARGGTGCFDL 1485


>gi|288931146|ref|YP_003435206.1| DNA-directed RNA polymerase subunit A' [Ferroglobus placidus DSM
           10642]
 gi|288893394|gb|ADC64931.1| DNA-directed RNA polymerase subunit A' [Ferroglobus placidus DSM
           10642]
          Length = 870

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/724 (39%), Positives = 426/724 (58%), Gaps = 34/724 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P +V    +++ D D     +     RPE  ++T + VPP+ +RPS+I++  Q +E+D
Sbjct: 170 LTPKDVRERLEKIPDEDLPAFGIDPKACRPEWFVLTVLPVPPVTVRPSIILETGQRSEDD 229

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N    +              WE LQ  V  Y++++V G+P +  +  RP
Sbjct: 230 LTHKLVDIIRINQRFLENKEAGAPQLILEDLWELLQYHVTTYLDNEVSGIPPARHRSGRP 289

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDPNL I EV +P  +A  LT P  V+
Sbjct: 290 LKTLAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSINEVGVPKVIAEELTVPIYVT 349

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
            +NIE+ R+ +     ++P A  +  PDG    +    R +LA +L+ G IV+R L+DGD
Sbjct: 350 PNNIEEAREYVLR--TEHPKANYVIRPDGRRIRVIDANREELAEKLEPGWIVERQLKDGD 407

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +VLFNRQPSLHRMSIM H  R++P++T R N +VC PYNADFDGDEMN+HVPQ+ EA+ E
Sbjct: 408 IVLFNRQPSLHRMSIMAHYVRVLPYKTFRLNPAVCPPYNADFDGDEMNLHVPQSIEAQAE 467

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
           A +LM VQ ++ +P+ G  ++    D ++  +L+TR +  + +    +M       ++++
Sbjct: 468 AKILMAVQEHILSPRFGGPIIGGIHDHISGLYLLTRGEKLFSKE--EVMELIRPINVEKI 525

Query: 442 DLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET 501
             P     K    WTGKQ+FS+++ P   +     +              +G E+   E 
Sbjct: 526 PEP-----KYDSKWTGKQIFSMIL-PDITLEFKAEI-------------CQGCEKCEGEN 566

Query: 502 MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARW 561
            CP+D +V  RN ELI G + +  +G   K  +   ++R YG       ++ + +L+ R 
Sbjct: 567 -CPHDAYVVIRNGELIKGTIDEKAVG-AFKGIIIDEIVRKYGTEEAKKFIDNMTQLAIRA 624

Query: 562 IGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEA 621
           I   GF++GIDD    KE  ++  ++++E  +     I+ Y  G L+  PG    +TLE 
Sbjct: 625 IMFFGFTVGIDDEDIPKEAREQIEEIMNEAEKKVEELIEAYKAGNLEPMPGRSLEETLEM 684

Query: 622 VITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
            I  +L + R+ AGK     L   N+ +IM+  G++GS +N++QM AC+GQQSV G R  
Sbjct: 685 KIMQVLGKARDQAGKIASQYLGMDNAAVIMAVSGARGSMLNLTQMAACIGQQSVRGERIR 744

Query: 682 NGFI--DRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            G+   +R+LPHF        A+GFV +S+ SGLS  EFFFH +GGREGLVDTAV+T+ +
Sbjct: 745 RGYAYSNRTLPHFKPGDLGARARGFVRSSYKSGLSPVEFFFHAVGGREGLVDTAVRTSQS 804

Query: 740 GYMSRRLIKALEDLSIQYDNSVR-NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
           GY+ RRLI AL+DL ++YD +VR    G IVQF YG+DG+DP  M+   G+ ++  R++ 
Sbjct: 805 GYLQRRLINALQDLKVEYDGTVREQTSGIIVQFKYGEDGVDP--MKSFRGKGVDVKRIIK 862

Query: 799 KVKA 802
           +V A
Sbjct: 863 EVLA 866


>gi|242071129|ref|XP_002450841.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
 gi|241936684|gb|EES09829.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
          Length = 1874

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 299/723 (41%), Positives = 425/723 (58%), Gaps = 34/723 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           IL+   VL + K ++D +  +L L     RP+ +I+  + +PP  +RPSV+M  S  +E+
Sbjct: 211 ILSAERVLNVLKNISDKESLLLGLHPKLARPDWMILQVLPIPPPPVRPSVMMGTSSKSED 270

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VAR 200
           D+T +L  II+ N +L+++      A       + LQ  +A Y ++++ G P + Q   R
Sbjct: 271 DLTHQLAMIIRHNENLRRQERNGAPAHIIEEFSQLLQFHIATYFDNELPGQPRATQRSGR 330

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           P+     RLK K+GR RGNL GKRV+++ RTVI+PDPN+ I EV +P  +A  LTYPE V
Sbjct: 331 PIKSICSRLKAKEGRVRGNLMGKRVDFSARTVITPDPNINIDEVGVPWSIALNLTYPETV 390

Query: 261 SDHNIEKLRQCIQNGPDKYPG---ARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRH 316
           + +NIE+L++ + NGP   PG   A+ I   DG    L Y K  +   +EL  G  V+RH
Sbjct: 391 TPYNIERLKELVLNGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLEL--GYKVERH 448

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           L DGD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ 
Sbjct: 449 LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 508

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           E R E L LM V   + +P++ + ++   QD L     IT++DT  ++  F  +  +  D
Sbjct: 509 ETRAEVLELMMVPKCIVSPQSNKPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWED 568

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
              ++  P PAILKP  +WTGKQ+F+++I    N+  + +                 DEE
Sbjct: 569 FDGKI--PAPAILKPRPIWTGKQVFNLIIPRQINLIRFCSW--------------HSDEE 612

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
               T  P+D  V     EL+SG L K TLG G+   L  ++  + G  A    +     
Sbjct: 613 KGFVT--PSDTVVRIEKGELLSGTLCKKTLGTGSG-SLIHIIWEEVGPDAARKFLGYTQW 669

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           L   W+  +GFSIGI D+           K IS   +     IK+  + +L+ +PG    
Sbjct: 670 LVNYWLLQNGFSIGIGDMIADAATMADINKAISGAKDCVKKLIKQARDEQLKAEPGHTMM 729

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           ++ E  + + LN+ R++ G     +L   N+   M   GSKGS INISQM ACVGQQ++ 
Sbjct: 730 ESFENKVNEALNKARDNVGSNVQNNLSESNNLKAMVSAGSKGSFINISQMAACVGQQNIE 789

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF DR+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKT
Sbjct: 790 GKRIPFGFSDRTLPHFTKDDYGPESRGFVENSYLQGLTPQEFFFHAMGGREGLIDTAVKT 849

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           ++TGY+ RRL+KA+ED+ ++YD +VRN+ G +VQF+YG+DGMD   +E +     N D L
Sbjct: 850 SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVVQFIYGEDGMDAVWIEEQ-----NLDSL 904

Query: 797 LMK 799
            MK
Sbjct: 905 KMK 907



 Score =  201 bits (511), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 130/404 (32%), Positives = 203/404 (50%), Gaps = 43/404 (10%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T +  E  I     R+    V     IG + AQSIGEP TQMTL TFHFAGV++ N+T 
Sbjct: 1056 LTREAFEWIIDEIVWRFSQSLVAPSEMIGCVAAQSIGEPATQMTLNTFHFAGVSAKNVTL 1115

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR++EIIN AK+I TP ++  L  E N  +  A+ V+  +E T L  V  + ++    
Sbjct: 1116 GVPRLREIINVAKKIKTPSLSVYLKPEVNKTKELAKSVQCALEYTTLRSVTHATEVWYDP 1175

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESI------VQTPKIKLKQQHIKVLDF-----R 1047
                 +I  D+E +   +   + DI  + I      ++  +  +  + + + D      R
Sbjct: 1176 DPMGTIIEEDLEFVLSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIANEINR 1235

Query: 1048 KLE-----IFPPVDKSKIHFELYSLK------------------------NVLPMVIVKG 1078
            + +     IF   +  K+   L  +                         N+L  + ++G
Sbjct: 1236 EFDGDLSCIFSDDNADKLILRLRIINDEASRGEILDDSAGDEVFLKKIESNMLAEMSLRG 1295

Query: 1079 IKTVERVVIAEKEKEKRKVKEN-GEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEV 1137
            I  + +V I E +  K  V +   E K++ L  +G  L AVM  E +D  +T SNH+ EV
Sbjct: 1296 IPDINKVFIKEVKVNKFDVSDGFKEHKEWMLDTDGVNLLAVMCHEDVDATRTTSNHLTEV 1355

Query: 1138 QQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKS 1197
             + LGIEA R  ++DE+   +   G  ++ RH+ +L D MT+RG ++ ITR GI + D  
Sbjct: 1356 IEVLGIEAVRRALLDELRSVISFDGSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTG 1415

Query: 1198 VLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             LM  SFE+T D L +A+V+   D + GV+E I++G   P+GTG
Sbjct: 1416 PLMRCSFEETVDILLDAAVHAESDYLRGVTENIMLGQLAPIGTG 1459


>gi|367052355|ref|XP_003656556.1| hypothetical protein THITE_2121340 [Thielavia terrestris NRRL 8126]
 gi|347003821|gb|AEO70220.1| hypothetical protein THITE_2121340 [Thielavia terrestris NRRL 8126]
          Length = 1751

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 297/734 (40%), Positives = 430/734 (58%), Gaps = 31/734 (4%)

Query: 72  TKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIR 128
           TK+ + A N    I+ P   L +F+RM+D +   + L+    RPE +IIT + VPP  +R
Sbjct: 194 TKDEEGAKNKEKKIITPEMALNIFRRMSDQEMVDIGLNISQARPEWMIITVLPVPPPPVR 253

Query: 129 PSVIMDGSQS---NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYI 185
           PS+ MDG+ +   NE+D+T +L  II+ N +++Q + E +           LQ  VA Y+
Sbjct: 254 PSISMDGTGTGLRNEDDLTYKLGDIIRANGNVRQAIAEGSPQHIITDFENLLQYHVATYM 313

Query: 186 NSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEV 244
           ++D+ G P ++Q   RP+     RLKGK+GR RGNL GKRV+++ RTVI+ D N+ + EV
Sbjct: 314 DNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANISLDEV 373

Query: 245 AIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA 304
            +P  +AR LTYPE V+ +NI KL Q +QNGP+++PGAR I   DGT R+     R    
Sbjct: 374 GVPRSIARTLTYPETVTPYNIAKLTQFVQNGPNEHPGARFIIRSDGT-RIDLRHHRRATG 432

Query: 305 VELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFD 364
           ++L+ G  V+RHL DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFD
Sbjct: 433 IQLEYGWKVERHLIDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFD 492

Query: 365 GDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDR 424
           GDEMN+HVPQTEE R E   L  V  N+ +P+    L+   QD L   + + R+D F  +
Sbjct: 493 GDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQDTLAGVYKLCRRDVFLTK 552

Query: 425 AAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTY 484
                +  ++ D  D + +P PAI KP   WTGKQ+ S++I    N  +++N    +K +
Sbjct: 553 EQVMNIMLWVPD-WDGI-IPLPAIFKPRPRWTGKQIISMIIPKIIN--IHMNSDQPDKDH 608

Query: 485 SNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA 544
             K                 +DG +  +  EL+ G L K ++G     G+  +   + G 
Sbjct: 609 PFK-----------------DDGLL-IQQGELMFGLLSKKSVG-ATGGGIVHLCYNELGP 649

Query: 545 HATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNE 604
                 +N   ++   W+ ++G SIGI D  P  +  +   K I +  E      ++   
Sbjct: 650 QGAMDFLNGCQRVVNYWLLHNGHSIGIGDTIPDAKTIELVQKHIDDEKEEVRRLTQQATN 709

Query: 605 GKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINIS 664
            +L+  PG +  +T E  ++  LN+ R+ AG     SL   N+ + M++ GSKGS INIS
Sbjct: 710 NELEPLPGMNIRETFENKVSTALNKARDKAGTTTEKSLKDLNNAVTMARSGSKGSAINIS 769

Query: 665 QMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMG 724
           QM A VGQQ V G+R P GF  R+LPHF +    P A+GFV NS+  GL+ +EFFFH M 
Sbjct: 770 QMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMA 829

Query: 725 GREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           GREGL+DTAVKTA+TGY+ RRL+KALED    YD +VRN+ G I+QF+YG+DG+D   +E
Sbjct: 830 GREGLIDTAVKTAETGYIQRRLVKALEDAEAHYDGTVRNSLGDIIQFIYGEDGLDGVAIE 889

Query: 785 GKSGEPLNFDRLLM 798
            +  + +N    L 
Sbjct: 890 KQRVDHMNLSNKLF 903



 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/403 (29%), Positives = 196/403 (48%), Gaps = 54/403 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1064 NRWSRSMVAPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKD 1123

Query: 955  ISTPIITAELEC-NDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
            I TP +   L+  N  +  A+ ++  +E T L  V    +I     + S  I  D + ++
Sbjct: 1124 IKTPSMVVYLDSENATQEDAKRLRNAVEHTSLRSVTAVTEIYYDPDITSTNIPEDFDMVE 1183

Query: 1014 DAHLCINADIVKESIVQTPK--IKLKQQHIKVLDFRKLEIFPPVDKSKIHFE-----LYS 1066
             ++  I     ++SI    +  ++L     K+LD + L +     + K  +      ++S
Sbjct: 1184 -SYFLIPDSSDQDSIENQSRWILRLTLDRQKMLD-KGLRVEDVAQRIKEEYRKDVAVIFS 1241

Query: 1067 LKNVLPMVI-------------------------------------VKGIKTVERVVIAE 1089
              N   MVI                                     ++G+  +ER  + +
Sbjct: 1242 DNNAEEMVIRIRVIRQDDDKDEDGNKIIEDDVMLKRLEKHLLDHCTLRGVVGIERAFLNK 1301

Query: 1090 KEKEKRKV-------KENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLG 1142
              K   +        K+  E  ++ L  +GT L+ V+  EG+D  +T +N ++++    G
Sbjct: 1302 GTKLVERADGSQVANKDAPECMEWYLDTQGTALREVLTIEGVDTKRTSTNDLYQIVDVFG 1361

Query: 1143 IEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLA 1202
            IEAAR  ++ E+ + +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   LM  
Sbjct: 1362 IEAARAALLQELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMRC 1421

Query: 1203 SFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            SFE+T + L  A+  G  D   G+SE +++G   P+GTG   +
Sbjct: 1422 SFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFDV 1464


>gi|120561207|gb|ABM26989.1| RNA polymerase II largest subunit, partial [Hydnum repandum]
          Length = 1010

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 300/765 (39%), Positives = 447/765 (58%), Gaps = 51/765 (6%)

Query: 29  AVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKAAVNVATYILNP 88
           A+K   CG++  +++K    L +++ + K  +  Q+  + +   ++  A+          
Sbjct: 86  ALKKTGCGHVQPLIRKEALKLFLVYKKIK-DDDEQDIRTQLPDKRQFTAS---------- 134

Query: 89  VNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDIT 144
            +V    K++++   E++ LS    RPE +I+T + VPP  +RPS+ +DG +  +E+D+T
Sbjct: 135 -DVYNTLKKISEEHLELMGLSVEYARPEWMILTVLPVPPPPVRPSISVDGGTMRSEDDLT 193

Query: 145 ERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLS 203
            +L  +++ +AS+++   E           + LQ  VA Y+++D+ G+P +MQ + RP+ 
Sbjct: 194 FKLGDVLKASASVRKCEQEGAPPHVITEYEQLLQFHVATYMDNDISGIPQAMQKSGRPVK 253

Query: 204 GFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDH 263
               RLKGK+GR RGNL GKRV+++ RTVI+ DPN+ + EV +P  +A  LTYPERV+ +
Sbjct: 254 AIRSRLKGKEGRLRGNLMGKRVDFSSRTVITGDPNIMLDEVGVPKSIAMTLTYPERVTPY 313

Query: 264 NIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVV 323
           NI +L++ ++NGP +YPGAR +    G    L  ++  +    L+ G IV+RHL DGD V
Sbjct: 314 NIAQLQELVRNGPREYPGARYVVRDTGERIDL--RYNKRADAFLQYGWIVERHLRDGDYV 371

Query: 324 LFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAL 383
           LFNRQPSLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMNMHVPQ+EE R E  
Sbjct: 372 LFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELS 431

Query: 384 LLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDL 443
            +  V   + +P+  + ++   QD L      T +DTF D +A   +  ++ D    V  
Sbjct: 432 QIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWSAVQNILMWVPDWDGNV-- 489

Query: 444 PTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMC 503
           P PA+L P  LWTGKQ+ S+ I       V +N+    +  S   +  +G          
Sbjct: 490 PIPAVLAPKPLWTGKQILSMTIP------VGINIVRAPEVSSPNPVEDDG---------- 533

Query: 504 PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIG 563
                +   N E+I G + K T+G   + GL  V+ R+ G  A  G  + L  +   W+ 
Sbjct: 534 -----MLIENGEIIYGIVDKKTVGAA-QGGLVHVVFREKGPEACRGLFSGLQMVVNYWLF 587

Query: 564 NHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNE----GKLQLKPGCDAAQTL 619
           ++GFSIGI D    ++  D     I+    +   K+ +Y E     +++ KPG    ++ 
Sbjct: 588 HNGFSIGIGDTIADEKTMDH----ITNRIAMAKAKVYKYIEQGQRDEIKAKPGMTIRESF 643

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E+ +   LN  R+D G+    SL   N+   M   GSKGS INISQM ACVGQQSV G+R
Sbjct: 644 ESEVNAELNICRDDTGRHAEKSLKNDNNVKQMVVAGSKGSFINISQMSACVGQQSVEGKR 703

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GF  R+LPHF +    P A+GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+T
Sbjct: 704 IPFGFKHRTLPHFAKDDYSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET 763

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           GY+ RRL+KALED+++ YD +VRN+ G I+QF+YG+DGMD A +E
Sbjct: 764 GYIQRRLVKALEDVAVCYDGTVRNSLGDILQFIYGEDGMDGAFIE 808


>gi|397135916|gb|AFO11453.1| RNA polymerase I, partial [Babjeviella inositovora]
          Length = 872

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 296/722 (40%), Positives = 430/722 (59%), Gaps = 38/722 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  +L +FK ++  DC  L  +E   RPE ++IT + VPP  +RPS+  + +   E+
Sbjct: 14  VLTPTEILNVFKHISPEDCHRLGFNEDYARPEWMLITVLPVPPPPVRPSIAFNETARGED 73

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA- 199
           D+T +L  +++TN S+Q+ L    S    ++  ETL Q  VA Y+++D+ G P +MQ + 
Sbjct: 74  DLTYKLAEVLKTNISVQK-LEMDGSPQHVISEIETLLQFHVATYMDNDIAGQPQAMQKSG 132

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +P  +AR LTYPE 
Sbjct: 133 RPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIARTLTYPEI 192

Query: 260 VSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
           V+ +NI +L + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+RHL 
Sbjct: 193 VTPYNIHRLTELVRNGPNEHPGAKYVIRDTGDRIDLRYHKRAGDIA--LQYGWKVERHLM 250

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE 
Sbjct: 251 DDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 310

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
           R E   +  V   + +P++ + ++   QD L     +T +D F +      MC ++ D  
Sbjct: 311 RAELSQICAVPLQIISPQSNKPIMGIVQDTLCGVRKMTLRDNFVEYDQVMNMCFWIPD-W 369

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           D V +P PAILKP  LWTGKQL S+ I    +++                 R +G     
Sbjct: 370 DGV-IPEPAILKPKPLWTGKQLLSLCIPKGIHLQ-----------------RFDGGASWS 411

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  +   + E++ G + K T+G     GL   ++R+ G+   +     + K+ 
Sbjct: 412 ----SPTDSGMLIIDGEVLFGVVDKKTVG-ATAGGLIHTVMREKGSAVCAKLFGNMQKVV 466

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
             W+ ++GFSIGI D         +    ISE  E     I   +   L+ +PG    ++
Sbjct: 467 NFWLLHNGFSIGIGDTIADASTMREITNTISEAKEKVQEIILLAHLNTLEPEPGMTLRES 526

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            E  ++ +LN+ R+ AG++   +L   N+   M  CGSKGS INISQM ACVGQQ V GR
Sbjct: 527 FENNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVCGSKGSFINISQMSACVGQQIVEGR 586

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R P GF DR+LPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DTAVKTA+
Sbjct: 587 RIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 646

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS-----GEPLNF 793
           TGY+ RRL+KALED+ + YD++ RN+ G ++QF+YG+DG+D   +E ++     G  + F
Sbjct: 647 TGYIQRRLVKALEDIMVHYDSTARNSLGDVIQFVYGEDGIDGTQVEKQTIDTIPGSDVVF 706

Query: 794 DR 795
           DR
Sbjct: 707 DR 708


>gi|429191196|ref|YP_007176874.1| DNA-directed RNA polymerase subunit A'' [Natronobacterium gregoryi
           SP2]
 gi|448326613|ref|ZP_21515962.1| DNA-directed RNA polymerase subunit A' [Natronobacterium gregoryi
           SP2]
 gi|429135414|gb|AFZ72425.1| DNA-directed RNA polymerase subunit A'' [Natronobacterium gregoryi
           SP2]
 gi|445610905|gb|ELY64670.1| DNA-directed RNA polymerase subunit A' [Natronobacterium gregoryi
           SP2]
          Length = 974

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 291/770 (37%), Positives = 426/770 (55%), Gaps = 54/770 (7%)

Query: 83  TYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSN 139
           T  L P ++   F+ + D D EVL +     RPE +I+T + VPP+  RPS+ +D  Q +
Sbjct: 241 TNKLMPSDIRDWFEAIPDEDIEVLGIDPDRSRPEWMILTVLPVPPVTARPSITLDNGQRS 300

Query: 140 ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQV 198
           E+D+T +L  II+ N    +              WE LQ  V  ++++++ G P +  + 
Sbjct: 301 EDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRS 360

Query: 199 ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RPL    QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+A+ +T   
Sbjct: 361 GRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVAKEMTQTM 420

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            V++ N+EK R+ + NGP+ +PGA  +R PDG    +  K   QLA ++K+G  V+RHL 
Sbjct: 421 NVTERNLEKARRFVSNGPEGHPGANYVRRPDGRRLKVTEKNCEQLAEKVKAGWEVNRHLI 480

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD+V+FNRQPSLHRMSIM H   +MP++T R N  VC PYNADFDGDEMNMH  Q EEA
Sbjct: 481 DGDIVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEA 540

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD-TFYDRAAFSLMCCYMGDG 437
           R EA +LM VQ  + +P+ GE ++ + QD ++  FL+T  +  F +  A  L+       
Sbjct: 541 RAEARVLMRVQEQILSPRFGENIIGAIQDHISGMFLLTHNNPQFNETQALDLLRAT---- 596

Query: 438 MDRVD-LPTPAIL----KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
             R+D LP P+ +    KP   WTG  +FS L+    N+      TV EK          
Sbjct: 597 --RIDELPEPSGVDDEGKP--FWTGHDVFSELLPDDLNLE--FTGTVGEK---------- 640

Query: 493 GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
                           V   + +LI G + +  +G    + +   + + YG       +N
Sbjct: 641 ----------------VVIEDGQLIEGTIAEDEVGEFGGE-IVDTITKIYGKTRARIFIN 683

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
            ++ L+ R I + GFSIGIDD    +E   +  + I + Y+     I+ Y  G+L+  PG
Sbjct: 684 EVSTLAMRSIMHFGFSIGIDDETIPEEAQARIDETIDDAYDRVEELIEAYERGELESLPG 743

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
               +TLE  I   L+R R++AG          N  ++M++ G++GS +N++QM  CVGQ
Sbjct: 744 RTVDETLEMKIMQTLSRARDNAGNIADEHFTDDNPAVVMAESGARGSMLNLTQMAGCVGQ 803

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           Q+V G R   G+ +R+L H+        A GFV NS+ SGL+  EFFFH MGGREGLVDT
Sbjct: 804 QAVRGERINRGYENRTLSHYAENDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLVDT 863

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLN 792
           AV+T+ +GY+ RRLI AL +L  QYD +VR+    IVQF +G+DG  P  +       ++
Sbjct: 864 AVRTSKSGYLQRRLINALSELEAQYDGTVRDTSDTIVQFEFGEDGTSPVKVSSGEDNEID 923

Query: 793 FDRLLMKV---KATCPPAGQRYLS----PQQVSEIVEKQLAAYGKESCSE 835
             ++  +V   +       Q +L     P  +SE  + +L+  G E  S+
Sbjct: 924 VGQIADRVLDSEFDSTEEKQEFLGSKPRPTNLSEHADDRLSVDGPEVTSD 973


>gi|110669643|gb|ABG81916.1| RNA polymerase II largest subunit, partial [Agonimia sp. AFTOL 684]
          Length = 1023

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 296/711 (41%), Positives = 429/711 (60%), Gaps = 36/711 (5%)

Query: 88  PVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGS---QSNEN 141
           P   L +F+ +TD   E L L+    RPE +I+ ++ VPP  +RPS+ +DGS      E+
Sbjct: 135 PAQALQVFQHLTDDTLETLGLNLDFARPEWMILQSLPVPPPPVRPSISVDGSGQGSRGED 194

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAG--WETLQVEVAQYINSDVRGVPFSM-QV 198
           D+T +L  II+ N +L +  V A  A + +A      LQ  VA Y+++D+  +  +  + 
Sbjct: 195 DLTFKLGDIIRANQNLIR--VNAEGAPEHIAKELQALLQYHVATYMDNDIANLDKAQHKS 252

Query: 199 ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +PI +AR LTYPE
Sbjct: 253 GRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIARTLTYPE 312

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            V+ +NI KL + + +GP+++PGAR I  P G  R+     +N   + L++G  V+RH+ 
Sbjct: 313 TVTQYNINKLARLVASGPEQHPGARYIIRPQGE-RIDLRFHKNTSQIILQNGWKVERHIM 371

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGDV+LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMN+HVPQ+EE 
Sbjct: 372 DGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEET 431

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
           R E   L  V  N+ +P+    L+   QD L   + I R+D F  R     +  ++ D  
Sbjct: 432 RAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREEVMNIMLWVPD-W 490

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           D V +P PAI KP   WTGKQ+ S+++ P  N                 L+R +G   + 
Sbjct: 491 DGV-IPQPAIFKPRPRWTGKQMISMVLPPALN-----------------LVRIDGKPNLP 532

Query: 499 I-ETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
             E   P  D  ++  + +L+ G   K ++G G+ +G+   +  ++G     G  N    
Sbjct: 533 AGERFAPAGDSGLFVADGQLLFGLFNKKSVGTGS-NGIIHTIYNEFGHETAMGFFNGAQT 591

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           +   W+ ++GFSIGI D  P     +K K ++  +  EV  +      E  L+  PG + 
Sbjct: 592 VVNYWLLHNGFSIGIGDTVPDVGTVEKIKLEVDKKKAEVERITQSAVAE-DLEALPGMNV 650

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            +T E+ ++  LN  R++AG A   SL   N+ + M++ GSKGS INISQM A VGQQSV
Sbjct: 651 RETFESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSV 710

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R P GF  R+LPHF +     A+KGFV NS+  GL+ TEFFFH M GREGL+DTAVK
Sbjct: 711 EGKRIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 770

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           TA+TGY+ RRL+KALE+++++YD++VR++ G IVQF+YG+DG+D A++E +
Sbjct: 771 TAETGYIQRRLVKALEEVTVKYDSTVRDSRGNIVQFIYGEDGLDGAHIESQ 821


>gi|326672374|ref|XP_003199653.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Danio
           rerio]
          Length = 1921

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 288/702 (41%), Positives = 421/702 (59%), Gaps = 28/702 (3%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR+ D +  +L +     RPE +I+T + VPP+A+RP+V+M GS  N++
Sbjct: 212 LLSPERVHEIFKRIADEEDIILGMDPKYARPEWMIVTVLPVPPLAVRPAVVMQGSARNQD 271

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 272 DLTHKLADIVKINNQLKRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 331

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A  +T+PE V
Sbjct: 332 PLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIV 391

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ D
Sbjct: 392 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQIGYKVERHMCD 449

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+++FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 450 GDIIVFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 509

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 510 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 569

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR- 498
           +V  P PAILKP  LWTGKQ+FS++I  H N           +T+S     T  DEE   
Sbjct: 570 KV--PQPAILKPRPLWTGKQIFSLIIPGHINAI---------RTHS-----THPDEEDSG 613

Query: 499 -IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
             + + P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  +
Sbjct: 614 PYKNISPGDTKVIVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTV 672

Query: 558 SARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
              W+   G SIGI D +  K    D +  +     +V  V  K +N  +L+  PG    
Sbjct: 673 VNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLR 731

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           QT E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++A VGQQ+V 
Sbjct: 732 QTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVE 791

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKT
Sbjct: 792 GKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKT 851

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
           A+TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+
Sbjct: 852 AETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL 893



 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/403 (30%), Positives = 195/403 (48%), Gaps = 57/403 (14%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +KR
Sbjct: 1071 TKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKR 1130

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L      +A R   +  R+E T L +V  +  I       + V+  D E +
Sbjct: 1131 PKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWV 1190

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIK------------------------------ 1042
               +   + D+ + S     +I+L ++H+                               
Sbjct: 1191 NVYYEMPDFDVTRISPWLL-RIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNA 1249

Query: 1043 ---VLDFRKLEIFPPVDKSKIHFELYSL-----------KNVLPMVIVKGIKTVERVVIA 1088
               VL  R +      D++K   E+               N+L  + ++GI+ + +V + 
Sbjct: 1250 EKLVLRIRIMN----SDENKFQEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMH 1305

Query: 1089 EKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLG 1142
              + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I E+   LG
Sbjct: 1306 LPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLG 1365

Query: 1143 IEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLA 1202
            IEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR GI + D   LM  
Sbjct: 1366 IEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKC 1425

Query: 1203 SFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            SFE+T D L  AS +G  D ++GVSE I++G   P GTG   +
Sbjct: 1426 SFEETVDVLMEASSHGESDPMKGVSENIMLGQLAPAGTGCFDL 1468


>gi|390462987|ref|XP_003732945.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
           [Callithrix jacchus]
          Length = 1899

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 182 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 241

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 242 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 301

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 302 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 361

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 362 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 419

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 420 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 479

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 480 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 539

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 540 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 588

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 589 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 643

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 644 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 702

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 703 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 762

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 763 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 822

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 823 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 873

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 874 ----ATLKPSNKAF 883



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1041 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1100

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1101 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1160

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1161 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1220

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1221 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1270

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1271 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1330

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1331 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1390

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1391 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1440


>gi|294495210|ref|YP_003541703.1| DNA-directed RNA polymerase, subunit A' [Methanohalophilus mahii
           DSM 5219]
 gi|292666209|gb|ADE36058.1| DNA-directed RNA polymerase, subunit A' [Methanohalophilus mahii
           DSM 5219]
          Length = 886

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 277/717 (38%), Positives = 416/717 (58%), Gaps = 29/717 (4%)

Query: 84  YILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNE 140
           Y L P  +    +R+ D D +V+ +   S RPE +++T +AVPP+ +RPS+ ++  Q +E
Sbjct: 179 YKLTPTEIRDRLERIPDDDLKVMGMDPESARPEWMVLTVLAVPPVTVRPSITLESGQRSE 238

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVA 199
           +D+T +L  II+ N   Q+              WE LQ  +  + +++V GVP +  +  
Sbjct: 239 DDLTHKLVDIIRINQRFQENRDAGAPQLIIEDLWELLQYHLTTFFDNEVSGVPPARHRSG 298

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RPL    QRLKGK+GRFRG+LSGKRV ++ RTV+SPDPNL I EV +P ++A+ +T P R
Sbjct: 299 RPLKTLTQRLKGKEGRFRGSLSGKRVNFSARTVVSPDPNLSINEVGVPYQIAKHMTIPVR 358

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V   N+E +R  +  G + +PGA  +   DG    +    + +L+ +L+ G  V+R ++D
Sbjct: 359 VISRNLEMMRAYVARGGETHPGANYVFREDGRRLKITEANKEELSEKLEPGWTVERQMQD 418

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+VLFNRQPSLH+MSIM H+ +++P +T + N +VC PYNADFDGDEMNMHV QTEE+R
Sbjct: 419 GDIVLFNRQPSLHKMSIMAHKVKVLPNKTFKLNPAVCPPYNADFDGDEMNMHVLQTEESR 478

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRA-AFSLMCCYMGDGM 438
            EA +LM VQ N+ +P+ G  ++    D ++  FL+TR +    +  A  L+        
Sbjct: 479 AEANILMQVQENILSPRFGGPIIGGIHDHISGMFLLTRNENMISKNDALELL-----RKS 533

Query: 439 DRVDLPTPAILKPV--ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
           +  +LP PA    V    WTGKQ+FS ++    N+    N+  K      +         
Sbjct: 534 EVRELPEPAGYTDVGDPFWTGKQIFSQILPKDLNLEFKANVCFKCDVCKGR--------- 584

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
                 C  D +V   N EL++G + +  +G      L S++ R YG    +  ++ + +
Sbjct: 585 -----DCEYDAYVVVENGELVTGTIDEKAIGAFKGKILDSIVKR-YGTTEAAQFVDDMTR 638

Query: 557 LSARWIGNHGFSIGIDDVQ-PKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           L+ R +   G S GI D   P++   +   +L     EV  + I+ Y   +L+  PG   
Sbjct: 639 LAIRGVMRTGLSFGISDEDIPREAKLNIDEELERAENEVAEL-IQAYEAKELEPLPGRTL 697

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
           A+T+E  I   L + R+  G      L   NS +IM++ G++GS +N++QM ACVGQQ+V
Sbjct: 698 AETIELKIMQSLGKARDHTGTIAGNHLGLENSAVIMAKSGARGSMLNLTQMAACVGQQAV 757

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G R   G+  R+LPHF R      A GFV +S+ SGL+ TE+FFH++GGREGLVDTAV+
Sbjct: 758 RGERIRRGYEGRTLPHFDRGDLGADAHGFVKSSYKSGLNPTEYFFHSVGGREGLVDTAVR 817

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLN 792
           T+ +GY+ RRL+ AL+DL +QYD SVR   G IVQF YG+DG+D    +  S E ++
Sbjct: 818 TSQSGYLQRRLVNALQDLEVQYDRSVRETRGVIVQFKYGEDGIDSTKSDYSSEETVH 874


>gi|336378579|gb|EGO19737.1| DNA-directed RNA polymerase II, subunit 1 [Serpula lacrymans var.
           lacrymans S7.9]
          Length = 1744

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 295/706 (41%), Positives = 424/706 (60%), Gaps = 33/706 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNE 140
           +  P  V   FK+M+D+D  ++ LS+   RPE +I+T + VPP  +RPS+ +DG +  +E
Sbjct: 212 LFTPSEVYTTFKKMSDSDLHLIGLSDEYARPEWMILTVMPVPPPPVRPSIAVDGGAMRSE 271

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA- 199
           +D+T +L  II+ + ++++   E   A       + LQ  VA Y+++D+ G+P ++Q + 
Sbjct: 272 DDLTYKLGDIIKASVNVRRCEQEGAPAHVITEFEQLLQFHVATYMDNDIAGIPQALQKSG 331

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ EV +P  +A  LTYPER
Sbjct: 332 RPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPER 391

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI  L++ ++NGP  YPGAR +    G    L  ++  +    L+ G IV+RHL+D
Sbjct: 392 VTPYNIAYLQELVRNGPTAYPGARYVVRDTGERIDL--RYNKRADAFLQYGWIVERHLKD 449

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD VLFNRQPSLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMNMHVPQ+EE R
Sbjct: 450 GDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETR 509

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   +  V   + +P+  + ++   QD L      T +DTF D      +  ++ D   
Sbjct: 510 AELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDG 569

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
            V  P P+I+KP  LWTGKQ+ S++I    N+         E   SN +           
Sbjct: 570 NV--PIPSIIKPKPLWTGKQILSMVIPRGINIH-----RAPEPKSSNPVF---------- 612

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
                +DG +   N E++ G + K T+G  ++ GL  V+ R+ G  AT      +  +  
Sbjct: 613 -----DDGML-IENGEIVFGIVEKKTVG-ASQGGLVHVVFREKGPDATRQIFTGIQMVVN 665

Query: 560 RWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
            W+ ++GFSIGI D +   K +S    ++ S+  +V  + I +    +L+  PG    ++
Sbjct: 666 FWLFHNGFSIGIGDTIADTKTMSYITQQISSQKVKVAGI-IDDATHDRLKAAPGMTIRES 724

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            E+ +   LN  R+D G+    SL   N+   M   GSKGS INISQM  CVGQQSV GR
Sbjct: 725 FESKVQRELNLARDDCGQYAQKSLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGR 784

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R P GF  R+LPHF +    P A+GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+
Sbjct: 785 RIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 844

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           TGY+ RRL+KALED+ + YD +VRN+ G +VQF+YG+DGMD A +E
Sbjct: 845 TGYIQRRLVKALEDVMVCYDGTVRNSLGDLVQFVYGEDGMDGAFIE 890



 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/403 (32%), Positives = 199/403 (49%), Gaps = 57/403 (14%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +++    V  G   G + AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEIIN A  
Sbjct: 1064 AKFNQSLVNPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATN 1123

Query: 955  ISTPIITAELECNDNENA----ARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDME 1010
            I TP ++  LE +  E      A+ V+  +  T L  V  +++I      +S +I  D  
Sbjct: 1124 IKTPSLSVYLESDIAEEVSGMLAKNVQQELAYTSLRTVTAAVEIWYDPDPSSTIIEEDSV 1183

Query: 1011 TIQDAHLCINADIVKESIVQTPKI-KLKQQHIKVLDFRKLEIFPPVDKSKIHFE------ 1063
             ++      + +I  +  +Q+P + +L+    K++D RKL +     +    F+      
Sbjct: 1184 FVESFFAIPDEEIESKLHLQSPWLLRLELDRAKMID-RKLTMSYVAGRIAESFKTDLFVI 1242

Query: 1064 -----------------------------------LYSLKN-VLPMVIVKGIKTVERVVI 1087
                                               L  L+N +L  V ++G+K +ERV +
Sbjct: 1243 WSEDNSEKLIIRCRVLGGGDKEDDDGLGSIEEDIFLRQLENTMLNSVSLRGVKDIERVFL 1302

Query: 1088 AEKEKEKRKVKENGE-----KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLG 1142
             + +K    V  N E     KK++ L  +G  L+ VM  +G+D  +T SN   EV   LG
Sbjct: 1303 LQHDK----VYFNDEGSIKSKKEWVLETDGVNLKTVMCIDGVDFRRTYSNSCVEVFNVLG 1358

Query: 1143 IEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLA 1202
            IEAAR  I+ E+   ++     ++ RH+ LL DLMT RG ++ ITR GI + D   LM  
Sbjct: 1359 IEAARAAIMKELRGVIEFESSYVNYRHLALLCDLMTHRGTLMAITRHGINRADTGALMRC 1418

Query: 1203 SFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            SFE+T + L  A+  G  D   G++E ++ G   P+GTG  ++
Sbjct: 1419 SFEETVEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFEV 1461


>gi|293340189|ref|XP_002724554.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
           [Rattus norvegicus]
 gi|293351610|ref|XP_002727769.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
           [Rattus norvegicus]
          Length = 1932

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDVTRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|426238812|ref|XP_004013338.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Ovis aries]
          Length = 1897

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  174 bits (441), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/401 (30%), Positives = 197/401 (49%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L      +A R   +  R+E T L +V  +  I       S V+A D E +
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIK------------------------------ 1042
               +   + D+ + S     +++L ++H+                               
Sbjct: 1194 NVYYEMPDFDVARISPWLL-RVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNA 1252

Query: 1043 ---VLDFRKL--------EIFPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEK 1090
               VL  R +        E    VDK      L  ++ N+L  + ++GI+ + +V +   
Sbjct: 1253 EKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLP 1312

Query: 1091 EKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
            + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I E+   LGIE
Sbjct: 1313 QTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIE 1372

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            A R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D   LM  SF
Sbjct: 1373 AVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSF 1432

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1433 EETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|194217622|ref|XP_001918406.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
           subunit RPB1-like [Equus caballus]
          Length = 1834

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNN-ELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  173 bits (439), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 124/401 (30%), Positives = 197/401 (49%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L      +A R   +  R+E T L +V  +  I       S V+A D E +
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIK------------------------------ 1042
               +   + D+ + S     +++L ++H+                               
Sbjct: 1194 NVYYEMPDFDVARISPWLL-RVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNA 1252

Query: 1043 ---VLDFRKL--------EIFPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEK 1090
               VL  R +        E    VDK      L  ++ N+L  + ++GI+ + +V +   
Sbjct: 1253 EKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLP 1312

Query: 1091 EKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
            + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I E+   LGIE
Sbjct: 1313 QTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIE 1372

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            A R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D   LM  SF
Sbjct: 1373 AVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSF 1432

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1433 EETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|109488292|ref|XP_343923.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
           [Rattus norvegicus]
 gi|109491096|ref|XP_001079162.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
           [Rattus norvegicus]
          Length = 1970

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDVTRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|345800197|ref|XP_857844.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
           subunit RPB1 isoform 3 [Canis lupus familiaris]
          Length = 1970

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDVTRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|448579179|ref|ZP_21644456.1| DNA-directed RNA polymerase subunit A' [Haloferax larsenii JCM
           13917]
 gi|445723858|gb|ELZ75494.1| DNA-directed RNA polymerase subunit A' [Haloferax larsenii JCM
           13917]
          Length = 973

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 281/723 (38%), Positives = 409/723 (56%), Gaps = 43/723 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++   F+ + D D   L +     RPE +I+T + VPP+  RPS+ +D  Q +E+D
Sbjct: 247 LMPSDIRDWFEDIPDEDLVTLGIDPDRSRPEWMILTVLPVPPVTARPSITLDNGQRSEDD 306

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N    +              WE LQ  V  +I++++ G P +  +  RP
Sbjct: 307 LTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFIDNEISGTPPARHRSGRP 366

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+A  +T    V+
Sbjct: 367 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVATEMTQTMNVT 426

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
           D NI++ RQ ++NGP+ +PGA  +R PDG    +  K   +LA +++ G  V+RHL DGD
Sbjct: 427 DRNIDEARQYVRNGPESHPGANYVRRPDGRRLKVTEKNCEELAEKVEVGWEVNRHLVDGD 486

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +V+FNRQPSLHRMSIM H   +MP++T R N  VC PYNADFDGDEMNMH  Q EEAR E
Sbjct: 487 IVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAE 546

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDT-FYDRAAFSLMCCYMGDGMDR 440
           A +LM VQ  + +P+ GE ++ + QD ++ ++L+T  +  F +  A  L+         R
Sbjct: 547 ARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTHDNPHFVETQALDLLRAT------R 600

Query: 441 VD-LPTPAILKP--VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
           VD LP PA         WTG Q+FS L+    NM            +++K+  T      
Sbjct: 601 VDTLPEPAGEDDDGTPYWTGHQIFSELLPDDLNME-----------FTSKVGDT------ 643

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
                      V   + +L+ G + +  +G    + +  VL +DY    +   +N +A L
Sbjct: 644 -----------VVIEDGQLLEGTIDEDAVGAFGGE-IVDVLAKDYSKTRSRIFINEIASL 691

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
           + R I + G SIGIDD     E + +  + I   Y+     I+ Y  G+L+  PG    +
Sbjct: 692 AMRAIMHFGLSIGIDDESIPDEATAQVDEAIDAAYDKIQELIEIYEAGELESLPGRSVDE 751

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           TLE  I   L + R+ AG+         N  ++MS+ G++ S +N++QM  CVGQQ+V G
Sbjct: 752 TLEMKIMQRLGKARDSAGEIAEDHFDEDNPAVVMSKSGARASMLNLTQMAGCVGQQAVRG 811

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            R   G+ +R+L H+ +      A GFV NS+ +GL+  EFFFH MGGREGLVDTAV+T+
Sbjct: 812 ERINRGYEERTLSHYQKGDLSAEAHGFVENSYCAGLTPREFFFHAMGGREGLVDTAVRTS 871

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
            +GY+ RRLI AL +L  QYD SVR+  G IVQF +G+DG  P  +     +P++ D + 
Sbjct: 872 KSGYLQRRLINALSELEAQYDGSVRDTSGTIVQFEFGEDGTSPVKVSSGDDKPIDVDAIA 931

Query: 798 MKV 800
            +V
Sbjct: 932 DRV 934


>gi|126309154|ref|XP_001364909.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
           [Monodelphis domestica]
          Length = 1932

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 291/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS+++  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDTTRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|374635618|ref|ZP_09707213.1| DNA-directed RNA polymerase subunit A' [Methanotorris formicicus
           Mc-S-70]
 gi|373561684|gb|EHP87913.1| DNA-directed RNA polymerase subunit A' [Methanotorris formicicus
           Mc-S-70]
          Length = 889

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/731 (38%), Positives = 444/731 (60%), Gaps = 35/731 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P +V  + +++ D DC +L L+    RPE +++T + +PP+ +RPS+ ++  + +E+
Sbjct: 178 LLTPSDVREILEKIPDEDCVLLGLNPEVMRPEWMVLTVLPIPPVTVRPSITLESGERSED 237

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVAR 200
           D+T +L  II+ N  L++ +            W+ LQ  V  Y +++  G+P +  +  R
Sbjct: 238 DLTHKLVDIIRINQRLEENIEGGAPNLIIEDLWDLLQYHVNTYFDNEAPGIPPARHRSGR 297

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GRFR NL+GKRV ++ RTVISPDP L I EV +P  +A+ LT PE+V
Sbjct: 298 PLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPCLSINEVGVPEVVAKELTVPEKV 357

Query: 261 SDHNIEKLRQCIQNGPDKYPGA----RMIRYPDGTARVLYGKFRNQ---LAVE-LKSGCI 312
           + +NI K+R+ ++NG +K+PG     R ++  DG    +  K  ++     VE ++ G +
Sbjct: 358 TKYNINKIRELLKNGSEKHPGVNYVIRKVKLRDGREEEVKIKITDKNKDFWVENIEEGMV 417

Query: 313 VDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHV 372
           V+RHL DGD+VL+NRQPSLHRMSIM H+ +++P+RT R N  VC PYNADFDGDEMN+HV
Sbjct: 418 VERHLMDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVCPPYNADFDGDEMNLHV 477

Query: 373 PQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCC 432
           PQ+EEAR EA  LM V+ ++ +P+ G  ++ +  DF+T ++L+T      D A+  L   
Sbjct: 478 PQSEEARAEAEALMLVEKHILSPRFGGPIIGAIHDFITGAYLLTSSYFTKDEASIILR-- 535

Query: 433 YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
             G G+         I   V L++GK++FS  +    N++           Y  K+ +  
Sbjct: 536 --GGGIKEELWEPDKIENGVPLYSGKKIFSKALPKGLNLK-----------YRAKICKK- 581

Query: 493 GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGL-YSVLLRDYGAHATSGCM 551
             +E + E  CP+D +V  +N ELI G + K   G G + G+    +++++G+      +
Sbjct: 582 -CDECKKED-CPHDAYVVIKNGELIKGVVDKN--GFGAEAGIILDTIVKEFGSEEARKFL 637

Query: 552 NRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
           +   K++ R I   GF+ GIDD    ++   +  +++ +  E  N  I++Y  G+L+  P
Sbjct: 638 DSSTKMAIRAIMIKGFTTGIDDEDIPEDAEREIQEILDKAEEEVNEIIRKYENGELEPLP 697

Query: 612 GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
           G    ++ EA I  IL + R++AG      L   N   +M++ G++GS +NI+ M ACVG
Sbjct: 698 GRSLEESREAYIMKILGKARDEAGAVAERYLSKDNHAALMARTGARGSLLNITMMSACVG 757

Query: 672 QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
           QQSV G R   G+ +R LPHF + + +  + GFV +S+  GLS  E+FFH MGGREGLVD
Sbjct: 758 QQSVRGGRIFRGYRNRVLPHFKKGSLDAKSHGFVRSSYKKGLSPIEYFFHAMGGREGLVD 817

Query: 732 TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL 791
            AV+TA +GYM RRL+ AL+DL  +YD +VR++ G IVQF+YG+DG+DP+  +   G+ +
Sbjct: 818 QAVRTAQSGYMQRRLVNALQDLKAEYDGTVRDSRGTIVQFVYGEDGVDPSKAD--HGKAV 875

Query: 792 NFDRLLMKVKA 802
           + D+++ KVKA
Sbjct: 876 DIDKIINKVKA 886


>gi|332847192|ref|XP_511300.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Pan
           troglodytes]
          Length = 1907

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  171 bits (432), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/411 (30%), Positives = 198/411 (48%), Gaps = 71/411 (17%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIA------ 1006
              TP +T  L      +A R   +  R+E T L +V  +  I       S V+A      
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1007 ----------------------LDMETIQDAHL------------------CINAD---- 1022
                                  LD + + D  L                  CI  D    
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1023 --IVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIK 1080
              +++  I+ + + K+ Q+  +V+D    ++F    +S          N+L  + ++GI+
Sbjct: 1254 KLVLRIRIMNSDENKMXQEE-EVVDKMDDDVFLRCIES----------NMLTDMTLQGIE 1302

Query: 1081 TVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHI 1134
             + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I
Sbjct: 1303 QISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDI 1362

Query: 1135 FEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKM 1194
             E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + 
Sbjct: 1363 VEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQ 1422

Query: 1195 DKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            D   LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1423 DTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|426383939|ref|XP_004058534.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
           [Gorilla gorilla gorilla]
          Length = 1921

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  174 bits (441), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/401 (30%), Positives = 197/401 (49%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L      +A R   +  R+E T L +V  +  I       S V+A D E +
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIK------------------------------ 1042
               +   + D+ + S     +++L ++H+                               
Sbjct: 1194 NVYYEMPDFDVARISPWLL-RVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNA 1252

Query: 1043 ---VLDFRKL--------EIFPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEK 1090
               VL  R +        E    VDK      L  ++ N+L  + ++GI+ + +V +   
Sbjct: 1253 EKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLP 1312

Query: 1091 EKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
            + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I E+   LGIE
Sbjct: 1313 QTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIE 1372

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            A R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D   LM  SF
Sbjct: 1373 AVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSF 1432

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1433 EETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|2145091|gb|AAB58418.1| RNA polymerase II largest subunit [Mus musculus]
          Length = 1966

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|336364350|gb|EGN92710.1| hypothetical protein SERLA73DRAFT_98944 [Serpula lacrymans var.
           lacrymans S7.3]
          Length = 1741

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 295/706 (41%), Positives = 424/706 (60%), Gaps = 33/706 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNE 140
           +  P  V   FK+M+D+D  ++ LS+   RPE +I+T + VPP  +RPS+ +DG +  +E
Sbjct: 209 LFTPSEVYTTFKKMSDSDLHLIGLSDEYARPEWMILTVMPVPPPPVRPSIAVDGGAMRSE 268

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA- 199
           +D+T +L  II+ + ++++   E   A       + LQ  VA Y+++D+ G+P ++Q + 
Sbjct: 269 DDLTYKLGDIIKASVNVRRCEQEGAPAHVITEFEQLLQFHVATYMDNDIAGIPQALQKSG 328

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ EV +P  +A  LTYPER
Sbjct: 329 RPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPER 388

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI  L++ ++NGP  YPGAR +    G    L  ++  +    L+ G IV+RHL+D
Sbjct: 389 VTPYNIAYLQELVRNGPTAYPGARYVVRDTGERIDL--RYNKRADAFLQYGWIVERHLKD 446

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD VLFNRQPSLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMNMHVPQ+EE R
Sbjct: 447 GDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETR 506

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   +  V   + +P+  + ++   QD L      T +DTF D      +  ++ D   
Sbjct: 507 AELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDG 566

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
            V  P P+I+KP  LWTGKQ+ S++I    N+         E   SN +           
Sbjct: 567 NV--PIPSIIKPKPLWTGKQILSMVIPRGINIH-----RAPEPKSSNPVF---------- 609

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
                +DG +   N E++ G + K T+G  ++ GL  V+ R+ G  AT      +  +  
Sbjct: 610 -----DDGML-IENGEIVFGIVEKKTVG-ASQGGLVHVVFREKGPDATRQIFTGIQMVVN 662

Query: 560 RWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
            W+ ++GFSIGI D +   K +S    ++ S+  +V  + I +    +L+  PG    ++
Sbjct: 663 FWLFHNGFSIGIGDTIADTKTMSYITQQISSQKVKVAGI-IDDATHDRLKAAPGMTIRES 721

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            E+ +   LN  R+D G+    SL   N+   M   GSKGS INISQM  CVGQQSV GR
Sbjct: 722 FESKVQRELNLARDDCGQYAQKSLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGR 781

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R P GF  R+LPHF +    P A+GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+
Sbjct: 782 RIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 841

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           TGY+ RRL+KALED+ + YD +VRN+ G +VQF+YG+DGMD A +E
Sbjct: 842 TGYIQRRLVKALEDVMVCYDGTVRNSLGDLVQFVYGEDGMDGAFIE 887



 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/403 (32%), Positives = 199/403 (49%), Gaps = 57/403 (14%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +++    V  G   G + AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEIIN A  
Sbjct: 1061 AKFNQSLVNPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATN 1120

Query: 955  ISTPIITAELECNDNENA----ARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDME 1010
            I TP ++  LE +  E      A+ V+  +  T L  V  +++I      +S +I  D  
Sbjct: 1121 IKTPSLSVYLESDIAEEVSGMLAKNVQQELAYTSLRTVTAAVEIWYDPDPSSTIIEEDSV 1180

Query: 1011 TIQDAHLCINADIVKESIVQTPKI-KLKQQHIKVLDFRKLEIFPPVDKSKIHFE------ 1063
             ++      + +I  +  +Q+P + +L+    K++D RKL +     +    F+      
Sbjct: 1181 FVESFFAIPDEEIESKLHLQSPWLLRLELDRAKMID-RKLTMSYVAGRIAESFKTDLFVI 1239

Query: 1064 -----------------------------------LYSLKN-VLPMVIVKGIKTVERVVI 1087
                                               L  L+N +L  V ++G+K +ERV +
Sbjct: 1240 WSEDNSEKLIIRCRVLGGGDKEDDDGLGSIEEDIFLRQLENTMLNSVSLRGVKDIERVFL 1299

Query: 1088 AEKEKEKRKVKENGE-----KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLG 1142
             + +K    V  N E     KK++ L  +G  L+ VM  +G+D  +T SN   EV   LG
Sbjct: 1300 LQHDK----VYFNDEGSIKSKKEWVLETDGVNLKTVMCIDGVDFRRTYSNSCVEVFNVLG 1355

Query: 1143 IEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLA 1202
            IEAAR  I+ E+   ++     ++ RH+ LL DLMT RG ++ ITR GI + D   LM  
Sbjct: 1356 IEAARAAIMKELRGVIEFESSYVNYRHLALLCDLMTHRGTLMAITRHGINRADTGALMRC 1415

Query: 1203 SFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            SFE+T + L  A+  G  D   G++E ++ G   P+GTG  ++
Sbjct: 1416 SFEETVEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFEV 1458


>gi|260796451|ref|XP_002593218.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
 gi|229278442|gb|EEN49229.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
          Length = 1934

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 285/702 (40%), Positives = 417/702 (59%), Gaps = 28/702 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL +FKR++D +C ++ +  R   P+ ++ T + V P+ +RPSV+M G+   ++D+T +L
Sbjct: 217 VLEIFKRISDEECSIMGMDPRFARPDWMVCTVLPVAPLQVRPSVVMFGAARGQDDLTHKL 276

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             I++ N  L++  +   +A       + LQ  V   ++++V G+P ++Q + RPL    
Sbjct: 277 ADIVKINNQLKRNEMNGAAAHIIAEDTKMLQFHVTTLVDNEVPGMPRAVQKSGRPLKSVK 336

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
           QRLKGK+GR RGNL GKRV+++ R VI+PDPNL+I +V  P  +A+ LT+PE V+  NI+
Sbjct: 337 QRLKGKEGRIRGNLMGKRVDFSARAVITPDPNLQIDQVGCPRTVAQNLTFPEIVTPFNID 396

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           ++++ ++ G ++YPGA+ I   D   R+          + L+ G  V+RH+ D D+V+FN
Sbjct: 397 RMQELVRRGANQYPGAKYIIR-DTGHRIDLRYHPKPSDLHLQCGYKVERHIRDDDIVIFN 455

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQP+LH+MS+M HR +I+PW T R N SV  PYNADFDGDEMNMHVPQ+ E R E + L 
Sbjct: 456 RQPTLHKMSMMGHRVKILPWSTFRLNLSVTTPYNADFDGDEMNMHVPQSVETRAEIMELA 515

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLP 444
            V   + TP++   ++   QD LT+    T++D F DR      LM     DG     +P
Sbjct: 516 MVPRMIITPQSNRPVMGIVQDTLTAVRKFTKRDVFIDRNDMMNLLMWLPTWDG----KMP 571

Query: 445 TPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMC 503
            PAILKP  LWTGKQLFS++I  H N +R++     +E +   K I              
Sbjct: 572 QPAILKPKPLWTGKQLFSLIIPGHVNCIRMHSTHPDEEDSGPYKWI-------------S 618

Query: 504 PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIG 563
           P D  V   N ELISG L K +LG      ++ V L + G   +      +  +   W+ 
Sbjct: 619 PGDTKVIVENGELISGILCKKSLGPSGGSLVHIVAL-EMGHETSKLFYGYIQTVVNNWLL 677

Query: 564 NHGFSIGIDD-VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAV 622
             G +IGI D +   +   D +  +     +V  V  K +N+ +L+  PG    QT E  
Sbjct: 678 LEGHTIGIGDCIADTQTYQDIQNTIKKAKLDVIEVIEKAHND-ELEPTPGNTLRQTFENQ 736

Query: 623 ITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPN 682
           +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P 
Sbjct: 737 VNRILNDARDKTGGSAQKSLSEFNNFKSMVVAGSKGSKINISQVIACVGQQNVEGKRIPF 796

Query: 683 GFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYM 742
           GF  R+LPHF +    P ++GFV NS+ +GL+ +EFFFH MGGREGL+DTAVKT++TGY+
Sbjct: 797 GFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTSETGYI 856

Query: 743 SRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
            RRLIKA+E + I YD +VRN+   +VQ  YG+DG+D  ++E
Sbjct: 857 QRRLIKAMESVMIAYDGTVRNSNRHLVQLRYGEDGLDAVSIE 898



 Score =  172 bits (437), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 129/397 (32%), Positives = 201/397 (50%), Gaps = 51/397 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+    V+ G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN +K+
Sbjct: 1070 SRFNQAIVQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKK 1129

Query: 955  ISTPIITAEL---ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
              TP +T  L     ND E A  ++  R+E T L +V  +  I       + VI  D E 
Sbjct: 1130 PKTPSLTVFLLGQPANDAEKAKDIL-CRLEHTTLRKVTANTAIYYDPDPQNTVIEEDQEF 1188

Query: 1012 IQ--------DAH------LCINAD--------IVKESIVQ------------------T 1031
            +         D H      L I  D        +  ESI +                   
Sbjct: 1189 VNVYYEMPDFDPHRISPWLLRIELDRKRMTDKKLTMESIAEKINAGFGDDLNCIFNDDNA 1248

Query: 1032 PKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEK 1090
             K+ L+ + +   D + ++    VDK      L  ++ N+L  + ++GI+ + +V +   
Sbjct: 1249 EKLVLRIRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGIEQIAKVYMHLP 1308

Query: 1091 EKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
            +++ +K   + + GE K   ++ L  +G  L  V+  + +D  +T SN I E+ Q LGIE
Sbjct: 1309 QQDTKKRIIITDEGEYKALQEWILETDGVNLMKVLSEKNVDPVRTTSNDIVEIFQILGIE 1368

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            A R  I  E+N  +   G  ++ RH+ LL D+MT +G ++ ITR GI + +   LM  SF
Sbjct: 1369 AVRKAIEKEMNHVISFDGSYVNYRHLALLCDIMTQKGHLMAITRHGINRQEVGPLMKCSF 1428

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            E+T D L  ++ +   D + GVSE I++G    +GTG
Sbjct: 1429 EETVDILMESASHSETDFMWGVSENIMLGQLARIGTG 1465


>gi|6677795|ref|NP_033115.1| DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]
 gi|200794|gb|AAA40071.1| RNA polymerase II [Mus musculus]
          Length = 1932

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|68370162|ref|XP_682682.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
           [Danio rerio]
          Length = 1972

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 288/702 (41%), Positives = 421/702 (59%), Gaps = 28/702 (3%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR+ D +  +L +     RPE +I+T + VPP+A+RP+V+M GS  N++
Sbjct: 212 LLSPERVHEIFKRIADEEDIILGMDPKYARPEWMIVTVLPVPPLAVRPAVVMQGSARNQD 271

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 272 DLTHKLADIVKINNQLKRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 331

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A  +T+PE V
Sbjct: 332 PLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIV 391

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ D
Sbjct: 392 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQIGYKVERHMCD 449

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+++FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 450 GDIIVFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 509

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 510 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 569

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR- 498
           +V  P PAILKP  LWTGKQ+FS++I  H N           +T+S     T  DEE   
Sbjct: 570 KV--PQPAILKPRPLWTGKQIFSLIIPGHINAI---------RTHS-----THPDEEDSG 613

Query: 499 -IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
             + + P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  +
Sbjct: 614 PYKNISPGDTKVIVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTV 672

Query: 558 SARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
              W+   G SIGI D +  K    D +  +     +V  V  K +N  +L+  PG    
Sbjct: 673 VNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLR 731

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           QT E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++A VGQQ+V 
Sbjct: 732 QTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVE 791

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKT
Sbjct: 792 GKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKT 851

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
           A+TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+
Sbjct: 852 AETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL 893



 Score =  174 bits (441), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 199/403 (49%), Gaps = 55/403 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +KR
Sbjct: 1071 TKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKR 1130

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L      +A R   +  R+E T L +V  +  I       + V+  D E +
Sbjct: 1131 PKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWV 1190

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQH-------------------------------- 1040
               +   + D+ + S     +I+L ++H                                
Sbjct: 1191 NVYYEMPDFDVTRISPWLL-RIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNA 1249

Query: 1041 ------IKVLD-----FRKLEIFPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIA 1088
                  I++++     F++ E    VDK      L  ++ N+L  + ++GI+ + +V + 
Sbjct: 1250 EKLVLRIRIMNSDENKFQEDEEV--VDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMH 1307

Query: 1089 EKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLG 1142
              + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I E+   LG
Sbjct: 1308 LPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLG 1367

Query: 1143 IEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLA 1202
            IEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR GI + D   LM  
Sbjct: 1368 IEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKC 1427

Query: 1203 SFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            SFE+T D L  AS +G  D ++GVSE I++G   P GTG   +
Sbjct: 1428 SFEETVDVLMEASSHGESDPMKGVSENIMLGQLAPAGTGCFDL 1470


>gi|395646424|ref|ZP_10434284.1| DNA-directed RNA polymerase subunit A' [Methanofollis liminatans
           DSM 4140]
 gi|395443164|gb|EJG07921.1| DNA-directed RNA polymerase subunit A' [Methanofollis liminatans
           DSM 4140]
          Length = 880

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 277/717 (38%), Positives = 419/717 (58%), Gaps = 31/717 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++    +R+ D D  +L ++    RPE  I+T + VPP+ +RPS+I++  Q +E+D
Sbjct: 172 LTPADIRARLERIPDDDLRLLGINPDVARPEWTILTVLPVPPVTMRPSIILENGQRSEDD 231

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N   ++              WE LQ  V  Y++++V G P +  +  RP
Sbjct: 232 LTHKLVDIIRINQRFKENQDAGAPQLIIEDLWELLQYHVTTYMDNEVAGCPPARHRSGRP 291

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK GRFRG+LSGKRV ++ RTVISPDP L + EV +P+ +A  ++ P RV+
Sbjct: 292 LKTLSQRLKGKDGRFRGSLSGKRVNFSARTVISPDPFLDVNEVGVPLAIANEMSVPVRVT 351

Query: 262 DHNIEKLRQCIQNGPDKY-----PGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
           ++N+E  R  ++NG D+      PGA  +  PD     L  + ++ +A +++ G  V+R 
Sbjct: 352 NYNLEAARFYVRNGVDRKNLIDPPGANYVIRPDQRRIRLSDENKSDVADQIEPGWTVERQ 411

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           L DGD+VLFNRQPSLHRMSIM H  +IM  +T R N +VC PYNADFDGDEMN+HVPQTE
Sbjct: 412 LRDGDIVLFNRQPSLHRMSIMAHHIKIMGGKTFRLNPAVCPPYNADFDGDEMNLHVPQTE 471

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           EA  EA +L+ V+ N+ +P+ G  ++    D ++  FL+T +  ++ +        Y+  
Sbjct: 472 EAMAEAEILVNVEENIRSPRFGGPIIGGIHDHISGIFLLTHEVRWFTKEE----ALYLLR 527

Query: 437 GMDRVDLPTPA-ILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
             +   LP P  +   V  W+ KQ+FS ++ P  NM ++   + K      K        
Sbjct: 528 HAEVEHLPEPGKVENGVAYWSNKQVFSAILPPGINM-IFKASSCKHCDTCKK-------- 578

Query: 496 EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
                 +C  D +V  R+ ELI+G + K  +G  + + + + ++R Y     +  +N + 
Sbjct: 579 -----ELCDQDTYVKMRDGELITGTIDKKAIGAFDGE-IVNRIIRQYSQKRAAQFINDVT 632

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           +LS R I   GFS GIDD    K    +  +++    +    +I  Y +G+L+  PG   
Sbjct: 633 RLSIRAIMFDGFSFGIDDEDLTKTEYGQIKEVLDNAEKDVRRRIAIYEDGQLEPMPGRTE 692

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            +TLE  I  +L + R+  G+     L   NS ++M+  G++GS +N++QM  CVGQQSV
Sbjct: 693 EETLEMQIMQVLGKARDRTGEIASRHLGLSNSAVVMAVSGARGSILNLTQMAGCVGQQSV 752

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G R   G+  R+LPHF R  +  AA GFV +S+ SGL+ TEFFFH +GGREGLVDTAV+
Sbjct: 753 RGERIVRGYDQRTLPHFKRGDRGSAAHGFVRSSYKSGLNPTEFFFHAIGGREGLVDTAVR 812

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLN 792
           T+ +GY+ RR+I AL+DL ++YD SVR  GG ++QF YG+DG DP  ++   G P++
Sbjct: 813 TSQSGYLQRRMINALQDLKVEYDRSVRTTGGRMLQFKYGEDGTDP--VKSNYGAPVD 867


>gi|133327|sp|P08775.3|RPB1_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
           Short=RNA polymerase II subunit B1; AltName:
           Full=DNA-directed RNA polymerase II subunit A; AltName:
           Full=DNA-directed RNA polymerase III largest subunit
          Length = 1970

 Score =  508 bits (1308), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|123979324|gb|ABM81487.1| RNA polymerase II largest subunit [Cladonia stipitata]
          Length = 984

 Score =  508 bits (1308), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 290/705 (41%), Positives = 426/705 (60%), Gaps = 31/705 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS--NE 140
           + P   L +F+ +++ D   L LS+   RPE +IIT + VPP  +RPS+ +DG      E
Sbjct: 116 ITPQMALNIFRHISEEDIATLGLSKDYARPEWMIITVLPVPPPPVRPSISVDGGNGMRGE 175

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA- 199
           +D+T +L  II+ N ++++   E + A       + LQ  VA Y+++D+ G P ++Q + 
Sbjct: 176 DDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSG 235

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYPE 
Sbjct: 236 RPVKLIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSVARTLTYPET 295

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI KL Q ++NGP+ +PGA+ +   DG  R+     +    + L+ G  V+RH+ D
Sbjct: 296 VTPYNIHKLHQLVKNGPNDHPGAKYVIRADG-ERIDLRHHKRAGEISLQYGWKVERHIVD 354

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R
Sbjct: 355 GDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 414

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V  N+ + +    L+   QD L  ++ + R+D F  + A   +  ++ D  D
Sbjct: 415 AEVNQLCMVPLNIVSSQRNGPLMGIVQDTLCGTYKMCRRDVFMTKEAVMNILLWVPD-WD 473

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
            V +P PAI+KP  +WTGKQ+ S++I    N   Y+           KL  TEG      
Sbjct: 474 GV-IPQPAIIKPRPMWTGKQILSLVIPAGLN---YM-----------KLDETEG------ 512

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
            T   ++G  +    EL+ G L K  +G   + G+  ++  + G+ A     N    +  
Sbjct: 513 FTALTDEG-QFIHGGELMFGLLDKKAVGAATQ-GVIHLIFNELGSDAAMSFFNGAQTVVN 570

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
            W+ ++GFSIGI D  P +   ++   +++   +      +     +L+  PG +   T 
Sbjct: 571 YWLLHNGFSIGIGDTIPDRGTINRIKTVVNAQKQEVEEITQSAQLNELESLPGMNVRDTF 630

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E+ +++ LN+ RE+AGK    SL   N+ + M++ GSKG+ INISQM A VGQQSV G+R
Sbjct: 631 ESKVSNALNKAREEAGKVTEESLKDVNNAIQMARSGSKGTNINISQMTAVVGQQSVEGKR 690

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GF  RSLPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+T
Sbjct: 691 IPFGFKYRSLPHFAKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 750

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           GY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D  ++E
Sbjct: 751 GYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIE 795


>gi|825713|emb|CAA52862.1| RNA polymerase II largest subunit [Homo sapiens]
          Length = 1970

 Score =  508 bits (1308), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 192/410 (46%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G    ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESYPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium
           hominis TU502]
 gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
           [Cryptosporidium hominis]
          Length = 1895

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 290/707 (41%), Positives = 420/707 (59%), Gaps = 26/707 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL +FKR++  D ++L        P   I T I +PP  +RP V   GS  +E+D+T +L
Sbjct: 202 VLTIFKRISHDDMKILGFDPVKCNPSWFINTVIPIPPPTVRPYVQF-GSDRSEDDLTLKL 260

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARPLSGFV 206
           ++II+ N +L++++   +           LQ  +   IN+D+ G+P S  +  RP+    
Sbjct: 261 QQIIKLNENLKKQIRIGSPEHIISEMSTVLQYHLITLINNDLPGLPQSRTRSNRPIKSLR 320

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK GR RGNL GKRV+++ RTVI+ DPNL + +V +P  +A  LTYPE V+ +NIE
Sbjct: 321 ARLKGKDGRIRGNLMGKRVDFSARTVITGDPNLAVDQVGVPYSIAMTLTYPEVVTPYNIE 380

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDVVLF 325
           +L++ +Q GP ++PGA  I   DGT   L +    N     L+ G  V+RH+++ D+VLF
Sbjct: 381 ELKELVQRGPHEWPGATSIIQEDGTKVDLRFSNTSNNSNNMLQYGWKVERHMKNDDLVLF 440

Query: 326 NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
           NRQPSLH+MSIM HR +I+P+ T R N SV +PYNADFDGDEMN+H+ Q+ E R+E   L
Sbjct: 441 NRQPSLHKMSIMGHRVKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSHETRSEIKNL 500

Query: 386 MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDL 443
           M V   + +P+  + ++   QD L   FL+TRK TF  R  F   L+C    +G    ++
Sbjct: 501 MMVPRQIVSPQGNKPVIGIVQDSLLGIFLLTRKSTFLTRDKFLQLLLCIPYWNG----NI 556

Query: 444 PTPAILKPVELWTGKQLFSVLIRPHANM--RVYVNL-------TVKEKTYSNKLIRTEGD 494
           P PAIL+P  LWTGKQ+ +VL+    ++   + +NL       ++K+   S+   + +  
Sbjct: 557 PPPAILRPQPLWTGKQIITVLLAFTTDLGEPIELNLMRDGSIVSIKQSNNSSNTDKDDSK 616

Query: 495 EEIRIETMCPN-DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
           E I         D  V  +  E I G L K   G+ +   L  +L  + G   T   +  
Sbjct: 617 EAIVNNPWISELDNQVIIQKGEHICGVLTKKIAGSSS-GSLIHILWNEIGPEKTGLFLTY 675

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPG 612
              +   W+  HGF++G  D+QP+    +K    L     +V  + I+   +GKL  +PG
Sbjct: 676 TQMVVNTWLLEHGFTVGCQDIQPQNYTLEKIMNSLEGSKLQVQQI-IRRAQKGKLDCQPG 734

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSL-PWRNSPLIMSQCGSKGSPINISQMVACVG 671
               ++ EA +   LN  RE +G     +L   +N+ + M QCGSKGS INISQ++ACVG
Sbjct: 735 KSLIESFEAQVNQELNSARELSGTIATENLDSSKNNIVAMVQCGSKGSTINISQIMACVG 794

Query: 672 QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
           QQ+V G+R P GF DRSLPHF +    P ++GFV+NS+ SGL+  E FFH MGGREG++D
Sbjct: 795 QQNVEGKRIPFGFRDRSLPHFLKYDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIID 854

Query: 732 TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
           TA KT++TGY+ RRLIKA+ED  +QYD +VRN+ G I+QFLYG+DGM
Sbjct: 855 TACKTSETGYIQRRLIKAMEDCMVQYDRTVRNSNGDIIQFLYGEDGM 901



 Score =  174 bits (440), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 125/409 (30%), Positives = 196/409 (47%), Gaps = 72/409 (17%)

Query: 903  EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITA 962
             +G  +G I AQSIGEP TQMTL TFHFAGV S N+T GVPR++E+IN AK + TP +T 
Sbjct: 1107 HSGEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNVRTPTLTV 1166

Query: 963  ELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAH-LC 1018
             LE    ND E A  V+   +E T L  +     I+        ++  D   + D +   
Sbjct: 1167 YLESGIANDQEQAKDVLT-LLEHTTLQNITTIAHILYDPEQDKTIVEADKSWVSDYYEFP 1225

Query: 1019 INADI------------VKESIVQTPKIKLKQQHIKVL-DFRKLE---IFPPVDKSKIHF 1062
             +ADI            +   +V   K+ +K+   K+L +F K E   I+   +  ++  
Sbjct: 1226 DDADITNRLGTWLLRIQLNNKLVTDKKLSMKEIGDKILMEFSKDELDCIWTDDNSDELVL 1285

Query: 1063 ELYSLKNVLP----------------------------------------MVIVKGIKTV 1082
             L  +KN+ P                                         + ++GI  +
Sbjct: 1286 RL-RIKNIEPTNNICDNIHSSEENDSISPSITSGVEEHKFLEKLMTECLSQITLRGINNI 1344

Query: 1083 ERVVIAEKEKEK------RKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFE 1136
            ++V + E++  +      + V++N    ++ L  +G  L+AV+    ID  +T SN I E
Sbjct: 1345 KKVYMKEEQVSRYDSISQKMVRDN----QWVLDTDGCNLEAVLCHTAIDSTRTISNDITE 1400

Query: 1137 VQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDK 1196
            V   LGIEA R  ++ E+   +   G  ++ RH+ LL D MT +G ++ ITR GI ++DK
Sbjct: 1401 VFSVLGIEAVRRALLRELRTVISFDGSYVNYRHLALLCDNMTQKGHLMSITRHGINRVDK 1460

Query: 1197 SVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
              L   SFE+T + L +A++ G  D + GVSE +++G   P GT    +
Sbjct: 1461 GPLQKCSFEETVEVLMDAAMFGETDYLNGVSENVMLGQLAPYGTACFDV 1509


>gi|126309152|ref|XP_001364837.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
           [Monodelphis domestica]
          Length = 1970

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 291/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS+++  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDTTRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|296201388|ref|XP_002748007.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
           [Callithrix jacchus]
          Length = 1937

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 182 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 241

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 242 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 301

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 302 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 361

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 362 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 419

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 420 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 479

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 480 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 539

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 540 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 588

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 589 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 643

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 644 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 702

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 703 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 762

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 763 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 822

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 823 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 873

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 874 ----ATLKPSNKAF 883



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1041 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1100

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1101 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1160

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1161 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1220

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1221 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1270

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1271 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1330

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1331 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1390

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1391 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1440


>gi|351701567|gb|EHB04486.1| DNA-directed RNA polymerase II subunit RPB1 [Heterocephalus glaber]
 gi|417406836|gb|JAA50059.1| Putative rna polymerase i large subunit [Desmodus rotundus]
          Length = 1970

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|344290440|ref|XP_003416946.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Loxodonta
           africana]
          Length = 1970

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|397135876|gb|AFO11433.1| RNA polymerase I, partial [Hyphopichia heimii]
          Length = 872

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/728 (40%), Positives = 431/728 (59%), Gaps = 50/728 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  +L +F+ ++  DC  L  +E   RPE L+IT + VPP  +RPS+  + +   E+
Sbjct: 14  LLTPSEILSVFRHISAEDCHRLGFNEDYARPEWLLITVLPVPPPPVRPSIAFNDTARGED 73

Query: 142 DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  +++ N ++Q+  ++ +     S F++L     LQ  VA Y+++D+ G P ++
Sbjct: 74  DLTFKLADVLKANINVQRLEMDGSPQHVISEFEAL-----LQFHVATYMDNDIAGQPQAL 128

Query: 197 Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q   RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +AR L+
Sbjct: 129 QKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLS 188

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
           YPE V+ +NI +L + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+
Sbjct: 189 YPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVE 246

Query: 315 RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
           RHL D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 247 RHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 306

Query: 375 TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
           + E R E  L+  V   + +P++ + ++   QD L     +T +DTF  YD+    L   
Sbjct: 307 SPETRAELSLICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIEYDQVMNMLYWI 366

Query: 433 YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
              DG+    +P PAI+KP  LW+GKQL S+ I    +++ + + T              
Sbjct: 367 PNWDGV----IPPPAIVKPKPLWSGKQLLSMAIPKGIHLQRFDDGT-------------- 408

Query: 493 GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
                    M P D  +   + E++ G + K T+G     GL   ++R+ G +  +   +
Sbjct: 409 -------NLMSPKDNGMLIVDGEIMFGVVTKLTVG-ATGGGLIHTVMREKGPYVCAQLFS 460

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
            + K+   W+ ++GFSIGI D     +        I E        I E  + KL+ +PG
Sbjct: 461 AIQKVVNYWLLHNGFSIGIGDTIADSDTMKTVTTTIQEAKNKVQEIILEAQQNKLEPEPG 520

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
               ++ E  ++ +LN+ R+ AG++   +L   N+   M   GSKGS INISQM ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 580

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           Q V G+R P GF DRSLPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DT
Sbjct: 581 QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS----- 787
           AVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D   +E +S     
Sbjct: 641 AVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIP 700

Query: 788 GEPLNFDR 795
           G   NF+R
Sbjct: 701 GSHENFER 708


>gi|281185484|sp|P24928.2|RPB1_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
           Short=RNA polymerase II subunit B1; AltName:
           Full=DNA-directed RNA polymerase II subunit A; AltName:
           Full=DNA-directed RNA polymerase III largest subunit;
           AltName: Full=RNA-directed RNA polymerase II subunit
           RPB1
          Length = 1970

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|4505939|ref|NP_000928.1| DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
 gi|345842509|ref|NP_001230931.1| polymerase (RNA) II (DNA directed) polypeptide A [Cricetulus
           griseus]
 gi|332251063|ref|XP_003274666.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Nomascus
           leucogenys]
 gi|403274932|ref|XP_003929214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Saimiri
           boliviensis boliviensis]
 gi|36124|emb|CAA45125.1| RNA polymerase II largest subunit [Homo sapiens]
 gi|2443336|dbj|BAA22377.1| RNA polymerase II largest subunit [Cricetulus griseus]
 gi|14328881|dbj|BAB60684.1| RNA polymerase II largest subunit [Cricetulus griseus]
 gi|119610587|gb|EAW90181.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
           CRA_a [Homo sapiens]
 gi|223460954|gb|AAI37232.1| Polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Homo
           sapiens]
          Length = 1970

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|402898581|ref|XP_003912299.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Papio
           anubis]
          Length = 1970

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|2443334|dbj|BAA22376.1| RNA polymerase II largest subunit [Cricetulus griseus]
          Length = 1970

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|110669639|gb|ABG81914.1| RNA polymerase II largest subunit [Bacidia schweinitzii]
          Length = 1016

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 291/707 (41%), Positives = 421/707 (59%), Gaps = 32/707 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS--NE 140
           + P  VL +F+ +++ D E + LS    RPE +IIT + VPP  +RPS+ +DG      E
Sbjct: 135 ITPQMVLNIFRHISNEDIERMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGLRGE 194

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA- 199
           +D+T +L  II+ N ++Q+   E + A       + LQ  VA Y+++D+ G P ++Q + 
Sbjct: 195 DDLTYKLGDIIRANGNVQRCDAEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSG 254

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +A+ LTYPE 
Sbjct: 255 RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPET 314

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI+KL Q ++NGP+ +PGA+ +   D   R+     +    + L+ G  V+RH+ D
Sbjct: 315 VTPYNIQKLHQLVKNGPNDHPGAKYV-LRDTGERIDLRHHKRAGEISLQYGWKVERHIID 373

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R
Sbjct: 374 GDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 433

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V  N+ +P+    L+   QD L   + I R+D F  R     +  ++ D  D
Sbjct: 434 AEVNQLCMVPLNVVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRDQVMNILLWVPD-WD 492

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
            V +P PAI+KP  +WTGKQL S+++    N                 L+R        +
Sbjct: 493 GV-IPQPAIIKPRAMWTGKQLISLVVPTGLN-----------------LVRPGDHGFFPL 534

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
           E     D  +     EL+ G L KA +G  +  G+  ++  + G+ A     N    L  
Sbjct: 535 E-----DDTLVVLGGELMVGLLKKAYVG-ASPGGIIHIIYNEKGSDAAMSFFNGAQTLVN 588

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
            W+ ++GFSIGI D  P +E   +    ++   +       E    +L+  PG +  +T 
Sbjct: 589 YWLLHNGFSIGIGDTIPDRETILQIQNAVNNQKDEVTKITDEATRNQLESLPGMNVRETF 648

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E+ ++  LN+ R++AG     SL   N+   M++ GSKGS INISQM A VGQQSVGG+R
Sbjct: 649 ESKVSQALNKARDEAGTVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVGGKR 708

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+T
Sbjct: 709 IPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 768

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           GY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+  A++E +
Sbjct: 769 GYIQRRLVKALEDVMCKYDGTVRNSLGDIVQFVYGEDGLGGAHIEAQ 815


>gi|432105605|gb|ELK31799.1| DNA-directed RNA polymerase II subunit RPB1 [Myotis davidii]
          Length = 1970

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|329663165|ref|NP_001193242.1| DNA-directed RNA polymerase II subunit RPB1 [Bos taurus]
          Length = 1970

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|120561172|gb|ABM26981.1| RNA polymerase II largest subunit [Nosema trichoplusiae]
          Length = 989

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 317/921 (34%), Positives = 481/921 (52%), Gaps = 109/921 (11%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           ILN   V  +FK+++D D EVL       RPE LI+T + VPP ++RPS++M+G    E+
Sbjct: 97  ILNGEKVHSIFKKISDEDIEVLGFDLAYSRPEWLILTVLLVPPPSVRPSIVMEGMLRAED 156

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  II++N  L++  +E           + LQ  VA  I++D+ G P ++Q + R
Sbjct: 157 DLTHKLSDIIKSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLIDNDISGQPQALQKSGR 216

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL     RLKGK+GR RGNL GKRV+++ R+VI+ D N+ + EV +P+ +A+I T+PE++
Sbjct: 217 PLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEVAKIHTFPEKI 276

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           +  NIEKL + + NGP++YPGA  +   DG    L   F N+  ++L+ G IV+RH+++G
Sbjct: 277 TPFNIEKLEKLVANGPNEYPGANYVIRTDGQRIDL--NF-NRGDIKLEEGYIVERHMQNG 333

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D +LFNRQPSLH+MS+M H+ R+M  +TLR N SV +PYNADFDGDEMN+H+PQ   +  
Sbjct: 334 DTILFNRQPSLHKMSMMGHKVRVMEGKTLRLNLSVTSPYNADFDGDEMNLHMPQNYNSIA 393

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCC------YM 434
           E   +  V   +  P++ + ++   QD LT     T +D F+D+     +        Y 
Sbjct: 394 ELEEICMVPKQILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNEMMQVLYSIDFDKYY 453

Query: 435 GDGMDRVD------------------LPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
             G+D V                   L  PAI KP +LWTGKQ+ S +            
Sbjct: 454 DIGLDSVIKKGKKLDMGAKEYSLMGLLSKPAIQKPKQLWTGKQILSFI------------ 501

Query: 477 LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
                  + N   +   +E    +    +D  V     E++SG + K  +G   + GL  
Sbjct: 502 -------FPNVFYKNSSNESRENDLENVSDTSVVICGGEIMSGIIDKKAVG-ATQGGLVH 553

Query: 537 VLLRDYGAHATSGCMNRLAKLSARWIGN-HGFSIGIDDVQPKKELSDKKGKLISENYEVC 595
           ++  D+G    +  ++ + K+  +++ N H FS+GI D     +      + I ++ +  
Sbjct: 554 IIANDFGCSRVTLFIDDIQKIITKFLMNIHVFSMGIGDTVADSDTLKYVKQAIEKSKDSV 613

Query: 596 NVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCG 655
           +  I++    +L   PG    ++ E+ +  +LN+ R+ +G +   SL   N+   M   G
Sbjct: 614 DEIIRKAQNNRLDRLPGMTMKESFESQVNYVLNKARDVSGTSTQKSLNKCNNMKAMVLSG 673

Query: 656 SKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSA 715
           SKGS INISQ+ ACVGQQ+V GRR P GF  R+LPHFP++     ++GFV NS+ SGLS 
Sbjct: 674 SKGSFINISQVTACVGQQNVEGRRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSP 733

Query: 716 TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGD 775
            EFFFH MGGREGL+DTA+KTA+TGY+ RRL+KA+ED +++ D SVR A G + Q+LYG+
Sbjct: 734 EEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVRLDGSVRGATGNVYQYLYGE 793

Query: 776 DGMDPANMEGKSGEPLNF-----------------------DRLLMKVKATCPPAGQRYL 812
           DG D   +E +  +  NF                       D++    K  C     + +
Sbjct: 794 DGFDATFLEMQRVQTTNFKEAHFIDMFSSDSTYAVKKGAVSDQIY---KLLCSDIELQKI 850

Query: 813 SPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIK-----FVEDIGWDDK 867
              +   +V+    +Y  E  S+  +N L +        L + I      F   +G    
Sbjct: 851 LYDEYDWLVKHVFDSYNPEDESQNVVNRLYRNVLASPCNLQRIIYNAISMFQSPVGDVSP 910

Query: 868 SQILEEVTHKTSGITEKQLEVFIQTCFSRYRV------------------------KRVE 903
             ILE  T +  G T + L V I+T  S   +                         RV 
Sbjct: 911 YFILE--TTRDLGGTNELLNVLIRTHLSVKNILTVYKLDLNGFNWVIEAIKDKVMSSRVA 968

Query: 904 AGTAIGAIGAQSIGEPGTQMT 924
               +G + AQS+GEP TQMT
Sbjct: 969 HNEMVGTLAAQSVGEPATQMT 989


>gi|324120534|dbj|BAJ78658.1| RNA polymerase II largest subunit [Karoophasma biedouwense]
          Length = 1907

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 291/732 (39%), Positives = 431/732 (58%), Gaps = 32/732 (4%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           V  + K +TD +C +L +     RP+ +I+T + VPP+A+RP+V+M GS  N++D+T +L
Sbjct: 215 VWEILKHITDEECFILGMDPKLARPDWMIVTVLPVPPLAVRPAVVMYGSARNQDDLTHKL 274

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II++N  L +      +A   L   + LQ  VA  +++D+ G+P +MQ + +PL    
Sbjct: 275 ADIIKSNNELVRNEQAGAAAHVILENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIK 334

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ +T+PE V+  NI+
Sbjct: 335 ARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNID 394

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           K+++ ++ G  +YPGA+ I   +G  R+          + L+ G  V+RH+ DGD+V+FN
Sbjct: 395 KMQELVRRGNSQYPGAKYIVRDNG-ERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFN 453

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQP+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R E   + 
Sbjct: 454 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 513

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLP 444
                + TP+  + ++   QD LT+   +T++D F ++      LM   + DG     +P
Sbjct: 514 VTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNILMFLPIWDG----KMP 569

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR--IETM 502
            PAILKP  LWTGKQ+FS++I  + NM          +T+S     T  DEE     + +
Sbjct: 570 QPAILKPKPLWTGKQVFSLIIPGNVNMI---------RTHS-----THPDEEDDGPYKWI 615

Query: 503 CPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWI 562
            P D  V   +SEL+ G L K TLG  +   L  + + + G          +  +   W+
Sbjct: 616 SPGDTKVMVEHSELVMGILCKKTLGT-SAGSLLHICMLELGHEVCGQFYGNIQTVVNSWL 674

Query: 563 GNHGFSIGIDDV--QPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
              G SIGI D    P+  L  +K  +     +V  V  K +N  +L+  PG    QT E
Sbjct: 675 LLEGHSIGIGDTIADPQTYLEIQKA-IKKAKEDVIEVIHKAHNM-ELEPTPGNTLRQTFE 732

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
             +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R 
Sbjct: 733 NQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRI 792

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
           P GF  R+LPHF +    P ++GFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA+TG
Sbjct: 793 PFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETG 852

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           Y+ RRLIKA+E + + YD +VRN+ G ++Q  YG+DG+    +E ++   +       + 
Sbjct: 853 YIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEAVEFQNLPTIKLANKSFER 912

Query: 801 KATCPPAGQRYL 812
           K    P  +RYL
Sbjct: 913 KFKFDPTNERYL 924



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 135/421 (32%), Positives = 204/421 (48%), Gaps = 63/421 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R++  +   G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1054 LSSEAFEWLIGEIETRFQQAQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1113

Query: 941  GVPRIKEIINGAKRISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            GVPR+KEIIN +K+   P +T  L      D E A  V+  R+E T L +V  +  I   
Sbjct: 1114 GVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL-CRLEHTTLRKVTANTAIYYD 1172

Query: 998  SRLASIVIA----------------------------LDMETIQDAHL------------ 1017
                + VIA                            LD + + D  L            
Sbjct: 1173 PDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAG 1232

Query: 1018 ------CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NV 1070
                  CI  D   E +V   +I +     K  D  +      VDK +    L  ++ N+
Sbjct: 1233 FGDDLNCIFNDDNAEKLVLRIRI-MNSDDNKFQDEEET-----VDKMEDDMFLRCIEANM 1286

Query: 1071 LPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGI 1124
            L  + ++GI+ + +V +   + + +K   V E GE K   ++ L  +GT +  V+    +
Sbjct: 1287 LSDMTLQGIEAIGKVYMHLPQTDSKKRIVVTETGEFKAIAEWLLETDGTSMMKVLSERDV 1346

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
            D  +T SN I E+   LGIEA R  +  E+N  ++ +G+ ++ RH+ LL D+MT +G ++
Sbjct: 1347 DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1406

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
             ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    LGTG   
Sbjct: 1407 AITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFD 1466

Query: 1245 I 1245
            +
Sbjct: 1467 L 1467


>gi|395533542|ref|XP_003768816.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sarcophilus
           harrisii]
          Length = 1921

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 291/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS+++  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDTTRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|448711917|ref|ZP_21701460.1| DNA-directed RNA polymerase subunit A' [Halobiforma nitratireducens
           JCM 10879]
 gi|445791002|gb|EMA41651.1| DNA-directed RNA polymerase subunit A' [Halobiforma nitratireducens
           JCM 10879]
          Length = 975

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 283/720 (39%), Positives = 407/720 (56%), Gaps = 45/720 (6%)

Query: 83  TYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSN 139
           T  L P ++   F+ + D D EVL +     RPE +I+T + VPP+  RPS+ +D  Q +
Sbjct: 242 TNKLMPSDIRDWFEAIPDEDIEVLGIDPDRSRPEWMILTVLPVPPVTARPSITLDNGQRS 301

Query: 140 ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQV 198
           E+D+T +L  II+ N    +              WE LQ  V  ++++++ G P +  + 
Sbjct: 302 EDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRS 361

Query: 199 ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RPL    QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+A+ +T   
Sbjct: 362 GRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVAKEMTQTM 421

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            V++ N+EK R+ + NGP+ +PGA  +R PDG    +  K   QLA ++K G  V+RHL 
Sbjct: 422 NVTERNVEKARRFVSNGPEGHPGANYVRRPDGRRLKVTEKNCEQLAEKVKPGWEVNRHLI 481

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD+V+FNRQPSLHRMSIM H   +MP++T R N  VC PYNADFDGDEMNMH  Q EEA
Sbjct: 482 DGDIVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEA 541

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDT-FYDRAAFSLMCCYMGDG 437
           R EA +LM VQ  + +P+ GE ++ + QD ++ +FL+T  +  F +  A  L+       
Sbjct: 542 RAEARVLMRVQEQILSPRFGENIIGAIQDHISGTFLLTHNNPRFNETQALDLLRAT---- 597

Query: 438 MDRVD-LPTPAIL--KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
             R+D LP P+ +  +    WTG  +FS L+    N+      TV EK            
Sbjct: 598 --RIDELPEPSGVDDQGEPFWTGYDVFSELLPDDLNLEF--TGTVGEK------------ 641

Query: 495 EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                         V   + +LI G + +  +G    + +   + + +G       +N +
Sbjct: 642 --------------VAIEDGQLIEGTIAEDEVGEFGGE-IVDTITKIHGKTRARVFINEV 686

Query: 555 AKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
           A L+ R I + GFSIGIDD    +E   +  + I + Y+     I+ Y  G+L+  PG  
Sbjct: 687 ASLAMRSIMHFGFSIGIDDETIPEEAQARIDETIDDAYDRVEELIEAYERGELESLPGRT 746

Query: 615 AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
             +TLE  I   L+R R++AG          N  ++M++ G++GS +N++QM  CVGQQ+
Sbjct: 747 VDETLEMKIMQTLSRARDNAGNIADEHFTEENPAVVMAESGARGSMLNLTQMAGCVGQQA 806

Query: 675 VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
           V G R   G+ +R+L H+        A GFV NS+ SGL+  EFFFH MGGREGLVDTAV
Sbjct: 807 VRGERINRGYENRTLSHYKENDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLVDTAV 866

Query: 735 KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFD 794
           +T+ +GY+ RRLI AL +L  QYD +VR+    IVQF +G+DG  P  +   SGE    D
Sbjct: 867 RTSKSGYLQRRLINALSELETQYDGTVRDTSDTIVQFEFGEDGTSPVKV--SSGEDNEID 924


>gi|391335740|ref|XP_003742247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
           [Metaseiulus occidentalis]
          Length = 1842

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 283/710 (39%), Positives = 427/710 (60%), Gaps = 28/710 (3%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L    V  +FK +++ +C  L + ER   P+ +++T +AVPP+ +RP+V+M GS  N++
Sbjct: 208 VLTAERVYEIFKHISEEECFCLGMDERYAKPDWMVLTVLAVPPLCVRPAVVMFGSARNQD 267

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  + +      +        + LQ  VA   ++++ G+P +MQ + R
Sbjct: 268 DLTHKLSDIVKANNEIIRNEQSGAAPHILTENVKMLQFHVATLYDNELPGLPRAMQKSGR 327

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLK K+GR RGNL GKRV+++ RTVI+PDPNLKI EV +P  +A+ LT+PE V
Sbjct: 328 PLKSLKQRLKAKEGRIRGNLMGKRVDFSARTVITPDPNLKIDEVGVPRSIAQNLTFPEIV 387

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NIE +++ +  G ++YPGA+ I   +G    L  +F  + + + L+ G  V+RH+++
Sbjct: 388 TPFNIEWMQELVSRGNNQYPGAKYIVRDNGERIDL--RFHPKASDLHLQCGYKVERHVQN 445

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+++FNRQP+LH+MS+M H+ R++PW T R N SV  PYNADFDGDEMNMHVPQ+ E R
Sbjct: 446 GDIIVFNRQPTLHKMSMMGHKIRVLPWSTFRMNLSVTTPYNADFDGDEMNMHVPQSLETR 505

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP+  + ++   QD LT+   +T++D + ++     +  ++     
Sbjct: 506 AEIEQLAMVPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVYLEKDQMMNLLMFLPIWNG 565

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR- 498
           +V  P PAILKP  LWT KQLFS++I  + N+          +T+S     T  DEE   
Sbjct: 566 KV--PIPAILKPKPLWTAKQLFSLIIPGNVNLI---------RTHS-----THPDEEDDG 609

Query: 499 -IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
             + + P D  V   + +L+SG + K T+G  +   L  VL  + G        + L  +
Sbjct: 610 PYKWISPGDTKVIIEHGQLLSGIVCKKTVG-ASAGSLMHVLFVEMGHRVAGAFYSHLQTV 668

Query: 558 SARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
              W+   G SIGI D +  ++   D +  +     +V  V  K +N+ +L+  PG    
Sbjct: 669 VNAWLLYEGHSIGIGDTIADQQTYMDIQNTIKKAKQDVIEVIEKAHND-ELEPTPGNTLR 727

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           QT E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++ACVGQQ+V 
Sbjct: 728 QTFENQVNRILNDARDKTGGSAQKSLSEFNNFKSMVVSGAKGSKINISQVIACVGQQNVE 787

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ +EFFFH MGGREGL+DTAVKT
Sbjct: 788 GKRIPFGFRKRTLPHFIKDDFGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 847

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           A+TGY+ RRLIKA+E + I YD +VRN+ G ++QF YG+DG+D   +E +
Sbjct: 848 AETGYIQRRLIKAMESVMICYDGTVRNSNGQVIQFRYGEDGLDGCCVESQ 897



 Score =  116 bits (290), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 104/183 (56%), Gaps = 6/183 (3%)

Query: 1069 NVLPMVIVKGIKTVERVVI---AEKEKEKRKVKENGEKK---KYRLLVEGTGLQAVMGAE 1122
            N+L  + ++GI+ + +V +      +K++  V E GE K   ++ L  +GT L  V+   
Sbjct: 1285 NMLSDMTLQGIEAISKVYMHLPTTDDKKRIVVTETGEFKAISEWLLETDGTSLMRVLSER 1344

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
             +D  +T SN I EV   LGIEA R  +  E+N  +   G  ++ RH+ LL D+MT +G 
Sbjct: 1345 DVDPVRTYSNDIIEVFSVLGIEAVRKAVEKEMNHVISFDGSYVNYRHLALLCDVMTAKGH 1404

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            ++ ITR GI + D   LM  SFE+T D L +A+ +   D+++GVSE II+G    +GTG 
Sbjct: 1405 LMAITRHGINRQDTGALMRCSFEETVDILMDAAFHAEADKLKGVSENIILGKLARMGTGA 1464

Query: 1243 LKI 1245
              +
Sbjct: 1465 FDL 1467



 Score = 90.5 bits (223), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 2/120 (1%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+   +   G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN +K+
Sbjct: 1067 ARFHQSQGHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKQ 1126

Query: 955  ISTPIITAELECNDNENA--ARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L+     +A  A+ V  R+E T L +V  +  I       + VIA D + +
Sbjct: 1127 PKTPSLTVFLKGASARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQDFV 1186


>gi|325960115|ref|YP_004291581.1| DNA-directed RNA polymerase subunit A' [Methanobacterium sp. AL-21]
 gi|325331547|gb|ADZ10609.1| DNA-directed RNA polymerase subunit A' [Methanobacterium sp. AL-21]
          Length = 871

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 295/803 (36%), Positives = 451/803 (56%), Gaps = 59/803 (7%)

Query: 5   KMEALRKTD-LMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQ 63
           K+E L K +  +  I+K+   +A +  KCP CG     VK    V  I+    K+T S  
Sbjct: 119 KIETLIKNEESITGIIKEIYAVARRD-KCPSCGEEQEDVKIDKPV-SIVEGNYKLTAS-- 174

Query: 64  EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVP 123
                    +E   A+    YI   +N                +   +PE +++T + VP
Sbjct: 175 -------EVRERLEAIPQDDYIYIGIN----------------HEVAKPEWMVLTVLPVP 211

Query: 124 PIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQ 183
           P+ +RPS+ ++  + +E+D+T +L  I++ N  L++ +            WE LQ  V  
Sbjct: 212 PVTVRPSITLETGERSEDDLTHKLVDILRINQRLKENMEAGAPQLIVEDLWELLQYHVTT 271

Query: 184 YINSDVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKIT 242
           Y +++  GVP +  +  RPL    QRLKGK+GRFR NLSGKRV ++ RTVISPDPN+ I 
Sbjct: 272 YFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVISPDPNISIN 331

Query: 243 EVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQ 302
           EV +P  +A  +T P  V++ NIEK+++ I NGP K+PGA  +  PD     +Y + +  
Sbjct: 332 EVGVPEMIATEVTVPVFVTEWNIEKMKEYIMNGPKKHPGANYVIRPDDRKIRVYDETKET 391

Query: 303 LAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNAD 362
           +  +L+ G +V+RHL DGDVVLFNRQPSLHRMS+M H  +++P++T R N  VC PYNAD
Sbjct: 392 VIEKLEPGFVVERHLMDGDVVLFNRQPSLHRMSMMAHEVKVLPYKTFRLNLCVCPPYNAD 451

Query: 363 FDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDT-F 421
           FDGDEMNMHV QTEE+R EA  LM VQ ++ +P+ G  ++    D ++ ++L+TR+ + F
Sbjct: 452 FDGDEMNMHVFQTEESRAEAKSLMRVQEHILSPRFGGPIIGGIHDHISGAYLLTREGSNF 511

Query: 422 YDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKE 481
            +   F ++         R++LP        + WTGKQ+FS+L+    NM          
Sbjct: 512 SEEDVFQMV------KRARMELPKAT----GKDWTGKQVFSLLLPNDLNM---------- 551

Query: 482 KTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRD 541
             Y  ++ R + DE +++E  C ND +V   + ++ SG + +   G  +   L S+ +++
Sbjct: 552 -VYRAEICR-KCDECLKLE--CKNDAYVVIEDGQIKSGAMDEKAYGAFSGKILDSI-VKE 606

Query: 542 YGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKE 601
           YG       ++   KL+   I   GF+    D +  KE  D+  +L++   +     I  
Sbjct: 607 YGTDKAREFLDTSTKLAIAGIMKRGFTTSTADEEIPKEAKDRIEQLLANAEQRVEQLIDA 666

Query: 602 YNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPI 661
           Y+  +L+  PG    +TLE  I  +L   R+ +G+         N  +IM+  G++GS +
Sbjct: 667 YHNEELEALPGRSLRETLEMKIMQVLGEARDKSGEIAESYFGMENHAVIMALTGARGSML 726

Query: 662 NISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFH 721
           N++Q+ ACVGQQSV G R   G+  R+LPHF        A GFV +S+  GL   EFFFH
Sbjct: 727 NLTQIAACVGQQSVRGGRIERGYSKRTLPHFYVGEMGAKASGFVHSSYKKGLDPLEFFFH 786

Query: 722 TMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPA 781
            MGGREGLVDTA++TA +GYM RRL+ AL+DL++Q D +VR+  G I+Q  YG+DG+DPA
Sbjct: 787 AMGGREGLVDTAIRTAQSGYMQRRLVNALQDLNVQLDGTVRDNRGVIIQTQYGEDGIDPA 846

Query: 782 NMEGKSGEPLNFDRLL--MKVKA 802
             +   G+  + DR++  M++K+
Sbjct: 847 KSD--YGKVADIDRMIEEMRIKS 867


>gi|219127092|ref|XP_002183777.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405014|gb|EEC44959.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1706

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 289/714 (40%), Positives = 425/714 (59%), Gaps = 27/714 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITER 146
           V+ +FK++ + D  +L L     RP+ L++  + VPP+ +RPSV + G +QS+E+D+T +
Sbjct: 142 VVKIFKQIREEDIVLLGLDVQHARPDWLLVQVLPVPPLHVRPSVTVGGGTQSSEDDLTHQ 201

Query: 147 LKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVP-FSMQVARPLSGF 205
           L  +I++N SLQQ +               LQ  VA ++++++RG+P  + +  RPL   
Sbjct: 202 LVNVIKSNLSLQQAVSNGEPQIVVEQFELALQHNVAAFMDNELRGMPQVTQRSGRPLKTI 261

Query: 206 VQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNI 265
            QRLKGK+GR RGNL GKRV+++ RTVI+ DPNL I +V +P  +A  LT P RV+  N 
Sbjct: 262 TQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLGIHQVGVPRSVAMNLTVPIRVTAFNQ 321

Query: 266 EKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLF 325
            +L   + NGP  +PGA+ I   DGT R+     +N+  + L  G IV+RHL D D+VLF
Sbjct: 322 AELSALVANGPTMHPGAKHIIRSDGT-RIDLRYVKNKSELLLAHGWIVERHLRDDDIVLF 380

Query: 326 NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
           NRQPSLH+MSIM H+A+++ W T R N S  +PYNADFDGDEMN+HVPQ   AR EA L+
Sbjct: 381 NRQPSLHKMSIMGHKAKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQGLAARAEAELM 440

Query: 386 MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPT 445
           M     + + ++   +++  QD L ++  +T++  F ++     M  ++     ++  P 
Sbjct: 441 MLSSRVIVSGQSNRPVMSIVQDSLLATQKMTKRSVFIEKDLCYNMLMWVPQWNGQI--PI 498

Query: 446 PAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 505
           PA++KP ELWTGKQL S ++         VNL  K      K  R +        T    
Sbjct: 499 PAVIKPKELWTGKQLLSTILP-------KVNLKSKANNGPGKDARGKN----MPNTFNMY 547

Query: 506 DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
           D  V  ++ EL+ G + K T+G+ +  GL      D G   T+  MN++ +L   WI  +
Sbjct: 548 DHLVTIQDGELLEGTVDKKTIGS-SMGGLIHTAWLDVGFEETARFMNQIQQLVNHWILQY 606

Query: 566 GFSIG-IDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
            FSIG ID V     +   +  +     +V ++ +++   G+L+++PG    ++ E ++ 
Sbjct: 607 SFSIGAIDAVADADTMRQIESTIDKAKRQVQDL-VRQGQLGELEIQPGRTMIESFEQLVN 665

Query: 625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
            +LN  R+ AGK+   SL   NS   M   GSKGS INISQ++ACVGQQ+V G+R P GF
Sbjct: 666 KVLNTARDHAGKSAQSSLDETNSVKAMVTAGSKGSFINISQIIACVGQQNVEGKRIPYGF 725

Query: 685 IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
             R+LPHF +      ++GFV NS+  GLS  EFFFH MGGREGL+DTA KTA+TGY+ R
Sbjct: 726 KKRTLPHFSKDDIGSESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTACKTAETGYIQR 785

Query: 745 RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
           RL+KA+E +  +YD ++R + G IVQFLYG+DGMD   +E +     NFD L +
Sbjct: 786 RLVKAMETVMARYDGTLRTSSGQIVQFLYGEDGMDAVWIEKQ-----NFDSLTL 834



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 103/176 (58%), Gaps = 2/176 (1%)

Query: 1068 KNVLPMVIVKGIKTVERVVI--AEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGID 1125
            K++L  + ++G+  V++V +    K      VK  G + ++ L  +GT L AV+G + +D
Sbjct: 1235 KSMLSSLKLRGVDHVKKVFMRGGAKRTVWDDVKGFGVRDEWVLETDGTNLMAVLGVDYVD 1294

Query: 1126 GCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLG 1185
            G ++ SN I EV   LGIE  R  ++ E+   +   G  ++ RH+  L D+MT +G ++ 
Sbjct: 1295 GTRSVSNDIVEVFVALGIEGVRGALLSELRNVISFDGSYVNYRHLACLVDVMTMQGHLMA 1354

Query: 1186 ITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            I R GI ++D   L+ ASFE+T D L +A+V   ++ ++GV+E I+MG    +GTG
Sbjct: 1355 IDRHGINRVDTGPLLRASFEETVDMLMDAAVYAEEEILKGVTENIMMGQLARVGTG 1410



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 75/124 (60%), Gaps = 2/124 (1%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+ +  V  G   G + AQSIGEP TQMTL TFH+AGV++ N+T GVPR+KEIIN AK 
Sbjct: 1008 TRFNIAMVNPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKT 1067

Query: 955  ISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L  E + +E  A  V   +E T+LG V K  +I     + + V+  D E +
Sbjct: 1068 PKTPGLTIYLQEEVSGDEKVAEQVVAMLEFTVLGDVVKKTEIYYDPDVKNTVVTKDREFV 1127

Query: 1013 QDAH 1016
            ++ +
Sbjct: 1128 KEFY 1131


>gi|256082852|ref|XP_002577666.1| DNA-directed RNA polymerase II largest subunit [Schistosoma
           mansoni]
          Length = 1785

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/700 (40%), Positives = 417/700 (59%), Gaps = 25/700 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL +FKRM+D DC  L    R   P+ +I T + VPP+ +RP+V+M G+  N++D+T +L
Sbjct: 112 VLEVFKRMSDEDCLSLGFDPRYARPDWMIATVLPVPPLCVRPAVVMYGATRNQDDLTHKL 171

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+ N  L+++     +A       + LQ  V   ++++V G+P ++Q + RPL    
Sbjct: 172 ADIIKANNQLRRDEQNGAAAHIIAEDIKMLQFHVTTMVDNEVPGLPKAIQKSGRPLKSIK 231

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
           QRLKGK GR RGNL GKRV+++ RTVI+ DPNL + +V +P  +A+ LTYPE V+  NI+
Sbjct: 232 QRLKGKAGRIRGNLMGKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPEIVTQFNID 291

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLEDGDVVLF 325
            L++ +QNG   YPGA+ I   +G    L  ++  +++ + L+ G IV+RH+ + D V+F
Sbjct: 292 HLQKLVQNG-TLYPGAKFIVRENGDRIDL--RYHPKVSDLTLQVGYIVERHMLNDDFVIF 348

Query: 326 NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
           NRQP+LH+MS+MCHR +++PW T R N SV +PYNADFDGDEMN+H+PQ+ E + E   L
Sbjct: 349 NRQPTLHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQL 408

Query: 386 MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPT 445
             V   + TP+  + ++   QD LT+   +T++D F +R+    +  Y+     R  +P 
Sbjct: 409 ARVSRLVITPQANKPVMGIVQDTLTAVNKMTQRDVFLNRSEMMNLLMYLPTWNGR--MPK 466

Query: 446 PAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
           PAI KP  LWTGKQLFS++I    N +R +     +E     K I              P
Sbjct: 467 PAIYKPQRLWTGKQLFSLVIPGRVNCIRTHSTHPEEEDIGPYKWI-------------SP 513

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  V   + +LISG L K TLG+G    ++ V L ++     +   N +  +   W+  
Sbjct: 514 GDTKVIVDDGDLISGILCKKTLGSGAGSLIHIVAL-EHHHDQVNMFFNNIQTVVNNWLLI 572

Query: 565 HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
            G +IGI D    +    +    I++  +     I + +   LQ  PG    QT E  + 
Sbjct: 573 EGHTIGIADTLYDQATRRQISGTITKAKDAVFEIIDQAHNYDLQPTPGNTLRQTFENSVN 632

Query: 625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
            ILN  R+  G     SL   N+  IM   GSKGS INISQ++ACVGQQ+V G+R P GF
Sbjct: 633 KILNDARDKTGSCAQRSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQNVEGKRIPFGF 692

Query: 685 IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
             R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA+TGY+ R
Sbjct: 693 RHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 752

Query: 745 RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           RLIKA+E + I+YD +VRN    ++Q  YG+DG+D  ++E
Sbjct: 753 RLIKAMESVMIKYDGTVRNQINQLIQLRYGEDGLDATHVE 792



 Score =  172 bits (436), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 146/519 (28%), Positives = 239/519 (46%), Gaps = 88/519 (16%)

Query: 790  PLNFDRLLMKVKAT--CPPAGQRYLSPQQVSEIVE---KQLAA------YGKESCSEA-- 836
            P N +RL+M  +      P  +  + P+QV E+V    K+L          KE+ + A  
Sbjct: 870  PCNINRLVMNAQKIFEIDPLSKTNIHPRQVVEMVRETCKRLIVVPGDDRLSKEANANATL 929

Query: 837  FLNSL-RKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFS 895
             L+SL R     ++  +D ++ + E + W     +L EV                    +
Sbjct: 930  LLSSLIRASLCAKKVIIDYRLSY-EALDW-----VLGEVR-------------------A 964

Query: 896  RYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRI 955
            R++   +  G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN +KR 
Sbjct: 965  RFQQAHIHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRP 1024

Query: 956  STPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
             TP +T  L      +A R   V  R+E T L ++  S  I       +  +  D E + 
Sbjct: 1025 KTPSMTIFLTGQAARDAERTKDVVARLEHTTLRKLVNSTYIYYDPDPQNTAVEEDREWVS 1084

Query: 1014 DAHLCINADIVKES-----------------------------------IVQTPKIKLKQ 1038
              +   + D+   S                                   I   P   LK 
Sbjct: 1085 TYYELPDFDVNAISSWMLRIEFTRKGMTGKKLSMEQIADKITRAFGNDLICHIPDDNLKL 1144

Query: 1039 -QHIKVLDFRKLEIFPPVDKSKIHFELYSL-----KNVLPMVIVKGIKTVERVVIA-EKE 1091
               I++++    + F   D +    E  +       N+L  + ++GI  + +V +   K 
Sbjct: 1145 VMRIRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKT 1204

Query: 1092 KEKRKV--KENGE---KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAA 1146
            ++K++V  K++G      ++ L  +GT L  V+    +D  +T SN I E+ + LGIEA 
Sbjct: 1205 QDKKRVVIKDDGSFDTVAEWMLETDGTCLMRVLAERDVDPVRTVSNDIVEIFEALGIEAV 1264

Query: 1147 RICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEK 1206
            R  I  E++  +   G  ++ RH+ LL D+MT +G ++ ITR G+ ++D   L   SFE+
Sbjct: 1265 RKAIECEMHHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARCSFEE 1324

Query: 1207 TADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            T D L  A+++   D + GVSE I++G    +GTG   +
Sbjct: 1325 TVDILMEAAIHSECDPMAGVSETIMLGQLARIGTGCFDL 1363


>gi|298674727|ref|YP_003726477.1| DNA-directed RNA polymerase subunit A' [Methanohalobium evestigatum
           Z-7303]
 gi|298287715|gb|ADI73681.1| DNA-directed RNA polymerase subunit A' [Methanohalobium evestigatum
           Z-7303]
          Length = 881

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/706 (39%), Positives = 405/706 (57%), Gaps = 37/706 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  +   F+ M+D D  ++ +   + RPE +I+T + VPP+ +RPS+ ++  Q +E+D
Sbjct: 175 LTPTEIRERFENMSDDDVRLMGMDPSNARPEWMILTVLPVPPVTVRPSITLESGQRSEDD 234

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T ++  II+ N   Q+              WE LQ  V  + +++V GVP +  +  RP
Sbjct: 235 LTHKMVDIIRINQRFQENREAGAPQLILEDLWELLQYHVTTFFDNEVSGVPPARHRSGRP 294

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDPNL I EV +P  +A+ +T P  V 
Sbjct: 295 LKTLTQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSINEVGLPYAIAKQMTIPVNVI 354

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
             N+EK+RQ +  G D +PGA  +   DG    +       LA +L  G +V+R L+DGD
Sbjct: 355 SRNLEKMRQYVARGNDVHPGANYVIRADGRRIKVTDVNCTDLAEKLDIGWVVERQLQDGD 414

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +V+FNRQPSLH+MSIM H  +++P++T R N +VC PYNADFDGDEMN+HV QTEEAR E
Sbjct: 415 IVIFNRQPSLHKMSIMAHHVKVLPYKTFRLNPAVCPPYNADFDGDEMNLHVLQTEEARAE 474

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
           A +LM +Q N+ +P+ G  ++    D ++  FL+TR D    +           D +D +
Sbjct: 475 AEILMKIQENILSPRFGGPIIGGIHDHISGMFLLTRTDNDISK----------NDALDLL 524

Query: 442 ------DLPTPAILKP--VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
                  LP PA  +      WTGKQ+FS L+    N+  YV     +    N+      
Sbjct: 525 RKSHIRQLPEPAGYRDDGEPYWTGKQIFSQLLPDDLNLE-YVAEVCSKCDECNR------ 577

Query: 494 DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
                    C ND +V   N ELI+G + +  +G   K  +   ++++YG+  ++  ++ 
Sbjct: 578 -------ENCENDAYVIIENGELITGTIDEKGIG-AFKGHIVDKIVKEYGSTKSAEFIDD 629

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
           + +L+ R I   G S GI D    KE      ++IS   +     I+ Y   +L+  PG 
Sbjct: 630 MTRLAIRAIMRSGLSFGISDEDIPKEAQMHISEIISNAEDEVKRLIEAYEARELEPLPGR 689

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              +T+E  I   L   R+  G      L   NS +IM++ G++GS +N++QM A VGQQ
Sbjct: 690 TLDETIEMKIMQKLGVARDKTGDVAGNHLGLDNSAVIMAKSGARGSMLNLTQMAASVGQQ 749

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
           +V G R   G+  R+LPHF +      A GFV +S+ SGL+ TE+FFH +GGREGLVDTA
Sbjct: 750 AVRGERIRRGYTGRTLPHFSKGDLGADAHGFVKSSYKSGLNPTEYFFHAVGGREGLVDTA 809

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           V+T+ +GY+ RRL+ AL+DL +QYD SVR   G IVQF YG+DG+D
Sbjct: 810 VRTSQSGYLQRRLVNALQDLEVQYDGSVRETRGVIVQFKYGEDGID 855


>gi|395748505|ref|XP_002827010.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
           subunit RPB1 [Pongo abelii]
          Length = 1967

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|397135852|gb|AFO11421.1| RNA polymerase I, partial [Hanseniaspora valbyensis]
          Length = 871

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 288/712 (40%), Positives = 426/712 (59%), Gaps = 41/712 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           ++P  VL +F+ ++  DC  L   E   RPE +++T + VPP  +RPSV  + SQ  E+D
Sbjct: 15  ISPEEVLNIFRHISVEDCWRLGFDEDYSRPEWMLLTVLPVPPPCVRPSVAFNESQRGEDD 74

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RP 201
           +T +L  I++ N ++Q+  +E           + LQ  VA Y+++D+ G P ++Q + RP
Sbjct: 75  LTYKLGDILKANINVQKLEIEGAPQHVIHDFEKLLQYHVATYMDNDIAGQPQALQKSGRP 134

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLKGK+GR R NL GKRV+++ RTVIS DPNL++ +V +P+ +A+ LTYPE V+
Sbjct: 135 VKSIRARLKGKEGRIRSNLMGKRVDFSARTVISGDPNLELDQVGVPLSIAKTLTYPEIVT 194

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
            +NI++L Q ++NGP+++PGA+ +   +GT   L Y K    L  +L+ G  V+RH+ D 
Sbjct: 195 PYNIDRLTQLVKNGPNQHPGAKYVIRDNGTRIDLRYNKRAGDL--QLQYGWKVERHIVDE 252

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE + 
Sbjct: 253 DPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETKA 312

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           E   L  V   + +P++ +  +   QD L     +T ++ F D      M  ++ D    
Sbjct: 313 ELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRNNFIDYEQVLNMLYWIPDWDGN 372

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           V    PAI+KP  LWTGKQL S  I    +++ + + T                      
Sbjct: 373 VP--PPAIIKPKPLWTGKQLLSAAIPKGIHLQRFDDGTT--------------------- 409

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
            + P D  +   + E+I G + K T+G+ +  GL  V+ ++ G +  +   + + K+   
Sbjct: 410 MLSPKDNGILVVDGEIIFGVVDKKTVGS-SAGGLIHVVTKEKGPYVCAKLFSNIQKVVNY 468

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKL-ISENYEVCNVKI----KEYNEGKLQLKPGCDA 615
           W  ++GFSIGI D      ++D+K  L I+E   +  VK+    KE  E  L  K G   
Sbjct: 469 WFLHNGFSIGIGDT-----IADEKTMLEITEAIAIAKVKVEEVTKEAQENLLSAKHGMTL 523

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            ++ E  +   LN  R+ AG++   +L   N+   M   GSKGS INI+QM ACVGQQSV
Sbjct: 524 RESFEDNVVRFLNEARDKAGRSAEVNLKSLNNVKQMVSSGSKGSFINIAQMSACVGQQSV 583

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R P GF DR+LPHF +    P +KGFV NS+  GL+  EFFFH MGGREGL+DTAVK
Sbjct: 584 EGKRIPFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 643

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           TA+TGY+ RRL+KALED+ + YD + RN+ G ++QF+YG+DG+D  ++E +S
Sbjct: 644 TAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGLDAGHVEKQS 695


>gi|301778185|ref|XP_002924473.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
           [Ailuropoda melanoleuca]
          Length = 1970

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 290/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PA+LKP  LWTGKQ+FS+++  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAVLKPRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDVTRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|405120884|gb|AFR95654.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus
           neoformans var. grubii H99]
          Length = 1786

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/710 (41%), Positives = 417/710 (58%), Gaps = 35/710 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNEN 141
           ++P  V  + K++T  D  ++ L+    RP+ +I+T + VPP A+RPS+ +DG +  +E+
Sbjct: 217 VSPGEVYNILKKITPEDLHIMGLNADYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSED 276

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAG--WETLQVEVAQYINSDVRGVPFSMQVA 199
           D+T +L +II+ N  +++  +EA     S+    ++ LQ  V  Y+++D+ G+P   Q  
Sbjct: 277 DLTYKLSQIIKFNGVVRR--MEAEGVPPSVVNEQFDLLQYHVCTYMDNDIAGLPRDQQKG 334

Query: 200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            R +     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ +V +P  +A  LTYPE
Sbjct: 335 GRAIKAIRARLKGKEGRMRGNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPE 394

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQ-LAVELKSGCIVDRHL 317
           RV+ +NI  L+  + NGP  YPGAR   Y   T   +  K+R     + L+ G IV+RHL
Sbjct: 395 RVTPYNIVYLQTLVNNGPATYPGARY--YVKDTGERVDLKYRKSGEPISLQFGWIVERHL 452

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
           +DGD VLFNRQPSLH+MS+M HR ++M + T R N SV +PYNADFDGDEMN+HVPQ+EE
Sbjct: 453 KDGDYVLFNRQPSLHKMSMMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEE 512

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
            R E   +  V   + +P+  + ++   QD L      T +D F D      +  ++ + 
Sbjct: 513 TRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHILLWLPEW 572

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
              +  P PAI KP  +WTGKQL S+ I P       +N+T K     + +  T  DE +
Sbjct: 573 NGTI--PPPAIFKPKPMWTGKQLLSMTI-PKG-----INITYKNNEKPSPIDVT--DENV 622

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
            IE            N EL+ G + K   G+ N +GL  V+ R+ G  A     + + ++
Sbjct: 623 LIE------------NGELVHGTIVKNMAGSAN-NGLVHVIFRELGHIAARDFFSAVQRV 669

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
              W+ ++GFS+GI D    K         + E  E     I+E    +++ KPG    +
Sbjct: 670 VNYWLLHYGFSVGIGDTIVDKATMAGITNRMVEAKEAVQKLIQEAEANRMKPKPGMTIRE 729

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           TLEA I   LN+ R+  GK    +L   N+   M   G+KGS INISQM   VGQQ V G
Sbjct: 730 TLEASIAAELNKARDWTGKTTQDNLKADNNVKQMVVSGAKGSFINISQMSGVVGQQFVEG 789

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R   GF  RSLPHF R    P ++GFV NS+  GL+  EF+FH MGGREGL+DTAVKTA
Sbjct: 790 KRISFGFRHRSLPHFSRDDYGPESRGFVENSYLRGLTPQEFWFHAMGGREGLIDTAVKTA 849

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           +TGY+ RRL+KA+EDL + YD +VRN+   +VQFLYG+DGMD A ME +S
Sbjct: 850 ETGYIQRRLVKAMEDLKVAYDGTVRNSVNEVVQFLYGEDGMDGAAMEKQS 899



 Score =  187 bits (476), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/386 (32%), Positives = 200/386 (51%), Gaps = 45/386 (11%)

Query: 902  VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIIT 961
            V A   +G + AQSIGEP TQMTL TFH+AGVAS ++T GVPR+KEIIN A  I TP + 
Sbjct: 1074 VNAAEMVGTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPRLKEIINVAVNIRTPALN 1133

Query: 962  AEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCI 1019
              L  E +  E  A  +  ++  T L  +  +++I    +L S  I  D + + DA   I
Sbjct: 1134 VYLDPEYSKTEEDAHQIMRKLTYTRLRDITATVEIFYDPKLDSTDIEEDKDFV-DAFFAI 1192

Query: 1020 NADIVKESIVQTPKIKLKQQHIKVLD--FRKLEIFPPVDKS--KIHFELYSLKNVLPMVI 1075
              + ++  +     ++L+    KVL+  +   +I   +  +  K  F ++S  N   +VI
Sbjct: 1193 PDEDIRLELHSPWLLRLELDRAKVLEGGYEMSQIVDAIADTVGKDVFVIHSEDNAPKLVI 1252

Query: 1076 ---------------------------------VKGIKTVERVVIAEKEKEKRKVKENGE 1102
                                             + GI  + RV I+E ++    V +NGE
Sbjct: 1253 RIRVVAEKEDEELLGDEDMFLKRIEGTLLDQVELGGITGITRVFISEGKQ--VVVSQNGE 1310

Query: 1103 ---KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMK 1159
               +K++ L  +G  L+AVM  +G++  +T SN+ +EV +TLGIEAAR  +  E+N  ++
Sbjct: 1311 YDQEKEWFLETDGINLKAVMAVDGVNAFRTYSNNCYEVYETLGIEAARNALYKELNGVIE 1370

Query: 1160 AHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGR 1219
              G  ++ RH+ LL DLM  +G ++ ITR GI + D   L  A+FE+T + L  A+  G 
Sbjct: 1371 MGGSYVNYRHLALLCDLMCSKGALMSITRHGINRTDAGALSRAAFEETVEILLEAAAVGD 1430

Query: 1220 DDRIEGVSECIIMGIPMPLGTGILKI 1245
             D  +GV+E +++G   P+GTG   +
Sbjct: 1431 VDDCKGVAENVLLGQMAPMGTGAFDV 1456


>gi|397135977|gb|AFO11483.1| RNA polymerase I, partial [Schizosaccharomyces pombe]
          Length = 868

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/721 (39%), Positives = 425/721 (58%), Gaps = 34/721 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           I++   +L +FK ++  D   L  +E   RPE +I+T + VPP  +RPS+  + SQ  E+
Sbjct: 14  IISAEEILNVFKHISPEDGWRLGFNEDFSRPEWMILTVLPVPPPPVRPSISFNESQRGED 73

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N ++Q+  +  +           LQ  VA Y+++D+ G       + R
Sbjct: 74  DLTYKLGDILKANINVQKLEINGSPQHVIQESESLLQFHVATYMDNDIAGXXXXXXXSGR 133

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + E+ +P  +A+ LTYPE V
Sbjct: 134 PLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETV 193

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           + +NI +L++ ++NGPD++PGA+ I   D   R+     +    + L+ G  V+RH+ DG
Sbjct: 194 TPYNIYQLQELVRNGPDEHPGAKYI-IRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDG 252

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           DVV+FNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMNMHVPQ+EE R 
Sbjct: 253 DVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRA 312

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           E   +  V   + +P++ + ++   QD L      + +D F  R A   +  ++ D  D 
Sbjct: 313 EIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLWVPD-WDG 371

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           + LP P ILKP  LWTGKQ+ S++I    N                 LIR +  + +   
Sbjct: 372 I-LPPPVILKPKVLWTGKQILSLIIPKGIN-----------------LIRDDDKQSLS-- 411

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
              P D  +   N E+I G + K T+G  ++ GL   + ++ G     G  N + ++   
Sbjct: 412 --NPTDSGMLIENGEIIYGVVDKKTVG-ASQGGLVHTIWKEKGPEICKGFFNGIQRVVNY 468

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           W+ ++GFSIGI D     +   +  + + E        I++    +L+ +PG    ++ E
Sbjct: 469 WLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFE 528

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
           A ++ ILN+ R++AG++   SL   N+   M   GSKGS INISQM ACVGQQ V G+R 
Sbjct: 529 AKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRI 588

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
           P GF  R+LPHFP+    P ++GF+ NS+  GL+  EFFFH M GREGL+DTAVKTA+TG
Sbjct: 589 PFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 648

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           Y+ RRL+KA+ED+ ++YD +VRNA G I+QF YG+DG+D   +E +      FD L +  
Sbjct: 649 YIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQV-----FDSLRLST 703

Query: 801 K 801
           K
Sbjct: 704 K 704


>gi|397135816|gb|AFO11403.1| RNA polymerase I, partial [Candida boidinii]
          Length = 870

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 296/715 (41%), Positives = 432/715 (60%), Gaps = 47/715 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  +L +FK ++  DC  L  +E   RPE +IIT + VPP  +RPSV    S+ +E+
Sbjct: 14  VLLPSEILNIFKHISVEDCNKLGFNEDFARPEWMIITVLPVPPPPVRPSVAFTDSKRSED 73

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA- 199
           D+T +L  +++ N ++Q+ L    S   ++  +E L Q  +A Y+++D+ G P ++Q + 
Sbjct: 74  DLTYKLAEVLKANINVQK-LEMDGSPQHTINEFEALLQYHIATYMDNDIAGQPRALQKSG 132

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +AR LTYPE 
Sbjct: 133 RPIKSIRSRLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPEI 192

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI+KL + ++NGP+++PGA+ +   D   R+     +    ++L+ G  V+RHL D
Sbjct: 193 VTPYNIQKLTEYVRNGPNEHPGAKYV-IRDSGDRIDLRYNKRAGDIQLQYGWKVERHLMD 251

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
            D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+ E R
Sbjct: 252 DDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETR 311

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYMGDG 437
            E   +  V   + +P++ + ++   QD L     +T +D+F  YD+    +  CY    
Sbjct: 312 AELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIEYDQV---MNICYWIPN 368

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
            D V +P PAILKP  LW+GKQ+ S+ I P                    L R +G    
Sbjct: 369 WDGV-VPQPAILKPKPLWSGKQMLSMCI-PKGIF----------------LQRLDG---- 406

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
               +CP D  +   N E++ G + KAT+G     GL    +R+ G +  +G    + K+
Sbjct: 407 --SLLCPKDSGMLIINGEIMFGVVNKATVG-ATAGGLIHTTMREKGPYVCAGMFGNIQKV 463

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKG-KLISENYEVCNVKIKEY----NEGKLQLKPG 612
              W+ ++GFSIGI D      ++D    K I+E   V   K+++     ++  L+ +PG
Sbjct: 464 VNFWLLHNGFSIGIGDA-----IADGATMKTITETIAVAKEKVQQVITDAHKNLLEPEPG 518

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
               ++ E  ++ ILN  R+ AGK+   SL   N+   M   GSKGS INISQM ACVGQ
Sbjct: 519 MTVRESFEQKVSKILNEARDAAGKSAEASLKDSNNVKQMVTAGSKGSYINISQMSACVGQ 578

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           Q V G+R   GF DRSLPHF +      +KGFV NS+  GL+  EFFFH M GREGL+DT
Sbjct: 579 QIVEGKRIRFGFSDRSLPHFTKDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 638

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           AVKTA+TGY+ RRL+KALED+ + YD+S+RN+ G I+QFLYG+DG+D   +E ++
Sbjct: 639 AVKTAETGYIQRRLVKALEDIMVHYDSSIRNSVGDIIQFLYGEDGLDATQVEKQT 693


>gi|119494984|ref|XP_001264289.1| DNA-dependent RNA polymerase II largest subunit, putative
           [Neosartorya fischeri NRRL 181]
 gi|119412451|gb|EAW22392.1| DNA-dependent RNA polymerase II largest subunit, putative
           [Neosartorya fischeri NRRL 181]
          Length = 1750

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 296/715 (41%), Positives = 420/715 (58%), Gaps = 39/715 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QS 138
           ++ P   L +F+ ++  D  ++ LS    RPE +IIT + VPP  +RPSV++ GS   Q 
Sbjct: 213 VITPQMALNVFRNISHEDVRIMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSTSGQR 272

Query: 139 NENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVP 193
            E+D+T +L  II+ N ++Q+   E         F+SL     LQ  VA Y+++D+ G P
Sbjct: 273 GEDDLTYKLAEIIRANQNVQRCEQEGAPEHVVREFESL-----LQYHVATYMDNDIAGQP 327

Query: 194 FSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMAR 252
            +MQ + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +P  +AR
Sbjct: 328 KAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 387

Query: 253 ILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCI 312
            LTYPE V+ +NIEKL+Q + NGP+++PGAR I   +G  R+     R     +L  G  
Sbjct: 388 TLTYPEVVTPYNIEKLQQLVANGPNEHPGARYIVRDNG-ERIDLRHARRAGGQQLLYGWK 446

Query: 313 VDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHV 372
           V+RHL DGD++LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMN+HV
Sbjct: 447 VERHLMDGDIILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 506

Query: 373 PQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCC 432
           PQ+EE+R E   L  V  N+ +P+    L+   QD L   + I R+D F  +     +  
Sbjct: 507 PQSEESRAELKQLALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNIML 566

Query: 433 YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
           ++ D  D V +P PAILKP   WTGKQ+ S+ +    N                 L+R E
Sbjct: 567 WVPD-WDGV-IPPPAILKPRPRWTGKQMISMALPSGLN-----------------LLRVE 607

Query: 493 GDEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCM 551
            D     E   P  DG +     +L+ G   K T+G  +  G+   +  +YG        
Sbjct: 608 KDNSSLAEKFSPLTDGGLLIHGGQLMYGMFSKKTVG-ASGGGVIHTIFNEYGPDTAVAFF 666

Query: 552 NRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
           N    +   W+ ++GFSIGI D  P      +    + E  +          E  L+  P
Sbjct: 667 NGAQTIVNYWLLHNGFSIGIGDTIPDAITIQRIENCVRERKKEVEAITASATENTLEPLP 726

Query: 612 GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
           G +  +T E+ ++  LN  R++AG     SL   N+ + M++ GSKGS INISQM A VG
Sbjct: 727 GMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVG 786

Query: 672 QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
           QQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+D
Sbjct: 787 QQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLID 846

Query: 732 TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           TAVKTA+TGY+ R+L+KALE++ ++YD +VRN+ G ++QF+YG+DG+D A++E +
Sbjct: 847 TAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQFIYGEDGLDGAHIENQ 901



 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 131/399 (32%), Positives = 202/399 (50%), Gaps = 56/399 (14%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+       G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A  
Sbjct: 1071 SRFAKAGANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATN 1130

Query: 955  ISTPIITA---ELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
            I TP +T      +C+D E +A+ ++  +E T L  V ++ +I     + + VI  D + 
Sbjct: 1131 IKTPSMTVYQLPHKCHDKE-SAKQLRSVVEHTSLRSVTEATEIYYDPDIQTTVIENDRDM 1189

Query: 1012 IQDAHLCINADIVKES----------IVQTPKI------------KLKQQHIK------- 1042
            ++ ++  I  D+   S          I+  PK+            K+KQ + K       
Sbjct: 1190 VE-SYFIIPEDVTDASSRQSKWLLRIILSRPKLLDKGLTVQDVAAKIKQAYPKDIAVIFS 1248

Query: 1043 -------VLDFRKLEIFPPVDKSKIHFELYSLK----NVLPMVIVKGIKTVERVVIAEKE 1091
                   V+  R+++ +   +  +      +LK    ++L  + ++G++ VER  I   E
Sbjct: 1249 DNNADEQVIRIRQIQDYKEDEDDEDIEYDVTLKKLEQHLLDTLTLRGVQGVERAFI--NE 1306

Query: 1092 KEKRKVKENGEK---------KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLG 1142
            K K +V E+G           K++ L   G+ L  V+   G+D  +T SN   EV +  G
Sbjct: 1307 KSKVRVLEDGSLFASKTDPLCKEWVLETSGSSLGEVLAVPGVDATRTYSNQFIEVFEVFG 1366

Query: 1143 IEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLA 1202
            IEAAR  ++ E+ + +   G  ++ RH+ LL D+MT RG +  +TR GI + D   LM  
Sbjct: 1367 IEAARTAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRC 1426

Query: 1203 SFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            SFE+T + L  A+  G  D   GVSE +I+G   P GTG
Sbjct: 1427 SFEETVEILLEAAAFGELDDCRGVSENLILGQMAPAGTG 1465


>gi|70996164|ref|XP_752837.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
           fumigatus Af293]
 gi|66850472|gb|EAL90799.1| DNA-dependent RNA polymerase II largest subunit, putative
           [Aspergillus fumigatus Af293]
 gi|159131590|gb|EDP56703.1| DNA-dependent RNA polymerase II largest subunit, putative
           [Aspergillus fumigatus A1163]
          Length = 1750

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 296/715 (41%), Positives = 420/715 (58%), Gaps = 39/715 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QS 138
           ++ P   L +F+ ++  D  ++ LS    RPE +IIT + VPP  +RPSV++ GS   Q 
Sbjct: 213 VITPQMALNVFRNISHEDVRIMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSTSGQR 272

Query: 139 NENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVP 193
            E+D+T +L  II+ N ++Q+   E         F+SL     LQ  VA Y+++D+ G P
Sbjct: 273 GEDDLTYKLAEIIRANQNVQRCEQEGAPEHVVREFESL-----LQYHVATYMDNDIAGQP 327

Query: 194 FSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMAR 252
            +MQ + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +P  +AR
Sbjct: 328 KAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 387

Query: 253 ILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCI 312
            LTYPE V+ +NIEKL+Q + NGP+++PGAR I   +G  R+     R     +L  G  
Sbjct: 388 TLTYPEVVTPYNIEKLQQLVANGPNEHPGARYIVRDNG-ERIDLRHARRAGGQQLLYGWK 446

Query: 313 VDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHV 372
           V+RHL DGD++LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMN+HV
Sbjct: 447 VERHLMDGDIILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 506

Query: 373 PQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCC 432
           PQ+EE+R E   L  V  N+ +P+    L+   QD L   + I R+D F  +     +  
Sbjct: 507 PQSEESRAELKQLALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIML 566

Query: 433 YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
           ++ D  D V +P PAILKP   WTGKQ+ S+ +    N                 L+R E
Sbjct: 567 WVPD-WDGV-IPPPAILKPRPRWTGKQMISMALPSGLN-----------------LLRVE 607

Query: 493 GDEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCM 551
            D     E   P  DG +     +L+ G   K T+G  +  G+   +  +YG        
Sbjct: 608 KDNSSLAEKFSPLTDGGLLIHGGQLMYGMFSKKTVG-ASGGGVIHTIFNEYGPDTAVAFF 666

Query: 552 NRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
           N    +   W+ ++GFSIGI D  P      +    + E  +          E  L+  P
Sbjct: 667 NGAQTIVNYWLLHNGFSIGIGDTIPDAITIQRIENCVRERKKEVEAITASATENTLEPLP 726

Query: 612 GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
           G +  +T E+ ++  LN  R++AG     SL   N+ + M++ GSKGS INISQM A VG
Sbjct: 727 GMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVG 786

Query: 672 QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
           QQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+D
Sbjct: 787 QQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLID 846

Query: 732 TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           TAVKTA+TGY+ R+L+KALE++ ++YD +VRN+ G ++QF+YG+DG+D A++E +
Sbjct: 847 TAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQFIYGEDGLDGAHIENQ 901



 Score =  193 bits (490), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 130/399 (32%), Positives = 201/399 (50%), Gaps = 56/399 (14%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+       G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A  
Sbjct: 1071 SRFAKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATN 1130

Query: 955  ISTPIITA---ELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
            I TP +T       C+D E +A+ ++  +E T L  V ++ +I     + + VI  D + 
Sbjct: 1131 IKTPSMTVYQLPHRCHDKE-SAKQLRSVVEHTSLRSVTEATEIYYDPDIQTTVIENDRDM 1189

Query: 1012 IQDAHLCINADIVKES----------IVQTPKI------------KLKQQHIK------- 1042
            ++ ++  I  D+   +          I+  PK+            K+KQ + K       
Sbjct: 1190 VE-SYFIIPEDVTDATSRQSKWLLRIILSRPKLLDKGLTVQDVAAKIKQAYPKDIAVIFS 1248

Query: 1043 -------VLDFRKLEIFPPVDKSKIHFELYSLK----NVLPMVIVKGIKTVERVVIAEKE 1091
                   V+  R+++ +   +  +      +LK    ++L  + ++G++ VER  I   E
Sbjct: 1249 DNNADEQVIRIRQIQDYKEDEDDEDIEYDVTLKKLEQHLLDTLTLRGVQGVERAFI--NE 1306

Query: 1092 KEKRKVKENGEK---------KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLG 1142
            K K +V E+G           K++ L   G+ L  V+   G+D  +T SN   EV +  G
Sbjct: 1307 KSKVRVLEDGSLFASKTDPLCKEWVLETSGSSLGEVLAVPGVDATRTYSNQFIEVFEVFG 1366

Query: 1143 IEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLA 1202
            IEAAR  ++ E+ + +   G  ++ RH+ LL D+MT RG +  +TR GI + D   LM  
Sbjct: 1367 IEAARTAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRC 1426

Query: 1203 SFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            SFE+T + L  A+  G  D   GVSE +I+G   P GTG
Sbjct: 1427 SFEETVEILLEAAAFGELDDCRGVSENLILGQMAPAGTG 1465


>gi|299116996|emb|CBN73767.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1904

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 296/715 (41%), Positives = 418/715 (58%), Gaps = 31/715 (4%)

Query: 94  LFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
           +FK +++ D   L L+    RP+ L+IT + VPP  +RPSV +D    +E+D+T +L  I
Sbjct: 246 IFKNISEEDMVTLGLNPQYSRPDWLVITVLPVPPPHVRPSVALDAGARSEDDLTHQLVNI 305

Query: 151 IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFVQRL 209
            + N  L+  +     A    +  + LQ +VA   +++  G P   Q   +PL     RL
Sbjct: 306 CKANMRLEACVRTGEPAHIVESFEQLLQYKVAALFDNERAGQPQETQRSGKPLKTLRARL 365

Query: 210 KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
           KGK+GR RGNL GKRV+++ RTVI+ DPNL I +V +P  +A  LT PE V+  N+E++ 
Sbjct: 366 KGKEGRIRGNLMGKRVDFSARTVITADPNLGIDQVGVPKSIALNLTVPELVTAFNVEEMA 425

Query: 270 QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQP 329
           Q +  GP ++PGAR I   DG  RV     RN+ ++ L+ G  V+RHL D D+++FNRQP
Sbjct: 426 QLVARGPLEHPGARYIVRHDGV-RVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQP 484

Query: 330 SLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQ 389
           SLH+MSIM HR +++ W T R N SV +PYNADFDGDEMN+HVPQ+  A+ EA  LM V 
Sbjct: 485 SLHKMSIMGHRVKVLDWSTFRMNLSVTSPYNADFDGDEMNLHVPQSLVAKAEAQELMMVP 544

Query: 390 NNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLPTPA 447
            N+ +P++ + ++    D L     +T++DTF +R      LM     DG     +P PA
Sbjct: 545 RNIVSPQSNKPVMGI--DSLLGVCKMTKRDTFVERDLLMNLLMWVETWDG----KVPAPA 598

Query: 448 ILKPVELWTGKQLFSVLI-RPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPND 506
           ILKP  LWTGKQLFS++  + H +    VNL      +                 +  +D
Sbjct: 599 ILKPKPLWTGKQLFSLICPKVHGSRTGKVNLETSANGHPKG-----------ANPLNNSD 647

Query: 507 GFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHG 566
             V     EL+ G + K T+G+G + GL  V   + G   T   MN + KL   W+    
Sbjct: 648 TKVLIHEGELMMGNIDKKTVGSGAQ-GLIHVSWLEKGWDVTRLFMNMIQKLVNNWLVVTS 706

Query: 567 FSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDI 626
           FSIG+ D     E     G +I          +++  +G+L ++PG    ++LE+ I  +
Sbjct: 707 FSIGVADTVADTETIMTIGGIIDTAKRNVQSLVEQGQKGELTMQPGKSMMESLESSINKV 766

Query: 627 LNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFID 686
           LN  R+++G +   SL  RN+   M+  GSKGS INISQ++ACVGQQ+V G+R P GF  
Sbjct: 767 LNTARDESGTSAQVSLNERNAVKAMADAGSKGSFINISQILACVGQQNVEGQRIPYGFKR 826

Query: 687 RSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRL 746
           R+LPHF +    P ++GFV NS+  GLS  EFFFH MGGREGL+DTAVKTA+TGY+ RRL
Sbjct: 827 RTLPHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRL 886

Query: 747 IKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVK 801
           +KALE +S +YD ++RN    +VQFLYG+DGMD   +E +      FD LLM  K
Sbjct: 887 VKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQ-----RFDILLMSKK 936



 Score =  169 bits (429), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 135/426 (31%), Positives = 205/426 (48%), Gaps = 66/426 (15%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            + +   +  I    +++   +V  G   G + AQSIGEP TQMTL TFHFAGV++ N+T 
Sbjct: 1095 LNKAAFDYVIGEIHAKFMSSKVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTL 1154

Query: 941  GVPRIKEIINGAKRISTPIITAELE--------CNDNENAARVVKGRIEKTLLGQVAKSI 992
            GVPR+KEIIN AK + TP +T  LE            E A RVV   +E   LG +  S 
Sbjct: 1155 GVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVD-ILEYVTLGDITTST 1213

Query: 993  KIVMTSRLASIVIALDMETIQDAHLCINA------------------DIVKESI------ 1028
            +I       S V+  D+E ++  H  I                    ++ +E++      
Sbjct: 1214 QIYYDPDPRSTVVDEDVELLE-GHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLD 1272

Query: 1029 -VQTPK------------IKLKQQHIK-VLDFRKLEIFPPVDKSKIHFE----------- 1063
             V+  K            I+  Q   K VL  R L+  P  DK +   E           
Sbjct: 1273 VVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVP--DKIEAEPEAEDMAEADDVA 1330

Query: 1064 -LYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENG---EKKKYRLLVEGTGLQAVM 1119
             L  L+  L  + + GI  + +V ++E  K K   + NG     K++ L  +GT L A +
Sbjct: 1331 MLKHLEKNLLRLQLSGIAGISKVYMSEVTKPKFD-EINGFAQRHKEWVLETDGTNLMAAL 1389

Query: 1120 GAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTF 1179
             AE ID  +T SN + E    LGIE AR  ++ E    ++  G  ++ RH+  L D+MTF
Sbjct: 1390 CAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTF 1449

Query: 1180 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLG 1239
            RG ++ ITR GI ++D   ++ +SFE+T + L  A+V    D ++GV++ I++G    LG
Sbjct: 1450 RGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQFANLG 1509

Query: 1240 TGILKI 1245
            TG + +
Sbjct: 1510 TGTMDL 1515


>gi|113957534|gb|ABI49121.1| RNA polymerase II largest subunit [Pyxine subcinerea]
          Length = 1015

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 295/711 (41%), Positives = 422/711 (59%), Gaps = 44/711 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQ--SNE 140
           + P   L +F+ M+  D + + LS    RPE +IIT + VPP  +RPS+  D     + E
Sbjct: 134 ITPQMALNIFRHMSAEDVKNIGLSNDYARPEWMIITVLPVPPPPVRPSIKTDAGDGPAGE 193

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA 199
           +D+T +L  II+ N ++++  VE   A   +  +ETL Q  VA Y+ +D  G P ++Q +
Sbjct: 194 DDLTYKLGDIIRANGNVRRGEVEGTPA-HIIEEFETLLQFHVATYMANDTAGQPQALQKS 252

Query: 200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RP+     RL+GK+GR RGNL GKRV+++ RTVI+ DPN+ + EV +P  +AR LTYPE
Sbjct: 253 GRPVKAIRSRLEGKEGRVRGNLMGKRVDFSARTVITGDPNISLDEVGVPRSIARTLTYPE 312

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            V+ +NI KL Q ++NGP+++PGAR +   D   R+     +    + L+ G  V+RH+ 
Sbjct: 313 TVTPYNIHKLHQLVKNGPNEHPGARYV-IRDTGERIDLRYHKRAGDISLQYGWKVERHIV 371

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE 
Sbjct: 372 DGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 431

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
           R E   L  V  N+ +P+    L+   QD L   + I R+D F ++     +  ++ D  
Sbjct: 432 RAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLNQDQVMNILLWVPD-W 490

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           D + +P PAILKP  +WTGKQ+ S++I P  N+                     GD    
Sbjct: 491 DGI-IPQPAILKPSPMWTGKQIISLVIPPGLNL------------------GRSGD---- 527

Query: 499 IETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
            +   P +D  +   N EL+ G L K  +G  +  G+  ++  + G  A     N    +
Sbjct: 528 -DGFSPIDDSGLLISNGELMYGLLSKKIVG-ASSAGIIHIVYNEKGPEAAMAFFNGAQTV 585

Query: 558 SARWIGNHGFSIGIDDVQPKKE----LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
              W+ ++GFSIGI D  P +E    + D   K  +E  E+     K   E  L   PG 
Sbjct: 586 VNYWLLHNGFSIGIGDTIPDRETIKHIEDAVNKQKAEVLEIT----KSATESVLDTLPGM 641

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
           +  +T E+ ++  LN+ R+DAG     SL   N+ + M++ GSKGS I+ISQM A VGQQ
Sbjct: 642 NVRETFESRVSKALNKARDDAGTETEKSLKDLNNAIQMARSGSKGSTIDISQMTAVVGQQ 701

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
           SV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTA
Sbjct: 702 SVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTA 761

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           VKTA+TGY+ RRL+KALED+  +YD ++RN+ G IVQFLYG+DG+D A +E
Sbjct: 762 VKTAETGYIQRRLVKALEDVMAKYDGTIRNSLGDIVQFLYGEDGLDGATIE 812


>gi|448616560|ref|ZP_21665270.1| DNA-directed RNA polymerase subunit A' [Haloferax mediterranei ATCC
           33500]
 gi|445751215|gb|EMA02652.1| DNA-directed RNA polymerase subunit A' [Haloferax mediterranei ATCC
           33500]
          Length = 974

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 280/723 (38%), Positives = 410/723 (56%), Gaps = 43/723 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++   F+ + D D   L +     RPE +I+T + VPP+  RPS+ +D  Q +E+D
Sbjct: 245 LMPSDIRDWFEDIPDDDLVTLGIDPERSRPEWMILTVLPVPPVTARPSITLDNGQRSEDD 304

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N    +              WE LQ  V  +I++++ G P +  +  RP
Sbjct: 305 LTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFIDNEISGTPPARHRSGRP 364

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+A  +T    V+
Sbjct: 365 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVATEMTQTMNVT 424

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
           + NI++ RQ ++NGP+ +PGA  +R PDG    +  K   +LA +++ G  V+RHL DGD
Sbjct: 425 ERNIDEARQYVRNGPESHPGANYVRRPDGRRLKVTEKNCEELAEKVELGWEVNRHLVDGD 484

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +V+FNRQPSLHRMSIM H   +MP++T R N  VC PYNADFDGDEMNMH  Q EEAR E
Sbjct: 485 IVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAE 544

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD-TFYDRAAFSLMCCYMGDGMDR 440
           A +LM VQ  + +P+ GE ++ + QD ++ ++L+T  +  F +  A  L+         R
Sbjct: 545 ARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTHDNPEFVETQALDLLRAT------R 598

Query: 441 VD-LPTPAILKP--VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
           VD LP PA      +  WTG+Q+FS L+    NM            +++K+  T      
Sbjct: 599 VDTLPEPAGEDEDGIPYWTGRQIFSELLPDDLNME-----------FTSKVGDT------ 641

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
                      V   + +L+ G + +  +G    + +  VL +DY    +   +N +A L
Sbjct: 642 -----------VSIVDGQLVEGTIDEDAVGAFGGE-IVDVLAKDYSKTRSRIFINEIASL 689

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
           + R I + G SIGIDD     E + +  + I   Y+     I+ Y  G+L+  PG    +
Sbjct: 690 AMRAIMHFGLSIGIDDESIPDEATAQVDEAIDAAYDKIQELIEIYEAGELESLPGRSVDE 749

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           TLE  I   L + R+ AG+         N  ++MS+ G++ S +N++QM  CVGQQ+V G
Sbjct: 750 TLEMKIMQRLGKARDSAGEIAEDHFAEDNPAVVMSKSGARASMLNLTQMAGCVGQQAVRG 809

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            R   G+ DR+L H+ +      A GFV NS+ +GL+  EFFFH MGGREGLVDTAV+T+
Sbjct: 810 ERINRGYEDRTLSHYQKGDLSADAHGFVENSYRAGLTPREFFFHAMGGREGLVDTAVRTS 869

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
            +GY+ RRLI AL +L  QYD SVR+  G IVQF +G+DG  P  +      P++ + + 
Sbjct: 870 KSGYLQRRLINALSELEAQYDGSVRDTSGTIVQFEFGEDGTSPVKVSSDDEMPIDVENIA 929

Query: 798 MKV 800
            +V
Sbjct: 930 DRV 932


>gi|58267574|ref|XP_570943.1| DNA-directed RNA polymerase ii largest subunit [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|134112243|ref|XP_775097.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257749|gb|EAL20450.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227177|gb|AAW43636.1| DNA-directed RNA polymerase ii largest subunit, putative
           [Cryptococcus neoformans var. neoformans JEC21]
          Length = 1786

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 294/712 (41%), Positives = 417/712 (58%), Gaps = 39/712 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNEN 141
           ++P  V  + K++T  D  ++ L+    RP+ +I+T + VPP A+RPS+ +DG +  +E+
Sbjct: 217 ISPGEVYNILKKITPEDLHIMGLNADYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSED 276

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAG--WETLQVEVAQYINSDVRGVPFSMQVA 199
           D+T +L +II+ N  +++  +EA     S+    ++ LQ  V  Y+++D+ G+P   Q  
Sbjct: 277 DLTYKLSQIIKFNGVVRR--MEAEGVPPSVVNEQFDLLQYHVCTYMDNDIAGLPRDQQKG 334

Query: 200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            R +     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ +V +P  +A  LTYPE
Sbjct: 335 GRAIKAIRARLKGKEGRMRGNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPE 394

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQ-LAVELKSGCIVDRHL 317
           RV+ +NI  L+  + NGP  YPGAR   Y   T   +  K+R     + L+ G IV+RHL
Sbjct: 395 RVTPYNIVYLQTLVNNGPATYPGARY--YVKDTGERVDLKYRKSGEPISLQFGWIVERHL 452

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
           +DGD VLFNRQPSLH+MS+M HR ++M + T R N SV +PYNADFDGDEMN+HVPQ+EE
Sbjct: 453 KDGDYVLFNRQPSLHKMSMMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEE 512

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--G 435
            R E   +  V   + +P+  + ++   QD L      T +D F D      +  ++   
Sbjct: 513 TRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHILLWLPEW 572

Query: 436 DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
           DG     +P PAI KP  +WTGKQL S+ I P       +N+T K     + +  T  DE
Sbjct: 573 DGT----IPPPAIFKPKPMWTGKQLLSMTI-PKG-----INITYKNNEKPSPIDVT--DE 620

Query: 496 EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
            + IE            N EL+ G + K   G+ N +GL  V+ R+ G  A     + + 
Sbjct: 621 NVLIE------------NGELVHGTIVKNMAGSAN-NGLVHVIFRELGHIAARDFFSAVQ 667

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           ++   W+ + GFS+GI D    K         + E  E     I+E    +++ KPG   
Sbjct: 668 RVVNYWLLHFGFSVGIGDTIVDKATMAGITNRMVEAKEAVQKLIQEAEANRMKPKPGMTI 727

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            +TLEA I   LN+ R+  GK    +L   N+   M   G+KGS INISQM   VGQQ V
Sbjct: 728 RETLEASIAAELNKARDWTGKTTQDNLKADNNVKQMVVSGAKGSFINISQMSGVVGQQFV 787

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R   GF  RSLPHF R    P ++GFV NS+  GL+  EF+FH MGGREGL+DTAVK
Sbjct: 788 EGKRISFGFRHRSLPHFSRDDYGPESRGFVENSYLRGLTPQEFWFHAMGGREGLIDTAVK 847

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           TA+TGY+ RRL+KA+EDL + YD +VRN+   +VQFLYG+DGMD A ME +S
Sbjct: 848 TAETGYIQRRLVKAMEDLKVAYDGTVRNSVNEVVQFLYGEDGMDGAAMEKQS 899



 Score =  186 bits (472), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 200/386 (51%), Gaps = 45/386 (11%)

Query: 902  VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIIT 961
            V A   +G + AQSIGEP TQMTL TFH+AGVAS ++T GVPR+KEIIN A  I TP + 
Sbjct: 1074 VNAAEMVGTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPRLKEIINVAVNIRTPALN 1133

Query: 962  A--ELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCI 1019
               E E +  E  A  +  ++  T L  +  +++I    +L S  I  D + + DA   I
Sbjct: 1134 VYLEPEYSKTEEDAHQIMRKLTYTRLRDITATVEIFYDPKLDSTDIEEDKDFV-DAFFAI 1192

Query: 1020 NADIVKESIVQTPKIKLKQQHIKVLD--FRKLEIFPPVDKS--KIHFELYSLKNVLPMVI 1075
              + ++  +     ++L+    KVL+  +   +I   + ++  K  F ++S  N   +VI
Sbjct: 1193 PDEDIRLELHSPWLLRLELDRAKVLEGGYEMSQIVDAIAETVGKDVFVIHSEDNAPKLVI 1252

Query: 1076 ---------------------------------VKGIKTVERVVIAEKEKEKRKVKENGE 1102
                                             + GI  + RV I+E ++    V +NGE
Sbjct: 1253 RIRVVAEKEDEELLGDEDMFLKRIEGTLLDQVELGGITGITRVFISEGKQ--VVVSQNGE 1310

Query: 1103 ---KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMK 1159
               +K++ L  +G  L+ VM  +G++  +T SN+ +EV +TLGIEAAR  +  E+N  ++
Sbjct: 1311 YDQEKEWFLETDGINLKEVMAVDGVNAFRTYSNNCYEVYETLGIEAARNALYKELNGVIE 1370

Query: 1160 AHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGR 1219
              G  ++ RH+ LL DLM  +G ++ ITR GI + D   L  A+FE+T + L  A+  G 
Sbjct: 1371 MGGSYVNYRHLALLCDLMCSKGALMSITRHGINRTDAGALSRAAFEETVEILLEAAAVGD 1430

Query: 1220 DDRIEGVSECIIMGIPMPLGTGILKI 1245
             D  +GV+E +++G   P+GTG   +
Sbjct: 1431 VDDCKGVAENVLLGQMAPMGTGAFDV 1456


>gi|397135800|gb|AFO11395.1| RNA polymerase I, partial [Barnettozyma populi]
          Length = 871

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 293/728 (40%), Positives = 432/728 (59%), Gaps = 50/728 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  +L +FK ++  DC  L       RPE LII+ + VPP  +RPS+  + +Q  E+
Sbjct: 14  LLTPSEILNVFKHISPEDCVKLGFHNDYARPEWLIISVLPVPPPPVRPSISFNDTQRGED 73

Query: 142 DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  I++ N ++Q+  ++ +     + F+SL     LQ  VA Y+++D+ G P ++
Sbjct: 74  DLTYKLSDIMKANINVQKLEMDGSPQHVINEFESL-----LQFHVATYMDNDIAGQPQAL 128

Query: 197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q + RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +AR LT
Sbjct: 129 QKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLT 188

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVD 314
           YPE V+ +NI+KL + ++NGP+++PGA+ +   +G    L Y K    +   L+ G  V+
Sbjct: 189 YPETVTPYNIQKLTELVRNGPNEHPGAKYVIRDNGDRLDLRYNKRAGDIV--LQYGWKVE 246

Query: 315 RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
           RHL D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 247 RHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 306

Query: 375 TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
           +EE R E + +  V   + +P++ +  +   QD L     +T +D+F  YD+    L   
Sbjct: 307 SEETRAELMNIAAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFIEYDQMMNILYWI 366

Query: 433 YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
              DG+    +P PAILKP  LW+GKQ+ S+ I    N++ +                  
Sbjct: 367 PEWDGV----IPQPAILKPKPLWSGKQMMSMTIPKGINLQRF------------------ 404

Query: 493 GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
            DE   +  + PND  +   N E++ G + K T+G  N  GL   ++R+ G+   +    
Sbjct: 405 -DEGTTL--LSPNDNGMLVINGEIMFGVVDKKTVGATNG-GLIHTVMREKGSRQCADLFG 460

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
            + K+   W+ ++GFSIGI D     E   +  + I+   E       E  + KL  K G
Sbjct: 461 SIQKVVNFWLLHNGFSIGIGDTIADTETMKEITEAIAIAKEKVEEVTDEAQQNKLTAKHG 520

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
               ++ E  +   LN  R+ AG++   +L   N+   M   GSKGS INI+QM ACVGQ
Sbjct: 521 MTLRESFEDNVIRYLNEARDKAGRSAEVNLKGLNNVKQMVSAGSKGSFINIAQMSACVGQ 580

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           QSV G+R   GF DR+LPHF +    P +KGFV NS+  GL+  EF+FH MGGREGL+DT
Sbjct: 581 QSVEGKRIAFGFGDRTLPHFAKDDYSPQSKGFVENSYLRGLTPQEFYFHAMGGREGLIDT 640

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS----- 787
           AVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D  ++E ++     
Sbjct: 641 AVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFIYGEDGLDAGHVEKQTIDTIP 700

Query: 788 GEPLNFDR 795
           GE   F++
Sbjct: 701 GEDAAFEK 708


>gi|397135971|gb|AFO11480.1| RNA polymerase I, partial [Botryozyma nematodophila]
          Length = 872

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 296/713 (41%), Positives = 428/713 (60%), Gaps = 43/713 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  +L +FK M+ TD + L L+E   RPE +IIT + VPP  +RPSV ++ +   E+D
Sbjct: 15  LTPSEILNVFKHMSGTDIQRLGLNEDYARPEWMIITVLPVPPPPVRPSVAINETARGEDD 74

Query: 143 ITERLKRIIQTNASLQ---QELVEAN--SAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ 197
           +T +L  I++ NA++Q   QE   A+  + F++L     LQ  VA Y+++D+ G P ++Q
Sbjct: 75  LTYKLADILKANANVQRCDQEGAPAHVVNEFETL-----LQFHVATYMDNDIAGQPQALQ 129

Query: 198 VA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTY 256
            + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTY
Sbjct: 130 KSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTY 189

Query: 257 PERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
           PE V+ +NI KL Q I+NGP+++PGA+ +   D   R+     +    + L+ G IV+RH
Sbjct: 190 PEIVTPYNINKLSQLIRNGPNEHPGAKYV-IRDTGERIDLRYHKRTGDIPLQYGWIVERH 248

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           ++DGD VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+E
Sbjct: 249 IQDGDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 308

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYM 434
           E R E   L  V   + +P++ + ++   QD L     +T++DTF  ++     LM    
Sbjct: 309 ETRAELSQLCMVSLQIVSPQSNKPVMGIVQDSLCGIRKLTKRDTFITFEEMMDILMWVPD 368

Query: 435 GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
            +G+    +  PAI++P  LWTGKQ+ S+ I    N++ Y   T K              
Sbjct: 369 WNGI----VVQPAIIRPKPLWTGKQVISMCIPKGINIQRYEEGTGK-------------- 410

Query: 495 EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                  + P D  +   N E+I G + K T+G G +  L   ++R+ G          +
Sbjct: 411 -------LSPTDNGMLVDNGEIIYGVVDKKTVG-GKEGDLIHTIMREKGNVVCCNFFTGI 462

Query: 555 AKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
            ++   W+ ++GFSIGI D            + I E  E     I +    KL  +PG  
Sbjct: 463 QQVVNFWLLHNGFSIGIGDTIADAATMTDITRTIDEAKEKVQQIITDAEANKLPAEPGMT 522

Query: 615 AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
             ++ E  ++  LN+ R+ AG++   SL   N+   M   GSKGS INISQM ACVGQQ 
Sbjct: 523 VRESFEHKVSQTLNQARDVAGRSAEISLKDSNNVKQMVIAGSKGSFINISQMSACVGQQI 582

Query: 675 VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
           V G+R P GF  R+LPHF +    P ++GF+ NS+  GL+  EFFFH M GREGL+DTAV
Sbjct: 583 VEGKRIPFGFKYRTLPHFTKDDYSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAV 642

Query: 735 KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           KTA+TGY+ RRL+KALED+ +QYD +VRN+ G I+QF+YG+DG+D A +E ++
Sbjct: 643 KTAETGYIQRRLVKALEDVMVQYDTTVRNSLGDIIQFIYGEDGLDGAQVEKQT 695


>gi|443728942|gb|ELU15060.1| hypothetical protein CAPTEDRAFT_170227 [Capitella teleta]
          Length = 1916

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/719 (39%), Positives = 425/719 (59%), Gaps = 34/719 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+    L +FKR++D +  ++ +     RP+ +II  + VPP+++RP+V+M GS  N++
Sbjct: 213 VLSAERALEIFKRISDEESNIIGMDPKWARPDWMIIQVLPVPPLSVRPAVVMYGSARNQD 272

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  II+ N  L++  +   +A       + LQ  VA  +++++ G+P ++Q + R
Sbjct: 273 DLTHKLADIIKINNQLKRNELNGAAAHILDEDTKMLQFHVATLVDNEMPGLPRAVQKSGR 332

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++GRTVI+PDP L IT+V +P  +A+ LT+PE V
Sbjct: 333 PLKSLKQRLKGKEGRIRGNLMGKRVDFSGRTVITPDPMLAITQVGVPRSIAQNLTFPEIV 392

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           +  NI+ L + ++ G ++YPGA+ I   +G  RV          + L+ G  V+RH+++ 
Sbjct: 393 TPFNIDSLSELVRRGANQYPGAKYIIRDNGD-RVDLRYHPKDSDLHLQCGYKVERHMQNN 451

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D ++FNRQP+LH+MS+MCHR +I+PW T R N SV  PYNADFDGDEMN+H+ Q+ E R 
Sbjct: 452 DYIVFNRQPTLHKMSMMCHRVKILPWSTFRLNLSVTTPYNADFDGDEMNLHLAQSLETRA 511

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           E   L  V   + TP+    ++   QD LT+   +T++D F ++     +  Y+     R
Sbjct: 512 EINQLAAVNRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLEKRDMMNLLMYLPTWNGR 571

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR-- 498
             +P PAILKP  LWTGKQ+FS++I    N           +T+S     T  DEE +  
Sbjct: 572 --MPQPAILKPKPLWTGKQVFSLIIPGRVNCI---------RTHS-----THPDEEDKGP 615

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
            + + P D  V   + ELI G L K TLG  +   L  V+  + G          +  + 
Sbjct: 616 YKWISPGDTKVLVEDGELICGILCKKTLG-ASSGSLMHVVFLEQGFEQAGDFYGNIQTVI 674

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G SIGI D +   +  SD +  +     +V +V  K +N+ +L+  PG    Q
Sbjct: 675 NNWLLLEGHSIGIGDTIADPQTYSDIQNAIKKAKLDVIDVIEKAHND-ELEPTPGNTLRQ 733

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G     SL   NS   M   GSKG+ INISQ++ACVGQQ+V G
Sbjct: 734 TFENQVNRILNDARDKTGSTAQKSLSEFNSFKAMVVAGSKGNKINISQVIACVGQQNVEG 793

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 794 KRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 853

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           +TGY+ RRL+KA+E + ++YD +VRN    ++Q  YG+DG+        +GE + F +L
Sbjct: 854 ETGYIQRRLMKAMESVMVKYDGTVRNQIEQLIQLTYGEDGL--------AGEWVEFQQL 904



 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 205/413 (49%), Gaps = 48/413 (11%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  +    +R++    + G   GA+ AQS+GEP TQMTL TFH+AGV++ N+T 
Sbjct: 1058 LSSQAFEWLLGEIEARFQQAMTQPGEMCGALAAQSLGEPATQMTLNTFHYAGVSAKNVTL 1117

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN +K+  TP +T  L  +   +   A+ V  R+E T L +V  +  I   +
Sbjct: 1118 GVPRLKEIINVSKKPKTPSLTVFLTGKAAKDAEKAKDVLCRLEHTTLRKVTANTAIYYDA 1177

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESI-----------VQTPKIKLKQQHIKVL--- 1044
               + VI  D + +   +   + D+ + S            +   K+ ++Q   K+    
Sbjct: 1178 DPMNSVICEDQDWVSIYYEMPDFDVSRISPWLLRIELDRKRMTDKKLTMEQISEKITAGF 1237

Query: 1045 -------------------------DFRKLEIFPPVDKSKIHFELYSLK-NVLPMVIVKG 1078
                                     D  K +    VDK +    L  ++ N+L  + ++G
Sbjct: 1238 GDDLNCIFNDDNAEKLVLRIRIMNTDENKADDEEQVDKMEDDVFLRCIEANMLTDMSLQG 1297

Query: 1079 IKTVERVVI---AEKEKEKRKVKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSN 1132
            ++++ +V +      +K++ ++  +GE K   ++ L  +GTGL  V+  + +D  +T +N
Sbjct: 1298 LESIAKVYMHLPTTDDKKRIELTPSGEFKAIQEWILETDGTGLIQVLSEKDVDPIRTTTN 1357

Query: 1133 HIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQ 1192
             I E+   LG+EA R  I  E+   +   G  ++ RH+ LL D+MT +G ++ ITR GI 
Sbjct: 1358 DIVEIFSCLGVEAVRKSIEKEMFNVISFDGSYVNYRHLALLCDIMTAKGHLMAITRHGIN 1417

Query: 1193 KMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            + +   L   SFE+T D L  A+ +   D ++GVSE I++G    +GTG   +
Sbjct: 1418 RQETGCLARCSFEETVDILMEAASHNEVDPMKGVSENIMLGQLARIGTGCFDL 1470


>gi|410979885|ref|XP_003996311.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Felis
           catus]
          Length = 1817

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 291/734 (39%), Positives = 430/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS   ++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRFARPEWMIVTVLPVPPLSVRPAVVMQGSAXXQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNN-ELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  174 bits (440), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 124/401 (30%), Positives = 197/401 (49%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L      +A R   +  R+E T L +V  +  I       S V+A D E +
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIK------------------------------ 1042
               +   + D+ + S     +++L ++H+                               
Sbjct: 1194 NVYYEMPDFDVARISPWLL-RVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNA 1252

Query: 1043 ---VLDFRKL--------EIFPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEK 1090
               VL  R +        E    VDK      L  ++ N+L  + ++GI+ + +V +   
Sbjct: 1253 EKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLP 1312

Query: 1091 EKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
            + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I E+   LGIE
Sbjct: 1313 QTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIE 1372

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            A R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D   LM  SF
Sbjct: 1373 AVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSF 1432

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1433 EETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|83320450|gb|ABC02852.1| RNA polymerase II largest subunit, partial [Rhizophlyctis rosea]
          Length = 1006

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 298/727 (40%), Positives = 431/727 (59%), Gaps = 38/727 (5%)

Query: 74  ESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPS 130
           E K  V   T  ++P  VL +F+ ++D D + + LS    RPE ++I+ + VPP+ +RP+
Sbjct: 118 EDKPEVKAET--ISPERVLTIFRNISDEDIKDMGLSPQFARPEWMMISVLPVPPMPVRPA 175

Query: 131 VIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWE-TLQVEVAQYINSDV 189
           V ++G    E+D+T  L+ I++TN  L++ L E  +    ++ +E  LQ  VA ++++D 
Sbjct: 176 VAVEGQAKGEDDLTYALRNIVETNKKLREAL-EQGAPLHVISDFELALQYHVATFMDNDG 234

Query: 190 RGVPFSM-QVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPI 248
            G   +  +  RPL     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL I +V +P 
Sbjct: 235 AGANAAAHKSGRPLKTIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPR 294

Query: 249 RMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELK 308
            +AR LT+PE V+  N EKL   + NGP  +PGA+ +   +G    L  ++  + +V LK
Sbjct: 295 SIARNLTFPEVVTKCNFEKLAAAVANGPTAHPGAKYVINSNGDRTDL--RYAREDSVILK 352

Query: 309 SGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEM 368
            G  V+RHL D D+++FNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEM
Sbjct: 353 IGDKVERHLMDDDLIIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEM 412

Query: 369 NMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DRAA 426
           N+HVPQ+ + + E   L  V   + +P+    ++   QD L    + T++DTF   D   
Sbjct: 413 NLHVPQSYQTKAEIQELCVVPRQIVSPQKNGPVMGIVQDTLCGITMFTQRDTFLRKDMMM 472

Query: 427 FSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMR-VYVNLTVKEKTYS 485
             LM     DG    ++P PAILKPV LWTGKQ+ S++I P  NM   +      EKT+ 
Sbjct: 473 NILMWVPDWDG----NIPEPAILKPVPLWTGKQMMSLII-PRINMEGKHFGHPDAEKTW- 526

Query: 486 NKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAH 545
                           M P D  V  ++ ELI+G L K T+G+    G+    + ++G  
Sbjct: 527 ----------------MSPGDTRVIIQDGELIAGILSKGTVGSA-AGGIIHTTMNEHGPE 569

Query: 546 ATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNE 604
              G  N    +   W+ ++GFSIGI D      L  +    L +   +V ++  K  NE
Sbjct: 570 VAKGFFNGTQLVVNYWLLHNGFSIGIGDTVANAALLRRVDDHLRNGKEQVADIIAKAENE 629

Query: 605 GKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINIS 664
             L+  PG    +T E+ +   L++ REDAGK  +  L  +N+   M   GSKGS +NI 
Sbjct: 630 A-LEPSPGMTIKETFESYVGAALSKAREDAGKGGLAGLGKQNNARHMVYAGSKGSDVNIG 688

Query: 665 QMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMG 724
           QM ACVGQQ V G+R P GF  R+LPH+ +   E  ++GFV NS+  GL+  EFFFH MG
Sbjct: 689 QMAACVGQQLVEGKRIPYGFRFRTLPHYTKDDYEAESRGFVDNSYVRGLTPQEFFFHAMG 748

Query: 725 GREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           GREGL+DTAVKTA+TGY+ RRL+KA+ED+  +YD +VRN+ G +VQFLYG+DGMD A +E
Sbjct: 749 GREGLIDTAVKTAETGYIQRRLVKAMEDVMAKYDGTVRNSLGEVVQFLYGEDGMDGAKVE 808

Query: 785 GKSGEPL 791
            ++ E +
Sbjct: 809 KQALESM 815


>gi|389845820|ref|YP_006348059.1| DNA-directed RNA polymerase subunit A' [Haloferax mediterranei ATCC
           33500]
 gi|388243126|gb|AFK18072.1| DNA-directed RNA polymerase subunit A' [Haloferax mediterranei ATCC
           33500]
          Length = 976

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 280/723 (38%), Positives = 410/723 (56%), Gaps = 43/723 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++   F+ + D D   L +     RPE +I+T + VPP+  RPS+ +D  Q +E+D
Sbjct: 247 LMPSDIRDWFEDIPDDDLVTLGIDPERSRPEWMILTVLPVPPVTARPSITLDNGQRSEDD 306

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N    +              WE LQ  V  +I++++ G P +  +  RP
Sbjct: 307 LTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFIDNEISGTPPARHRSGRP 366

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+A  +T    V+
Sbjct: 367 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVATEMTQTMNVT 426

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
           + NI++ RQ ++NGP+ +PGA  +R PDG    +  K   +LA +++ G  V+RHL DGD
Sbjct: 427 ERNIDEARQYVRNGPESHPGANYVRRPDGRRLKVTEKNCEELAEKVELGWEVNRHLVDGD 486

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +V+FNRQPSLHRMSIM H   +MP++T R N  VC PYNADFDGDEMNMH  Q EEAR E
Sbjct: 487 IVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAE 546

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD-TFYDRAAFSLMCCYMGDGMDR 440
           A +LM VQ  + +P+ GE ++ + QD ++ ++L+T  +  F +  A  L+         R
Sbjct: 547 ARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTHDNPEFVETQALDLLRAT------R 600

Query: 441 VD-LPTPAILKP--VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
           VD LP PA      +  WTG+Q+FS L+    NM            +++K+  T      
Sbjct: 601 VDTLPEPAGEDEDGIPYWTGRQIFSELLPDDLNME-----------FTSKVGDT------ 643

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
                      V   + +L+ G + +  +G    + +  VL +DY    +   +N +A L
Sbjct: 644 -----------VSIVDGQLVEGTIDEDAVGAFGGE-IVDVLAKDYSKTRSRIFINEIASL 691

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
           + R I + G SIGIDD     E + +  + I   Y+     I+ Y  G+L+  PG    +
Sbjct: 692 AMRAIMHFGLSIGIDDESIPDEATAQVDEAIDAAYDKIQELIEIYEAGELESLPGRSVDE 751

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           TLE  I   L + R+ AG+         N  ++MS+ G++ S +N++QM  CVGQQ+V G
Sbjct: 752 TLEMKIMQRLGKARDSAGEIAEDHFAEDNPAVVMSKSGARASMLNLTQMAGCVGQQAVRG 811

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            R   G+ DR+L H+ +      A GFV NS+ +GL+  EFFFH MGGREGLVDTAV+T+
Sbjct: 812 ERINRGYEDRTLSHYQKGDLSADAHGFVENSYRAGLTPREFFFHAMGGREGLVDTAVRTS 871

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
            +GY+ RRLI AL +L  QYD SVR+  G IVQF +G+DG  P  +      P++ + + 
Sbjct: 872 KSGYLQRRLINALSELEAQYDGSVRDTSGTIVQFEFGEDGTSPVKVSSDDEMPIDVENIA 931

Query: 798 MKV 800
            +V
Sbjct: 932 DRV 934


>gi|353231921|emb|CCD79276.1| putative dna-directed RNA polymerase II largest subunit
           [Schistosoma mansoni]
          Length = 1900

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/700 (40%), Positives = 417/700 (59%), Gaps = 25/700 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL +FKRM+D DC  L    R   P+ +I T + VPP+ +RP+V+M G+  N++D+T +L
Sbjct: 227 VLEVFKRMSDEDCLSLGFDPRYARPDWMIATVLPVPPLCVRPAVVMYGATRNQDDLTHKL 286

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+ N  L+++     +A       + LQ  V   ++++V G+P ++Q + RPL    
Sbjct: 287 ADIIKANNQLRRDEQNGAAAHIIAEDIKMLQFHVTTMVDNEVPGLPKAIQKSGRPLKSIK 346

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
           QRLKGK GR RGNL GKRV+++ RTVI+ DPNL + +V +P  +A+ LTYPE V+  NI+
Sbjct: 347 QRLKGKAGRIRGNLMGKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPEIVTQFNID 406

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLEDGDVVLF 325
            L++ +QNG   YPGA+ I   +G    L  ++  +++ + L+ G IV+RH+ + D V+F
Sbjct: 407 HLQKLVQNG-TLYPGAKFIVRENGDRIDL--RYHPKVSDLTLQVGYIVERHMLNDDFVIF 463

Query: 326 NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
           NRQP+LH+MS+MCHR +++PW T R N SV +PYNADFDGDEMN+H+PQ+ E + E   L
Sbjct: 464 NRQPTLHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQL 523

Query: 386 MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPT 445
             V   + TP+  + ++   QD LT+   +T++D F +R+    +  Y+     R  +P 
Sbjct: 524 ARVSRLVITPQANKPVMGIVQDTLTAVNKMTQRDVFLNRSEMMNLLMYLPTWNGR--MPK 581

Query: 446 PAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
           PAI KP  LWTGKQLFS++I    N +R +     +E     K I              P
Sbjct: 582 PAIYKPQRLWTGKQLFSLVIPGRVNCIRTHSTHPEEEDIGPYKWI-------------SP 628

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  V   + +LISG L K TLG+G    ++ V L ++     +   N +  +   W+  
Sbjct: 629 GDTKVIVDDGDLISGILCKKTLGSGAGSLIHIVAL-EHHHDQVNMFFNNIQTVVNNWLLI 687

Query: 565 HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
            G +IGI D    +    +    I++  +     I + +   LQ  PG    QT E  + 
Sbjct: 688 EGHTIGIADTLYDQATRRQISGTITKAKDAVFEIIDQAHNYDLQPTPGNTLRQTFENSVN 747

Query: 625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
            ILN  R+  G     SL   N+  IM   GSKGS INISQ++ACVGQQ+V G+R P GF
Sbjct: 748 KILNDARDKTGSCAQRSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQNVEGKRIPFGF 807

Query: 685 IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
             R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA+TGY+ R
Sbjct: 808 RHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 867

Query: 745 RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           RLIKA+E + I+YD +VRN    ++Q  YG+DG+D  ++E
Sbjct: 868 RLIKAMESVMIKYDGTVRNQINQLIQLRYGEDGLDATHVE 907



 Score =  173 bits (438), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 147/519 (28%), Positives = 240/519 (46%), Gaps = 88/519 (16%)

Query: 790  PLNFDRLLMKVKAT--CPPAGQRYLSPQQVSEIVE---KQLAA------YGKESCSEA-- 836
            P N +RL+M  +      P  +  + P+QV E+V    K+L          KE+ + A  
Sbjct: 985  PCNINRLVMNAQKIFEIDPLSKTNIHPRQVVEMVRETCKRLIVVPGDDRLSKEANANATL 1044

Query: 837  FLNSL-RKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFS 895
             L+SL R     ++  +D ++ + E + W     +L EV                    +
Sbjct: 1045 LLSSLIRASLCAKKVIIDYRLSY-EALDW-----VLGEVR-------------------A 1079

Query: 896  RYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRI 955
            R++   +  G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN +KR 
Sbjct: 1080 RFQQAHIHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRP 1139

Query: 956  STPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
             TP +T  L      +A R   V  R+E T L ++  S  I       + V+  D E + 
Sbjct: 1140 KTPSMTIFLTGQAARDAERTKDVVARLEHTTLRKLVNSTYIYYDPDPQNTVVEEDREWVS 1199

Query: 1014 DAHLCINADIVKES-----------------------------------IVQTPKIKLKQ 1038
              +   + D+   S                                   I   P   LK 
Sbjct: 1200 TYYELPDFDVNAISSWMLRIEFTRKGMTGKKLSMEQIADKITRAFGNDLICHIPDDNLKL 1259

Query: 1039 -QHIKVLDFRKLEIFPPVDKSKIHFELYSL-----KNVLPMVIVKGIKTVERVVIA-EKE 1091
               I++++    + F   D +    E  +       N+L  + ++GI  + +V +   K 
Sbjct: 1260 VMRIRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKT 1319

Query: 1092 KEKRKV--KENGE---KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAA 1146
            ++K++V  K++G      ++ L  +GT L  V+    +D  +T SN I E+ + LGIEA 
Sbjct: 1320 QDKKRVVIKDDGSFDTVAEWMLETDGTCLMRVLAERDVDPVRTVSNDIVEIFEALGIEAV 1379

Query: 1147 RICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEK 1206
            R  I  E++  +   G  ++ RH+ LL D+MT +G ++ ITR G+ ++D   L   SFE+
Sbjct: 1380 RKAIECEMHHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARCSFEE 1439

Query: 1207 TADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            T D L  A+++   D + GVSE I++G    +GTG   +
Sbjct: 1440 TVDILMEAAIHSECDPMAGVSETIMLGQLARIGTGCFDL 1478


>gi|520517|gb|AAA50229.1| RNA polymerase II, largest subunit, partial [Ilyanassa obsoleta]
          Length = 1343

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 280/712 (39%), Positives = 426/712 (59%), Gaps = 30/712 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           I++   VL +FKR++D +  +L +     RP+ +I+T   VPP+ +RP+V+M GS  N++
Sbjct: 129 IVSAERVLEIFKRISDEESLMLGMDPRFARPDWMILTVFPVPPLPVRPAVVMFGSARNQD 188

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ   +  +++++ G+P ++Q + R
Sbjct: 189 DLTHKLADIVKANNQLRRNEQNGAAAHIIFEDSKMLQYHCSTLVDNEMPGLPRAVQKSGR 248

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL  KRV+++GRTVI+PDPNL++ +V +P  +A  LT+PE V
Sbjct: 249 PLKSVKQRLKGKEGRVRGNLMDKRVDFSGRTVITPDPNLRVDQVGVPRSIAHNLTFPELV 308

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI+ +++ ++ G + YPGA+ I   +G    L  +F  + + + L+ G  V+RH++D
Sbjct: 309 TPFNIDVMQERVRRGANVYPGAKYIIRDNGERIDL--RFHPKASDLHLQIGYKVERHMQD 366

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
            DVV+FNRQP+LH+MS+MCHR +++PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 367 NDVVIFNRQPTLHKMSMMCHRVKVLPWSTFRMNLSVTTPYNADFDGDEMNLHLPQSLETR 426

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E + L  V   + TP+    ++   QD LT+   +T++D F  RA    +  ++     
Sbjct: 427 AEIMNLCAVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLTRAQMMHLLMFLPTWDG 486

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
           R  +P PAI+KP  LWTGKQ+FS++I    N+          +T+S      +G++    
Sbjct: 487 R--MPQPAIIKPEPLWTGKQIFSLVIPGRVNVI---------RTHST---HPDGEDSGPY 532

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
           + + P D  V   + ELISG L K TLG  +   L  ++  + G          +  +  
Sbjct: 533 KWISPGDTKVLIEDGELISGILCKKTLGT-SAGSLVHIVFLEMGFEVAGELYGNIQTVVN 591

Query: 560 RWIGNHGFSIGIDDV----QPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
            W+   G SIGI D     Q   E+ +   K  ++  EV    I++ +  +L+  PG   
Sbjct: 592 NWLLIEGHSIGIGDTIADQQTYHEIQETIRKAKADVIEV----IEKAHNDELEPTPGNTL 647

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            QT E  +  ILN  R+  G     SL   N+   M   GSKGS INISQ++ACVGQQ+ 
Sbjct: 648 RQTFENQVNRILNDARDKTGSKAQKSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQNA 707

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVK
Sbjct: 708 EGKRIPFGFRYRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVK 767

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           TA+TGY+ RRLIKA+E + ++YD +VRN    +VQ  YG+DG+D  ++E +S
Sbjct: 768 TAETGYIQRRLIKAMESVMVKYDGTVRNQVEQLVQLGYGEDGLDACHVEFQS 819



 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 177/374 (47%), Gaps = 61/374 (16%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++E      +    +R++  +   G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T 
Sbjct: 974  LSEDAFNWLLGEIETRFQQAQAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTL 1033

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVM-- 996
            GVPR+KEIIN +K+  TP +T  L      +A +   V  R+E T L +V  +  I    
Sbjct: 1034 GVPRLKEIINISKKPKTPSLTVYLNGPAARDAEKCKDVLCRLEHTTLRKVTANTAIYYDP 1093

Query: 997  ------------------------TSRLASIV--IALDMETIQDAHL------------- 1017
                                     SR++  +  I LD + + D  L             
Sbjct: 1094 DPMNTVIVEDQEWVSIYYEMPDFDASRISPWLLRIELDRKRMTDKKLTMEQISEKITAGF 1153

Query: 1018 -----CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NVL 1071
                 CI  D   E +V   +I +     K+ D  ++     VDK +    L  ++ N+L
Sbjct: 1154 GDDLNCIFNDDNAEKLVLRIRI-MNSDDSKMQDEEEV-----VDKMEDDVFLRCIESNLL 1207

Query: 1072 PMVIVKGIKTVERVVI---AEKEKEKRKVKENGEKK---KYRLLVEGTGLQAVMGAEGID 1125
              + ++GI+ + +V +      +K++  + E GE K   ++ L  +G+ L  V+    +D
Sbjct: 1208 SDMTLQGIEAIAKVYMHLPTTDDKKRIHITEEGEFKAVAEWILETDGSSLMKVLSERDVD 1267

Query: 1126 GCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLG 1185
              +T +N I EV  TLGIEA R  I  E+   +   G  ++ RH+ LL D+MT +G ++ 
Sbjct: 1268 PVRTYTNDIVEVFATLGIEAVRKAIEREMVHVISFDGSYVNYRHLALLCDVMTAKGHLMA 1327

Query: 1186 ITRFGIQKMDKSVL 1199
            ITR GI + +   L
Sbjct: 1328 ITRHGINRQETGAL 1341


>gi|395836506|ref|XP_003791195.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Otolemur
           garnettii]
          Length = 1970

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/734 (39%), Positives = 430/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQIGYKVERHMCD 452

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 907 ----ATLKPSNKAF 916



 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473


>gi|321259651|ref|XP_003194546.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus gattii
           WM276]
 gi|317461017|gb|ADV22759.1| DNA-directed RNA polymerase II largest subunit, putative
           [Cryptococcus gattii WM276]
          Length = 1786

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/712 (41%), Positives = 418/712 (58%), Gaps = 39/712 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNEN 141
           ++P  V  + K++T  D  ++ L+    RP+ +I+T + VPP A+RPS+ +DG +  +E+
Sbjct: 217 VSPGEVYNILKKITPEDLHIMGLNADYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSED 276

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAG--WETLQVEVAQYINSDVRGVPFSMQVA 199
           D+T +L +II+ N  +++  +EA     S+    ++ LQ  V  Y+++D+ G+P   Q  
Sbjct: 277 DLTYKLSQIIKFNGVVRR--MEAEGVPPSVVNEQFDLLQYHVCTYMDNDIAGLPRDQQKG 334

Query: 200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            R +     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ +V +P  +A  LTYPE
Sbjct: 335 GRAIKAIRARLKGKEGRMRGNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPE 394

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQ-LAVELKSGCIVDRHL 317
           RV+ +NI  L+  + NGP  YPGAR   Y   T   +  K+R     + L+ G IV+RHL
Sbjct: 395 RVTPYNIVYLQTLVNNGPATYPGARY--YVKDTGERVDLKYRKSGEPISLQFGWIVERHL 452

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
           +DGD VLFNRQPSLH+MS+M HR ++M + T R N SV +PYNADFDGDEMN+HVPQ+EE
Sbjct: 453 KDGDYVLFNRQPSLHKMSMMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEE 512

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--G 435
            R E   +  V   + +P+  + ++   QD L      T +D F D      +  ++   
Sbjct: 513 TRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHILLWLPEW 572

Query: 436 DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
           DG     +P PAI KP  +WTGKQL S+ I P       +N+T K     + +  T  DE
Sbjct: 573 DG----SIPPPAIFKPKPMWTGKQLLSMTI-PKG-----INITYKNNEKPSPIDVT--DE 620

Query: 496 EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
            + IE            N EL+ G + K   G+ N +GL  V+ R+ G  A     + + 
Sbjct: 621 NVLIE------------NGELVHGTIVKNMAGSAN-NGLVHVIFRELGHVAARDFFSAVQ 667

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           ++   W+ ++GFS+GI D    K         + E  E     ++E    +++ KPG   
Sbjct: 668 RVVNYWLLHYGFSVGIGDTIVDKATMAGITNRMVEAKEAVQKLVQEAEANRMKPKPGMTI 727

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            +TLEA I   LN+ R+  GK    +L   N+   M   G+KGS INISQM   VGQQ V
Sbjct: 728 RETLEASIAAELNKARDWTGKTTQDNLKADNNVKQMVVSGAKGSFINISQMSGVVGQQFV 787

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R   GF  RSLPHF +    P ++GFV NS+  GL+  EF+FH MGGREGL+DTAVK
Sbjct: 788 EGKRIAFGFRHRSLPHFSKDDYGPESRGFVENSYLRGLTPQEFWFHAMGGREGLIDTAVK 847

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           TA+TGY+ RRL+KA+EDL + YD +VRN+   +VQFLYG+DGMD A ME +S
Sbjct: 848 TAETGYIQRRLVKAMEDLKVAYDGTVRNSVNEVVQFLYGEDGMDGAAMEKQS 899



 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/386 (32%), Positives = 199/386 (51%), Gaps = 45/386 (11%)

Query: 902  VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIIT 961
            V A   +G + AQSIGEP TQMTL TFH+AGVAS ++T GVPR+KEIIN A  I TP + 
Sbjct: 1074 VNAAEMVGTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPRLKEIINVAVNIRTPALN 1133

Query: 962  AEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCI 1019
              L  E +  E  A  +  ++  T L  +  +++I    +L S  I  D + + DA   I
Sbjct: 1134 VYLDPEYSKTEEDAHQIMRKLTYTRLRDITATVEIFYDPKLDSTDIEEDKDFV-DAFFAI 1192

Query: 1020 NADIVKESIVQTPKIKLKQQHIKVLD--FRKLEIFPPVDKS--KIHFELYSLKNVLPMVI 1075
              + ++  +     ++L+    KVL+  +   +I   +  +  K  F ++S  N   +VI
Sbjct: 1193 PDEDIRLELHSPWLLRLELDRAKVLEGGYEMSQIVDAIADTVGKDVFVIHSEDNAPKLVI 1252

Query: 1076 ---------------------------------VKGIKTVERVVIAEKEKEKRKVKENGE 1102
                                             + GI  + RV I+E ++    + +NGE
Sbjct: 1253 RIRVVAEKEDEELLGDEDMFLKRIEGTLLDQVELGGITGITRVFISEGKQ--VVISQNGE 1310

Query: 1103 ---KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMK 1159
               +K++ L  +G  L+ VM  +G++  +T SN+ +EV +TLGIEAAR  +  E+N  ++
Sbjct: 1311 YDQQKEWFLETDGINLKEVMAVDGVNAFRTYSNNCYEVYETLGIEAARNALYKELNGVIE 1370

Query: 1160 AHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGR 1219
              G  ++ RH+ LL DLM  +G ++ ITR GI + D   L  A+FE+T + L  A+  G 
Sbjct: 1371 MGGSYVNYRHLALLCDLMCSKGALMSITRHGINRTDAGALSRAAFEETVEILLEAAAVGD 1430

Query: 1220 DDRIEGVSECIIMGIPMPLGTGILKI 1245
             D  +GV+E +++G   P+GTG   +
Sbjct: 1431 IDDCKGVAENVLLGQMAPMGTGAFDV 1456


>gi|410670214|ref|YP_006922585.1| DNA-directed RNA polymerase subunit alpha [Methanolobus
           psychrophilus R15]
 gi|409169342|gb|AFV23217.1| DNA-directed RNA polymerase subunit alpha [Methanolobus
           psychrophilus R15]
          Length = 880

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 274/701 (39%), Positives = 404/701 (57%), Gaps = 27/701 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  +   F+ + D D +VL +   S RPE  I+T + VPP+ +RPS+ ++  Q +E+D
Sbjct: 175 LTPTEIRDRFENIPDEDVKVLGMDPSSARPEWTILTVLPVPPVTVRPSITLESGQRSEDD 234

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N   Q+              WE LQ  V  + +++V GVP +  +  RP
Sbjct: 235 LTHKLVDIIRINQRFQENRDAGAPQLIIEDLWELLQYHVTTFFDNEVSGVPPARHRSGRP 294

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTV+SP+PNL I EV +P  +A  +T PERV+
Sbjct: 295 LKTLTQRLKGKEGRFRGSLSGKRVNFSARTVVSPEPNLSINEVGVPFEIAHQMTIPERVT 354

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
             NI+ LR  +  G + +PGA  +   DG    +    + +LA ++++G +V+R L DGD
Sbjct: 355 TRNIDLLRMYVLRGSEVHPGANYVIREDGRRIRVSEINKEELAEKIQTGWVVERQLMDGD 414

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +VLFNRQPSLH+MSIM HR +++P++T R N +VC PYNADFDGDEMNMHV QTEE+R E
Sbjct: 415 IVLFNRQPSLHKMSIMAHRVKVLPYKTFRLNPAVCPPYNADFDGDEMNMHVLQTEESRAE 474

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR-KDTFYDRAAFSLMCCYMGDGMDR 440
           A +LM VQ N+ +P+ G  ++    D ++  FL+TR +++    AA  L+        D 
Sbjct: 475 ASILMQVQENILSPRFGGPIIGGIHDHISGLFLLTRNENSITKTAALELL-----RKSDI 529

Query: 441 VDLPTPAILKP--VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
             LP P+        LW GKQ+FS ++     +     +  K  T   +           
Sbjct: 530 RVLPEPSSYTADGEPLWNGKQIFSQILPKGLYLEFPAQVCFKCDTCKKR----------- 578

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
               C  + +V   N E+I G + +  +G   K  +   ++++YG  A +  ++   +L+
Sbjct: 579 ---DCEYEAYVVIENGEMIQGTIDEQAIG-AFKGKILDKVVKEYGTEAGAKFVDDFTRLA 634

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
            R +   G S GI D         +   L++E  E     I+ Y   +L+  PG    +T
Sbjct: 635 IRGVMKTGLSFGISDEDIPTTAKMQIANLLNEAEENVQRLIQAYEAKELEALPGRTMDET 694

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
           +E  I   L + R+  G      L   NS +IM++ G++GS +N++QM ACVGQQ+V G 
Sbjct: 695 IEMKIMQELGKARDQTGNIAGRQLGLENSAVIMAKSGARGSMLNLTQMAACVGQQAVRGE 754

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R   G+  R+LPHF +      A+GFV  S+ SGL+ TE+FFH +GGREGLVDTAV+T+ 
Sbjct: 755 RIRRGYNGRTLPHFDKGDLGADARGFVKASYKSGLNPTEYFFHAIGGREGLVDTAVRTSQ 814

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           +GY+ RRL+ AL+DL +QYD SVR   G IVQF YG+DG+D
Sbjct: 815 SGYLQRRLVNALQDLEVQYDGSVRETRGVIVQFKYGEDGID 855


>gi|330038381|ref|XP_003239581.1| DNA-directed RNA polymerase II largest chain [Cryptomonas
           paramecium]
 gi|327206505|gb|AEA38683.1| DNA-directed RNA polymerase II largest chain [Cryptomonas
           paramecium]
          Length = 1452

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/737 (39%), Positives = 430/737 (58%), Gaps = 45/737 (6%)

Query: 83  TYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSN 139
           T IL+   +  +FKR++D DC  + L+    RP+ +I+T + VPP +IRPS+I D +   
Sbjct: 179 TRILSAERIYEIFKRISDQDCNKIGLNPKLARPDWMILTVLPVPPPSIRPSIIFDSTSRA 238

Query: 140 ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-V 198
           E+D+T +L  II+ N SL   ++              LQ  V  Y+++    +  S+Q  
Sbjct: 239 EDDLTYKLSDIIRCNKSLSHLIISYAPLQLINEQINLLQYHVGSYMDNTTPNLAKSIQKT 298

Query: 199 ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RP+    QRL+GK+GR RGNL GKRV+++ RTVI+PDPN+ + E+ IP  +A  LTYPE
Sbjct: 299 GRPIKSIRQRLQGKEGRIRGNLMGKRVDFSARTVITPDPNILLEEIGIPWNVALNLTYPE 358

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHL 317
            V++ N + ++Q +QNGP +YPGA+ +   DGT   L  ++  +L+ V L+ G  V+RHL
Sbjct: 359 IVTNFNYQYMKQLVQNGPTRYPGAKYVIKNDGTRLDL--RYVKKLSNVYLEIGYQVERHL 416

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            DGDV+LFNRQPSLH+MS+M H  +IM + T R N S   PYNADFDGDEMN+H+PQT E
Sbjct: 417 RDGDVILFNRQPSLHKMSMMSHIVKIMDYSTFRMNLSATTPYNADFDGDEMNLHLPQTLE 476

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
           + +E L L+ V   + + ++ + ++   QD L  +FL+T+KD F D    +++  ++ DG
Sbjct: 477 STSELLNLLTVSKCILSQQSNKPVIGIVQDSLIGAFLLTQKDVFMDMCTLNMLLIHI-DG 535

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
            + +  P P  +KP  LWTGKQ+FS LI P       VNLT     YS+           
Sbjct: 536 CNSI--PFPTFIKPNILWTGKQVFS-LILPS------VNLTRNCINYSDT---------- 576

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
             ET    D  V   N +LI G + K + G+ +  G+  V  ++YG   T+  +++   +
Sbjct: 577 --ETNFSQDNKVIILNGQLICGVIDKRSAGSSS-GGIIHVCWKEYGPEKTAFFISQFQWM 633

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISE-NYEVCNVKIKEYNEGKLQLKPGCDAA 616
              W+   GFS+G++D    K ++ K   +I +   EV  +  K+      ++ P  ++ 
Sbjct: 634 INHWLLLCGFSVGVEDTIANKIINLKVVSIIKKAKNEVRYILRKKVTSA--EIYPDKNSD 691

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           +  E  I  ILN  R+ AG      L  +N+   M   GSKG+ INISQ++ACVGQQ+V 
Sbjct: 692 EIFECQINKILNTARDQAGSIVQKLLSDKNNIKKMVISGSKGNFINISQIIACVGQQNVN 751

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R  + F  R LPHF      P  KGFV NS+ SGL+  EFFFH MGGREGL+DTA+KT
Sbjct: 752 GKRIDSAFGSRCLPHFLFDDNGPETKGFVQNSYSSGLNPDEFFFHAMGGREGLIDTAIKT 811

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           ++TGY+ RRL K +ED+ ++YD +VRNA   I++F YG+D +D   +E    +PLNF  +
Sbjct: 812 SETGYIQRRLSKIMEDIVVEYDLTVRNAQKEILEFFYGEDSIDAVFLE---NQPLNFANI 868

Query: 797 L---------MKVKATC 804
                     M VK+ C
Sbjct: 869 TYEELRISYKMDVKSPC 885



 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 126/426 (29%), Positives = 202/426 (47%), Gaps = 58/426 (13%)

Query: 872  EEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 931
            + V +K     EK   +  + C   +R   +  G  +G I +QSIG+P TQMTL TFH+A
Sbjct: 1020 KSVIYKHKFTKEKFSWILNEICL-YFRKSIISPGEMVGMISSQSIGQPATQMTLNTFHYA 1078

Query: 932  GVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVA 989
            GV++ N+T G+PR+KEIIN  K   TP +T  +  E N +    + ++  +E   L  + 
Sbjct: 1079 GVSAKNVTLGIPRLKEIINVLKITKTPSLTVYIKKEYNFSYEKVKYLQQFLEFVTLKDMM 1138

Query: 990  KSI----------------------------KIVMTSRLASIV--IALDMETIQDAHLCI 1019
             SI                            +++ T+ + + V  I L      D +L +
Sbjct: 1139 SSISFFYDPDPFLTICSTDRNVIKQYFEISDQVLETTHIGTWVMRIILYKNKFIDKNLSL 1198

Query: 1020 NADIVKESIVQTPKI--KLKQQHIKVLDFRKLEIFPPVDKSK---------IHFELYSLK 1068
            N  I K      P +   L      + +  + +IF P +K K           F+  SL+
Sbjct: 1199 NQIIEKIKRKIKPLVLFTLNSDENNIPNLIRFKIFWPDNKWKKKNMKQHQLYTFDYSSLE 1258

Query: 1069 -------NVLPMVIV---KGIKTVERVVIAEKEKEKRKVKENGE---KKKYRLLVEGTGL 1115
                   + L M I     G   ++++ I +K      V +N +     ++ L  EG  L
Sbjct: 1259 IQYLKKMSFLMMSINLKDHGTSNIKKIFI-QKTNVNNTVIKNDQLVGSSEFILDTEGIDL 1317

Query: 1116 QAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLAD 1175
            + V+    +D  +T SN I E  +T GIEAAR  +I EI   +   G  ++ RH+ LLAD
Sbjct: 1318 KYVLNCNIVDPTRTVSNDILETFKTFGIEAARKILIKEIKNLISFDGSYVNFRHIFLLAD 1377

Query: 1176 LMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIP 1235
            +MT  G+++ ITR GI K++   +  +SFE+T D  + ++V G  D I+GVS  I++G  
Sbjct: 1378 IMTHGGKLMSITRHGISKIEIGPIAKSSFEETVDIFYQSAVFGIYDNIKGVSANIMVGNL 1437

Query: 1236 MPLGTG 1241
            + +GTG
Sbjct: 1438 LSVGTG 1443


>gi|268553547|ref|XP_002634760.1| C. briggsae CBR-RPB-1 protein [Caenorhabditis briggsae]
 gi|60393735|sp|P35074.2|RPB1_CAEBR RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
           Short=RNA polymerase II subunit B1; AltName:
           Full=DNA-directed RNA polymerase III largest subunit
          Length = 1853

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/695 (41%), Positives = 416/695 (59%), Gaps = 24/695 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL +FK++TD D  V+ +     RPE +I T + VPP+A+RP+V+  GS  N++D+T +L
Sbjct: 215 VLEVFKQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKL 274

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+TN  LQ+      +A         LQ  VA  +++ + G+P + Q   RPL    
Sbjct: 275 SDIIKTNQQLQRNEANGAAAHVLTDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIK 334

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
           QRLKGK+GR RGNL GKRV+++ RTVI+ DPNL I  V +P  +A+ LT+PE V+  N++
Sbjct: 335 QRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVD 394

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL++ +  G  +YPGA+ I   +G ARV          + L+ G  V+RH++DGD+++FN
Sbjct: 395 KLQELVNRGDTQYPGAKYIIRENG-ARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFN 453

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQP+LH+MS+M HR +I+PW T R N SV +PYNADFDGDEMN+H+PQ+ E R E   + 
Sbjct: 454 RQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIA 513

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTP 446
            V   L TP+  + ++   QD L +  ++T++D F D      +  Y+     +V  P P
Sbjct: 514 MVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDIFIDWPFMMDLLMYLPTWDGKV--PQP 571

Query: 447 AILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 505
           AILKP  LWTGKQ+FS++I  + N +R +      E +   K I + GD ++ IE     
Sbjct: 572 AILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWI-SPGDTKVLIE----- 625

Query: 506 DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
                  + EL+SG +   T+G    + L+ V L + G    +   + +  +   W+   
Sbjct: 626 -------HGELLSGIVCSKTVGKSAGNLLHVVAL-ELGHEIAANFYSHIQTVINAWLLRE 677

Query: 566 GFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
           G +IGI D +  +    D +  +     +V +V  K +N+  L+  PG    QT E  + 
Sbjct: 678 GHTIGIGDTIADQSTYLDIQNTIRKAKQDVVDVIEKAHND-DLEPTPGNTLRQTFENKVN 736

Query: 625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
            ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P GF
Sbjct: 737 QILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGF 796

Query: 685 IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
             R+LPHF +    P +KGFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA+TGY+ R
Sbjct: 797 RHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 856

Query: 745 RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           RLIKA+E + + YD +VRN+   +VQ  YG+DG+D
Sbjct: 857 RLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLD 891



 Score =  166 bits (421), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 129/401 (32%), Positives = 195/401 (48%), Gaps = 52/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R++    + G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN +K+
Sbjct: 1068 TRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQ 1127

Query: 955  ISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIA----- 1006
            + TP +T  L      D E A  V+  ++E T L +V  +  I       + VIA     
Sbjct: 1128 LKTPSLTVFLTGAAAKDPEKAKDVL-CKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEW 1186

Query: 1007 -----------------------LDMETIQDAHLCIN--ADIVKESIVQTPKIKLKQQHI 1041
                                   LD + + D  L +   AD +     Q         + 
Sbjct: 1187 VSIFYEMPDHDLTRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGQDVHTIYTDDNA 1246

Query: 1042 KVLDFRKLEIF----------PPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEK 1090
            + L FR L I             VDK +    L  ++ N+L  + ++GI  + +V + + 
Sbjct: 1247 EKLVFR-LRIAGEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQP 1305

Query: 1091 EKEKRK----VKENGEKK--KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
              + +K      E G K    + L  +GT L  V+    ID  +T SN I E+ + LGIE
Sbjct: 1306 NTDDKKRIIITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIE 1365

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            A R  I  E++  +   G  ++ RH+ LL D+MT +G ++ ITR GI + +   LM  SF
Sbjct: 1366 AVRKSIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSF 1425

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T D L  ASV+   D ++GVSE I++G     GTG   +
Sbjct: 1426 EETVDILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDL 1466


>gi|397135820|gb|AFO11405.1| RNA polymerase I, partial [Saccharomycopsis capsularis]
          Length = 871

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 298/783 (38%), Positives = 453/783 (57%), Gaps = 42/783 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  +L +FK ++D D ++L  +    RPE L++T + VPP  +RPS+  + +   E+
Sbjct: 14  LLTPSEILNVFKHISDEDAQLLGFNIDYARPEWLVLTVLPVPPPPVRPSIAFNETARGED 73

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N ++Q+  ++ + A         LQ  VA Y+++D+ G P ++Q + R
Sbjct: 74  DLTYKLAEILKANINVQKLEMDGSPAHVITEFESLLQYHVATYMDNDIAGQPVALQKSGR 133

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           P+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +P  +AR LTYPE V
Sbjct: 134 PIKSIRARLKGKEGRVRGNLMGKRVDFSARTVISGDPNLDLDQVGVPRSIARTLTYPEIV 193

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           + +NI +L + ++NGP+++PGA+ +   D   R+     +    ++L+ G  V+RHL D 
Sbjct: 194 TPYNIHRLTEYVRNGPNEHPGAKYV-IRDTGDRIDLRYHKRAGDIQLQYGWKVERHLIDE 252

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+ E R+
Sbjct: 253 DPVLFNRQPSLHKMSMMAHRVKVMPFSTFRINLSVTSPYNADFDGDEMNLHVPQSHETRS 312

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           E   L  V   + +P++ + ++   QD L     +T KD F +      +C ++ D    
Sbjct: 313 ELKNLAAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLKDIFIEYDQVMNICYWIKDWNGI 372

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           V  P P ILKP  LWTGKQ+ S+ I    N+     +  +EKT                 
Sbjct: 373 V--PQPTILKPKPLWTGKQVLSMGIPEGINL-----IRFEEKT----------------T 409

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
            + P D  +   N E++ G + K T+G+ +  GL   + R+ G    +     + K+   
Sbjct: 410 YLSPQDDGMLIVNGEIMFGVVNKKTVGS-SAGGLIHTVFREKGHKVCAQLFGNIQKIVNY 468

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           W+ ++GFSIGI D    K    +    I+E  +     I + +  +LQ +PG    +  E
Sbjct: 469 WLLHNGFSIGIGDTIADKTTMTRITTTINEAKQKVQEVILDAHANRLQPEPGMTLREAFE 528

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
           A +  +LN+ R+D GK    SL   N+   M   GSKGS INISQM ACVGQQ V G+R 
Sbjct: 529 ANVAQLLNKARDDVGKYSEKSLKDSNNVKQMVISGSKGSFINISQMSACVGQQMVEGKRI 588

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
           P GF DR+LPHF +    P +KGF+ NS+  GL+  EFFFH M GREGL+DTAVKTA+TG
Sbjct: 589 PFGFADRTLPHFTKDDFSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 648

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           Y+ RRL+KALED+++ YD +VRN+ G ++QF+YG+DG+D   +E    +PL+       +
Sbjct: 649 YIQRRLVKALEDITVHYDGTVRNSTGTVLQFIYGEDGLDGTQVE---SQPLD------SL 699

Query: 801 KATCPPAGQRY-LSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFV 859
            A+      RY +     S++++  L  YG +   +A    L+   + + ++L K   F+
Sbjct: 700 PASEETFENRYKIDLMDSSKMIKPSLIEYGDDIRGDA---ELQNMLDEEYEQLRKDRLFL 756

Query: 860 EDI 862
            ++
Sbjct: 757 REV 759


>gi|110669614|gb|ABG81902.1| RNA polymerase II largest subunit [Canoparmelia caroliniana]
          Length = 1016

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 293/707 (41%), Positives = 424/707 (59%), Gaps = 36/707 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS--NE 140
           + P   L +F+ ++  D + + LS    RPE +IIT + VPP  +RPS+ +DG      E
Sbjct: 135 ITPQMALNIFRHISTEDIKRIGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRGE 194

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA- 199
           +D+T +L  II+ N ++++   E + A       + LQ  VA Y+++D+ G P ++Q + 
Sbjct: 195 DDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSG 254

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYPE 
Sbjct: 255 RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPET 314

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI+KL Q ++NGP+++PGA+ +   D   R+     +    + L+ G  V+RH+ D
Sbjct: 315 VTPYNIQKLHQLVKNGPNEHPGAKYV-IRDTGERIDLRHHKRAGEISLQYGWKVERHIVD 373

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R
Sbjct: 374 GDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 433

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V  N+ +P+    L+   QD L   + + R+D F  +     +  ++ D  D
Sbjct: 434 AEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPD-WD 492

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
            V +P PAI+KP+ +WTGKQ+ S++I    N                 L+R  G EE   
Sbjct: 493 GV-IPQPAIVKPLAMWTGKQILSLVIPTGLN-----------------LLR--GSEE--- 529

Query: 500 ETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
               P ND  +     EL+ G L K T+G  +  GL  ++  + G  A     N    + 
Sbjct: 530 -GFSPLNDDGLLISGGELMYGLLAKKTVG-ASGGGLIHIVFNEKGPEAAMNFFNGAQTVV 587

Query: 559 ARWIGNHGFSIGIDDVQPKKE-LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+ ++GFSIGI D  P +  +   +  + ++  EV  +  +   E +L+  PG +  +
Sbjct: 588 NYWLLHNGFSIGIGDTIPDRHTIQQIENAVNNQKAEVLEI-TRSATENELESLPGMNVRE 646

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E+ ++  LN+ R+DAG     SL   N+   M++ GSKGS INISQM A VGQQSV  
Sbjct: 647 TFESKVSKALNKARDDAGTVTEKSLKDLNNAPQMARSGSKGSTINISQMTAVVGQQSVEA 706

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P +KGFV NS+  GL+ TEFFFH M GREGL+DTAVKTA
Sbjct: 707 KRIPFGFKYRTLPHFTKDDYSPESKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTA 766

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           +TGY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D A +E
Sbjct: 767 ETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGAYIE 813


>gi|21228373|ref|NP_634295.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Go1]
 gi|452210796|ref|YP_007490910.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Tuc01]
 gi|20906843|gb|AAM31967.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Go1]
 gi|452100698|gb|AGF97638.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Tuc01]
          Length = 880

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 279/703 (39%), Positives = 411/703 (58%), Gaps = 29/703 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  +   F+ + D D  V+ +   + RPE +I+T + VPP+ +RPS+ ++  Q +E+D
Sbjct: 175 LTPTEIRDRFENIPDEDIRVVGMDPKNARPEWMILTVLPVPPVTVRPSITLESGQRSEDD 234

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N   Q+              WE LQ  V  + ++ V G+P +  +  RP
Sbjct: 235 LTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQYHVTTFFDNSVSGIPPARHRSGRP 294

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDPNL I EV +P+ +A+ILT P  V+
Sbjct: 295 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSINEVGVPMPIAKILTMPAVVT 354

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
             NIE+L+  ++NG D +PGA  +   DG    +    +  LA +L+ G  V+R L+DGD
Sbjct: 355 PRNIEQLKVYVRNGEDIHPGANYVFRSDGRRIKVTNMNKEDLAEKLEFGWTVERQLKDGD 414

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
            VLFNRQPSLH+MSIM H  +++P +T R N +VC PYNADFDGDEMNMH  QTEE+R E
Sbjct: 415 TVLFNRQPSLHKMSIMAHSVKVLPNKTFRLNPAVCPPYNADFDGDEMNMHALQTEESRAE 474

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
           A +LM VQ N+ +P+ G  ++    D ++  FL+TR   F +R + S     +       
Sbjct: 475 AKILMQVQENILSPRFGGPIIGGIHDHISGLFLLTR---FENRIS-SFDAYDLLRKSSAR 530

Query: 442 DLPTPA----ILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
            LP PA      KP   WTGKQ+FS ++    N       + +  ++ +   + E     
Sbjct: 531 SLPEPAGHDEYGKP--YWTGKQIFSQILPEGLN----AEFSAQVCSHCDTCKKEE----- 579

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
                CPND +V  R+ +LI+G + +A +G   K  +   ++++ G  A +  ++ + KL
Sbjct: 580 -----CPNDAYVVIRDGKLITGTVDEAAIG-AFKGKIQDRIIKEIGPEAGARFVDDMTKL 633

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
           + R I   G S GI D    KE   +  ++++E  +     IK Y   +L   PG    +
Sbjct: 634 AIRAIMRTGLSFGIADEDIPKEARIQINEVLTEAEDAVQNLIKSYINKELDPLPGRTLDE 693

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T+E  I   L + R+  G      +   NS +IM++ G++GS +N++QM ACVGQQ+V G
Sbjct: 694 TIEMSIMQKLGKARDKTGNIADSHMGLENSAVIMARSGARGSILNLTQMAACVGQQAVRG 753

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            R   G+  R+LPHF        A GFV  S+ SGL+ TE+FFH +GGREGLVDTAV+T+
Sbjct: 754 ERIRRGYAGRTLPHFLEGDLGSDAHGFVKASYKSGLNPTEYFFHAIGGREGLVDTAVRTS 813

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDP 780
            +GY+ RRL+ AL+DL +QYD +VR+  G +VQF YG+DG++P
Sbjct: 814 QSGYLQRRLVNALQDLEVQYDLTVRDTRGVLVQFKYGEDGINP 856


>gi|120561199|gb|ABM26985.1| RNA polymerase II largest subunit, partial [Trichophyton rubrum]
          Length = 1015

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 303/718 (42%), Positives = 421/718 (58%), Gaps = 46/718 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QSN 139
           + P   L +F+ +++ D  ++ LS    RPE +IIT + VPP  +RPSV++ GS   Q  
Sbjct: 131 ITPQMALTIFRNISEEDVRLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGTGQRG 190

Query: 140 ENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVPF 194
           E+D+T +L  II+ N ++ +   E +       F+SL     LQ  VA Y+++D+ G+P 
Sbjct: 191 EDDLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESL-----LQYHVATYMDNDIAGIPQ 245

Query: 195 SMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           +MQ + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +PI +A+ 
Sbjct: 246 AMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQT 305

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY----GKFRNQLAVELKS 309
           LTYPE V+ +NI +L Q + NGPD +PGAR +    G    L     G  RN L    + 
Sbjct: 306 LTYPEVVTPYNIHRLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFL----QW 361

Query: 310 GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMN 369
           G  V+RHL DGD +LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMN
Sbjct: 362 GWKVERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMN 421

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +HVPQ+EEAR E   L  V  N+ +P+    L+   QD L   + I R+D F  +     
Sbjct: 422 LHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMN 481

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           +  ++ D  D V LP PAILKP   W+GKQ+ S+++    N                 L+
Sbjct: 482 VLLWVPD-WDGV-LPQPAILKPRPRWSGKQMISMVLPSGLN-----------------LL 522

Query: 490 RTEGDEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
           R + D+    E   P  DG V     EL+ G   K T+G  +  G+   +  +YG  A  
Sbjct: 523 RIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVG-ASGGGIVHTIFNEYGPDAAM 581

Query: 549 GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
              N    +   W+ ++GFSIGI D  P  E   K    +    E  +       E  L+
Sbjct: 582 SFFNGAQAVVNYWLLHNGFSIGIGDTIPDLETIQKIENAVRVRKEEVDSITASATENTLE 641

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
             PG +  +T E+ ++  LN  R++AG A   SL   N+ + M++ GSKGS INISQM A
Sbjct: 642 ALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTA 701

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            VGQQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREG
Sbjct: 702 VVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREG 761

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           L+DTAVKTA+TGY+ R+L+KALE++ ++YD +VRN+ G IVQFLYG+DG+D   +E +
Sbjct: 762 LIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIVQFLYGEDGLDGQCIENQ 819


>gi|397135872|gb|AFO11431.1| RNA polymerase I, partial [Metschnikowia bicuspidata]
          Length = 872

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/715 (40%), Positives = 432/715 (60%), Gaps = 45/715 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +LNP+ +L +F+ ++  DC+ L  +E   RPE ++IT + VPP  +RPS+  + +   E+
Sbjct: 14  LLNPLEILSVFRHISAEDCQKLGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGED 73

Query: 142 DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  I++ N ++Q+  ++ +     S F++L     LQ  VA Y+++D+ G P ++
Sbjct: 74  DLTFKLADILKANINVQRLEIDGSPQHVISEFEAL-----LQFHVATYMDNDIAGQPQAL 128

Query: 197 Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q   RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +AR L+
Sbjct: 129 QKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLS 188

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
           YPE V+ +NI+KL + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+
Sbjct: 189 YPEVVTPYNIQKLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVE 246

Query: 315 RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
           RHL D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 247 RHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 306

Query: 375 TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
           + E R E   +  V   + +P++ + ++   QD L     +T +D+F  Y++    L   
Sbjct: 307 SPETRAEMSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDSFIEYEQVMNMLYWI 366

Query: 433 YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
              DG+    +P PA+ KP  LW+GKQL S+ I    +++ +                  
Sbjct: 367 PNWDGV----IPPPAVFKPKPLWSGKQLLSMAIPKGIHLQRF------------------ 404

Query: 493 GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
             ++ R + + P D  +   + E+I G + K T+G     GL   ++R+ G    +   +
Sbjct: 405 --DDGR-DMLSPKDLGMLVVDGEIIFGVVDKKTVG-ATGGGLIHTVMREKGPQVCAQLFS 460

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
            + K+   W+ ++GFSIGI D    K+        I E  +     I +  + KL+ +PG
Sbjct: 461 SIQKVVNYWLLHNGFSIGIGDTIADKDTMRDVTTTIQEAKQKVQEIIMDAQQNKLEPEPG 520

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
               ++ E  ++ ILN+ R+ AG++   +L   N+   M   GSKGS INISQM ACVGQ
Sbjct: 521 MTLRESFEHNVSRILNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 580

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           Q V G+R P GF DR+LPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DT
Sbjct: 581 QIVEGKRIPFGFGDRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           AVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D  ++E +S
Sbjct: 641 AVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDATSVEKQS 695


>gi|324120554|dbj|BAJ78668.1| RNA polymerase II largest subunit [Reticulitermes speratus]
          Length = 1732

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 288/747 (38%), Positives = 435/747 (58%), Gaps = 29/747 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           V  + + +TD +C +L +     RP+ +I+T + VPP+++RP+V+M GS  N++D+T +L
Sbjct: 214 VWEILRHITDEECYILGMDATFARPDWMIMTVLPVPPLSVRPAVVMYGSARNQDDLTHKL 273

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II++N  L +      +A       + LQ  VA  +++D+ G+P +MQ + +PL    
Sbjct: 274 ADIIKSNNELVRNEQAGAAAHVISENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIK 333

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ LT+PE V+  NI+
Sbjct: 334 ARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 393

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           K+++ ++ G  +YPGA+ I   +G  R+          + L+ G  V+RH+ DGD+V+FN
Sbjct: 394 KMQELVRRGNSQYPGAKYIVRDNG-ERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFN 452

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQP+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R E   + 
Sbjct: 453 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 512

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLP 444
                + TP+  + ++   QD LT+   +T++D F ++      LM   + DG     +P
Sbjct: 513 VTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDG----KMP 568

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR--IETM 502
            PAI+KP  LWTGKQ+FS++I  + NM          +T+S     T  DEE     + +
Sbjct: 569 QPAIMKPKPLWTGKQVFSLIIPGNVNMI---------RTHS-----THPDEEDDGPFKWI 614

Query: 503 CPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWI 562
            P D  V   + EL+ G L K TLG  +   L  + + + G          +  +   W+
Sbjct: 615 SPGDTKVMVEHGELVMGILCKKTLGT-SAGSLLHICMLELGHEVCGQFYGNIQTVVNNWL 673

Query: 563 GNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAV 622
              G SIGI D     +   +  K I +  E     I++ +  +L+  PG    QT E  
Sbjct: 674 LLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQ 733

Query: 623 ITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPN 682
           +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P 
Sbjct: 734 VNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPF 793

Query: 683 GFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYM 742
           GF  R+LPHF +    P ++GFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA+TGY+
Sbjct: 794 GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYI 853

Query: 743 SRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA 802
            RRLIKA+E + + YD +VRN+ G ++Q  YG+DG+    +E ++   +       + K 
Sbjct: 854 QRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKF 913

Query: 803 TCPPAGQRYLSPQQVSEIVEKQLAAYG 829
              P  +RYL  +  +E + K+L   G
Sbjct: 914 KFDPTNERYLR-RIFNEDILKELMGSG 939



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 136/421 (32%), Positives = 205/421 (48%), Gaps = 63/421 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R++  +V  G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1053 LSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1112

Query: 941  GVPRIKEIINGAKRISTPIITAEL---ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            GVPR+KEIIN +KR   P +T  L      D E A  V+  R+E T L +V  +  I   
Sbjct: 1113 GVPRLKEIINISKRPKAPSLTVFLTGAAARDAEKAKNVL-CRLEHTTLRKVTANTAIYYD 1171

Query: 998  SRLASIVIA----------------------------LDMETIQDAHL------------ 1017
                + VIA                            LD + + D  L            
Sbjct: 1172 PDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAG 1231

Query: 1018 ------CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NV 1070
                  CI  D   E +V   +I +     K  D  +      VDK +    L  ++ N+
Sbjct: 1232 FGDDLNCIFNDDNAEKLVLRIRI-MNSDDNKFQDEEET-----VDKMEDDMFLRCIEANM 1285

Query: 1071 LPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGI 1124
            L  + ++GI+ + +V +   + + +K   V + GE K   ++ L  +GT +  V+    +
Sbjct: 1286 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIVTDTGEFKAIAEWLLETDGTSMMKVLSERDV 1345

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
            D  +T SN I E+   LGIEA R  +  E+N  ++ +G+ ++ RH+ LL D+MT +G ++
Sbjct: 1346 DTNRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1405

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
             ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    LGTG   
Sbjct: 1406 AITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFD 1465

Query: 1245 I 1245
            +
Sbjct: 1466 L 1466


>gi|341894670|gb|EGT50605.1| hypothetical protein CAEBREN_32550 [Caenorhabditis brenneri]
          Length = 1713

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 284/708 (40%), Positives = 421/708 (59%), Gaps = 22/708 (3%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L    VL  FK++TD D  V+ +     RPE +I T + VPP+A+RP+V+  GS  N++
Sbjct: 209 MLTAERVLETFKQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQD 268

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  II+TN  LQ+      +A         LQ  VA  +++ + G+P + Q   R
Sbjct: 269 DLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQYHVATLVDNCIPGLPTATQKGGR 328

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+ DPNL I  V +P  +A+ LT+PE V
Sbjct: 329 PLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIV 388

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           +  N++KL++ +  G  +YPGA+ I   +G ARV          + L+ G  V+RH++DG
Sbjct: 389 TPFNVDKLQELVNRGDTQYPGAKYIIRENG-ARVDLRYHPRAADLHLQPGYRVERHMKDG 447

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D+++FNRQP+LH+MS+M HR +I+PW T R N SV +PYNADFDGDEMN+H+PQ+ E R 
Sbjct: 448 DIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRA 507

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           E   +  V   L TP+  + ++   QD L +  ++T++D F D +    +  Y+     +
Sbjct: 508 EIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDIFIDWSFMMDLLMYLPTWDGK 567

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           V  P PAILKP  LWTGKQ+FS++I  + N+          +T+S      + ++    +
Sbjct: 568 V--PQPAILKPKPLWTGKQVFSLIIPGNVNVL---------RTHST---HPDSEDAGPYK 613

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
            + P D  V   + EL++G +   T+G    + L+ V L + G    +   + +  +   
Sbjct: 614 WISPGDTKVLIEHGELLTGIVCSKTVGKSAGNLLHVVAL-ELGHEIAANFYSHIQTVINA 672

Query: 561 WIGNHGFSIGIDDVQPKKE-LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
           W+   G +IGI D    +E   D +  +     +V ++  K +N+  L+  PG    QT 
Sbjct: 673 WLLREGHTIGIGDTIADQETYRDIQDTIRKAKQDVVDIIEKAHND-DLEPTPGNTLRQTF 731

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R
Sbjct: 732 ENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKR 791

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GF  R+LPHF +    P +KGFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA+T
Sbjct: 792 IPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 851

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GY+ RRLIKA+E + + YD +VRN+   +VQ  YG+DG+D   +E ++
Sbjct: 852 GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQN 899



 Score =  163 bits (413), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 129/401 (32%), Positives = 196/401 (48%), Gaps = 52/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R++    + G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN +K+
Sbjct: 1087 TRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQ 1146

Query: 955  ISTPIITAEL---ECNDNENAARVVKGRIEKTLLGQVA-----------KSIKIVMTSRL 1000
            + TP +T  L      D E A  V+  ++E T L +V            K+  I      
Sbjct: 1147 LKTPSLTVFLTGPAAKDPEKAKDVL-CKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEW 1205

Query: 1001 ASIV-----------------IALDMETIQDAHLCIN--ADIVKESIVQTPKIKLKQQHI 1041
             SI                  I LD + + D  L +   AD +               + 
Sbjct: 1206 VSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNA 1265

Query: 1042 KVLDFRKLEIF----------PPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEK 1090
            + L FR L I             VDK +    L  ++ N+L  + ++GI  + +V + + 
Sbjct: 1266 EKLVFR-LRIAGEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQP 1324

Query: 1091 EKEKRK----VKENGEKK--KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
            + + +K      E G K    + L  +GT L  V+  + ID  +T SN I E+ + LGIE
Sbjct: 1325 QTDDKKRIIITPEGGFKAVADWILETDGTALLRVLSEQQIDPVRTTSNDICEIFEVLGIE 1384

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            A R  I  E++  +   G  ++ RH+ LL D+MT +G ++ ITR GI + +   LM  SF
Sbjct: 1385 AVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSF 1444

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T D L  ASV+   D ++GVSE I++G     GTG   +
Sbjct: 1445 EETVDILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDL 1485


>gi|308468219|ref|XP_003096353.1| CRE-AMA-1 protein [Caenorhabditis remanei]
 gi|308243268|gb|EFO87220.1| CRE-AMA-1 protein [Caenorhabditis remanei]
          Length = 1853

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/695 (41%), Positives = 416/695 (59%), Gaps = 24/695 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL +FK++TD D  V+ +     RPE +I T + VPP+A+RP+V+  GS  N++D+T +L
Sbjct: 215 VLEVFKQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKL 274

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+TN  LQ+      +A         LQ  VA  +++ + G+P + Q   RPL    
Sbjct: 275 SDIIKTNQQLQRNEANGAAAHVLTDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIK 334

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
           QRLKGK+GR RGNL GKRV+++ RTVI+ DPNL I  V +P  +A+ LT+PE V+  N++
Sbjct: 335 QRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVD 394

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL++ +  G  +YPGA+ I   +G ARV          + L+ G  V+RH++DGD+++FN
Sbjct: 395 KLQELVNRGDTQYPGAKYIIRENG-ARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFN 453

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQP+LH+MS+M HR +I+PW T R N SV +PYNADFDGDEMN+H+PQ+ E R E   + 
Sbjct: 454 RQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIC 513

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTP 446
            V   L TP+  + ++   QD L +  ++T++D F D +    +  Y+     +V  P P
Sbjct: 514 MVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWSFMMDLLMYLPTWDGKV--PQP 571

Query: 447 AILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 505
           AILKP  LWTGKQLFS++I  + N +R +      E +   K I + GD ++ IE     
Sbjct: 572 AILKPKPLWTGKQLFSLIIPGNVNVLRTHSTHPDSEDSGPYKWI-SPGDTKVLIE----- 625

Query: 506 DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
                  + EL+SG +   T+G    + L+ V L + G    +   + +  +   W+   
Sbjct: 626 -------HGELLSGIVCSKTVGKSAGNLLHVVTL-ELGYEIAANFYSHIQTVINAWLLRV 677

Query: 566 GFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
           G +IGI D +       D +  +     +V ++  K +N+  L+  PG    QT E  + 
Sbjct: 678 GHTIGIGDTIADHATYLDIQNTIKKAKQDVVDIIEKAHND-DLEPTPGNTLRQTFENKVN 736

Query: 625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
            ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P GF
Sbjct: 737 QILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGF 796

Query: 685 IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
             R+LPHF +    P +KGFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA+TGY+ R
Sbjct: 797 RHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 856

Query: 745 RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           RLIKA+E + + YD +VRN+   +VQ  YG+DG+D
Sbjct: 857 RLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLD 891



 Score =  107 bits (266), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 99/183 (54%), Gaps = 6/183 (3%)

Query: 1069 NVLPMVIVKGIKTVERVVIAEKEKEKRK----VKENGEKK--KYRLLVEGTGLQAVMGAE 1122
            N+L  + ++GI  + +V + +   + +K      E G K    + L  +GT L  V+   
Sbjct: 1284 NMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKAVADWILETDGTALLRVLAER 1343

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
             ID  +T SN I E+ + LGIEA R  I  E++  +   G  ++ RH+ LL D+MT +G 
Sbjct: 1344 QIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGH 1403

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            ++ ITR GI + +   LM  SFE+T D L  ASV+   D ++GVSE I++G     GTG 
Sbjct: 1404 LMAITRHGINRQEVGALMRCSFEETVDILMEASVHAEVDPVKGVSENIMLGQLARCGTGC 1463

Query: 1243 LKI 1245
              +
Sbjct: 1464 FDL 1466



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 79/135 (58%), Gaps = 2/135 (1%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR++    + G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN +K+
Sbjct: 1068 SRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQ 1127

Query: 955  ISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            + TP +T  L      +   A+ V  ++E T L +V  +  I       + VIA D E +
Sbjct: 1128 LKTPSLTVFLTGAAAKDAEKAKDVLCKLEHTTLKKVTLNTAIYYDPDPKNTVIAEDEEWV 1187

Query: 1013 QDAHLCINADIVKES 1027
               +   + D+ + S
Sbjct: 1188 SIFYEMPDHDLSRTS 1202


>gi|83320420|gb|ABC02837.1| RNA polymerase II largest subunit, partial [Rozella allomycis]
          Length = 809

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 280/681 (41%), Positives = 403/681 (59%), Gaps = 26/681 (3%)

Query: 150 IIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQR 208
           II+ N  L++   E           + LQ  VA Y+ + + G+P ++Q + RPL     R
Sbjct: 3   IIKANVHLKKCEAEGAPGHVVSEYEQLLQFHVATYMENSIPGLPKAIQKSGRPLKSISAR 62

Query: 209 LKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKL 268
           LKGK+GR RGNL GKRV+++ RTVI+PDPNL + +V +P  +A+ LTYPE V+ +NIE L
Sbjct: 63  LKGKEGRLRGNLMGKRVDFSARTVITPDPNLSLDQVGVPRTIAKTLTYPEIVTPYNIEYL 122

Query: 269 RQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQ 328
           ++ + NGP ++PGAR +   DG  R+     R +  V L+ G +V+RH+ DGDVVLFNRQ
Sbjct: 123 QKLVNNGPTEHPGARYVVRDDGN-RI---DLRFKTDVVLQPGYLVERHINDGDVVLFNRQ 178

Query: 329 PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGV 388
           PSLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMN+H+PQ+ EA+ E + L  V
Sbjct: 179 PSLHKMSMMGHRIKVMPYSTFRLNLSVTTPYNADFDGDEMNLHIPQSVEAKAELVELALV 238

Query: 389 QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAI 448
              + +P++ +  +   QD L      TR+++F ++A    +  ++     +  LP P I
Sbjct: 239 PTQIVSPQSNKPCMGIVQDTLCGVRKFTRRESFLNKAMVMNIVMWLPSWEGK--LPRPCI 296

Query: 449 LKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGF 508
           LKPV LW+GKQ+FS++I    N  V  + T  +  YS+               + P D  
Sbjct: 297 LKPVPLWSGKQIFSMIIPKGVNC-VTFHSTHPDNEYSD---------------ISPGDTK 340

Query: 509 VYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFS 568
           V   + ELISG + K T+G     GL  V+  ++G+       N +  +   W+  +GFS
Sbjct: 341 VLIEDGELISGIVCKKTVGPA-AGGLIHVIYNEHGSEVAKQFFNGVQTVVNNWLLINGFS 399

Query: 569 IGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILN 628
           IGI D    ++      + I+   E     I++  +G L  +PG    +T E+ +   LN
Sbjct: 400 IGIGDTIADRQTMKNINETIAIAKEEVKATIQQAQKGLLSCEPGMTLRETFESKVNKSLN 459

Query: 629 RIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRS 688
           + R+ AGK+   SL  +N+   M   GSKGS INISQM ACVGQQ+V G+R P GF  R+
Sbjct: 460 KARDSAGKSAQTSLKEQNNVKQMVVAGSKGSYINISQMTACVGQQNVEGKRIPFGFRYRT 519

Query: 689 LPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIK 748
           LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVKTA+TGY+ R+L+K
Sbjct: 520 LPHFTKGDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRKLVK 579

Query: 749 ALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAG 808
           ALED+ I+YD +VRNA G I+QF YG+DGMD   +E +S + +  +    ++K       
Sbjct: 580 ALEDVMIKYDGTVRNALGEIIQFKYGEDGMDAVKIEKQSLDSMRLNNKKFEIKYKVDFLN 639

Query: 809 QRYLSPQQV--SEIVEKQLAA 827
             Y   + V   EI+E+ LA 
Sbjct: 640 PMYGISENVLQKEIIEEILAT 660


>gi|372292153|gb|AEX91899.1| RNA polymerase II largest subunit [Peltigera membranacea]
          Length = 1737

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/711 (41%), Positives = 421/711 (59%), Gaps = 40/711 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQS--NE 140
           + P N L +F+ ++  D + + L+    RPE +IIT + VPP  +RPS+ +DG      E
Sbjct: 208 ITPQNALNIFRHISSEDIQKMGLNVDYARPEWMIITVLPVPPPPVRPSIAVDGGNGMRGE 267

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VA 199
           +D+T +L  II+ N +++    E + A       + LQ  VA Y+++D+ G P ++Q   
Sbjct: 268 DDLTYKLGDIIRANGNVRTCEAEGSPAHVVAEFEQLLQFHVATYMDNDIAGQPQALQKSG 327

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYPE 
Sbjct: 328 RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPET 387

Query: 260 VSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
           V+ +NI+KL Q ++ GP+ +PGA+ +IR  D   R+     +    + L+ G  V+RH+ 
Sbjct: 388 VTPYNIQKLHQLVKTGPNDHPGAKYVIR--DTGERIDLRHHKRAGEISLQYGWKVERHII 445

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE 
Sbjct: 446 DGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 505

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
           R E   L  V  N+ +P+    L+   QD L   + I R+D F  +     +  ++ D  
Sbjct: 506 RAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKELVMNILLWVPD-W 564

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRT--EGDEE 496
           D V +P PAILKP   WTGKQ+ S++I P  N                 L R+  EG   
Sbjct: 565 DGV-IPQPAILKPRPKWTGKQIISLIIPPGLN-----------------LFRSSSEGPSP 606

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
           +       ND  +     EL+ G   K ++G    +G+  ++  + G  A     N    
Sbjct: 607 L-------NDDGLQVSGGELMYGLFNKKSVG-ATSNGVVHIIFNEKGPDAAMSFFNGCQT 658

Query: 557 LSARWIGNHGFSIGIDDVQPKK-ELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           +   W+ ++GFSIGI D  P +  +   +  +  +  EV  +  +   E +L+  PG + 
Sbjct: 659 VVNYWLLHNGFSIGIGDTIPDRVTIQAIEAAVNEQKAEVAEI-TRSATENELEPLPGMNV 717

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            +T E+ +   LN+ R+DAG     SL   N+   M++ GSKGS INISQM A VGQQSV
Sbjct: 718 RETFESKVQKALNKARDDAGTVTEKSLKDTNNATQMARSGSKGSTINISQMTAVVGQQSV 777

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAVK
Sbjct: 778 EGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 837

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           TA+TGY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D  ++EG+
Sbjct: 838 TAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEGQ 888



 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/400 (33%), Positives = 201/400 (50%), Gaps = 55/400 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1060 SRFCKAAVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKN 1119

Query: 955  ISTPIITAELECND--NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T   E N   N+ +A++++  +E T L  V ++ +I     + S V+  D E +
Sbjct: 1120 IKTPSMTVYQEGNKSGNKESAKLLRSAVEHTTLRSVTETTEIYYDPDVYSTVVEADREIV 1179

Query: 1013 QDAHLCINADIVKES------------------IVQTPKIKLKQQHIKVLDFRKLEIFPP 1054
            +   +    D   +S                   VQ    K+K +++K L      IF  
Sbjct: 1180 ESYMILPEEDTRAQSRWLLRITLGRRSLLDKGLTVQDVASKIKSEYMKDLAV----IFSD 1235

Query: 1055 --VDKSKIHFE-----------------LYSLKN-VLPMVIVKGIKTVERVVIAEKEKEK 1094
               D+  I                    L  L+N +L  + ++G+  +ER  +    K K
Sbjct: 1236 NNADEQVIRIRMIQEGKDEDDDLEEDVMLKRLENHLLDTLTLRGVPGIERAFL--NTKTK 1293

Query: 1095 RKVKENG----EKK-----KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
             ++KE+G    +KK     ++ L   G+ L  V+   G+D  +T SN   EV +  GIEA
Sbjct: 1294 LRMKEDGALVMDKKDPLCTEWFLDTSGSALGQVLAIPGVDTTRTYSNSFIEVFEVFGIEA 1353

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
             R  ++ E+   +   G  ++ RH+ LL D+MT RG ++ ITR GI + D   LM  SFE
Sbjct: 1354 TRSALMRELTAVLAFDGSYVNHRHLALLVDVMTSRGHIMAITRHGINRADTGALMRCSFE 1413

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            +T + L  A+  G  D   GVSE +++G   PLGTG L+I
Sbjct: 1414 ETVEILLEAAACGELDDCRGVSENVMLGQLAPLGTGELEI 1453


>gi|397135908|gb|AFO11449.1| RNA polymerase I, partial [Yamadazyma mexicana]
          Length = 863

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 290/721 (40%), Positives = 432/721 (59%), Gaps = 59/721 (8%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  +L +F+ ++  DC  L  SE   RPE ++IT + VPP  +RPS+  + +   E+
Sbjct: 12  LLSPSEILNVFRHISPQDCYRLGFSEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGED 71

Query: 142 DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  +++ N ++Q+  ++ +     S F++L     LQ  VA Y+++D+ G P ++
Sbjct: 72  DLTFKLADVLKANINVQRLEMDGSPQHVISEFEAL-----LQFHVATYMDNDIAGQPQAL 126

Query: 197 Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q   RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +AR L+
Sbjct: 127 QKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLS 186

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
           YPE V+ +NI +L + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+
Sbjct: 187 YPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIA--LQYGWKVE 244

Query: 315 RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
           RHL D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 245 RHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 304

Query: 375 TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
           + E R E   +  V   + +P++ + ++   QD L     +T +D+F  YD+    L   
Sbjct: 305 SPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDSFIEYDQVMNMLYWI 364

Query: 433 YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANM-RVYVNLTVKEKTYSNKLIRT 491
              DG+    +P PA++KP  LWTGKQL S+ I    ++ R+  NL+             
Sbjct: 365 PTWDGV----IPPPAVMKPKPLWTGKQLLSMAIPKGIHLQRLESNLS------------- 407

Query: 492 EGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCM 551
                      CPND  +   + E++ G + K T+G     GL   ++R+ G    +   
Sbjct: 408 -----------CPNDNGMLIVDGEIMFGVVDKKTVG-ATGGGLIHTVMREKGPQVCAQLF 455

Query: 552 NRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKG-KLISENYEVCNVKIKEY----NEGK 606
           + + K+   W+ ++GFSIGI D      ++D    K ++   E    K++E        K
Sbjct: 456 SNIQKVVNYWLLHNGFSIGIGDT-----IADSDTMKTVTTTIEEAKAKVQEIILNAQRNK 510

Query: 607 LQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQM 666
           L+ +PG    ++ E  ++ +LN+ R+ AG++   SL   N+   M   GSKGS INISQM
Sbjct: 511 LEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQM 570

Query: 667 VACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGR 726
            ACVGQQ V G+R P GF DR+LPHF +    P +KGFV NS+  GL+  EFFFH M GR
Sbjct: 571 SACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGR 630

Query: 727 EGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           EGL+DTAVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D   +E +
Sbjct: 631 EGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQ 690

Query: 787 S 787
           S
Sbjct: 691 S 691


>gi|418204396|gb|AFX61752.1| RNA polymerase I largest subunit, partial [Ascosphaera aggregata]
          Length = 1697

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 295/713 (41%), Positives = 424/713 (59%), Gaps = 36/713 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSN--- 139
           + P     +FK ++  D  +L LS    RPE +IIT + VPP  +RPSV++ GS +N   
Sbjct: 198 ITPREARAVFKNISSGDVRLLGLSNEYARPEWMIITVLPVPPPPVRPSVLVGGSGTNQRG 257

Query: 140 ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQV 198
           E+D+T +L  I++ N ++ +   +A+     L  +E L Q  +A Y+++D+ G P +MQ 
Sbjct: 258 EDDLTYKLAEIVRANQNVAR--CQADGMGHGLHEFEALLQYHIATYMDNDIAGQPKAMQK 315

Query: 199 A-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYP 257
           + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +PI +A+ LTY 
Sbjct: 316 SNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAKTLTYT 375

Query: 258 ERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRH 316
           E V+ +NI KL   ++NGPD +PGA+ I  P G    L + K + Q    L+ G  V+RH
Sbjct: 376 EIVTPYNINKLAALVENGPDIHPGAKYIIRPTGEKINLGFNKGQAQGRAMLQYGFKVERH 435

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           ++DGDV+LFNRQPSLH+ S+M H+ R+MP+ T R N SV  PYNADFDGDEMN+HVPQ+E
Sbjct: 436 IQDGDVILFNRQPSLHKESMMAHKVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSE 495

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DRAAFSLMCCYM 434
           E++ E   L  V  N+ +P+    L+   QD L   + I R+DTF   D     +M    
Sbjct: 496 ESKAELRELALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKDHVMNIMMWVPD 555

Query: 435 GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
            DG+    +P PAILKP   WTGKQ+ S+++    N                 L+R + D
Sbjct: 556 WDGV----IPQPAILKPRPRWTGKQIISMVLPSGLN-----------------LLRLDKD 594

Query: 495 EEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
                E   P  DG V+    EL+ GQ  K T+G     G+   +  +YG+       N 
Sbjct: 595 GAPLAERFSPLKDGGVFIHGGELMFGQFSKKTVG-ATGGGVIHTIFNEYGSDVAMSFFNG 653

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
             ++   W+ ++GFSIGI D  P      K  + + +  E  +    +     L   PG 
Sbjct: 654 AQRVVNYWLLHNGFSIGIGDTIPDAATVAKIEEAVRDRKEEVDDITDDATRNALDPLPGM 713

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
           +  +T E+ ++  LN  R+DAG     SL   N  + M++ GSKGS INISQM+A VGQQ
Sbjct: 714 NIRETFESKVSRALNNARDDAGNVTEKSLKDCNHGVQMARSGSKGSTINISQMMAIVGQQ 773

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
           SV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTA
Sbjct: 774 SVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTA 833

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           VKTA+TGY+ R+L+KALE++ ++YD +VRN+ G ++QF+YG+DG+D A++E +
Sbjct: 834 VKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQFIYGEDGLDGAHIENQ 886



 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/402 (32%), Positives = 200/402 (49%), Gaps = 52/402 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+       G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1056 NRFARAVANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKN 1115

Query: 955  ISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T     E   N+ A + ++ ++E T L  VA++++I     + + VI  D + +
Sbjct: 1116 IKTPSMTVYQVPELAGNQEAVKYLRSKVEHTTLRSVAETVEIYYDPDIRNTVIEADRDMV 1175

Query: 1013 QDAHLCINADIVKESIVQTPK-IKLKQQHIKVLD-----------------------FRK 1048
            + ++  I  D+  +   Q+   I+L   H+K++D                       F  
Sbjct: 1176 E-SYFIIPEDVQDKPEDQSQWLIRLVLSHVKLIDKGLTVQDVADRIKSVYKNDITVMFSD 1234

Query: 1049 LEIFPPVDKSKIHFEL--------------YSLK----NVLPMVIVKGIKTVERVVIAEK 1090
                 PV + + + E               Y LK    ++L    ++G+  VER  I EK
Sbjct: 1235 DNSDQPVIRIRPYKEALSDEEDESDGGEMDYFLKIFQQHMLDGCTLRGVPGVERAFINEK 1294

Query: 1091 EKEK-------RKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
               +       RK  E+   K++ L   G+ L AV+  +G+D  +T SN   E+ +  GI
Sbjct: 1295 THARIMSDGSLRKSAEDPLCKEWILETSGSSLAAVLAIDGVDASRTYSNQFIEILEVFGI 1354

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            EA R  ++ E+ + +   G  ++ RH+ LL D+MT RG ++ +TR GI + D   LM  S
Sbjct: 1355 EATRTALLRELTQVLAFDGSYVNHRHLALLIDIMTSRGFLMAVTRHGINRADTGALMRCS 1414

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            FE+T + L  A+     D   GVSE +I+G   P GTG   +
Sbjct: 1415 FEETVEILLEAAAFAELDDCRGVSENLILGQMAPAGTGEFDV 1456


>gi|324120546|dbj|BAJ78664.1| RNA polymerase II largest subunit [Forficula hiromasai]
          Length = 1744

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 284/702 (40%), Positives = 422/702 (60%), Gaps = 28/702 (3%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L    V  +FK +TD +C +L +     RP+ +I+T + VPP+A+RP+V+M GS  N++
Sbjct: 209 VLTAQRVWEIFKHITDEECFILGMDPKFARPDWMILTVLPVPPLAVRPAVVMYGSARNQD 268

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLA-GWETLQVEVAQYINSDVRGVPFSMQVA- 199
           D+T +L  II+ N  LQ    +A  A   LA   + LQ  VA  I++D+ G+P +MQ + 
Sbjct: 269 DLTHKLSDIIKANNELQHN-EQAGGATHVLAENIKLLQFHVATLIDNDMPGLPRAMQKSG 327

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           +PL     RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ +T+PE 
Sbjct: 328 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEI 387

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLE 318
           V+  N+ K+++ +Q G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ 
Sbjct: 388 VTPFNLSKMQELVQRGNSQYPGAKYIVRDNGDRIDL--RFHPKTSDLHLQCGYKVERHVG 445

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD+V+FNRQP+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E 
Sbjct: 446 DGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMET 505

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGD 436
           R E   +      + TP+  + ++   QD LT+   +T++D F ++      LM   + D
Sbjct: 506 RAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWD 565

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
           G     +P PAILKP  LWTGKQLFS++I  +      VNL     T+ ++      +++
Sbjct: 566 G----KMPQPAILKPKPLWTGKQLFSLIIPGN------VNLIRTHSTHPDE------EDD 609

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
              + + P D  V   + ELI G L K TLG  +   L  +   + G          +  
Sbjct: 610 GPYKWISPGDTKVMVEHGELIMGILCKKTLGT-SAGSLLHICYLELGHELCGQFYGNIQT 668

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           +   W+   G SIGI D     +   +  + I +  E     I++ +  +L+  PG    
Sbjct: 669 VVNNWLLYEGHSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAHNMELEPTPGNTLR 728

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           QT E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V 
Sbjct: 729 QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVE 788

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKT
Sbjct: 789 GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT 848

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
           A+TGY+ RRLIKA+E + + YD++VRN+ G ++Q  YG+DG+
Sbjct: 849 AETGYIQRRLIKAMESVMVHYDSTVRNSVGQLIQLRYGEDGL 890



 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 133/420 (31%), Positives = 204/420 (48%), Gaps = 61/420 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R+R  +   G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1054 LSSEAFEWLIGEIETRFRQAQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1113

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENA--ARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN +K+   P +T  L      +A  A+ V  R+E T L +V  +  I    
Sbjct: 1114 GVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 1173

Query: 999  RLASIVI----------------------------ALDMETIQDAHL------------- 1017
               + VI                             LD + + D  L             
Sbjct: 1174 DPQNTVIHEDQEFVNVYYEMPDFDPQRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGF 1233

Query: 1018 -----CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NVL 1071
                 CI  D   E +V   +I +     K+ D  +      VDK +    L  ++ N+L
Sbjct: 1234 GDDLNCIFNDDNAEKLVLRIRI-MNSDENKMQDEEET-----VDKMEDDMFLRCIEANML 1287

Query: 1072 PMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGID 1125
              + ++GI+ + +V +   + + +K   + E GE K   ++ L  +GT +  V+    +D
Sbjct: 1288 SDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVD 1347

Query: 1126 GCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLG 1185
              +T SN I E+   LGIEA R  +  E+N  ++ +G+ ++ RH+ LL D+MT +G ++ 
Sbjct: 1348 PVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMA 1407

Query: 1186 ITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    LGTG   +
Sbjct: 1408 ITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDL 1467


>gi|312273885|gb|ADQ57312.1| RNA polymerase II largest subunit, partial [Nosema sp. CPP 04-02]
          Length = 988

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 316/918 (34%), Positives = 481/918 (52%), Gaps = 103/918 (11%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           ILN   V  +FK+++D D EVL       RPE LI+T + VPP ++RPS++M+G    E+
Sbjct: 96  ILNGEKVHSIFKKISDEDIEVLGFDLAYSRPEWLILTVLLVPPPSVRPSIVMEGMLRAED 155

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  II++N  L++  +E           + LQ  VA  I++D+ G P ++Q + R
Sbjct: 156 DLTHKLSDIIKSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLIDNDISGQPQALQKSGR 215

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL     RLKGK+GR RGNL GKRV+++ R+VI+ D N+ + EV +P+ +A+I T+PE++
Sbjct: 216 PLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEVAKIHTFPEKI 275

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           +  NIEKL + + NGP++YPGA  +   DG    L   F N+  ++L+ G IV+RH+++G
Sbjct: 276 TPFNIEKLEKLVANGPNEYPGANYVIRTDGQRIDL--NF-NRGDIKLEEGYIVERHMQNG 332

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D +LFNRQPSLH+MS+M H+ R+M  +T R N SV +PYNADFDGDEMN+H+PQ   + +
Sbjct: 333 DTILFNRQPSLHKMSMMGHKVRVMAGKTFRLNLSVTSPYNADFDGDEMNLHMPQNYNSIS 392

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCC------YM 434
           E   +  V   +  P++ + ++   QD LT     T +D F+D+     +        Y 
Sbjct: 393 ELEEICMVPKQILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNEMMQVFYSIDFEKYY 452

Query: 435 GDGMDRVD------------------LPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
             G+D V                   L  PAI KP +LWTGKQ+ S +            
Sbjct: 453 DIGLDSVIKKGKKLDMGAKEYSLMGLLSKPAIQKPKQLWTGKQILSFI------------ 500

Query: 477 LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
                  + N   +   +E    +    +D  V     E++SG + K  +G   + GL  
Sbjct: 501 -------FPNVFYKNSSNESRENDLENVSDTSVVICGGEIMSGIIDKKAVG-ATQGGLVH 552

Query: 537 VLLRDYGAHATSGCMNRLAKLSARWIGN-HGFSIGIDDVQPKKELSDKKGKLISENYEVC 595
           ++  D+G    +  ++ + K+  +++ N H FS+GI D     +      + I ++ +  
Sbjct: 553 IIANDFGYSRVTLFIDDIQKIITKFLMNIHVFSMGIGDTVADSDTLKYVKQAIEKSKDSV 612

Query: 596 NVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCG 655
           +  I++    +L   PG    ++ E+ +  +LN+ R+ +G +   SL   N+   M   G
Sbjct: 613 DEIIRKAQNNRLDRLPGMTMKESFESQVNYVLNKARDVSGISTQKSLNKCNNMKAMVLSG 672

Query: 656 SKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSA 715
           SKGS INISQ+ ACVGQQ+V G+R P GF  R+LPHFP++     ++GFV NS+ SGLS 
Sbjct: 673 SKGSFINISQVTACVGQQNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSP 732

Query: 716 TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGD 775
            EFFFH MGGREGL+DTA+KTA+TGY+ RRL+KA+ED +++ D SVR A G + Q+LYG+
Sbjct: 733 EEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVRLDGSVRGATGNVYQYLYGE 792

Query: 776 DGMDPANMEGKSGEPLNFDR-------------LLMK-------VKATCPPAGQRYLSPQ 815
           DG+D   +E +  +  NF                L K        K  C     + +   
Sbjct: 793 DGLDATFLEMQRVQTTNFKEAHFIDMFSTDSTYALKKGAVSDQIYKLLCSDIELQKILYD 852

Query: 816 QVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIK-----FVEDIGWDDKSQI 870
           +   +V+    +Y  E  S+  +N L +        L + I      F   +G      I
Sbjct: 853 EYDWLVKHVFDSYNPEDESQNVVNRLYQNVIASPCNLQRIIHNAISMFQSPVGDVSPYFI 912

Query: 871 LEEVTHKTSGITEKQLEVFIQTCFSRYRV------------------------KRVEAGT 906
           LE  T K  G T + L V I+T  S   +                         +V    
Sbjct: 913 LE--TTKDLGGTNELLNVLIRTHLSVKNILTVYKLDLNGFNWVIEAIKDKIMSSKVAHNE 970

Query: 907 AIGAIGAQSIGEPGTQMT 924
            +G + AQS+GEP TQMT
Sbjct: 971 MVGTLAAQSVGEPATQMT 988


>gi|397135938|gb|AFO11464.1| RNA polymerase I, partial [Candida tepae]
          Length = 872

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 293/714 (41%), Positives = 424/714 (59%), Gaps = 43/714 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           IL P  +L +FK ++  D   + LSE   RPE +IIT + VPP  +RPS+ ++ +   E+
Sbjct: 14  ILTPSEILNVFKHISKEDVTRMGLSEDYARPEWMIITVLPVPPPPVRPSIAINDTARGED 73

Query: 142 DITERLKRIIQTNASLQ---QELVEAN--SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  I++ N ++Q   Q+   A+  + F++L     LQ  VA Y+++D+ G P ++
Sbjct: 74  DLTYKLADILKANGNVQRCEQDGAPAHVINEFEAL-----LQYHVATYMDNDIAGQPQAL 128

Query: 197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + +V +P  +AR LT
Sbjct: 129 QKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSIARTLT 188

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
           YPE V+ +NI +L Q ++NGP+++PGA+ +   D   R+     +    + L+ G  V+R
Sbjct: 189 YPEIVTPYNIHRLTQLVRNGPNEHPGAKYV-IRDTGERIDLRYHKRAGDIALQYGWKVER 247

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           H++DGD VLFNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+
Sbjct: 248 HIDDGDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 307

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCY 433
           EE R E   L  V   + +P++ + ++   QD L     +T++DTF  +D+    L    
Sbjct: 308 EETRAELSQLCMVPLQIISPQSNKPVMGIVQDTLCGIRKLTKRDTFVEFDQVMNILFWIP 367

Query: 434 MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
             DG+    +P PAILKP  LWTGKQ+ S+ I     M+ +                   
Sbjct: 368 DWDGV----VPQPAILKPKPLWTGKQMVSLCIPKGIFMQRF------------------- 404

Query: 494 DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
           D++  I +  P D  +     E+I G + K T+G     GL   ++R+ G          
Sbjct: 405 DDQNPITS--PKDNGMLIAKGEIIYGVVDKKTVG-ATAGGLIHTIMREKGPQICCNFFGN 461

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
           L K+   W+ ++GFSIGI D              I+E        I E    KL  +PG 
Sbjct: 462 LQKVINYWLLHNGFSIGIGDTIADAATMKDITNTIAEAKNKVQEIIFEAQMNKLAPEPGM 521

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              ++ E  ++ +LN+ R+ AG++   SL   N+   M   GSKGS INISQM ACVGQQ
Sbjct: 522 TLRESFEHNVSRVLNQARDTAGRSAEMSLKELNNVKQMVIAGSKGSFINISQMSACVGQQ 581

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
            V G+R P GF DRSLPHF +    P +KGF+ NS+  GL+  EFFFH M GREGL+DTA
Sbjct: 582 IVEGKRIPFGFQDRSLPHFTKDDHSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTA 641

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           VKTA+TGY+ RRL+KALED+ +QYD + RN+ G ++QF+YG+DG+D   +E ++
Sbjct: 642 VKTAETGYIQRRLVKALEDVMVQYDGTTRNSLGDVIQFVYGEDGLDGTQVEKQT 695


>gi|302503240|ref|XP_003013580.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
 gi|291177145|gb|EFE32940.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
          Length = 1635

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 302/711 (42%), Positives = 418/711 (58%), Gaps = 46/711 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QSN 139
           + P   L +F+ +++ D  ++ LS    RPE +IIT + VPP  +RPSV++ GS   Q  
Sbjct: 106 ITPQMALTIFRNISEEDVRLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGTGQRG 165

Query: 140 ENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVPF 194
           E+D+T +L  II+ N ++ +   E +       F+SL     LQ  VA Y+++D+ G+P 
Sbjct: 166 EDDLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESL-----LQYHVATYMDNDIAGIPQ 220

Query: 195 SMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           +MQ + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +PI +A+ 
Sbjct: 221 AMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQT 280

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY----GKFRNQLAVELKS 309
           LTYPE V+ +NI +L Q + NGPD +PGAR +    G    L     G  RN L    + 
Sbjct: 281 LTYPEVVTPYNIHRLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFL----QW 336

Query: 310 GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMN 369
           G  V+RHL DGD +LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMN
Sbjct: 337 GWKVERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMN 396

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +HVPQ+EEAR E   L  V  N+ +P+    L+   QD L   + I R+D F  +     
Sbjct: 397 LHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMN 456

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           +  ++ D  D V LP PAILKP   W+GKQ+ S+++    N                 L+
Sbjct: 457 VLLWVPD-WDGV-LPQPAILKPRPRWSGKQMISMVLPSGLN-----------------LL 497

Query: 490 RTEGDEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
           R + D+    E   P  DG V     EL+ G   K T+G  +  G+   +  +YG  A  
Sbjct: 498 RIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVG-ASGGGVVHTIFNEYGPDAAM 556

Query: 549 GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
              N    +   W+ ++GFSIGI D  P  E   K    +    E  +       E  L+
Sbjct: 557 SFFNGAQAVVNYWLLHNGFSIGIGDTIPDLETIQKIENAVRVRKEEVDSITASATENTLE 616

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
             PG +  +T E+ ++  LN  R++AG A   SL   N+ + M++ GSKGS INISQM A
Sbjct: 617 ALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTA 676

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            VGQQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREG
Sbjct: 677 VVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREG 736

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           L+DTAVKTA+TGY+ R+L+KALE++ ++YD +VRN+ G IVQFLYG+DG+D
Sbjct: 737 LIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIVQFLYGEDGLD 787



 Score =  194 bits (492), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 127/402 (31%), Positives = 202/402 (50%), Gaps = 54/402 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+       G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A  
Sbjct: 964  SRFGKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATN 1023

Query: 955  ISTPIITA--ELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T     EC  N+ +A+ ++  +E T L  V +S +I     + S VI  D++ +
Sbjct: 1024 IKTPSMTVYQAPECRMNKESAKQLRSIVEHTSLRSVTESTEIYYDPNIQSTVIENDIDMV 1083

Query: 1013 QDAHLCINADIVKES----------IVQTPKI------------KLKQQHIK-------- 1042
            + ++  I  D+  +S          I+  PK+            K+K+ + +        
Sbjct: 1084 E-SYFIIPEDVADDSSRQSKWLLRIILSRPKLLDKGLTVQDVATKIKEAYPQDIAVIFSD 1142

Query: 1043 ------VLDFRKLEIFPPVDKSKIHFELYSLK----NVLPMVIVKGIKTVERVVIAEKEK 1092
                  V+  R+++     +         +LK    ++L  + ++G+  ++R  I   EK
Sbjct: 1143 NNADEQVVRIRQIQDPKQDEDDDDTEYDVTLKKLESHLLDTLTLRGVPGIDRAFI--NEK 1200

Query: 1093 EKRKVKENG---------EKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
             + +V E+G         E K++ L   G+ L  V+   GID  +T SN   E+ +  GI
Sbjct: 1201 SRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDASRTYSNQFVEILEVFGI 1260

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            EA R  ++ E+ + +   G  ++ RH+ LL D+MT RG ++ +TR GI + D   LM  S
Sbjct: 1261 EATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRCS 1320

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            FE+T + L +A+     D   GVSE +I+G   P GTG   +
Sbjct: 1321 FEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDV 1362


>gi|324499938|gb|ADY39985.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
          Length = 1867

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/713 (40%), Positives = 423/713 (59%), Gaps = 32/713 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L     L +FK ++D DC V+ +  R   P+ +I   + VPP+A+RP+V+  GS  N++
Sbjct: 207 VLTAERALEIFKGISDADCLVIGMDPRFARPDWMIAQVLPVPPLAVRPAVVTFGSARNQD 266

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQVA 199
           D+T +L  I++TN  L++   EAN A   +   +   LQ  VA  +++ + G+P + Q  
Sbjct: 267 DLTHKLSDIVKTNNQLRRN--EANGAAAHVIAEDVKLLQYHVATLVDNCIPGLPTATQKG 324

Query: 200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RPL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I  V +P  +A+ +T+PE
Sbjct: 325 GRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLPIDTVGVPRTIAQNMTFPE 384

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            V+  N++KL++ +  G  +YPGA+ I   +G ARV          + L+ G  V+RH++
Sbjct: 385 IVTPFNVDKLQELVNRGDSQYPGAKYIIRDNG-ARVDLRYHPRAADLLLQPGYRVERHMK 443

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD+++FNRQP+LH+MS+M HR +I+PW T R N SV  PYNADFDGDEMN+H+PQ+ E 
Sbjct: 444 DGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTTPYNADFDGDEMNLHLPQSLET 503

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYD--RAAFSLMCCYMGD 436
           + E   +  V   L TP+  + ++   QD LT+  ++T++D F +  R    LM     D
Sbjct: 504 KAEISEIAMVPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIELPRMMDLLMQMPNWD 563

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDE 495
           G     +P PAILKP  LWTGKQ+F+++I  + N +R +      E +   K I      
Sbjct: 564 G----KIPQPAILKPKPLWTGKQVFTLIIPGNVNVLRTHSTHPDDEDSGPYKWI------ 613

Query: 496 EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
                   P D  V   + EL++G +   T+G    + L+ V L + G    +   + + 
Sbjct: 614 -------SPGDTKVIIEHGELLAGIICSKTIGRSAGNLLHVVTL-ELGWEVAAHFYSHIQ 665

Query: 556 KLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
                W+   G +IGI D +  +    D +  +    Y+V  V  K +N+ +L+  PG  
Sbjct: 666 TTVNAWLLAEGHTIGIGDTIADQATYKDIQETIRKAKYDVVEVIEKAHND-ELEPTPGNT 724

Query: 615 AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
             QT E ++  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+
Sbjct: 725 LRQTFENMVNRILNDARDRTGGSAQRSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQN 784

Query: 675 VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
           V G+R P GF  R+LPHF +    P +KGFV NS+ +GL+ +EFFFH MGGREGL+DTAV
Sbjct: 785 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 844

Query: 735 KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           KTA+TGY+ RRLIKA+E + + YD +VRN+   +VQ  YG+DG+D   +E +S
Sbjct: 845 KTAETGYIQRRLIKAMESVMVNYDGTVRNSIAQMVQLRYGEDGLDGMWVENQS 897



 Score =  172 bits (437), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 127/408 (31%), Positives = 200/408 (49%), Gaps = 48/408 (11%)

Query: 886  LEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRI 945
             E  I    SR++   V+ G  +GAI AQS+GEP TQMTL TFH+AGV++ N+T GVPR+
Sbjct: 1057 FEWLIGEIESRFKQAIVQPGEMVGAIAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRL 1116

Query: 946  KEIINGAKRISTPIITAELECNDNENA--ARVVKGRIEKTLLGQVAKSIKIVMTSRLASI 1003
            KEIIN +K+  TP +T  L     ++A  A+ V  ++E T L +V  +  I       + 
Sbjct: 1117 KEIINVSKKPKTPSLTVFLTGTAAKDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDPKNT 1176

Query: 1004 VIA----------------------------LDMETIQDAHLCINA--DIVKESIVQTPK 1033
            VI                             LD + + D  L + A  D +         
Sbjct: 1177 VIEEDEEWVNIFYEMPDFDPSRASPWLLRIELDRKRMTDKKLTMEAIADKIHHGFGDDLN 1236

Query: 1034 IKLKQQHIKVLDFR---------KLEIFPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVE 1083
            +     + + L FR         K      VDK +    L  ++ N+L  + ++GI+++ 
Sbjct: 1237 VIYTDDNAEKLVFRLRITNQDGDKGNEEEQVDKMEDDVFLRCIESNMLSDLTLQGIESIT 1296

Query: 1084 RVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEV 1137
            +V + +   + +K   +  +G  K   ++ L  +GT L  V+  + +D  +T SN I E+
Sbjct: 1297 KVYMHKPTTDDKKRVVITPDGGFKAIPEWLLETDGTALAKVLSEQNVDSVRTTSNDICEI 1356

Query: 1138 QQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKS 1197
             + LGIEA R  I  E+N  +   G  ++ RH+ LL D+MT +G ++ ITR GI + +  
Sbjct: 1357 FEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVG 1416

Query: 1198 VLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             LM  SFE+T D L  A+ +   D ++GVSE I++G     GTG   +
Sbjct: 1417 ALMRCSFEETVDILMEAAAHAEQDPVKGVSENIMLGQLARAGTGCFDL 1464


>gi|110669637|gb|ABG81913.1| RNA polymerase II largest subunit [Lecanora hybocarpa]
          Length = 1016

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/708 (40%), Positives = 419/708 (59%), Gaps = 34/708 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS--NE 140
           + P   L +F+ +T  D   + LS    RPE +IIT + VPP  +RPS+ +DG      E
Sbjct: 135 ITPQMALNIFRHITTEDIRRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRGE 194

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA- 199
           +D+T +L  II+ N ++++   E + A       + LQ  VA Y+++D+ G P ++Q + 
Sbjct: 195 DDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSG 254

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYPE 
Sbjct: 255 RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPET 314

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI+KL Q ++NGP+++PGA+ +   D   R+     +    + L+ G  V+RH+ D
Sbjct: 315 VTPYNIQKLHQLVKNGPNEHPGAKYV-IRDSGERIDLRHHKRAGEISLQYGWKVERHIVD 373

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R
Sbjct: 374 GDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 433

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V  N+ +P+    L+   QD L   + + R+D F  +     +  ++ D  D
Sbjct: 434 AEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPD-WD 492

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
            V +P PAILKP  +WTGKQ+ S++I    N                 L+R         
Sbjct: 493 GV-IPQPAILKPRPMWTGKQILSLVIPAGLN-----------------LLRGSD------ 528

Query: 500 ETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
           E   P ND  +     EL+ G L K ++G     G+  ++  + G  A     N    + 
Sbjct: 529 EGFSPLNDDGLLVSGGELMYGLLNKKSVG-ATGGGVIHIIFNEKGPEAAMNFFNGAQTVV 587

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
             W+ ++GFSIGI D  P +E   +    ++   +  +   +   + +L+  PG +  +T
Sbjct: 588 NYWLLHNGFSIGIGDTIPDRETIKRIQNAVTAQKDEVDRITRSATDNELESLPGMNVRET 647

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            E+ ++  LN  R++AG+    SL   N+   M++ GSKGS INISQM A VGQQSV G+
Sbjct: 648 FESKVSKALNNARDEAGRVTEDSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGK 707

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+
Sbjct: 708 RIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 767

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           TGY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D  ++E +
Sbjct: 768 TGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIESQ 815


>gi|194389262|dbj|BAG65619.1| unnamed protein product [Homo sapiens]
          Length = 1935

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 291/734 (39%), Positives = 429/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 180 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 239

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 240 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 299

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 300 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 359

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G  V+RH+ D
Sbjct: 360 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 417

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+L +MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 418 GDIVIFNRQPTLRKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 477

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 478 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 537

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 538 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 586

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 587 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 641

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 642 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 700

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 701 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 760

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF      P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 761 KRIPFGFKHRTLPHFIEDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 820

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 821 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 871

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 872 ----ATLKPSNKAF 881



 Score =  167 bits (423), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1039 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1098

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1099 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1158

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1159 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1218

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1219 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1268

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1269 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLIRVLSEKDVDPVRTTSNDIV 1328

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1329 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1388

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1389 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1438


>gi|324120568|dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus sp. E-43]
          Length = 1792

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 282/730 (38%), Positives = 429/730 (58%), Gaps = 27/730 (3%)

Query: 64  EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNI 120
           +  +   HT E      ++   L+   V  + K +TD +C +L +     RP+ +++T +
Sbjct: 192 DLTAEWKHTNEDNQEKKIS---LSAERVWEILKHITDEECLILGMDPKFARPDWMLVTVL 248

Query: 121 AVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
            VPP+++RP+V+M GS  N++D+T +L  II++N  L +      +A       + LQ  
Sbjct: 249 PVPPLSVRPAVVMYGSARNQDDLTHKLADIIKSNNELTRNEQAGAAAHIISENMKMLQFH 308

Query: 181 VAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
           VA +I++D+ G+P +MQ + +PL     RLKGK+GR RGNL GKRV+++ RTVI+PDPNL
Sbjct: 309 VATFIDNDMPGLPRAMQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNL 368

Query: 240 KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF 299
           +I +V +P  +A+ LT+PE ++  NI+K+++ ++ G  +YPGA+ I   +G  R+     
Sbjct: 369 RIDQVGVPRSIAQNLTFPEIITPFNIDKMQELVRRGNSQYPGAKYIIRDNG-ERIDLRFH 427

Query: 300 RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
                + L+ G  V+RH+ DGD+V+FNRQP+LH+MS+M HR +++PW T R N S  +PY
Sbjct: 428 PRPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPY 487

Query: 360 NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
           NADFDGDEMN+HVPQ+ E R E   L      + TP+  + ++   QD LT+   +T++D
Sbjct: 488 NADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRD 547

Query: 420 TFYDRAAFS--LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNL 477
            F D+      LM   + DG     +P PAILKP  LWTGKQ+FS++I  + NM      
Sbjct: 548 VFLDQEQMMNILMFLPIWDG----KMPIPAILKPRPLWTGKQVFSLIIPGNVNMI----- 598

Query: 478 TVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
               +T+S      + +++   + + P D  V   + ELI G L K +LG  +   L  +
Sbjct: 599 ----RTHST---HPDDEDDGPYKWVSPGDTKVMVEHGELIMGILCKQSLGT-SAGSLLHI 650

Query: 538 LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNV 597
            + + G          +  +   W+   G SIGI D     +   +  K I +  E    
Sbjct: 651 CMLELGHEVCGQFYGNIQTVINHWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIE 710

Query: 598 KIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSK 657
            I++ +  +L+  PG    QT E  +  ILN  R+  G +   SL   N+   M   GSK
Sbjct: 711 VIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSK 770

Query: 658 GSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATE 717
           GS INISQ++ACVGQQ+V G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ +E
Sbjct: 771 GSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 830

Query: 718 FFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDG 777
           FFFH MGGREGL+DTAVKTA+TGY+ RRLIKA+E + + YD ++RN+ G ++Q  YG+DG
Sbjct: 831 FFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDG 890

Query: 778 MDPANMEGKS 787
           +    +E +S
Sbjct: 891 LAGETVEFQS 900



 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 136/433 (31%), Positives = 212/433 (48%), Gaps = 58/433 (13%)

Query: 869  QILEEVTHKTSGITE------KQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQ 922
            Q L   T  T G++E      +  E  I    +R++  +V  G  +GA+ AQS+GEP TQ
Sbjct: 1037 QCLIRSTLCTKGVSENMRLSSEAFEWLIGEIETRFQQAQVAPGEMVGALAAQSLGEPATQ 1096

Query: 923  MTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL---ECNDNENAARVVKGR 979
            MTL TFHFAGV+S N+T GVPR+KEIIN +K+   P +T  L      D E A  V+  R
Sbjct: 1097 MTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL-CR 1155

Query: 980  IEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQ 1039
            +E T L +V  +  I       + VI  D E +   +   + D  + S     +I+L ++
Sbjct: 1156 LEHTTLRKVTANTAIYYDPDPQNTVITEDQEFVTVYYEMPDFDPTRISPWLL-RIELDRK 1214

Query: 1040 HI--KVLDFRKLE-------------IFPPVDKSKIHFELYSLKN--------------- 1069
             +  K L   ++              IF   +  K+   L  + N               
Sbjct: 1215 RMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRLRIMNNDDKGQDDEENQDKME 1274

Query: 1070 -----------VLPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEG 1112
                       +L  + ++GI+ + +V +   + + +K   V E GE K   ++ L  +G
Sbjct: 1275 DDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDAKKRIVVTETGEFKAIAEWLLETDG 1334

Query: 1113 TGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMML 1172
            T L  V+    +D  +T SN I E+   LGIEA R  +  E+N+ ++ +G+ ++ RH+ L
Sbjct: 1335 TSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNQVLQFYGLYVNYRHLAL 1394

Query: 1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232
            L D+MT +G ++ ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE II+
Sbjct: 1395 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAELDPMRGVSENIIL 1454

Query: 1233 GIPMPLGTGILKI 1245
            G    +GTG   +
Sbjct: 1455 GQLPRMGTGCFDL 1467


>gi|448611014|ref|ZP_21661648.1| DNA-directed RNA polymerase subunit A' [Haloferax mucosum ATCC
           BAA-1512]
 gi|445743446|gb|ELZ94927.1| DNA-directed RNA polymerase subunit A' [Haloferax mucosum ATCC
           BAA-1512]
          Length = 974

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/757 (37%), Positives = 421/757 (55%), Gaps = 50/757 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++   F+ + D D   L +     RPE +I+T + VPP+  RPS+ +D  Q +E+D
Sbjct: 245 LMPSDIRDWFEDIPDEDLITLGIDPDRSRPEWMILTVLPVPPVTARPSITLDNGQRSEDD 304

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N    +              WE LQ  V  +I++++ G P +  +  RP
Sbjct: 305 LTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFIDNEISGTPPARHRSGRP 364

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+A  +T    V+
Sbjct: 365 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVATEMTQTMNVT 424

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
           + NI++ RQ ++NGP+ +PGA  +R PDG    +  K   +LA +++ G  V+RHL DGD
Sbjct: 425 ERNIDEARQYVRNGPESHPGANYVRRPDGRRLKVTEKNCEELAEKVELGWEVNRHLVDGD 484

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +V+FNRQPSLHRMSIM H   +MP++T R N  VC PYNADFDGDEMNMH  Q EEAR E
Sbjct: 485 IVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAE 544

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDT-FYDRAAFSLMCCYMGDGMDR 440
           A +LM VQ  + +P+ GE ++ + QD ++ ++L+T  +  F +  A  L+         R
Sbjct: 545 ARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTHDNPHFVETQALDLLRAT------R 598

Query: 441 VD-LPTPAILKP--VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
           VD LP PA         WTG+Q+FS L+    +M            +++K+  T      
Sbjct: 599 VDTLPEPAGEDDDGTPYWTGQQIFSELLPDDLDME-----------FTSKVGDT------ 641

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
                      V     +L+ G + +  +G    + +  VL +DY    +   +N +A L
Sbjct: 642 -----------VLIEGGQLVEGTIDEDAVGAFGGE-IVDVLAKDYSKTRSRIFINEIASL 689

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
           + R I + G SIGIDD     E + +  + I   Y+     I+ Y  G+L+  PG    +
Sbjct: 690 AMRAIMHFGLSIGIDDESIPDEATAQVDEAIDAAYDKIQELIEIYEAGELESLPGRSVDE 749

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           TLE  I   L + R+ AG+         N  ++MS+ G++ S +N++QM  CVGQQ+V G
Sbjct: 750 TLEMKIMQRLGKARDSAGEIAEDHFEEDNPAVVMSKSGARASMLNLTQMAGCVGQQAVRG 809

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            R   G+  R+L H+ +      A GFV NS+ +GL+  EFFFH MGGREGLVDTAV+T+
Sbjct: 810 ERINRGYEGRTLSHYQKGDLSAEAHGFVENSYRAGLTPREFFFHAMGGREGLVDTAVRTS 869

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
            +GY+ RRLI AL +L  QYD SVR+  G IVQF +G+DG  P  +      P++ D + 
Sbjct: 870 KSGYLQRRLINALSELEAQYDGSVRDTSGTIVQFEFGEDGTSPVKVSSDDEMPIDVDNIA 929

Query: 798 MKV---KATCPPAGQRYLS----PQQVSEIVEKQLAA 827
            +V   + T     +R+L     P  +SE  E ++ A
Sbjct: 930 DRVIDAEFTSTEEKERFLGERAPPTNLSEHAEPRVDA 966


>gi|432330443|ref|YP_007248586.1| DNA-directed RNA polymerase subunit A' [Methanoregula formicicum
           SMSP]
 gi|432137152|gb|AGB02079.1| DNA-directed RNA polymerase subunit A' [Methanoregula formicicum
           SMSP]
          Length = 879

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/717 (38%), Positives = 418/717 (58%), Gaps = 31/717 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++    +++ + D   L ++    RPE  I+T + VPP+ +RPS+I++  Q +E+D
Sbjct: 171 LTPADIRARLEKIPNEDLIPLGINPDVARPEWTILTVLPVPPVTMRPSIILENGQRSEDD 230

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N   ++              WE LQ  V  Y++++V G P +  +  RP
Sbjct: 231 LTHKLVDIIRINQRFKENQDAGAPQLIIEDLWELLQYHVTTYLDNEVAGCPPARHRSGRP 290

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK GRFRG+LSGKRV ++ RTVISPDPNL +++V +P  +A  +T P RV+
Sbjct: 291 LKTLSQRLKGKDGRFRGSLSGKRVNFSSRTVISPDPNLSVSQVGVPRAVANEMTVPVRVT 350

Query: 262 DHNIEKLRQCIQNGPDKYP-----GARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
            +NIE+LRQ ++NGP +       GA  +  PD     L     + +A  ++ G  V+R 
Sbjct: 351 PYNIEELRQIVRNGPTRPDVNAPCGANYVIRPDNRRLRLGADNLDTVADMIEPGYTVERQ 410

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           L DGDVVLFNRQPSLHRMSIM HR ++M  RT R N +VC PYNADFDGDEMNMHVPQTE
Sbjct: 411 LRDGDVVLFNRQPSLHRMSIMAHRVKVMEGRTFRLNPAVCPPYNADFDGDEMNMHVPQTE 470

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           EAR EA +L+ VQ N+ +P+ G  ++    D ++  F++T    ++ +     +  Y G 
Sbjct: 471 EARAEASILISVQENILSPRFGGPIIGGIHDHVSGIFMLTHDLRWFTKEQALYLLRYTG- 529

Query: 437 GMDRVDLPTPAILKP-VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
            ++R  +P P  ++  VE W+ KQ+FSV++  + NM  + +      T   ++       
Sbjct: 530 -IER--MPEPGKVEDGVEYWSNKQVFSVILPENLNMVFHASSCQNCDTCKKEV------- 579

Query: 496 EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
                  C  D +V   + +L SG + K  +G  +   + + ++R  G    +  ++   
Sbjct: 580 -------CERDAYVRIIDGKLESGTIDKKAIGAFDGQ-VVNRIIRQQGMKRATKFIDDFT 631

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           KLS R I   GFS GIDD    K    +  +++         +I+ Y +G+L+  PG   
Sbjct: 632 KLSIRGIMLDGFSFGIDDEDLSKTEYGQIDEVLKNAALDVERRIRIYEDGQLEPMPGRTV 691

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            +TLE  I  +L + R+  G+     L   NS ++M+  G++GS +N++QM  C+GQQSV
Sbjct: 692 EETLEMQIMQVLGKARDQTGQIAGRHLGLGNSAVVMAVSGARGSMLNLTQMAGCIGQQSV 751

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G R   G+ DR+LPHF +  +   A GF+ +S+  GL+ TEFFFH +GGREGLVDTAV+
Sbjct: 752 RGERIVRGYDDRTLPHFKKGDRGSDAHGFIQHSYKGGLNPTEFFFHAIGGREGLVDTAVR 811

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLN 792
           T+ +GY+ RR+I AL+DL + YD +VR+ GG I+QF YG+DG DP   +   G+P++
Sbjct: 812 TSQSGYLQRRMINALQDLKVAYDGTVRSTGGKIIQFEYGEDGTDPT--KSAFGDPVD 866


>gi|449303065|gb|EMC99073.1| hypothetical protein BAUCODRAFT_85149 [Baudoinia compniacensis UAMH
           10762]
          Length = 1789

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 271/706 (38%), Positives = 426/706 (60%), Gaps = 39/706 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS---N 139
           + P   L +F+ ++D +   L L+    RPE +++T + VPP A+RPS+ +DG+     +
Sbjct: 217 ITPQYALNVFRAISDEELARLGLNADYARPEWMVLTVLPVPPPAVRPSISVDGTSQGMRS 276

Query: 140 ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-V 198
           E+D+T +L  II+ N+++++  +E +    +    + LQ  VA Y+++D+ GVP ++Q  
Sbjct: 277 EDDLTYKLSDIIRANSNVRRCEMEGSPQHVTEEFVQLLQFHVATYMDNDIAGVPRALQKS 336

Query: 199 ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RP+     RLK K+GR RGNL GKRV+++ RTVI+ DPNL + +V +P  +A+ LT+PE
Sbjct: 337 GRPVKSIRARLKSKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSIAKTLTFPE 396

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            V+ +NI+KL++ ++NGP+++PGAR +   +G  R+   + +N   V+L+ G  V+RH+ 
Sbjct: 397 TVNAYNIQKLQELVRNGPNEHPGARYVIRGEG-ERIDLRRAKND--VQLQYGWKVERHIV 453

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD ++FNRQPSLH+ S+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+ E 
Sbjct: 454 DGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSHET 513

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYMGD 436
           R E   L  V  N+ +P+    L+   QD +   +++TR+D    Y+     L+     D
Sbjct: 514 RAEVSELCAVPKNIVSPQKNGPLMGIVQDTMAGIYMMTRRDVMIDYENVMNILLWLPNWD 573

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
           G+    +P PAIL+P  +WTGKQ+ S+ +    N++   +    E T    L   +G   
Sbjct: 574 GV----VPQPAILRPKPMWTGKQIISLALPAGLNLQRMDD----ENTPHIPLKEKKG--- 622

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCM---NR 553
                       +  +N +L+ G+  K  +G  ++ G+   +  D G+      +   N 
Sbjct: 623 ------------LLVQNGDLVLGRFVKKIVG-ASQGGVVHYIFNDNGSEGPKAAVEFFNA 669

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
             ++   W+ ++GFS+GI D  P +++++K    + +  +     +K     +L+  PG 
Sbjct: 670 AQRVVCYWLLHNGFSVGIGDTVPNQDMANKIEAAVQKEKDQLLELVKTVENNELETLPGM 729

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              +T E+     L+  R +AG      +   N+   M Q GSKGS  N+SQM A VGQQ
Sbjct: 730 TIRETFESKAKSFLDNARNNAGDIAFNGMRACNNVGTMVQSGSKGSSTNVSQMTAAVGQQ 789

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
           S+ G+R P GF  R+LPHFP+    PA++GFV NS+  GL+  EFFFH MGGREGL+DTA
Sbjct: 790 SLEGKRLPFGFKYRTLPHFPKDDYSPASRGFVENSYLRGLTPHEFFFHAMGGREGLIDTA 849

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           VKTA+TGY+ RRL+KALE++ ++YD +VRN+ G IVQF+YG+DG+D
Sbjct: 850 VKTAETGYIQRRLVKALEEVMVKYDGTVRNSMGDIVQFIYGEDGLD 895



 Score =  164 bits (415), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 141/539 (26%), Positives = 232/539 (43%), Gaps = 100/539 (18%)

Query: 777  GMDPANMEGKSGEPLNFDRLLMKVK----------ATCPPAGQRYLSPQQVSEIVEKQLA 826
            G+ P   +     PLN DR++   K          +   P   RY  P+ + E++++ + 
Sbjct: 970  GLGPDEADQSRQLPLNVDRMIRNAKDRFKIKDGARSNLDP---RYAVPK-IKEMLDRLII 1025

Query: 827  AYGKESCS-EAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQ 885
              G +  S EA LN+           L  K  F        +S++  +   K   +    
Sbjct: 1026 VRGDDPLSIEADLNA----------TLLCKANF--------RSRLAFKRIVKDDSLNRDA 1067

Query: 886  LEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRI 945
            L+  +    SR+       G  +G + AQSIGEP TQMTL TFH AGV +   T+GVPR+
Sbjct: 1068 LDNILGDIESRFSRALASPGEMVGVLAAQSIGEPATQMTLNTFHLAGVTAKTTTKGVPRL 1127

Query: 946  KEIINGAKRISTPIITAELECND--NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASI 1003
            KEI+N A+ + TP +       D  ++   + ++ ++E T L  V    +I     + S 
Sbjct: 1128 KEILNVAENLKTPQMKVYQLPEDKLSQEKCKELRSKVEHTSLRNVTDETQIHYDPDITST 1187

Query: 1004 VIALDMETI--------------------------------------------------Q 1013
             +  D + +                                                  Q
Sbjct: 1188 TVEEDRDMVESYFIIPEDSAEPIELQSKWVLRIVLGRRQLLDKGLTVTDVGHAIKEHFGQ 1247

Query: 1014 DAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPM 1073
            D  +  + D   E +V   +++L Q+    +D  +      VD+S          ++L  
Sbjct: 1248 DTAVVFSDDNADEQVV---RVRLLQRGAGKMDEDE-----DVDESPEDMLRRLESHMLDS 1299

Query: 1074 VIVKGIKTVERVVIAEKE--KEKR-----KVKENGEKKKYRLLVEGTGLQAVMGAEGIDG 1126
            V ++G+K V+R  ++ +   +EK      K K +   K++ L  +G  L+  +   G+D 
Sbjct: 1300 VALRGVKNVKRCFVSSETVMREKPDGSLVKSKSDDLCKEWLLDTDGFNLKETLSVTGVDP 1359

Query: 1127 CKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGI 1186
             +T  NH  E+ +  GIEA R  ++ E++  +   G  ++ RHM +L D+M  RG ++ +
Sbjct: 1360 TRTTCNHFGEIFRCFGIEATRAALMRELSAVLTGDGSYVNYRHMAILCDVMCARGTLMAV 1419

Query: 1187 TRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            TR GI + D   LM  SFE+T + LF A+ +G  D   GVSE II+G   P GTG   I
Sbjct: 1420 TRHGINRADTGALMRCSFEETVEILFEAASSGELDDCRGVSENIILGQLAPSGTGEFDI 1478


>gi|448589494|ref|ZP_21649653.1| DNA-directed RNA polymerase subunit A' [Haloferax elongans ATCC
           BAA-1513]
 gi|445735922|gb|ELZ87470.1| DNA-directed RNA polymerase subunit A' [Haloferax elongans ATCC
           BAA-1513]
          Length = 973

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 280/723 (38%), Positives = 408/723 (56%), Gaps = 43/723 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++   F+ + D D   L +     RPE +I+T + VPP+  RPS+ +D  Q +E+D
Sbjct: 247 LMPSDIRDWFEDIPDEDLITLGIDPERSRPEWMILTVLPVPPVTARPSITLDNGQRSEDD 306

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N    +              WE LQ  V  +I++++ G P +  +  RP
Sbjct: 307 LTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFIDNEISGTPPARHRSGRP 366

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+A  +T    V+
Sbjct: 367 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVATEMTQTMNVT 426

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
           D NI + RQ ++NGP+ +PGA  +R PDG    +  K   +LA +++    V+RHL DGD
Sbjct: 427 DRNIGEARQYVRNGPESHPGANYVRRPDGRRLKVTEKNCEELAEKVEVSWEVNRHLVDGD 486

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +V+FNRQPSLHRMSIM H   +MP++T R N  VC PYNADFDGDEMNMH  Q EEAR E
Sbjct: 487 IVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAE 546

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDT-FYDRAAFSLMCCYMGDGMDR 440
           A +LM VQ  + +P+ GE ++ + QD ++ ++L+T  +  F +  A  L+         R
Sbjct: 547 ARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTHDNPHFVETQALDLLRAT------R 600

Query: 441 VD-LPTPAILKP--VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
           VD LP PA         WTG+Q+FS L+    NM            +++K+  T      
Sbjct: 601 VDTLPEPAGEDDDGTPYWTGQQIFSELLPDDLNME-----------FTSKVGDT------ 643

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
                      V   + +L+ G + +  +G    + +  VL +DY    +   +N +A L
Sbjct: 644 -----------VVIEDGQLLEGTIDEDAVGAFGGE-IVDVLAKDYSKTRSRIFINEIASL 691

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
           + R I + G SIGIDD     E + +  + I   Y+     I+ Y  G+L+  PG    +
Sbjct: 692 AMRAIMHFGLSIGIDDESIPDEATAQVDEAIDAAYDKIQELIEIYEAGELESLPGRSVDE 751

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           TLE  I   L + R+ AG+         N  ++MS+ G++ S +N++QM  CVGQQ+V G
Sbjct: 752 TLEMKIMQRLGKARDSAGEIAEDHFDEDNPAVVMSKSGARASMLNLTQMAGCVGQQAVRG 811

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            R   G+ +R+L H+ +      A GFV NS+ +GL+  EFFFH MGGREGLVDTAV+T+
Sbjct: 812 ERINRGYEERTLSHYQKGDLSAEAHGFVENSYCAGLTPREFFFHAMGGREGLVDTAVRTS 871

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
            +GY+ RRLI AL +L  QYD SVR+  G IVQF +G+DG  P  +     +P++ D + 
Sbjct: 872 KSGYLQRRLINALSELEAQYDGSVRDTSGTIVQFEFGEDGTSPVKVSSGDDKPIDVDAIA 931

Query: 798 MKV 800
            +V
Sbjct: 932 DRV 934


>gi|389750938|gb|EIM92011.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Stereum hirsutum FP-91666 SS1]
          Length = 1703

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/699 (41%), Positives = 420/699 (60%), Gaps = 31/699 (4%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITER 146
           V    K+++++D  +L LS+   RPE +I+T + VPP  +RPS+ +DG +  +E+D+T +
Sbjct: 219 VYTTLKKISESDLHLLGLSDEYARPEWMILTVMPVPPPPVRPSIAVDGGAMRSEDDLTYK 278

Query: 147 LKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGF 205
           L  II+ +A++++   E   A       + LQ  VA Y+++D+ G+P ++Q   RP+   
Sbjct: 279 LGDIIKASANVRRCEQEGAPAHVITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAI 338

Query: 206 VQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNI 265
             RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ EV +P  +A  LTYPERV+ +NI
Sbjct: 339 RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPKSIAMTLTYPERVTPYNI 398

Query: 266 EKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLF 325
           E L++ ++NGP  YPGAR +   D   R+   ++  +    L+ G IV+RHL+DGD VLF
Sbjct: 399 EYLQELVRNGPTTYPGARYV-VRDTNERIDL-RYNKRADTFLQFGWIVERHLKDGDFVLF 456

Query: 326 NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
           NRQPSLH+MS+M HR R+MP+ T R N SV  PYNADFDGDEMNMHVPQ+EE R E   +
Sbjct: 457 NRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQI 516

Query: 386 MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPT 445
             V   + +P+  + ++   QD L      T +DTF D      +  ++ D    V  P 
Sbjct: 517 AWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGSV--PI 574

Query: 446 PAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 505
           PAI+KP  +W+GKQ+ S+ I    N+          ++   K      D+ + IE     
Sbjct: 575 PAIIKPKPMWSGKQILSMAIPRGINIH---------RSPDPKSANPVFDDGMLIE----- 620

Query: 506 DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
                  N E+I G + K T+G  ++ GL  V+ R+ G  AT      L  +   W+ ++
Sbjct: 621 -------NGEIIFGIVDKKTVG-ASQGGLVHVVFREKGPEATRTLFTGLQTVVNYWLFHN 672

Query: 566 GFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITD 625
           GFSIGI D    ++      + I+E  +     I++    +L+  PG    ++ E+ +  
Sbjct: 673 GFSIGIGDTIADRKTMAYITQQITERKQNVQQIIEDATHDRLKSMPGMTIRESFESKVER 732

Query: 626 ILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFI 685
            LN  R+D+GK    +L   N+   M   GSKGS INISQM  CVGQQSV GRR P GF 
Sbjct: 733 ELNLARDDSGKYAQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGRRIPFGFR 792

Query: 686 DRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRR 745
            R+LPHF +    P A+GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+TGY+ RR
Sbjct: 793 HRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRR 852

Query: 746 LIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           L+KALED+ + YD +VRN+ G ++QF+YG+DGMD A +E
Sbjct: 853 LVKALEDVMVNYDGTVRNSLGDLIQFVYGEDGMDGAFIE 891



 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/413 (31%), Positives = 208/413 (50%), Gaps = 50/413 (12%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T +  +  +    +++ +  V  G   G + AQSIGEP TQMTL TFH+AGV+S N+T 
Sbjct: 1051 LTREAFDWVLGEVETKFNMSVVNPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTL 1110

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN A  I TP +T  L  E     + A+ ++  +  T L  V  S++I    
Sbjct: 1111 GVPRLKEIINVATNIKTPSLTVYLQPEFAAQSSQAKTIQQELAYTSLRTVTASVEIWYDP 1170

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKI-KLKQQHIKVLDFRKLEIFPPVDK 1057
               S VI  D   ++      + ++  +  +Q+P + +L+    K++D RKL++    ++
Sbjct: 1171 DPTSTVIEEDKVFVESFFAIPDEEVESKIHLQSPWLLRLELDRAKMID-RKLDMQFVANR 1229

Query: 1058 SKIHFE-----LYSLKNVLPMVI------------------------------------V 1076
                F+     ++S  N   +VI                                    +
Sbjct: 1230 IAESFKTDLFVIWSEDNSEKLVIRCRVLGGADKEDEETDSIEEDIFLRQLENTMLNSVSL 1289

Query: 1077 KGIKTVERVVIAEKEK----EKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSN 1132
            +G+K +ERV + E +K    EK  +   G  K++ L  +G  L+AVM  +G+D  +T SN
Sbjct: 1290 RGVKGIERVFMLEHDKVVTDEKGNITGQG-VKEWVLETDGVNLKAVMCMDGVDFTRTYSN 1348

Query: 1133 HIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQ 1192
               E+   LGIEAAR  I+ E+   ++  G  ++ RH+ LL DLMT RG ++ ITR GI 
Sbjct: 1349 SCVEIFNVLGIEAARAAIMKELRGVIEFDGSYVNYRHLALLCDLMTQRGHLMAITRHGIN 1408

Query: 1193 KMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            + D   LM +SFE+T + L  A+  G  D   G++E ++ G   P+GTG  ++
Sbjct: 1409 RADTGALMRSSFEETVEILMEAAAVGERDDCHGIAENVMFGQMAPMGTGAFEV 1461


>gi|383620453|ref|ZP_09946859.1| DNA-directed RNA polymerase subunit A' [Halobiforma lacisalsi AJ5]
 gi|448697814|ref|ZP_21698692.1| DNA-directed RNA polymerase subunit A' [Halobiforma lacisalsi AJ5]
 gi|445781180|gb|EMA32041.1| DNA-directed RNA polymerase subunit A' [Halobiforma lacisalsi AJ5]
          Length = 974

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/706 (39%), Positives = 403/706 (57%), Gaps = 43/706 (6%)

Query: 83  TYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSN 139
           T  L P ++   F+ + D D EVL +     RPE +I+T + VPP+  RPS+ +D  Q +
Sbjct: 241 TNKLMPSDIRDWFEAIPDEDIEVLGIDPDRSRPEWMILTVLPVPPVTARPSITLDNGQRS 300

Query: 140 ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQV 198
           E+D+T +L  II+ N    +              WE LQ  V  ++++++ G P +  + 
Sbjct: 301 EDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRS 360

Query: 199 ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RPL    QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+A+ +T   
Sbjct: 361 GRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVAKEMTQTM 420

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            V++ N+EK R+ + NGP+ +PGA  +R PDG    +  K   QLA ++++G  V+RHL 
Sbjct: 421 NVTERNLEKARRFVSNGPEGHPGANYVRRPDGRRLKVTEKNCEQLAEKVEAGWEVNRHLI 480

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD+V+FNRQPSLHRMSIM H   +MP++T R N  VC PYNADFDGDEMNMH  Q EEA
Sbjct: 481 DGDIVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEA 540

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDT-FYDRAAFSLMCCYMGDG 437
           R EA +LM VQ  + +P+ GE ++ + QD ++ ++L+T  +  F +  A  L+       
Sbjct: 541 RAEARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTHNNPRFNETQALDLLRAT---- 596

Query: 438 MDRVD-LPTPAIL--KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
             R+D LP P+ +  +    WTG  +FS L+    N+      TV EK            
Sbjct: 597 --RIDELPEPSGIDDEGEPFWTGYDVFSELLPDDLNLE--FTGTVGEK------------ 640

Query: 495 EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                         V   + +L+ G + +  +G    + +   + + YG       +N +
Sbjct: 641 --------------VVIEDGQLLEGTIAEDEVGEFGGE-IVDTITKIYGKTRARIFINEV 685

Query: 555 AKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
           A L+ R I + GFSIGIDD    +E   +  + I + Y+     I+ Y  G+L+  PG  
Sbjct: 686 ASLAMRSIMHFGFSIGIDDETIPEEAQARIDETIDDAYDRVEELIEAYERGELESLPGRT 745

Query: 615 AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
             +TLE  I   L+R R++AG          N  ++M++ G++GS +N++QM  CVGQQ+
Sbjct: 746 IDETLEMKIMQTLSRARDNAGNIADEHFTSENPAVVMAESGARGSMLNLTQMAGCVGQQA 805

Query: 675 VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
           V G R   G+ +R+L H+        A GFV NS+ SGL+  EFFFH MGGREGLVDTAV
Sbjct: 806 VRGERINRGYENRTLSHYAENDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLVDTAV 865

Query: 735 KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDP 780
           +T+ +GY+ RRLI AL +L  QYD +VR+    IVQF +G+DG  P
Sbjct: 866 RTSKSGYLQRRLINALSELETQYDGTVRDTSDTIVQFEFGEDGTSP 911


>gi|312273887|gb|ADQ57313.1| RNA polymerase II largest subunit, partial [Nosema disstriae]
          Length = 974

 Score =  504 bits (1299), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 316/917 (34%), Positives = 482/917 (52%), Gaps = 101/917 (11%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           ILN   V  +FK+++D D EVL       RPE LI+T + VPP ++RPS++M+G    E+
Sbjct: 82  ILNGEKVHSIFKKISDEDIEVLGFDLAYSRPEWLILTVLLVPPPSVRPSIVMEGMLRAED 141

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  II++N  L++  +E           + LQ  VA  I++D+ G P ++Q + R
Sbjct: 142 DLTHKLSDIIKSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLIDNDISGQPQALQKSGR 201

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL     RLKGK+GR RGNL GKRV+++ R+VI+ D N+ + EV +P+ +A+I T+PE++
Sbjct: 202 PLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEVAKIHTFPEKI 261

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           +  NIEKL + + NGP++YPGA  +   DG    L   F N+  ++L+ G IV+RH+++G
Sbjct: 262 TPFNIEKLEKLVSNGPNEYPGANYVIRTDGQRIDL--NF-NRGDIKLEEGYIVERHMQNG 318

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D +LFNRQPSLH+MS+M H+ R+M  +T R N SV +PYNADFDGDEMN+H+PQ   + +
Sbjct: 319 DTILFNRQPSLHKMSMMGHKVRVMDGKTFRLNLSVTSPYNADFDGDEMNLHMPQNYNSIS 378

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCC------YM 434
           E   +  V   +  P++ + ++   QD LT     T +D F+D+     +        Y 
Sbjct: 379 ELEEICMVPKQILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNEMMQVLYSIDFEKYY 438

Query: 435 GDGMDRVD------------------LPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
             G+D V                   L  PAI KP +LWTGKQ+ S          ++ N
Sbjct: 439 DIGLDSVIKKGKKFDMGAKEYSLMGLLSKPAIQKPKQLWTGKQILSF---------IFPN 489

Query: 477 LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
           +  K  +  ++    E D+E        +D  V     E++SG + K  +G   + GL  
Sbjct: 490 VFYKNSSNESR----ENDQE------NVSDTSVVICGGEIMSGIIDKKAVG-ATQGGLVH 538

Query: 537 VLLRDYGAHATSGCMNRLAKLSARWIGN-HGFSIGIDDVQPKKELSDKKGKLISENYEVC 595
           ++  D+G    +  ++ + K+  +++ N H FS+GI D     +      + I ++ +  
Sbjct: 539 IIANDFGYSRVTLFIDDIQKIITKFLMNIHVFSMGIGDTVADSDTLKYVKQAIEKSKDSV 598

Query: 596 NVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCG 655
           +  I++     L   PG    ++ E+ +  +LN+ R+ +G +   SL   N+   M   G
Sbjct: 599 DEIIRKAQNNMLDRLPGMTMKESFESQVNYVLNKARDGSGTSTQKSLNKCNNMKAMVLSG 658

Query: 656 SKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSA 715
           SKGS INISQ+ ACVGQQ+V G+R P GF  R+LPHFP++     ++GFV NS+ SGLS 
Sbjct: 659 SKGSFINISQVTACVGQQNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSP 718

Query: 716 TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGD 775
            EFFFH MGGREGL+DTA+KTA+TGY+ RRL+KA+ED +++ D SVR A G + Q+LYG 
Sbjct: 719 EEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVRLDGSVRGATGNVYQYLYGG 778

Query: 776 DGMDPANMEGKSGEPLNFDRL----LMKVKAT----------------CPPAGQRYLSPQ 815
           DG D   +E +  +  NF       +  +++T                C     + +   
Sbjct: 779 DGFDATFLEMQKVQTTNFKETHFVDMFSIESTYAVKKDVVSDQIYKLLCSDIELQKILYD 838

Query: 816 QVSEIVEKQLAAYGKESCSEAFLNSLRK----FFEGQQDKLDKKIKFVEDIGWDDKSQIL 871
           +   +V     +Y  E  S+  +N L +    F    Q  +   I        D     +
Sbjct: 839 EYDWLVRHVFDSYNPEDESQNVVNRLYRNALAFPCNLQRIIHNAINMSHSPVGDVSPYFI 898

Query: 872 EEVTHKTSGITEKQLEVFIQTCFSRYRV------------------------KRVEAGTA 907
            E T K  G T + L V I+T  S   +                         RV     
Sbjct: 899 LEAT-KDLGGTNELLNVLIRTHLSVKNILTVYKLDLNGFNWILEAIKDKIMSSRVAHNEM 957

Query: 908 IGAIGAQSIGEPGTQMT 924
           +G + AQS+GEP TQMT
Sbjct: 958 VGTLAAQSVGEPATQMT 974


>gi|397135954|gb|AFO11472.1| RNA polymerase I, partial [Phaffomyces opuntiae]
          Length = 871

 Score =  504 bits (1299), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 294/733 (40%), Positives = 436/733 (59%), Gaps = 60/733 (8%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  +L +FK +   DC  L       RPE LII+ + VPP  +RPS+  + +Q  E+
Sbjct: 14  VLTPGEILNVFKHIPPEDCIKLGFHNDFARPEWLIISVLPVPPPPVRPSISFNDTQRGED 73

Query: 142 DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  I++ N ++Q+  ++ +     + F+SL     LQ  VA Y+++D+ G P ++
Sbjct: 74  DLTYKLSDILKANINVQKLEMDGSPQHVINEFESL-----LQFHVATYMDNDIAGQPQAL 128

Query: 197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q + RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +AR LT
Sbjct: 129 QKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLT 188

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVD 314
           YPE V+ +NI+KL + ++NGP+++PGA+ +   +G    L Y K    +   L+ G  V+
Sbjct: 189 YPETVTPYNIQKLTELVRNGPNEHPGAKYVIRDNGDRIDLRYNKRAGDIV--LQYGWKVE 246

Query: 315 RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
           RHL D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 247 RHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 306

Query: 375 TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
           +EE R E + +  V   + +P++ +  +   QD L     +T +D+F  YD+    L   
Sbjct: 307 SEETRAELMNIAAVPLQIVSPQSNKPCMGIVQDTLAGVRKMTLRDSFIEYDQMMNILYWI 366

Query: 433 YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
              DG+    +P PAILKP  LW+GKQ+ S+ I    +++ +                  
Sbjct: 367 SDWDGV----IPQPAILKPKPLWSGKQMLSMTIPKGIHLQRF------------------ 404

Query: 493 GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
            DE   +  + P D  +   N E++ G + K T+G  N  GL   ++R+ GA   +    
Sbjct: 405 -DEGTTL--LSPKDNGMLIVNGEILFGVVDKKTVGATN-GGLIHTVMREKGAAQCADLFG 460

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKG-KLISENYEVCNVKIKEY----NEGKL 607
           ++ K+   W+ ++GFSIGI D      ++D    K I+E   +   K+ E      + KL
Sbjct: 461 KIQKVVNFWLLHNGFSIGIGDT-----IADAGTMKEITEAIAIAKEKVDEVTLEAQQNKL 515

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
             K G    ++ E  +   LN  R+ AG++   +L   N+   M   GSKGS INI+QM 
Sbjct: 516 TAKHGMTLRESFEDNVIRYLNEARDKAGRSAEVNLKGLNNVKQMVSAGSKGSFINIAQMS 575

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           ACVGQQSV G+R   GF DR+LPHF +    P +KGFV NS+  GL+  EF+FH MGGRE
Sbjct: 576 ACVGQQSVEGKRIAFGFADRTLPHFAKDDYSPESKGFVENSYLRGLTPQEFYFHAMGGRE 635

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GL+DTAVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D  ++E ++
Sbjct: 636 GLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFIYGEDGLDAGHVEKQT 695

Query: 788 -----GEPLNFDR 795
                GE + F++
Sbjct: 696 IDTIPGEDIAFEK 708


>gi|88601371|ref|YP_501549.1| DNA-directed RNA polymerase subunit A' [Methanospirillum hungatei
           JF-1]
 gi|88186833|gb|ABD39830.1| DNA-directed RNA polymerase, subunit A' [Methanospirillum hungatei
           JF-1]
          Length = 886

 Score =  504 bits (1299), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 285/730 (39%), Positives = 429/730 (58%), Gaps = 35/730 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++    +++ D D + L +     RPE  I+T + VPP+ +RPS+I++  Q +E+D
Sbjct: 172 LTPADIRARLEKIPDDDLQKLGIIGSVARPEWTIMTVLPVPPVTMRPSIILENGQRSEDD 231

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N   ++              WE LQ  V  YI+++V G P +  +  RP
Sbjct: 232 LTHKLVDIIRINQRFKENQDAGAPQLIIEDLWELLQYHVTTYIDNEVAGCPPARHRSGRP 291

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK GRFRG+LSGKRV ++ RTVISPDPNL + EV IP ++A  +T P +V+
Sbjct: 292 LKTLSQRLKGKDGRFRGSLSGKRVNFSSRTVISPDPNLSVNEVGIPQKIANEMTIPVQVT 351

Query: 262 DHNIEKLRQCIQNGPD----KYP-GARMIRYPDGT-ARVLYGKFRNQ-----LAVELKSG 310
             NI++LR+ ++ GPD    K P GA  +  PD    R++ G   +      +A ++  G
Sbjct: 352 VFNIDELRRIVRVGPDRPNLKSPCGANYVIRPDKRRIRLVKGTGADDGNLDFVADQIDVG 411

Query: 311 CIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNM 370
            IV+RHL DGD+VLFNRQPSLHRMSIM H  R+M  +T R N +VC PYNADFDGDEMN+
Sbjct: 412 WIVERHLRDGDIVLFNRQPSLHRMSIMAHWVRLMDGKTFRLNPAVCPPYNADFDGDEMNL 471

Query: 371 HVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLM 430
           H+PQTEEAR EA +L  VQ N+ +P+ G  ++    D ++  FL+T    ++ +     +
Sbjct: 472 HIPQTEEARVEAAMLAAVQENILSPRFGGPIIGGIHDHISGIFLLTHTLRWFTKE--ETI 529

Query: 431 CCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIR 490
                + +DR+  P   +   V+ W+ KQ+FS ++    NM V+   + K          
Sbjct: 530 DLLKNNKIDRLGEPG-KVEDGVKYWSNKQIFSKILPADLNM-VFRASSCKG--------- 578

Query: 491 TEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGC 550
              DE  R++  C  D +V   + ELISG + K  +G  +   L+ ++ R YG    +  
Sbjct: 579 --CDECQRVD--CERDAYVQIIDGELISGVIDKKAVGAFDGAILHRII-RQYGYERAARF 633

Query: 551 MNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLK 610
           ++ + +LS R I + GF+  IDD    K    +  +++    +    +I+ + +G+L+  
Sbjct: 634 IDDMTRLSIRAIMHDGFTFAIDDEDLSKSDYGQIREVLERAAQDVERRIQIFEDGQLEPM 693

Query: 611 PGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACV 670
           PG    +TLE  I  +L + R++ G+     L   NS ++M+  G++GS +N++QM  CV
Sbjct: 694 PGRTPEETLEMQIMQVLGKARDNTGEIAGRHLGLSNSAVVMAVSGARGSMLNLTQMAGCV 753

Query: 671 GQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLV 730
           GQQ+V G R   G+ DR+LPHF +  +   A GFV NS+ SGL+ TEFFFH +GGREGLV
Sbjct: 754 GQQAVRGERIMRGYEDRTLPHFKKHDRGAMAHGFVMNSYKSGLNPTEFFFHAIGGREGLV 813

Query: 731 DTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEP 790
           DTAV+T+ +GY+ RR+I AL+DL + YD +VR  GG I+QF YG+D  DP  M+   GEP
Sbjct: 814 DTAVRTSQSGYLQRRMINALQDLKVAYDMTVRTTGGRIIQFEYGEDSTDP--MKSSFGEP 871

Query: 791 LNFDRLLMKV 800
           ++ + ++  V
Sbjct: 872 VDVEGIVSNV 881


>gi|300122988|emb|CBK23995.2| unnamed protein product [Blastocystis hominis]
          Length = 1828

 Score =  504 bits (1299), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 287/717 (40%), Positives = 423/717 (58%), Gaps = 33/717 (4%)

Query: 81  VATYILNPVNVLFLFKRMTDTDCEVL---YLSERPEKLIITNIAVPPIAIRPSVIMDGSQ 137
           V+ YI +P +V  LF++++  DC  +   Y   +PE +I++ I VPP+A+RP V++ GS 
Sbjct: 185 VSDYI-SPSSVKDLFRKISPEDCRFMGFNYPEIKPEYMILSEIPVPPLAVRPPVMLPGST 243

Query: 138 S-NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           + +E+DIT  L  I++ N ++  +              E LQ   + Y +++ + VP ++
Sbjct: 244 TPSEDDITYALSNILKANKAISGDRFRGKGRNGMDDDLEMLQTYYSNYCDNERKNVPQAI 303

Query: 197 QV-ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q   RPL  F QR+KGK GR RGNL GKRV ++GR+VI+ DP + I EV +P  +A ILT
Sbjct: 304 QKNKRPLKTFRQRIKGKTGRVRGNLMGKRVNFSGRSVITADPTIDIDEVGVPKSLAAILT 363

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
           +PERV+ +NI++L + + N  DK+PGA+ I   DG    L  ++ N +  +LK G IV+R
Sbjct: 364 FPERVTRYNIKELEKLV-NQRDKWPGAKYIIDLDGRRYDL--RYTNGIP-QLKEGMIVER 419

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           H+ +GD+VLFNRQPSLH+MSIM HR R++ + T R N S   PYNADFDGDEMN+HVPQT
Sbjct: 420 HINNGDIVLFNRQPSLHKMSIMGHRVRVLNYSTFRLNLSCTTPYNADFDGDEMNIHVPQT 479

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
            +AR E   LM V  N+ +PK+   ++   QD L  S  +T++DTF  +     M  ++ 
Sbjct: 480 VQARAEVTELMMVHKNIISPKSNGPVMGIVQDTLLGSQKLTQRDTFVAKDMMMNMVMWVD 539

Query: 436 DGMDRVDLPTPAIL-----KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIR 490
           D  D  ++P PA+      K V LWTGKQ++S+++    N++ +     K K     ++ 
Sbjct: 540 D-FDG-NIPIPAVTAHKDGKLVPLWTGKQMYSLILPKDLNIQRFSTPYDKNKKVPLNMM- 596

Query: 491 TEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGC 550
              D E+ IE              EL+ G + K ++GN    G+  VL+ D G  A    
Sbjct: 597 ---DCEVLIE------------EGELLMGIIDKNSIGNTKSGGITHVLMNDRGPDAAKAF 641

Query: 551 MNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLK 610
           +    ++   W+ N GFS+G+ D+ P  E  ++   LI++        I++    +L+ +
Sbjct: 642 LGLNQRMVNYWLMNRGFSVGLGDMVPTPETMNEVMDLIAKAKRKVTSLIQQGQHKQLEKQ 701

Query: 611 PGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACV 670
           PG    Q  E  +   LN +     K  M  L   NS   M+  GSKG+P+N+ Q+  CV
Sbjct: 702 PGKTIEQYFEWSVNSELNTMANQTQKTIMKHLKSDNSLQAMAVAGSKGAPLNLQQISGCV 761

Query: 671 GQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLV 730
           GQQ+V G+R   GF+ R+LPHF +      A GFV NS+  GL+  EF+FH MGGREG++
Sbjct: 762 GQQNVDGKRIAYGFMYRTLPHFCKDDLGADAHGFVVNSYLKGLTPQEFYFHAMGGREGII 821

Query: 731 DTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           DTAVKT+ TGY+ RRLIK++EDL + YD +VRN+ G IVQFLYG+DGMD   +E +S
Sbjct: 822 DTAVKTSKTGYIQRRLIKSMEDLMVYYDGTVRNSRGQIVQFLYGEDGMDSRWIEDQS 878



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 6/152 (3%)

Query: 867  KSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLK 926
            +S +  +   K   +T K  +  I    +R+   +V AG   G + AQSIGEP TQMTL 
Sbjct: 1031 RSMLASKPLMKEHRLTIKAFDWLIAEIENRFMKAQVAAGEVCGIVAAQSIGEPATQMTLN 1090

Query: 927  TFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTL-- 984
            TFHFAGV++ N+T GVPR++EIIN  K ISTP +T  L+   +   +R    RI+ TL  
Sbjct: 1091 TFHFAGVSAKNVTLGVPRLEEIINCVKEISTPTMT--LKLRKDLRGSREDAQRIQNTLGL 1148

Query: 985  --LGQVAKSIKIVMTSRLASIVIALDMETIQD 1014
              L +V  S +I       + V+  D   +++
Sbjct: 1149 ATLDKVISSAEIYYDPDPVNTVVKQDAVLVKN 1180


>gi|392898787|ref|NP_500523.4| Protein AMA-1 [Caenorhabditis elegans]
 gi|380865455|sp|P16356.3|RPB1_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
           Short=RNA polymerase II subunit B1; AltName:
           Full=DNA-directed RNA polymerase III largest subunit
 gi|351061691|emb|CCD69532.1| Protein AMA-1 [Caenorhabditis elegans]
          Length = 1856

 Score =  504 bits (1298), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 285/695 (41%), Positives = 416/695 (59%), Gaps = 24/695 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL +F+++TD D  V+ +     RPE +I T + VPP+A+RP+V+  GS  N++D+T +L
Sbjct: 215 VLEVFQQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKL 274

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+TN  LQ+      +A         LQ  VA  +++ + G+P + Q   RPL    
Sbjct: 275 SDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIK 334

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
           QRLKGK+GR RGNL GKRV+++ RTVI+ DPNL I  V +P  +A+ LT+PE V+  N++
Sbjct: 335 QRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVD 394

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           KL++ +  G  +YPGA+ I   +G ARV          + L+ G  V+RH++DGD+++FN
Sbjct: 395 KLQELVNRGDTQYPGAKYIIRENG-ARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFN 453

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQP+LH+MS+M HR +I+PW T R N SV +PYNADFDGDEMN+H+PQ+ E R E   + 
Sbjct: 454 RQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIA 513

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTP 446
            V   L TP+  + ++   QD L +  ++T++D F D      +  Y+     +V  P P
Sbjct: 514 MVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKV--PQP 571

Query: 447 AILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 505
           AILKP  LWTGKQ+FS++I  + N +R +      E +   K I + GD ++ IE     
Sbjct: 572 AILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWI-SPGDTKVIIE----- 625

Query: 506 DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
                  + EL+SG +   T+G    + L+ V L + G    +   + +  +   W+   
Sbjct: 626 -------HGELLSGIVCSKTVGKSAGNLLHVVTL-ELGYEIAANFYSHIQTVINAWLIRE 677

Query: 566 GFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
           G +IGI D +  +    D +  +     +V +V  K +N+  L+  PG    QT E  + 
Sbjct: 678 GHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHND-DLEPTPGNTLRQTFENKVN 736

Query: 625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
            ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P GF
Sbjct: 737 QILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGF 796

Query: 685 IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
             R+LPHF +    P +KGFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA+TGY+ R
Sbjct: 797 RHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 856

Query: 745 RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           RLIKA+E + + YD +VRN+   +VQ  YG+DG+D
Sbjct: 857 RLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLD 891



 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/400 (32%), Positives = 194/400 (48%), Gaps = 51/400 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR++    + G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN +K 
Sbjct: 1068 SRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKT 1127

Query: 955  ISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVA-----------KSIKIVMTSRL 1000
            + TP +T  L      D E A  V+  ++E T L +V            K+  I      
Sbjct: 1128 LKTPSLTVFLTGAAAKDPEKAKDVL-CKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEW 1186

Query: 1001 ASIV-----------------IALDMETIQDAHLCIN--ADIVKESIVQTPKIKLKQQHI 1041
             SI                  I LD + + D  L +   AD +               + 
Sbjct: 1187 VSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNA 1246

Query: 1042 KVLDFRKLEIF---------PPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEKE 1091
            + L FR L I            VDK +    L  ++ N+L  + ++GI  + +V + +  
Sbjct: 1247 EKLVFR-LRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPN 1305

Query: 1092 KEKRK----VKENGEKK--KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
             + +K      E G K    + L  +GT L  V+    ID  +T SN I E+ + LGIEA
Sbjct: 1306 TDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEA 1365

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
             R  I  E++  +   G  ++ RH+ LL D+MT +G ++ ITR GI + +   LM  SFE
Sbjct: 1366 VRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFE 1425

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            +T D L  A+V+  +D ++GVSE I++G     GTG   +
Sbjct: 1426 ETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDL 1465


>gi|312273883|gb|ADQ57311.1| RNA polymerase II largest subunit, partial [Nosema sp. CO 05-11]
          Length = 974

 Score =  504 bits (1298), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 316/918 (34%), Positives = 479/918 (52%), Gaps = 103/918 (11%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           ILN   V  +FK++ D D EVL       RPE LI+T + VPP ++RPS++M+G    E+
Sbjct: 82  ILNGEKVHSIFKKILDEDIEVLGFDLAYSRPEWLILTILLVPPPSVRPSIVMEGMLRAED 141

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  II++N  L++  +E           + LQ  VA  I++D+ G P ++Q + R
Sbjct: 142 DLTHKLSDIIKSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLIDNDISGQPQALQKSGR 201

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL     RLKGK+GR RGNL GKRV+++ R+VI+ D N+ + EV +P+ +A+I T+PE++
Sbjct: 202 PLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEVAKIHTFPEKI 261

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           +  NIEKL + + NGP++YPGA  +   DG    L   F N+  ++L+ G IV+RH+++G
Sbjct: 262 TPFNIEKLEKLVANGPNEYPGANYVIRTDGQRIDL--NF-NRGDIKLEEGYIVERHMQNG 318

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D +LFNRQPSLH+MS+M H+ R+M  +T R N SV +PYNADFDGDEMN+H+PQ   + +
Sbjct: 319 DTILFNRQPSLHKMSMMGHKVRVMAGKTFRLNLSVTSPYNADFDGDEMNLHMPQNYNSIS 378

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCC------YM 434
           E   +  V   +  P++ + ++   QD LT     T +D F+D+     +        Y 
Sbjct: 379 ELEEICMVPKQILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNEMMQVLYSIDFEKYY 438

Query: 435 GDGMDRVD------------------LPTPAILKPVELWTGKQLFSVLIRPHANMRVYVN 476
             G+D V                   L  PAI KP +LWTGKQ+ S +            
Sbjct: 439 DIGLDSVIKKCKKLDMGAKEYSLMGLLSKPAIQKPKQLWTGKQILSFI------------ 486

Query: 477 LTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYS 536
                  + N   +   +E    +    +D  V     E++SG + K  +G   + GL  
Sbjct: 487 -------FPNVFYKNSSNESRENDLENVSDTSVVICGGEIMSGIIDKKAVG-ATQGGLVH 538

Query: 537 VLLRDYGAHATSGCMNRLAKLSARWIGN-HGFSIGIDDVQPKKELSDKKGKLISENYEVC 595
           ++  D+G    +  ++ + K+  +++ N H FS+GI D     +      + I ++ +  
Sbjct: 539 IIANDFGYSRVTLFIDDIQKIITKFLMNIHVFSMGIGDTVADSDTLKYVKQAIEKSKDSV 598

Query: 596 NVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCG 655
           +  I++    +L   PG    ++ E+ +  +LN+ R+ +G +   SL   N+   M   G
Sbjct: 599 DEIIRKAQNNRLDRLPGMTMKESFESQVNYVLNKARDVSGTSTQKSLNKCNNMKAMVLSG 658

Query: 656 SKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSA 715
           SKGS INISQ+ ACVGQQ+V G+R P GF  R+LPHFP++     ++GFV NS+ SGLS 
Sbjct: 659 SKGSFINISQVTACVGQQNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSP 718

Query: 716 TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGD 775
            EFFFH MGGREGL+DTA+KTA+TGY+ RRL+KA+ED +++ D SVR A G + Q+LYG+
Sbjct: 719 EEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVRLDGSVRGATGNVYQYLYGE 778

Query: 776 DGMDPANMEGKSGEPLNFDR-------------LLMK-------VKATCPPAGQRYLSPQ 815
           DG D   +E +  +  NF                L K        K  C     + +   
Sbjct: 779 DGFDATFLEMQRVQTTNFKEAHFIDMFSTDSTYALKKGAVSDQIYKLLCSDIELQKILYD 838

Query: 816 QVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIK-----FVEDIGWDDKSQI 870
           +   +V+    +Y  E  S+  +N L +        L + I      F   +G      I
Sbjct: 839 EYDWLVKHVFDSYNPEDESQNVVNRLYRNVIASPCNLQRIIHNAISMFQSPVGDVSPYFI 898

Query: 871 LEEVTHKTSGITEKQLEVFIQTCFSRYRV------------------------KRVEAGT 906
           LE  T K  G T + L V I+T  S   +                         +V    
Sbjct: 899 LE--TTKDLGGTNELLNVLIRTHLSVKNILTVYKLDLNGFNWVIEAIKDKIMSSKVAHNG 956

Query: 907 AIGAIGAQSIGEPGTQMT 924
            +G + AQS+GEP TQMT
Sbjct: 957 MVGTLAAQSVGEPATQMT 974


>gi|296822712|ref|XP_002850330.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
           113480]
 gi|238837884|gb|EEQ27546.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
           113480]
          Length = 1748

 Score =  504 bits (1298), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 301/711 (42%), Positives = 417/711 (58%), Gaps = 46/711 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QSN 139
           + P   L +F+ +++ D  ++ LS    RPE +IIT + VPP  +RPSV++ GS   Q  
Sbjct: 215 ITPQMALTIFRNISEEDVRLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGTGQRG 274

Query: 140 ENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVPF 194
           E+D+T +L  II+ N ++ +   E +       F+SL     LQ  VA Y+++D+ G+P 
Sbjct: 275 EDDLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESL-----LQYHVATYMDNDIAGIPQ 329

Query: 195 SMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           +MQ + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +PI +A+ 
Sbjct: 330 AMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQT 389

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY----GKFRNQLAVELKS 309
           LTYPE V+ +NI +L Q + NGPD +PGAR +    G    L     G  RN L    + 
Sbjct: 390 LTYPEVVTPYNIHRLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFL----QW 445

Query: 310 GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMN 369
           G  V+RHL DGD +LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMN
Sbjct: 446 GWKVERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMN 505

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +HVPQ+EEAR E   L  V  N+ +P+    L+   QD L   + I R+D F  +     
Sbjct: 506 LHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMN 565

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           +  ++ D  D V LP PAILKP   W+GKQ+ S+++ P  N                 L+
Sbjct: 566 ILLWVPD-WDGV-LPQPAILKPRPRWSGKQMISMVLPPGLN-----------------LL 606

Query: 490 RTEGDEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
           R + D+    E   P  DG V     EL+ G   K T+G  +  G+   +  +YG     
Sbjct: 607 RIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVG-ASGGGVVHTIFNEYGPEVAM 665

Query: 549 GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
              N    +   W+ ++GFSIGI D  P      K    +    E  +       E  L+
Sbjct: 666 SFFNGAQTVVNYWLLHNGFSIGIGDTIPDLATIQKIENAVRVRKEEVDTITASATENTLE 725

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
             PG +  +T E+ ++  LN  R++AG A   SL   N+ + M++ GSKGS INISQM A
Sbjct: 726 ALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTA 785

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            VGQQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREG
Sbjct: 786 VVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREG 845

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           L+DTAVKTA+TGY+ R+L+KALE++ ++YD +VRN+ G IVQFLYG+DG+D
Sbjct: 846 LIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIVQFLYGEDGLD 896



 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/402 (31%), Positives = 202/402 (50%), Gaps = 54/402 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+       G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A  
Sbjct: 1073 SRFGKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATN 1132

Query: 955  ISTPIITA--ELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T     EC  ++ +A+ ++  +E T L  V +S +I     + S VI  D++ +
Sbjct: 1133 IKTPSMTVYQAPECRMDKESAKQLRSIVEHTSLRSVTESTEIYYDPDIQSTVIENDIDMV 1192

Query: 1013 QDAHLCINADIVKES----------IVQTPKI------------KLKQQHIK-------- 1042
            + ++  I  D+  +S          I+  PK+            K+K+ + +        
Sbjct: 1193 E-SYFIIPEDVADDSSRQSKWLLRIILSRPKLLDKGLTVQDVATKIKEAYPQDIAVIFSD 1251

Query: 1043 ------VLDFRKLEIFPPVDKSKIHFELYSLK----NVLPMVIVKGIKTVERVVIAEKEK 1092
                  V+  R+++     +         +LK    ++L  + ++G+  +ER  I   EK
Sbjct: 1252 NNADEQVVRIRQIQDPKQDEDDDDTEYDVTLKKLESHLLDTLTLRGVPGIERAFI--NEK 1309

Query: 1093 EKRKVKENG---------EKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
             + +V E+G         E K++ L   G+ L  V+   GID  +T SN   E+ +  GI
Sbjct: 1310 SRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDASRTYSNQFVEILEVFGI 1369

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            EA R  ++ E+ + +   G  ++ RH+ LL D+MT RG ++ +TR GI + D   LM  S
Sbjct: 1370 EATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRCS 1429

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            FE+T + L +A+     D   GVSE +I+G   P GTG   +
Sbjct: 1430 FEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDV 1471


>gi|327287678|ref|XP_003228555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Anolis
           carolinensis]
          Length = 1969

 Score =  504 bits (1298), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 291/734 (39%), Positives = 429/734 (58%), Gaps = 39/734 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C +L +     RPE +I T + VPP+++RP+V+M GS  N++
Sbjct: 214 LLSPERVHEIFKRISDEECFILGMDPKFARPEWMICTVLPVPPLSVRPAVVMQGSARNQD 273

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 274 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 333

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 334 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 393

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ D
Sbjct: 394 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQIGYKVERHMCD 451

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ+ E R
Sbjct: 452 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 511

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++     
Sbjct: 512 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 571

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I         
Sbjct: 572 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 620

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                P D  V   N ELI G L K +LG  +   L  +   + G   T    + +  + 
Sbjct: 621 ----SPGDTKVIVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDVTRLFYSNIQTVI 675

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG    Q
Sbjct: 676 NNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 734

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQQ+V G
Sbjct: 735 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 794

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 795 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 854

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
           +TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + F  L 
Sbjct: 855 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 905

Query: 798 MKVKATCPPAGQRY 811
               AT  P+ + +
Sbjct: 906 ----ATLKPSNKAF 915



 Score =  130 bits (326), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 184/404 (45%), Gaps = 57/404 (14%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1073 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1132

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L      +A R   +  R+E T L +V  +  I       + V+A D E +
Sbjct: 1133 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWV 1192

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFE-----LYSL 1067
               +   + D+ + S     +++L ++H   +  RKL +    +K    F      +++ 
Sbjct: 1193 NVYYEMPDFDVTRISPWLL-RVELDRKH---MTDRKLTMEQIAEKINAGFGDDLNCIFND 1248

Query: 1068 KNVLPMVIVKGIKTVERVVIAEKEKEKRKVKEN--------------------------- 1100
             N   +V+   I   +   + E+E+   K+ ++                           
Sbjct: 1249 DNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYM 1308

Query: 1101 ----GEKKKYRLLVEGTGLQA----VMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIID 1152
                 + KK  ++ E    +A    ++  +G+   +  S    +  +T   +   I  + 
Sbjct: 1309 HLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVL 1368

Query: 1153 EINETMKA------HGMSIDKRH-----MMLLADLMTFRGEVLGITRFGIQKMDKSVLML 1201
             I    KA      H +S D  +     + LL D MT RG ++ ITR G+ + D   LM 
Sbjct: 1369 GIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMK 1428

Query: 1202 ASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1429 CSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1472


>gi|154151472|ref|YP_001405090.1| DNA-directed RNA polymerase subunit A' [Methanoregula boonei 6A8]
 gi|154000024|gb|ABS56447.1| DNA-directed RNA polymerase subunit A' [Methanoregula boonei 6A8]
          Length = 879

 Score =  504 bits (1298), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 280/719 (38%), Positives = 416/719 (57%), Gaps = 35/719 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++    +++ D D   L ++    RPE  I+T + VPP+ +RPS+I++  Q +E+D
Sbjct: 171 LTPADIRARLEKIPDEDLIPLGINPRVARPEWTILTVLPVPPVTMRPSIILENGQRSEDD 230

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N   ++              WE LQ  V  Y++++V G P +  +  RP
Sbjct: 231 LTHKLVDIIRINQRFKENQDAGAPQLIIEDLWELLQYHVTTYLDNEVAGCPPARHRSGRP 290

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK GRFRG+LSGKRV ++ RTVISPDPNL +TEV +P  +A  +T P RV+
Sbjct: 291 LKTLSQRLKGKDGRFRGSLSGKRVNFSSRTVISPDPNLSVTEVGVPRAVANEMTIPVRVT 350

Query: 262 DHNIEKLRQCIQNGPDKYP-----GARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
            +N+E+L+Q ++NGP +       GA  +  PD     L     + +A  +++G  V+R 
Sbjct: 351 PYNLEELKQIVRNGPIRSSVNAPCGANYVIRPDNRRLRLGADNLDTVADMIETGWTVERQ 410

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           L DGD+VLFNRQPSLHRMSIM HR ++M  RT R N +VC PYNADFDGDEMN+HVPQTE
Sbjct: 411 LRDGDIVLFNRQPSLHRMSIMAHRIKVMEGRTFRLNPAVCPPYNADFDGDEMNLHVPQTE 470

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRA-AFSLMCCYMG 435
           EAR EA +L  VQ N+ +P+ G  ++    D ++  F++T    ++ +  A  L+     
Sbjct: 471 EARAEASILCSVQENILSPRFGGPIIGGIHDHISGIFMLTHDMRWFTKEEALYLLKPV-- 528

Query: 436 DGMDRVD-LPTPAILK-PVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
               RVD +P P   +  +E W+ KQ+FS ++    NM  + +      T   +L     
Sbjct: 529 ----RVDHMPPPGKTENGIEYWSNKQVFSQILPTALNMVFHASSCQNCDTCKKEL----- 579

Query: 494 DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
                    C  D +V      L SG + K  +G  +   + + ++R YG    +  +++
Sbjct: 580 ---------CERDAYVRIMGGRLESGTIDKKAIGAFDGQ-IVNRIIRQYGMKRATEFIDQ 629

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
           + KLS R I   GFS GIDD    K    +   +++      + +IK Y +G+L+  PG 
Sbjct: 630 VTKLSIRGIMIDGFSFGIDDEDLSKTEYGQIDDVLNTAALDVSRRIKIYEDGQLEPMPGR 689

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              +TLE  I  +L + R+  G+     L   NS ++M+  G++GS +N++QM  C+GQQ
Sbjct: 690 TVEETLEMQIMQVLGKARDQTGQIAGRHLGLGNSAVVMAVSGARGSMLNLTQMAGCIGQQ 749

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
           SV G R   G+ DR+LPHF R  +   A GF+A+S+  GL+ TEFFFH +GGREGLVDTA
Sbjct: 750 SVRGERIVRGYDDRTLPHFKRGDRGADAHGFIAHSYKGGLNPTEFFFHAIGGREGLVDTA 809

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLN 792
           V+T+ +GY+ RR+I AL+DL + YD +VR  GG I+QF YG+D  DP   +   G+P++
Sbjct: 810 VRTSQSGYLQRRMINALQDLKVAYDGTVRTTGGRIIQFQYGEDSTDPT--KSAFGDPVD 866


>gi|326480447|gb|EGE04457.1| DNA-directed RNA polymerase II largest subunit [Trichophyton
           equinum CBS 127.97]
          Length = 1712

 Score =  504 bits (1298), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 302/711 (42%), Positives = 418/711 (58%), Gaps = 46/711 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QSN 139
           + P   L +F+ +++ D  ++ LS    RPE +IIT + VPP  +RPSV++ GS   Q  
Sbjct: 215 ITPQMALTIFRNISEEDVRLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGTGQRG 274

Query: 140 ENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVPF 194
           E+D+T +L  II+ N ++ +   E +       F+SL     LQ  VA Y+++D+ G+P 
Sbjct: 275 EDDLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESL-----LQYHVATYMDNDIAGIPQ 329

Query: 195 SMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           +MQ + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +PI +A+ 
Sbjct: 330 AMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQT 389

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY----GKFRNQLAVELKS 309
           LTYPE V+ +NI +L Q + NGPD +PGAR +    G    L     G  RN L    + 
Sbjct: 390 LTYPEVVTPYNIHRLGQLVDNGPDVHPGARHVIRSSGERIDLRHHKGGGGRNFL----QW 445

Query: 310 GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMN 369
           G  V+RHL DGD +LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMN
Sbjct: 446 GWKVERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMN 505

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +HVPQ+EEAR E   L  V  N+ +P+    L+   QD L   + I R+D F  +     
Sbjct: 506 LHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMN 565

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           +  ++ D  D V LP PAILKP   W+GKQ+ S+++    N                 L+
Sbjct: 566 VLLWVPD-WDGV-LPQPAILKPRPRWSGKQMISMVLPSGLN-----------------LL 606

Query: 490 RTEGDEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
           R + D+    E   P  DG V     EL+ G   K T+G  +  G+   +  +YG  A  
Sbjct: 607 RIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVG-ASGGGVVHTIFNEYGPDAAM 665

Query: 549 GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
              N    +   W+ ++GFSIGI D  P  E   K    +    E  +       E  L+
Sbjct: 666 SFFNGAQAVVNYWLLHNGFSIGIGDTIPDLETIQKIENAVRVRKEEVDSITASATENTLE 725

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
             PG +  +T E+ ++  LN  R++AG A   SL   N+ + M++ GSKGS INISQM A
Sbjct: 726 ALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTA 785

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            VGQQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREG
Sbjct: 786 VVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREG 845

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           L+DTAVKTA+TGY+ R+L+KALE++ ++YD +VRN+ G IVQFLYG+DG+D
Sbjct: 846 LIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIVQFLYGEDGLD 896



 Score =  140 bits (352), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 171/356 (48%), Gaps = 54/356 (15%)

Query: 941  GVPRIKEIINGAKRISTPIITA--ELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEI+N A  I TP +T     EC  N+ +A+ ++  +E T L  V +S +I    
Sbjct: 1087 GVPRLKEILNVATNIKTPSMTVYQAPECRMNKESAKQLRSIVEHTSLRSVTESTEIYYDP 1146

Query: 999  RLASIVIALDMETIQDAHLCINADIVKES----------IVQTPKI------------KL 1036
             + S VI  D++ ++ ++  I  D+  +S          I+  PK+            K+
Sbjct: 1147 NIQSTVIENDVDMVE-SYFIIPEDVADDSSRQSKWLLRIILSRPKLLDKGLTVQDVATKI 1205

Query: 1037 KQQHIK--------------VLDFRKLEIFPPVDKSKIHFELYSLK----NVLPMVIVKG 1078
            K+ + +              V+  R+++     +         +LK    ++L  + ++G
Sbjct: 1206 KEAYPQDIAVIFSDNNADEQVVRIRQIQDPKQDEDDDDTEYDVTLKKLESHLLDTLTLRG 1265

Query: 1079 IKTVERVVIAEKEKEKRKVKENG---------EKKKYRLLVEGTGLQAVMGAEGIDGCKT 1129
            +  ++R  I   EK + +V E+G         E K++ L   G+ L  V+   GID  +T
Sbjct: 1266 VPGIDRAFI--NEKSRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDASRT 1323

Query: 1130 KSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRF 1189
             SN   E+ +  GIEA R  ++ E+ + +   G  ++ RH+ LL D+MT RG ++ +TR 
Sbjct: 1324 YSNQFVEILEVFGIEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRH 1383

Query: 1190 GIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            GI + D   LM  SFE+T + L +A+     D   GVSE +I+G   P GTG   +
Sbjct: 1384 GINRADTGALMRCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDV 1439


>gi|429217660|ref|YP_007175650.1| DNA-directed RNA polymerase subunit A'' [Caldisphaera lagunensis
           DSM 15908]
 gi|429134189|gb|AFZ71201.1| DNA-directed RNA polymerase subunit A'' [Caldisphaera lagunensis
           DSM 15908]
          Length = 888

 Score =  504 bits (1298), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 287/728 (39%), Positives = 421/728 (57%), Gaps = 35/728 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  +    +R+ D D  VL +   + RPE +++T + VPP+++RPS+ M+     E+D
Sbjct: 184 LTPSEIRERLERVQDKDIVVLGVDPKAARPEWMVLTVLPVPPLSVRPSITMESGMRAEDD 243

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLA--GWETLQVEVAQYINSDVRGV-PFSMQVA 199
           +T  L  I++ N  L+  L  +++A +S+    W+TLQ  +A YI++++  +   S +  
Sbjct: 244 LTHALVEIVRQNERLKNFL--SSNAPESMVEEAWQTLQNVIAAYIDNELPNIYQLSHRGR 301

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           + L    QRLKGK+GR RGNL+GKRV ++ RTVISPDP + I EV +P  +A+ILT P  
Sbjct: 302 KQLKTIAQRLKGKEGRLRGNLNGKRVNFSARTVISPDPYISIDEVGVPEEIAKILTLPIV 361

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARV--LYGKFRNQLAVELKSGCIVDRHL 317
           V+ +NIE+ R+ + NGP  +PGA  +       ++   Y +   QLA  L+ G IV+RHL
Sbjct: 362 VTPYNIEEARKYVLNGPYNWPGAMFVYKSRQNMKIDLRYQRNYRQLAESLEVGDIVERHL 421

Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
            +GD+VLFNRQPSLHRMSIM H+ R+MP RT R N   C PYNADFDGDEMN+HVP+ EE
Sbjct: 422 LNGDIVLFNRQPSLHRMSIMAHKVRVMPGRTFRLNLLDCAPYNADFDGDEMNLHVPRLEE 481

Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCC---YM 434
           AR EA  LM V+  + +P+ G  ++   QD+++ S+L+T K     +   SL+     Y 
Sbjct: 482 ARAEAEELMLVEKQILSPRYGGPIIGGRQDYISGSYLLTVKTNLLTKEQVSLLLAAANYK 541

Query: 435 GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
           G       +P PAI+KP  LWTGKQL S+ +    +      +   E    N+       
Sbjct: 542 GK------MPEPAIIKPQPLWTGKQLVSLFLPKGLSFEGRAKINAGELKCDNE------- 588

Query: 495 EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                   C  D +    N  L+ G   K  +G    + +   +  +YG       ++ +
Sbjct: 589 -------RCFFDSYTIISNGRLLMGVFDKNAIGAEQPENVLHYITLEYGPDKAREFLDNV 641

Query: 555 AKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCD 614
            ++  R +   GFSI + +V+  KE  DK   ++ +        I  Y EG L++ PG  
Sbjct: 642 FRMFIRMLEIKGFSISLKEVEITKEAKDKIKIMVEQAKNEIQEIINNYKEGNLEVIPGRT 701

Query: 615 AAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQS 674
           A ++LE  I   L ++R+DAGK  +  +   N+  IM++ G++GS INI+QM A +GQQ+
Sbjct: 702 AEESLELKIIQRLQKLRDDAGKLAISYMDPFNNAFIMARTGARGSDINITQMAAMLGQQT 761

Query: 675 VGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAV 734
           V G+R   GF  R+LP F      P A+GF+ ++F  GL   E FFH  GGREGLVDTAV
Sbjct: 762 VRGKRISRGFRTRTLPQFKPGDLSPEARGFIISNFRLGLKPYEVFFHAAGGREGLVDTAV 821

Query: 735 KTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFD 794
           KT+ +GYM RRLI AL+DL + YD +VR++ G IVQF YG+DG+DP  M    G+ +N D
Sbjct: 822 KTSQSGYMQRRLINALQDLYVSYDGTVRDSVGNIVQFKYGEDGVDP--MLTYHGKAVNID 879

Query: 795 RLLMKVKA 802
           R++ K K 
Sbjct: 880 RIIQKAKG 887


>gi|113957457|gb|ABI49115.1| RNA polymerase II largest subunit [Lobariella pallida]
          Length = 996

 Score =  504 bits (1298), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 286/706 (40%), Positives = 415/706 (58%), Gaps = 34/706 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS--NE 140
           + P   L +F+ +++ +   + LS    RPE +IIT + VPP  +RPS+ +DG      E
Sbjct: 115 ITPQTALNIFRHISNDEIRKMGLSSDYARPEWMIITVLPVPPPPVRPSISVDGGNGMRGE 174

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA- 199
           +D+T +L  II+ + +++    E + A       + LQ  VA Y+++D+ G P ++Q + 
Sbjct: 175 DDLTYKLGDIIRASGNVRTCEAEGSPAHVVADFEQLLQFHVATYMDNDIAGQPQALQKSG 234

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYPE 
Sbjct: 235 RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPET 294

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI+KL Q ++NGP+ +PGA+ +   D   R+     +    + L+ G  V+RH+ D
Sbjct: 295 VTPYNIQKLHQLVKNGPNDHPGAKYV-IRDSGERIDLRHHKRAGEISLQYGWKVERHIID 353

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R
Sbjct: 354 GDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 413

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V  N+ +P+    L+   QD L   + + R+D F ++     +  ++ D  D
Sbjct: 414 AEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKLCRRDVFLNKEQVMNILLWVPD-WD 472

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
            V LP PAILKP   WTGKQ+ S++I P  N                 L R+        
Sbjct: 473 GV-LPQPAILKPRPKWTGKQIISLVIPPGLN-----------------LTRSSS------ 508

Query: 500 ETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
           E   P ND  ++    EL+ G   K ++G     G+  ++  + G  A     N    + 
Sbjct: 509 EGFSPLNDDGLFVSGGELMYGLFDKKSVG-ATSGGIIHIIFNEKGPEAAMNFFNGAQTVV 567

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
             W+ ++GFSIGI D  P +    +    +++  E      +   E  L+  PG +  +T
Sbjct: 568 NYWLLHNGFSIGIGDTIPDRNTIQRIENAVNQQKEDVAEITRSATENDLEPLPGMNVRET 627

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            E+ ++  LN+ R+DAG      L   N+   M++ GSKGS INISQM A VGQQSV G+
Sbjct: 628 FESKVSKALNKARDDAGTVTEEGLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGK 687

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+
Sbjct: 688 RIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 747

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           TGY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D  ++E
Sbjct: 748 TGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIE 793


>gi|110669641|gb|ABG81915.1| RNA polymerase II largest subunit [Umbilicaria mammulata]
          Length = 1014

 Score =  504 bits (1297), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 292/715 (40%), Positives = 428/715 (59%), Gaps = 47/715 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QSN 139
           + P   L +F+ ++  +   + LS    RPE +IIT + VPP  +RPS+ +DG+      
Sbjct: 134 ITPQMALNIFRHISTEEIRKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGTGQGMRG 193

Query: 140 ENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVPF 194
           E+D+T +L  II+ N ++++   E + A     F+SL     LQ  VA Y+++D+ G P 
Sbjct: 194 EDDLTYKLGDIIRANGNVRRCETEGSPAHVVSEFESL-----LQFHVATYMDNDIAGQPQ 248

Query: 195 SMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           ++Q   RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR 
Sbjct: 249 ALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 308

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIV 313
           LTYPE V+ +NI+KL Q ++NGP+++PGA+ +   D   R+     +    + L+ G  V
Sbjct: 309 LTYPETVTPYNIQKLHQLVKNGPNEHPGAKYV-IRDSGERIDLRHHKRAGEISLQYGWKV 367

Query: 314 DRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVP 373
           +RH+ DGD ++FNRQPSLH+ S+M HR R++P+ T R N SV +PYNADFDGDEMN+HVP
Sbjct: 368 ERHIVDGDYIIFNRQPSLHKESMMGHRVRVVPYSTFRLNLSVTSPYNADFDGDEMNLHVP 427

Query: 374 QTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCY 433
           Q+EE R E   L  V  N+ +P+    L+   QD L   + + R+D F  +     +  +
Sbjct: 428 QSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKDQVMNILLW 487

Query: 434 MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
           + D  D V +P PAILKP   WTGKQL S++I    N                 LIRT  
Sbjct: 488 VPD-WDGV-IPQPAILKPRPKWTGKQLISLVIPAGLN-----------------LIRTSE 528

Query: 494 DEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
                 E + P ND  ++    EL+ G L K ++G  +  G+  ++  + G  A     N
Sbjct: 529 ------EGLSPANDDGLFVHGGELMYGLLSKKSVG-ASAGGIIHIIFNEKGPEAAMNFFN 581

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKE-LSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
               +   W+ ++GFSIGI D  P +  +   +  + ++  +V  +  +   E +L+  P
Sbjct: 582 GAQTVVNYWLLHNGFSIGIGDTIPDRHTIQQIEDAVNNQKADVAEI-TRSATENELEPLP 640

Query: 612 GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
           G +  +T E+ ++  LN+ R+DAG     SL   N+ + M++ GSKGS INISQM A VG
Sbjct: 641 GMNVRETFESKVSKALNKARDDAGTKTEESLKDLNNAIQMARSGSKGSTINISQMTAVVG 700

Query: 672 QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
           QQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+D
Sbjct: 701 QQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLID 760

Query: 732 TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           TAVKTA+TGY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D  ++E +
Sbjct: 761 TAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFIYGEDGLDGVHIEAQ 815


>gi|324120544|dbj|BAJ78663.1| RNA polymerase II largest subunit [Euborellia plebeja]
          Length = 1812

 Score =  504 bits (1297), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 280/700 (40%), Positives = 416/700 (59%), Gaps = 24/700 (3%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L    V  +FK +TD +C +L +     RP+ +I+T + VPP+A+RP+V+M GS  N++
Sbjct: 208 VLTAQRVWEIFKHITDEECFILGMDPKFARPDWMILTVLPVPPLAVRPAVVMYGSARNQD 267

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  II+ N  L        +A       + LQ  VA  I++D+ G+P +MQ + +
Sbjct: 268 DLTHKLADIIKANNELVHNEQAGAAAHVLAENIKLLQFHVATLIDNDMPGLPRAMQKSGK 327

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL     RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ +T+PE V
Sbjct: 328 PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIV 387

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
           +  N+EK+++ +Q G  +YPGA+ I   +G  R+          + L+ G  V+RH+ DG
Sbjct: 388 TPFNLEKMQELVQRGNSQYPGAKYIVRDNGD-RIDLRYHPKTSDLHLQCGYKVERHVGDG 446

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D+V+FNRQP+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R 
Sbjct: 447 DLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRA 506

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGM 438
           E   +      + TP+  + ++   QD LT+   +T++D F ++      LM   + DG 
Sbjct: 507 EVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDG- 565

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
               +P PAILKP  LWTGKQLFS++I  +      VNL     T+ ++      +++  
Sbjct: 566 ---KMPQPAILKPKPLWTGKQLFSLIIPGN------VNLIRTHSTHPDE------EDDGP 610

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
            + + P D  V   + ELI G L K TLG  +   L  +   + G          +  + 
Sbjct: 611 YKWISPGDTKVMVEHGELIMGILCKKTLGT-SAGSLLHICYLELGHELCGQFYGNIQTVV 669

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
             W+   G SIGI D     +   +  + I +  E     I++ +  +L+  PG    QT
Sbjct: 670 NNWLLYEGHSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQT 729

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+
Sbjct: 730 FENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGK 789

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R P GF  R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKTA+
Sbjct: 790 RIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAE 849

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
           TGY+ RRLIKA+E + + YD++VRN+ G ++Q  YG+DG+
Sbjct: 850 TGYIQRRLIKAMESVMVHYDSTVRNSVGQLIQLRYGEDGL 889



 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 133/420 (31%), Positives = 204/420 (48%), Gaps = 61/420 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R+R  +   G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1053 LSSEAFEWLIGEIETRFRQAQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1112

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENA--ARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN +K+   P +T  L      +A  A+ V  R+E T L +V  +  I    
Sbjct: 1113 GVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 1172

Query: 999  RLASIVI----------------------------ALDMETIQDAHL------------- 1017
               + VI                             LD + + D  L             
Sbjct: 1173 DPQNTVIHEDQEFVNVYYEMPDFDPQRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGF 1232

Query: 1018 -----CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NVL 1071
                 CI  D   E +V   +I +     K+ D  +      VDK +    L  ++ N+L
Sbjct: 1233 GDDLNCIFNDDNAEKLVLRIRI-MNSDDNKLQDEEET-----VDKMEDDMFLRCIEANML 1286

Query: 1072 PMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGID 1125
              + ++GI+ + +V +   + + +K   + E GE K   ++ L  +GT +  V+    +D
Sbjct: 1287 SDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVD 1346

Query: 1126 GCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLG 1185
              +T SN I E+   LGIEA R  +  E+N  ++ +G+ ++ RH+ LL D+MT +G ++ 
Sbjct: 1347 PVRTFSNDICEIFSVLGIEAVRKSVEKEMNSVLQFYGLYVNYRHLALLCDVMTAKGHLMA 1406

Query: 1186 ITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    LGTG   +
Sbjct: 1407 ITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDL 1466


>gi|448307075|ref|ZP_21496976.1| DNA-directed RNA polymerase subunit A' [Natronorubrum bangense JCM
           10635]
 gi|445596622|gb|ELY50707.1| DNA-directed RNA polymerase subunit A' [Natronorubrum bangense JCM
           10635]
          Length = 973

 Score =  504 bits (1297), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 281/728 (38%), Positives = 413/728 (56%), Gaps = 47/728 (6%)

Query: 83  TYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSN 139
           T  L P ++   F+ + D D EVL ++    RPE +I+T + VPP+  RPS+ +D  Q +
Sbjct: 241 TNKLMPSDIRDWFEAIPDEDIEVLGINSERSRPEWMILTVLPVPPVTTRPSITLDNGQRS 300

Query: 140 ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQV 198
           E+D+T +L  II+ N    +              WE LQ  V  ++++++ G P +  + 
Sbjct: 301 EDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRS 360

Query: 199 ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RPL    QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+A+ +T   
Sbjct: 361 GRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVAKEMTQTM 420

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            V++ N+E+ R+ + NGP+ +PGA  +R PDG    +  K   QLA ++++G  V+RHL 
Sbjct: 421 NVTERNLEEARRFVSNGPEGHPGANYVRRPDGRRLKVTEKNCEQLAEKVEAGWEVNRHLI 480

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD+++FNRQPSLHRMSIM H   +MP++T R N  VC PYNADFDGDEMNMH  Q EEA
Sbjct: 481 DGDIIIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEA 540

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDT-FYDRAAFSLMCCYMGDG 437
           R EA +LM VQ  + +P+ GE ++ + QD ++ ++L+T  +  F +  A  L+       
Sbjct: 541 RAEARVLMRVQEQMLSPRFGENIIGAIQDHISGTYLLTHDNPRFNETQALDLLRAT---- 596

Query: 438 MDRVD-LPTPAIL----KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
             R+D LP P+ +    KP   WTG  +FS L+    N+    N T            T 
Sbjct: 597 --RIDELPEPSGIDDEGKP--FWTGYAVFSELLPDDLNL----NFT-----------GTI 637

Query: 493 GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
           G++             V   + +L+ G + +  +G    + +   + + YG       +N
Sbjct: 638 GED-------------VIIEDGQLLEGTIAEDEVGEFGGE-IVDTITKVYGNTRARIFVN 683

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
            L+ L+ R I + GFSIGIDD    KE  D+  + I +  +     I+ Y  G+L+  PG
Sbjct: 684 ELSTLAMRAIMHFGFSIGIDDETIPKEAQDRIDETIDDANDRVEELIEAYERGELESLPG 743

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
               +TLE  I   L+R R++AG          N  ++M+  G++GS +N++QM   VGQ
Sbjct: 744 RTIDETLEMKIMQTLSRARDNAGNIADEHFEDDNPAVVMANSGARGSMLNLTQMAGAVGQ 803

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           Q+V G R   G+ DR+L H+        A GFV NS+ SGL+  EFFFH MGGREGLVDT
Sbjct: 804 QAVRGERINRGYEDRTLSHYEPNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLVDT 863

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLN 792
           AV+T+ +GY+ RRLI AL +L  QYD +VR+    IVQF +G+DG  P  +   +   ++
Sbjct: 864 AVRTSKSGYLQRRLINALSELETQYDGTVRDTSDTIVQFEFGEDGTSPVKVSSSADNDID 923

Query: 793 FDRLLMKV 800
            D +  KV
Sbjct: 924 VDEIATKV 931


>gi|397135904|gb|AFO11447.1| RNA polymerase I, partial [Meyerozyma guilliermondii]
          Length = 872

 Score =  504 bits (1297), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 288/715 (40%), Positives = 425/715 (59%), Gaps = 45/715 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  +L +FK +   DC  L  +E   RPE ++IT + VPP  +RPS+  + +   E+
Sbjct: 14  LLTPSEILNVFKHINSEDCVRLGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGED 73

Query: 142 DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  +I+ N ++Q+  ++ +     S F++L     LQ  VA Y+++D+ G P ++
Sbjct: 74  DLTFKLADVIKANINVQRLELDGSPQHVISEFEAL-----LQFHVATYMDNDIAGQPQAL 128

Query: 197 Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q   RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +AR LT
Sbjct: 129 QKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLT 188

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
           YPE V+ +NI +L + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+
Sbjct: 189 YPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVE 246

Query: 315 RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
           RHL D D VLFNRQPSLH+MS+MCHR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 247 RHLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 306

Query: 375 TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
           + E R E   +  V   + +P++ + ++   QD L     +T +D F  YD+    L   
Sbjct: 307 SPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIEYDQVMNMLYWI 366

Query: 433 YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
              DG+    +P PA++KP  LWTGKQL S+ I    +++                 R +
Sbjct: 367 PDWDGV----IPPPAVIKPKPLWTGKQLLSMAIPKGIHIQ-----------------RLD 405

Query: 493 GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
           G   +    + P D  +   + E++ G + K T+G     GL   ++R+ G    +   +
Sbjct: 406 GGTSM----LSPKDTGILIVDGEIMFGVVDKKTVG-ATSGGLIHTVMREKGPQVCAKLFS 460

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
            L K+   W+ ++GFSIGI D     +        I E  +     I +  + +L+ +PG
Sbjct: 461 ALQKVVNYWLLHNGFSIGIGDTIADSDTMKTVTTTIEEAKQKVQEIILDAQKNRLEPEPG 520

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
               ++ E  ++ +LN+ R+ AG++   +L   N+   M   GSKGS INISQM ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQ 580

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           Q V G+R P GF DRSLPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DT
Sbjct: 581 QIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           AVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D   +E +S
Sbjct: 641 AVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGVDGTQVESQS 695


>gi|397135856|gb|AFO11423.1| RNA polymerase I, partial [Saturnispora dispora]
          Length = 870

 Score =  504 bits (1297), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 292/714 (40%), Positives = 430/714 (60%), Gaps = 47/714 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           ++P +VL +FK+++  D   L  +E   RPE +I+T + VPP  +RPSV    S+ +E+D
Sbjct: 15  IHPSDVLNVFKQISKEDSNKLGFNEEWARPEWMILTVLPVPPPPVRPSVAFTDSKRSEDD 74

Query: 143 ITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ 197
           +T +L  I++ N ++Q+  ++ +     S F++L     LQ  VA Y+++D+ G P ++Q
Sbjct: 75  LTYKLADILKANINVQKFEMDGSPQHVISEFEAL-----LQYHVATYMDNDIAGQPQALQ 129

Query: 198 VA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTY 256
            + RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +AR LTY
Sbjct: 130 KSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPRSIARTLTY 189

Query: 257 PERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDR 315
           PE V+ +NI+KL + ++NGP+++PGA+ +   +G    L  +F  +   ++L+ G  V+R
Sbjct: 190 PEIVTPYNIQKLTEMVRNGPNEHPGAKYVIRDNGDRIDL--RFNKRAGDIQLQYGWKVER 247

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           HL D D VLFNRQPSLH+MS+MCHR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+
Sbjct: 248 HLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQS 307

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM- 434
            E R E   +  V   + +P++ + ++   QD L     +T +D F +      MC ++ 
Sbjct: 308 YETRAELSQIAAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMCYWIP 367

Query: 435 -GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
             DG+    +P P ILKP  LW+GKQ+ S+ I P                    L R +G
Sbjct: 368 EWDGV----IPPPCILKPKPLWSGKQMMSLCI-PKGIF----------------LQRLDG 406

Query: 494 DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
                   + P D  +   N E++ G + KAT+G+ +  GL    +R+ G    +     
Sbjct: 407 ------SLLSPKDSGMLIMNGEIMFGVVNKATVGS-SAGGLIHTTMREKGPTICARMFGN 459

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
           + K+   W+ ++GFSIGI D     E      + I E  E   + IK+  +  L+ +PG 
Sbjct: 460 IQKVINYWLLHNGFSIGIGDAIADPETMKTITETIKEAKEKVQLVIKDAQQNLLEPEPGM 519

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              ++ E  ++ ILN  R+ AGK+   SL   N+   M   GSKGS INISQM ACVGQQ
Sbjct: 520 TVRESFEQKVSKILNEARDSAGKSAETSLKNSNNVKQMVTAGSKGSYINISQMSACVGQQ 579

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
            V G+R   GF DRSLPHF +      +KGFV NS+  GL+  EFFFH M GREGL+DTA
Sbjct: 580 IVEGKRINFGFADRSLPHFTKDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTA 639

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           VKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QFLYG+DG+D  ++E ++
Sbjct: 640 VKTAETGYIQRRLLKALEDIMVHYDGTTRNSLGDIIQFLYGEDGLDGTSVEKQT 693


>gi|327294163|ref|XP_003231777.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
           CBS 118892]
 gi|326465722|gb|EGD91175.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
           CBS 118892]
          Length = 1744

 Score =  504 bits (1297), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 302/711 (42%), Positives = 418/711 (58%), Gaps = 46/711 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QSN 139
           + P   L +F+ +++ D  ++ LS    RPE +IIT + VPP  +RPSV++ GS   Q  
Sbjct: 215 ITPQMALTIFRNISEEDVRLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGTGQRG 274

Query: 140 ENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVPF 194
           E+D+T +L  II+ N ++ +   E +       F+SL     LQ  VA Y+++D+ G+P 
Sbjct: 275 EDDLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESL-----LQYHVATYMDNDIAGIPQ 329

Query: 195 SMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           +MQ + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +PI +A+ 
Sbjct: 330 AMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQT 389

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY----GKFRNQLAVELKS 309
           LTYPE V+ +NI +L Q + NGPD +PGAR +    G    L     G  RN L    + 
Sbjct: 390 LTYPEVVTPYNIHRLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFL----QW 445

Query: 310 GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMN 369
           G  V+RHL DGD +LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMN
Sbjct: 446 GWKVERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMN 505

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +HVPQ+EEAR E   L  V  N+ +P+    L+   QD L   + I R+D F  +     
Sbjct: 506 LHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMN 565

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           +  ++ D  D V LP PAILKP   W+GKQ+ S+++    N                 L+
Sbjct: 566 VLLWVPD-WDGV-LPQPAILKPRPRWSGKQMISMVLPSGLN-----------------LL 606

Query: 490 RTEGDEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
           R + D+    E   P  DG V     EL+ G   K T+G  +  G+   +  +YG  A  
Sbjct: 607 RIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVG-ASGGGIVHTIFNEYGPDAAM 665

Query: 549 GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
              N    +   W+ ++GFSIGI D  P  E   K    +    E  +       E  L+
Sbjct: 666 SFFNGAQAVVNYWLLHNGFSIGIGDTIPDLETIQKIENAVRVRKEEVDSITASATENTLE 725

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
             PG +  +T E+ ++  LN  R++AG A   SL   N+ + M++ GSKGS INISQM A
Sbjct: 726 ALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTA 785

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            VGQQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREG
Sbjct: 786 VVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREG 845

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           L+DTAVKTA+TGY+ R+L+KALE++ ++YD +VRN+ G IVQFLYG+DG+D
Sbjct: 846 LIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIVQFLYGEDGLD 896



 Score =  192 bits (489), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 127/402 (31%), Positives = 202/402 (50%), Gaps = 54/402 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+       G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A  
Sbjct: 1073 SRFGKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATN 1132

Query: 955  ISTPIITA--ELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T     EC  N+ +A+ ++  +E T L  V +S +I     + S VI  D++ +
Sbjct: 1133 IKTPSMTVYQAPECRMNKESAKQLRSIVEHTSLRSVTESTEIYYDPNIQSTVIENDIDMV 1192

Query: 1013 QDAHLCINADIVKES----------IVQTPKI------------KLKQQHIK-------- 1042
            + ++  I  D+  +S          I+  PK+            K+K+ + +        
Sbjct: 1193 E-SYFIIPEDVADDSSRQSKWLLRIILSRPKLLDKGLTVQDVATKIKEAYPQDIAVIFSD 1251

Query: 1043 ------VLDFRKLEIFPPVDKSKIHFELYSLK----NVLPMVIVKGIKTVERVVIAEKEK 1092
                  V+  R+++     +         +LK    ++L  + ++G+  ++R  I   EK
Sbjct: 1252 NNADEQVVRIRQIQDPKQDEDDDDTEYDVTLKKLESHLLDTLTLRGVPGIDRAFI--NEK 1309

Query: 1093 EKRKVKENG---------EKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
             + +V E+G         E K++ L   G+ L  V+   GID  +T SN   E+ +  GI
Sbjct: 1310 SRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDASRTYSNQFVEILEVFGI 1369

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            EA R  ++ E+ + +   G  ++ RH+ LL D+MT RG ++ +TR GI + D   LM  S
Sbjct: 1370 EATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRCS 1429

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            FE+T + L +A+     D   GVSE +I+G   P GTG   +
Sbjct: 1430 FEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDV 1471


>gi|324120580|dbj|BAJ78681.1| RNA polymerase II largest subunit [Stichotrema asahinai]
          Length = 1696

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 274/692 (39%), Positives = 411/692 (59%), Gaps = 26/692 (3%)

Query: 94  LFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
           + K +TD +C ++ +     RP+ +I++ I VPP+++RP+V+M GS  N++D+T +L  I
Sbjct: 213 IMKHITDEECYIMGMDPKFARPDWMIVSAIPVPPLSVRPAVVMYGSTRNQDDLTHKLADI 272

Query: 151 IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRL 209
           I+ N  LQ+      +        + LQ  VA +I++D+ G+P +MQ + +PL     RL
Sbjct: 273 IKANNELQRNETSGAAVHVLAENIKMLQYHVATFIDNDIPGLPKAMQKSGKPLKALKARL 332

Query: 210 KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
           KGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ LT+PE V+  N +K+ 
Sbjct: 333 KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFQKMM 392

Query: 270 QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLEDGDVVLFNRQ 328
           + +  G  +YPGA+ I   +G    L  +F  + + + ++ G  V+RH+ DGD+V+FNRQ
Sbjct: 393 ELVHRGNSQYPGAKYIIRENGERIDL--RFHPKPSDLHIQCGYKVERHIRDGDLVIFNRQ 450

Query: 329 PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGV 388
           P+LH+MS+M HR +++PW T R N S   PYNADFDGDEMN+HVPQ+ E R E   L   
Sbjct: 451 PTLHKMSMMGHRVKVLPWSTFRMNLSCTTPYNADFDGDEMNLHVPQSMETRAEVEHLHIT 510

Query: 389 QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLPTP 446
              + TP+    ++   QD LT+   +T++D F ++      LM   + DG     +P P
Sbjct: 511 PRQIITPQANRPVMGIVQDTLTAVRKMTKRDVFLEKEQVMNILMFLPIWDG----KMPKP 566

Query: 447 AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPND 506
           AI+KP  +WTGKQ+FS++I  +      VNL     T+ ++      ++E     + P D
Sbjct: 567 AIIKPKPMWTGKQIFSLIIPGN------VNLIRTHSTHPDE------EDEGPYRWISPGD 614

Query: 507 GFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHG 566
             V   + EL+ G L K TLG  +   L  +   + G          +  +   W+   G
Sbjct: 615 TKVMVEHGELVMGILCKKTLGT-SAGSLLHICYLELGHEVCGRFYGNIQTVVNNWLLYEG 673

Query: 567 FSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDI 626
            SIGI D     +   +  K I +  E     I++ +  +L+  PG    QT E  +  I
Sbjct: 674 HSIGIGDTIADPQTYVEIQKAIKKAKEDVMQVIQKAHNMELEPTPGNTLRQTFENQVNRI 733

Query: 627 LNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFID 686
           LN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P GF  
Sbjct: 734 LNDARDKTGGSAKKSLTEHNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 793

Query: 687 RSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRL 746
           R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKTA+TGY+ RRL
Sbjct: 794 RTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRL 853

Query: 747 IKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
           IKA+E + + YD +VRN+ G ++QF YG+DG+
Sbjct: 854 IKAMESVMVHYDGTVRNSVGQLIQFRYGEDGL 885



 Score =  119 bits (299), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 107/183 (58%), Gaps = 6/183 (3%)

Query: 1069 NVLPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAE 1122
            NVL  + ++GI+++ +V +   + + +K   + E+GE K   ++ L  +GT L  V+   
Sbjct: 1280 NVLSDMTLQGIESISKVYMHLPQSDSKKRIIITESGEYKAIAEWLLETDGTSLMKVLSER 1339

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
             +D  +T SN I E+   LGIEA R  +  E+N  ++ +G+ ++ RH+ LL D+MT +G 
Sbjct: 1340 DVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGH 1399

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            ++ ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    +GTG 
Sbjct: 1400 LMAITRHGINRQDTGALMRCSFEETVDILMDAAAHAEVDPMRGVSENIIMGQLPRMGTGC 1459

Query: 1243 LKI 1245
              +
Sbjct: 1460 FDL 1462



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 77/135 (57%), Gaps = 4/135 (2%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R++  +V  G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1049 LSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1108

Query: 941  GVPRIKEIINGAKRISTPIITAEL---ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            GVPR+KEIIN +KR   P +T  L      D E A  V+  R+E T L +V  +  I   
Sbjct: 1109 GVPRLKEIINISKRPKAPSLTVFLTGAAARDAEKAKNVL-CRLEHTTLRKVTANTAIYYD 1167

Query: 998  SRLASIVIALDMETI 1012
                + VI  D E +
Sbjct: 1168 PDPQNTVIPEDQEFV 1182


>gi|397135934|gb|AFO11462.1| RNA polymerase I, partial [Candida petrohuensis]
          Length = 868

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 291/714 (40%), Positives = 423/714 (59%), Gaps = 43/714 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  VL +FK ++  D   + LSE   RPE +IIT + VPP  +RPS+ ++ +   E+
Sbjct: 14  VLTPTEVLNVFKHISKEDVTRMGLSEDYARPEWMIITVLPVPPPPVRPSIAINDTARGED 73

Query: 142 DITERLKRIIQTNASLQ---QELVEAN--SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  I++ N ++Q   Q+   A+  + F++L     LQ  VA Y+++D+ G P ++
Sbjct: 74  DLTYKLADILKANGNVQRCEQDGAPAHVINEFEAL-----LQYHVATYMDNDIAGQPQAL 128

Query: 197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + +V +P  +AR LT
Sbjct: 129 QKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSIARTLT 188

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
           YPE V+ +NI +L Q ++NGP+++PGA+ +   D   R+     +    + L+ G  V+R
Sbjct: 189 YPEIVTPYNIHRLTQLVRNGPNEHPGAKYV-IRDTGERIDLRYHKRAGDIALQYGWKVER 247

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           H++DGD  LFNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+
Sbjct: 248 HIDDGDPXLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 307

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCY 433
           EE R E   L  V   + +P++ + ++   QD L     +T++DTF  +D+    L    
Sbjct: 308 EETRAELSQLCMVPLQIISPQSNKPVMGIVQDTLCGIRKLTKRDTFVEFDQVMNLLFWIP 367

Query: 434 MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
             DG+    +P PA+LKP  LWTGKQ+ S+ I     M+ +                   
Sbjct: 368 DWDGV----VPQPAVLKPKPLWTGKQIVSLCIPKGIFMQRF------------------- 404

Query: 494 DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
           D++  I +  P D  +     E+I G + K T+G     GL   ++R+ G          
Sbjct: 405 DDQNPITS--PKDNGMLIAKGEVIYGVVDKKTVG-ATAGGLIHTIMREKGPQICCNFFGN 461

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
           L K+   W+ ++GFSIGI D              I+E        I E    KL  +PG 
Sbjct: 462 LQKVVNYWLLHNGFSIGIGDTIADAATMKDITNTIAEAKNKVQEIILEAQANKLAPEPGM 521

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              ++ E  ++ +LN+ R+ AG++   SL   N+   M   GSKGS INISQM ACVGQQ
Sbjct: 522 TLRESFEHNVSRVLNQARDTAGRSAEMSLKELNNVKQMVIAGSKGSFINISQMSACVGQQ 581

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
            V G+R P GF DRSLPHF +    P +KGF+ NS+  GL+  EFFFH M GREGL+DTA
Sbjct: 582 IVEGKRIPFGFQDRSLPHFTKDDHSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTA 641

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           VKTA+TGY+ RRL+KALED+ +QYD + RN+ G ++QF+YG+DG+D   +E ++
Sbjct: 642 VKTAETGYIQRRLVKALEDVMVQYDGTTRNSLGDVIQFVYGEDGLDGTQVEKQT 695


>gi|302662921|ref|XP_003023110.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
 gi|291187089|gb|EFE42492.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
          Length = 1744

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 302/711 (42%), Positives = 418/711 (58%), Gaps = 46/711 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QSN 139
           + P   L +F+ +++ D  ++ LS    RPE +IIT + VPP  +RPSV++ GS   Q  
Sbjct: 215 ITPQMALTIFRNISEEDVRLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGTGQRG 274

Query: 140 ENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVPF 194
           E+D+T +L  II+ N ++ +   E +       F+SL     LQ  VA Y+++D+ G+P 
Sbjct: 275 EDDLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESL-----LQYHVATYMDNDIAGIPQ 329

Query: 195 SMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           +MQ + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +PI +A+ 
Sbjct: 330 AMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQT 389

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY----GKFRNQLAVELKS 309
           LTYPE V+ +NI +L Q + NGPD +PGAR +    G    L     G  RN L    + 
Sbjct: 390 LTYPEVVTPYNIHRLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFL----QW 445

Query: 310 GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMN 369
           G  V+RHL DGD +LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMN
Sbjct: 446 GWKVERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMN 505

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +HVPQ+EEAR E   L  V  N+ +P+    L+   QD L   + I R+D F  +     
Sbjct: 506 LHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMN 565

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           +  ++ D  D V LP PAILKP   W+GKQ+ S+++    N                 L+
Sbjct: 566 VLLWVPD-WDGV-LPQPAILKPRPRWSGKQMISMVLPSGLN-----------------LL 606

Query: 490 RTEGDEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
           R + D+    E   P  DG V     EL+ G   K T+G  +  G+   +  +YG  A  
Sbjct: 607 RIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVG-ASGGGVVHTIFNEYGPDAAM 665

Query: 549 GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
              N    +   W+ ++GFSIGI D  P  E   K    +    E  +       E  L+
Sbjct: 666 SFFNGAQAVVNYWLLHNGFSIGIGDTIPDLETIQKIENAVRVRKEEVDSITASATENTLE 725

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
             PG +  +T E+ ++  LN  R++AG A   SL   N+ + M++ GSKGS INISQM A
Sbjct: 726 ALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTA 785

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            VGQQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREG
Sbjct: 786 VVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREG 845

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           L+DTAVKTA+TGY+ R+L+KALE++ ++YD +VRN+ G IVQFLYG+DG+D
Sbjct: 846 LIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIVQFLYGEDGLD 896



 Score =  192 bits (489), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 127/402 (31%), Positives = 202/402 (50%), Gaps = 54/402 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+       G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A  
Sbjct: 1073 SRFGKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATN 1132

Query: 955  ISTPIITA--ELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T     EC  N+ +A+ ++  +E T L  V +S +I     + S VI  D++ +
Sbjct: 1133 IKTPSMTVYQAPECRMNKESAKQLRSIVEHTSLRSVTESTEIYYDPNIQSTVIENDIDMV 1192

Query: 1013 QDAHLCINADIVKES----------IVQTPKI------------KLKQQHIK-------- 1042
            + ++  I  D+  +S          I+  PK+            K+K+ + +        
Sbjct: 1193 E-SYFIIPEDVADDSSRQSKWLLRIILSRPKLLDKGLTVQDVATKIKEAYPQDIAVIFSD 1251

Query: 1043 ------VLDFRKLEIFPPVDKSKIHFELYSLK----NVLPMVIVKGIKTVERVVIAEKEK 1092
                  V+  R+++     +         +LK    ++L  + ++G+  ++R  I   EK
Sbjct: 1252 NNADEQVVRIRQIQDPKQDEDDDDTEYDVTLKKLESHLLDTLTLRGVPGIDRAFI--NEK 1309

Query: 1093 EKRKVKENG---------EKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
             + +V E+G         E K++ L   G+ L  V+   GID  +T SN   E+ +  GI
Sbjct: 1310 SRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDASRTYSNQFVEILEVFGI 1369

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            EA R  ++ E+ + +   G  ++ RH+ LL D+MT RG ++ +TR GI + D   LM  S
Sbjct: 1370 EATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRCS 1429

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            FE+T + L +A+     D   GVSE +I+G   P GTG   +
Sbjct: 1430 FEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDV 1471


>gi|324120530|dbj|BAJ78656.1| RNA polymerase II largest subunit [Aposthonia japonica]
          Length = 1697

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 291/777 (37%), Positives = 448/777 (57%), Gaps = 35/777 (4%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           V  + K +TD +C +L +     RP+ +I+T + VPP+++RP+V+M GS  N++D+T +L
Sbjct: 192 VWEILKHITDEECFILGMDPKFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKL 251

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II++N  L +      +A       + LQ  VA  +++D+ G+P +MQ + +PL    
Sbjct: 252 SDIIKSNNELVRNEQAGAAAHVIAENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIK 311

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ LT+PE V+  NI+
Sbjct: 312 SRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 371

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           K+++ ++ G  +YPGA+ I   +G  R+          + L+ G  V+RH+ DGD+V+FN
Sbjct: 372 KMQELVRRGNSQYPGAKYIVRDNG-ERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFN 430

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQP+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R E   L 
Sbjct: 431 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLH 490

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLP 444
                + TP+  + ++   QD L +   +T++D F ++      LM   + DG     +P
Sbjct: 491 VTPRQIITPQANQPVMGIVQDTLVAVRKMTKRDVFLEKEQMMNILMFLPIWDG----KMP 546

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAILKP  LWTGKQ+FS++I  + N+          +T+S      + ++E   + + P
Sbjct: 547 QPAILKPKPLWTGKQVFSLIIPGNVNLI---------RTHST---HPDDEDEGPYKWISP 594

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  V   + EL+ G L K TLG  +   L  +   + G          +  +   W+  
Sbjct: 595 GDTKVMVEHGELVMGILCKKTLGT-SAGSLLHICFLELGHDVCGQFYGNIQTVINNWLLY 653

Query: 565 HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
            G SIGI D     +   +  K I +  E     I++ +  +L+  PG    QT E  + 
Sbjct: 654 EGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVN 713

Query: 625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
            ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P GF
Sbjct: 714 RILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGF 773

Query: 685 IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
             R+LPHF +    P ++GFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA+TGY+ R
Sbjct: 774 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 833

Query: 745 RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATC 804
           RLIKA+E + + YD +VRN+ G ++Q  YG+DG+    +E +  + +       + +   
Sbjct: 834 RLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQYIQTVKLSNKAFERRFKF 893

Query: 805 PPAGQRYLSPQQVSEIVEKQLAAYGK---------ESCSEAFLNSLRKFFEGQQDKL 852
            P  +R+L  +  +E V ++L   G+         E  S+   ++LR+ F G ++K+
Sbjct: 894 DPTNERHLR-RIFNEDVLRELMGSGEVIQELEKEWEQLSKD-RDALRQIFPGGENKV 948



 Score =  177 bits (450), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 136/421 (32%), Positives = 209/421 (49%), Gaps = 63/421 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R++  +   G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1031 LSSEAFEWLIGEIETRFQQAQCNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1090

Query: 941  GVPRIKEIINGAKRISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKI--- 994
            GVPR+KEIIN +KR   P +T  L      D E A  V+  R+E T L +V  +  I   
Sbjct: 1091 GVPRLKEIINISKRPKAPSLTVFLTGAAARDAEKAKNVL-CRLEHTTLRKVTANTAIYYD 1149

Query: 995  ------VMT-----------------SRLASIV--IALDMETIQDAHL------------ 1017
                  V+T                 +R++  +  I LD + + D  L            
Sbjct: 1150 PDPQNTVITEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAG 1209

Query: 1018 ------CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NV 1070
                  CI  D   E +V   +I +     K  D  +      VDK +    L  ++ N+
Sbjct: 1210 FGDDLNCIFNDDNAEKLVLRIRI-MNSDDNKFQDEEET-----VDKMEDDMFLRCIEANM 1263

Query: 1071 LPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGI 1124
            L  + ++GI+ + +V +   + + +K   + +NGE K   ++ L  +GT +  V+    +
Sbjct: 1264 LSDMTLQGIEAIAKVYMHLPQTDAKKRIIITDNGEFKAIAEWLLETDGTSMMKVLSERDV 1323

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
            D  +T SN I E+   LGIEA R  +  E+N  +  +G+ ++ RH+ LL D+MT +G ++
Sbjct: 1324 DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLM 1383

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
             ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    LGTG   
Sbjct: 1384 AITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFD 1443

Query: 1245 I 1245
            +
Sbjct: 1444 L 1444


>gi|170100352|ref|XP_001881394.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644073|gb|EDR08324.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1742

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 294/715 (41%), Positives = 423/715 (59%), Gaps = 31/715 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNE 140
           ++ P  V  +FK+M+D D  +L LS+   RPE +I+T + VPP  +RPS+ +DG +  +E
Sbjct: 206 LITPSEVYTVFKKMSDHDLHLLGLSDEYARPEWMILTVMPVPPPPVRPSIAVDGGAMRSE 265

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA- 199
           +D+T +L  II+ +A++++   E   A       + LQ  VA Y+++D+ G+P ++Q + 
Sbjct: 266 DDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQLLQFHVATYMDNDIAGIPQALQKSG 325

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ EV +P  +A  LTYPER
Sbjct: 326 RPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPER 385

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI  L++ ++NGP  YPGAR +    G    L  ++  +    L+ G IV+RHL+D
Sbjct: 386 VTPYNIAYLQELVRNGPTAYPGARYVVRDTGERIDL--RYNKRADAFLQYGWIVERHLKD 443

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD VLFNRQPSLH+MS+M HR ++M + T R N SV  PYNADFDGDEMNMHVPQ+EE R
Sbjct: 444 GDFVLFNRQPSLHKMSMMSHRVKLMYYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETR 503

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   +  V   + +P+  + ++   QD L      T +DTF D      +  ++ +   
Sbjct: 504 AELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPEWDG 563

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
            V  P PAILKP  LWTGKQ+ S+ I P       +N+       S+  +  +G      
Sbjct: 564 SV--PIPAILKPKPLWTGKQILSLAI-PRG-----INIHRSPDPKSSNPVFDDG------ 609

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
                    V   N ELI G + K T+G  ++ GL  V+ R+ G  AT      L  +  
Sbjct: 610 ---------VLIENGELIFGIVEKKTVG-ASQGGLVHVVFREKGPEATRQLFTGLQMVVN 659

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
            W+ ++GFSIGI D    +       + I+++       I +    +L+  PG    ++ 
Sbjct: 660 YWLFHNGFSIGIGDTIADRGTMSYITQTIADSKANVAKIINDATHDRLKAAPGMTIRESF 719

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E+++   LN  R+ +G+     L   N+   M   GSKGS INISQM  CVGQQSV GRR
Sbjct: 720 ESLVERQLNLARDTSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGRR 779

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+T
Sbjct: 780 IPFGFRHRTLPHFTKDDFSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET 839

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFD 794
           GY+ RRL+KALED+ + YD +VRN+ G ++QF+YG+DGMD A +E ++ E    D
Sbjct: 840 GYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMDGAFIEKQTIETFGLD 894



 Score =  189 bits (481), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 129/412 (31%), Positives = 206/412 (50%), Gaps = 48/412 (11%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            +T +  +  +    +++    V  G   G + AQSIGEP TQMTL TFH+AGV+S N+T 
Sbjct: 1044 LTREAFDWVMGEVETKFNQSVVHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTL 1103

Query: 941  GVPRIKEIINGAKRISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN A  I TP +T  L  E   + + A+ V+  +  T L  V  +++I    
Sbjct: 1104 GVPRLKEIINVATNIKTPSLTVHLDPEIAVSSSLAKNVQQELAYTSLRTVTAAVEIWYDP 1163

Query: 999  RLASIVIALDMETIQDAHLCINADIVKESIVQTPKI-KLKQQHIKVLDFRKLEIFPPVDK 1057
              +S +I  D   ++      + +I  +  +Q+P + +L+    K++D RKL +     +
Sbjct: 1164 DPSSTIIEEDSVFVESFFAIPDEEIESKLHLQSPWLLRLELDRAKMID-RKLTMHYVASR 1222

Query: 1058 SKIHFE-----LYSLKNVLPMVI------------------------------------V 1076
                F+     ++S  N   +VI                                    +
Sbjct: 1223 IAESFKTDLFVIWSEDNSEKLVIRCRVLGSADKEDDGNGTIEEDIFLRQLENTMLNSVSL 1282

Query: 1077 KGIKTVERVVIAEKEK---EKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNH 1133
            +G+K + RV + E +K    K    +NG++K++ L  +G  L+ VM  +G+D  +T SN 
Sbjct: 1283 RGVKGINRVFLMENDKITIAKDGSIKNGQEKEWVLETDGVNLKTVMCIDGVDFKRTYSNS 1342

Query: 1134 IFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQK 1193
              E+   LGIEAAR  I+ E+   ++  G  ++ RH+ LL DLMT RG ++ ITR GI +
Sbjct: 1343 CVEIFNVLGIEAARAAIMKELRGVIEFDGSYVNYRHLALLCDLMTHRGTLMAITRHGINR 1402

Query: 1194 MDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             D   LM  SFE+T + L  A+  G  D   GV+E ++ G   P+GTG  ++
Sbjct: 1403 ADTGALMRCSFEETVEILMEAAAVGEKDDCHGVAENVMFGQMAPMGTGAFEV 1454


>gi|392596906|gb|EIW86228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Coniophora puteana RWD-64-598 SS2]
          Length = 1746

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 290/705 (41%), Positives = 422/705 (59%), Gaps = 31/705 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS-QSNE 140
           +  P  V   FK+M D D  ++ LS+   RPE +I+T + VPP  +RPS+ +DG    +E
Sbjct: 210 LFTPSEVYTTFKKMVDQDLHLVGLSDEYARPEWMILTVMPVPPPPVRPSIAVDGGVMRSE 269

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA- 199
           +D+T +L  II+ +A++++   E   A       + LQ  VA Y+++D+ G+P ++Q + 
Sbjct: 270 DDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQLLQFHVATYMDNDIAGIPQALQKSG 329

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ EV +P  +A  LTYPER
Sbjct: 330 RPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDEVGVPRSIAMNLTYPER 389

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI  L++ ++NGP  YPGAR +    G    L  ++  +    L+ G IV+RHL+D
Sbjct: 390 VTPYNIAYLQELVRNGPTTYPGARYVVRDTGERIDL--RYNKRADAFLQYGWIVERHLKD 447

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD VLFNRQPSLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMNMH+PQ+EE R
Sbjct: 448 GDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEETR 507

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   +  V   + +P+  + ++   QD L      T +DTF +      +  ++ D   
Sbjct: 508 AELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFMEWNQVQNILLWVPDWDG 567

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
            V  P PAI KP  LWTGKQ+ S++I    N++        E   SN +     D+ I I
Sbjct: 568 NV--PPPAIFKPKPLWTGKQILSMVIPRGINIQ-----RAAEPKSSNPVF----DDGILI 616

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
           E            N E+I G + K T+G  ++ GL  V+ R+ G  AT      +  +  
Sbjct: 617 E------------NGEIIYGIVEKKTVG-ASQGGLIHVVFREKGPEATRDLFTGIQVVVN 663

Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
            W+ ++GFSIGI D     ++      +I    ++ +  +++    +L+  PG    ++ 
Sbjct: 664 YWLFHNGFSIGIGDTVAGPKVMTHITNVIQGKKKLVSEIVEDAYHDRLKALPGMTIRESF 723

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E+ +   LNR R+++G+    +L   N+   M   GSKGS INISQM  CVGQQSV G+R
Sbjct: 724 ESKVERELNRARDESGQYAQKNLSDDNNVKQMVVAGSKGSYINISQMSVCVGQQSVEGKR 783

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+T
Sbjct: 784 IPFGFRHRTLPHFTKDDFSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET 843

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           GY+ RRL+KALED+ + YD +VRN+ G ++QF+YG+DGMD A +E
Sbjct: 844 GYIQRRLVKALEDVMVHYDGTVRNSLGDLLQFVYGEDGMDGAFIE 888



 Score =  186 bits (472), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 126/398 (31%), Positives = 201/398 (50%), Gaps = 50/398 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +++    V  G   G + AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEIIN A  
Sbjct: 1062 TKFNQSLVHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINTAVN 1121

Query: 955  ISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T  L  + + N ++A+ V+  +  T L  V  +++I      +S +I  D   +
Sbjct: 1122 IKTPSLTVYLDPQISRNPDSAKNVQQELAYTSLRTVTAAVEIWYDPDPSSTIIEEDQVFV 1181

Query: 1013 QDAHLCINADIVKESIVQTPKI-KLKQQHIKVLDFRKLEIFPPVDKSKIHFE-----LYS 1066
            +      + ++  +  +Q+P + +L+    K+LD RKL +     +    F+     ++S
Sbjct: 1182 EAFFAIPDEEVESKLHLQSPWLLRLELDRAKMLD-RKLTMAYVAGRIAESFKTDLFVIWS 1240

Query: 1067 LKNVLPMVI------------------------------------VKGIKTVERVVIAEK 1090
              N   +VI                                    ++G+K + RV +  +
Sbjct: 1241 EDNSDKLVIRCRVLGGADKDDDGMESVEEDIFLRQLETTMLNSISLRGVKGINRVFL--Q 1298

Query: 1091 EKEKRKVKENGE---KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAAR 1147
            E++   + + G    KK++ L  +G  L+ VM   G+D  +T SN+  EV   LG+EAAR
Sbjct: 1299 EQDDIYINDEGSIATKKEWVLETDGVNLKTVMTISGVDFRRTYSNNCTEVFDVLGVEAAR 1358

Query: 1148 ICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKT 1207
              I+ E+   ++  G  ++ RH+ LL DLMT RG ++ ITR GI + D   LM  SFE+T
Sbjct: 1359 AAIMKELRNVIEFDGSYVNYRHLSLLCDLMTQRGHLMAITRHGINRADTGALMRCSFEET 1418

Query: 1208 ADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             + L  A+  G  D   GV+E ++ G   P+GTG   +
Sbjct: 1419 VEILMEAAAVGEKDDCHGVAENVLFGQMAPMGTGAFDV 1456


>gi|337263096|gb|AEI69259.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
           romaleae]
 gi|396081019|gb|AFN82638.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
           romaleae SJ-2008]
          Length = 1515

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 293/773 (37%), Positives = 443/773 (57%), Gaps = 51/773 (6%)

Query: 80  NVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGS 136
           N    +LN   V  +FK+++D DC  +       RPE +I T + VPP ++RPS++M+GS
Sbjct: 167 NEGKVMLNGERVYSIFKKISDEDCVYMGFDLKYSRPEWMIFTVLLVPPPSVRPSIVMEGS 226

Query: 137 QSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
              E+D+T +L  II++N  L++   E           + LQ  VA  I++D+ G P ++
Sbjct: 227 LRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATLIDNDIGGQPQAL 286

Query: 197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q + RPL     RLKGK+GR RGNL GKRV+++ RTVI+PDPN+ + EV +P+ +A++ T
Sbjct: 287 QKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPNISLEEVGVPLEVAKVHT 346

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
           +PE+V+  NI+KL + ++ GP+++PGA  +   DG    L   F N+  + L+ G IV+R
Sbjct: 347 FPEKVTSFNIDKLEKLVRTGPNEHPGANYVLRSDGQKIDL--NF-NKSDIRLEEGYIVER 403

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           H++ GDVVLFNRQPSLH+MS+M H AR+M  +T R N SV +PYNADFDGDEMN+H+PQ+
Sbjct: 404 HMQTGDVVLFNRQPSLHKMSMMAHYARVMDDKTFRLNLSVTSPYNADFDGDEMNLHMPQS 463

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLM----- 430
             ++ E   L  V   + +P++ + ++   QD LT   L T +DTF +     L+     
Sbjct: 464 YTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMLLLYAVN 523

Query: 431 ---CCYMGDGMDRVDL------------PTPAILKPVELWTGKQLFSVLIRPHANMRVYV 475
              C     G   ++L              PAI KP++LWTGKQ+ S ++ P+ N   YV
Sbjct: 524 IEFCDTPPGGTSYMELRRTKDYDIMKVLKRPAIAKPMKLWTGKQILSFVL-PNMN---YV 579

Query: 476 NLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLY 535
             + +     N+ I    D ++ I+     DG+++   S +I  +   AT G     GL 
Sbjct: 580 GFSSEHNDNDNENI---SDTKVIIQ-----DGYIH---SGVIDKKAAGATQG-----GLV 623

Query: 536 SVLLRDYGAHATSGCMNRLAKLSARWI-GNHGFSIGIDDVQPKKELSDKKGKLISENYEV 594
            ++  D+G    +   N + ++   ++ G H FSIGI D     +      + I +  E 
Sbjct: 624 HIIFNDFGPKRAAQFFNGVQRMINVFMTGIHTFSIGIGDTIADAKTVKMVKEAIRKAKEE 683

Query: 595 CNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQC 654
            +V I+   + +L+  PG    ++ E+ +  +LNR R+ +G +   SL   N+   M   
Sbjct: 684 VSVIIENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSENNNMKTMVLA 743

Query: 655 GSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLS 714
           GSKGS INISQ+ ACVGQQ+V G+R P GF  R+LPHF +      ++GFV NS+ +GL 
Sbjct: 744 GSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGRSRGFVENSYLTGLD 803

Query: 715 ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYG 774
             EFFFH MGGREGL+DTA+KTA+TGY+ RRL+KALED  ++ D SVR+  G + Q  YG
Sbjct: 804 PEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLMYQIKYG 863

Query: 775 DDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAA 827
           +DG D   +E +  +  NF +   +       +G+  +   QVSE V   L++
Sbjct: 864 EDGFDATFLESQKVDVKNFTK---RYYIDMFGSGELAIKQDQVSEEVYGMLSS 913



 Score =  167 bits (424), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 129/407 (31%), Positives = 211/407 (51%), Gaps = 55/407 (13%)

Query: 901  RVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPII 960
            R+     +G + AQS+GEP TQMTL TFH AGV+S  +T GVPR+KEI N  K + TP +
Sbjct: 1042 RITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSS-TVTMGVPRLKEIFNVTKNLKTPSM 1100

Query: 961  TAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ---- 1013
               L+   C   E +A+V++  IE   +  +  S +I     + S  IA D + ++    
Sbjct: 1101 KIYLDKDHCKTIE-SAKVIQNEIECLCVKDLCLSSEIYYDPEITSTEIAEDKDFVETYFE 1159

Query: 1014 ----DAHLCINADIVKESIVQTPKIKLKQQHIKVL--DFRK-----------------LE 1050
                D      +  +   IV   K+  +  +++ +    RK                 + 
Sbjct: 1160 FPDDDVDFSCLSPFLMRLIVDRAKLVGRGANLEYVAESIRKELGSGAHVICSDENAVHMV 1219

Query: 1051 IFPPVDKSK---IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYR 1107
            I   V KS+   ++F +  L ++L + + +G K+V++V I+E +          +KK++ 
Sbjct: 1220 IRIRVGKSEDESLNFYMTILNSLLKLQL-RGYKSVKKVYISEDK----------DKKEWY 1268

Query: 1108 LLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDK 1167
            L  +GT L  V+G   ++   T SN + E+ +TLGIEAAR  I+ E+   +  +G  ++ 
Sbjct: 1269 LQTDGTCLPQVLGNPAVNSRLTISNDLIEIAETLGIEAARESILRELAMVIDGNGSYVNY 1328

Query: 1168 RHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVS 1227
            RHM LLAD+MT RG + GITR G+ K     L  +SFE+T + L +A++    +   G++
Sbjct: 1329 RHMSLLADVMTMRGYLCGITRHGVNKAGAGALKRSSFEETVEILLDAALVSEKNLCRGIT 1388

Query: 1228 ECIIMGIPMPLGTG----ILKIRQRD-AVP---PMLKYGAP-DPIMS 1265
            E I+MG   P+GTG    +L +++ D A+P   P+ K   P  P++S
Sbjct: 1389 ENIMMGQLAPMGTGNVEIMLDVKKLDKAIPLSNPVFKPNEPVTPVIS 1435


>gi|57472114|gb|AAW51135.1| RNA polymerase II largest subunit [Calostoma cinnabarinum]
          Length = 994

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 293/707 (41%), Positives = 425/707 (60%), Gaps = 34/707 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNE 140
           +  P  V   FK+M+D+D  +L LS+   RPE +IIT + VPP  +RPS+ +DG +  +E
Sbjct: 120 LFTPSEVYTTFKKMSDSDLHLLGLSDEYARPEWMIITVLPVPPPPVRPSIAVDGGAMRSE 179

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVAR 200
           +D+T +L  II+ +A++++   E   A       + LQ   A Y+++D+ G+P ++   R
Sbjct: 180 DDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQLLQFHXATYMDNDIAGIPQALAKIR 239

Query: 201 PL--SGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
               S  V+ LKGK+GR RGNL GKRV+++ RTVI+ DPNL++ EV +PI +A  LTYPE
Sbjct: 240 SSCESYPVRGLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPISVAMNLTYPE 299

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
           RV+  NI KL++ ++NGP++YPGAR +    G    L  ++  +    L+ G IV+RHL 
Sbjct: 300 RVTPFNIHKLQELVRNGPNEYPGARYVVRDTGERIDL--RYNKRTDAFLQHGWIVERHLR 357

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD VLFNRQPSLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMNMH+PQ+EE 
Sbjct: 358 DGDYVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEET 417

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
           R E   +  V   + +P+  + ++   QD L      T +DTF D      +  ++ D  
Sbjct: 418 RAELSQIAWVPLQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWD 477

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
             V  PTPAI+KP  LW+GKQ+ S++I    N+         +   SN +          
Sbjct: 478 GHV--PTPAIIKPKPLWSGKQILSMVIPRGINIH-----XAPDPKSSNPVF--------- 521

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                 +DG +   N E++ G + K T+G   + GL  V+ R+ G  AT      +  + 
Sbjct: 522 ------DDGML-IDNGEILFGIMDKKTVG-ATQGGLIHVVFREKGPDATRQVFTGIQIVV 573

Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+ ++GFSI I D +   K +S    K+  +  +V  +    Y++ +L+  PG    +
Sbjct: 574 NYWLYHNGFSIXIGDTIAGPKVMSFITDKIAEKKQKVSEIIDDAYHD-RLRAMPGMTIRE 632

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           + E ++   LNR R+++G+    +L   N+   M   GSKGS INISQM  CVGQQSV G
Sbjct: 633 SFENMVERELNRARDESGQYAQKNLKEDNNVKQMVTAGSKGSYINISQMSVCVGQQSVEG 692

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P A+GFV NS+  GL+  EFFFH MGG EGL+DTAVKTA
Sbjct: 693 KRIPFGFRHRTLPHFNKDDFSPEARGFVENSYLRGLTPQEFFFHAMGGXEGLIDTAVKTA 752

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           +TGY+ RRL+KALED+ + YD +VRN+ G ++QF+YG+DGMD A +E
Sbjct: 753 ETGYIQRRLVKALEDVMVHYDGTVRNSLGDLIQFIYGEDGMDGAFIE 799


>gi|324120522|dbj|BAJ78652.1| RNA polymerase II largest subunit [Mnais pruinosa pruinosa]
          Length = 1557

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 285/739 (38%), Positives = 429/739 (58%), Gaps = 35/739 (4%)

Query: 64  EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNI 120
           +  +   H  E      +A   L+   V  +FK +TD +C ++ +     RP+ +I+T +
Sbjct: 193 DLTAEWKHVNEDSQEKKIA---LSAERVWEIFKHITDEECFIMGMDPKYARPDWMIVTVL 249

Query: 121 AVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
            VPP+++RP+V+M GS  N++D+T +L  II++N  L +      +A       + LQ  
Sbjct: 250 PVPPLSVRPAVVMYGSARNQDDLTHKLSDIIKSNNELLRNEQAGAAAHVLSENIKMLQFH 309

Query: 181 VAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
           VA  +++D+ G+P +MQ + +PL     RLKGK+GR RGNL GKRV+++ RTVI+PDPNL
Sbjct: 310 VATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNL 369

Query: 240 KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF 299
           +I +V +P  +A+ LT+PE V+  NI+K+++ ++ G  +YPGA+ I   +G  R+     
Sbjct: 370 RIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNG-ERIDLRFH 428

Query: 300 RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
                + L+ G  V+RH+ DGD+V+FNRQP+LH+MS+M HR +++PW T R N SV +PY
Sbjct: 429 PKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPY 488

Query: 360 NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
           NADFDGDEMN+HVPQ+ E R E   +      + TP+  + ++   QD LT+   +T++D
Sbjct: 489 NADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRD 548

Query: 420 TFYDRAAFS--LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNL 477
            F ++      LM   + DG     +P PAILKP  LWTGKQ+FS++I  + NM      
Sbjct: 549 VFLEKEQMMNILMHLPIWDG----KMPQPAILKPKPLWTGKQVFSLIIPGNVNMI----- 599

Query: 478 TVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
               +T+S      + +++     + P D  V   + EL+ G L K TLG  +   L  +
Sbjct: 600 ----RTHST---HPDDEDDGPYCWISPGDTKVMVEHGELVMGILCKKTLGT-SAGSLLHI 651

Query: 538 LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNV 597
            + + G          +  +   W+   G SIGI D     +   +  K I +  E    
Sbjct: 652 CMLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIE 711

Query: 598 KIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSK 657
            I++ +  +L+  PG    QT E  +  ILN  R+  G +   SL   N+   M   GSK
Sbjct: 712 VIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSK 771

Query: 658 GSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATE 717
           GS INISQ++ACVGQQ+V G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ +E
Sbjct: 772 GSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 831

Query: 718 FFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDG 777
           FFFH MGGREGL+DTAVKTA+TGY+ RRLIKA+E + + YD +VRN+ G ++Q  YG+DG
Sbjct: 832 FFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDG 891

Query: 778 MDPANMEGKSGEPLNFDRL 796
           +         GE + F  L
Sbjct: 892 L--------CGETVEFQNL 902



 Score =  177 bits (450), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 133/421 (31%), Positives = 204/421 (48%), Gaps = 59/421 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R++  + + G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1057 LSSEAFEWLIGEIETRFQQAQCQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1116

Query: 941  GVPRIKEIINGAKRISTPIITAEL---ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            GVPR+KEIIN +K+   P +T  L      D E A  V+  R+E T L +V  +  I   
Sbjct: 1117 GVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL-CRLEHTTLRKVTANTAIYYD 1175

Query: 998  SRLASIVIA----------------------------LDMETIQDAHL------------ 1017
                + VI                             LD + + D  L            
Sbjct: 1176 PDPQNTVIGEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINTG 1235

Query: 1018 ------CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NV 1070
                  CI  D   E +V   +I++             +    VDK +    L  ++ N+
Sbjct: 1236 FGDDLNCIFNDDNAERLVL--RIRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANM 1293

Query: 1071 LPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGI 1124
            L  + ++GI+ + +V +   + + +K   V E+GE K   ++ L  +GT L  V+    +
Sbjct: 1294 LSDMTLQGIEAISKVYMHLPQTDSKKRIVVTESGEFKAIAEWLLETDGTSLMRVLSERDV 1353

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
            D  +T SN I E+   LGIEA R  +  E+N  ++ +G+ ++ RH+ LL D+MT +G ++
Sbjct: 1354 DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1413

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
             ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    LGTG   
Sbjct: 1414 AITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFD 1473

Query: 1245 I 1245
            +
Sbjct: 1474 L 1474


>gi|84490160|ref|YP_448392.1| DNA-directed RNA polymerase subunit A' [Methanosphaera stadtmanae
           DSM 3091]
 gi|84373479|gb|ABC57749.1| RpoA1 [Methanosphaera stadtmanae DSM 3091]
          Length = 873

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 270/694 (38%), Positives = 409/694 (58%), Gaps = 30/694 (4%)

Query: 111 RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
           RPE +++T + VPP+ +RPS+ ++  + +E+D+T +L  I++ N  L++ +         
Sbjct: 199 RPEWMVLTVLPVPPVTVRPSITLETGERSEDDLTHKLVDILRINQRLKENMEAGAPQLIV 258

Query: 171 LAGWETLQVEVAQYINSDVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
              WE LQ  V  Y +++  GVP +  +  RPL    QRLKGK+GRFR NL+GKRV ++ 
Sbjct: 259 EDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLAGKRVNFSA 318

Query: 230 RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
           RTVISPDP L I EV +P  +A+ +T P  V++ N+EK+++ I NGPD +PGA  I  PD
Sbjct: 319 RTVISPDPTLSINEVGVPEMIAKEVTVPIAVTEWNMEKMKEYINNGPDVHPGANYIIRPD 378

Query: 290 GTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 349
           G    +Y + +  +   LK G IV+RH+ DGD+VLFNRQPSLHRMS+M H  R++P++T 
Sbjct: 379 GRKIRVYDETKEMVVENLKPGYIVERHIIDGDIVLFNRQPSLHRMSMMAHEVRVLPYKTF 438

Query: 350 RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFL 409
           R N  VC PYNADFDGDEMNMHV QT EAR EA  +M VQ ++ +P+ G  ++ +  D +
Sbjct: 439 RLNLCVCPPYNADFDGDEMNMHVFQTPEARAEANDIMKVQEHILSPRYGGPIIGAIHDHI 498

Query: 410 TSSFLITRKDTFY-DRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
           T ++L+T   T Y +  AF ++         +++LP          WTGK++FS+L+   
Sbjct: 499 TGAYLLTHASTVYPEDKAFQII------KRSKMELPESKGRD----WTGKEIFSLLLPDK 548

Query: 469 ANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGN 528
            N+            Y  ++ R    EE + E  C +D +V   N +L+ G +     G+
Sbjct: 549 LNL-----------IYKAEICRK--CEECKHEN-CEHDAYVVISNGQLLQGVVDDKGYGS 594

Query: 529 GNKDGLYSVLLRDYGAHATSGCMNRLAKLSA-RWIGNHGFSIGIDDVQPKKELSDKKGKL 587
           G+   L S+ ++ +G       ++   KL+    +   GF+ G  D +  KE  ++  +L
Sbjct: 595 GSGKILDSI-VKQFGPSEARYFLDHATKLAVFGGVMQRGFTTGTADEEIPKEAEERIKEL 653

Query: 588 ISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNS 647
           + ++       I+ Y + +L+  PG    +TLE  I  +L   R++ G          NS
Sbjct: 654 LEKSDRKVEQLIQAYEDNELEALPGRSLRETLEMKIMQVLGEARDNTGVIAERYFTTSNS 713

Query: 648 PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVAN 707
            +IM+  G++GS +N++Q+  CVGQQ+V G R   G+I+R+LPHF +      A GFV +
Sbjct: 714 AVIMALTGARGSMLNLTQIATCVGQQAVRGGRINRGYINRTLPHFRKGDVGSKASGFVHS 773

Query: 708 SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
           S+  GL   EFFFH MGGREGLVDTA++TA +GYM RRL+ AL DLS+  D +VR+  G 
Sbjct: 774 SYKKGLDPLEFFFHAMGGREGLVDTAIRTAQSGYMQRRLVNALHDLSVHEDGTVRDNRGA 833

Query: 768 IVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVK 801
           I+QF YG+DG++PA  +   G   N DRL+ +++
Sbjct: 834 IIQFKYGEDGINPAKSD--YGIVANLDRLIEEMR 865


>gi|91095991|gb|AAW56763.2| RNA polymerase II largest subunit [Hygrophoropsis aurantiaca]
          Length = 991

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 298/755 (39%), Positives = 437/755 (57%), Gaps = 44/755 (5%)

Query: 35  CGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFL 94
           CG+I   ++K    L + + R K  +             E   ++     +  P  V   
Sbjct: 81  CGHIQPQIRKEGLKLFVQYKRPKDED-------------EDVKSLQPDKRLFTPSEVYTT 127

Query: 95  FKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRI 150
           FK+M+D+D  ++ LS+   RPE +I+T + VPP  +RPS+ +DG +  +E+D+T +L  I
Sbjct: 128 FKKMSDSDLHLIGLSDEYARPEWMILTVMPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDI 187

Query: 151 IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRL 209
           I+ + ++++   E   A       + LQ  VA Y+++D+ G+P ++Q + RP+     RL
Sbjct: 188 IKASVNVRRCEQEGAPAHVITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARL 247

Query: 210 KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
           KGK+GR RGNL GKRV+++ RTVI+ DPNL++ EV +P  +A  LTYPERV+ +NI  L+
Sbjct: 248 KGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDEVGVPRSIAMNLTYPERVTPYNIAYLQ 307

Query: 270 QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQP 329
           + ++NGP  YPGAR +    G    L  ++  +    L+ G IV+RHL+DGD VLFNRQP
Sbjct: 308 ELVRNGPTAYPGARYVVRDTGERIDL--RYNKRADAFLQYGWIVERHLKDGDFVLFNRQP 365

Query: 330 SLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQ 389
           SLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMNMH+PQ+EE R E   +  V 
Sbjct: 366 SLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVP 425

Query: 390 NNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAIL 449
             + +P   + ++   QD L      T +DTF D      +  ++ D    V  PTPAI+
Sbjct: 426 RQIISPHANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGAV--PTPAII 483

Query: 450 KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFV 509
           KP  LWTGKQ+ S++I    N+         +   SN +     D+ + IE         
Sbjct: 484 KPKPLWTGKQILSLVIPRGINIH-----RAPDPKSSNPVF----DDGMMIE--------- 525

Query: 510 YFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSI 569
              N E++ G + K T+G  ++ GL  V+ R+ G  AT      +  +   W+ ++GFSI
Sbjct: 526 ---NGEIVFGIVEKKTVG-ASQGGLIHVVFREKGPEATRDLFTGIQMVVNFWLFHNGFSI 581

Query: 570 GIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNR 629
           GI D      +     + I++  +     I++    +L+  PG    ++ E+ +   LNR
Sbjct: 582 GIGDAIAGPNVMSFITQEINDRKQQVTTIIEDAYHDRLKAMPGMTIRESFESKVERELNR 641

Query: 630 IREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSL 689
            R+ +G+    +L   N+   M   GSKGS INISQM  CVGQQSV GRR P GF  R+L
Sbjct: 642 ARDTSGRYAQENLKEDNNVKQMVVAGSKGSYINISQMSVCVGQQSVEGRRIPFGFRHRTL 701

Query: 690 PHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKA 749
           PHF +    P A+GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+TGY+ RRL+KA
Sbjct: 702 PHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKA 761

Query: 750 LEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           LED+ + YD +VRN+ G ++QF+ G+DGMD A +E
Sbjct: 762 LEDVMVCYDGTVRNSLGDLLQFVCGEDGMDGAFIE 796


>gi|431894008|gb|ELK03814.1| DNA-directed RNA polymerase II subunit RPB1 [Pteropus alecto]
          Length = 1975

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 293/739 (39%), Positives = 433/739 (58%), Gaps = 44/739 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +  R   PE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSG---C--IVD 314
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G   C  +V+
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKACNKLVE 452

Query: 315 RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
           RH+ DGD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN+H+PQ
Sbjct: 453 RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQ 512

Query: 375 TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM 434
           + E R E   L  V   + TP++   ++   QD LT+    T++D F +R     +  ++
Sbjct: 513 SLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFL 572

Query: 435 GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEG 493
                +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K I    
Sbjct: 573 STWDGKV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI---- 626

Query: 494 DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNR 553
                     P D  V   N ELI G L K +LG  +   L  +   + G   T    + 
Sbjct: 627 ---------SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSN 676

Query: 554 LAKLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
           +  +   W+   G +IGI D +   K   D +  +     +V  V  K +N  +L+  PG
Sbjct: 677 IQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPG 735

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
               QT E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++A VGQ
Sbjct: 736 NTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQ 795

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           Q+V G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGREGL+DT
Sbjct: 796 QNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDT 855

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLN 792
           AVKTA+TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +GE + 
Sbjct: 856 AVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVE 907

Query: 793 FDRLLMKVKATCPPAGQRY 811
           F  L     AT  P+ + +
Sbjct: 908 FQNL-----ATLKPSNKAF 921



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1079 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1138

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
              TP +T  L      +A R   +  R+E T L +V  +  I       S V        
Sbjct: 1139 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1198

Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
                                + LD + + D  L                  CI  D   E
Sbjct: 1199 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1258

Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
             +V   +I        Q+  +V+D    ++F    +S          N+L  + ++GI+ 
Sbjct: 1259 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1308

Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
            + +V +   + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I 
Sbjct: 1309 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1368

Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
            E+   LGIEA R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1369 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1428

Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
               LM  SFE+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1429 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1478


>gi|324120588|dbj|BAJ78685.1| RNA polymerase II largest subunit [Stenopsyche marmorata]
          Length = 1754

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 296/777 (38%), Positives = 449/777 (57%), Gaps = 35/777 (4%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           V  + K +TD +C +L +     RP+ +IIT + VPP+ +RP+V+M G+  N++D+T +L
Sbjct: 214 VWEILKHITDEECFILGMDPKFARPDWMIITVMPVPPLCVRPAVVMFGAAKNQDDLTHKL 273

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+TN  L +      +A       + LQ  VA ++++D+ G+P ++Q + +PL    
Sbjct: 274 SDIIKTNNELIRNEQAGAAAHVIQENIKMLQFHVATFVDNDMPGMPRAVQKSGKPLKAVK 333

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ LT+PE V+  NI+
Sbjct: 334 ARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 393

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLEDGDVVLF 325
           ++++ ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RHL D D+V+F
Sbjct: 394 RMQKLVRRGNSQYPGAKYIVRDNGERIDL--RFHPKPSDLHLQCGYKVERHLRDDDLVIF 451

Query: 326 NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
           NRQP+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R E   +
Sbjct: 452 NRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENI 511

Query: 386 MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPT 445
                 + TP+  + ++   QD LT+   +T++D F ++     +  ++   + +  +P 
Sbjct: 512 HITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPTWIGK--MPK 569

Query: 446 PAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR--IETMC 503
           P ILKP  LWTGKQ+FS++I  + NM          +T+S     T  DEE     + + 
Sbjct: 570 PCILKPKPLWTGKQIFSLIIPGNVNMI---------RTHS-----THPDEEDDGPYKWIS 615

Query: 504 PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSG-CMNRLAKLSARWI 562
           P D  V   + ELI G L K TLG      L+  +L     H T+G     +  +   W+
Sbjct: 616 PGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLE--LGHDTAGRFYGNIQTVVNNWL 673

Query: 563 GNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAV 622
              G SIGI D     +   +  K I +  E     I++ +  +L+  PG    QT E  
Sbjct: 674 LLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQ 733

Query: 623 ITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPN 682
           +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P 
Sbjct: 734 VNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPF 793

Query: 683 GFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYM 742
           GF  R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKTA+TGY+
Sbjct: 794 GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYI 853

Query: 743 SRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA 802
            RRLIKA+E + + YD +VRN+ G ++Q  YG+DG+    +E ++   +       + K 
Sbjct: 854 QRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKF 913

Query: 803 TCPPAGQRYL----SPQQVSEIVEKQLAAYGKESCSEAFL---NSLRKFFEGQQDKL 852
              P+ +RYL    S Q + E+ E        ES  E       +LR+ F G + K+
Sbjct: 914 KFDPSNERYLRRIFSEQVIKELTESGYVIADLESEWEQLCKDREALRQIFPGGESKV 970



 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/420 (31%), Positives = 206/420 (49%), Gaps = 60/420 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R++  +   G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1053 LSTEAFEWLIGEIETRFQQAQCNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1112

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENA--ARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN +K+   P +T  L      +A  A+ V  R+E T L +V  +  I    
Sbjct: 1113 GVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 1172

Query: 999  RLASIVIA----------------------------LDMETIQDAHL------------- 1017
               + VIA                            LD + + D  L             
Sbjct: 1173 DPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGF 1232

Query: 1018 -----CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NVL 1071
                 CI  D   E +V   +I +     K  D  +      VDK +    L  ++ N+L
Sbjct: 1233 GDDLNCIFNDDNAEKLVLRIRI-MNSDENKFQDNEEET----VDKMEDDMFLRCIEANML 1287

Query: 1072 PMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGID 1125
              + ++GI+ + +V +   + + +K   + ++GE K   ++ L  +GT +  V+    +D
Sbjct: 1288 SDMTLQGIEAIGKVYMHLPQTDSKKRIVITDSGEFKAIAEWLLETDGTSMMKVLSERDVD 1347

Query: 1126 GCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLG 1185
              +T SN I E+ Q LGIEA R  +  E+N  ++ +G+ ++ RH+ LL D+MT +G ++ 
Sbjct: 1348 PVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMA 1407

Query: 1186 ITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    +GTG   +
Sbjct: 1408 ITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDL 1467


>gi|418204404|gb|AFX61756.1| RNA polymerase I largest subunit, partial [Ascosphaera variegata]
          Length = 1683

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 294/711 (41%), Positives = 419/711 (58%), Gaps = 31/711 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSN-- 139
           ++ P     +FK ++  D  +L LS    RPE +IIT + VPP  +RPSV++ GS +N  
Sbjct: 193 VITPKEAREVFKNISSGDVRLLGLSNEYARPEWMIITVLPVPPPPVRPSVLVGGSGTNQR 252

Query: 140 -ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQ 197
            E+D+T +L  I++ N ++ +   + +     L  +E L Q  VA Y+++D+ G P +MQ
Sbjct: 253 GEDDLTYKLAEIVRANQNVAR--CQVDGVGHGLQEFEALLQYHVATYMDNDIAGQPKAMQ 310

Query: 198 VA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTY 256
            + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +P+ +AR LTY
Sbjct: 311 KSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIARTLTY 370

Query: 257 PERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
            E V+ +NI KL Q + NGP+ +PGA+ I  P G    L G         L+ G  V+RH
Sbjct: 371 TEVVTPYNISKLVQMVNNGPNIHPGAKYIIRPTGEKLNLVGNKTPNPGRLLQYGFKVERH 430

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           + DGDV+LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMN+HVPQ+E
Sbjct: 431 ILDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSE 490

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           E+R E   L  V  N+ +P+    L+   QD L   + I R+DTF  +     +  ++ D
Sbjct: 491 ESRAELKELALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKEHVMNIMMWVPD 550

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
             D V +P PAI+KP   WTGKQ+ S+++    N                 L+R + D  
Sbjct: 551 -WDGV-IPQPAIIKPRPRWTGKQIISMVLPSGLN-----------------LLRLDKDGA 591

Query: 497 IRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
              E   P ND   +    EL+ GQ  K T+G     G+   +  +YG        N   
Sbjct: 592 PLAERFSPINDSGCFIHGGELMFGQFSKKTVG-ATGGGVIHTIFNEYGPDVCMSFFNGTQ 650

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           ++   W+ ++GFSIGI D  P  +   K  + + E  +       +     L   PG + 
Sbjct: 651 RVVNYWLLHNGFSIGIGDTIPDAKTVAKIEEAVRERKDEVEDITDDATRDALDPLPGMNI 710

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            +T E+ ++  LN  R+DAG     SL   N  + M++ GSKGS INISQM+A VGQQSV
Sbjct: 711 RETFESKVSRALNNARDDAGNVTEKSLKDCNHGVQMARSGSKGSTINISQMMAIVGQQSV 770

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAVK
Sbjct: 771 EGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 830

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           TA+TGY+ R+L+KALE++ ++YD +VRN+ G +VQF+YG+DG+D A++E +
Sbjct: 831 TAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVVQFIYGEDGLDGAHIENQ 881



 Score =  196 bits (499), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 129/402 (32%), Positives = 200/402 (49%), Gaps = 53/402 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+       G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1051 NRFARAIASPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKN 1110

Query: 955  ISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T     E   N++A +V++ ++E T L  VA+ I+I     + + VI  D + +
Sbjct: 1111 IKTPSMTVYQVPELAGNQDAVKVLRSKVEHTTLRSVAEMIEIYYDPDIRNTVIEADKDMV 1170

Query: 1013 QDAHLCINADIVKESIVQTPK-IKLKQQHIKVLDFRKLEIFPPVDKSKIHFE-----LYS 1066
            +  +  I  D+ ++   Q+   ++L   HIK++D + L +    D+ K  FE     ++S
Sbjct: 1171 E-TYFIIPEDVQEKPEEQSQWLVRLVLSHIKLID-KGLTVQDVADRIKALFENDVNVMFS 1228

Query: 1067 LKN------------------------------------VLPMVIVKGIKTVERVVIAEK 1090
              N                                    +L    ++G+  VER  I EK
Sbjct: 1229 DDNSDQPVIRIRPLKGALDDDEEGDGNEMDHTLKIFQAHMLDHCTLRGVSGVERAFINEK 1288

Query: 1091 EKEK-------RKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGI 1143
               +        K  E+   K++ L   G+ L  V+  +G+D  +T SN   E+ +  GI
Sbjct: 1289 THARIMPDGSLSKSAEDDNCKEWILETSGSALADVLAIDGVDATRTYSNQFIEILEVFGI 1348

Query: 1144 EAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1203
            EA R  ++ E+ + +   G  ++ RH+ LL D+MT RG ++ +TR GI + D   LM  S
Sbjct: 1349 EATRTALLRELTQVLAFDGSYVNHRHLALLVDIMTSRGFLMAVTRHGINRSDTGALMRCS 1408

Query: 1204 FEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            FE+T + L  A+     D   GVSE +I+G   P GTG   +
Sbjct: 1409 FEETVEILLEAAAFAELDDCRGVSENLILGQMAPAGTGEFDV 1450


>gi|120561221|gb|ABM26996.1| RNA polymerase II largest subunit, partial [Funneliformis mosseae]
          Length = 1054

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 284/716 (39%), Positives = 428/716 (59%), Gaps = 33/716 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  V  +FK+++  D   L L+E   RP+ +IIT + VPP  +RPS+ MDG+   E+
Sbjct: 152 VLTPAQVYIIFKKISSEDLIDLGLNEEYARPDWMIITCLPVPPPPVRPSIQMDGTSRGED 211

Query: 142 DITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  I++ N +L++   + + A     F+SL     LQ   A Y+++++ G P ++
Sbjct: 212 DLTHKLADILKANQNLRRYESDGSPAHVVSEFESL-----LQFHCATYMDNEMAGQPQAL 266

Query: 197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q + RPL     RLKGK+GR RGNL GKRV+++ RTVI+ DPN+ + EV +P  +A  LT
Sbjct: 267 QKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLT 326

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
           +PE V+  N++ L++ ++NGP  +PGA+ +   D   R+          V L++G  V+R
Sbjct: 327 FPEIVTPFNVDLLQELVKNGPTVHPGAKYV-IRDTGERIDLKHTSGTNVVRLQNGWKVER 385

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           H+ +GDV++FNRQPSLH+MS+M H+ R+MP+ T R N SV +PYNADFDGDEMNMHVPQ+
Sbjct: 386 HINNGDVIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHVPQS 445

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
            E + E   +  V   + +P++ + ++   QD L +    T++D F  +     +  ++ 
Sbjct: 446 VETKAEIKEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFLSKDLVMNILMWVK 505

Query: 436 DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
           D   ++  P P ILKP+ LWTGKQ+ S++I    N     +  ++  T+       +G+ 
Sbjct: 506 DWDGKI--PIPCILKPIPLWTGKQILSMIIPKGIN-----SXNLRHSTHP------DGEN 552

Query: 496 EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
                 M P D  V   + EL+ G + K T+G   + GL  V++++ G +     +N   
Sbjct: 553 T----DMSPGDTKVLIEDGELLCGIVCKKTVGTAQQ-GLIHVIMQELGPNRAKDFLNGCQ 607

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
            +   W+  +GFSIGI D    K+  D   + I+   E     I    + KL+ +PG   
Sbjct: 608 AVVNYWLLQNGFSIGIGDTIADKDTMDSITQTINNAKERVKEVILSAQQNKLECQPGMTI 667

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            ++ E  +   LN  R+ AG++   SL   N+   M   GSKGS INISQM ACVGQQ+V
Sbjct: 668 RESFENQVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGSKGSFINISQMTACVGQQNV 727

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R P GF  R+LPHF +    P ++GFV NS+  GL+  EFFFH MGGREGL+DTAVK
Sbjct: 728 EGKRIPYGFKFRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 787

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL 791
           TA+TGY+ RRL+KALED+ ++YD +VRN+ G I+QF YG+DGMD   +E ++ + L
Sbjct: 788 TAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGEDGMDACYVESQNIDSL 843


>gi|113957514|gb|ABI49120.1| RNA polymerase II largest subunit [Anaptychia palmatula]
          Length = 1020

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 291/706 (41%), Positives = 422/706 (59%), Gaps = 36/706 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQ--SNE 140
           + P   L +F +M+  D + + +S    RPE +IIT + VPP  +RPS+ +D     + E
Sbjct: 140 ITPAMALAIFLQMSPEDIKTMGMSNDYARPEWMIITVLPVPPPPVRPSIKVDSGDGPTGE 199

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA 199
           +D+T +L  II+ N ++++   E   A   +  +ETL Q  VA Y+++D  G P ++Q +
Sbjct: 200 DDLTYKLGDIIRANGNVRRGETEGTPA-HIIEEFETLLQFHVATYMSNDTAGQPQALQKS 258

Query: 200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYPE
Sbjct: 259 GRPVKAIRARLKGKEGRVRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPE 318

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            V+ +NI+KL Q I+NGP+++PGAR +   +G  R+     R    + L+ G  V+RH+ 
Sbjct: 319 TVTPYNIQKLHQLIKNGPNEHPGARYVIRDNG-ERIDLRYHRRAGDLVLQYGWKVERHIV 377

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE 
Sbjct: 378 DGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 437

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
           R E   L  V  N+ +P+    L+   QD L   + I R+D F ++     +  ++ D  
Sbjct: 438 RAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLNQGQVMNILLWVPD-W 496

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           D + +P PAILKP  +WTGKQ+ S++I    N+       V++K + N L          
Sbjct: 497 DGI-IPQPAILKPTPVWTGKQIVSLIIPAGLNL-------VRDKNH-NPL---------- 537

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                 +D        EL+ G L K  +G     G+  ++  + G  A     N    + 
Sbjct: 538 ------DDKGALISGGELMYGLLTKRIVG-AQMAGVIHIVYNEKGPEAAMNFFNGAQAVV 590

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
             W+ ++GFSIGI D  P +E      + +++  +   V  KE     L+  PG +  +T
Sbjct: 591 NYWLLHNGFSIGIGDTIPDRETIRLIEEAVTKKKDEVAVITKEATNSTLETLPGMNIRET 650

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            E+ ++  LN  R++AG     SL   N+   M++ GSKGS INISQM A VGQQSV G+
Sbjct: 651 FESKVSKALNSARDNAGTVTEDSLKDLNNATQMARSGSKGSSINISQMTAVVGQQSVEGK 710

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R P GF  R+LPHF +    P ++GFV NS+  GL+ T FFFH M GREGL+DTAVKTA+
Sbjct: 711 RIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTGFFFHAMAGREGLIDTAVKTAE 770

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           TGY+ RRL+KALED+  +YD ++RN+ G IVQF+YG+DG+D A++E
Sbjct: 771 TGYIQRRLVKALEDVMAKYDGTIRNSLGDIVQFVYGEDGLDGAHIE 816


>gi|452844541|gb|EME46475.1| hypothetical protein DOTSEDRAFT_70470 [Dothistroma septosporum
           NZE10]
          Length = 1773

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 278/702 (39%), Positives = 418/702 (59%), Gaps = 33/702 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQS---N 139
           + P   L +F+ +++ D   L L+    RPE +++T + VPP A+RPS+ +DG+     +
Sbjct: 212 ITPQMALNIFRNISEEDLARLGLNVDYARPEWMVLTVLPVPPPAVRPSISVDGTSQGMRS 271

Query: 140 ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-V 198
           E+D+T +L  II+ N+++++   E +           LQ  VA Y+++D+ G+P + Q  
Sbjct: 272 EDDLTYKLSDIIRANSNVRRCEQEGSPQHILEEFTTLLQYHVATYMDNDIAGLPRAQQKT 331

Query: 199 ARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RPL     RLK K+GR RGNL GKRV+++ RTVI+ DPNL + +V +P  +AR+LT+PE
Sbjct: 332 GRPLKAIRARLKSKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSIARVLTFPE 391

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
           RV+ +N  KL + ++NGP ++PGA+ I   DG+ R+     +    + L  G IV+RH+ 
Sbjct: 392 RVTPYNKHKLTELVRNGPLEHPGAKFIIRDDGS-RIDLRYHKRAGEINLMVGWIVERHVV 450

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           D D ++FNRQPSLH+ S+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+ E 
Sbjct: 451 DNDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSHET 510

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
           R E   L  V +N+ +P+    L+   QD +   +++TR+D F D      +  ++  G 
Sbjct: 511 RAEVANLCAVPHNIVSPQKNGPLMGIVQDTMAGIYMMTRRDVFLDYEQVMNILLWV-PGW 569

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
           D V +P PAI+KP+  WTGKQ+        A++ +   L +      +  +R E D    
Sbjct: 570 DGV-VPPPAIIKPLPRWTGKQI--------ASLALPAGLNILRPKKDHMPLREEKD---- 616

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                  DG V  +N E+I G++ K  +G  +  G+   +  D G  A     N   ++ 
Sbjct: 617 -------DGLV-IQNGEIIWGRMVKGIVG-ASGGGVVHCIFNDRGPDAAVEFFNAAQRIV 667

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+ ++GFS+GI D  P   +  K + ++IS+   V   +  E    +L+  PG    +
Sbjct: 668 CYWLLHNGFSVGIGDTIPDDFMVGKIEDEIISQKEAVQGFET-EVQANELEPAPGMTIRE 726

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E+     L+  R  +G      +   N+  IM + GSKGS  N+SQM A VGQQS+ G
Sbjct: 727 TFESKTKAALDNARNKSGDVAYKHMNACNNVGIMVKSGSKGSTTNVSQMTAAVGQQSLEG 786

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R LPHFP+    PA++GFV NS+  GL+  EFFFH MGGREGL+DTAVKTA
Sbjct: 787 KRLPFGFKYRVLPHFPKDDYSPASRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTA 846

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
           +TGY+ RRL+KALE++ I+YD++VRN+ G I+QF YG+DG+D
Sbjct: 847 ETGYIQRRLVKALEEVMIKYDSTVRNSLGDILQFAYGEDGLD 888



 Score =  169 bits (427), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 194/395 (49%), Gaps = 49/395 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFH AGV +   T+GVPR+KEI+N A+ 
Sbjct: 1068 NRFLRALVSPGEMVGVLAAQSIGEPATQMTLNTFHLAGVTAKTTTKGVPRLKEILNVAEN 1127

Query: 955  ISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +      E    + +A+ ++  +E T L  V    +I     + S VI +D + +
Sbjct: 1128 IKTPNMKVYQLPETAQFQESAKQLRSMVEFTSLRGVTDETEIYYDPDVQSTVIDVDKDMV 1187

Query: 1013 QDAHLCI-----NADIVKESIVQTP--KIKLKQQHIKVLDF--RKLEIFPP--------- 1054
            + AH  I     N D   + +++    + KL  + + V +   R  E+F           
Sbjct: 1188 E-AHFIIPDDDENPDAQGKWLLRITLGRAKLLDKGLTVTNVANRIKEMFGKDVAVIFADD 1246

Query: 1055 -VDKSKIHFEL----------------YSLK----NVLPMVIVKGIKTVERVVIA----- 1088
              D+  I   +                 +LK    ++L  V+++G+  V R  ++     
Sbjct: 1247 NADECVIRVRMNTGGQNKDEEDAEEEEDTLKRLEAHMLDTVVLRGVSGVRRAFVSKDARL 1306

Query: 1089 -EKEKEKRKVKENGEK-KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAA 1146
             E      K     EK +++ L  +G  L+ ++  EG+D  +T  NH   + +  GIEA 
Sbjct: 1307 YEAPDGALKFSTQEEKCQEWLLDTDGVNLKDILAVEGVDPTRTTCNHFQSIMKVFGIEAV 1366

Query: 1147 RICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEK 1206
            R  ++ E+ + +   G  ++ RHM +L D+M  RGE++ +TR GI + D   LM  SFE+
Sbjct: 1367 RASLMREMKDVLTNDGSYVNHRHMAILCDVMCARGELMAVTRHGINRSDTGALMRCSFEE 1426

Query: 1207 TADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
            T + LF+A+ +G  D   GVSE II+G   P GTG
Sbjct: 1427 TVEILFDAASSGELDDCRGVSENIILGQLAPSGTG 1461


>gi|209880239|ref|XP_002141559.1| DNA-directed RNA polymerase II subunit RPB1 [Cryptosporidium muris
           RN66]
 gi|209557165|gb|EEA07210.1| DNA-directed RNA polymerase II subunit RPB1, putative
           [Cryptosporidium muris RN66]
          Length = 1927

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 291/733 (39%), Positives = 430/733 (58%), Gaps = 29/733 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           VL +FKR+TD D ++L    +   P   + T + +PP A+RP V   GS  +E+D+T +L
Sbjct: 201 VLNIFKRITDEDMKLLGFDPKRCNPCWFVTTILPIPPPAVRPYVQF-GSDRSEDDLTLKL 259

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARPLSGFV 206
           ++I++ N +L++++   +           LQ  +   +N+D+ G+P S  +  RP+    
Sbjct: 260 QQIVKLNENLKRQIRLGSPDHILNEMIAVLQYHLVTLVNNDLPGLPQSRTRSNRPIKSLR 319

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK GR RGNL GKRV+++ RTVI+ DPNL + +V +P  +A  LTYPE V+ +NIE
Sbjct: 320 ARLKGKDGRIRGNLMGKRVDFSARTVITGDPNLSVDQVGVPYSIAMTLTYPEIVTPYNIE 379

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLY--GKFRNQLAVELKSGCIVDRHLEDGDVVL 324
           +L++ ++ GP ++PGA  I   DGT   L    +  N     L+ G  V+RH+++ D+VL
Sbjct: 380 ELKELVERGPYEWPGATSIVQDDGTKIDLRFCNRSNNNANCVLQYGWKVERHMKNDDLVL 439

Query: 325 FNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALL 384
           FNRQPSLH+MSIM HR +I+P+ T R N SV +PYNADFDGDEMN+H+ Q+ E R+E   
Sbjct: 440 FNRQPSLHKMSIMGHRVKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSYETRSEIKH 499

Query: 385 LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DRAAFSLMCCYMGDGMDRVD 442
           LM V   + +P+    ++   QD L   FL+TRK TF   DR    L+C    +G+    
Sbjct: 500 LMMVPKQIVSPQGNRPVIGIVQDSLLGLFLLTRKSTFLTKDRFLQLLLCIPYWNGI---- 555

Query: 443 LPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLT-------VKEKTYSNKLIRTEGDE 495
           +P PAIL+P  LWTGKQ+ +VL+    ++   + L        V  ++ +    ++E  +
Sbjct: 556 IPPPAILRPQPLWTGKQIITVLLTFTTDLGEPIELNLMRDGSIVNIRSSNTSGNKSENKD 615

Query: 496 EIRIETMCPN------DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSG 549
           E + ET+  N      D  V  +  E I G + K   G+ +   L  +L  + G   T  
Sbjct: 616 EAK-ETIINNPWISEYDNQVLIQQGEHICGIITKKIAGSSSG-SLIHILWNEIGPEKTGL 673

Query: 550 CMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQL 609
            +     +   W+  HGF++G  D+QP     +K    +  +       I+   +G+L  
Sbjct: 674 FLTYTQMVVNTWLLEHGFTVGCQDIQPLNFTLEKIMTSLENSKLHVQQIIRRAQKGQLDC 733

Query: 610 KPGCDAAQTLEAVITDILNRIREDAGKACMGSL-PWRNSPLIMSQCGSKGSPINISQMVA 668
           +PG    ++ EA +   LN  RE +G     +L P +N+ + M QCGSKGS INISQ++A
Sbjct: 734 QPGKSLVESFEAQVNQELNSAREMSGIIATENLDPSKNNMIAMVQCGSKGSTINISQIMA 793

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
           CVGQQ+V G+R P GF DRSLPHF +    P ++GFV+NS+ SGL+  E FFH MGGREG
Sbjct: 794 CVGQQNVEGKRIPFGFRDRSLPHFLKYDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREG 853

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSG 788
           ++DTA KT++TGY+ RRLIKA+ED  +QYD +VRN  G I+QFLYG+DGM    +E +  
Sbjct: 854 IIDTACKTSETGYIQRRLIKAMEDCMVQYDRTVRNCCGDIIQFLYGEDGMAGEFIEDQVI 913

Query: 789 EPLNFDRLLMKVK 801
           E L  D  + + K
Sbjct: 914 ELLQMDPSVFQHK 926



 Score =  172 bits (437), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 124/422 (29%), Positives = 189/422 (44%), Gaps = 71/422 (16%)

Query: 890  IQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII 949
            IQ  F R       +G  +G I AQSIGEP TQMTL TFHFAGV S N+T GVPR++E+I
Sbjct: 1101 IQHQFYR---SLAHSGEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELI 1157

Query: 950  NGAKRISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIA 1006
            N AK + TP +T  LE    ND E+A  V+   +E T L  +     I+   +    ++ 
Sbjct: 1158 NVAKNVRTPTLTIYLENSIANDQEHAKDVLT-LLEHTTLENITTMAHILYDPKFDETIVE 1216

Query: 1007 LD-------------------------------------------------METIQDAHL 1017
             D                                                 ME   D   
Sbjct: 1217 ADKQWVSDYYEFPDDVDIKSRLGTWLLRIQLNSKLVTDKKLSMKEIGDKILMEFSNDELD 1276

Query: 1018 CINADIVKESIVQTPKIK------------LKQQHIKVLDFRKLEIFPPVDKSKIHFELY 1065
            CI  D   + +V   +IK            +     ++ D       PPV +     E  
Sbjct: 1277 CIWTDDNSDELVLRLRIKNLEPTNSGTQDTVMNSEFQIDDGHYQPPTPPVVEEHKFLEKL 1336

Query: 1066 SLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENG--EKKKYRLLVEGTGLQAVMGAEG 1123
             +   L  + ++GI  +++V + E++  +  +         ++ L  +G  L+AV+  E 
Sbjct: 1337 -MTECLSQITLRGISNIKKVYMKEEQVTRYDILSQKIVRDNQWVLDTDGCNLEAVLCHEA 1395

Query: 1124 IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
            ID  +T SN I EV   LGIEA R  ++ E+   +   G  ++ RH+ LL D MT +G +
Sbjct: 1396 IDSTRTISNDITEVFSVLGIEAVRRALLKELRTVISFDGSYVNYRHLALLCDNMTQKGHL 1455

Query: 1184 LGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGIL 1243
            + ITR G+ ++D+  L   SFE+T + L +A++ G  D + GVSE +++G   P GT   
Sbjct: 1456 MSITRHGMNRVDRGPLQKCSFEETVEILMDAAMFGETDYLNGVSENVMVGQLSPYGTACF 1515

Query: 1244 KI 1245
             +
Sbjct: 1516 DL 1517


>gi|15679064|ref|NP_276181.1| DNA-directed RNA polymerase subunit A' [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|6685898|sp|O27125.1|RPOA1_METTH RecName: Full=DNA-directed RNA polymerase subunit A'
 gi|2622150|gb|AAB85542.1| DNA-dependent RNA polymerase, subunit A' [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 870

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 274/724 (37%), Positives = 424/724 (58%), Gaps = 33/724 (4%)

Query: 84  YILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNE 140
           Y L P  V    +R++D D  +L ++    RPE +++T + VPP+ +RPS+ ++  + +E
Sbjct: 169 YKLTPSEVRERLERISDDDALILGVNPEVARPEWMVLTVLPVPPVTVRPSITLETGERSE 228

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVA 199
           +D+T +L  I++ N  L++ +            WE LQ  V  Y +++  GVP +  +  
Sbjct: 229 DDLTHKLVDILRINQRLKENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSG 288

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RPL    QRLKGK+GRFR NLSGKRV ++ RTVISPDPN+ I EV +P  +AR +T P  
Sbjct: 289 RPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVISPDPNISINEVGVPEIIAREVTVPVY 348

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V++ NI+++R+ I+NGPD +PGA  +  PDG    +Y + +  +   LK G IV+RHL+D
Sbjct: 349 VTEWNIDRMREYIENGPDVHPGANYVIRPDGRKIRIYNETKEVVLENLKPGYIVERHLKD 408

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD+VLFNRQPSLHRMS+M H+ R++P++T R N  VC PYNADFDGDEMNMHV QTEE+R
Sbjct: 409 GDIVLFNRQPSLHRMSMMAHQVRVLPYKTFRLNLCVCPPYNADFDGDEMNMHVFQTEESR 468

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDT-FYDRAAFSLMCCYMGDGM 438
            EA  LM VQ ++ +P+ G  ++    D ++ ++L+TRK   F +   F +        +
Sbjct: 469 AEAKTLMRVQEHILSPRFGGPIIGGIHDHISGAYLLTRKSAVFSEEKVFQI--------L 520

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            +  LP P        WTGK++FS+++    NM            Y  ++ R     E  
Sbjct: 521 KKAGLPLPDSRG--RDWTGKEIFSMVLPDDLNM-----------VYRAEVCRK---CEEC 564

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
           +E  C ND +V   N +LISG + +   G      +   ++++YG  A    ++   KL+
Sbjct: 565 LEMECENDAYVVIENGQLISGVIDEKAYG-AFAGKILDHIVKEYGTDAAREFLDSATKLA 623

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
              I + GF+   +D +  +E  ++    +       +  I+ Y  G+L+  PG    +T
Sbjct: 624 IAGIMHAGFTTSTNDEEIPEEARERIEAHLRNAEARVDQLIEAYENGELEPLPGRSLEET 683

Query: 619 LEAVITDILNRIREDAGKACMGSLPW-RNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           LE  I  +L   R+ +G+          N  +IM+  G++GS +N++Q+ ACVGQQSV G
Sbjct: 684 LEMKIMQVLGEARDKSGEIAESYFDMDENHAVIMALTGARGSMLNLTQITACVGQQSVRG 743

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            R   G+ +R+LPHF +      ++GFV +S+  GL   EFFFH MGGREGLVDTA++TA
Sbjct: 744 GRISRGYDNRTLPHFKKGELGAKSRGFVHSSYKEGLDPIEFFFHAMGGREGLVDTAIRTA 803

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
            +GYM RRL+ AL+DL++  +  V +  G I+Q  +G+DG+DPA  +   G+ ++ D+L+
Sbjct: 804 QSGYMQRRLVNALQDLTVDENGRVVDNRGVIIQNRFGEDGVDPAKSD--YGKIVDLDKLV 861

Query: 798 MKVK 801
            +++
Sbjct: 862 EEIR 865


>gi|397135928|gb|AFO11459.1| RNA polymerase I, partial [Nadsonia fulvescens]
          Length = 872

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 290/711 (40%), Positives = 427/711 (60%), Gaps = 39/711 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+P ++L +FK +T  D   L L+E   RPE +IIT + VPP  +RPS+ ++ +   E+D
Sbjct: 15  LSPTDILNVFKHITPEDAARLGLNEDYARPEWMIITVLPVPPPPVRPSIAINDTARGEDD 74

Query: 143 ITERLKRIIQTNASL---QQELVEAN--SAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ 197
           +T +L  I++ N+++   +QE    +  + F++L     LQ  VA Y+++D+ G P ++Q
Sbjct: 75  LTYKLADILKANSNVDRCEQEGAPGHVINEFEAL-----LQYHVATYMDNDIAGQPQALQ 129

Query: 198 VA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTY 256
            + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL++ +V +P  +AR LTY
Sbjct: 130 KSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPRSIARTLTY 189

Query: 257 PERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
           PE V+ +NI +L + ++NGP+++PGA+ +   D   R+     +    + L+ G  V+RH
Sbjct: 190 PEIVTPYNIHRLTEYVRNGPNEHPGAKYV-IRDTGERIDLRYHKRAGDIALQYGWKVERH 248

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           L D D VLFNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+E
Sbjct: 249 LMDNDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 308

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           E R E   L  V   + +P++ + ++   QD L     +T +DTF D     +  C+   
Sbjct: 309 ETRAELSQLCMVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIDYEQV-MNICFWVP 367

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
           G D V +P PAILKP  LWTGKQ+ S+ I    +++ + +        SN +I       
Sbjct: 368 GWDGV-VPHPAILKPKPLWTGKQMASLCIPKGIHLQRFDD--------SNPII------- 411

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
                  P D  +Y  + ++I G + K T+G     GL   ++R+ G+         + K
Sbjct: 412 ------SPKDNGMYIVDGQIIYGVVDKKTIG-ATGGGLVHTIMREKGSQICCNFFGSIQK 464

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
               W+ ++GFSIGI D              I+E  +     I +     L  +PG    
Sbjct: 465 TVNFWLLHNGFSIGIGDTIADAGTMRDITNTIAEAKQKVQEIINDAQANTLSPEPGMTLR 524

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           ++ E  ++ +LN+ R+ AG++   SL   N+   M   GSKGS INISQM ACVGQQ V 
Sbjct: 525 ESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE 584

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF DR+LPHF +    P +KGF+ NS+  GL+  EFFFH M GREGL+DTAVKT
Sbjct: 585 GKRIPYGFSDRTLPHFTKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKT 644

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           A+TGY+ RRL+KALED+ +QYD + RN+ G I+QF+YG+DG+D A +E ++
Sbjct: 645 AETGYIQRRLVKALEDVMVQYDGTTRNSLGDIIQFVYGEDGIDGAQVEKQT 695


>gi|324120536|dbj|BAJ78659.1| RNA polymerase II largest subunit [Nomadacris japonica]
          Length = 1659

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 282/728 (38%), Positives = 424/728 (58%), Gaps = 24/728 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           V  + K +TD +C +L +     RP+ +I T + VPP+++RP+V+M GS  N++D+T +L
Sbjct: 215 VWEILKHITDEECFILGMDPKFARPDWMICTVLPVPPLSVRPAVVMYGSARNQDDLTHKL 274

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II++N  L +      +A       + LQ  VA  +++D+ G+P +MQ + +PL    
Sbjct: 275 ADIIKSNNELMRNEQAGAAAHVISENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIK 334

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ +T+PE V+  NI+
Sbjct: 335 ARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNID 394

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           K+++ ++ G  +YPGA+ I   +G  R+          + L+ G  V+RH+ DGD+V+FN
Sbjct: 395 KMQELVRRGNSQYPGAKYIVRDNG-ERIDLRFHPKSSDLHLQCGYKVERHVRDGDLVIFN 453

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQP+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R E   L 
Sbjct: 454 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENLH 513

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLP 444
                + TP+  + ++   QD LT+   +T++D F ++      LM   + DG     +P
Sbjct: 514 ITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDG----KMP 569

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
            PAILKP  LWTGKQLFS++I  + NM          +T+S      + +++   + + P
Sbjct: 570 QPAILKPKPLWTGKQLFSLIIPGNVNMI---------RTHST---HPDDEDDGPYKWISP 617

Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
            D  V   + EL+ G L K TLG  +   L  +   + G          +  +   W+  
Sbjct: 618 GDTKVMVEHGELVMGILCKKTLGT-SAGSLLHICFLELGHEVCGQFYGNIQTVVNNWLLL 676

Query: 565 HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
            G SIGI D     +   +  K I +  E     I + +  +L+  PG    QT E  + 
Sbjct: 677 EGHSIGIGDTIADPQTYTEIQKAIKKAKEDVIEVIHKAHNMELEPTPGNTLRQTFENQVN 736

Query: 625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
            ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P GF
Sbjct: 737 RILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGF 796

Query: 685 IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
             R+LPHF +    P ++GFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA+TGY+ R
Sbjct: 797 RKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 856

Query: 745 RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATC 804
           RLIKA+E + + YD +VRN+ G ++Q  YG+DG+    +E ++   +       + K   
Sbjct: 857 RLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKTFEKKFKF 916

Query: 805 PPAGQRYL 812
            P  +R+L
Sbjct: 917 DPTNERHL 924



 Score =  176 bits (447), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 133/421 (31%), Positives = 204/421 (48%), Gaps = 63/421 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R++  +   G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1054 LSTEAFEWLIGEIETRFQQAQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1113

Query: 941  GVPRIKEIINGAKRISTPIITAEL---ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            GVPR+KEIIN +K+   P +T  L      D E A  V+  R+E T L +V  +  I   
Sbjct: 1114 GVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL-CRLEHTTLRKVTANTAIYYD 1172

Query: 998  SRLASIVIA----------------------------LDMETIQDAHL------------ 1017
                + VIA                            LD + + D  L            
Sbjct: 1173 PDPQNTVIAEDQEFVNIYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAG 1232

Query: 1018 ------CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NV 1070
                  CI  D   E +V   +I    ++      +  E    VDK +    L  ++ N+
Sbjct: 1233 FGDDLNCIFNDDNAEKLVLRIRIMNSDEN------KFQEEGETVDKMEDDMFLRCIEANM 1286

Query: 1071 LPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGI 1124
            L  + ++GI+ + +V +   + + +K   + E GE K   ++ L  +GT +  V+    +
Sbjct: 1287 LSEMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDV 1346

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
            D  +T SN I E+   LGIEA R  +  E+N  ++ +G+ ++ RH+ LL D+MT +G ++
Sbjct: 1347 DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1406

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
             ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    LGTG   
Sbjct: 1407 AITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFD 1466

Query: 1245 I 1245
            +
Sbjct: 1467 L 1467


>gi|123979348|gb|ABM81499.1| RNA polymerase II largest subunit [Erioderma verruculosum]
          Length = 995

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 287/710 (40%), Positives = 419/710 (59%), Gaps = 38/710 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS--NE 140
           + P   L +F+ ++  + + + LS    RPE +IIT + VPP  +RPS+ +DG      E
Sbjct: 115 ITPQMALNIFRHISTEEIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGVRGE 174

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA- 199
           +D+T +L  II+ N ++++   E + A   +   + LQ  VA Y+++D+ G P ++Q + 
Sbjct: 175 DDLTYKLGDIIRANGNVRRCETEGSPAHVVMEFEQLLQFHVATYMDNDIAGQPQALQKSG 234

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYPE 
Sbjct: 235 RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPET 294

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI KL Q ++NGP+++PGA+ +    G  R+     +    + L+ G  V+RH+ D
Sbjct: 295 VTPYNIHKLHQLVKNGPNEHPGAKYVIRESG-ERIDLRHHKRAGEISLQYGWKVERHIVD 353

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDG EMN+HVPQ+EE R
Sbjct: 354 GDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGGEMNLHVPQSEETR 413

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DRAAFSLMCCYMGDG 437
            E   L  V  N+ +P+    L+   QD L   + I R+D F   ++A   L+     DG
Sbjct: 414 AEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQAMNILLWVPDWDG 473

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
           +    LP PAILKP   WTGKQ+ S++I P  N+   V+                     
Sbjct: 474 L----LPQPAILKPRPKWTGKQIISLVIPPGLNLNRPVS--------------------- 508

Query: 498 RIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
             E   P ND  +     +L+ G L K ++G  +  G+  ++  + G  A     N    
Sbjct: 509 --EGFSPVNDDGLLVSGGKLMYGLLSKKSVG-ASGSGIVHIIFNEKGPEAAMKFFNGAQT 565

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           +   W+ ++GFSIGI D  P +    +    +++  E      +   E +L+  PG +  
Sbjct: 566 VVNFWLLHNGFSIGIGDTIPDRNTIQQIEDAVNKQKEDVAEITRSATENELEPLPGMNVR 625

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           +T E+ ++  LN+ R+DAG     SL   N+   M++ GSKGS INISQM A VGQQSV 
Sbjct: 626 ETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVE 685

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREG +DTAVKT
Sbjct: 686 GKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGFIDTAVKT 745

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           A+TGY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D  ++E +
Sbjct: 746 AETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIESQ 795


>gi|418204400|gb|AFX61754.1| RNA polymerase I largest subunit, partial [Ascosphaera larvis]
          Length = 1627

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 294/711 (41%), Positives = 417/711 (58%), Gaps = 31/711 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSN-- 139
           ++ P     +FK ++  D  +L LS    RPE +IIT + VPP  +RPSV++ GS +N  
Sbjct: 193 VITPKEAREVFKNISSGDVRLLGLSNEYARPEWMIITVLPVPPPPVRPSVLVGGSGTNQR 252

Query: 140 -ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQ 197
            E+D+T +L  I++ N ++ +   + +     L  +E L Q  VA Y+++D+ G P +MQ
Sbjct: 253 GEDDLTYKLAEIVRANQNVAR--CQVDGVGHGLQEFEALLQYHVATYMDNDIAGQPKAMQ 310

Query: 198 VA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTY 256
            + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +P+ +AR LTY
Sbjct: 311 KSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIARTLTY 370

Query: 257 PERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
            E V+ +NI KL   + NGP+ +PGA+ I  P G    L G         L+ G  V+RH
Sbjct: 371 TEVVTPYNISKLVAMVNNGPNIHPGAKYIIRPTGEKLNLVGNKTPNPGRLLQYGFKVERH 430

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           + DGDV+LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMN+HVPQ+E
Sbjct: 431 ILDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSE 490

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           E+R E   L  V  N+ +P+    L+   QD L   + I R+DTF  +     +  ++ D
Sbjct: 491 ESRAELKELALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKEHVMNIMMWVPD 550

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
             D V +P PAI+KP   WTGKQ+ S+++    N                 L+R + D  
Sbjct: 551 -WDGV-IPQPAIIKPRPRWTGKQIISMVLPSGLN-----------------LLRLDKDGA 591

Query: 497 IRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
              E   P ND   +    EL+ GQ  K T+G     G+   +  +YG        N   
Sbjct: 592 PLAERFSPINDSGCFIHGGELMFGQFSKKTVG-ATGGGVIHTIFNEYGPDVCMSFFNGTQ 650

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           ++   W+ ++GFSIGI D  P      K  + + E  E       +     L   PG + 
Sbjct: 651 RVVNYWLLHNGFSIGIGDTIPDANTVAKIEEAVRERKEEVEDITDDATRDALDPLPGMNI 710

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            +T E+ ++  LN  R+DAG     SL   N  + M++ GSKGS INISQM+A VGQQSV
Sbjct: 711 RETFESKVSRALNNARDDAGNVTEKSLKDCNHGVQMARSGSKGSTINISQMMAIVGQQSV 770

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAVK
Sbjct: 771 EGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 830

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           TA+TGY+ R+L+KALE++ ++YD +VRN+ G +VQF+YG+DG+D A++E +
Sbjct: 831 TAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVVQFIYGEDGLDGAHIENQ 881



 Score =  196 bits (498), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 151/513 (29%), Positives = 240/513 (46%), Gaps = 76/513 (14%)

Query: 790  PLNFDRLLMKVKAT--CPPAGQRYLSPQ----QVSEIVEKQLAAYGKESCSEAFLNSLRK 843
            P+N  R+L   K T          L P     QV E++++ +   G +S S     S   
Sbjct: 957  PINVQRILETAKTTFRIREGTVSDLHPSEVIPQVRELLDRLVVVRGDDSISREAQESATL 1016

Query: 844  FFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVE 903
             F  Q   L  ++ F        +  ++E   +K +      L+  +    +R+      
Sbjct: 1017 LFMCQ---LRSRLAF--------RRLVVEYSLNKLA------LQHVLGAIENRFARAIAS 1059

Query: 904  AGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAE 963
             G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK I TP +T  
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKNIKTPSMTVY 1119

Query: 964  L--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINA 1021
               E   N++A +V++ ++E T L  VA+ I+I     + + VI  D + ++  +  I  
Sbjct: 1120 QVPELAGNQDAVKVLRSKVEHTTLRSVAEMIEIYYDPDIRNTVIEADKDMVE-TYFIIPE 1178

Query: 1022 DIVKESIVQTPK-IKLKQQHIKVLDFRKLEIFPPVDKSKIHFE-----LYSLKN------ 1069
            D+ ++   Q+   ++L   HIK++D + L +    D+ K  FE     ++S  N      
Sbjct: 1179 DVQEKPEEQSQWLVRLVLSHIKLID-KGLTVQDVADRIKALFENDVNVMFSDDNSDQPVI 1237

Query: 1070 ------------------------------VLPMVIVKGIKTVERVVIAEKEKEK----- 1094
                                          +L    ++G+  VER  I EK   +     
Sbjct: 1238 RIRPLKGALDDDEEGDGNEMDHTLKIFQAHMLDHCTLRGVSGVERAFINEKTHARIMPDG 1297

Query: 1095 --RKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIID 1152
               K  E+ + K++ L   G+ L  V+  +G+D  +T SN   E+ +  GIEA R  ++ 
Sbjct: 1298 SLSKSAEDDQCKEWILETSGSALADVLTIDGVDATRTYSNQFIEILEVFGIEATRTALLR 1357

Query: 1153 EINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLF 1212
            E+ + +   G  ++ RH+ LL D+MT RG ++ +TR GI + D   LM  SFE+T + L 
Sbjct: 1358 ELTQVLAFDGSYVNHRHLALLIDIMTSRGFLMAVTRHGINRSDTGALMRCSFEETVEILL 1417

Query: 1213 NASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
             A+     D   GVSE +I+G   P GTG   +
Sbjct: 1418 EAAAFAELDDCRGVSENLILGQMAPAGTGEFDV 1450


>gi|21280521|gb|AAM45153.1|AF395835_1 RNA polymerase II largest subunit [Cercomonas ATCC50319]
          Length = 1014

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 290/716 (40%), Positives = 416/716 (58%), Gaps = 31/716 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+P  +  +F+ +TD D   L L   +  P   ++T + VPP  +RPSV++D S    +D
Sbjct: 132 LSPQKIYDIFRNITDEDMTALGLDPVNAHPSWFLLTVLPVPPPPVRPSVMLDASTRASDD 191

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  I++ N  L+++  +  +        + LQ  VA   + ++ G+P S  +V R 
Sbjct: 192 LTYKLGDIVKHNEQLKKQEAQGAAEHILQDTHDLLQFSVATLFDXEISGLPRSDNEVVRL 251

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
            + FV+RL GK GR RGNL GKRV+++ RTVI+ DPNL + +V +P  +A  LT+PE V+
Sbjct: 252 SNQFVKRLVGKGGRIRGNLMGKRVDFSARTVITGDPNLSVDQVGVPRSIAMTLTFPEMVT 311

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
             NI ++R+ + NGP+ +PGAR I   DG  R+     +      L+ G  ++RH+ DGD
Sbjct: 312 RFNIAQMRRLVANGPNVHPGARTIIRDDG-KRIDLRFVKKSSDQHLEVGYRIERHIHDGD 370

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           V+LFNRQPSLH+MSIM H+ R+MPW T R N S   PYNADFDGDEMN+HVPQ+   R E
Sbjct: 371 VILFNRQPSLHKMSIMAHKIRVMPWSTFRLNLSCTTPYNADFDGDEMNLHVPQSMMTRAE 430

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRA-AFS-LMCCYMGDGMD 439
           AL +M     + +P+  + ++   QD L      T +D F D+A  F+ LM     DG  
Sbjct: 431 ALEIMLCPRQIVSPQANKPVIGIVQDTLLGCMKFTYRDNFLDKAMVFNILMHLENWDGT- 489

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
              +P P ILKPV LW+GKQ+FS++I P  NM    N                G  +   
Sbjct: 490 ---VPIPCILKPVPLWSGKQIFSLII-PRVNMERKAN----------------GHPDSEH 529

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
             M  ND  V     +L+ G + K T+GN     L  V+  + G  AT   +    K+  
Sbjct: 530 TVMSVNDTRVRIEQGQLLMGVVDKQTVGN-TPGSLIHVIWNECGFEATRQFLAECQKVVN 588

Query: 560 RWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
            ++ ++GFS+GI D + P   L   +  +     EV N+ IK+   G L  +PG    ++
Sbjct: 589 YFLMHYGFSVGIGDTIAPPSTLEKIESTIKQAKKEVLNL-IKKAXSGNLDRQPGSTNLES 647

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            E  +  +LN+  +DAGK+    L   N+   M   GSKG+ INI Q++ACVGQQ+V G+
Sbjct: 648 FENQVNGVLNKAADDAGKSVKAQLTKMNNINAMVSAGSKGNAINICQIIACVGQQNVSGK 707

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R P GF  R+LPHF +    P +KGFV+NS+  GL+  EFFFH MGGREGL+DTAVKTA+
Sbjct: 708 RIPFGFHGRTLPHFNKGDLSPESKGFVSNSYLQGLTPQEFFFHAMGGREGLIDTAVKTAE 767

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFD 794
           TGY+ RRL+KA+ED+ I+YD +VRN+ G I+QF YG+DGMD   +E +  + L  D
Sbjct: 768 TGYIQRRLVKAMEDVMIKYDATVRNSLGDIIQFAYGEDGMDGVYIEKQKLDSLKMD 823


>gi|45439293|gb|AAS64314.1| DNA-dependent RNA polymerase II largest subunit [Amanita
           phalloides]
          Length = 1007

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 304/768 (39%), Positives = 442/768 (57%), Gaps = 60/768 (7%)

Query: 35  CGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFL 94
           CG++   ++K    L + + ++K  +             E   ++        P  V   
Sbjct: 92  CGHVQPQIRKEGLKLFVHYKKTKDDD-------------EDMKSLQPEKRPFTPSEVYTT 138

Query: 95  FKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRI 150
           FK+M+D+D  +L LS+   RPE +I+T + VPP  +RPS+ +DG +  +E+D+T +L  I
Sbjct: 139 FKKMSDSDLHLLGLSDEYARPEWMILTVLPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDI 198

Query: 151 IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRL 209
           I+ +A++++   E   A       + LQ  VA Y+++D+ GVP ++Q + RP+     RL
Sbjct: 199 IKASANVRRCEQEGAPAHVINEFEQLLQFHVATYMDNDIAGVPQALQKSGRPVKAIRARL 258

Query: 210 KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
           KGK+GR RGNL GKRV+++ RTVI+ DPNL++ EV +P  +A  LTYPERV+ +NI  L+
Sbjct: 259 KGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIGYLQ 318

Query: 270 QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQP 329
           + ++NGP  YPGAR +    G    L  ++  +    L+ G IV+RHL+DGD VLFNRQP
Sbjct: 319 ELVRNGPTAYPGARYVVRDTGERIDL--RYNKRADAHLQYGWIVERHLKDGDFVLFNRQP 376

Query: 330 SLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQ 389
           SLH+MS+M HR ++MP+ T R N SV  PYNADFDGDEMNMH+PQ+EE R E   +  V 
Sbjct: 377 SLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVP 436

Query: 390 NNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAIL 449
             + +P+  + ++   QD L     +T +DTF D      +  ++ D    V  P PAIL
Sbjct: 437 RQIISPQANKPVMGIVQDTLCGIRKLTLRDTFLDWNQVQNILLWVPDWDGSV--PIPAIL 494

Query: 450 KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFV 509
           KP  LW+GKQ+ S+ I    N+         +   SN +     D+ + IE         
Sbjct: 495 KPKPLWSGKQILSMTIPRGINIH-----RSPDPKSSNPVF----DDGMMIE--------- 536

Query: 510 YFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSI 569
              N E+I G + K T+G  ++ GL  V+ R+ G  AT   +  +  +   W+ ++GFSI
Sbjct: 537 ---NGEIIFGIVEKKTVG-ASQGGLVHVVFREKGPEATRMLLTGIQMVVNYWLFHNGFSI 592

Query: 570 GIDDV--------QPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEA 621
           GI D           +K + D+K  +           I++     L+ KPG    ++ E+
Sbjct: 593 GIGDTIVDLPTMAYIRKSIQDRKSNVAK--------LIEDAIHDHLKAKPGMTLRESFES 644

Query: 622 VITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
           +    LN  R+ +GK     +   N+   M   GSKGS INISQM  CVGQQSV GRR P
Sbjct: 645 MAERELNLARDRSGKYAQEHMKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGRRIP 704

Query: 682 NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
            GF  RSLPHF +    P A+GFV NS+  GL+  EFFFH M GREGL+DTAVKTA+TGY
Sbjct: 705 FGFRHRSLPHFTKDDFGPDARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 764

Query: 742 MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGE 789
           + RRL+KALED+ + YD +VRN+ G ++QF+YG+DGMD A +E ++ E
Sbjct: 765 IQRRLVKALEDVMVCYDGTVRNSLGDLIQFIYGEDGMDGAFIEKQTIE 812


>gi|386683448|gb|AFJ19492.1| DNA-directed RNA polymerase II subunit [Peltigera malacea]
          Length = 1737

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 291/711 (40%), Positives = 421/711 (59%), Gaps = 40/711 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQS--NE 140
           + P N L +F+ ++  + + + L+    RPE +IIT + VPP  +RPS+ +DG      E
Sbjct: 208 ITPQNALNIFRHISSEEIQRMGLNVDYARPEWMIITVLPVPPPPVRPSIAVDGGNGMRGE 267

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VA 199
           +D+T +L  II+ N +++    E + A       + LQ  VA Y+++D+ G P ++Q   
Sbjct: 268 DDLTYKLGDIIRANGNVRTCEAEGSPAHVVAEFEQLLQFHVATYMDNDIAGQPQALQKSG 327

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYPE 
Sbjct: 328 RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPET 387

Query: 260 VSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
           V+ +NI+KL Q ++ GP+ +PGA+ +IR  D   R+     +    + L+ G  V+RH+ 
Sbjct: 388 VTPYNIQKLHQLVKTGPNDHPGAKYVIR--DTGERIDLRHHKRAGEISLQYGWKVERHII 445

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE 
Sbjct: 446 DGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 505

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
           R E   L  V  N+ +P+    L+   QD L   + I R+D F  +     +  ++ D  
Sbjct: 506 RAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEMVMNILLWVPD-W 564

Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRT--EGDEE 496
           D V +P PAILKP   WTGKQ+ S++I P  N                 L R+  EG   
Sbjct: 565 DGV-IPQPAILKPRPKWTGKQIISLIIPPGLN-----------------LFRSSSEGPSP 606

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
           +       ND  +     EL+ G   K ++G    +G+  ++  + G  A     N    
Sbjct: 607 L-------NDDGLQVSGGELMYGLFNKKSVG-ATSNGVVHIIFNEKGPDAAMSFFNGCQT 658

Query: 557 LSARWIGNHGFSIGIDDVQPKK-ELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           +   W+ ++GFSIGI D  P +  +   +  +  +  EV  +  +   E +L+  PG + 
Sbjct: 659 VVNYWLLHNGFSIGIGDTIPDRVTIQAIEAAVNEQKAEVAEI-TRSATENELEPLPGMNV 717

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            +T E+ +   LN+ R+DAG     SL   N+   M++ GSKGS INISQM A VGQQSV
Sbjct: 718 RETFESKVQKALNKARDDAGTVTEKSLKDINNATQMARSGSKGSTINISQMTAVVGQQSV 777

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAVK
Sbjct: 778 EGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 837

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           TA+TGY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D  ++EG+
Sbjct: 838 TAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEGQ 888



 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/400 (33%), Positives = 202/400 (50%), Gaps = 55/400 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1060 SRFCKAAVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKN 1119

Query: 955  ISTPIITA--ELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T   E + + N+ +A++++  +E T L  V ++ +I     + S V+  D E +
Sbjct: 1120 IKTPSMTVYQEGDKSGNKESAKLLRSAVEHTTLRSVTETTEIYYDPDVYSTVVEADKEIV 1179

Query: 1013 QDAHLCINADIVKES------------------IVQTPKIKLKQQHIKVLDFRKLEIFPP 1054
            +   +    D   +S                   VQ    K+K +++K L      IF  
Sbjct: 1180 ESYMILPEEDQRAQSRWLLRITLGRRSLLDKGLTVQDVASKIKSEYMKDLAV----IFSD 1235

Query: 1055 --VDKSKIHFE-----------------LYSLKN-VLPMVIVKGIKTVERVVIAEKEKEK 1094
               D+  I                    L  L+N +L  + ++G+  +ER  +    K K
Sbjct: 1236 NNADEQVIRIRMIQEGKDDDDDLEEDVMLKRLENHLLDTLTLRGVPGIERAFL--NTKTK 1293

Query: 1095 RKVKENG----EKK-----KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
             ++KE+G    +KK     ++ L   G+ L  V+   G+D  +T SN   EV +  GIEA
Sbjct: 1294 VRMKEDGALVMDKKDPLCTEWFLDTSGSALGQVLAIPGVDTTRTYSNSFIEVFEVFGIEA 1353

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
             R  ++ E+   +   G  ++ RH+ LL D+MT RG ++ ITR GI + D   LM  SFE
Sbjct: 1354 TRSALMRELTAVLAFDGSYVNHRHLALLVDVMTSRGHIMAITRHGINRADTGALMRCSFE 1413

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            +T + L  A+  G  D   GVSE +++G   PLGTG L+I
Sbjct: 1414 ETVEILLEAAACGELDDCRGVSENVMLGQLAPLGTGELEI 1453


>gi|435852040|ref|YP_007313626.1| DNA-directed RNA polymerase subunit A' [Methanomethylovorans
           hollandica DSM 15978]
 gi|433662670|gb|AGB50096.1| DNA-directed RNA polymerase subunit A' [Methanomethylovorans
           hollandica DSM 15978]
          Length = 880

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 278/702 (39%), Positives = 403/702 (57%), Gaps = 29/702 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  +   F+ ++D D +V+ +     RPE +I+T + VPP+ +RPS+ ++  Q +E+D
Sbjct: 175 LTPTEIRDRFENISDDDVKVIGMDPSCARPEWMILTVLPVPPVTVRPSITLESGQRSEDD 234

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N   Q+              WE LQ  V  + +++V GVP +  +  RP
Sbjct: 235 LTHKLVDIIRINQRFQENRDAGAPQLIIEDLWELLQYHVTTFFDNEVSGVPPARHRSGRP 294

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTV+SPDPNL I EV +P  +A  +T PERV 
Sbjct: 295 LKTLTQRLKGKEGRFRGSLSGKRVNFSARTVVSPDPNLSINEVGVPEAIAIQMTIPERVI 354

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
           + NIE LR  I  G D +PGA  +  PD     +    + +LA +++ G +V+R L DGD
Sbjct: 355 ERNIELLRMYILKGSDVHPGANYVIRPDERRIKITENNKEELAEKVEKGWVVERQLMDGD 414

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
            VLFNRQPSLH+MSIM H+ +++P +T R N +VC PYNADFDGDEMNMHV QTEE+R E
Sbjct: 415 TVLFNRQPSLHKMSIMAHQVKVLPNKTFRLNPAVCPPYNADFDGDEMNMHVLQTEESRAE 474

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDT-FYDRAAFSLMCCYMGDGMDR 440
           A +LM VQ N+ +P+ G  ++    D ++  FL+TR +       A  L+        + 
Sbjct: 475 ASILMQVQENILSPRFGGPIIGGIHDHISGMFLLTRNENRITKNEALELL-----RKAEI 529

Query: 441 VDLPTPAILKPV--ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
            +LP PA  K      W GKQ+FS ++    N          E  +   + + E      
Sbjct: 530 RELPEPAGYKETGEPYWNGKQIFSQILPKGLNAEFPA-----EVCFKCDVCKKEA----- 579

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
               C  + +V  RN E+I G + +  +G   K  +   +++ YG  A +  ++   +L+
Sbjct: 580 ----CEYNAYVVIRNGEMIQGTIDERAIG-AFKGIILDKVVKTYGTTAGAKFIDDFTRLA 634

Query: 559 ARWIGNHGFSIGIDDVQ-PKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
            R +   G S GI D   P+    + K  L     EV ++ I  Y   +L+  PG    +
Sbjct: 635 IRGVMKTGLSFGISDEDIPETAKKNIKEVLTKAESEVQDL-IAAYEAKELEPLPGRTLDE 693

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T+E  I   L + R+  G      L   NS +IM++ G++GS +N++QM ACVGQQ+V G
Sbjct: 694 TIEMKIMQTLGKARDQTGNIAGNELGLENSAVIMAKSGARGSMLNLTQMAACVGQQAVRG 753

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            R   G+  R+LPHF +      A GFV  S+ SGLS TE+FFH++GGREGLVDTAV+T+
Sbjct: 754 ERIRRGYAGRTLPHFDKGDLGADAHGFVKASYKSGLSPTEYFFHSIGGREGLVDTAVRTS 813

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
            +GY+ RRL+ AL+DL +QYD +VR   G IVQF YG+DG+D
Sbjct: 814 QSGYLQRRLVNALQDLEVQYDATVRETRGVIVQFKYGEDGID 855


>gi|171695074|ref|XP_001912461.1| hypothetical protein [Podospora anserina S mat+]
 gi|170947779|emb|CAP59942.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1748

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 305/801 (38%), Positives = 453/801 (56%), Gaps = 35/801 (4%)

Query: 1   MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
           +R+PK    R  D+ K+  + C  +A +    P  G  +     A    G   +   V  
Sbjct: 130 IRDPKTRFKRVWDICKA-KRVCDNLAPQK---PEDGSYDPNAGPADGGHGGCGNTQPVVR 185

Query: 61  SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLII 117
                  A+   K+ +        +L P   L +F+RM++ +   + L+    RPE +II
Sbjct: 186 QQALTLYAMVEHKDDEGVKTKEKKVLTPEMTLNIFRRMSEDEMVDIGLNISQARPEWMII 245

Query: 118 TNIAVPPIAIRPSVIMDGSQS---NENDITERLKRIIQTNASLQQELVEANSAFKSLAGW 174
           T + VPP  +RPS+ MDG+ +   NE+D+T +L  II+ N +++Q + E +         
Sbjct: 246 TVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVRQAISEGSPQHIITDYE 305

Query: 175 ETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVI 233
             LQ  VA Y+++D+ G P ++Q   RP+     RLKGK+GR RGNL GKRV+++ RTVI
Sbjct: 306 NLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVI 365

Query: 234 SPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTAR 293
           + D N+ + EV +P  +AR LT+PE V+ +NIEKL   ++NGP+++PGA+ +   DGT R
Sbjct: 366 TGDANISLDEVGVPRSIARTLTFPETVTPYNIEKLTGYVKNGPNEHPGAKYVIRSDGT-R 424

Query: 294 VLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNE 353
           +     +   A++L+ G  V+RHL DGD ++FNRQPSLH+ S+M HR R+MP+ T R N 
Sbjct: 425 IDLRHHKRAGALQLEYGWKVERHLIDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNL 484

Query: 354 SVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSF 413
           SV +PYNADFDGDEMN+HVPQTEE R E   L  V  N+ +P+    L+   QD L   +
Sbjct: 485 SVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQDTLAGVY 544

Query: 414 LITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRV 473
            +TR+DTF  +     +  ++ D  D V +P PAI KP   WTGKQ+ S++I        
Sbjct: 545 KLTRRDTFLTKEQVMDVMMWVPD-WDGV-IPLPAIWKPRPRWTGKQIISMVI-------- 594

Query: 474 YVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDG 533
                    +  N  +  +G+E    +    ++G +  +  +LI G L K ++G     G
Sbjct: 595 --------PSIINLAMGADGEER---DAPLKDEGLL-IQQGQLIYGLLTKKSVGAAGG-G 641

Query: 534 LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYE 593
           +  +   + G       +N   ++   W+ + G SIGI D  P  +  +   K I++   
Sbjct: 642 IIHLCYNELGPSGAMDFLNGCQRVVNYWLLHCGHSIGIGDTIPDDKTIELIEKHINDEKA 701

Query: 594 VCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQ 653
           V     K   E +L+  PG +  +T E  ++  LN  R+ AG +   SL   N+ + M++
Sbjct: 702 VVAKLTKMATENQLEALPGMNVRETFENKVSAALNTARDKAGTSTEKSLKDLNNAVTMAR 761

Query: 654 CGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGL 713
            GSKGS INISQM A VGQQ V G+R P GF  R+LPHF +    P A+GFV NS+  GL
Sbjct: 762 SGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGL 821

Query: 714 SATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLY 773
           + +EFFFH M GREGL+DTAVKTA+TGY+ RRL+KALED    YD +VRN+ G I+QF+Y
Sbjct: 822 TPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDAEAHYDGTVRNSLGDIIQFVY 881

Query: 774 GDDGMDPANMEGKSGEPLNFD 794
           G+DG+D   +E +  + +N +
Sbjct: 882 GEDGLDGIAIEKQKVDHMNLN 902



 Score =  177 bits (448), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 122/406 (30%), Positives = 195/406 (48%), Gaps = 59/406 (14%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1067 NRWSRSMVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKD 1126

Query: 955  ISTPIITAELECNDNENA----ARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDME 1010
            I TP +   L   D E A    A+ ++  +E T L  V    +I     + S VI  D +
Sbjct: 1127 IKTPSMVVYL---DKERATQEDAKSMRNLVEHTSLRSVTAMTEIYYDPDITSTVIPEDFD 1183

Query: 1011 TIQDAHLCINADIVKESIVQTP---KIKLKQQHIKVLDFRKLEIFPPVDKS--KIHFELY 1065
             ++   L  +    +    Q+    +I L +Q +     R  ++   + +   K    ++
Sbjct: 1184 LVESYFLIPDTSDSQPIDSQSRWLLRIMLDRQKMLDKGLRVEDVAAAIKQEYKKDVAVIF 1243

Query: 1066 SLKNVLPMVI-------------------------------------VKGIKTVERVV-- 1086
            S  N   MV+                                     ++G++ +ER    
Sbjct: 1244 SDNNAEEMVVRIRVIRQNDDKDADGNTIIEDDVMLKRLEKHLLDSCTLRGVEGIERAFLN 1303

Query: 1087 -------IAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQ 1139
                   + +  +   K KE   ++ Y L  +GT L+ V+  EG+D  +T +N +++V  
Sbjct: 1304 KTARLLELPDGSQTANKDKEPACEEWY-LDTQGTALREVLTVEGVDTTRTYTNDLYQVVD 1362

Query: 1140 TLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVL 1199
              GIEAAR  ++ E+ + +   G  ++ RH+ LL D+MT+RG +  +TR GI + D   L
Sbjct: 1363 VFGIEAARSALMAELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGAL 1422

Query: 1200 MLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            M  SFE+T + L  A+  G  D   G+SE +++G   P+GTG  ++
Sbjct: 1423 MRCSFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFEV 1468


>gi|355568192|gb|EHH24473.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca mulatta]
 gi|355753712|gb|EHH57677.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca fascicularis]
          Length = 1629

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 292/744 (39%), Positives = 431/744 (57%), Gaps = 49/744 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  V  +FKR++D +C VL +     RPE +I+T + VPP+++RP+V+M GS  N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
           D+T +L  I++ N  L++      +A       + LQ  VA  +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334

Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
           PL    QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P  +A  +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394

Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCI------- 312
           +  NI++L++ ++ G  +YPGA+ I   +G    L  +F  + + + L++G         
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKAPSQSAW 452

Query: 313 ---VDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMN 369
              V+RH+ DGD+V+FNRQP+LH+MS+M HR RI+PW T R N SV  PYNADFDGDEMN
Sbjct: 453 IIGVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMN 512

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +H+PQ+ E R E   L  V   + TP++   ++   QD LT+    T++D F +R     
Sbjct: 513 LHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMN 572

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKL 488
           +  ++     +V  P PAILKP  LWTGKQ+FS++I  H N +R +      E +   K 
Sbjct: 573 LLMFLSTWDGKV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKH 630

Query: 489 IRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
           I              P D  V   N ELI G L K +LG  +   L  +   + G   T 
Sbjct: 631 I-------------SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITR 676

Query: 549 GCMNRLAKLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL 607
              + +  +   W+   G +IGI D +   K   D +  +     +V  V  K +N  +L
Sbjct: 677 LFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NEL 735

Query: 608 QLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMV 667
           +  PG    QT E  +  ILN  R+  G +   SL   N+   M   G+KGS INISQ++
Sbjct: 736 EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 795

Query: 668 ACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGRE 727
           A VGQQ+V G+R P GF  R+LPHF +    P ++GFV NS+ +GL+ TEFFFH MGGRE
Sbjct: 796 AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 855

Query: 728 GLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           GL+DTAVKTA+TGY+ RRLIK++E + ++YD +VRN+   +VQ  YG+DG+        +
Sbjct: 856 GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------A 907

Query: 788 GEPLNFDRLLMKVKATCPPAGQRY 811
           GE + F  L     AT  P+ + +
Sbjct: 908 GESVEFQNL-----ATLKPSNKAF 926



 Score =  173 bits (439), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 124/401 (30%), Positives = 197/401 (49%), Gaps = 51/401 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            S++       G  +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1084 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1143

Query: 955  ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
              TP +T  L      +A R   +  R+E T L +V  +  I       S V+A D E +
Sbjct: 1144 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1203

Query: 1013 QDAHLCINADIVKESIVQTPKIKLKQQHIK------------------------------ 1042
               +   + D+ + S     +++L ++H+                               
Sbjct: 1204 NVYYEMPDFDVARISPWLL-RVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNA 1262

Query: 1043 ---VLDFRKL--------EIFPPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEK 1090
               VL  R +        E    VDK      L  ++ N+L  + ++GI+ + +V +   
Sbjct: 1263 EKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLP 1322

Query: 1091 EKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
            + + +K   + E+GE K   ++ L  +G  L  V+  + +D  +T SN I E+   LGIE
Sbjct: 1323 QTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIE 1382

Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
            A R  +  E+   +   G  ++ RH+ LL D MT RG ++ ITR G+ + D   LM  SF
Sbjct: 1383 AVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSF 1442

Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            E+T D L  A+ +G  D ++GVSE I++G   P GTG   +
Sbjct: 1443 EETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1483


>gi|418204398|gb|AFX61753.1| RNA polymerase I largest subunit, partial [Ascosphaera cf. larvis
           64254]
          Length = 1616

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 294/711 (41%), Positives = 417/711 (58%), Gaps = 31/711 (4%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSN-- 139
           ++ P     +FK ++  D  +L LS    RPE +IIT + VPP  +RPSV++ GS +N  
Sbjct: 193 VITPKEAREVFKNISSGDVRLLGLSNEYARPEWMIITVLPVPPPPVRPSVLVGGSGTNQR 252

Query: 140 -ENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQ 197
            E+D+T +L  I++ N ++ +   + +     L  +E L Q  VA Y+++D+ G P +MQ
Sbjct: 253 GEDDLTYKLAEIVRANQNVAR--CQVDGVGHGLQEFEALLQYHVATYMDNDIAGQPKAMQ 310

Query: 198 VA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTY 256
            + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +P+ +AR LTY
Sbjct: 311 KSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIARTLTY 370

Query: 257 PERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
            E V+ +NI KL   + NGP+ +PGA+ I  P G    L G         L+ G  V+RH
Sbjct: 371 TEVVTPYNISKLVAMVNNGPNIHPGAKYIIRPTGEKLNLVGNKTPNPGRLLQYGFKVERH 430

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           + DGDV+LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMN+HVPQ+E
Sbjct: 431 ILDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSE 490

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           E+R E   L  V  N+ +P+    L+   QD L   + I R+DTF  +     +  ++ D
Sbjct: 491 ESRAELKELALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKEHVMNIMMWVPD 550

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
             D V +P PAI+KP   WTGKQ+ S+++    N                 L+R + D  
Sbjct: 551 -WDGV-IPQPAIIKPRPRWTGKQIISMVLPSGLN-----------------LLRLDKDGA 591

Query: 497 IRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
              E   P ND   +    EL+ GQ  K T+G     G+   +  +YG        N   
Sbjct: 592 PLAERFSPINDSGCFIHGGELMFGQFSKKTVG-ATGGGVIHTIFNEYGPDVCMSFFNGTQ 650

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           ++   W+ ++GFSIGI D  P      K  + + E  E       +     L   PG + 
Sbjct: 651 RVVNYWLLHNGFSIGIGDTIPDANTVAKIEEAVRERKEEVEDITDDATRDALDPLPGMNI 710

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            +T E+ ++  LN  R+DAG     SL   N  + M++ GSKGS INISQM+A VGQQSV
Sbjct: 711 RETFESKVSRALNNARDDAGNVTEKSLKDCNHGVQMARSGSKGSTINISQMMAIVGQQSV 770

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAVK
Sbjct: 771 EGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 830

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           TA+TGY+ R+L+KALE++ ++YD +VRN+ G +VQF+YG+DG+D A++E +
Sbjct: 831 TAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVVQFIYGEDGLDGAHIENQ 881



 Score =  196 bits (497), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 151/509 (29%), Positives = 239/509 (46%), Gaps = 76/509 (14%)

Query: 790  PLNFDRLLMKVKAT--CPPAGQRYLSPQ----QVSEIVEKQLAAYGKESCSEAFLNSLRK 843
            P+N  R+L   K T          L P     QV E++++ +   G +S S     S   
Sbjct: 957  PINVQRILETAKTTFRIREGTVSDLHPSEVIPQVRELLDRLVVVRGDDSISREAQESATL 1016

Query: 844  FFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVE 903
             F  Q   L  ++ F        +  ++E   +K +      L+  +    +R+      
Sbjct: 1017 LFMCQ---LRSRLAF--------RRLVVEYSLNKLA------LQHVLGAIENRFARAIAS 1059

Query: 904  AGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAE 963
             G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK I TP +T  
Sbjct: 1060 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKNIKTPSMTVY 1119

Query: 964  L--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINA 1021
               E   N++A +V++ ++E T L  VA+ I+I     + + VI  D + ++  +  I  
Sbjct: 1120 QVPELAGNQDAVKVLRSKVEHTTLRSVAEMIEIYYDPDIRNTVIEADKDMVE-TYFIIPE 1178

Query: 1022 DIVKESIVQTPK-IKLKQQHIKVLDFRKLEIFPPVDKSKIHFE-----LYSLKN------ 1069
            D+ ++   Q+   ++L   HIK++D + L +    D+ K  FE     ++S  N      
Sbjct: 1179 DVQEKPEEQSQWLVRLVLSHIKLID-KGLTVQDVADRIKALFENDVNVMFSDDNSDQPVI 1237

Query: 1070 ------------------------------VLPMVIVKGIKTVERVVIAEKEKEK----- 1094
                                          +L    ++G+  VER  I EK   +     
Sbjct: 1238 RIRPLKGALDDDEEGDGNEMDHTLKIFQAHMLDHCTLRGVSGVERAFINEKTHARIMPDG 1297

Query: 1095 --RKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIID 1152
               K  E+ + K++ L   G+ L  V+  +G+D  +T SN   E+ +  GIEA R  ++ 
Sbjct: 1298 SLSKSAEDDQCKEWILETSGSALADVLTIDGVDATRTYSNQFIEILEVFGIEATRTALLR 1357

Query: 1153 EINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLF 1212
            E+ + +   G  ++ RH+ LL D+MT RG ++ +TR GI + D   LM  SFE+T + L 
Sbjct: 1358 ELTQVLAFDGSYVNHRHLALLIDIMTSRGFLMAVTRHGINRSDTGALMRCSFEETVEILL 1417

Query: 1213 NASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
             A+     D   GVSE +I+G   P GTG
Sbjct: 1418 EAAAFAELDDCRGVSENLILGQMAPAGTG 1446


>gi|150399424|ref|YP_001323191.1| DNA-directed RNA polymerase subunit A' [Methanococcus vannielii SB]
 gi|1173129|sp|P41556.1|RPOA1_METVS RecName: Full=DNA-directed RNA polymerase subunit A'
 gi|505292|emb|CAA51728.1| DNA-directed RNA polymerase [Methanococcus vannielii]
 gi|150012127|gb|ABR54579.1| DNA-directed RNA polymerase subunit A' [Methanococcus vannielii SB]
          Length = 889

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 279/732 (38%), Positives = 432/732 (59%), Gaps = 43/732 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L    V  + +++ + DC++L ++ R   PE +++T + VPP+ +RPS+ ++  + +E+D
Sbjct: 178 LTSSEVREILEKIPNEDCKLLGINSRVARPEYMVLTVLPVPPVTVRPSITLESGERSEDD 237

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N  L++ +            W+ LQ  +  Y +++  G+P +  +  RP
Sbjct: 238 LTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRP 297

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFR NL+GKRV ++ RTVISPDP L I EV IP  +A+ LT PE+V+
Sbjct: 298 LRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEVGIPELIAKELTVPEKVT 357

Query: 262 DHNIEKLRQCIQNGPDKYPGA----RMIRYPDGTARVLYGKFRN---QLAVE-LKSGCIV 313
            +NIE++R+ I+NG DK+PG     + ++  DG       K  +   ++ VE +  G +V
Sbjct: 358 PYNIERIRKLIENGSDKHPGVNYVIKKVKTKDGKEEEYKIKITDTNKKMWVENIVDGMVV 417

Query: 314 DRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVP 373
           +RHL DGDVVL+NRQPSLHRMSIM H+ +++P+RT R N  VC PYNADFDGDEMN+HVP
Sbjct: 418 ERHLGDGDVVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVCPPYNADFDGDEMNVHVP 477

Query: 374 QTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCY 433
           Q+EEAR EA  LM V+ ++ +P+ G  ++ +  DF++ ++++T  +   D A   L    
Sbjct: 478 QSEEARAEAETLMLVEKHIISPRYGGPIIGAIHDFVSGAYVLTSSNFIKDEALTLLKSSG 537

Query: 434 MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
            G  +   D     +   +E ++GK LFS  + P       +NL  K K    K ++ + 
Sbjct: 538 FGSELGEPDF----VENGIEYYSGKSLFSKTL-PKG-----LNLQYKAKV-CKKCVQCKR 586

Query: 494 DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGL-YSVLLRDYGAHATSGCMN 552
           +E       C ND FV  RN  L+ G + K   G G + G+  + +++D+G+      ++
Sbjct: 587 EE-------CENDAFVIIRNGRLVQGVIDKN--GFGAETGVVLNTIVKDFGSEDARTFLD 637

Query: 553 RLAKLSARWIGNHGFSIGIDD----VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
              K+S + +   GF+ GIDD     +  +E+ D   K  S+  E+    ++ Y  G L 
Sbjct: 638 SATKMSVKSMMLRGFTTGIDDEDIPSEAIQEIQDLLDKAESDVQEI----VERYEGGTLD 693

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
             PG    ++ EA I  IL + R+D GK     L   N   +M++ G++GS +NI+ M A
Sbjct: 694 PLPGRGIEESREAYIMQILGKARDDTGKVAEKYLSKENHAALMARTGARGSLLNITMMAA 753

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            VGQQSV G R   G+  R+LPHF   + +  + GFV + +  GL+ TE+FFH MGGREG
Sbjct: 754 SVGQQSVRGGRVFRGYRGRTLPHFGEGSLDAKSHGFVRSCYKKGLAPTEYFFHAMGGREG 813

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSG 788
           LVD AV+TA +GYM RRL+ AL+D+  +YD +VR++ G IVQF YG+D +DP+  +   G
Sbjct: 814 LVDQAVRTAQSGYMQRRLVNALQDIKAEYDGTVRDSRGIIVQFNYGEDLVDPSKAD--HG 871

Query: 789 EPLNFDRLLMKV 800
           + ++ D++  KV
Sbjct: 872 KGVDLDKVFTKV 883


>gi|238487198|ref|XP_002374837.1| DNA-dependent RNA polymerase II largest subunit, putative
           [Aspergillus flavus NRRL3357]
 gi|317143741|ref|XP_001819667.2| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus oryzae
           RIB40]
 gi|220699716|gb|EED56055.1| DNA-dependent RNA polymerase II largest subunit, putative
           [Aspergillus flavus NRRL3357]
          Length = 1744

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 293/714 (41%), Positives = 422/714 (59%), Gaps = 39/714 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QSN 139
           + P   L +F+ ++  D  ++ LS    RPE +++T + VPP  +RPSV++ GS   Q  
Sbjct: 214 ITPQMALNIFRNISHEDVRIMGLSNDYARPEWMVLTVLPVPPPPVRPSVLVGGSTSGQRG 273

Query: 140 ENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVPF 194
           E+D+T +L  I++ N ++Q+   E         F+SL     LQ  VA Y+++D+ G P 
Sbjct: 274 EDDLTYKLAEIVRANQNVQRCEQEGAPEHVVREFESL-----LQYHVATYMDNDIAGQPK 328

Query: 195 SMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           +MQ + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +P  +AR 
Sbjct: 329 AMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIART 388

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIV 313
           LTYPE V+ +NI+KL+Q + NGP+++PGAR I   +G  R+     +     +L  G  V
Sbjct: 389 LTYPEVVTPYNIDKLQQLVSNGPNEHPGARYIVRDNG-ERIDLRHAKRAGGQQLLYGWKV 447

Query: 314 DRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVP 373
           +RH+ DGDV+LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMN+HVP
Sbjct: 448 ERHVMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVP 507

Query: 374 QTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCY 433
           Q+EE+R E L L  V  N+ +P+    L+   QD L   + I R+DTF  +     +  +
Sbjct: 508 QSEESRAELLQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKEQVMNLMMW 567

Query: 434 MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
           + D  D V +P PAILKP   WTGKQ+ S+ +    N                 L+R + 
Sbjct: 568 VPD-WDGV-IPPPAILKPRPRWTGKQIISMALPSGLN-----------------LLRVDK 608

Query: 494 DEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
           D     E   P NDG +     +L+ G   K T+G  +  G+   +  +YG        N
Sbjct: 609 DNSALSEKFAPLNDGGLLIHGGQLMYGMFSKKTVG-ASGGGVIHTIFNEYGPGTAVAFFN 667

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
               +   W+ ++GFSIGI D  P      +    + E  +          +  L+  PG
Sbjct: 668 GAQAIVNYWLLHNGFSIGIGDTIPDAVTIQRIENCVRERKKEVETITASATDNTLEPLPG 727

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
            +  +T E+ ++  LN  R++AG     SL   N+ + M++ GSKGS INISQM A VGQ
Sbjct: 728 MNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQ 787

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           QSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DT
Sbjct: 788 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 847

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           AVKTA+TGY+ R+L+KALE++ ++YD +VRN+ G I+QF+YG+DG+D A++E +
Sbjct: 848 AVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAHIENQ 901



 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/403 (33%), Positives = 200/403 (49%), Gaps = 56/403 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+      AG  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A  
Sbjct: 1071 SRFAKANAPAGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATN 1130

Query: 955  ISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
            I TP +T   E    +D E  A+ ++  +E T L  V ++ +I     + S VI  D + 
Sbjct: 1131 IKTPSMTVYQEPGRTHDKE-GAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTVIENDRDM 1189

Query: 1012 IQDAHLCINADIVKES----------IVQTPKI------------KLKQQHIK------- 1042
            ++ ++  I  D+  +S          I+  PK+            ++KQ + K       
Sbjct: 1190 VE-SYFIIPEDVTDDSSRQSKWLLRIILSRPKLLDKGLTVQDVATRIKQAYPKDIAVIFS 1248

Query: 1043 -------VLDFRKLEIFPPVDKSKIHFELYSLK----NVLPMVIVKGIKTVERVVIAEKE 1091
                   V+  R+++     +         +LK    ++L  + ++G+  VER  I   E
Sbjct: 1249 DNNADEQVIRIRQIQDHKEDEDDDDIEYDVTLKKLEQHLLDTLTLRGVNGVERAFI--NE 1306

Query: 1092 KEKRKVKENGEK---------KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLG 1142
            K K +V E+G           K++ L   G+ L  V+   G+D  +T SN   EV +  G
Sbjct: 1307 KSKVRVLEDGSLFTSKVDPLCKEWVLETSGSALGEVLAVPGVDATRTYSNQFIEVFEVFG 1366

Query: 1143 IEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLA 1202
            IEAAR  ++ E+ + +   G  ++ RH+ LL D+MT RG +  +TR GI + D   LM  
Sbjct: 1367 IEAARTAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRC 1426

Query: 1203 SFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            SFE+T + L  A+  G  D   GVSE +I+G   P GTG   I
Sbjct: 1427 SFEETVEILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDI 1469


>gi|9955855|dbj|BAB12227.1| RNA polymerase II largest subunit [Aspergillus oryzae]
 gi|83767526|dbj|BAE57665.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|391867452|gb|EIT76698.1| RNA polymerase II, large subunit [Aspergillus oryzae 3.042]
          Length = 1748

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 293/714 (41%), Positives = 422/714 (59%), Gaps = 39/714 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QSN 139
           + P   L +F+ ++  D  ++ LS    RPE +++T + VPP  +RPSV++ GS   Q  
Sbjct: 214 ITPQMALNIFRNISHEDVRIMGLSNDYARPEWMVLTVLPVPPPPVRPSVLVGGSTSGQRG 273

Query: 140 ENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVPF 194
           E+D+T +L  I++ N ++Q+   E         F+SL     LQ  VA Y+++D+ G P 
Sbjct: 274 EDDLTYKLAEIVRANQNVQRCEQEGAPEHVVREFESL-----LQYHVATYMDNDIAGQPK 328

Query: 195 SMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           +MQ + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +P  +AR 
Sbjct: 329 AMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIART 388

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIV 313
           LTYPE V+ +NI+KL+Q + NGP+++PGAR I   +G  R+     +     +L  G  V
Sbjct: 389 LTYPEVVTPYNIDKLQQLVSNGPNEHPGARYIVRDNG-ERIDLRHAKRAGGQQLLYGWKV 447

Query: 314 DRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVP 373
           +RH+ DGDV+LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMN+HVP
Sbjct: 448 ERHVMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVP 507

Query: 374 QTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCY 433
           Q+EE+R E L L  V  N+ +P+    L+   QD L   + I R+DTF  +     +  +
Sbjct: 508 QSEESRAELLQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKEQVMNLMMW 567

Query: 434 MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
           + D  D V +P PAILKP   WTGKQ+ S+ +    N                 L+R + 
Sbjct: 568 VPD-WDGV-IPPPAILKPRPRWTGKQIISMALPSGLN-----------------LLRVDK 608

Query: 494 DEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
           D     E   P NDG +     +L+ G   K T+G  +  G+   +  +YG        N
Sbjct: 609 DNSALSEKFAPLNDGGLLIHGGQLMYGMFSKKTVG-ASGGGVIHTIFNEYGPGTAVAFFN 667

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
               +   W+ ++GFSIGI D  P      +    + E  +          +  L+  PG
Sbjct: 668 GAQAIVNYWLLHNGFSIGIGDTIPDAVTIQRIENCVRERKKEVETITASATDNTLEPLPG 727

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
            +  +T E+ ++  LN  R++AG     SL   N+ + M++ GSKGS INISQM A VGQ
Sbjct: 728 MNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQ 787

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           QSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DT
Sbjct: 788 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 847

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           AVKTA+TGY+ R+L+KALE++ ++YD +VRN+ G I+QF+YG+DG+D A++E +
Sbjct: 848 AVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAHIENQ 901



 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/403 (33%), Positives = 200/403 (49%), Gaps = 56/403 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            SR+      AG  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A  
Sbjct: 1071 SRFAKANAPAGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATN 1130

Query: 955  ISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMET 1011
            I TP +T   E    +D E  A+ ++  +E T L  V ++ +I     + S VI  D + 
Sbjct: 1131 IKTPSMTVYQEPGRTHDKE-GAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTVIENDRDM 1189

Query: 1012 IQDAHLCINADIVKES----------IVQTPKI------------KLKQQHIK------- 1042
            ++ ++  I  D+  +S          I+  PK+            ++KQ + K       
Sbjct: 1190 VE-SYFIIPEDVTDDSSRQSKWLLRIILSRPKLLDKGLTVQDVATRIKQAYPKDIAVIFS 1248

Query: 1043 -------VLDFRKLEIFPPVDKSKIHFELYSLK----NVLPMVIVKGIKTVERVVIAEKE 1091
                   V+  R+++     +         +LK    ++L  + ++G+  VER  I   E
Sbjct: 1249 DNNADEQVIRIRQIQDHKEDEDDDDIEYDVTLKKLEQHLLDTLTLRGVNGVERAFI--NE 1306

Query: 1092 KEKRKVKENGEK---------KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLG 1142
            K K +V E+G           K++ L   G+ L  V+   G+D  +T SN   EV +  G
Sbjct: 1307 KSKVRVLEDGSLFTSKVDPLCKEWVLETSGSALGEVLAVPGVDATRTYSNQFIEVFEVFG 1366

Query: 1143 IEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLA 1202
            IEAAR  ++ E+ + +   G  ++ RH+ LL D+MT RG +  +TR GI + D   LM  
Sbjct: 1367 IEAARTAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRC 1426

Query: 1203 SFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            SFE+T + L  A+  G  D   GVSE +I+G   P GTG   I
Sbjct: 1427 SFEETVEILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDI 1469


>gi|397135818|gb|AFO11404.1| RNA polymerase I, partial [Kuraishia capsulata]
          Length = 870

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 305/791 (38%), Positives = 452/791 (57%), Gaps = 60/791 (7%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           ++    VL +F+ ++  DC+ L  +E   RPE ++IT + VPP  +RPSV    ++  E+
Sbjct: 14  LITAAEVLNVFRHISPQDCQRLGFNEDYARPEWMLITVLPVPPPPVRPSVAFTDTKRGED 73

Query: 142 DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  I++ N ++Q+  ++ +     S F++L     LQ  VA Y+++D+ G P ++
Sbjct: 74  DLTYKLADILKANINVQKLEMDGSPQHVISEFEAL-----LQYHVATYMDNDIAGQPQAL 128

Query: 197 Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q   RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P  +AR L+
Sbjct: 129 QKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLS 188

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
           YPE V+ +NI+KL + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+
Sbjct: 189 YPETVTPYNIQKLTEYVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIA--LQYGWKVE 246

Query: 315 RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
           RHL D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 247 RHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQ 306

Query: 375 TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
           +EE R E   +  V   + +P++ + ++   QD L     +T +D F  YD+    L   
Sbjct: 307 SEETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMLFWI 366

Query: 433 YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
              DG+    +P PAILKP  LW+GKQL S  I P     +Y             L R +
Sbjct: 367 PQWDGV----IPQPAILKPKPLWSGKQLLSTCI-PKG---IY-------------LQRFD 405

Query: 493 GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
           G        + P D  +   N E++ G + KAT+G     GL   ++R+ G    +    
Sbjct: 406 G------SLLSPKDSGMLIVNGEIMFGVVNKATVG-ATAGGLIHTVMREKGPQVCAQLFG 458

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
            + K+   W+ ++GFSIGI D    +E      + I E  E     I +     L+ +PG
Sbjct: 459 NIQKVVNYWLLHNGFSIGIGDAIADRETMRVITETIGEAKEKVQNIILDAQRNLLEPEPG 518

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
               ++ E  ++ +LN  R+ AGK+   SL   N+   M   GSKGS INISQM ACVGQ
Sbjct: 519 MTVRESFEQKVSKVLNEARDSAGKSAELSLKDSNNVKQMVTAGSKGSYINISQMSACVGQ 578

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           Q V G+R   GF DRSLPHF +      +KGFV NS+  GL+  EFFFH M GREGL+DT
Sbjct: 579 QIVEGKRISFGFADRSLPHFTKDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 638

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLN 792
           AVKTA+TGY+ RRL+KALED+ + YD + RN+ G ++QFLYG+DG+D   +E ++ +   
Sbjct: 639 AVKTAETGYIQRRLLKALEDIMVHYDGTARNSLGDVIQFLYGEDGIDGTQVEKQTVD--- 695

Query: 793 FDRLLMKVKATCPPAGQRY-LSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDK 851
                  +  T     +RY +     S+ ++ +L  YG E         L+K  + +  +
Sbjct: 696 ------TIPGTDDAFEKRYRVDLMNASQGIKPELVEYGTEILGSV---ELQKLLDEEYTQ 746

Query: 852 LDKKIKFVEDI 862
           L +  K++ D+
Sbjct: 747 LLEDRKYLRDV 757


>gi|407925500|gb|EKG18511.1| RNA polymerase II heptapeptide repeat eukaryotic [Macrophomina
           phaseolina MS6]
          Length = 1756

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 317/828 (38%), Positives = 464/828 (56%), Gaps = 66/828 (7%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGS---QS 138
           ++ P +VL +FK +TD     L L+    RPE +I+T + VPP  +RPS+ +DG+     
Sbjct: 212 VIKPQDVLNIFKLITDESLVTLGLNVNFARPEWMILTMLPVPPPPVRPSISVDGTGQGMR 271

Query: 139 NENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQ 197
            E+D+T +L  II+ NAS+++   E  +A   +  +E L Q  VA Y+++D+ G P + Q
Sbjct: 272 GEDDLTYKLADIIRANASIKRCHTEG-AAQHVIDDFEVLLQWHVATYMDNDLAGQPQAQQ 330

Query: 198 -VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTY 256
              R L     RLKGK GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTY
Sbjct: 331 KSGRALKTIRGRLKGKDGRLRGNLMGKRVDFSARTVITGDPNLDLDEVGVPRSIARTLTY 390

Query: 257 PERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
           PE V+  NI KL + ++NGP+++PGA+ +   DGT R+     +    ++L  G  V+RH
Sbjct: 391 PETVTPFNIAKLHELVKNGPNEHPGAKYVIRDDGT-RIDLRHHKRAGEIQLAYGWKVERH 449

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           +  GD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQTE
Sbjct: 450 IVSGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTE 509

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           E R E + L  V  N+ +P+    L+   QD L   + +  +D F  +     +  ++ D
Sbjct: 510 ETRAEVMQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCHRDVFLTKEMVMNILLWVPD 569

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
             D V +P PAILKP   WTGKQL S+ I         +NL    KT++           
Sbjct: 570 -WDGV-IPQPAILKPRPRWTGKQLLSLAIPD-------INLVKPGKTHAPI--------- 611

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
                   +D  V     EL+ G   K  +G  +  G+   +  + G  A  G  N   +
Sbjct: 612 --------DDSGVVIIGGELMYGLFNKKIVG-ASSGGIIHTVYNEKGWEAAVGFFNGSQR 662

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAA 616
           +   W+ +HGFSIGI D  P    + K  + I E  E       +  + KL   PG    
Sbjct: 663 IVNYWLLHHGFSIGIGDTIPDALTTAKIEEAIDEQKEEVARITDDATQDKLDPLPGMTKR 722

Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
           +T E+ ++  LN+ R++AG     S+   N+ + M+  GSKGS INISQM A VGQQSV 
Sbjct: 723 ETFESKVSVCLNKARDNAGAVTEKSVAKCNNAIAMAASGSKGSTINISQMTALVGQQSVE 782

Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
           G+R P GF  R+LPHF +    PAA+GFV NS+  GL+ +EFFFH M GREGL+DTAVKT
Sbjct: 783 GKRIPFGFKYRTLPHFTKDDYSPAARGFVQNSYLRGLTPSEFFFHAMAGREGLIDTAVKT 842

Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           A+TGY+ RRL+KALED+  +YD +VRN+ G +VQF+YG+DG+D   +E ++ + +N    
Sbjct: 843 AETGYIQRRLVKALEDVMAKYDGTVRNSLGDVVQFVYGEDGLDGVFIEKQTCDFVNCSDA 902

Query: 797 LMKVKATCPPAGQRYLSPQQ--VSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDK 854
             K K          + PQ    S+I+EK  A  G           +++ F+ +  +L++
Sbjct: 903 QFKRKFYV-----NVMDPQTSLSSDILEKADAIAGD--------IEVQRLFDEEYAQLEE 949

Query: 855 KIKFVEDI--GWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVK 900
              +V ++    DD+ Q+               ++  I+T  S++R+K
Sbjct: 950 DRIYVRNLTNDADDQRQL------------PLNIQRIIETAKSKFRIK 985



 Score =  193 bits (491), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 130/403 (32%), Positives = 207/403 (51%), Gaps = 53/403 (13%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+    V  G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N AK 
Sbjct: 1062 NRFNRAIVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKN 1121

Query: 955  ISTPII----TAELECNDNE--NAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALD 1008
            I TP +    T  L+ +D +    A++++ RIE T L  V + +++     + S VI  D
Sbjct: 1122 IKTPSMKVYTTTALDTSDEKKRTEAKLLRSRIEHTTLRSVTECVELYYDPDIQSTVIEAD 1181

Query: 1009 METIQDAHLCINADIVKESIVQT--------------------PKI--KLKQQHIKVL-- 1044
             + ++ ++  I  D  ++   Q+                    P++  ++K+++ K L  
Sbjct: 1182 ADLVE-SYFIIPDDTQEDIDSQSKWLMRIVLNRGRLLDKGLTVPQVATRIKEEYHKNLAV 1240

Query: 1045 ---DFRKLEIFPPV-----DKSKIHFELYSLKNVLPMV--------IVKGIKTVERVVIA 1088
               D    E+   +     D SK      + + +L M+         ++G+  VER  I 
Sbjct: 1241 IFSDNNAEELVIRIRLIKHDSSKEEEGEENDEKLLGMLEERLLDDLTLRGVPGVERAFIN 1300

Query: 1089 EKEKEKRK------VKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLG 1142
              +K+  +      + ++ E  ++ L   GT L  V+  EG+D  +T SN+ FE+ Q  G
Sbjct: 1301 SGQKQVTRDDGTLYMAKSDECTEWFLDTTGTALARVLTVEGVDASRTYSNNFFEIIQVFG 1360

Query: 1143 IEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLA 1202
            IEA R  ++ E  + +   G  ++ RH+ LL D+MT RG ++ +TR GI + D   LM  
Sbjct: 1361 IEATRTALLKEFTQVLAFDGSYVNHRHLALLVDVMTARGMIMAVTRHGINRADTGALMRC 1420

Query: 1203 SFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            SFE+T + L +A+  G  D   GVSE I++G   P GTG + I
Sbjct: 1421 SFEETVEILLDAAACGELDDCRGVSENIMLGQLAPAGTGEMDI 1463


>gi|448543659|ref|ZP_21625213.1| DNA-directed RNA polymerase subunit A' [Haloferax sp. ATCC BAA-646]
 gi|448550751|ref|ZP_21629054.1| DNA-directed RNA polymerase subunit A' [Haloferax sp. ATCC BAA-645]
 gi|448558948|ref|ZP_21633269.1| DNA-directed RNA polymerase subunit A' [Haloferax sp. ATCC BAA-644]
 gi|445706382|gb|ELZ58265.1| DNA-directed RNA polymerase subunit A' [Haloferax sp. ATCC BAA-646]
 gi|445711256|gb|ELZ63050.1| DNA-directed RNA polymerase subunit A' [Haloferax sp. ATCC BAA-645]
 gi|445711789|gb|ELZ63577.1| DNA-directed RNA polymerase subunit A' [Haloferax sp. ATCC BAA-644]
          Length = 974

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 284/757 (37%), Positives = 421/757 (55%), Gaps = 50/757 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++   F+ + D D   L +     RPE +I+T + VPP+  RPS+ +D  Q +E+D
Sbjct: 245 LMPSDIRDWFEDVPDEDLVTLGIDPDRSRPEWMILTVLPVPPVTARPSITLDNGQRSEDD 304

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N    +              WE LQ  V  +I++++ G P +  +  RP
Sbjct: 305 LTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFIDNEISGTPPARHRSGRP 364

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+A  +T    V+
Sbjct: 365 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVASEMTQTMNVT 424

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
           + NI++ RQ ++NGP+ +PGA  +R PDG    +  K   +LA +++ G  V+RHL DGD
Sbjct: 425 ERNIDEARQYVRNGPESHPGANYVRRPDGRRLKVTEKNCEELAEKVELGWEVNRHLVDGD 484

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +V+FNRQPSLHRMSIM H   +MP++T R N  VC PYNADFDGDEMNMH  Q EEAR E
Sbjct: 485 IVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAE 544

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD-TFYDRAAFSLMCCYMGDGMDR 440
           A +LM VQ  + +P+ GE ++ + QD ++ ++L+T  +  F +  A  L+         R
Sbjct: 545 ARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTHDNPEFVETQALDLLRAT------R 598

Query: 441 VD-LPTPAILKP--VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
           VD LP PA         WTG+Q+FS L+    NM            +++K+  T      
Sbjct: 599 VDTLPEPAGENEDGQPYWTGQQIFSELLPDDLNME-----------FTSKVGDT------ 641

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
                      V   + +L+ G + +  +G    + +   L +DY    +   +N +A L
Sbjct: 642 -----------VTIEDGQLVQGTIDEDAVGAFGGE-IVDALAKDYSKTRSRIFINEIASL 689

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
           + R I + G SIGIDD     E + +  + I   Y+     I+ Y  G+L+  PG    +
Sbjct: 690 AMRAIMHFGLSIGIDDESIPDEATAQVDEAIDAAYDKIQELIEIYEAGELESLPGRSVDE 749

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           TLE  I   L + R+ AG+         N  ++MS+ G++ S +N++QM  CVGQQ+V G
Sbjct: 750 TLEMKIMQRLGKARDSAGEIAEDHFEEDNPAVVMSKSGARASMLNLTQMAGCVGQQAVRG 809

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            R   G+  R+L H+ +      A GFV NS+ +GL+  EFFFH MGGREGLVDTAV+T+
Sbjct: 810 ERINRGYEGRTLSHYQKGDLSAEAHGFVENSYRAGLTPREFFFHAMGGREGLVDTAVRTS 869

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL- 796
            +GY+ RRLI AL +L  QYD SVR+  G IVQF +G+DG  P  +      P++ + + 
Sbjct: 870 KSGYLQRRLINALSELEAQYDGSVRDTSGTIVQFEFGEDGTSPVKVSSDDETPIDVENIA 929

Query: 797 --LMKVKATCPPAGQRYLS----PQQVSEIVEKQLAA 827
             ++  + +     +R+L     P  +SE  E ++ A
Sbjct: 930 DRILTSEFSSDEEKERFLGERAPPTNLSEHAEPRVDA 966


>gi|358030890|dbj|BAL15354.1| RNA polymerase II largest subunit, partial [Basidiobolus
           haptosporus]
          Length = 976

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 298/735 (40%), Positives = 436/735 (59%), Gaps = 40/735 (5%)

Query: 62  LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIIT 118
           + EF + I      K A+  +   L P  V  + K ++D D E + LS    RP+ +IIT
Sbjct: 120 IAEFKNGI------KGAMPESKQPLTPSQVHQILKNISDEDLEAMGLSTEFARPDWMIIT 173

Query: 119 NIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQ 178
            + VPP ++RPS+ +DGS   E+D+T +L  I++ N ++++   E   A       + LQ
Sbjct: 174 VLPVPPPSVRPSIQIDGSSRGEDDLTHKLADILKANVNVKRCEAEGAPAHVIDEFEQLLQ 233

Query: 179 VEVAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDP 237
             VA Y+++D+ G P ++Q + +PL     RLKGK+GR RGNL GKRV+++ RTVI+ DP
Sbjct: 234 FHVATYMDNDIVGQPQALQKSGKPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDP 293

Query: 238 NLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYG 297
           NL I EV +P  +AR LT PE V+ +NI +L++ ++NGP+++PGA+ I   D   R+   
Sbjct: 294 NLSIDEVGVPRSIARNLTVPEMVAPYNIGRLQELVRNGPNQHPGAKYI-IRDTGERIDLR 352

Query: 298 KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCN 357
             +    + L+ G  V+RHL++GDVV+FNRQPSLH+MS+M H+ R+MP+ T R N SV +
Sbjct: 353 YHQRAGDIPLQYGYKVERHLDNGDVVIFNRQPSLHKMSMMGHKVRVMPYSTFRLNLSVTS 412

Query: 358 PYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR 417
           PYNADFDGDEMNMHVPQ+EE + E   +  V   + +P++ + ++   QD L      T 
Sbjct: 413 PYNADFDGDEMNMHVPQSEETKVEIQEICMVPKQIISPQSNKPVMGIVQDTLCGVRKFTN 472

Query: 418 KDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNL 477
           +D F D+A   +    + D  + V + TPAILKP+ LWTGKQL S++I    N   Y + 
Sbjct: 473 RDCFMDKA-LVMNILMLVDDWNGV-IXTPAILKPLPLWTGKQLLSMVIPKGINCITYHS- 529

Query: 478 TVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
                           D+E     + P D  V   + ELISG + K T+G  N  G    
Sbjct: 530 -------------AHPDDEK--SDISPGDTKVVVEDGELISGIVCKKTVGASN-GGWVHT 573

Query: 538 LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKK-GKLISENYEVCN 596
           ++ ++G       +     +   W+  +GFSIGI D      ++D+K  + I+E  +   
Sbjct: 574 IMNEHGPEIAKKFLCGTQAVVNYWLLQNGFSIGIGDT-----IADEKTAEHITETIDSAK 628

Query: 597 VKIKEY----NEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMS 652
            ++ E      + KL+  PG    +T E+ ++  LNR R+ +G++   SL   N+   M 
Sbjct: 629 QRVSEIILAAQQDKLECAPGMTIRETFESKVSRELNRARDHSGQSAERSLKEENNVKQMV 688

Query: 653 QCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSG 712
             GSKGS +NISQM ACVGQQ V G+R P GF  R+LPHF +    P +KGFV NS+   
Sbjct: 689 VSGSKGSFVNISQMSACVGQQDVEGKRIPFGFKFRTLPHFTKDDYGPESKGFVENSYLRR 748

Query: 713 LSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFL 772
           L+  EFFFH MGGREGL+DTAVKTA+TGY+ RRL+KALED+ ++YD +VRN+ G I+QF 
Sbjct: 749 LTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGNIIQFC 808

Query: 773 YGDDGMDPANMEGKS 787
           YG+DGMD   +E ++
Sbjct: 809 YGEDGMDGCFVEKQT 823


>gi|113957476|gb|ABI49117.1| RNA polymerase II largest subunit [Heterodermia vulgaris]
          Length = 996

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 294/712 (41%), Positives = 424/712 (59%), Gaps = 48/712 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQ--SNE 140
           ++P   L +F++M+  D + L LS    RPE +IIT + VPP  +RPS+ +DG    + E
Sbjct: 117 ISPKMALEVFRQMSTEDNKKLGLSNDYARPEWMIITVLPVPPPPVRPSIKVDGGDGPTGE 176

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA 199
           +D+T +L  II+ N ++++   E   A   +  +ETL Q  VA Y+++D  G P ++Q +
Sbjct: 177 DDLTYKLGDIIRANGNVRRGETEGTPA-HIIEEFETLLQFHVATYMSNDTAGQPQALQKS 235

Query: 200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
            RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYPE
Sbjct: 236 GRPVKAIRARLKGKEGRVRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPE 295

Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
            V+ +NI+KL Q ++NGP+++PGAR +   D   R+     R    + L+ G  V+RH+ 
Sbjct: 296 TVTPYNIQKLHQLVKNGPNEHPGARYV-IRDTGERIDLRFHRRAGDLVLQYGWKVERHIV 354

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           DGD ++FNRQP  H+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE 
Sbjct: 355 DGDXIIFNRQPYXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 414

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GD 436
           R E   L  V  N+ +P+    L+   QD L   + I R+D F ++     +  ++   D
Sbjct: 415 RAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLNQEQVMNILLWVPEWD 474

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEE 496
           G+    +P PA+LKP  LWTGKQ+ S++I    N+       VK   Y+           
Sbjct: 475 GI----IPQPAVLKPTPLWTGKQIVSLVIPAGLNL-------VKGSDYAP---------- 513

Query: 497 IRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAK 556
                   +DG ++  + EL+ G L K  +G     G+  ++  + G  A     N    
Sbjct: 514 ------LKDDG-IFVSSGELMFGLLNKKVVGAA-MGGIIHIVYNEKGPEAAMNFFNGAQA 565

Query: 557 LSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYN----EGKLQLKPG 612
           +   W+ ++GFSIGI D  P +E      +LI E       ++ E      E +L   PG
Sbjct: 566 VVNYWLLHNGFSIGIGDTIPDRETI----RLIEEAVNAQKREVAEITQMATESRLDTLPG 621

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
            +  +T E+ ++  LN+ R+DAG     SL   N+   M++ GSKGS INISQM A VGQ
Sbjct: 622 MNVRETFESRVSKALNKARDDAGTVTEDSLKDLNNATQMARSGSKGSTINISQMTAVVGQ 681

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           QSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREG +DT
Sbjct: 682 QSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGPIDT 741

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           AVKTA+TGY+ RRL+KALED+  +YD ++RN+ G IVQF+YG+DG+D A++E
Sbjct: 742 AVKTAETGYIQRRLVKALEDVMAKYDGTIRNSLGDIVQFVYGEDGLDGAHIE 793


>gi|119643505|gb|ABL85574.1| RNA polymerase II largest subunit [Cetraria islandica]
          Length = 1003

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 290/707 (41%), Positives = 423/707 (59%), Gaps = 36/707 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS--NE 140
           + P   L +F+ ++  D + + LS    RPE +IIT + VPP  +RPS+ +DG      E
Sbjct: 136 ITPQMALNIFRHISADDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRGE 195

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA- 199
           +D+T +L  II+ N + ++   E + A       + LQ  VA Y+++D+ G P ++Q + 
Sbjct: 196 DDLTYKLGDIIRANGNARRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSG 255

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYPE 
Sbjct: 256 RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEX 315

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI+KL Q ++NGP+++PGA+ +   D   R+     +    + L+ G  V+RH+ D
Sbjct: 316 VTPYNIQKLHQLVKNGPNEHPGAKYV-IRDTGERIDLRHHKRAGEISLQYGWKVERHIVD 374

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R
Sbjct: 375 GDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 434

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V  N+ +P+    L+   QD L   + + R+D F  +     +  ++ D  D
Sbjct: 435 AEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPD-WD 493

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
            V +P PAI+KP+ +WTGKQ+ S++I    N                 L+R  G EE   
Sbjct: 494 GV-IPQPAIVKPLAMWTGKQILSLVIPTGLN-----------------LLR--GSEE--- 530

Query: 500 ETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
               P ND  +     EL+ G L K  +G  +  G+  ++  + G  A     N    + 
Sbjct: 531 -GFSPLNDDGLLISGGELMYGLLNKKVVG-ASGGGVIHIVFNEKGPEAAMSFFNGAQTVV 588

Query: 559 ARWIGNHGFSIGIDDVQPKKE-LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
             W+ ++GFSIGI D  P +  ++  +  +I +  EV  + +      +L+  PG +  +
Sbjct: 589 NYWLLHNGFSIGIGDTIPDRNTIAQIEEAVILQKKEVAAITLSA-TANELESLPGMNVRE 647

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           T E+ ++  LN+ R+DAG     SL   N+   M++ GSKGS INISQM A VGQQSV G
Sbjct: 648 TFESKVSKALNKARDDAGTVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEG 707

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
           +R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA
Sbjct: 708 KRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTA 767

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           +TGY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D  ++E
Sbjct: 768 ETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIE 814


>gi|397135870|gb|AFO11430.1| RNA polymerase I, partial [Metschnikowia agaves]
          Length = 872

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 285/715 (39%), Positives = 428/715 (59%), Gaps = 45/715 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  +L +F+ ++  DC  L  +E   RPE ++IT + VPP  +RPS+  + +   E+
Sbjct: 14  LLTPSEILSVFRHISPEDCHKLGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGED 73

Query: 142 DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  I++ N ++Q+  ++ +     S F++L     LQ  VA Y+++D+ G P ++
Sbjct: 74  DLTFKLADILKANINVQRLEIDGSPQHVISEFEAL-----LQFHVATYMDNDIAGQPQAL 128

Query: 197 Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q   RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +AR LT
Sbjct: 129 QKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLT 188

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
           YPE V+ +NI +L + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+
Sbjct: 189 YPEVVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVE 246

Query: 315 RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
           RHL D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 247 RHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 306

Query: 375 TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
           + E R E   +  V   + +P++ + ++   QD L     +T +D F  Y++    L   
Sbjct: 307 SPETRAEMSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYEQVMNMLYWI 366

Query: 433 YMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTE 492
              DG+    +P PA++KP  LWTGKQL S+ I    +++ +                  
Sbjct: 367 PNWDGV----IPPPAVIKPKPLWTGKQLLSMAIPKGIHLQRF------------------ 404

Query: 493 GDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
             ++ R + + P D  +   + E+I G + K T+G     GL   ++R+ G    +   +
Sbjct: 405 --DDGR-DMLSPKDKGILIVDGEIIFGVVDKKTVG-ATGGGLIHTVMREKGPQICAQLFS 460

Query: 553 RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 612
            + K+   W+ ++GFSIGI D    K+        I E  +     I +  + KL+ +PG
Sbjct: 461 SIQKVVNYWLLHNGFSIGIGDTIADKDTMRDVTITIQEAKQKVQEIILDAQQNKLEPEPG 520

Query: 613 CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 672
               ++ E  ++ +LN+ R+ AG++   +L   N+   M   GSKGS INISQM ACVGQ
Sbjct: 521 MTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQ 580

Query: 673 QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 732
           Q V G+R P GF DR+LPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DT
Sbjct: 581 QIVEGKRIPFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDT 640

Query: 733 AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           AVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D  ++E +S
Sbjct: 641 AVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTSVEKQS 695


>gi|282163888|ref|YP_003356273.1| DNA-directed RNA polymerase subunit A' [Methanocella paludicola
           SANAE]
 gi|282156202|dbj|BAI61290.1| DNA-directed RNA polymerase subunit A' [Methanocella paludicola
           SANAE]
          Length = 877

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 279/722 (38%), Positives = 417/722 (57%), Gaps = 28/722 (3%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P +V    + + D D EV  +   + RPE +++T + VPP+ +RPS+ ++  Q +E+D
Sbjct: 170 LMPTDVRDRLEMIPDEDIEVFGMDPKNARPEWMVLTVLPVPPVTVRPSITLESGQRSEDD 229

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N   Q+              WE LQ  V  YI++ V GVP +  +  RP
Sbjct: 230 LTHKLVDIIRINQRFQENRDAGAPQLIIEDLWELLQYHVTTYIDNAVSGVPPARHRSGRP 289

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDPNL I +V +P+ +AR +T P  V+
Sbjct: 290 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSINQVGVPMSIAREMTIPVTVT 349

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
             NIE  ++ ++ G + +PGA  ++ PDG    +  K  ++LA  L  G  +DR L+DGD
Sbjct: 350 PFNIESTKEYVRRGSENHPGANYVKRPDGRRLKVTDKNCSELADALDIGWKIDRQLKDGD 409

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +VLFNRQPSLHRMSIM H  ++MP +T R N +VC PYNADFDGDEMN+HVPQ  EA  E
Sbjct: 410 IVLFNRQPSLHRMSIMGHFVKVMPNKTFRLNPAVCAPYNADFDGDEMNLHVPQNMEAMAE 469

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
           A +LM VQ N+ +P+ G  ++    D ++  +L+T+    +       +   +G      
Sbjct: 470 ARILMLVQENILSPRFGGPIIGGLHDHISGIYLLTKGYQMFSETEALDVVRKVGIK---- 525

Query: 442 DLPTPA-ILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           +LP PA +    + W+GKQ+FSV++    +M           TY  K+     + E+  +
Sbjct: 526 ELPEPAKVENGAQYWSGKQIFSVILPKTLSM-----------TYKAKICE---NCEVCKK 571

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
             C  D +V  R+  L  G + +  +G      +   +++ Y     +  ++ + +L+ R
Sbjct: 572 EECEKDAYVVIRDGVLKCGTVDEKAIG-AFSGKIVDRIVKTYSEDTAAKFIDDVTRLAIR 630

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
            I   GFS GI D    +E   +   +I ++ +     I+ ++ G+L+  PG    +TLE
Sbjct: 631 AIMRFGFSYGISDTDIPREAKVQTTDIILDSEKQVKKLIEAFDAGELESLPGRTLKETLE 690

Query: 621 AVITDILNRIREDAGKACMGSLP--WRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
             I   L + R+ AG      L     NS +IM++ G++GS +N++QM  CVGQQSV G 
Sbjct: 691 LRIMQELAKARDAAGSIAGKHLASEGNNSAVIMARSGARGSFLNLTQMTGCVGQQSVRGE 750

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R   G+ DR+LPHF        ++GFV +S+  GL+ TEFFFH MGGREGLVDTAV+T+ 
Sbjct: 751 RIMRGYSDRTLPHFQPGDLGADSRGFVESSYKKGLNPTEFFFHAMGGREGLVDTAVRTSQ 810

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
           +GY+ RRL+ AL+DL ++YD +VR   G IVQF YG+DG+DP  M+   GE +N   ++ 
Sbjct: 811 SGYLQRRLVNALQDLEVKYDGTVRETRGVIVQFEYGEDGVDP--MKSDYGEGVNVQHIVE 868

Query: 799 KV 800
            V
Sbjct: 869 TV 870


>gi|374629649|ref|ZP_09702034.1| DNA-directed RNA polymerase, subunit A' [Methanoplanus limicola DSM
           2279]
 gi|373907762|gb|EHQ35866.1| DNA-directed RNA polymerase, subunit A' [Methanoplanus limicola DSM
           2279]
          Length = 881

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 285/727 (39%), Positives = 420/727 (57%), Gaps = 35/727 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++    +++ D D  +L ++ R   PE  ++T + VPP+ +RPS+I++  Q +E+D
Sbjct: 172 LTPSDIRSRLEKIPDEDLHLLGINARVARPEWTLLTVLPVPPVTMRPSIILENGQRSEDD 231

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N   ++              WE LQ  V  Y++++V G P +  +  RP
Sbjct: 232 LTHKLVDIIRINQRFKENQDAGAPQLIIEDLWELLQYHVTTYMDNEVAGCPPARHRSGRP 291

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK GRFRG+LSGKRV ++ RTVISPDPNL I EV IP+ +A  ++ P RV+
Sbjct: 292 LKTISQRLKGKDGRFRGSLSGKRVNFSARTVISPDPNLSINEVGIPLAIANEMSVPIRVT 351

Query: 262 DHNIEKLRQCIQNGP-----DKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
             NI+++RQ +  GP     +   GA     PDG    L    R  +A  L+ G  VDR 
Sbjct: 352 PFNIDEVRQMVTTGPVRPNLNSPCGANYAIRPDGRRVRLTDMTRESVAEMLEPGWTVDRQ 411

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           L + D+VLFNRQPSLHRMSIM HR  +M  +T R N +VC PYNADFDGDEMN+HVPQTE
Sbjct: 412 LRNTDIVLFNRQPSLHRMSIMAHRIVLMDGKTFRLNPAVCPPYNADFDGDEMNLHVPQTE 471

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
           EAR EA +L  VQ N+ +P+ G  ++    D ++  F++T    ++D+ A      Y+  
Sbjct: 472 EARAEAHMLASVQENILSPRFGGPIIGGIHDHISGIFILTHTLRWFDKKAV----LYLLQ 527

Query: 437 GMDRVDLPTPAILKP-VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSN-KLIRTEGD 494
                 LP P  ++  ++ W+ KQ+FS+++    NM VY     +  + SN    + EG 
Sbjct: 528 SSTPEHLPEPGKVEDGIDYWSNKQVFSMILPDGLNM-VY-----RASSCSNCDKCKQEG- 580

Query: 495 EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDG-LYSVLLRDYGAHATSGCMNR 553
                   C  D FV  +N ELI G + K ++G    DG +   ++R  G       ++ 
Sbjct: 581 --------CDRDAFVRIKNGELICGTIDKKSIGA--FDGVILQRIIRTAGLGRGRQFVDD 630

Query: 554 LAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
           + KLS R I   GFS GIDD    K    +  +++    +    +I+ Y +G+L+  PG 
Sbjct: 631 VTKLSIRGIMYDGFSFGIDDEDLTKIEYRQIDEVLDSAADDVERRIRIYEDGQLEPMPGR 690

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              +TLE  I  +L + R+  G      L   NS ++M+  G++GS +N++QM  C+GQQ
Sbjct: 691 TLEETLEMQIMQVLGKARDRTGDIAGRHLGLSNSAVVMAVSGARGSMLNLTQMAGCIGQQ 750

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
           +V G R   G+  R+LPHF +  +   A GFV+NS+ SGL+ TEFFFH +GGREGLVDTA
Sbjct: 751 AVRGERITRGYEGRTLPHFKKGDRGSEAHGFVSNSYKSGLNPTEFFFHAIGGREGLVDTA 810

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
           V+T+ +GY+ RR+I AL+DL + YD +VR +GG I+QF YG+D  DPA  +   G+P++ 
Sbjct: 811 VRTSQSGYLQRRMINALQDLKVGYDKTVRTSGGRIIQFKYGEDSTDPA--KSCYGDPVDV 868

Query: 794 DRLLMKV 800
             ++  V
Sbjct: 869 KGIIESV 875


>gi|448573316|ref|ZP_21640900.1| DNA-directed RNA polymerase subunit A' [Haloferax lucentense DSM
           14919]
 gi|445719081|gb|ELZ70764.1| DNA-directed RNA polymerase subunit A' [Haloferax lucentense DSM
           14919]
          Length = 974

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 285/757 (37%), Positives = 420/757 (55%), Gaps = 50/757 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++   F+ + D D   L +     RPE +I+T + VPP+  RPS+ +D  Q +E+D
Sbjct: 245 LMPSDIRDWFEDVPDEDLVTLGIDPDRSRPEWMILTVLPVPPVTARPSITLDNGQRSEDD 304

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N    +              WE LQ  V  +I++++ G P +  +  RP
Sbjct: 305 LTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFIDNEISGTPPARHRSGRP 364

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+A  +T    V+
Sbjct: 365 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVASEMTQTMNVT 424

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
           + NI++ RQ ++NGP+ +PGA  +R PDG    +  K   +LA +++ G  V+RHL DGD
Sbjct: 425 ERNIDEARQYVRNGPESHPGANYVRRPDGRRLKVTEKNCEELAEKVELGWEVNRHLVDGD 484

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +V+FNRQPSLHRMSIM H   +MP++T R N  VC PYNADFDGDEMNMH  Q EEAR E
Sbjct: 485 IVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAE 544

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD-TFYDRAAFSLMCCYMGDGMDR 440
           A +LM VQ  + +P+ GE ++ + QD ++ ++L+T  +  F +  A  L+         R
Sbjct: 545 ARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTHDNPEFVETQALDLLRAT------R 598

Query: 441 VD-LPTPAILKP--VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
           VD LP PA         WTG+Q+FS L+    NM            +S+K+  T      
Sbjct: 599 VDTLPEPAGENEDGQPYWTGQQIFSELLPDDLNME-----------FSSKVGDT------ 641

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
                      V   + +L  G + +  +G    + +   L +DY    +   +N +A L
Sbjct: 642 -----------VTIEDGQLTQGTIDEDAVGAFGGE-IVDALAKDYSKTRSRIFINEIASL 689

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
           + R I + G SIGIDD     E + +  + I   Y+     I+ Y  G+L+  PG    +
Sbjct: 690 AMRAIMHFGLSIGIDDESIPDEATAQVDEAIDAAYDKIQELIEIYEAGELESLPGRSVDE 749

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           TLE  I   L + R+ AG+         N  ++MS+ G++ S +N++QM  CVGQQ+V G
Sbjct: 750 TLEMKIMQRLGKARDSAGEIAEDHFEEDNPAVVMSKSGARASMLNLTQMAGCVGQQAVRG 809

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            R   G+  R+L H+ +      A GFV NS+ +GL+  EFFFH MGGREGLVDTAV+T+
Sbjct: 810 ERINRGYEGRTLSHYQKGDLSAEAHGFVENSYRAGLTPREFFFHAMGGREGLVDTAVRTS 869

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL- 796
            +GY+ RRLI AL +L  QYD SVR+  G IVQF +G+DG  P  +      P++ + + 
Sbjct: 870 KSGYLQRRLINALSELEAQYDGSVRDTSGTIVQFEFGEDGTSPVKVSSDDETPIDVENIA 929

Query: 797 --LMKVKATCPPAGQRYLS----PQQVSEIVEKQLAA 827
             ++  + +     +R+L     P  +SE  E ++ A
Sbjct: 930 DRILTSEFSSDEEKERFLGERAPPTNLSEHAEPRVDA 966


>gi|448560712|ref|ZP_21634160.1| DNA-directed RNA polymerase subunit A' [Haloferax prahovense DSM
           18310]
 gi|445722362|gb|ELZ74025.1| DNA-directed RNA polymerase subunit A' [Haloferax prahovense DSM
           18310]
          Length = 976

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 284/757 (37%), Positives = 420/757 (55%), Gaps = 50/757 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++   F+ + D D   L +     RPE +I+T + VPP+  RPS+ +D  Q +E+D
Sbjct: 247 LMPSDIRDWFEDIPDEDLITLGIDPDRSRPEWMILTVLPVPPVTARPSITLDNGQRSEDD 306

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N    +              WE LQ  V  +I++++ G P +  +  RP
Sbjct: 307 LTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFIDNEISGTPPARHRSGRP 366

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+A  +T    V+
Sbjct: 367 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVASEMTQTMNVT 426

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
           + NI++ RQ ++NGP+ +PGA  +R PDG    +  K   +LA +++ G  V+RHL DGD
Sbjct: 427 ERNIDEARQYVRNGPESHPGANYVRRPDGRRLKVTEKNCEELAEKVELGWEVNRHLVDGD 486

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +V+FNRQPSLHRMSIM H   +MP++T R N  VC PYNADFDGDEMNMH  Q EEAR E
Sbjct: 487 IVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAE 546

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD-TFYDRAAFSLMCCYMGDGMDR 440
           A +LM VQ  + +P+ GE ++ + QD ++ ++L+T  +  F +  A  L+         R
Sbjct: 547 ARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTHDNPEFVETQALDLLRAT------R 600

Query: 441 VD-LPTPAILKP--VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
           VD LP PA         WTG+Q+FS L+    NM            +++K+  T      
Sbjct: 601 VDTLPEPAGENEDGQSYWTGQQIFSELLPDDLNME-----------FTSKVGDT------ 643

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
                      V   + +L  G + +  +G    + +   L +DY    +   +N +A L
Sbjct: 644 -----------VTIEDGQLTQGTIDEDAVGAFGGE-IVDALAKDYSKTRSRIFINEIASL 691

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
           + R I + G SIGIDD     E + +  + I   Y+     I+ Y  G+L+  PG    +
Sbjct: 692 AMRAIMHFGLSIGIDDESIPDEATAQVDEAIDAAYDKIQELIEIYEAGELESLPGRSVDE 751

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           TLE  I   L + R+ AG+         N  ++MS+ G++ S +N++QM  CVGQQ+V G
Sbjct: 752 TLEMKIMQRLGKARDSAGEIAEDHFEEDNPAVVMSKSGARASMLNLTQMAGCVGQQAVRG 811

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            R   G+  R+L H+ +      A GFV NS+ +GL+  EFFFH MGGREGLVDTAV+T+
Sbjct: 812 ERINRGYEGRTLSHYQKGDLSAEAHGFVENSYRAGLTPREFFFHAMGGREGLVDTAVRTS 871

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL- 796
            +GY+ RRLI AL +L  QYD SVR+  G IVQF +G+DG  P  +      P++ + + 
Sbjct: 872 KSGYLQRRLINALSELEAQYDGSVRDTSGTIVQFEFGEDGTSPVKVSSDDETPIDVENIA 931

Query: 797 --LMKVKATCPPAGQRYLS----PQQVSEIVEKQLAA 827
             ++  + +     +R+L     P  +SE  E ++ A
Sbjct: 932 DRILTSEFSSAEEKERFLGEREPPTNLSEHAEPRVDA 968


>gi|397135940|gb|AFO11465.1| RNA polymerase I, partial [Spencermartinsiella europaea]
          Length = 868

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 293/725 (40%), Positives = 430/725 (59%), Gaps = 44/725 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  +L + K ++  D   L LSE   RPE L+IT + VPP  +RPS+ ++ +   E+
Sbjct: 14  LLTPTEILNVLKHISPQDTHRLGLSEDYARPEWLVITVLPVPPPPVRPSIAINETARGED 73

Query: 142 DITERLKRIIQTNASLQ---QELVEAN--SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  I++ N++++   QE   A+  + F++L     LQ  VA Y+++D+ G P ++
Sbjct: 74  DLTYKLADILKANSNVERCEQEGAPAHVINEFEAL-----LQYHVATYMDNDIAGQPRAL 128

Query: 197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + +V +P  +AR LT
Sbjct: 129 QKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPKSIARTLT 188

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
           YPE V+ +NI++L + ++NGP+++PGA+ I   D   R+     +    + L+ G  V+R
Sbjct: 189 YPEIVTPYNIQRLTELVRNGPNEHPGAKYI-IRDTGERIDLRYHKRAGDIALQYGWKVER 247

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           H+ D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+
Sbjct: 248 HIVDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 307

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
           EE R E   +  V   + +P++ + ++   QD L     +T++DTF D      +  ++ 
Sbjct: 308 EETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTKRDTFIDYEQVMNILLWI- 366

Query: 436 DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
            G D V +P PAILKP  +WTGKQ+              V++T+    +   L R +   
Sbjct: 367 PGWDGV-VPQPAILKPRPMWTGKQM--------------VSMTIPSGIF---LQRFDDGN 408

Query: 496 EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
            I      P D  +  +  E+I G + K T+G     GL   ++R+ G    +G    + 
Sbjct: 409 PIS----SPKDNGMLIQKGEIIYGVVDKKTVG-ATGGGLIHTIMREKGPKVCAGFFGNIQ 463

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           K+   W+ ++GFSIGI D              ISE  +     I E    KL  +PG   
Sbjct: 464 KVVNYWLLHNGFSIGIGDTIADGATMRDIANTISEAKQKVQEIILEAQSNKLSPEPGMTL 523

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            ++ E  ++ +LN+ R++AG++   SL   N+   M   GSKGS INIS M ACVGQQ V
Sbjct: 524 RESFEHNVSRVLNQARDNAGRSAEMSLKELNNVKQMVVAGSKGSFINISLMSACVGQQIV 583

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R P GF DRSLPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DTAVK
Sbjct: 584 EGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVK 643

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS-----GEP 790
           TA+TGY+ RRL+KALED+ +QYD + RN+ G ++QF+YG+DG+D   +E ++     G  
Sbjct: 644 TAETGYIQRRLVKALEDIMVQYDGTTRNSLGDVIQFVYGEDGLDGTQVEKQTVDTIPGSH 703

Query: 791 LNFDR 795
             FDR
Sbjct: 704 DAFDR 708


>gi|313127540|ref|YP_004037810.1| DNA-directed RNA polymerase subunit a' [Halogeometricum borinquense
           DSM 11551]
 gi|448285311|ref|ZP_21476555.1| DNA-directed RNA polymerase subunit A' [Halogeometricum borinquense
           DSM 11551]
 gi|312293905|gb|ADQ68365.1| DNA-directed RNA polymerase, subunit A' [Halogeometricum
           borinquense DSM 11551]
 gi|445576881|gb|ELY31328.1| DNA-directed RNA polymerase subunit A' [Halogeometricum borinquense
           DSM 11551]
          Length = 976

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 276/722 (38%), Positives = 410/722 (56%), Gaps = 41/722 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++   F+ + D D   L +     RPE +I+T + VPP+  RPS+ +D  Q +E+D
Sbjct: 245 LMPSDIRDWFEDIPDEDIVTLGIDPSRARPEWMILTVLPVPPVTARPSITLDNGQRSEDD 304

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N    +              WE LQ  V  +I++++ G P +  +  RP
Sbjct: 305 LTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFIDNEISGTPPARHRSGRP 364

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+AR +T    V+
Sbjct: 365 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPERVAREMTQTMNVT 424

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
           + N+E+ +Q ++NGP+ +PGA  ++ PDG    +  K   +LA ++++G  V+RHL DGD
Sbjct: 425 ERNLEQAQQYVRNGPEGHPGANYVKRPDGRRLKVTEKNCEELAEKVQAGWEVNRHLIDGD 484

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +V+FNRQPSLHRMSIM H   +MP++T R N  VC PYNADFDGDEMNMH  QTEEAR E
Sbjct: 485 IVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQTEEARAE 544

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDT-FYDRAAFSLMCCYMGDGMDR 440
           A +LM VQ  + +P+ G+ ++ + QD ++ ++L+T  +  F +  A  L+     D    
Sbjct: 545 ARVLMRVQEQILSPRFGQNIIGAIQDHISGTYLLTNGNPHFTETQALDLLRATSID---- 600

Query: 441 VDLPTPAILKP--VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
             LP PA  +      WTG+QLFS L+    N+                   + GD+   
Sbjct: 601 -TLPEPAGEEEDGQPYWTGRQLFSELLPDDLNL---------------SFTSSTGDD--- 641

Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
                     V   + +LI G + +  +G    + +   L + Y    +   +N +A L+
Sbjct: 642 ----------VIIEDGQLIEGTIDEDAVGAFGGE-VVDTLAKVYSKTRSRVFINEVASLA 690

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
            R I + GFSIGIDD    +E  ++  + I   YE     I+ Y  G+L+  PG    +T
Sbjct: 691 MRAIMHFGFSIGIDDESIPQEAGEQVDEAIDSAYERVEELIEIYEAGELESLPGRTVDET 750

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
           LE  I   L + R+ AG+         N  ++M++ G++GS +N++QM  CVGQQ+V G 
Sbjct: 751 LEMKIMQQLGKARDSAGEIADDHFTDDNPAVVMARSGARGSMLNLTQMAGCVGQQAVRGE 810

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R   G+  R+L H+ ++     A GFV NS+  GL+  EFFFH MGGREGLVDTAV+T+ 
Sbjct: 811 RINRGYEGRTLSHYQKEDLSAEAHGFVENSYRGGLTPREFFFHAMGGREGLVDTAVRTSK 870

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
           +GY+ RRLI AL +L  QYD +VR+  G IVQF +G+DG  P  +    G+ ++ + +  
Sbjct: 871 SGYLQRRLINALSELEAQYDGTVRDTSGTIVQFEFGEDGTSPVKVSSGEGDGIDVENITD 930

Query: 799 KV 800
           +V
Sbjct: 931 RV 932


>gi|226295248|gb|EEH50668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
           brasiliensis Pb18]
          Length = 1746

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 300/718 (41%), Positives = 417/718 (58%), Gaps = 46/718 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QSN 139
           + P   L +F+ +++ D  ++ LS    RPE +IIT + VPP  +RPSV++ GS   Q  
Sbjct: 216 ITPQMALNIFRNISEEDVRLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGSGQRG 275

Query: 140 ENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVPF 194
           E+D+T +L  I++ N ++ +   E +       F+SL     LQ  VA Y+++D+ G P 
Sbjct: 276 EDDLTYKLAEIVRANQNVTRCEQEGSPEHVVREFESL-----LQYHVATYMDNDIAGQPQ 330

Query: 195 SMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           +MQ + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +PI +A+ 
Sbjct: 331 AMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQT 390

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY----GKFRNQLAVELKS 309
           LTYPE V+  NI KL + + NGPD +PGAR +    G    L     G  RN L    + 
Sbjct: 391 LTYPEVVTPFNIAKLGELVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFL----QY 446

Query: 310 GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMN 369
           G  V+RH+ DGDV+LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMN
Sbjct: 447 GWRVERHIVDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMN 506

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +HVPQ+EEAR E   L  V   + +P+    L+   QD L   + I R+D F  +     
Sbjct: 507 LHVPQSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMN 566

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           +  ++ D  D V +P PAILKP   WTGKQL S+++ P  N                 L+
Sbjct: 567 ILLWVPD-WDGV-IPQPAILKPRPRWTGKQLISMVLPPGLN-----------------LL 607

Query: 490 RTEGDEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
           R + D   R E   P  DG V     EL+ G   K T+G     G+   +  +YG     
Sbjct: 608 RVDRDRAPRSEKFSPPADGGVLVHGGELMYGMFSKKTVG-ATGGGIIHTIFNEYGPETAM 666

Query: 549 GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
              N    +   W+ +HGFSIGI D  P      K    +    E  +       +  L+
Sbjct: 667 NFFNGAQTVVNYWLLHHGFSIGIGDTIPDLPTIQKIENAVRVRKEEVDDITASATDNTLE 726

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
             PG +  +T E+ ++  LN  R++AG     S    N+ + M++ GSKGS INISQM A
Sbjct: 727 PLPGMNVRETFESKVSRALNNARDEAGTETEKSFKDLNNAVQMARSGSKGSIINISQMTA 786

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            VGQQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREG
Sbjct: 787 VVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREG 846

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           L+DTAVKTA+TGY+ R+L+KALE++ ++YD +VRN+ G +VQFLYG+DG+D A++E +
Sbjct: 847 LIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVVQFLYGEDGLDGAHIENQ 904



 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 121/400 (30%), Positives = 198/400 (49%), Gaps = 50/400 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+       G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A  
Sbjct: 1074 NRFSRAMANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATH 1133

Query: 955  ISTPIITAELECND--NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T   + +   ++ +A+ ++  +E T L  V ++ +I     + S VI  D + +
Sbjct: 1134 IKTPSMTVYQDSSRAMDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTVIEADRDMV 1193

Query: 1013 QDAHLCINADIVKES----------IVQTPKIKLKQQHIKVLDFRKLEIFPP-------- 1054
            + ++  I  D+  +S          I+  PK+  K   ++ +  R  + +P         
Sbjct: 1194 E-SYFIIPEDVADDSSRQSKWLLRIILSRPKLLDKNLTVQDVAMRIKDAYPQDIAVIFSD 1252

Query: 1055 --VDKSKIHFEL----------------YSLK----NVLPMVIVKGIKTVERVVIAEKEK 1092
               D+  I                     +LK    ++L  + ++G+  +ER  I EK +
Sbjct: 1253 NNADEQVIRIRQIQDTKQDDDDDDTEYDVTLKKLEGHLLDTLTLRGVAGIERAFINEKSR 1312

Query: 1093 ----EKRKVKENGEK---KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
                E   + ++ E    K++ L   G+ L  V+   G+D  +T SN   E+ +  GIEA
Sbjct: 1313 VRVLEDGSLHQSSEDPLCKEWVLETSGSALGEVLTIPGVDTTRTYSNQFVEILEVFGIEA 1372

Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
             R  ++ E+ + +   G  ++ RH+ LL D+MT RG ++ +TR GI + D   LM  SFE
Sbjct: 1373 TRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRCSFE 1432

Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            +T + L +A+     D   GVSE +I+G   P GTG   +
Sbjct: 1433 ETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDV 1472


>gi|120561223|gb|ABM26997.1| RNA polymerase II largest subunit, partial [Gigaspora gigantea]
          Length = 1039

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 295/763 (38%), Positives = 426/763 (55%), Gaps = 27/763 (3%)

Query: 40  GMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMT 99
           G+V+K     G  H +  + +   +        K+S          L P +V  + K+++
Sbjct: 100 GLVRKKKPHGGCGHKQPTIRKEGLKLYVNYKSNKDSDEQSQDTRKPLTPADVYQILKKIS 159

Query: 100 DTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNAS 156
             D + + L+    RP+ +IIT + VPP  +RPS+ MDG+   E+D+T +L  I++ N +
Sbjct: 160 PPDLKDMGLNGEFARPDWMIITILPVPPPPVRPSIQMDGTSRGEDDLTHKLADILKANQN 219

Query: 157 LQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFVQRLKGKQGR 215
           +++   E + A         LQ   A Y+++++ G P ++Q + RPL     RLKGK+GR
Sbjct: 220 VKRYEAEGHPAHVVNEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGR 279

Query: 216 FRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNG 275
            RGNL GKRV+++ RTVI+ DPN+ + +V +P  +A+ LT+PE V+  NI+ L+  ++NG
Sbjct: 280 LRGNLMGKRVDFSARTVITGDPNISVDQVGVPKSIAQNLTFPELVTPFNIDLLQGLVENG 339

Query: 276 PDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMS 335
           P  +PGA+ +    G    L         V L+ G  V+RHL DGD+++FNRQPSLH+MS
Sbjct: 340 PSVHPGAKYVIRDTGERIDLKHTSGMSGGVRLQLGWKVERHLNDGDIIIFNRQPSLHKMS 399

Query: 336 IMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTP 395
           +M HR R+MP+ T R N SV  PYNADFDGDEMNMHVPQ+ E + E   +  V   + +P
Sbjct: 400 MMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQSVETKAEISEICMVPKQVVSP 459

Query: 396 KNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELW 455
           ++ + ++   QD L +    T++D F  +     +  ++ D   R  LP P ILKP+ LW
Sbjct: 460 QSNKPVMGIVQDTLCAVRKFTKRDCFLTKDLVMNILMWVLDWDGR--LPIPCILKPIPLW 517

Query: 456 TGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSE 515
           TGKQ+ S++I                K  ++  +R  G  E     + P D  V   + E
Sbjct: 518 TGKQILSMII---------------PKGINSDNLRHSGHPENEHSDISPGDTKVLIEDGE 562

Query: 516 LISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQ 575
           L+ G + K T+G     GL  V++ + G       +N    +  +W+  +GFSIGI D  
Sbjct: 563 LLCGIVCKKTVG-ATHQGLVHVIMNEMGPEKAKDFLNGCQAVVNQWLLQNGFSIGIGDTI 621

Query: 576 PKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAG 635
              E        IS         I E  + KL+  PG    +T E  +   LN  R+ AG
Sbjct: 622 ADDETMKNITNTISNAKSRVAEIIGEAQQDKLECAPGMTIRETFEHKVNKELNTARDAAG 681

Query: 636 KACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRK 695
           K+   SL   N+   M   GSKGS INISQM ACVGQQ+V G+R P GF  R+LPHF + 
Sbjct: 682 KSAEQSLKEENNVKQMVIAGSKGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKD 741

Query: 696 AKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI 755
              P ++GFV N +  GL+  EFFFH MGGREGL+DTAVKTA+TGY+ RRL+KALED+ +
Sbjct: 742 DHSPESRGFVENCYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMV 801

Query: 756 QYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
           +YD +VRN+ G IVQF YG+DGMD   +     EP  FD L M
Sbjct: 802 KYDGTVRNSLGDIVQFCYGEDGMDACFV-----EPQTFDTLPM 839


>gi|324120556|dbj|BAJ78669.1| RNA polymerase II largest subunit [Thrips palmi]
          Length = 1708

 Score =  501 bits (1290), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/699 (40%), Positives = 422/699 (60%), Gaps = 34/699 (4%)

Query: 91  VLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           V  + K +TD +C +L +     RP+ +I+T + VPP+ +RP+V+M GS  N++D+T +L
Sbjct: 195 VWEILKHITDEECFILGMDPKFARPDWMIVTCLPVPPLCVRPAVVMYGSARNQDDLTHKL 254

Query: 148 KRIIQTNASLQQELVEANSAFKSLA-GWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGF 205
             I++ N  L +   +A +A   LA   + LQ  VA  +++D+ G+P +MQ + +PL   
Sbjct: 255 SDILKANNELLRN-EQAGAATHVLAENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAI 313

Query: 206 VQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNI 265
             RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ LT+PE V+  NI
Sbjct: 314 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNI 373

Query: 266 EKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLEDGDVVL 324
           +K+++ ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RH+ DGD+V+
Sbjct: 374 DKMQELVRRGNSQYPGAKYIVRDNGERIDL--RFHPKTSDLHLQCGYKVERHIRDGDLVI 431

Query: 325 FNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALL 384
           FNRQP+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R E   
Sbjct: 432 FNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN 491

Query: 385 LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVD 442
           +      + TP+  + ++   QD LT+   +T++D F ++      LM   + DG     
Sbjct: 492 IHVTPRQIITPQANQPVMGIVQDTLTAVRKMTKRDVFLEKEQMMTLLMFLPIWDG----K 547

Query: 443 LPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR--IE 500
           +P P ILKP  LWTGKQLFS++I  + N+          +T+S     T  DEE     +
Sbjct: 548 MPQPCILKPKPLWTGKQLFSLIIPGNVNLI---------RTHS-----THPDEEDDGPYK 593

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
            + P D  V   + EL+ G L K TLG  +   L  V+  + G          +  +   
Sbjct: 594 WISPGDTKVMVEHGELVKGILCKKTLGT-SPGSLLHVIFLELGHEVCGQFYGNIQTVVNN 652

Query: 561 WIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
           W+   G SIGI D +  ++  S+ +  +     +V  V  K +N  +L+  PG    QT 
Sbjct: 653 WLLLEGHSIGIGDTIADRQTYSEIQNAIKKAKADVIEVIQKAHNM-ELEPTPGNTLRQTF 711

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R
Sbjct: 712 ENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKR 771

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GF  R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKTA+T
Sbjct: 772 IPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAET 831

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
           GY+ RRLIKA+E + + YD +VRN+ G ++Q  YG+DG+
Sbjct: 832 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGL 870



 Score =  177 bits (450), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 134/421 (31%), Positives = 204/421 (48%), Gaps = 63/421 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R++  +   G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1034 LSSEAFEWLIGEIETRFQQAQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1093

Query: 941  GVPRIKEIINGAKRISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            GVPR+KEIIN +K+   P +T  L      D E A  V+  R+E T L +V  +  I   
Sbjct: 1094 GVPRLKEIINISKKPKAPSLTVFLSGVAARDAEKAKNVL-CRLEHTTLRKVTANTAIYYD 1152

Query: 998  SRLASIVIA----------------------------LDMETIQDAHL------------ 1017
                + VI+                            LD + + D  L            
Sbjct: 1153 PDPQNTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAG 1212

Query: 1018 ------CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NV 1070
                  CI  D   E +V   +I +     K  D  +      VDK +    L  ++ N+
Sbjct: 1213 FGEDLNCIFNDDNAEKLVLRIRI-MNSDDSKFQDEEE-----QVDKMEDDMFLRCIEANM 1266

Query: 1071 LPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGI 1124
            L  + ++GI+ + +V +   + + +K   + E GE K   ++ L  +GT L  V+    +
Sbjct: 1267 LSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDV 1326

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
            D  +T SN I E+ Q LGIEA R  +  E+N  +  +G+ ++ RH+ LL D+MT +G ++
Sbjct: 1327 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLM 1386

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
             ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    +GTG   
Sbjct: 1387 AITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFD 1446

Query: 1245 I 1245
            +
Sbjct: 1447 L 1447


>gi|119643869|gb|ABL85591.1| RNA polymerase II largest subunit [Degelia plumbea]
          Length = 1002

 Score =  501 bits (1290), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 286/708 (40%), Positives = 417/708 (58%), Gaps = 34/708 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS--NE 140
           + P   L +F+ ++  + + + LS    RPE +IIT + VPP  +RPS+ +DG      E
Sbjct: 135 ITPQMALNIFRHISTEEIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGMRGE 194

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA- 199
           +D+T +L  II+ N ++++   E + A   +   + LQ  VA Y+++D+ G P ++Q + 
Sbjct: 195 DDLTYKLGDIIRANGNVRRCETEGSPAHVVMEFEQLLQFHVATYMDNDIAGQPQALQKSG 254

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYPE 
Sbjct: 255 RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPET 314

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI+KL Q ++NGP+++PGA+ +    G  R+     +    + L+ G  V+RH+ D
Sbjct: 315 VTPYNIQKLHQLVKNGPNEHPGAKYVIRESG-ERIDLRHHKRAGEISLQYGWKVERHIID 373

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R
Sbjct: 374 GDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 433

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V  N+ +P+    L+   QD L   + + R+D F  +     +  ++ D  D
Sbjct: 434 AEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKLCRRDVFLSKEQVMNILLWIPD-WD 492

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
            + LP PAILKP   WTGKQ+ S++I    N                 L R  G      
Sbjct: 493 GI-LPQPAILKPRPKWTGKQIISLVIPSGLN-----------------LTRAGG------ 528

Query: 500 ETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
           E   P ND  +     +L+ G L K ++G     G+  ++  + G        N    + 
Sbjct: 529 EGFSPLNDDGLLVSGGKLMYGLLSKKSVG-ATSSGIIHIIFNEKGPEVAMKFFNGAQTVV 587

Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
             W+ ++GFSIGI D  P +    +    +++  E   V  +     +L+  PG +  +T
Sbjct: 588 NYWLLHNGFSIGIGDTIPDRGTIKQIKDAVNKQKEDVAVITQSATANELEPLPGMNVRET 647

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            E+ ++  LN+ R+DAG     SL   N+   M+  GSKGS INISQM A VGQQSV G+
Sbjct: 648 FESKVSKALNKARDDAGTVTEKSLKDLNNATQMALSGSKGSTINISQMTAVVGQQSVEGK 707

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+
Sbjct: 708 RIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 767

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           TGY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D  ++E +
Sbjct: 768 TGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDAVHIESQ 815


>gi|448476273|ref|ZP_21603437.1| DNA-directed RNA polymerase subunit A' [Halorubrum aidingense JCM
           13560]
 gi|445815822|gb|EMA65741.1| DNA-directed RNA polymerase subunit A' [Halorubrum aidingense JCM
           13560]
          Length = 970

 Score =  501 bits (1290), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 276/720 (38%), Positives = 402/720 (55%), Gaps = 37/720 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++   F+ + D D EVL +     RPE +I+T + VPP+  RPS+ +D  Q +E+D
Sbjct: 239 LMPSDIRDWFEDIPDEDLEVLGIDSQDSRPEWMILTVLPVPPVTTRPSITLDNGQRSEDD 298

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N    +              WE LQ  V  ++++++ G P +  +  RP
Sbjct: 299 LTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFVDNEISGTPPARHRSGRP 358

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+A  +T    V+
Sbjct: 359 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVATEMTQTLNVT 418

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
           + N+E+ RQ ++NGP+ +PGA  +R PDG    +  K   +LA ++++   V+RHL DGD
Sbjct: 419 ERNVEEARQYVRNGPEAHPGANYVRRPDGRRLKVTEKNCEELAEKVEADWEVNRHLVDGD 478

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +V+FNRQPSLHRMSIM H   +MP++T R N  VC PYNADFDGDEMNMH  Q EEAR E
Sbjct: 479 IVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAE 538

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD-TFYDRAAFSLMCCYMGDGMDR 440
           A +LM VQ  + +P+ G  ++ + QD ++ ++L+T  +  F +  A  L+     D +  
Sbjct: 539 ARVLMRVQEQILSPRFGGNIIGAIQDHISGTYLLTHSNPQFTETQALDLLRATRVDELPE 598

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
            D          E WTG+ LFS L+                   S     + GD+     
Sbjct: 599 AD---GVDDDGREYWTGQTLFSELL---------------PDDLSLHFSSSTGDD----- 635

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
                   V   N +L+ G + +  +G    + +   L ++YG   +   +N +A L+ R
Sbjct: 636 --------VVIENGQLVEGTIDEDAVGAFGGE-VVDTLTKEYGETRSRIFINEIASLAMR 686

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
            I + GFSIGIDD     E  ++    I   YE     I  Y  G+L+  PG    +TLE
Sbjct: 687 AIMHFGFSIGIDDESIPPEAEEQVDDAIESAYERVQELIATYEAGELESLPGRGVDETLE 746

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
             I   L + R+ AG+         N  ++M++ G++GS +N++QM   VGQQ+V G R 
Sbjct: 747 MKIMQTLGKARDSAGEIADQHFGDDNPAVVMARSGARGSMLNLTQMAGSVGQQAVRGERI 806

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
             G+ DR+L H+        A GFV NS+  GL+  EFFFH MGGREGLVDTAV+T+ +G
Sbjct: 807 NRGYEDRTLSHYRANDLSAEAHGFVENSYRGGLTPEEFFFHAMGGREGLVDTAVRTSKSG 866

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
           Y+ RRLI AL +L  QYD SVR+  G IVQF +G+DG  P  +    G+ ++ D ++ +V
Sbjct: 867 YLQRRLINALSELEAQYDGSVRDTSGRIVQFEFGEDGTSPVKVSSGEGDGIDVDGIVDRV 926


>gi|324120532|dbj|BAJ78657.1| RNA polymerase II largest subunit [Galloisiana yuasai]
          Length = 1904

 Score =  501 bits (1290), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 289/747 (38%), Positives = 434/747 (58%), Gaps = 29/747 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           V  + K +TD +C +L +     RP+ +IIT + VPP+ +RP+V+M GS  N++D+T +L
Sbjct: 215 VWEILKHITDEECFILGMDHKFARPDWMIITVLPVPPLCVRPAVVMYGSARNQDDLTHKL 274

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II++N  L +      +A       + LQ  VA  I++D+ G+P +MQ + +PL    
Sbjct: 275 ADIIKSNNELVRNEQAGAAAHVISENIKMLQFHVATLIDNDMPGLPRAMQKSGKPLKAIK 334

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ +T+PE V+  NI+
Sbjct: 335 ARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNID 394

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           K+++ ++ G  +YPGA+ I   +G  R+          + L+ G  V+RH+ DGD+V+FN
Sbjct: 395 KMQELVRRGNSQYPGAKYIVRDNG-ERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFN 453

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQP+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R E   + 
Sbjct: 454 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 513

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLP 444
                + TP+  + ++   QD LT+   +T++D F ++      LM   + DG     +P
Sbjct: 514 VTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNILMFLPIWDG----KMP 569

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR--IETM 502
            P+I+KP  LWTGKQ+FS++I  + NM          +T+S     T  DEE     + +
Sbjct: 570 QPSIMKPKPLWTGKQVFSLIIPGNVNMI---------RTHS-----THPDEEDDGPYKWI 615

Query: 503 CPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWI 562
            P D  V   + EL+ G L K TLG  +   L  + + + G          +  +   W+
Sbjct: 616 SPGDTKVMVEHGELVMGILCKKTLGT-SAGSLLHICMLELGHEVCGQFYGNIQTVINTWL 674

Query: 563 GNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAV 622
              G SIGI D     +   +  K I +  E     I++ +  +L+  PG    QT E  
Sbjct: 675 LLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQ 734

Query: 623 ITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPN 682
           +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P 
Sbjct: 735 VNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPF 794

Query: 683 GFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYM 742
           GF  R+LPHF +    P ++GFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA+TGY+
Sbjct: 795 GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYI 854

Query: 743 SRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA 802
            RRLIKA+E + + YD +VRN+ G ++Q  YG+DG+    +E ++   +       + K 
Sbjct: 855 QRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKSFEKKF 914

Query: 803 TCPPAGQRYLSPQQVSEIVEKQLAAYG 829
              P  +RYL  +  +E + K+L   G
Sbjct: 915 KFEPTNERYLR-RVFNEEILKELMGSG 940



 Score =  179 bits (454), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 135/421 (32%), Positives = 205/421 (48%), Gaps = 63/421 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R++  +V  G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1054 LSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1113

Query: 941  GVPRIKEIINGAKRISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            GVPR+KEIIN +K+   P +T  L      D E A  V+  R+E T L +V  +  I   
Sbjct: 1114 GVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL-CRLEHTTLRKVTANTAIYYD 1172

Query: 998  SRLASIVIA----------------------------LDMETIQDAHL------------ 1017
                + VI+                            LD + + D  L            
Sbjct: 1173 PDPQNTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAG 1232

Query: 1018 ------CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NV 1070
                  CI  D   E +V   +I +     K  D  +      VDK +    L  ++ N+
Sbjct: 1233 FGDDLNCIFNDDNAEKLVLRIRI-MNSDENKFQDEEET-----VDKMEDDMFLRCIEANM 1286

Query: 1071 LPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGI 1124
            L  + ++GI+ + +V +   + + +K   V E GE K   ++ L  +GT +  V+    +
Sbjct: 1287 LSDMTLQGIEAIGKVYMHLPQTDSKKRIVVTETGEFKAIAEWLLETDGTSMMKVLSERDV 1346

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
            D  +T SN I E+   LGIEA R  +  E+N  ++ +G+ ++ RH+ LL D+MT +G ++
Sbjct: 1347 DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1406

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
             ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    LGTG   
Sbjct: 1407 AITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGCFD 1466

Query: 1245 I 1245
            +
Sbjct: 1467 L 1467


>gi|113707382|gb|ABI36590.1| RNA polymerase II largest subunit [Teloschistes exilis]
          Length = 1003

 Score =  501 bits (1290), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 286/711 (40%), Positives = 423/711 (59%), Gaps = 46/711 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS--NE 140
           + P   L +F+ ++  D + + LS    RPE +IIT + VPP  +RPS+ MDG+     E
Sbjct: 124 ITPQMALSVFRNISTDDIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISMDGANGLRGE 183

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA- 199
           +D+T +L  II+ N ++++  ++ +    +      LQ  VA Y+++++ G+  ++Q + 
Sbjct: 184 DDLTYKLGDIIRANGNVKRCDLDGSPQHLTQEFENLLQFHVATYMDNNIAGLGQALQKSG 243

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +A+ LTYPE 
Sbjct: 244 RPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPET 303

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI+KL Q ++NGP+++PGA+ +   D   R+     +    + L+ G  V+RH+ D
Sbjct: 304 VTPYNIQKLHQLVKNGPNEHPGAKYV-IRDSGERIDLRHHKRAGEISLQYGWKVERHIVD 362

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD ++FNRQPS H+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R
Sbjct: 363 GDFIIFNRQPSXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 422

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYM--GDG 437
            E   L  V  N+ +P+    L+   QD L   + I R+D F ++     +  ++   DG
Sbjct: 423 AEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLNQEQVMNILLWVPEWDG 482

Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
           +    +P PA+LKP  LWTGKQ+ S++I    N+       VK   Y+            
Sbjct: 483 I----IPQPAVLKPTPLWTGKQIVSLVIPAGLNL-------VKGSDYAP----------- 520

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
                  +DG ++  + EL+ G L K  +G     G+  ++  + G  A     N    +
Sbjct: 521 -----LKDDG-IFVSSGELMFGLLNKKVVGAA-MGGIIHIVYNEKGPEAAMNFFNGAQAV 573

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYN----EGKLQLKPGC 613
              W+ ++GFSIGI D  P +E      +LI E       ++ E      E +L   PG 
Sbjct: 574 VNYWLLHNGFSIGIGDTIPDRETI----RLIEEAVNAQKREVAEITQMATESRLDTLPGM 629

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
           +  +T E+ ++  LN+ R+DAG     SL   N+   M++ GSKGS INISQM A VGQQ
Sbjct: 630 NVRETFESRVSKALNKARDDAGTVTEDSLKDLNNATQMARSGSKGSTINISQMTAVVGQQ 689

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
           SV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTA
Sbjct: 690 SVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTA 749

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           VKTA+TGY+ RRL+KALED+  +YD ++RN+ G IVQF+YG+DG+D A++E
Sbjct: 750 VKTAETGYIQRRLVKALEDVMAKYDGTIRNSLGDIVQFVYGEDGLDGAHIE 800


>gi|113707380|gb|ABI36589.1| RNA polymerase II largest subunit [Flavoparmelia caperata]
          Length = 1008

 Score =  501 bits (1290), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 285/706 (40%), Positives = 421/706 (59%), Gaps = 34/706 (4%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQS--NE 140
           + P   L +F+ ++  D + + LS    RPE +IIT + VPP  +RPS+ +DG      E
Sbjct: 127 ITPQMALNIFRHISTEDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRGE 186

Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA- 199
           +D+T +L  II+ N ++++   E + A       + LQ  VA Y+++D+ G P ++Q + 
Sbjct: 187 DDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSG 246

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR LTYPE 
Sbjct: 247 RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPET 306

Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
           V+ +NI+KL Q ++NGP+++PGA+ +   D   R+     +    + L+ G  V+RH+ D
Sbjct: 307 VTPYNIQKLHQLVKNGPNEHPGAKYV-IRDTGERIDLRHHKRAGEISLQYGWKVERHIVD 365

Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
           GD ++FNR P  H+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R
Sbjct: 366 GDYIIFNRHPXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 425

Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
            E   L  V  N+ +P+    L+   QD L   + + R+D F  +     +  ++ D  D
Sbjct: 426 AEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLSKEQVMNILLWVPD-WD 484

Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
            V +P PAI+KP+ +WTGKQ+ S++I    N+     L V E+ +S              
Sbjct: 485 GV-IPQPAIVKPLAMWTGKQILSLIIPTGMNI-----LRVSEEGFSPL------------ 526

Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
                ND  +     EL+ G L K  +G  +  G+  ++  + G  A     N    +  
Sbjct: 527 -----NDDGLLISGGELMYGLLHKKIVG-ASGGGVIHIVFNEKGPEAAMSFFNGAQTVVN 580

Query: 560 RWIGNHGFSIGIDDVQPKKE-LSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
            W+ ++GFSIGI D  P +  +   +  + ++  EV  +  +   E +L+  PG +  +T
Sbjct: 581 YWLLHNGFSIGIGDTIPDRHTIQQIENAVNNQKAEVLEIP-RSATENELESLPGMNVRET 639

Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
            E+ ++  LN+ R+DAG     SL   N+   M++ GSKGS INISQM A VGQQSV G+
Sbjct: 640 FESKVSKALNKARDDAGAVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGK 699

Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
           R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL+DTAVKTA+
Sbjct: 700 RIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 759

Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
           TGY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D  ++E
Sbjct: 760 TGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIE 805


>gi|397135910|gb|AFO11450.1| RNA polymerase I, partial [Yamadazyma scolyti]
          Length = 863

 Score =  501 bits (1290), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 288/716 (40%), Positives = 426/716 (59%), Gaps = 49/716 (6%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L+P  +L +F+ ++  DC  L  +E   RPE ++IT + VPP  +RPS+  + +   E+
Sbjct: 12  LLSPSEILNVFRHISSEDCHKLGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGED 71

Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETL-QVEVAQYINSDVRGVPFSMQ-VA 199
           D+T +L  +++ N ++Q+  ++  S    +A +E L Q  VA Y+++D+ G P ++Q   
Sbjct: 72  DLTFKLADVLKANINVQRLELDG-SPQHVIAEFEALLQFHVATYMDNDIAGQPQALQKTG 130

Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
           RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +PI +AR L+YPE 
Sbjct: 131 RPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPISIARTLSYPEI 190

Query: 260 VSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
           V+  NI +L + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+RHL 
Sbjct: 191 VTPFNIHRLTEYVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIA--LQYGWKVERHLM 248

Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
           D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+ E 
Sbjct: 249 DDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPET 308

Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYMGD 436
           R E   +  V   + +P++ + ++   QD L     +T +D F  YD+    L      D
Sbjct: 309 RAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMLYWIPNWD 368

Query: 437 GMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANM-RVYVNLTVKEKTYSNKLIRTEGDE 495
           G+    +P PA+LKP  LWTGKQL S+ I    ++ R+  NL                  
Sbjct: 369 GV----IPPPAVLKPKPLWTGKQLLSMAIPKGIHIQRLESNL------------------ 406

Query: 496 EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
                 + PND  +   + E++ G + K T+G     GL   ++R+ G    +     + 
Sbjct: 407 ------LSPNDNGMLIVDGEIMFGVVDKKTVG-ATGGGLIHTVMREKGPQVCAQLFGNIQ 459

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEY----NEGKLQLKP 611
           K+   W+ ++GFSIGI D     E      K ++   E    K++E        KL+ +P
Sbjct: 460 KVVNFWLLHNGFSIGIGDTIADSETM----KTVTTTIEEAKTKVQEIILDAQRNKLEPEP 515

Query: 612 GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
           G    ++ E  ++ +LN+ R+ AG++   SL   N+   M   GSKGS INISQM ACVG
Sbjct: 516 GMTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVG 575

Query: 672 QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
           QQ V G+R P GF DR+LPHF +    P +KGF+ NS+  GL+  EFFFH M GREGL+D
Sbjct: 576 QQIVEGKRIPFGFSDRTLPHFTKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLID 635

Query: 732 TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           TAVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D   +E +S
Sbjct: 636 TAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGLDGTQVEKQS 691


>gi|397135884|gb|AFO11437.1| RNA polymerase I, partial [Candida multigemmis]
          Length = 872

 Score =  501 bits (1290), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 289/720 (40%), Positives = 424/720 (58%), Gaps = 36/720 (5%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L+P  +L + K ++  DC  L  SE   RPE ++IT + VPP  +RPS+  + +   E+D
Sbjct: 15  LSPSEILAVLKHISPEDCFKLGFSEDFARPEWMLITVLPVPPPPVRPSIAFNDTARGEDD 74

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VARP 201
           +T +L  +++ N ++Q+  ++ + A         LQ  VA Y+++D+ G P ++Q   RP
Sbjct: 75  LTFKLADVLKANINVQRLEMDGSPAHVISEFEALLQFHVATYMDNDIAGQPQALQKTGRP 134

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           +     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +AR L+YPE V+
Sbjct: 135 IKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEIVT 194

Query: 262 DHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
            HNI +L + ++NGP+++PGA+ +IR       + Y K    +A  L+ G  V+RHL D 
Sbjct: 195 PHNIHRLTEFVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVERHLMDD 252

Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
           D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+ E R+
Sbjct: 253 DPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRS 312

Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
           E   +  V   + +P++ + ++   QD L     +T +D F +      M  ++ D  D 
Sbjct: 313 ELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMSYWIPD-WDG 371

Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
           V +P PAI+KP  LW+GKQL S+ I    +++ +                   D+ + + 
Sbjct: 372 V-IPPPAIVKPKPLWSGKQLLSMAIPKGIHLQRF-------------------DDGVNL- 410

Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
            M P D  +   + E++ G + K T+G     GL   ++R+ G    +   +R+ K+   
Sbjct: 411 -MSPKDSGMLIVDGEIMFGVVDKKTVG-ATGGGLIHTVMREKGPQICAQLFSRIQKVVNF 468

Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
           W+ ++GFSIGI D              I E        I +     L+ +PG    ++ E
Sbjct: 469 WLLHNGFSIGIGDTIADSSTMKDVTTTIQEAKAKVQEIILDAQRNTLEPEPGMTLRESFE 528

Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
             ++ ILN+ R+ AG+    +L   N+   M   GSKGS INISQM ACVGQQ V G+R 
Sbjct: 529 HNVSRILNQARDTAGRTAEVNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRI 588

Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
           P GF DRSLPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DTAVKTA+TG
Sbjct: 589 PFGFSDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 648

Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS-----GEPLNFDR 795
           Y+ RRL+KALED+ + YD + RN+ G I+QF+YG+DG+D   +E +S     G  LNF+R
Sbjct: 649 YIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSDLNFER 708


>gi|292654527|ref|YP_003534424.1| DNA-directed RNA polymerase subunit A [Haloferax volcanii DS2]
 gi|291371230|gb|ADE03457.1| DNA-directed RNA polymerase subunit A [Haloferax volcanii DS2]
          Length = 976

 Score =  501 bits (1290), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 286/758 (37%), Positives = 421/758 (55%), Gaps = 52/758 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++   F+ + D D   L +     RPE +I+T + VPP+  RPS+ +D  Q +E+D
Sbjct: 247 LMPSDIRDWFEDVPDEDLVTLGIDPDRSRPEWMILTVLPVPPVTARPSITLDNGQRSEDD 306

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N    +              WE LQ  V  +I++++ G P +  +  RP
Sbjct: 307 LTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFIDNEISGTPPARHRSGRP 366

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+A  +T    V+
Sbjct: 367 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVASEMTQTMNVT 426

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
           + N+++ RQ ++NGP+ +PGA  +R PDG    +  K   +LA +++ G  V+RHL DGD
Sbjct: 427 ERNVDEARQYVRNGPESHPGANYVRRPDGRRLKVTEKNCEELAEKVELGWEVNRHLVDGD 486

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +V+FNRQPSLHRMSIM H   +MP++T R N  VC PYNADFDGDEMNMH  Q EEAR E
Sbjct: 487 IVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAE 546

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD-TFYDRAAFSLMCCYMGDGMDR 440
           A +LM VQ  + +P+ GE ++ + QD ++ ++L+T  +  F +  A  L+         R
Sbjct: 547 ARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTHDNPEFVETQALDLLRAT------R 600

Query: 441 VD-LPTPAILKP--VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
           VD LP PA         WTG+Q+FS L+    NM            +++K+  T      
Sbjct: 601 VDTLPEPAGENEGGQPYWTGQQIFSELLPDDLNME-----------FTSKVGDT------ 643

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
                      V   + +L+ G + +  +G    + +   L +DY    +   +N +A L
Sbjct: 644 -----------VSIEDGQLVQGTIDEDAVGAFGGE-IVDALAKDYSKTRSRIFINEIASL 691

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
           + R I + G SIGIDD     E + +  + I   Y+     I+ Y  G+L+  PG    +
Sbjct: 692 AMRAIMHFGLSIGIDDESIPDEATAQVDEAIDAAYDKIQELIEIYEAGELESLPGRSVDE 751

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           TLE  I   L + R+ AG+         N  ++MS+ G++ S +N++QM  CVGQQ+V G
Sbjct: 752 TLEMKIMQRLGKARDSAGEIAEDHFEEDNPAVVMSKSGARASMLNLTQMAGCVGQQAVRG 811

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            R   G+  R+L H+ +      A GFV NS+ +GL+  EFFFH MGGREGLVDTAV+T+
Sbjct: 812 ERINRGYEGRTLSHYQKGDLSAEAHGFVENSYRAGLTPREFFFHAMGGREGLVDTAVRTS 871

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF---- 793
            +GY+ RRLI AL +L  QYD SVR+  G IVQF +G+DG  P  +      P++     
Sbjct: 872 KSGYLQRRLINALSELEAQYDGSVRDTSGTIVQFEFGEDGTSPVKVSSDDETPIDVENIA 931

Query: 794 DRLLMKVKATCPPAGQRYLS----PQQVSEIVEKQLAA 827
           DR+L   + +     +R+L     P  +SE  E ++ A
Sbjct: 932 DRILTS-EFSSDEEKERFLGERAPPTNLSEHAEPRVDA 968


>gi|225677609|gb|EEH15893.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
           brasiliensis Pb03]
          Length = 2106

 Score =  501 bits (1290), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 300/718 (41%), Positives = 417/718 (58%), Gaps = 46/718 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QSN 139
           + P   L +F+ +++ D  ++ LS    RPE +IIT + VPP  +RPSV++ GS   Q  
Sbjct: 216 ITPQMALNIFRNISEEDVRLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGSGQRG 275

Query: 140 ENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVPF 194
           E+D+T +L  I++ N ++ +   E +       F+SL     LQ  VA Y+++D+ G P 
Sbjct: 276 EDDLTYKLAEIVRANQNVTRCEQEGSPEHVVREFESL-----LQYHVATYMDNDIAGQPQ 330

Query: 195 SMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           +MQ + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +PI +A+ 
Sbjct: 331 AMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQT 390

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY----GKFRNQLAVELKS 309
           LTYPE V+  NI KL + + NGPD +PGAR +    G    L     G  RN L    + 
Sbjct: 391 LTYPEVVTPFNIAKLGELVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFL----QY 446

Query: 310 GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMN 369
           G  V+RH+ DGDV+LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMN
Sbjct: 447 GWRVERHIVDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMN 506

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +HVPQ+EEAR E   L  V   + +P+    L+   QD L   + I R+D F  +     
Sbjct: 507 LHVPQSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMN 566

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           +  ++ D  D V +P PAILKP   WTGKQL S+++ P  N                 L+
Sbjct: 567 ILLWVPD-WDGV-IPQPAILKPRPRWTGKQLISMVLPPGLN-----------------LL 607

Query: 490 RTEGDEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
           R + D   R E   P  DG V     EL+ G   K T+G     G+   +  +YG     
Sbjct: 608 RVDRDRAPRSEKFSPPADGGVLVHGGELMYGMFSKKTVG-ATGGGIIHTIFNEYGPETAM 666

Query: 549 GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
              N    +   W+ +HGFSIGI D  P      K    +    E  +       +  L+
Sbjct: 667 NFFNGAQTVVNYWLLHHGFSIGIGDTIPDLPTIQKIENAVRVRKEEVDDITASATDNTLE 726

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
             PG +  +T E+ ++  LN  R++AG     S    N+ + M++ GSKGS INISQM A
Sbjct: 727 PLPGMNVRETFESKVSRALNNARDEAGTETEKSFKDLNNAVQMARSGSKGSIINISQMTA 786

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            VGQQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREG
Sbjct: 787 VVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREG 846

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           L+DTAVKTA+TGY+ R+L+KALE++ ++YD +VRN+ G +VQFLYG+DG+D A++E +
Sbjct: 847 LIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVVQFLYGEDGLDGAHIENQ 904



 Score =  182 bits (463), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 124/405 (30%), Positives = 200/405 (49%), Gaps = 53/405 (13%)

Query: 890  IQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII 949
            I+  FSR        G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+
Sbjct: 1072 IENRFSR---AMANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIL 1128

Query: 950  NGAKRISTPIITAELECND--NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIAL 1007
            N A  I TP +T   + +   ++ +A+ ++  +E T L  V ++ +I     + S VI  
Sbjct: 1129 NVATHIKTPSMTVYQDSSRAMDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTVIEA 1188

Query: 1008 DMETIQDAHLCINADIVKES----------IVQTPKIKLKQQHIKVLDFRKLEIFPP--- 1054
            D + ++ ++  I  D+  +S          I+  PK+  K   ++ +  R  + +P    
Sbjct: 1189 DRDMVE-SYFIIPEDVADDSSRQSKWLLRIILSRPKLLDKNLTVQDVAMRIKDAYPQDIA 1247

Query: 1055 -------VDKSKIHFEL----------------YSLK----NVLPMVIVKGIKTVERVVI 1087
                    D+  I                     +LK    ++L  + ++G+  +ER  I
Sbjct: 1248 VIFSDNNADEQVIRIRQIQDTKQDDDDDDTEYDVTLKKLEGHLLDTLTLRGVAGIERAFI 1307

Query: 1088 AEKEK----EKRKVKENGEK---KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQT 1140
             EK +    E   + ++ E    K++ L   G+ L  V+   G+D  +T SN   E+ + 
Sbjct: 1308 NEKSRVRVLEDGSLHQSSEDPLCKEWVLETSGSALGEVLTIPGVDTTRTYSNQFVEILEV 1367

Query: 1141 LGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLM 1200
             GIEA R  ++ E+ + +   G  ++ RH+ LL D+MT RG ++ +TR GI + D   LM
Sbjct: 1368 FGIEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALM 1427

Query: 1201 LASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
              SFE+T + L +A+     D   GVSE +I+G   P GTG   +
Sbjct: 1428 RCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDV 1472


>gi|123979328|gb|ABM81489.1| RNA polymerase II largest subunit [Ophioparma lapponica]
          Length = 981

 Score =  501 bits (1290), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 292/717 (40%), Positives = 426/717 (59%), Gaps = 51/717 (7%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QSN 139
           + P   L +F+ ++  + + + LS    RPE +IIT + VPP  +RPS+ +DG+      
Sbjct: 115 ITPQMALNIFRHISTEEIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGTGQGMRG 174

Query: 140 ENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVPF 194
           E+D+T +L  II+ N ++++   E + A     F+SL     LQ  VA Y+++D+ G P 
Sbjct: 175 EDDLTYKLGDIIRANGNVRRCETEGSPAHVVSEFESL-----LQFHVATYMDNDIAGQPQ 229

Query: 195 SMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           ++Q + RP+     RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + EV +P  +AR 
Sbjct: 230 ALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 289

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIV 313
           LTYPE V+ +NI KL Q ++ GP+ +PGA+ +   D   R+     +    + L+ G  V
Sbjct: 290 LTYPETVTPYNIHKLHQLVKTGPNDHPGAKYV-IRDSGERIDLRHHKRAGEISLQYGWKV 348

Query: 314 DRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVP 373
           +RH+ DGD ++FNRQPSLH+ S+M HR R+MP+ T R N SV +PYNADFDGDEMN+HVP
Sbjct: 349 ERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 408

Query: 374 QTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY--DRAAFSLMC 431
           Q+EE R E   L  V  N+ +P+    L+   QD L   + + R+D F   ++A   L+ 
Sbjct: 409 QSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGVYKMCRRDVFLTKEQAMNILLW 468

Query: 432 CYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRT 491
               DG+    +P PA LKP   WTGKQ+ S++I    N                 LIR 
Sbjct: 469 VPDWDGV----IPQPATLKPRPKWTGKQIISLVIPAGLN-----------------LIRP 507

Query: 492 EGDEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGC 550
                   E + P ND  ++    EL+ G   K ++G  +  G+  ++  + G  A    
Sbjct: 508 SS------EGLSPANDDGLFVHGGELMYGLFMKKSVG-ASGGGIVHIVFNEKGPDAAMKF 560

Query: 551 MNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK-KGKLISENYEVCNVKIKEYNEGKLQL 609
            N    L   W+ ++GFSIGI D  P +    K +  + ++  +V ++  +   E  L+ 
Sbjct: 561 FNGAQTLVNYWLLHNGFSIGIGDTIPDRNTIQKIENAVNTQKADVADI-TQSATENTLEA 619

Query: 610 KPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVAC 669
            PG +  +T E+ ++  LN+ R+DAG A   SL   N+ + M++ GSKGS INISQM A 
Sbjct: 620 LPGMNVRETFESKVSKALNKARDDAGTATEESLKDLNNAIQMARSGSKGSTINISQMTAV 679

Query: 670 VGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
           VGQQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREGL
Sbjct: 680 VGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGL 739

Query: 730 VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           +DTAVKTA+TGY+ RRL+KALED+  +YD +VRN+ G IVQF+YG+DG+D  ++E +
Sbjct: 740 IDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFIYGEDGLDGVHIEAQ 796


>gi|295664232|ref|XP_002792668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
           'lutzii' Pb01]
 gi|226278782|gb|EEH34348.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
           'lutzii' Pb01]
          Length = 1748

 Score =  501 bits (1289), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 300/718 (41%), Positives = 417/718 (58%), Gaps = 46/718 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGS---QSN 139
           + P   L +F+ +++ D  ++ LS    RPE +IIT + VPP  +RPSV++ GS   Q  
Sbjct: 222 ITPQMALNIFRNISEEDVRLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGSGQRG 281

Query: 140 ENDITERLKRIIQTNASLQQELVEANSA-----FKSLAGWETLQVEVAQYINSDVRGVPF 194
           E+D+T +L  I++ N ++ +   E +       F+SL     LQ  VA Y+++D+ G P 
Sbjct: 282 EDDLTYKLAEIVRANQNVTRCEQEGSPEHVVREFESL-----LQYHVATYMDNDIAGQPQ 336

Query: 195 SMQVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
           +MQ + RP+     RLKGK+GR R NL GKRV+++ RTVI+ DPNL + EV +PI +A+ 
Sbjct: 337 AMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQT 396

Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY----GKFRNQLAVELKS 309
           LTYPE V+  NI KL + + NGPD +PGAR +    G    L     G  RN L    + 
Sbjct: 397 LTYPEVVTPFNIAKLGELVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFL----QY 452

Query: 310 GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMN 369
           G  V+RH+ DGDV+LFNRQPSLH+ S+M HR R+MP+ T R N SV  PYNADFDGDEMN
Sbjct: 453 GWRVERHIVDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMN 512

Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
           +HVPQ+EEAR E   L  V   + +P+    L+   QD L   + I R+D F  +     
Sbjct: 513 LHVPQSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMN 572

Query: 430 MCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLI 489
           +  ++ D  D V +P PAILKP   WTGKQL S+++ P  N                 L+
Sbjct: 573 ILLWVPD-WDGV-IPQPAILKPRPRWTGKQLISMVLPPGLN-----------------LL 613

Query: 490 RTEGDEEIRIETMCP-NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATS 548
           R + D   R E   P  DG V     EL+ G   K T+G     G+   +  +YG     
Sbjct: 614 RVDRDRAPRSEKFSPPADGGVLVHGGELMYGMFSKKTVG-ATGGGIIHTIFNEYGPETAM 672

Query: 549 GCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
              N    +   W+ +HGFSIGI D  P      K    +    E  +       +  L+
Sbjct: 673 NFFNGAQTVVNYWLLHHGFSIGIGDTIPDLPTIQKIENAVRVRKEEVDEITASATDNTLE 732

Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
             PG +  +T E+ ++  LN  R++AG     S    N+ + M++ GSKGS INISQM A
Sbjct: 733 PLPGMNVRETFESKVSRALNNARDEAGTETEKSFKDLNNAVQMARSGSKGSIINISQMTA 792

Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
            VGQQSV G+R P GF  R+LPHF +    P ++GFV NS+  GL+ TEFFFH M GREG
Sbjct: 793 VVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREG 852

Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGK 786
           L+DTAVKTA+TGY+ R+L+KALE++ ++YD +VRN+ G +VQFLYG+DG+D A++E +
Sbjct: 853 LIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVVQFLYGEDGLDGAHIENQ 910



 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 198/399 (49%), Gaps = 49/399 (12%)

Query: 895  SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
            +R+       G  +G + AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KEI+N A  
Sbjct: 1080 NRFSRAMANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATH 1139

Query: 955  ISTPIITAELECND--NENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
            I TP +T   + +   ++ +A+ ++  +E T L  V ++ +I     + S VI  D + +
Sbjct: 1140 IKTPSMTVYQDSSRAMDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTVIEADRDMV 1199

Query: 1013 QDAHLCINADIVKES----------IVQTPKIKLKQQHIKVLDFRKLEIFPP-------- 1054
            + ++  I  D+  +S          I+  PK+  K   ++ +  R  + +P         
Sbjct: 1200 E-SYFIIPEDVADDSSRQSKWLLRIILSRPKLLDKNLTVQDVAMRIKDAYPQDIAVIFSD 1258

Query: 1055 --VDKSKIHFEL---------------YSLK----NVLPMVIVKGIKTVERVVIAEKEK- 1092
               D+  I                    +LK    ++L  + ++G+  +ER  I EK + 
Sbjct: 1259 NNADEQVIRIRQIQDTKQDDDDDTEYDVTLKKLEGHLLDTLTLRGVAGIERAFINEKSRV 1318

Query: 1093 ---EKRKVKENGEK---KKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAA 1146
               E   + ++ E    K++ L   G+ L  V+   G+D  +T SN   E+ +  GIEA 
Sbjct: 1319 RVLEDGSLHQSSEDPLCKEWVLETSGSALGEVLTIPGVDTTRTYSNQFVEILEVFGIEAT 1378

Query: 1147 RICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEK 1206
            R  ++ E+ + +   G  ++ RH+ LL D+MT RG ++ +TR GI + D   LM  SFE+
Sbjct: 1379 RTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRCSFEE 1438

Query: 1207 TADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            T + L +A+     D   GVSE +I+G   P GTG   +
Sbjct: 1439 TVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDV 1477


>gi|448293470|ref|ZP_21483576.1| DNA-directed RNA polymerase subunit A' [Haloferax volcanii DS2]
 gi|445570524|gb|ELY25084.1| DNA-directed RNA polymerase subunit A' [Haloferax volcanii DS2]
          Length = 974

 Score =  501 bits (1289), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/757 (37%), Positives = 421/757 (55%), Gaps = 50/757 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P ++   F+ + D D   L +     RPE +I+T + VPP+  RPS+ +D  Q +E+D
Sbjct: 245 LMPSDIRDWFEDVPDEDLVTLGIDPDRSRPEWMILTVLPVPPVTARPSITLDNGQRSEDD 304

Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
           +T +L  II+ N    +              WE LQ  V  +I++++ G P +  +  RP
Sbjct: 305 LTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFIDNEISGTPPARHRSGRP 364

Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
           L    QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+A  +T    V+
Sbjct: 365 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVASEMTQTMNVT 424

Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
           + N+++ RQ ++NGP+ +PGA  +R PDG    +  K   +LA +++ G  V+RHL DGD
Sbjct: 425 ERNVDEARQYVRNGPESHPGANYVRRPDGRRLKVTEKNCEELAEKVELGWEVNRHLVDGD 484

Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
           +V+FNRQPSLHRMSIM H   +MP++T R N  VC PYNADFDGDEMNMH  Q EEAR E
Sbjct: 485 IVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAE 544

Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD-TFYDRAAFSLMCCYMGDGMDR 440
           A +LM VQ  + +P+ GE ++ + QD ++ ++L+T  +  F +  A  L+         R
Sbjct: 545 ARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTHDNPEFVETQALDLLRAT------R 598

Query: 441 VD-LPTPAILKP--VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
           VD LP PA         WTG+Q+FS L+    NM            +++K+  T      
Sbjct: 599 VDTLPEPAGENEGGQPYWTGQQIFSELLPDDLNME-----------FTSKVGDT------ 641

Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
                      V   + +L+ G + +  +G    + +   L +DY    +   +N +A L
Sbjct: 642 -----------VSIEDGQLVQGTIDEDAVGAFGGE-IVDALAKDYSKTRSRIFINEIASL 689

Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
           + R I + G SIGIDD     E + +  + I   Y+     I+ Y  G+L+  PG    +
Sbjct: 690 AMRAIMHFGLSIGIDDESIPDEATAQVDEAIDAAYDKIQELIEIYEAGELESLPGRSVDE 749

Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
           TLE  I   L + R+ AG+         N  ++MS+ G++ S +N++QM  CVGQQ+V G
Sbjct: 750 TLEMKIMQRLGKARDSAGEIAEDHFEEDNPAVVMSKSGARASMLNLTQMAGCVGQQAVRG 809

Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
            R   G+  R+L H+ +      A GFV NS+ +GL+  EFFFH MGGREGLVDTAV+T+
Sbjct: 810 ERINRGYEGRTLSHYQKGDLSAEAHGFVENSYRAGLTPREFFFHAMGGREGLVDTAVRTS 869

Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL- 796
            +GY+ RRLI AL +L  QYD SVR+  G IVQF +G+DG  P  +      P++ + + 
Sbjct: 870 KSGYLQRRLINALSELEAQYDGSVRDTSGTIVQFEFGEDGTSPVKVSSDDETPIDVENIA 929

Query: 797 --LMKVKATCPPAGQRYLS----PQQVSEIVEKQLAA 827
             ++  + +     +R+L     P  +SE  E ++ A
Sbjct: 930 DRILTSEFSSDEEKERFLGERAPPTNLSEHAEPRVDA 966


>gi|397135944|gb|AFO11467.1| RNA polymerase I, partial [Sugiyamaella smithiae]
          Length = 868

 Score =  501 bits (1289), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 287/712 (40%), Positives = 424/712 (59%), Gaps = 39/712 (5%)

Query: 85  ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
           +L P  VL +FK ++  D   L L+E   RPE +IIT + VPP  +RPS+ ++ +   E+
Sbjct: 14  LLTPSEVLNVFKHISQEDIIKLGLNEDYARPEWMIITVLPVPPPPVRPSIAINETARGED 73

Query: 142 DITERLKRIIQTNASLQ---QELVEAN--SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
           D+T +L  I++ N ++Q   QE   A+  + F+SL     LQ  VA Y+++D+ G P ++
Sbjct: 74  DLTYKLADILKANGNVQRCDQEGAPAHVINEFESL-----LQYHVATYMDNDIAGQPQAL 128

Query: 197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
           Q + RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +P  +AR LT
Sbjct: 129 QKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPRSIARTLT 188

Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
           YPE V+ +NI+KL + ++NGP+++PGA+ +   D   R+     +    + L+ G  V+R
Sbjct: 189 YPEIVTPYNIQKLTELVRNGPNEHPGAKYV-IRDTGERIDLRYHKRAGDIALQYGWKVER 247

Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
           HL D D VLFNRQPSLH+MS+M HR ++MP+ + R N SV +PYNADFDGDEMN+HVPQ+
Sbjct: 248 HLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSSFRMNLSVTSPYNADFDGDEMNLHVPQS 307

Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG 435
           EE R E   L  V   + +P++ + ++   QD L     ++++D+F D      +  ++ 
Sbjct: 308 EETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMSKRDSFIDYEQVMNILFWVP 367

Query: 436 DGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE 495
           +   R+  P PAI KP  +WTGKQ+ S+ I     ++ + +         N LI      
Sbjct: 368 NWDGRI--PPPAIWKPKPMWTGKQMVSLCIPDGIFLQRFDD--------GNPLI------ 411

Query: 496 EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
                   P D  +     E+I G + K T+G     GL   ++R+ G    +G    + 
Sbjct: 412 -------SPKDNGMLISRGEIIYGVVDKKTVG-ATGGGLIHTIMREKGPKVAAGFFGNIQ 463

Query: 556 KLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDA 615
           K+   W+ ++GFSIGI D              I+E  +     I +     L  +PG   
Sbjct: 464 KVVNYWLLHNGFSIGIGDTIADGSTMRDIANTIAEAKQKVQDIIADAQNNTLSPEPGMTL 523

Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
            ++ E  ++ +LN+ R++AG++   SL   N+   M   GSKGS INISQM+ACVGQQ V
Sbjct: 524 RESFEHNVSRVLNQARDNAGRSAELSLKDLNNVKQMVVSGSKGSFINISQMMACVGQQIV 583

Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
            G+R P GF DRSLPHF +    P +KGFV NS+  GL+  EFFFH M GREGL+DTAVK
Sbjct: 584 EGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVK 643

Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           TA+TGY+ RRL+KALED+ +QYD + RN+ G ++QF+YG+DG+D   +E ++
Sbjct: 644 TAETGYIQRRLVKALEDIMVQYDGTTRNSLGDVIQFIYGEDGLDGTQVEKQT 695


>gi|397135963|gb|AFO11476.1| RNA polymerase I, partial [Dipodascopsis uninucleata]
          Length = 871

 Score =  501 bits (1289), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 294/714 (41%), Positives = 429/714 (60%), Gaps = 45/714 (6%)

Query: 86  LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
           L P  +L +FK ++D D E L L+    RP+ LIIT + VPP  +RPS+ +  +   E+D
Sbjct: 15  LKPQAILNVFKHISDQDIERLGLNADYARPDWLIITVLPVPPPPVRPSIAITEAARGEDD 74

Query: 143 ITERLKRIIQTNASLQ---QELVEAN--SAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ 197
           +T +L  I++ NA+++   QE   A+  + F+SL     LQ  VA Y+++D+ G P ++Q
Sbjct: 75  LTYKLADILKANANVRRCDQEGAPAHVLNEFESL-----LQFHVATYMDNDIAGQPQALQ 129

Query: 198 VA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTY 256
            + RP+     RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +P  +AR LTY
Sbjct: 130 KSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLALDQVGVPRSIARTLTY 189

Query: 257 PERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRH 316
           PE V+ +NI +L Q ++NGP+++PGA+ +   D   R+     +    + L+ G  V+RH
Sbjct: 190 PEVVTPYNIHRLTQLVRNGPNEHPGAKYV-IRDTGERIDLRYHKRAGDITLQYGWRVERH 248

Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
           + D D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+E
Sbjct: 249 IVDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 308

Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCCYM 434
           E R E   L  V   + +P++ + ++   QD L     +T++DTF  +D+    L     
Sbjct: 309 ETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTKRDTFLNFDQVMNILYWVPN 368

Query: 435 GDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
            DG     +P PAILKP  LWTGKQL S++I    N++ + +         N L      
Sbjct: 369 WDG----SIPHPAILKPKPLWTGKQLLSMVIPKGINLQRFDD--------KNTL------ 410

Query: 495 EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
                  + P D  +   N E++ G + K T+G     GL   ++R+ G   T    + +
Sbjct: 411 -------LSPRDNGMMIENGEIMYGVVDKKTVG-ATSGGLIHTIMREKGPTVTRDFFSGV 462

Query: 555 AKLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGC 613
             +   W+ ++GFSIGI D +   K + +    +     EV  V I +    +L  +PG 
Sbjct: 463 QTVVNYWLLHNGFSIGIGDTIADAKTMRNITNTIAQAKREVQQV-ILDAQANRLPPEPGM 521

Query: 614 DAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQ 673
              ++ E  ++ +LN  R+ AG++   SL   N+   M   GSKGS INISQM ACVGQQ
Sbjct: 522 TLRESFEQKVSKVLNTARDTAGRSAETSLTDMNNVKQMVVSGSKGSFINISQMSACVGQQ 581

Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
            V G+R P GF  R+LPHF +    P ++GF+ NS+  GL+  EFFFH M GREG++DTA
Sbjct: 582 IVEGKRIPFGFSYRTLPHFTKDDYSPESRGFIENSYLRGLTPQEFFFHAMVGREGIIDTA 641

Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS 787
           VKTA+TGY+ RRL+KALED+S+QYD +VRN+ G I+QF+YG+DG+D   +E +S
Sbjct: 642 VKTAETGYIQRRLVKALEDVSVQYDCTVRNSLGDILQFVYGEDGLDATYVEKQS 695


>gi|324120590|dbj|BAJ78686.1| RNA polymerase II largest subunit [Panorpa takenouchii]
          Length = 1725

 Score =  501 bits (1289), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/717 (39%), Positives = 422/717 (58%), Gaps = 42/717 (5%)

Query: 91  VLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           V  + K +TD +C VL +     RP+ +IIT + VPP+A+RP+V+M G+  N++D+T +L
Sbjct: 212 VWEILKHITDEECFVLGMDPKFARPDWMIITVMPVPPLAVRPAVVMFGAAKNQDDLTHKL 271

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II+ N  L++      +A       + LQ  VA ++++D+ G+P +MQ + +PL    
Sbjct: 272 SDIIKANNELKRNEAAGAAAHVITENIKMLQFHVATFVDNDMPGMPRAMQKSGKPLKAVK 331

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ LT+PE V+  N+E
Sbjct: 332 SRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNLE 391

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLEDGDVVLF 325
           ++++ ++ G  +YPGA+ I   +G    L  +F  + + + L+ G  V+RHL D D+V+F
Sbjct: 392 RMQELVRRGNSQYPGAKYIVRDNGERIDL--RFHPKPSDLHLQCGYKVERHLRDDDLVIF 449

Query: 326 NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 385
           NRQP+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R E   +
Sbjct: 450 NRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENI 509

Query: 386 MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPT 445
                 + TP+  + ++   QD LT+   +T++D F ++     +  ++     +  +P 
Sbjct: 510 HITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPTWNGK--MPQ 567

Query: 446 PAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR--IETMC 503
           P ILKP  LWTGKQ+FS++I  + NM          +T+S     T  DEE     + + 
Sbjct: 568 PCILKPKPLWTGKQIFSLIIPGNVNMI---------RTHS-----THPDEEDDGPYKWIS 613

Query: 504 PNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIG 563
           P D  V   + ELI G L K TLG  +   L  +   + G          +  +   W+ 
Sbjct: 614 PGDTKVMVEHGELIKGILCKNTLGT-SAGSLLHICFLELGHEVAGRFYGNIQTVVNHWLL 672

Query: 564 NHGFSIGIDDV----QPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
             G SIGI D     Q   E+ +   K   +  EV    I++ +  +L+  PG    QT 
Sbjct: 673 LEGHSIGIGDTIADPQTYMEIQNSIKKAKEDVIEV----IQKAHNMELEPTPGNTLRQTF 728

Query: 620 EAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRR 679
           E  +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R
Sbjct: 729 ENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKR 788

Query: 680 APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 739
            P GF  R+LPHF +    P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKTA+T
Sbjct: 789 IPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAET 848

Query: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
           GY+ RRLIKA+E + + YD +VRN+ G ++Q  YG+DG+         GE + F  L
Sbjct: 849 GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGL--------CGETVEFQHL 897



 Score =  177 bits (449), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 133/420 (31%), Positives = 204/420 (48%), Gaps = 61/420 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R++  +  AG  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1051 LSSEAFEWLIGEIETRFQQAQCNAGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1110

Query: 941  GVPRIKEIINGAKRISTPIITAELECNDNENA--ARVVKGRIEKTLLGQVAKSIKIVMTS 998
            GVPR+KEIIN +K+   P +T  L      +A  A+ V  R+E T L +V  +  I    
Sbjct: 1111 GVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 1170

Query: 999  RLASIVIA----------------------------LDMETIQDAHL------------- 1017
               + VIA                            LD + + D  L             
Sbjct: 1171 DPQNTVIAEDQEFVNIYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGF 1230

Query: 1018 -----CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NVL 1071
                 CI  D   E +V   +I +     K  D  +      VDK +    L  ++ N+L
Sbjct: 1231 GDDLNCIFNDDNAEKLVLRIRI-MNSDENKFQDEEET-----VDKMEDDMFLRCIEANML 1284

Query: 1072 PMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGID 1125
              + ++GI+ + +V +   + + +K   + E GE K   ++ L  +GT +  V+    +D
Sbjct: 1285 SDMTLQGIEAIAKVYMHLPQTDSKKRIIITETGEFKAIAEWLLETDGTSMMKVLSERDVD 1344

Query: 1126 GCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLG 1185
              +T SN I E+   LGIEA R  +  E+N  +  +G+ ++ RH+ LL D+MT +G ++ 
Sbjct: 1345 PIRTFSNDICEIFAVLGIEAVRKSVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMA 1404

Query: 1186 ITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
            ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    +GTG   +
Sbjct: 1405 ITRHGINRQDTGALMRCSFEETVDVLMDAACHAEVDPMRGVSENIIMGQLPRMGTGCFDL 1464


>gi|321459276|gb|EFX70331.1| hypothetical protein DAPPUDRAFT_328199 [Daphnia pulex]
          Length = 1457

 Score =  501 bits (1289), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 339/1025 (33%), Positives = 524/1025 (51%), Gaps = 112/1025 (10%)

Query: 64   EFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNI 120
            E      H  E     N+   +L    V  +FK ++D DC +L +     RP+ +IIT +
Sbjct: 179  ELIGEWKHVDEDWQETNL---VLTAGRVWEIFKHISDEDCLILGMDPKYARPDWMIITCL 235

Query: 121  AVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVE 180
             V P A+RP+V+M GS S +ND+T +L  +++ N  L + +    +A       E LQ  
Sbjct: 236  PVSPPAVRPAVVMHGSASKQNDLTRKLADVVKANEELLRNVQSGAAAHIIAENIELLQFH 295

Query: 181  VAQYINSDVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 239
            VA  + +D+ G+P + ++  RP+     RL+G+ GR RGNL GKRV+++ RTVI+PDPNL
Sbjct: 296  VATMMINDLEGLPVAQLESGRPIVSIKARLEGRDGRIRGNLMGKRVDFSARTVITPDPNL 355

Query: 240  KITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKF 299
            +I +V +P  +A+ +T+PE V+  NIEK+++ +Q G     GA+ +   +G       +F
Sbjct: 356  RIDQVGVPRSIAQNITFPEIVTSFNIEKMQELVQQG-----GAKYLTRENGN------RF 404

Query: 300  RNQLAVE---LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVC 356
              +   E   LK G  V+R + DGD+V+ NRQPS+ ++++  +R +++PW + R N    
Sbjct: 405  DIRTVKEYPVLKLGDKVERSIRDGDLVVCNRQPSVQKVAMTGNRVKVLPWASFRLNPCCT 464

Query: 357  NPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 416
             P+N     DEMN+HVPQ+ E R E   ++     + TP+  + ++   QD L  ++ +T
Sbjct: 465  YPFNKYLYSDEMNIHVPQSMETRAEVENILLTPRQIITPQANKPVMGIVQDTLVGTYKLT 524

Query: 417  RKDTFYDRAAFS--LMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVY 474
            ++D F ++      LM     DG     +P PAILKP  LWTGKQLF+++I  + NM + 
Sbjct: 525  KRDVFLEKEQMMNLLMFLPTWDG----KMPKPAILKPRPLWTGKQLFTLIIPGNVNMMI- 579

Query: 475  VNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGL 534
                    T+S      + ++E   + + P D  V   N EL+ G L K TLG  +   L
Sbjct: 580  --------THST---HPDDEDEGPYKWISPGDTKVMIENGELVMGILCKKTLG-ASAASL 627

Query: 535  YSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDD-VQPKKELSDKKGKLISENYE 593
              ++  + G          +  +   W+   G SIGI D +  ++   D +  +     +
Sbjct: 628  LHIIFMELGHEVCGRFYGNIQTVINNWLLYEGHSIGIGDMLVDRQTYMDIQATIEKAKED 687

Query: 594  VCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQ 653
            V  V  K  N+ +L+  PG    QTLE  +  IL   R + G +   SL   N+   M  
Sbjct: 688  VIEVIQKSRND-ELEPTPGNTLQQTLENQVNRILIDARNETGGSAKNSLTEFNNLKAMVV 746

Query: 654  CGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGL 713
             GS GS +NISQ++ACVGQQ+V G+R P GF  R+LPHF +    P ++GFV NS+ SGL
Sbjct: 747  AGSSGSNVNISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDFGPESRGFVENSYVSGL 806

Query: 714  SATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLY 773
            + +EF+FH M  R+ L+DTAVKTA+TGY+ R LIKA+E + + YD +VRN+ G I+QF Y
Sbjct: 807  TPSEFYFHAM-DRKALIDTAVKTANTGYIQRSLIKAMESVMVHYDGTVRNSAGRILQFSY 865

Query: 774  GDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYL--------------SPQQVSE 819
            G DG+   ++E +    +N      + K    P+ + Y+              S + ++E
Sbjct: 866  GGDGLSAESVELQKMPTVNLSNEAFEKKFKFDPSNENYVRRIFNEEITRELISSAEVITE 925

Query: 820  IVEKQLAAY-GKESCSEAF----------------LNSLRKFF----------------E 846
            I  +    Y  +E+  + F                +  ++K F                +
Sbjct: 926  IEHEWEQLYKDREALRQIFPTGENKVVLPCNLQRMIWDVQKIFHINKRAPTDLSPLRVIQ 985

Query: 847  GQQDKLDKKIKFVEDIGWDDKS-----------QILEEVTHKTSGITEK------QLEVF 889
            G +D L K +  V   G D  S           Q L   T  +  I EK        E  
Sbjct: 986  GVRDLLAKCVIVV---GEDKLSIQANQNATLLFQCLVRSTLCSKRIAEKYRLSSEAFEWL 1042

Query: 890  IQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII 949
            I    +R++  + + G  +GA+ AQS+GE  T+MT+ TFHFAGV+S N+T GV R+KEII
Sbjct: 1043 IGKIETRFQQAQAQPGEMVGALAAQSLGERPTKMTVNTFHFAGVSSKNVTLGVARLKEII 1102

Query: 950  NGAKRISTPIITAELECNDNENA--ARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIAL 1007
            N +K   TP +T  L+     +A  A+ V  R+E T L  V K+  I       + VI  
Sbjct: 1103 NISKSPKTPSMTVFLKGQAARDAEKAKNVLCRLEHTTLRMVTKNTAIYYDPDPLNTVILE 1162

Query: 1008 DMETI 1012
            D E +
Sbjct: 1163 DQEFV 1167



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 104/183 (56%), Gaps = 8/183 (4%)

Query: 1069 NVLPMVIVKGIKTVERVVI---AEKEKEKRKVKENGEKK---KYRLLVEGTGLQAVMGAE 1122
            N+L  + ++G++++E+V +      EK++  V E GE +   ++ L  +GT L  V+   
Sbjct: 1266 NMLSDMTLQGMESIEKVSMYLPKTDEKKRIVVTETGEFEAIAEWILETDGTQLMRVLSER 1325

Query: 1123 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1182
             +D  +T SN I E+   LG+EAAR  +  E+N  ++ +G++++ RH+ LL D+MT  G+
Sbjct: 1326 DVDPVRTYSNDIREIFSVLGVEAARKALEKEMNNLLQFYGLNVNHRHLALLCDVMTATGQ 1385

Query: 1183 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1242
            ++ I+   I + D S LM  + ++T   L  A+ +   D + GVS  +I+G    +GTG 
Sbjct: 1386 LMPIS--SIDRQDTSALMKCTVKETVSVLLEAAGHAEIDPLRGVSVNLILGQLPRMGTGC 1443

Query: 1243 LKI 1245
              +
Sbjct: 1444 FDL 1446


>gi|324120540|dbj|BAJ78661.1| RNA polymerase II largest subunit [Teleogryllus emma]
          Length = 1909

 Score =  501 bits (1289), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 289/747 (38%), Positives = 433/747 (57%), Gaps = 29/747 (3%)

Query: 91  VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
           V  + K +TD +C +L +     RP+ +I+T + VPP+++RP+V+M GS  N++DIT + 
Sbjct: 216 VWEILKHITDEECFILGMDPKFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQDDITHKT 275

Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
             II++N  L +      +A       + LQ  VA  +++D+ G+P +MQ + +PL    
Sbjct: 276 SDIIKSNNELIRNEQAGAAAHVISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIK 335

Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
            RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P  +A+ +T+PE V+  NI+
Sbjct: 336 ARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNID 395

Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
           K+++ ++ G  +YPGA+ I   +G  R+          + L+ G  V+RH+ DGD+V+FN
Sbjct: 396 KMQELVRRGNSQYPGAKYIVRDNG-ERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFN 454

Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
           RQP+LH+MS+M HR +++PW T R N S  +PYNADFDGDEMN+HVPQ+ E R E   L 
Sbjct: 455 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLH 514

Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDGMDRVDLP 444
                + TP+  + ++   QD LT+   +T++D F ++      LM   + DG     +P
Sbjct: 515 VTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDG----KMP 570

Query: 445 TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR--IETM 502
            PAILKP  LWTGKQ+FS++I  + NM          +T+S     T  DEE     + +
Sbjct: 571 QPAILKPKPLWTGKQVFSLIIPGNVNMI---------RTHS-----THPDEEDDGPYKWI 616

Query: 503 CPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWI 562
            P D  V   + EL+ G L K TLG  +   L  +   + G          +  +   W+
Sbjct: 617 SPGDTKVMVEHGELVMGILCKKTLGT-SAGSLLHICFLELGHEVCGQFYGNIQTVVNNWL 675

Query: 563 GNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAV 622
              G SIGI D     +   +  K I +  E     I++ +  +L+  PG    QT E  
Sbjct: 676 LLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQ 735

Query: 623 ITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPN 682
           +  ILN  R+  G +   SL   N+   M   GSKGS INISQ++ACVGQQ+V G+R P 
Sbjct: 736 VNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPF 795

Query: 683 GFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYM 742
           GF  R+LPHF +    P ++GFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA+TGY+
Sbjct: 796 GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYI 855

Query: 743 SRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA 802
            RRLIKA+E + + YD +VRN+ G ++Q  YG+DG+    +E ++   +       + K 
Sbjct: 856 QRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEKKF 915

Query: 803 TCPPAGQRYLSPQQVSEIVEKQLAAYG 829
              P  +R+L  +  +E + K+L   G
Sbjct: 916 KFDPTNERHLR-RIFNEDIMKELMGSG 941



 Score =  180 bits (456), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 135/421 (32%), Positives = 205/421 (48%), Gaps = 63/421 (14%)

Query: 881  ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
            ++ +  E  I    +R++  +V  G  +GA+ AQS+GEP TQMTL TFHFAGV+S N+T 
Sbjct: 1055 LSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1114

Query: 941  GVPRIKEIINGAKRISTPIITAEL---ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 997
            GVPR+KEIIN +K+   P +T  L      D E A  V+  R+E T L +V  +  I   
Sbjct: 1115 GVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVL-CRLEHTTLRKVTANTAIYYD 1173

Query: 998  SRLASIVIA----------------------------LDMETIQDAHL------------ 1017
                + VIA                            LD + + D  L            
Sbjct: 1174 PDPQNTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAG 1233

Query: 1018 ------CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NV 1070
                  CI  D   E +V   +I +     K  D  +      VDK +    L  ++ N+
Sbjct: 1234 FGDDLNCIFNDDNAEKLVLRIRI-MNSDDNKFQDEEET-----VDKMEDDMFLRCIEANM 1287

Query: 1071 LPMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGI 1124
            L  + ++GI+ + +V +   + + +K   + E GE K   ++ L  +GT +  V+    +
Sbjct: 1288 LSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDV 1347

Query: 1125 DGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVL 1184
            D  +T SN I E+   LGIEA R  +  E+N  ++ +G+ ++ RH+ LL D+MT +G ++
Sbjct: 1348 DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLM 1407

Query: 1185 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILK 1244
             ITR GI + D   LM  SFE+T D L +A+ +   D + GVSE IIMG    LGTG   
Sbjct: 1408 AITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFD 1467

Query: 1245 I 1245
            +
Sbjct: 1468 L 1468


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.319    0.135    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,942,039,170
Number of Sequences: 23463169
Number of extensions: 798325537
Number of successful extensions: 2012716
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 14239
Number of HSP's successfully gapped in prelim test: 2312
Number of HSP's that attempted gapping in prelim test: 1942079
Number of HSP's gapped (non-prelim): 45451
length of query: 1265
length of database: 8,064,228,071
effective HSP length: 155
effective length of query: 1110
effective length of database: 8,722,404,172
effective search space: 9681868630920
effective search space used: 9681868630920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 83 (36.6 bits)