BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000829
(1265 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens
GN=POLR3A PE=1 SV=2
Length = 1390
Score = 1221 bits (3160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 650/1275 (50%), Positives = 862/1275 (67%), Gaps = 52/1275 (4%)
Query: 1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
++ P + L+K L K I KC K C CG NG VKK +L IIH++ K
Sbjct: 129 LKRPGLTYLQKRGLKKKISDKCR----KKNICHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183
Query: 58 ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
V+ LQ F +AI H KE + + A LNP+ VL LFKR+ D +L ++
Sbjct: 184 KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243
Query: 111 --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
+P LI+T + VPP+ IRPSV+ D S +NE+D+T +L II N +++ +
Sbjct: 244 AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303
Query: 168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
+ W+ LQ++ A YINS++ G+P +M + GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304 QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363
Query: 228 TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
+GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+ NI LR+ +QNGP+ +PGA I
Sbjct: 364 SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQ 423
Query: 286 RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
R+ + YG R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424 RHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482
Query: 346 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+
Sbjct: 483 HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542
Query: 406 QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
QDFLT ++L+T KDTF+DRA + + G D +V LP P ILKPV LWTGKQ+FS
Sbjct: 543 QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602
Query: 463 VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
V++RP + V NL K K Y K E +C ND +V +NSEL+SG +
Sbjct: 603 VILRPSDDNPVRANLRTKGKQYCGKG-----------EDLCANDSYVTIQNSELMSGSMD 651
Query: 523 KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
K TLG+G+K+ ++ +LLRD+G + + M+RLA+L+ ++ N GFSIGI DV P + L
Sbjct: 652 KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711
Query: 583 KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
K +L++ Y+ C+ I+ N GKLQ +PGC A +TLEA+I L+ IR+ AG AC+ L
Sbjct: 712 AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771
Query: 643 PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772 DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831
Query: 703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL QYD +VR
Sbjct: 832 GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891
Query: 763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
++ G I+QF+YG DG+DPA MEGK EPL F R+L +KA P + LS ++ E
Sbjct: 892 SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCPSEPALSKNELILTTE 950
Query: 823 KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
+ C ++FL ++KF +G +K+ K + G +D V ++ IT
Sbjct: 951 SIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007
Query: 883 EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
Q+E F++TC +Y ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067
Query: 943 PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127
Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
I++ L +E I+ L +NA+ V+ SI T K+++K + V + + P + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186
Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
+ L LK LP V+V+GI V R VI + E K+KY+LLVEG L+AVM
Sbjct: 1187 YVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238
Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
G+ G +T SN+ +EV++TLGIEAAR II+EI TM HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298
Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+ G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358
Query: 1242 ILKIRQ---RDAVPP 1253
+ K+ RD PP
Sbjct: 1359 LFKLLHKADRDPNPP 1373
>sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 1220 bits (3156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 648/1275 (50%), Positives = 865/1275 (67%), Gaps = 52/1275 (4%)
Query: 1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
++ P + L+K L K + +KC K CP CG NG VKK +L IIH++ K
Sbjct: 129 LKRPGLTYLQKRGLKKKVSEKCR----KKNTCPYCGAFNGTVKKC-GLLKIIHEKYKTNK 183
Query: 58 ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
V+ LQ F +AI H KE + + A LNP+ VL LFKR+ D +L ++
Sbjct: 184 KVVDPIVSTFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPE 243
Query: 111 --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
+P LI+T + VPP+ IRPSV+ D S +NE+D+T +L II N +++ +
Sbjct: 244 AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303
Query: 168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
+ W+ LQ++ A YINS++ G+P +M + GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304 QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363
Query: 228 TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
+GRTVISPDPNL+I EVA+PI +A+ILT+PE+V+ NI +R+ ++NGPD +PGA I
Sbjct: 364 SGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQQ 423
Query: 286 RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
R+ + YG R ++A ELK G IV+RHL DGD+VLFNRQPSLH++SIM H AR+ P
Sbjct: 424 RHTQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKP 482
Query: 346 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+
Sbjct: 483 HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542
Query: 406 QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
QDFLT ++L+T KDTF+DRA + + G D +V LP PAILKPV LWTGKQ+FS
Sbjct: 543 QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFS 602
Query: 463 VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
+++P + V NL K K Y K E +C ND +V +NSEL+SG +
Sbjct: 603 SILKPSDDCPVKANLRTKGKQYCGKG-----------EDLCYNDSYVTIQNSELMSGSMD 651
Query: 523 KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
K TLG+G+K+ ++ +LLRD+G + M+RLA+L+ ++ N GFSIGI DV P + L
Sbjct: 652 KGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711
Query: 583 KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
K +L+ Y+ C+ I+ N GKLQ +PGC A +TLEA+I L+ IR+ AG AC+ L
Sbjct: 712 AKYELLHAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771
Query: 643 PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
NSPLIM+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772 DKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831
Query: 703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL QYD +VR
Sbjct: 832 GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891
Query: 763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
++ G I+QF+YG DG+DPA MEGK EPL F R+L ++A P + LS ++ E
Sbjct: 892 SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVYPCRSEPALSKNELVLTSE 950
Query: 823 KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
+ C ++FL ++KF +G +K+ K + G +D V ++ IT
Sbjct: 951 SIMKKNEFLCCRDSFLQEIKKFIKGVSEKIKKT---RDKYGINDNGTTEPRVLYQLDRIT 1007
Query: 883 EKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 942
QLE F++TC +Y ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GV
Sbjct: 1008 PTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067
Query: 943 PRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLAS 1002
PRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V
Sbjct: 1068 PRIKEIINASKAISTPIITAQLDKDDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDDCF 1127
Query: 1003 IVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIH 1061
I++ L +E I+ L +NA+ V+ SI + K+++K + V + + P + KS ++
Sbjct: 1128 ILVKLSLERIRLLRLEVNAETVRYSICIS-KLRVKPGDVAVHGEAVVCVTPRENSKSSMY 1186
Query: 1062 FELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGA 1121
+ L SLK LP V+V+GI V R VI + E K+KY+LLVEG L+AVM
Sbjct: 1187 YVLQSLKEELPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMAT 1238
Query: 1122 EGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRG 1181
G+ G KT SN+ +EV++TLGIEAAR II+EI TM HGMSID+RH+MLL+DLMT++G
Sbjct: 1239 HGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 1298
Query: 1182 EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTG 1241
EVLGITRFG+ KM +SVLMLASFEKTADHLF+A+ G+ D + GVSECIIMGIPM +GTG
Sbjct: 1299 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358
Query: 1242 ILKIRQ---RDAVPP 1253
+ K+ +++ PP
Sbjct: 1359 LFKLLHKADKESTPP 1373
>sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus GN=POLR3A
PE=2 SV=1
Length = 1390
Score = 1216 bits (3147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/1276 (50%), Positives = 863/1276 (67%), Gaps = 54/1276 (4%)
Query: 1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK--- 57
++ P + L+K L K I KC K C CG NG VKK +L IIH++ K
Sbjct: 129 LKRPGLTYLQKRGLKKKISDKCR----KKNTCHHCGAFNGTVKKC-GLLKIIHEKYKTNK 183
Query: 58 ------VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE- 110
V+ LQ F +AI H KE + + A LNP+ VL LFKR+ D +L ++
Sbjct: 184 KVVDPIVSSFLQSFETAIEHNKEVEPLLGKAQENLNPLVVLNLFKRIPAEDIPLLLMNPE 243
Query: 111 --RPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVEANSA 167
+P LI+T + VPP+ IRPSV+ D S +NE+D+T +L II N +++ +
Sbjct: 244 AGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303
Query: 168 FKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEY 227
+ W+ LQ++ A YINS++ G+P +M + GFVQRLKGKQGRFRGNLSGKRV++
Sbjct: 304 QMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDF 363
Query: 228 TGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI-- 285
+GRTVISPDPNL+I EVA+P+ +A+ILT+PE+V+ NI LR+ ++NGP+ +PGA I
Sbjct: 364 SGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQ 423
Query: 286 RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 345
R+ + YG R ++A ELK G IV+RHL DGDVVLFNRQPSLH++SIM H AR+ P
Sbjct: 424 RHTQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482
Query: 346 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 405
RT RFNE VC PYNADFDGDEMN+H+PQTEEA+ EAL+LMG + NL TP+NGE L+A+
Sbjct: 483 HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542
Query: 406 QDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD---RVDLPTPAILKPVELWTGKQLFS 462
QDFLT ++L+T KDTF+DRA + + G D +V LP P ILKPV LWTGKQ+FS
Sbjct: 543 QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602
Query: 463 VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 522
V++RP + V NL K K Y R E +C ND +V +NSEL+SG +
Sbjct: 603 VILRPSDDNPVRANLRTKGKQYCG-----------RGEDLCVNDSYVTIQNSELMSGSMD 651
Query: 523 KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 582
K TLG+G+K+ ++ +LLRD+G + + M+RLA+L+ ++ N GFSIGI DV P + L
Sbjct: 652 KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711
Query: 583 KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 642
K +L++ Y+ C+ I+ N GKLQ +PGC A +TLEA+I L+ IR+ AG AC+ L
Sbjct: 712 AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771
Query: 643 PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
NSPL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +RSLPHF + +K PAAK
Sbjct: 772 DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831
Query: 703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
GFVANSFYSGL+ TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL QYD +VR
Sbjct: 832 GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891
Query: 763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
++ G I+QF+YG DG+DPA MEGK EPL F R+L +KA P + LS ++ E
Sbjct: 892 SSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCRSEPALSKNELLLSAE 950
Query: 823 KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVED-IGWDDKSQILEEVTHKTSGI 881
+ C ++FL ++KF + ++ +KIK D G +D V ++ I
Sbjct: 951 SIMKKNEFLCCQDSFLQEIKKFIK----EVSEKIKKTRDKYGINDNGTTEPRVLYQLDRI 1006
Query: 882 TEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQG 941
T Q+E F++TC +Y ++E G+A+GA+ AQSIGEPGTQMTLKTFHFAGVASMNIT G
Sbjct: 1007 TPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLG 1066
Query: 942 VPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLA 1001
VPRIKEIIN +K ISTPIITA+L+ +D+ + AR+VKGRIEKTLLG++++ I+ V
Sbjct: 1067 VPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDC 1126
Query: 1002 SIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKI 1060
I++ L +E I+ L +NA+ V+ SI + K+++K + V + + P + KS +
Sbjct: 1127 FILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDVAVHGEAVVCVTPRENSKSSM 1185
Query: 1061 HFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMG 1120
++ L LK LP V+V+GI V R VI + E K+KY+LLVEG L+AVM
Sbjct: 1186 YYVLQFLKEDLPKVVVQGIPEVSRAVI--------HIDEQSGKEKYKLLVEGDNLRAVMA 1237
Query: 1121 AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFR 1180
G+ G +T SN+ +EV++TLGIEAAR II+EI TM HGMSID+RH+MLL+DLMT++
Sbjct: 1238 THGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYK 1297
Query: 1181 GEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+ G+ D + GVSECIIMGIPM +GT
Sbjct: 1298 GEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGT 1357
Query: 1241 GILKIRQ---RDAVPP 1253
G+ K+ RD PP
Sbjct: 1358 GLFKLLHKANRDPSPP 1373
>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1
Length = 1405
Score = 1176 bits (3041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 617/1282 (48%), Positives = 843/1282 (65%), Gaps = 62/1282 (4%)
Query: 1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
+R P ++ LR++ + K I C M +C +C + G+VKKA L IIH+R +
Sbjct: 126 LRRPGIDNLRRSQICKRINDHCKKMR----RCSKCDAMQGVVKKA-GPLKIIHERFRYVR 180
Query: 61 SLQE--------FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE-- 110
Q+ F A+ E K ++ A LNP+ VL LFK++T DCE+L +
Sbjct: 181 KSQDDEENFRHSFDEALKTIPELKMHLSKAHDDLNPLKVLNLFKQITPVDCELLGMDPEH 240
Query: 111 -RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFK 169
RPE L+ + PP+ IRPSV +G+ + E+D+T ++ II T++ ++ L +
Sbjct: 241 GRPENLLWRYVPAPPVCIRPSVAQEGA-TTEDDLTVKITEIIWTSSLIRAALSKGTPISN 299
Query: 170 SLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
+ WE +Q+ +A YINS++ G+ S ++P+ GF QRLKGKQGRFRGNLSGKRV+++G
Sbjct: 300 LMEQWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 359
Query: 230 RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYP 288
RTVISPDPNL+I +VA+P R+A+ILT+PERV+ N + L+ CI+NGPD +PGA +I
Sbjct: 360 RTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVIDRE 419
Query: 289 DGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 348
G R L RN++A +LK G IV+RHL D DVVLFNRQPSLH++SIM H ++ PWRT
Sbjct: 420 SGFKRFLRFGNRNRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHLVKVRPWRT 479
Query: 349 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDF 408
LRFNE VC PYNADFDGDEMN+HVPQTEEA+TEAL LMG++NNL +P+NGE ++A+TQDF
Sbjct: 480 LRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGEPIIAATQDF 539
Query: 409 LTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPH 468
+T+++L++ KDTF DR + S +CCYM D +DLP PAI+KP LWTGKQ+F+VL++P+
Sbjct: 540 ITAAYLLSLKDTFLDRKSISNICCYMMDASTHIDLPPPAIIKPRCLWTGKQVFTVLMKPN 599
Query: 469 ANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGN 528
+V VNL K +++S I+++ E MCP DG++ RNSE+I+G + K+ +G+
Sbjct: 600 RFSKVLVNLDAKTRSFSR--IKSKTPE------MCPKDGYLMIRNSEIIAGVVDKSVVGD 651
Query: 529 GNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLI 588
G KD L+ V+LRDYGA + + RL+K+ AR++GN GFSIGI+DVQP K LS +K L+
Sbjct: 652 GKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIEDVQPGKSLSSQKEILV 711
Query: 589 SENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSP 648
++ Y + I +Y +G L+ +PG D TLEA I+ L+++R+D G+ CM L NSP
Sbjct: 712 NKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISSTLSKVRDDVGEICMDELGPANSP 771
Query: 649 LIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANS 708
LIM+ CGSKGS IN+SQMVACVGQQ + G+R P+GF DRSLPHF + +K P AKGFV+NS
Sbjct: 772 LIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHFHKNSKHPLAKGFVSNS 831
Query: 709 FYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCI 768
FYSGL+ TEF FH + GREGLVDTAVKTA+TGYMSRRL+K+LEDLS YD +VR++ +
Sbjct: 832 FYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAYDGTVRSSNSDV 891
Query: 769 VQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQL-AA 827
VQF+YGDDG+DP MEG G+ + F R + + P ++ + V + L
Sbjct: 892 VQFVYGDDGLDPTYMEG-DGQAVEFKRTWIHSVNLNYDRHDSAMLPYEIIDYVNRALDDP 950
Query: 828 YGKESCSEAFLNSLRKFFEGQQDKLDKKIK-------FVEDIGWDDKSQI----LEEVTH 876
+C+ F+ ++R F K ++ +E+ DD + V
Sbjct: 951 KFLTNCNRDFIETIRTFVIENIAKYLASVRERRDLAPMLEEPDMDDLDDMEGDEFAPVAK 1010
Query: 877 KTS-----GITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 931
+ S +TEKQL F+ C+ +Y +VE GTA+GAIGAQSIGEPGTQMTLKTFHFA
Sbjct: 1011 RKSVENIIRVTEKQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFA 1070
Query: 932 GVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKS 991
GVA+ T GVPRIKEIIN AK ISTPIIT +L + +E +ARVVKGRIEKT L V
Sbjct: 1071 GVAAQT-TLGVPRIKEIINAAKTISTPIITGQLINDRDERSARVVKGRIEKTYLKDVTSY 1129
Query: 992 IKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLD-FRKLE 1050
I+ V + I ++ +TI L I + +I TPK+K+ Q + V + +++
Sbjct: 1130 IEEVYGPVTTYLSIQVNFDTISKLQLDITLADIAAAIWNTPKLKIPSQQVTVNNTLQQIH 1189
Query: 1051 IFPPVD----KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKY 1106
+ D ++++++ L + K VLP V+V GI T+ R VI N E K
Sbjct: 1190 VHTSSDGKSSETEVYYRLQTYKRVLPDVVVAGIPTINRSVI------------NQESGKI 1237
Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
L +EGTGLQAVM EGI G KT +NH+ E++ LGIEAAR II EI TM HG+++D
Sbjct: 1238 ELFMEGTGLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVD 1297
Query: 1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
RH+MLL D+MT +GEVLGITRFG+ KM SVL LASFEKT DHLFNA+ D IEG+
Sbjct: 1298 PRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLALASFEKTTDHLFNAAARFAKDSIEGI 1357
Query: 1227 SECIIMGIPMPLGTGILKIRQR 1248
SECI++G P+GT + ++ +R
Sbjct: 1358 SECIVLGKLAPIGTNVFQLIRR 1379
>sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1
SV=1
Length = 1460
Score = 1154 bits (2986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/1340 (46%), Positives = 839/1340 (62%), Gaps = 111/1340 (8%)
Query: 1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAV-----LGIIHDR 55
+R P ++ LR+ ++K I+ +C K +C CG +NG+VKKA A L IIHD
Sbjct: 127 LRRPGVDNLRRMGILKKILDQCK----KQRRCLHCGALNGVVKKAAAGAGSAALKIIHDT 182
Query: 56 SKVTES---------LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
+ + E+ + H E + V LNP+ L LFK++ DCE+L
Sbjct: 183 FRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELL 242
Query: 107 YL-----SERPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQE 160
+ S RPE I + PP+ IRPSV+M D SNE+D+T +L I+ T++ ++
Sbjct: 243 GIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAG 302
Query: 161 LVEANSAFKSLAGWETLQVEVAQYINSD------VRGVPFSMQVARPLSGFVQRLKGKQG 214
L + S + W+ LQ+ VA YINSD + G +P+ GF QRLKGKQG
Sbjct: 303 LDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQG 362
Query: 215 RFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQN 274
RFRGNLSGKRV+++GRTVISPDPNL I EVA+P R+A++LTYPE+V+ +N KL++ I N
Sbjct: 363 RFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVN 422
Query: 275 GPDKYPGARMI--RYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLH 332
GP+ +PGA + R D + YG R +LA L+ G +V+RHLEDGDVVLFNRQPSLH
Sbjct: 423 GPNVHPGANYLLKRNEDARRNLRYGD-RMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLH 481
Query: 333 RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNL 392
R+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL
Sbjct: 482 RLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 541
Query: 393 CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
TPK+GE ++A+TQDF+T S+LI+ KD+FYDRA + + M DG++ D+P PAI+KP
Sbjct: 542 LTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGIEHFDIPPPAIMKPY 601
Query: 453 ELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFR 512
LWTGKQ+FS+LI+P+ N V +NL K K + ++ +E M NDGFV R
Sbjct: 602 YLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNE------MSQNDGFVIIR 655
Query: 513 NSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGID 572
S+++SG + K+ LG+G K ++ +LRDYG + MNR+AKL AR++GN GFSIGI+
Sbjct: 656 GSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSIGIN 715
Query: 573 DVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRE 632
DV P +L KK +L+ Y C+ I +N+G+L+ +PGC+ QTLEA I +L+++RE
Sbjct: 716 DVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVRE 775
Query: 633 DAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 692
+ G C+ L N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF
Sbjct: 776 EVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 835
Query: 693 PRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALED 752
P+ +K P +KGFV NSF+SGLS EF FH + GREGLVDTAVKTA+TGYMSRRL+K+LED
Sbjct: 836 PKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 895
Query: 753 LSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYL 812
LS QYDN+VR + IVQF YG DG+DP MEG + +P+NF+R + L
Sbjct: 896 LSCQYDNTVRTSANGIVQFTYGGDGLDPLEMEG-NAQPVNFNRSWDHAYNITFNNQDKGL 954
Query: 813 SPQQVSEI-------VEKQLAAYGKESC------------------SEAFLNSLRKFFEG 847
P + E +E++L Y C F +SLR++ G
Sbjct: 955 LPYAIMETANEILGPLEERLVRYDNSGCLVKREDLNKAEYVDQYDAERDFYHSLREYING 1014
Query: 848 QQDKLDKKIK-----------FVEDIGWDDKSQILEEVTHKTSG---ITEKQLEVFIQTC 893
+ L K E G D + + V S I+EK + F++
Sbjct: 1015 KATALANLRKSRGMLGLLEPPAKELQGIDPDETVPDNVKTSVSQLYRISEKSVRKFLEIA 1074
Query: 894 FSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAK 953
+YR R+E GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K
Sbjct: 1075 LFKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASK 1134
Query: 954 RISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ 1013
ISTPII A L +++E AARVVKGR+EKTLL VA ++ V L+ I + +D+ TI
Sbjct: 1135 VISTPIINAVLVNDNDERAARVVKGRVEKTLLSDVAFYVQDVYKDNLSFIQVRIDLGTID 1194
Query: 1014 DAHLCINADIVKESIVQTPKIKLKQQHIKVL--DFRKLEIFPPVDKSK------------ 1059
L + + + +I + K+K++ + ++ D + +FP K+K
Sbjct: 1195 KLQLELTIEDIAVAITRASKLKIQASDVNIIGKDRIAINVFPEGYKAKSISTSAKEPSEN 1254
Query: 1060 -IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
+ + + L+ LP V+VKG+ + R VI ++ KR+ LLVEG GL+ V
Sbjct: 1255 DVFYRMQQLRRALPDVVVKGLPDISRAVINIRDDGKRE-----------LLVEGYGLRDV 1303
Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
M +G+ G +T +NH+ EV LGIEAAR II EIN TM HGMS+D RH+ LL D+MT
Sbjct: 1304 MCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMT 1363
Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
++GEVLGITRFG+ KM SVL LASFEKT DHLF+A+ + D +EGVSECII+G M +
Sbjct: 1364 YKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSI 1423
Query: 1239 GTGILK------IRQRDAVP 1252
GTG K I ++D VP
Sbjct: 1424 GTGSFKVVKGTNISEKDLVP 1443
>sp|Q6BI69|RPC1_DEBHA DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC
2968) GN=RPC1 PE=3 SV=2
Length = 1457
Score = 1152 bits (2981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 616/1327 (46%), Positives = 846/1327 (63%), Gaps = 106/1327 (7%)
Query: 1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV-----AVLGIIHD- 54
+R P ++ LR+ ++K ++++C K +C C ++NG+VKKA A L I+HD
Sbjct: 127 LRRPHIDNLRRMKILKKLLEQCK----KQRRCLNCNHVNGVVKKAASGAGPAALKIVHDT 182
Query: 55 ------RSKVTESL--QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 106
++ + L +EF + E + V LNP+ VL LFK+++ +DCE+L
Sbjct: 183 FRWIGKKATPEKDLWDKEFDEVFSRNPELEKFVKRIHDDLNPLKVLNLFKQISPSDCELL 242
Query: 107 YLSE----RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELV 162
+ RPE I + PP+ IRPSV+MD +QSNE+D+T +L I+ T++ ++ +
Sbjct: 243 GIDSARGGRPEMYIWRYLPAPPVCIRPSVMMD-AQSNEDDLTIKLTEIVWTSSLIKAGIE 301
Query: 163 EANSAFKSLAGWETLQVEVAQYINSDVRGVPF------SMQVARPLSGFVQRLKGKQGRF 216
+ S + W+ LQ+ VA YINSD + ++P+ GF QRLKGKQGRF
Sbjct: 302 KGISINNLMEQWDYLQLSVAMYINSDSANPALLPSSGGGSKSSKPIRGFCQRLKGKQGRF 361
Query: 217 RGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGP 276
RGNLSGKRV+++GRTVISPDPNLKI EVA+P R+A++LTYPE+ + +N +KL++ I +GP
Sbjct: 362 RGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQKLILSGP 421
Query: 277 DKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMS 335
+ +PGA +++ + R L R +LA L G +V+RH+EDGD+VLFNRQPSLHR+S
Sbjct: 422 NVHPGANYLLKQNESAKRNLRFGDRVKLAKNLHIGDVVERHIEDGDIVLFNRQPSLHRLS 481
Query: 336 IMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTP 395
I+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EA+ LMGV+NNL TP
Sbjct: 482 ILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNIHVPQTEEARAEAINLMGVKNNLLTP 541
Query: 396 KNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELW 455
K+GE ++A+TQDF+T S+L++ KD+F+DRA+ + C M D + D+P PAI KPV LW
Sbjct: 542 KSGEPIIAATQDFITGSYLVSHKDSFFDRASLVQLLCMMSDADIQFDIPPPAIFKPVMLW 601
Query: 456 TGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSE 515
TGKQ+FS+LI+P+ V +NL K KTY+ + M PNDGFV R S+
Sbjct: 602 TGKQVFSLLIKPNKKSNVVINLDAKNKTYTPPAKGFPNE-------MSPNDGFVIIRGSQ 654
Query: 516 LISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQ 575
++SG + K+TLG+G K ++ +LRDYG + MNR+AKL AR++GN GFSIGI+DV
Sbjct: 655 ILSGVMDKSTLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARYLGNRGFSIGINDVI 714
Query: 576 PKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAG 635
P +L KK ++ + Y C+ I YN G L+ +PGC+ QTLEA I +L+++RE+ G
Sbjct: 715 PGSDLKQKKELMVEQAYLKCDELIDLYNRGNLETQPGCNEEQTLEAKIGGLLSKVREEVG 774
Query: 636 KACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRK 695
+ C+ L N+PLIM+ CGSKGS +N+SQMVA VGQQ + G R P+GF DRSLPHF +
Sbjct: 775 EICINELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKN 834
Query: 696 AKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI 755
+K P +KGFV NSF+SGL+ EF FH++ GREGLVDTAVKTA+TGYMSRRL+K+L+DLS
Sbjct: 835 SKTPQSKGFVRNSFFSGLTPPEFLFHSISGREGLVDTAVKTAETGYMSRRLMKSLDDLSA 894
Query: 756 QYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQ 815
QYD++VRN+ IVQF YG DG+DP +MEG + P+NF R + L P
Sbjct: 895 QYDHTVRNSSNGIVQFTYGGDGLDPFDMEGDA-RPVNFVRQWDHAYNITFDIEDKGLLPY 953
Query: 816 QVSEIV-------EKQLAAY------------------GKESCSEAFLNSLRKFFEGQQD 850
Q+ E+V E +L Y + F S+R+F +
Sbjct: 954 QIIELVDSILHPLEDRLVRYDNVGKIIPLEDSDKIEYIDQNDAEREFYQSIREFTTNKAT 1013
Query: 851 KL----DKKI------KFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVK 900
KL +KK+ + ED D+S ++ S ++ + F++ C +Y
Sbjct: 1014 KLAEIREKKMLKPFLTEPAEDFIRLDESDESLVAINQLSKVSANSINKFLEQCIYKYSRA 1073
Query: 901 RVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPII 960
+VE GTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN +K ISTPII
Sbjct: 1074 KVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPII 1133
Query: 961 TAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCIN 1020
+ L +D+E AARVVKGR+EKTLL VA I+ V + +A + I +D+ TI+ L +N
Sbjct: 1134 NSVLVNDDDEIAARVVKGRVEKTLLEDVAYFIEDVYKNNMAYLSIKIDLNTIEKLQLELN 1193
Query: 1021 ADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK--------------------- 1059
+ + SI PK+K+ + V ++ + + + K
Sbjct: 1194 IESIAHSIANAPKLKILAGDVSVTGKDRINVLVTLREPKSINLMKNASADYKGTDASIVN 1253
Query: 1060 -IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAV 1118
+ F + LK LP + +KG+ + R VI ++++G+K+ LLVEG GL+ V
Sbjct: 1254 SLFFRMQHLKRALPRICIKGLPDISRAVI--------NIRDDGKKE---LLVEGYGLKEV 1302
Query: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178
M +G+ G KT +NHI EV Q LGIEAAR II EI+ TM HGMS+D RH+ LL D+MT
Sbjct: 1303 MSTDGVVGTKTSTNHILEVFQVLGIEAARASIIGEIDYTMSKHGMSVDPRHIQLLGDVMT 1362
Query: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238
++GEVLGITRFG+ KM SVL LASFEKT DHLF+AS ++D+IEGVSECII+G M +
Sbjct: 1363 YKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKNDKIEGVSECIILGQTMNI 1422
Query: 1239 GTGILKI 1245
GTG K+
Sbjct: 1423 GTGAFKL 1429
>sp|Q86AQ5|RPC1_DICDI DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium
discoideum GN=polr3a PE=3 SV=1
Length = 1450
Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/858 (52%), Positives = 599/858 (69%), Gaps = 28/858 (3%)
Query: 1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSK-VT 59
MRN KM+ L++ L+K I +C K +C +CG NGM+KK+ A IIH++ K T
Sbjct: 127 MRNKKMDNLQRKSLLKKIFLECR----KTKECLKCGSTNGMIKKSGA-FKIIHEKYKGKT 181
Query: 60 ESLQEFAS----AITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RP 112
ESLQ++ + AI + E K+ + A LNP+ L LFK+++ D E++ + RP
Sbjct: 182 ESLQDYYALYDDAIKYNPEMKSHIKKAQDDLNPLVALNLFKKISYQDIEIMNMDPVIGRP 241
Query: 113 EKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFKSL 171
E+LI+T + VPP++IRPSV MDG S +NE+D+T +L I+ N ++ + A + +
Sbjct: 242 ERLILTYMLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEILHINEHIRSNVDRAEMS-AIM 300
Query: 172 AGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRT 231
W+ LQ A YINSDV G+P M+ + + G QRLKGK GRFRGNLSGKRV+++GRT
Sbjct: 301 EDWDYLQASCAIYINSDVPGLPLQMKPTKAVRGLSQRLKGKTGRFRGNLSGKRVDFSGRT 360
Query: 232 VISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGT 291
VISPDPNL I EVA+P +A +TYPERV+D+NIE+L++ + NGPD++PGA I Y DG
Sbjct: 361 VISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPGANYIIYADGV 420
Query: 292 ARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRF 351
+ L R + A ELK G IV+RH+ DGD++LFNRQPSLH++SIM H+AR+MPWRTLRF
Sbjct: 421 KKWLKFGNREKFAAELKIGDIVERHIIDGDIMLFNRQPSLHKLSIMSHKARVMPWRTLRF 480
Query: 352 NESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTS 411
NE VC PYNADFDGDEMN+H+PQTEEAR EA +LMGV NNL TP+NGE LVA+TQDFLT+
Sbjct: 481 NECVCTPYNADFDGDEMNIHLPQTEEARAEATILMGVTNNLITPRNGEPLVAATQDFLTA 540
Query: 412 SFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANM 471
S+LI+R+D FY+R F+LMC + D + +DLP PAILKPVELWTGKQ+F VL+RP
Sbjct: 541 SYLISRRDAFYERYRFALMCTHFADANEHIDLPPPAILKPVELWTGKQIFEVLLRPSVKS 600
Query: 472 RVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNK 531
V N + +TYS L MCP DG+VYFRNSEL+ G + K+ +G GNK
Sbjct: 601 HVLCNFETRSRTYSKNLY------------MCPKDGYVYFRNSELMCGSIDKSIIGGGNK 648
Query: 532 DGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISEN 591
+ L+ +L+RD+ + CM RLAKL AR++G+ GFSIGI D++P ++L KK ++I
Sbjct: 649 NSLFHILMRDFSPTIAANCMTRLAKLCARFLGDQGFSIGIPDIKPAEDLDRKKREIIETA 708
Query: 592 YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIM 651
Y+ C V +K+Y G LQL GC QT EA + L++IR+D GK C+ LP NSPLIM
Sbjct: 709 YKKCAVFLKDYESGSLQLSSGCSMEQTFEAKMNQTLSQIRDDCGKLCVNDLPNYNSPLIM 768
Query: 652 SQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYS 711
CGSKGS INI+QM+ CVGQQ V G R PNGF +R+ PHF AK P +KGFV+NSFY+
Sbjct: 769 GLCGSKGSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPHFKHFAKNPKSKGFVSNSFYT 828
Query: 712 GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQF 771
G+ TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+KALEDLS YD +VR++ G IVQF
Sbjct: 829 GMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRDSIGGIVQF 888
Query: 772 LYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKE 831
+YGDDG+DPA ME K P++F R +M VK+T + + P ++ ++VE + + E
Sbjct: 889 IYGDDGLDPAGMEAKD-RPVDFLRAMMSVKSTRQCRNEPEMKPFEIRKLVESIIDSSKFE 947
Query: 832 SCSEAFLNSLRKFFEGQQ 849
+C++ F N +R FF G +
Sbjct: 948 ACTDLFKNEIRVFFNGNE 965
Score = 397 bits (1019), Expect = e-109, Method: Compositional matrix adjust.
Identities = 214/378 (56%), Positives = 262/378 (69%), Gaps = 10/378 (2%)
Query: 872 EEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 931
E V ++ IT+ Q+E+F+ C +Y R+E GTA+GAIGAQSIGEPGTQMTLKTFHFA
Sbjct: 1067 EHVVNQIHRITKTQIELFLDICLDKYSRARIEPGTAVGAIGAQSIGEPGTQMTLKTFHFA 1126
Query: 932 GVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKS 991
GVASMN+T GVPRIKEIIN AK ISTPIITA L C+ + +AR+V GRIEKT LG VA
Sbjct: 1127 GVASMNVTLGVPRIKEIINAAKNISTPIITASLNCDYDIRSARIVAGRIEKTTLGHVATH 1186
Query: 992 IKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEI 1051
IK V+ + I +D + L IN+ + +SI T +KLK + I KL I
Sbjct: 1187 IKEVVKRAGCYLSIKIDKNFVDSLQLEINSKTISQSIASTKGLKLKPEQITTNGDYKLRI 1246
Query: 1052 FPPVD-KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLV 1110
PP + + + L LKN LP VIVKGI TV RVVI+ KV E E +Y+LLV
Sbjct: 1247 VPPANIREGSLYYLQFLKNNLPAVIVKGIPTVNRVVIS-------KVDEKQE--RYQLLV 1297
Query: 1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
EG L+AVM GI G T SNHI E + TLGIE AR I+ EI+ M +HGMSID RH+
Sbjct: 1298 EGYDLRAVMATPGIKGTHTTSNHIMECENTLGIETARNTIMSEIDMIMTSHGMSIDIRHV 1357
Query: 1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
MLLADLM+F+GE+LGITRFGI KM +SVLMLASFEKT DHLF+A+V+ R D I GVSECI
Sbjct: 1358 MLLADLMSFKGEILGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHHRQDDIVGVSECI 1417
Query: 1231 IMGIPMPLGTGILKIRQR 1248
IMG+ +PLGTG+ K+ ++
Sbjct: 1418 IMGVVIPLGTGLFKLLRK 1435
>sp|P25202|RPC1_GIAIN DNA-directed RNA polymerase III subunit RPC1 OS=Giardia intestinalis
GN=RPOA3 PE=3 SV=1
Length = 1741
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/1014 (40%), Positives = 580/1014 (57%), Gaps = 84/1014 (8%)
Query: 300 RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
R +A L+ IV RHL D +LFNRQPSLHRMSIM A I RT FN VC+P+
Sbjct: 660 RQAIANSLRPNDIVYRHLLPNDTLLFNRQPSLHRMSIMQFNAVIHENRTFSFNPVVCSPF 719
Query: 360 NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
NADFDGDEMN+ Q +EAR EA +LMG N+ +P++GE ++ TQDFLT +L++ K
Sbjct: 720 NADFDGDEMNIFYMQGQEARAEAGILMGSHENIISPRHGECMIGLTQDFLTGIYLLSGKG 779
Query: 420 TFYDRAAFSLMCCYMGDGM---------------------DR----------VDLPT--- 445
F R + Y DG DR V +P
Sbjct: 780 IFMTRQEYCQHVSYGCDGFGDATYGVSLYNYGREFIKSIHDRRGTEEDTVGFVKVPCLSQ 839
Query: 446 PAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 505
P I+ P +L++GKQ+ SVL++ + V +NL +KTY + D + R + N
Sbjct: 840 PCIVYPRQLYSGKQVLSVLMKGNDFDSVNINLEHGDKTY-------KKDSDRR--ALSVN 890
Query: 506 DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
D ++ +NSE + G+L K L + +K+ ++ L+++YG + + M R AK++AR++ N+
Sbjct: 891 DDYIIIQNSEHLVGRLTKTFLAS-SKNCIFYFLVQNYGPVSAARIMLRFAKVAARFLMNY 949
Query: 566 GFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITD 625
GF+IGIDDV P + + KK ++ E YE KI++Y GKL+ PG +TLEA +
Sbjct: 950 GFTIGIDDVMPSQRVLGKKEVIVQEGYEKAQEKIRDYESGKLEAIPGSTVQETLEATLNQ 1009
Query: 626 ILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFI 685
IL+ +RE + + L + N PLIMS CGSKGSPINI+QM+ +GQQS GG RAP+ F
Sbjct: 1010 ILSNVRESCAQIALKELHFTNKPLIMSLCGSKGSPINIAQMIIILGQQSFGGSRAPDDFY 1069
Query: 686 DRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRR 745
RS P+F +KEP AKGF+ NSFY+GL EF H GR+G++D+A KTADTGY+ RR
Sbjct: 1070 TRSTPYFYHYSKEPNAKGFILNSFYTGLLPFEFLAHARAGRDGVIDSACKTADTGYLQRR 1129
Query: 746 LIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV----- 800
L+K LEDLS+ YD +VRN+ +VQF +G DG DP +E +G+ + D LL +
Sbjct: 1130 LVKCLEDLSVSYDFTVRNSKKSVVQFRFGHDGFDPIKLEVGTGQCFDLDTLLRHIILLNR 1189
Query: 801 -----KATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKK 855
+ P RY + ++ ++ K YG+E+C N F + KL
Sbjct: 1190 SQDLAEGAFPVLLDRYKAEAELDVLLNKDF--YGQEACLIERSNVTSYFQQSILPKLTTN 1247
Query: 856 IKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQS 915
+ + L+ + +T+K ++ F++ +Y +E G+ GA+ AQS
Sbjct: 1248 THIATTVAPALAASFLQ------TTLTKKDIDDFLRQVRRKYIRLNLEPGSPCGAVAAQS 1301
Query: 916 IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECN-DNE---- 970
+GEP TQMTLK+FH AG+ASMNITQGVPR+KEI++G +ISTPI T EL + D E
Sbjct: 1302 VGEPSTQMTLKSFHHAGLASMNITQGVPRLKEIVDGVVKISTPITTVELHVDVDKEELAA 1361
Query: 971 -------NAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLC--INA 1021
AR++K IE T LGQ++ SI + + I + LDM+ I D L I
Sbjct: 1362 TVTEKYLEKARMMKNIIECTYLGQISASIIECYSQSVCHIEVNLDMKIIADMGLAGIITV 1421
Query: 1022 DIVKESIVQTPKIKL---KQQHIKVLDFRKLEIFP--PVDKSK--IHFELYSLKNVLPMV 1074
+ V SI+ K K + Q + F P+ +S+ + F++ SLK +LPM+
Sbjct: 1422 ETVVASILHNDKAKKLVGQDQSSGSVSIHSATRFSVRPLTQSRDDLLFDIQSLKLLLPMI 1481
Query: 1075 IVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHI 1134
V GI T R VI E ++ + + KY LLVEG GLQ ++ GID +T SN+I
Sbjct: 1482 PVSGISTCSRAVINEYKEFCQGATSSAPLTKYNLLVEGIGLQNILNVSGIDFTRTLSNNI 1541
Query: 1135 FEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKM 1194
EV TLGIEAA I +EI M +HGM++D RH+ LLAD+M FRG VLG TRFG+ KM
Sbjct: 1542 VEVANTLGIEAAVATISNEIKACMDSHGMAVDMRHIRLLADIMCFRGRVLGFTRFGLTKM 1601
Query: 1195 D-KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQ 1247
SV+MLASFEKT +HLFNA++ + D GV+E II+G PM +GTG + Q
Sbjct: 1602 KADSVIMLASFEKTGEHLFNAALGNKVDEANGVTESIILGKPMSMGTGSFSLLQ 1655
Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 134/235 (57%), Gaps = 14/235 (5%)
Query: 111 RPEKLIITNIAVPPIAIRPSVIM-DGSQSNENDITERLKRIIQTNASLQQELVE-ANSAF 168
RP+ +I+T+I VPP +RPSV G+ + E+++T L RI+ N L++ +V A +
Sbjct: 302 RPQDVILTHIPVPPSCLRPSVQSGSGAGTTEDNLTSHLVRILTINDKLKEAMVSGAVATS 361
Query: 169 KSLAGWETLQVEVAQ-YINSDVRGV-PFSMQV---ARPLSGFVQRLKGKQGRFRGNLSGK 223
K A W+ L ++V+ YI GV P + + +G + RLKGK GRFR NLSGK
Sbjct: 362 KVYAKWDQLNMDVSLLYIGKIPGGVQPVKNKTDSGTKEGTGIIDRLKGKAGRFRSNLSGK 421
Query: 224 RVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR 283
RV ++GRTVISP+P L + +VAIP +A+ LT+PE V+ NI LR+ I NG YPGA
Sbjct: 422 RVNFSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNG-KTYPGAN 480
Query: 284 MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMC 338
+ + T R Y +L +++K R +E + L +R ++ +C
Sbjct: 481 EVLLLNDTIR--YNPALKRLGIDVKQS----RDMEAKAMELVSRCVDTFNLNSLC 529
>sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC1 OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 1530
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/820 (43%), Positives = 525/820 (64%), Gaps = 38/820 (4%)
Query: 1 MRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE 60
+ + +E L++T L+K+I T A K C +CG +NG+V++ V + ++H++ V
Sbjct: 134 LSSSSLEPLQRTMLIKTI----QTDAYKTRVCLKCGGLNGVVRR-VRPMRLVHEKYHVEP 188
Query: 61 SL-------------QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLY 107
E +A + K L+PV V LF + + +L
Sbjct: 189 RRGEGPRENPGGFFDAELRTACAYNKVVGECREFVHDFLDPVRVRQLFLAVPPGEVILLG 248
Query: 108 LSE--RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEAN 165
L+ P L++T + VPP+ +RP + ++D+T + I+ + ++Q ++A
Sbjct: 249 LAPGVSPTDLLMTTLLVPPVPVRPRGCAGTTTVRDDDLTAQYNDILVSTDTMQDGSLDAT 308
Query: 166 SAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRV 225
++ WE LQ+ A+ ++S + G P +++ + L + QRLK K GRFR NLSGKRV
Sbjct: 309 RYTET---WEMLQMRAARLLDSSLPGFPPNVRTS-DLKSYAQRLKSKHGRFRCNLSGKRV 364
Query: 226 EYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI 285
+Y+GR+VISPDPNL + E+A+P+ +AR+LTYP+RV N E +R+ ++NGP +PGA +
Sbjct: 365 DYSGRSVISPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPGATTV 424
Query: 286 RYP-DGTARVLYG-KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARI 343
+G+ + L + R++LA L G IV+RH+ +GD+VLFNRQPSLHR+S+M HRAR+
Sbjct: 425 YLAQEGSKKSLKNERDRHRLAARLAVGDIVERHVMNGDLVLFNRQPSLHRVSMMAHRARV 484
Query: 344 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVA 403
+P+RT RFNE C PYNADFDGDEMN+H QTE+AR EAL LM N+ + KNGE ++A
Sbjct: 485 LPFRTFRFNECCCAPYNADFDGDEMNVHFVQTEKARAEALQLMSTARNIISAKNGEPIIA 544
Query: 404 STQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSV 463
TQDFL +++L+T +D F+DR FS M + + + LP PAILKPVELWTGKQLF +
Sbjct: 545 CTQDFLAAAYLVTSRDVFFDRGEFSQMVSHWLGPVTQFRLPIPAILKPVELWTGKQLFEL 604
Query: 464 LIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGK 523
++RP + V ++ K Y+ K G + C +G+V F +S ISG+L K
Sbjct: 605 IVRPSPEVDVLLSFEAPTKFYTRK-----GKHD------CAEEGYVAFLDSCFISGRLDK 653
Query: 524 ATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK 583
LG G KDGL++ L G T+ M+R+A+ ++R++ N+GFS+G+ DV P EL+ +
Sbjct: 654 KLLGGGAKDGLFARLHTIAGGGYTARVMSRIAQFTSRYLTNYGFSLGLGDVAPTPELNKQ 713
Query: 584 KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLP 643
K +++ + EVC+ IK G++ PG Q+LEA + L+++R++ G A + +L
Sbjct: 714 KAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLEARLNTELSKVRDECGTAAVQTLS 773
Query: 644 -WRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
N+PLIM Q GSKGS +NI+QM+ACVGQQ+V G+R + F DRSLPHF R + PAA+
Sbjct: 774 IHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDRSLPHFHRFEEAPAAR 833
Query: 703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
GFVANSFYSGLS TEFFFHTM GREGLVDTAVKTA+TGY+ RRL+KA+E+LS++YD +VR
Sbjct: 834 GFVANSFYSGLSPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDGTVR 893
Query: 763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA 802
N G ++Q +G+DG+DP MEG SG PLN ++ + V+A
Sbjct: 894 NTKGDVIQLRFGEDGLDPQLMEGNSGTPLNLEQEWLSVRA 933
Score = 290 bits (743), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 171/401 (42%), Positives = 234/401 (58%), Gaps = 29/401 (7%)
Query: 855 KIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQ 914
K+K ++ G + + LE + + +T + FI C S+Y K E GT GAI AQ
Sbjct: 1092 KVKDSKEGGRVSELRDLEMLQTELLPLTRGMVTRFIAQCASKYLRKACEPGTPCGAIAAQ 1151
Query: 915 SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITA--------ELEC 966
S+GEP TQMTL+TFHFAGVASM+ITQGVPR+ E+IN + I+TP++TA E C
Sbjct: 1152 SVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEVINANRNIATPVVTAPVLLMEGEENHC 1211
Query: 967 NDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKE 1026
AR VK +IE+ LL +V I V + + + L+M I HL INA V++
Sbjct: 1212 EIFRKRARFVKAQIERVLLREVVSEIVEVCSDTEFYLRVHLNMSVITKLHLPINAITVRQ 1271
Query: 1027 SIV------QTPKIKLKQQHIKVLDFRKLEIFPPV-DKSKIHFELYSLKNVLPMVIVKGI 1079
I+ +P L + I+V L ++P D +HF L + +LP V+V GI
Sbjct: 1272 RILAAAGHTMSPLRMLNEDCIEVFSLDTLAVYPHFQDARWVHFSLRRILGLLPDVVVGGI 1331
Query: 1080 KTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQ 1139
+ R +I+ E +L EG L+AVM G+D + NH+ V++
Sbjct: 1332 GGINRAMISSNGTE--------------VLAEGAELRAVMNLWGVDSTRVVCNHVAVVER 1377
Query: 1140 TLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVL 1199
LGIEAAR I+DEI +KA+ +SID RH+ LLADLMT RG VLGITR+GIQKM+ +VL
Sbjct: 1378 VLGIEAARRVIVDEIQNILKAYSLSIDVRHVYLLADLMTQRGVVLGITRYGIQKMNFNVL 1437
Query: 1200 MLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1240
+ASFE+T DHL+NA+ R DR VS+ II+G P+PLGT
Sbjct: 1438 TMASFERTTDHLYNAAATQRVDRDLSVSDSIIVGKPVPLGT 1478
>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana
GN=RPB205 PE=1 SV=3
Length = 1839
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/1279 (34%), Positives = 667/1279 (52%), Gaps = 148/1279 (11%)
Query: 91 VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
VL + KR++D DC++L + RP+ +I+ + +PP +RPSV+MD + +E+D+T +L
Sbjct: 218 VLSVLKRISDADCQLLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQL 277
Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWET--LQVEVAQYINSDVRGVPFSMQVA-RPLSG 204
II+ N +L+++ E N A + T LQ +A Y ++++ G P + Q + RP+
Sbjct: 278 AMIIRHNENLKRQ--EKNGAPAHIISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKS 335
Query: 205 FVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHN 264
RLK K+GR RGNL GKRV+++ RTVI+PDP + I E+ +P +A LTYPE V+ +N
Sbjct: 336 ICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYN 395
Query: 265 IEKLRQCIQNGPDKYPGARMIRY--PDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDV 322
IE+L++ + GP PG +Y D R+ + L+ G V+RHL+DGD
Sbjct: 396 IERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDF 455
Query: 323 VLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA 382
VLFNRQPSLH+MSIM HR RIMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E
Sbjct: 456 VLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 515
Query: 383 LLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF--SLMCCYMGDGMDR 440
L LM V + +P+ ++ QD L IT++DTF ++ F +LM DG
Sbjct: 516 LELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDG--- 572
Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
+P PAILKP LWTGKQ+F+++I N+ Y +T T GD ++RIE
Sbjct: 573 -KVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHADTETG----FITPGDTQVRIE 627
Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
EL++G L K TLG N L V+ + G A + L
Sbjct: 628 ------------RGELLAGTLCKKTLGTSNG-SLVHVIWEEVGPDAARKFLGHTQWLVNY 674
Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
W+ +GF+IGI D +K + IS I+++ +L +PG T E
Sbjct: 675 WLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFE 734
Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
+ +LN+ R+DAG + SL N+ M GSKGS INISQM ACVGQQ+V G+R
Sbjct: 735 NRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 794
Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
P GF R+LPHF + P ++GFV NS+ GL+ EFFFH MGGREGL+DTAVKT++TG
Sbjct: 795 PFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 854
Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL-----NFDR 795
Y+ RRL+KA+ED+ ++YD +VRN+ G ++QFLYG+DGMD +E + + L FDR
Sbjct: 855 YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDR 914
Query: 796 LLMKVKATCPPAGQRYLSPQQ------VSEIVEKQLAAYGK----------------ESC 833
K + YLS + + E+ + A Y K +S
Sbjct: 915 TF-KYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDST 973
Query: 834 SEAFLNSLRKFFEGQQD-KLD-KKIKFVEDIGWDDKSQILEEVTHKTSGI------TEKQ 885
+N R + Q+ K+D +KI + + D L+E G +K
Sbjct: 974 WPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDDALSVEAQKN 1033
Query: 886 LEVFI----------QTCFSRYRVKRVEAGTAIGAIGA---QSIGEPG------------ 920
+F + Y++ R IG I + QS+ PG
Sbjct: 1034 ATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIG 1093
Query: 921 ---TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAEL--ECNDNENAARV 975
TQMTL TFH+AGV++ N+T GVPR++EIIN AKRI TP ++ L E + ++ A+
Sbjct: 1094 EPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLTPEASKSKEGAKT 1153
Query: 976 VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIK 1035
V+ +E T L V ++ ++ S +I D E ++ + + D+ + I +P +
Sbjct: 1154 VQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDEDVSPDKI--SPWLL 1211
Query: 1036 LKQQHIKVLDFRKLEIFPPVDKSKIHFE-------------------------------- 1063
+ + +++ +KL + +K + F+
Sbjct: 1212 RIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQ 1271
Query: 1064 ---------LYSLK-NVLPMVIVKGIKTVERVVIAEKEKEKRKVKENG---EKKKYRLLV 1110
L ++ N+L + ++GI + +V I K+ K + E G +++ L
Sbjct: 1272 DESAEDDVFLKKIESNMLTEMALRGIPDINKVFI--KQVRKSRFDEEGGFKTSEEWMLDT 1329
Query: 1111 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1170
EG L AVM E +D +T SNH+ E+ + LGIEA R ++DE+ + G ++ RH+
Sbjct: 1330 EGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1389
Query: 1171 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1230
+L D MT+RG ++ ITR GI + D LM SFE+T D L +A+ D + GV+E I
Sbjct: 1390 AILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENI 1449
Query: 1231 IMGIPMPLGTGILKIRQRD 1249
++G P+GTG ++ D
Sbjct: 1450 MLGQLAPIGTGDCELYLND 1468
>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO21 PE=1
SV=2
Length = 1733
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/1273 (34%), Positives = 662/1273 (52%), Gaps = 142/1273 (11%)
Query: 85 ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
+L+ +L +FK ++ D L +E RPE +I+T + VPP +RPS+ + SQ E+
Sbjct: 201 VLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGED 260
Query: 142 DITERLKRIIQTNASLQQELVEANSA-FKSLAGWETL-QVEVAQYINSDVRGVPFSMQVA 199
D+T +L I++ N SL E +E N A ++ E+L Q VA Y+++D+ G P ++Q +
Sbjct: 261 DLTFKLADILKANISL--ETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKS 318
Query: 200 -RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPE 258
RP+ RLKGK+GR RGNL GKRV+++ RTVIS DPNL++ +V +P +A+ LTYPE
Sbjct: 319 GRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPE 378
Query: 259 RVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLE 318
V+ +NI++L Q ++NGP+++PGA+ + D R+ + ++L+ G V+RH+
Sbjct: 379 VVTPYNIDRLTQLVRNGPNEHPGAKYV-IRDSGDRIDLRYSKRAGDIQLQYGWKVERHIM 437
Query: 319 DGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 378
D D VLFNRQPSLH+MS+M HR +++P+ T R N SV +PYNADFDGDEMN+HVPQ+EE
Sbjct: 438 DNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 497
Query: 379 RTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGM 438
R E L V + +P++ + + QD L +T +DTF + M ++ D
Sbjct: 498 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPD-W 556
Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
D V +PTPAI+KP LW+GKQ+ SV I +++ + DE
Sbjct: 557 DGV-IPTPAIIKPKPLWSGKQILSVAIPNGIHLQRF-------------------DEGTT 596
Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
+ + P D + + ++I G + K T+G+ N GL V+ R+ G + + K+
Sbjct: 597 L--LSPKDNGMLIIDGQIIFGVVEKKTVGSSNG-GLIHVVTREKGPQVCAKLFGNIQKVV 653
Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
W+ ++GFS GI D + + I+E + KE L K G ++
Sbjct: 654 NFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRES 713
Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
E + LN R+ AG+ +L N+ M GSKGS INI+QM ACVGQQSV G+
Sbjct: 714 FEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGK 773
Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
R GF+DR+LPHF + P +KGFV NS+ GL+ EFFFH MGGREGL+DTAVKTA+
Sbjct: 774 RIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833
Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS-----GEPLNF 793
TGY+ RRL+KALED+ + YDN+ RN+ G ++QF+YG+DGMD A++E +S G F
Sbjct: 834 TGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAF 893
Query: 794 DRL----LMKVKATCPP----AGQRYLSPQQVSEIVEKQLAAYGKES--CSEAFLN---- 839
++ L+ T P +G L ++ +++++ K+ E F++
Sbjct: 894 EKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEAN 953
Query: 840 -----SLRKFFEGQQ-----DKLDKKIKFVEDI--GWDDKSQILEEVTHKTSGITEKQLE 887
++R+ + Q D ++DI G D + L + K I Q +
Sbjct: 954 WPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRD 1013
Query: 888 VFIQTC------------FSRYRVKRVEAGTAIGAIGAQ------------------SIG 917
C YR+ + + I AQ SIG
Sbjct: 1014 AVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIG 1073
Query: 918 EPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECND--NENAARV 975
EP TQMTL TFHFAGVAS +T GVPR+KEI+N AK + TP +T LE ++ A++
Sbjct: 1074 EPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKL 1133
Query: 976 VKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ---------------------- 1013
++ IE T L V + +I S VI D E IQ
Sbjct: 1134 IRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLL 1193
Query: 1014 ----DAHLCINADI----VKESIVQTPKIKL----KQQHIKVLDFRKLEIFP-PVDKSKI 1060
D + D+ V E I QT K L + + + L R + P +D
Sbjct: 1194 RLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETE 1253
Query: 1061 HFELYSLKNV----LPMVIVKGIKTVERVVIAEKEKEKRKVK----ENGEKKKYRLLVEG 1112
E + LK + L + ++G++ +ERVV+ K RKV E ++ ++ L +G
Sbjct: 1254 AEEDHMLKKIENTMLENITLRGVENIERVVMM---KYDRKVPSPTGEYVKEPEWVLETDG 1310
Query: 1113 TGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMML 1172
L VM GID + +N ++ + LGIEA R + E+ + + G ++ RHM L
Sbjct: 1311 VNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMAL 1370
Query: 1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232
L D+MT +G + +TR G + + LM SFE+T + LF A + D GVSE +I+
Sbjct: 1371 LVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVIL 1430
Query: 1233 GIPMPLGTGILKI 1245
G P+GTG +
Sbjct: 1431 GQMAPIGTGAFDV 1443
>sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB1 PE=3 SV=2
Length = 1745
Score = 622 bits (1603), Expect = e-177, Method: Compositional matrix adjust.
Identities = 440/1291 (34%), Positives = 668/1291 (51%), Gaps = 155/1291 (12%)
Query: 85 ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
I++ +L +FK ++ D L +E RPE +++T + VPP +RPS+ + SQ E+
Sbjct: 201 IISAEEILNVFKHISPEDSWRLGFNEDFSRPEWMLLTVLPVPPPPVRPSISFNESQRGED 260
Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
D+T +L I++ N ++Q+ + + LQ VA Y+++D+ G P ++Q + R
Sbjct: 261 DLTYKLGDILKANINVQRLEINGSPQHVIQESESLLQFHVATYMDNDIAGQPQAVQKSGR 320
Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
P+ RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +P +A+ LTYPE V
Sbjct: 321 PIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVV 380
Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
+ +NI++L Q ++NGP+++PGA+ + +G R+ + ++L+ G V+RH+ D
Sbjct: 381 TPYNIDRLTQLVRNGPNEHPGAKYVIRDNGD-RIDLRYSKRAGDIQLQYGWKVERHIMDD 439
Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
D VLFNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ+EE R
Sbjct: 440 DPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRA 499
Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
E L V + +P++ + + QD L +T +DTF + M ++ D D
Sbjct: 500 ELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLYWIPD-WDG 558
Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
V +PTP ILKP LW+GKQL S+ I +++ + T TY
Sbjct: 559 V-IPTPTILKPKPLWSGKQLLSMAIPSGIHLQRFDEGT----TY---------------- 597
Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
+ P D + + ++I G + K T+G+ + GL V+ R+ G + + K+
Sbjct: 598 -LSPKDNGMLIIDGQIIFGVVDKKTVGSSSG-GLIHVVTREKGPEVCAKLFGNIQKVVNY 655
Query: 561 WIGNHGFSIGIDDVQPKKELSDKKG-KLISENYEVCNVKI----KEYNEGKLQLKPGCDA 615
W+ ++GFSIGI D ++D+K + I++ + K+ KE L K G
Sbjct: 656 WLLHNGFSIGIGDT-----IADEKTMREITDAIALAKKKVEEVTKEAQANLLTAKHGMTL 710
Query: 616 AQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 675
++ E + LN R+ AG++ +L N+ M GSKGS INI+QM ACVGQQSV
Sbjct: 711 RESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSV 770
Query: 676 GGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVK 735
G+R GF DR+LPHF + P +KGFV NS+ GL+ EFFFH MGGREGL+DTAVK
Sbjct: 771 EGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 830
Query: 736 TADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKS-----GEP 790
TA+TGY+ RRL+KALED+ + YD + RN+ G I+QF+YG+DGMD A++E +S G
Sbjct: 831 TAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMDAAHIEKQSIDTIPGSD 890
Query: 791 LNFDR-----LLMKVKATCP---PAGQRYLSPQQVSEIVE---KQLAAYGKESCSEAFLN 839
L F++ LL A P +G + ++ +++ KQL + + F++
Sbjct: 891 LAFEKRYRIDLLNPNYALDPNLLESGTEIVGDLKLQNLLDEEYKQLVQ-DRHFLRKIFMD 949
Query: 840 ---------SLRKFFEGQQDKLDKKIKFVEDIGWDD-----------------KSQILEE 873
++R+ + Q D+ D KSQIL+E
Sbjct: 950 GEHNWPLPVNIRRIIQNAQQTFRIDSTKPTDLSIQDVVQGVRGLQERLLVLRGKSQILQE 1009
Query: 874 VTHKTSGITEKQLEVFIQT--CFSRYRVKRVEAGTAIGAIGAQ---SIGEPG-------- 920
+ L + T + YR+ + + I AQ SI PG
Sbjct: 1010 AQENAITLFCCLLRSRLATRRVITEYRLTKQTFEWVLNNIEAQFLRSIVHPGEMVGVLAA 1069
Query: 921 -------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECN--DNEN 971
TQMTL TFHFAGVAS +T GVPR+KEI+N AK + TP +T LE + ++
Sbjct: 1070 QSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEESYATDQE 1129
Query: 972 AARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIV-Q 1030
A++++ IE T L V + +I +S VI D E IQ H + + + S+ Q
Sbjct: 1130 KAKLIRSAIEHTTLKSVTVASEIYYDPDPSSTVIEEDEEIIQ-LHFSLMDEETEASLKHQ 1188
Query: 1031 TP---------------KIKLKQQHIKVLDFRKLEIF---------------------PP 1054
+P + + Q K+ + K ++F
Sbjct: 1189 SPWLLRLELDRVAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVVRDPKT 1248
Query: 1055 VDKSKIHFELYSLKNV----LPMVIVKGIKTVERVVIAEKEKEKRKV-KENGEKKK---Y 1106
+D E + LK + L + ++G++ + RVV+ K RKV E GE K +
Sbjct: 1249 LDAEAEAEEDHMLKKIENTMLESITLRGVQDITRVVMM---KYDRKVPSETGEYHKIPEW 1305
Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
L +G L VM G+D + +N ++ LGIEA R + E+ + + G ++
Sbjct: 1306 VLETDGVNLSEVMSVPGVDPTRIYTNSFIDIMNVLGIEAGRAALYKEVYNVIASDGSYVN 1365
Query: 1167 KRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGV 1226
RHM LL D+MT +G ++ +TR G + D LM SFE+T + LF A D GV
Sbjct: 1366 YRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDDCSGV 1425
Query: 1227 SECIIMGIPMPLGTGILKIRQRDAVPPMLKY 1257
SE +I+G P+GTG + D ++KY
Sbjct: 1426 SENVILGQMAPIGTGSFDVMIDDE--SLIKY 1454
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III subunit RPC1 OS=Plasmodium falciparum
PE=3 SV=1
Length = 2339
Score = 591 bits (1524), Expect = e-167, Method: Compositional matrix adjust.
Identities = 277/498 (55%), Positives = 359/498 (72%), Gaps = 9/498 (1%)
Query: 300 RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 359
+N + L G +V+RH+ DGD+VLFNRQPSLHRMSIMCH+A+IM ++T RFNE VC+PY
Sbjct: 549 KNHVIQNLNIGDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIMDFKTFRFNECVCSPY 608
Query: 360 NADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 419
NADFDGDEMN+ VPQTEEAR EAL LM V++NL TPKNGE+++A TQDFL++S++IT KD
Sbjct: 609 NADFDGDEMNLDVPQTEEARAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKD 668
Query: 420 TFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTV 479
TF DR F L+C Y D ++LP PAILKP ELWTGKQL SVLI+P+ +N +
Sbjct: 669 TFLDRDTFCLLCSYFSDASLYIELPIPAILKPKELWTGKQLISVLIKPNKKENTIINFEI 728
Query: 480 KEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLL 539
+E+ YSNK GD ++ +C ND +V F SELI G LGK LG+ K GL+ L+
Sbjct: 729 QEREYSNKF----GD----LKHLCLNDSYVCFYKSELICGSLGKKVLGSS-KYGLFYYLI 779
Query: 540 RDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKI 599
+H MNRL+KL++R+ N G +IGIDDV+P + L++KK L+ + YE N +I
Sbjct: 780 HHNSSHIALKIMNRLSKLTSRYFSNKGMTIGIDDVRPSQTLTEKKKDLLLKGYEKVNNEI 839
Query: 600 KEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGS 659
YNE K+Q++PGC +TLE + IL+ +R DAGK C L + N PLIM G+KG+
Sbjct: 840 ILYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCNQYLHYLNKPLIMFNSGAKGA 899
Query: 660 PINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFF 719
INI+QM+ACVGQQ+V G+R NGFI+R+LPHF K+ ++GFV NSFY+GLS TEFF
Sbjct: 900 LINIAQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFF 959
Query: 720 FHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
FHTM GREGLVDTAVKTA+TGYM RRL+KALEDLSI YD SVR+ IVQF+YGDD ++
Sbjct: 960 FHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSCDKQIVQFIYGDDALN 1019
Query: 780 PANMEGKSGEPLNFDRLL 797
P+ ++ + FD++
Sbjct: 1020 PSYIDNNNTYLDQFDKVF 1037
Score = 183 bits (465), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 113/284 (39%), Positives = 160/284 (56%), Gaps = 23/284 (8%)
Query: 7 EALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFA 66
++ K L K I+ C K KC CG G++KK + SL +F
Sbjct: 154 DSFYKKHLFKRILNNCK----KVNKCYICGNPQGVIKKIIK------------PSLDQFM 197
Query: 67 --SAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPP 124
I KE+ + + LN + VL LFK + ++L + E PEKLIIT + VPP
Sbjct: 198 KLKHILKVKENGKMI-IKEEDLNSLYVLKLFKNINPYHVKLLNI-ENPEKLIITALLVPP 255
Query: 125 IAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQY 184
IRPSVI+D + E+D+T L I Q N ++ + + L E LQ+++ ++
Sbjct: 256 NTIRPSVIIDEHGTAEDDLTCILSEITQLNNTIYNQCTNGYQTNQFLGNVEFLQLQITRF 315
Query: 185 INSD---VRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKI 241
INSD V + + +++P G QRLKGK+GRFR NLSGKRV+++ RTVISPDPN+ I
Sbjct: 316 INSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRTVISPDPNISI 375
Query: 242 TEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI 285
EV IP +A LTYPE V+ +NI+KL+ I+NG +K+PGA I
Sbjct: 376 DEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPGANYI 419
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 136/223 (60%), Gaps = 4/223 (1%)
Query: 874 VTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGV 933
+ H S I KQL +FI +Y G A+G+I AQSIGEPGTQMTLKTFHFAGV
Sbjct: 1749 IIHDYSFINLKQLYLFIFFNIYKYFKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFAGV 1808
Query: 934 ASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIK 993
ASMN+T GVPRIKEIIN + I TPI+ LE NDN N A ++K ++EKT + + IK
Sbjct: 1809 ASMNVTLGVPRIKEIINASNSIQTPILNIPLEVNDNYNFALMMKSKLEKTTIRDICMYIK 1868
Query: 994 IVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTP---KIKLKQQHIKVLDFRKLE 1050
TSR + + + E IQ L INA +K+ I++ KIK+ + HI V++ KL
Sbjct: 1869 EDYTSRGVFLSVKFNEELIQKLFLNINAYNIKDIILKQSHINKIKINKIHINVINKYKLH 1928
Query: 1051 IFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKE 1093
I D+ I F++ SLK L +++ G K ++R +I +++ E
Sbjct: 1929 ISLKNDEF-IFFQMESLKKGLLDLLIYGDKDIKRCIIKKEDIE 1970
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/140 (52%), Positives = 98/140 (70%)
Query: 1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
Y +LVEG L V+G EG+D SNH+ V Q LGIEAARI II+EI + ++A+ + I
Sbjct: 2173 YSILVEGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSIDI 2232
Query: 1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
D RH+MLLAD+M F G++LGI RFGIQK +S LMLASFE+T +HLF +S D I
Sbjct: 2233 DIRHIMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEINN 2292
Query: 1226 VSECIIMGIPMPLGTGILKI 1245
+SE II+G +P+GTG ++
Sbjct: 2293 ISESIIVGKNIPIGTGAFQL 2312
>sp|P31813|RPOA1_THECE DNA-directed RNA polymerase subunit A' OS=Thermococcus celer
GN=rpoA1 PE=3 SV=1
Length = 905
Score = 574 bits (1479), Expect = e-162, Method: Compositional matrix adjust.
Identities = 328/808 (40%), Positives = 470/808 (58%), Gaps = 60/808 (7%)
Query: 11 KTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAIT 70
K L+K I KK A + + CP CG +K +R V L++
Sbjct: 130 KDRLIKEIHKK----AKERMVCPHCGSPQFPIK---------FERPTVYWELRKDEEG-- 174
Query: 71 HTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAI 127
N + + P V +++ D D ++ L RPE +++T + VPP+ +
Sbjct: 175 ---------NEYKHRMMPSEVRDRLEKIPDRDLPLIGLDAEKARPEWMVLTVLPVPPVTM 225
Query: 128 RPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINS 187
RPS+ ++ E+D+T +L II+ N L+ + W+ LQ V YIN+
Sbjct: 226 RPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINN 285
Query: 188 DVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAI 246
+ G+P + + RPL QRLKGK+GRFRGNLSGKRV ++ RTVISPDP + I EV +
Sbjct: 286 ETSGIPPAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGV 345
Query: 247 PIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVE 306
P+ +A LT PE+V++ N EKLR+ + NGP+KYPGA + P+G L +A +
Sbjct: 346 PMAIAMELTVPEKVTEFNFEKLRKMVLNGPEKYPGANYVIDPEGRRIRLMENNLETVAEK 405
Query: 307 LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 366
L G V+RHL DGDVVLFNRQPSLHRMSIM HR R+MP+RT R N SVC PYNADFDGD
Sbjct: 406 LDIGWTVERHLLDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLSVCPPYNADFDGD 465
Query: 367 EMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 426
EMN+HVPQTEEA+ EA +LM VQN++ +P+ G L+A QD ++ +L+TR+ +++R
Sbjct: 466 EMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFERTE 525
Query: 427 FSLMCCYMGDGMDRVDLPTP-AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYS 485
M + G +DR LP P + VELW+GK +FS+L+ +LT+ Y
Sbjct: 526 VEQMLMFAGVDVDR--LPEPDKVENGVELWSGKTIFSLLLPK--------DLTI---WYR 572
Query: 486 NKLI----RTEGDEEIRIETMCPN---------DGFVYFRNSELISGQLGKATLGNGNKD 532
NKL R E E++ E + P+ DGF Y N +L+SG + K G +D
Sbjct: 573 NKLCDEPGRCEALEKLIEEKLIPDEEEVRALAYDGFTYILNGKLLSGAIDKTAY--GRED 630
Query: 533 G-LYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISEN 591
G L +++R+YG ++++ KL+ I + GF+ IDD E D+ ++I E
Sbjct: 631 GKLLDIIVREYGVERARQFLDQVTKLAIWVITHKGFTTAIDDEDLPTEALDRIREIIREA 690
Query: 592 YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIM 651
E N I+ Y G+L+ PG +TLE+ I L R++AGK L N +IM
Sbjct: 691 EERVNRLIEAYRNGELEPIPGKTLEETLESKIMAALAEARDNAGKVAERYLGMSNHAVIM 750
Query: 652 SQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYS 711
++ G++G +NI+QM A +GQQS+ G+R G+ +R L HF A+GFV NS+ S
Sbjct: 751 AKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRERVLTHFKPGDLGARARGFVINSYKS 810
Query: 712 GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQF 771
GL+ E+FFH MGGREGLVDTAV+TA +GYM RRLI AL+DL ++YD +VR+ G IVQF
Sbjct: 811 GLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVEYDGTVRDPTGIIVQF 870
Query: 772 LYGDDGMDPANMEGKSGEPLNFDRLLMK 799
YG+DG+DP M G+ ++ +R++++
Sbjct: 871 RYGEDGIDP--MRSWKGKTIDVNRVVLR 896
>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium
discoideum GN=polr2a PE=2 SV=2
Length = 1727
Score = 566 bits (1459), Expect = e-160, Method: Compositional matrix adjust.
Identities = 362/1014 (35%), Positives = 550/1014 (54%), Gaps = 116/1014 (11%)
Query: 85 ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
+L+ VL + KR+ D D + ++ R + +I T + VPP +RPS++MD S E+
Sbjct: 206 VLSAERVLNILKRIKDEDSRAMGINPDWARADWMIATVLPVPPPPVRPSIMMDTSTRGED 265
Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
D+T +L I++ N LQ++ A + LQ VA Y+++++ G+P + Q + R
Sbjct: 266 DLTHKLADIVKANRELQRQEKNGAPAHIIAEATQFLQFHVATYVDNEIPGLPQAQQRSGR 325
Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
PL QRLKGK+GR RGNL GKRV+++ RTVI+ DPNL I +V +P +A LTYPE V
Sbjct: 326 PLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETV 385
Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
+ NI+K+R+ I+NGP ++PGA+ I DGT L +F +++ L+ G V+RH+ D
Sbjct: 386 TPFNIDKMRELIRNGPSEHPGAKYIIREDGTRFDL--RFVKKVSDTHLECGYKVERHIND 443
Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
GDVV+FNRQPSLH+MS+M HR ++MP+ T R N SV +PYNADFDGDEMN+HVPQT E R
Sbjct: 444 GDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLETR 503
Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCYMGDG 437
E + +M V + +P++ ++ QD L S L T++D F ++ LM DG
Sbjct: 504 AEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNILMWLPSWDG 563
Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
+P PAILKP +LWTGKQLFS++I P N+ + + T D+E
Sbjct: 564 ----KVPPPAILKPKQLWTGKQLFSLII-PDINLIRFTS--------------THNDKE- 603
Query: 498 RIETMCPN-----DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMN 552
PN D V EL++G L K +LG N + V++ ++G ++
Sbjct: 604 ------PNECSAGDTRVIIERGELLAGILCKRSLGAANG-SIIHVVMNEHGHDTCRLFID 656
Query: 553 RLAKLSARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
+ + W+ N GF++GI D + ++ + S +V + IK N+ + + +P
Sbjct: 657 QTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNK-QFECQP 715
Query: 612 GCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVG 671
G +T E + +LN+ R+ AG + SL N+ M GSKGS INISQM+ACVG
Sbjct: 716 GKSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMMACVG 775
Query: 672 QQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVD 731
QQ+V G+R P GF R+LPHF + P ++GFV NS+ GL+ EFFFH MGGREGL+D
Sbjct: 776 QQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 835
Query: 732 TAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPL 791
TAVKT++TGY+ RRL+KA+ED+SI+YD +VRN+ G ++QF YG+DG+D +E +S + L
Sbjct: 836 TAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFVENQSIDSL 895
Query: 792 NFDRL----LMKVKATCPPAGQRYLSPQQVSEIVEKQLA------AYGKESCSEAFLN-- 839
D + + + P G ++ P + + L + + + L
Sbjct: 896 RKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVRNDSLTRDTLEKEFERIKSDRSLLRNE 955
Query: 840 -------------SLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHK-----TSGI 881
+LR+ Q + I+ V D+ +E++ + T+
Sbjct: 956 IIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIATADT 1015
Query: 882 TEKQ-----------------LEVFIQTCFSRYRVK---RVEAGTAIGAIGA------QS 915
TE + +++ F+ RV R+ + G Q+
Sbjct: 1016 TEDDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIESKFLQA 1075
Query: 916 IGEPG---------------TQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPII 960
+ PG TQMTL TFH+AGV+S N+T GVPR+KEIIN AK++ TP +
Sbjct: 1076 LAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQVKTPSL 1135
Query: 961 TAELECN--DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
T L+ + + + A++VK ++E T L V + +I + +I+ D E +
Sbjct: 1136 TIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAEFV 1189
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 116/198 (58%), Gaps = 5/198 (2%)
Query: 1069 NVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGE---KKKYRLLVEGTGLQAVMGAEGID 1125
N+L ++++GIK +++V + +K KV ENG ++++ L +G L VM +D
Sbjct: 1283 NMLSEMVLRGIKGIKKVFMRTDDKIP-KVTENGGFGVREEWILDTDGVSLLEVMSHPDVD 1341
Query: 1126 GCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLG 1185
+T SN I E+ Q LGIEA R ++ E+ + G ++ RH+ +LAD+MT+RG ++
Sbjct: 1342 HTRTTSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAILADVMTYRGHLMA 1401
Query: 1186 ITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
ITR GI +++ LM SFE+T + L +A++ D ++GV+E II+G PLGTG ++
Sbjct: 1402 ITRHGINRVETGPLMRCSFEETVEILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEV 1461
Query: 1246 -RQRDAVPPMLKYGAPDP 1262
+D + P+P
Sbjct: 1462 FLNQDMIKNAHSIALPEP 1479
>sp|P11512|RPOA1_SULAC DNA-directed RNA polymerase subunit A' OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoA1 PE=3 SV=2
Length = 880
Score = 556 bits (1433), Expect = e-157, Method: Compositional matrix adjust.
Identities = 314/800 (39%), Positives = 458/800 (57%), Gaps = 55/800 (6%)
Query: 9 LRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASA 68
LR + +V+ ++ K ++CP CG ++F
Sbjct: 123 LRWPSAARRLVEYIKKISIKNLECPHCGE-------------------------KQFKIK 157
Query: 69 ITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPI 125
+ N + L+P + +R+ D+D E+L S RPE +I+T + VPPI
Sbjct: 158 LEKPYNFNEERNGSIVKLSPSEIRDRLERIPDSDVELLGYDPKSSRPEWMILTVLPVPPI 217
Query: 126 AIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYI 185
IRPS+ ++ E+D+T +L II+ N L++ + W+ LQ VA Y
Sbjct: 218 TIRPSITIESGIRAEDDLTHKLVDIIRLNERLKESIEAGAPQLIIEDLWDLLQYHVATYF 277
Query: 186 NSDVRGVPFS-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEV 244
++++ G+P + + RPL QRLKGK+GRFRGNLSGKRV+++ RTVISPDPNL I EV
Sbjct: 278 DNEIPGLPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNLSIDEV 337
Query: 245 AIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQL 303
IP +AR+LT PERV++ NIE++RQ I NGPDK+PGA + PDG L Y K R +L
Sbjct: 338 GIPYTIARMLTVPERVTNINIERIRQYIINGPDKWPGANYVIKPDGRRIDLRYVKDRKEL 397
Query: 304 AVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADF 363
A + +G +V+RHL DGDVVLFNRQPSLHR+S+M H+ R++P RT R N C PYNADF
Sbjct: 398 ASSITAGYVVERHLVDGDVVLFNRQPSLHRISMMAHKVRVLPGRTFRLNLLDCPPYNADF 457
Query: 364 DGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY- 422
DGDEMN+HVPQ+EEA EA LM V N+ TP+ G ++ QD+++ ++L++ K T
Sbjct: 458 DGDEMNLHVPQSEEAIAEARELMLVHKNIITPRYGGPIIGGGQDYISGAYLLSVKTTLLT 517
Query: 423 --DRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVK 480
+ A + ++G+ L PAIL P +TGKQ+ S+ + N N++
Sbjct: 518 VEEVATILGVTDFVGE------LGEPAILAPKPYYTGKQVISLFLPKDFNFHGPANIS-- 569
Query: 481 EKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLR 540
K R DE +CP+D F+ +N L+ G K +GN + + +R
Sbjct: 570 ------KGPRACKDE------ICPHDSFIVIKNGLLLEGVFDKKAIGNQQPESMLHWSIR 617
Query: 541 DYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIK 600
+YG M+ + K+ R++ GF++ ++D+ E ++ I E Y + I+
Sbjct: 618 EYGTEYGKWLMDNVFKMFIRFLEMRGFTMTLEDITIPDEAQNEITTKIKEGYSQVDEYIR 677
Query: 601 EYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSP 660
++NEG+L+ PG ++LE+ I D L+++R+ AG+ L N+ IM+ G++GS
Sbjct: 678 KFNEGQLEPIPGRTIEESLESYILDTLDKLRKVAGEIATKYLDPFNNVYIMAITGARGSE 737
Query: 661 INISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFF 720
+NI+QM A +GQQSV G R G+ +R+L F P A+GFV NSF GLS E FF
Sbjct: 738 LNITQMTALLGQQSVRGERIRRGYRERTLSLFKYGDIAPEARGFVKNSFMRGLSPYEMFF 797
Query: 721 HTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDP 780
H GGREGLVDTAVKT+ +GYM RRLI AL DL I+YD +VR+ G IVQ +YGDD + P
Sbjct: 798 HAAGGREGLVDTAVKTSQSGYMQRRLINALSDLRIEYDGTVRSLYGDIVQVVYGDDAVHP 857
Query: 781 ANMEGKSGEPLNFDRLLMKV 800
M + +N +R++ +V
Sbjct: 858 --MYSAHSKSVNVNRVIERV 875
>sp|Q980R2|RPOA1_SULSO DNA-directed RNA polymerase subunit A' OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoA1
PE=1 SV=1
Length = 880
Score = 534 bits (1376), Expect = e-150, Method: Compositional matrix adjust.
Identities = 294/724 (40%), Positives = 430/724 (59%), Gaps = 32/724 (4%)
Query: 86 LNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
L P ++ +++ D+D E+L + RPE +I+T + VPPI IRPS++++ E+D
Sbjct: 175 LTPSDIRERLEKIPDSDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDD 234
Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
+T +L I++ N L++ + W+ LQ VA Y ++++ G+P S + RP
Sbjct: 235 LTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRP 294
Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
L QRLKGK+GRFRGNLSGKRV+++ RTVISPDPN+ I EV +P +A+ LT PER++
Sbjct: 295 LRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIAKTLTVPERIT 354
Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDG 320
NIEKLRQ + NGPDK+PGA + PDG L Y K R +LA L G I++RHL DG
Sbjct: 355 PWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYIIERHLIDG 414
Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
D+VLFNRQPSLHR+S+M HR R++ T R N VC PYNADFDGDEMN+HVPQ+EEA
Sbjct: 415 DIVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIA 474
Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
EA +M V N+ TP+ G ++ + QD+++ ++L+T K T + + +G +
Sbjct: 475 EAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQI---LGVADVK 531
Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
+DL PAIL P E +TGKQ+ S + N N++ + N+
Sbjct: 532 IDLGEPAILAPREYYTGKQVISAFLPKDFNFHGQANVSSGPRLCKNE------------- 578
Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
CP+D +V +N L+ G K +GN + + L+++Y M+ L ++ R
Sbjct: 579 -DCPHDSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIR 637
Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVK----IKEYNEGKLQLKPGCDAA 616
++ GF++ ++DV L D K I + V+ I++Y G+L+ PG
Sbjct: 638 FVELQGFTMRLEDVS----LGDDVKKEIYNEIDRAKVEVDNLIQKYKNGELEPIPGRTLE 693
Query: 617 QTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVG 676
++LE I D L+++R AG L N +M++ G++GS +NI+QM A +GQQSV
Sbjct: 694 ESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLGQQSVR 753
Query: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKT 736
G R G++ R+LPHF P A+GF+ +SF +GL TE FFH GGREGLVDTAV+T
Sbjct: 754 GERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRT 813
Query: 737 ADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRL 796
+ +GYM RRLI AL DL +YD +VR+ G +VQ YGDDG+ P M G+ ++ +R+
Sbjct: 814 SQSGYMQRRLINALSDLRAEYDGTVRSLYGEVVQVAYGDDGVFP--MYSAHGKTVDVNRI 871
Query: 797 LMKV 800
+V
Sbjct: 872 FERV 875
>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb1 PE=1 SV=1
Length = 1752
Score = 517 bits (1331), Expect = e-145, Method: Compositional matrix adjust.
Identities = 292/721 (40%), Positives = 433/721 (60%), Gaps = 34/721 (4%)
Query: 85 ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
+L+P+ V +F ++ D L L+E RP+ +IIT + VPP ++RPS+ +DG+ E+
Sbjct: 207 LLSPLEVHTIFTHISSEDLAHLGLNEQYARPDWMIITVLPVPPPSVRPSISVDGTSRGED 266
Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQ-VAR 200
D+T +L II+ NA++++ E A + LQ VA Y+++++ G P ++Q R
Sbjct: 267 DLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQLLQFHVATYMDNEIAGQPQALQKSGR 326
Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
PL RLKGK+GR RGNL GKRV+++ RTVI+ DPNL + E+ +P +A+ LTYPE V
Sbjct: 327 PLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETV 386
Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDG 320
+ +NI +L++ ++NGPD++PGA+ I D R+ + + L+ G V+RH+ DG
Sbjct: 387 TPYNIYQLQELVRNGPDEHPGAKYI-IRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDG 445
Query: 321 DVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEART 380
DVV+FNRQPSLH+MS+M HR R+MP+ T R N SV +PYNADFDGDEMNMHVPQ+EE R
Sbjct: 446 DVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRA 505
Query: 381 EALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDR 440
E + V + +P++ + ++ QD L + +D F R A + ++ D D
Sbjct: 506 EIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLWVPD-WDG 564
Query: 441 VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIE 500
+ LP P ILKP LWTGKQ+ S++I N LIR + + +
Sbjct: 565 I-LPPPVILKPKVLWTGKQILSLIIPKGIN-----------------LIRDDDKQSLS-- 604
Query: 501 TMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSAR 560
P D + N E+I G + K T+G ++ GL + ++ G G N + ++
Sbjct: 605 --NPTDSGMLIENGEIIYGVVDKKTVG-ASQGGLVHTIWKEKGPEICKGFFNGIQRVVNY 661
Query: 561 WIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLE 620
W+ ++GFSIGI D + + + + E I++ +L+ +PG ++ E
Sbjct: 662 WLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFE 721
Query: 621 AVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 680
A ++ ILN+ R++AG++ SL N+ M GSKGS INISQM ACVGQQ V G+R
Sbjct: 722 AKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRI 781
Query: 681 PNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTG 740
P GF R+LPHFP+ P ++GF+ NS+ GL+ EFFFH M GREGL+DTAVKTA+TG
Sbjct: 782 PFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 841
Query: 741 YMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKV 800
Y+ RRL+KA+ED+ ++YD +VRNA G I+QF YG+DG+D +E + FD L +
Sbjct: 842 YIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQV-----FDSLRLST 896
Query: 801 K 801
K
Sbjct: 897 K 897
Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 130/399 (32%), Positives = 205/399 (51%), Gaps = 51/399 (12%)
Query: 895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
+R++ V G +G + AQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEI+N AK
Sbjct: 1054 ARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKN 1113
Query: 955 ISTPIITAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETI 1012
I TP +T L N + A+ V+ +IE T L V + +I VI D + +
Sbjct: 1114 IKTPSLTIYLMPWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFV 1173
Query: 1013 QDAHLCINADIVKESIV-QTPKI-KLKQQHIKVLDFRKLEIFPPVDKSKIHFE-----LY 1065
+ A I + V+E++ Q+P + +L+ K+LD +KL + K FE ++
Sbjct: 1174 E-AFFAIPDEEVEENLYKQSPWLLRLELDRAKMLD-KKLSMSDVAGKIAESFERDLFTIW 1231
Query: 1066 SLKNVLPMVI-------------------------------------VKGIKTVERVVIA 1088
S N ++I ++G+ + RV +
Sbjct: 1232 SEDNADKLIIRCRIIRDDDRKAEDDDNMIEEDVFLKTIEGHMLESISLRGVPNITRVYMM 1291
Query: 1089 EKEKEKRKVKENGEKK--KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAA 1146
E K R++++ ++ ++ L +G L M EG+D +T SN E+ Q LGIEA
Sbjct: 1292 E-HKIVRQIEDGTFERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEAT 1350
Query: 1147 RICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEK 1206
R ++ E+ ++ G ++ RH+ LL D+MT RG ++ ITR GI + + LM SFE+
Sbjct: 1351 RSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEE 1410
Query: 1207 TADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
T + L +A+ +G D +G+SE I++G P+GTG I
Sbjct: 1411 TVEILMDAAASGEKDDCKGISENIMLGQLAPMGTGAFDI 1449
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus
GN=Polr2a PE=1 SV=3
Length = 1970
Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust.
Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)
Query: 85 ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
+L+P V +FKR++D +C VL + R PE +I+T + VPP+++RP+V+M GS N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274
Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
D+T +L I++ N L++ +A + LQ VA +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334
Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
PL QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P +A +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394
Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
+ NI++L++ ++ G +YPGA+ I +G L +F + + + L++G V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452
Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512
Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
E L V + TP++ ++ QD LT+ T++D F +R + ++
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572
Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
+V P PAILKP LWTGKQ+FS++I H N +R + E + K I
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621
Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
P D V N ELI G L K +LG + L + + G T + + +
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676
Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
W+ G +IGI D + K D + + +V V K +N +L+ PG Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735
Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
T E + ILN R+ G + SL N+ M G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795
Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
+R P GF R+LPHF + P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855
Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
+TGY+ RRLIK++E + ++YD +VRN+ +VQ YG+DG+ +GE + F L
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906
Query: 798 MKVKATCPPAGQRY 811
AT P+ + +
Sbjct: 907 ----ATLKPSNKAF 916
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)
Query: 895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
S++ G +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133
Query: 955 ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
TP +T L +A R + R+E T L +V + I S V
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193
Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
+ LD + + D L CI D E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253
Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
+V +I Q+ +V+D ++F +S N+L + ++GI+
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303
Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
+ +V + + + +K + E+GE K ++ L +G L V+ + +D +T SN I
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363
Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
E+ LGIEA R + E+ + G ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423
Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
LM SFE+T D L A+ +G D ++GVSE I++G P GTG +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens
GN=POLR2A PE=1 SV=2
Length = 1970
Score = 508 bits (1307), Expect = e-142, Method: Compositional matrix adjust.
Identities = 292/734 (39%), Positives = 431/734 (58%), Gaps = 39/734 (5%)
Query: 85 ILNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
+L+P V +FKR++D +C VL + R PE +I+T + VPP+++RP+V+M GS N++
Sbjct: 215 LLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQD 274
Query: 142 DITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-R 200
D+T +L I++ N L++ +A + LQ VA +++++ G+P +MQ + R
Sbjct: 275 DLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 334
Query: 201 PLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERV 260
PL QRLKGK+GR RGNL GKRV+++ RTVI+PDPNL I +V +P +A +T+ E V
Sbjct: 335 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 394
Query: 261 SDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLA-VELKSGCIVDRHLED 319
+ NI++L++ ++ G +YPGA+ I +G L +F + + + L++G V+RH+ D
Sbjct: 395 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--RFHPKPSDLHLQTGYKVERHMCD 452
Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
GD+V+FNRQP+LH+MS+M HR RI+PW T R N SV PYNADFDGDEMN+H+PQ+ E R
Sbjct: 453 GDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETR 512
Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
E L V + TP++ ++ QD LT+ T++D F +R + ++
Sbjct: 513 AEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDG 572
Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
+V P PAILKP LWTGKQ+FS++I H N +R + E + K I
Sbjct: 573 KV--PQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI--------- 621
Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
P D V N ELI G L K +LG + L + + G T + + +
Sbjct: 622 ----SPGDTKVVVENGELIMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVI 676
Query: 559 ARWIGNHGFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
W+ G +IGI D + K D + + +V V K +N +L+ PG Q
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHN-NELEPTPGNTLRQ 735
Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
T E + ILN R+ G + SL N+ M G+KGS INISQ++A VGQQ+V G
Sbjct: 736 TFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795
Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
+R P GF R+LPHF + P ++GFV NS+ +GL+ TEFFFH MGGREGL+DTAVKTA
Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855
Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
+TGY+ RRLIK++E + ++YD +VRN+ +VQ YG+DG+ +GE + F L
Sbjct: 856 ETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL--------AGESVEFQNL- 906
Query: 798 MKVKATCPPAGQRY 811
AT P+ + +
Sbjct: 907 ----ATLKPSNKAF 916
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 69/410 (16%)
Query: 895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
S++ G +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KE+IN +K+
Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1133
Query: 955 ISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKIVMTSRLASIV-------- 1004
TP +T L +A R + R+E T L +V + I S V
Sbjct: 1134 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1193
Query: 1005 --------------------IALDMETIQDAHL------------------CINADIVKE 1026
+ LD + + D L CI D E
Sbjct: 1194 NVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253
Query: 1027 SIVQTPKI-----KLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1081
+V +I Q+ +V+D ++F +S N+L + ++GI+
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIES----------NMLTDMTLQGIEQ 1303
Query: 1082 VERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIF 1135
+ +V + + + +K + E+GE K ++ L +G L V+ + +D +T SN I
Sbjct: 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363
Query: 1136 EVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMD 1195
E+ LGIEA R + E+ + G ++ RH+ LL D MT RG ++ ITR G+ + D
Sbjct: 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423
Query: 1196 KSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
LM SFE+T D L A+ +G D ++GVSE I++G P GTG +
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 286/695 (41%), Positives = 416/695 (59%), Gaps = 24/695 (3%)
Query: 91 VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
VL +FK++TD D V+ + RPE +I T + VPP+A+RP+V+ GS N++D+T +L
Sbjct: 215 VLEVFKQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKL 274
Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
II+TN LQ+ +A LQ VA +++ + G+P + Q RPL
Sbjct: 275 SDIIKTNQQLQRNEANGAAAHVLTDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIK 334
Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
QRLKGK+GR RGNL GKRV+++ RTVI+ DPNL I V +P +A+ LT+PE V+ N++
Sbjct: 335 QRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVD 394
Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
KL++ + G +YPGA+ I +G ARV + L+ G V+RH++DGD+++FN
Sbjct: 395 KLQELVNRGDTQYPGAKYIIRENG-ARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFN 453
Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
RQP+LH+MS+M HR +I+PW T R N SV +PYNADFDGDEMN+H+PQ+ E R E +
Sbjct: 454 RQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIA 513
Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTP 446
V L TP+ + ++ QD L + ++T++D F D + Y+ +V P P
Sbjct: 514 MVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDIFIDWPFMMDLLMYLPTWDGKV--PQP 571
Query: 447 AILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 505
AILKP LWTGKQ+FS++I + N +R + E + K I + GD ++ IE
Sbjct: 572 AILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWI-SPGDTKVLIE----- 625
Query: 506 DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
+ EL+SG + T+G + L+ V L + G + + + + W+
Sbjct: 626 -------HGELLSGIVCSKTVGKSAGNLLHVVAL-ELGHEIAANFYSHIQTVINAWLLRE 677
Query: 566 GFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
G +IGI D + + D + + +V +V K +N+ L+ PG QT E +
Sbjct: 678 GHTIGIGDTIADQSTYLDIQNTIRKAKQDVVDVIEKAHND-DLEPTPGNTLRQTFENKVN 736
Query: 625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
ILN R+ G + SL N+ M GSKGS INISQ++ACVGQQ+V G+R P GF
Sbjct: 737 QILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGF 796
Query: 685 IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
R+LPHF + P +KGFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA+TGY+ R
Sbjct: 797 RHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 856
Query: 745 RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
RLIKA+E + + YD +VRN+ +VQ YG+DG+D
Sbjct: 857 RLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLD 891
Score = 166 bits (421), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 129/401 (32%), Positives = 195/401 (48%), Gaps = 52/401 (12%)
Query: 895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
+R++ + G +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN +K+
Sbjct: 1068 TRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQ 1127
Query: 955 ISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIA----- 1006
+ TP +T L D E A V+ ++E T L +V + I + VIA
Sbjct: 1128 LKTPSLTVFLTGAAAKDPEKAKDVL-CKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEW 1186
Query: 1007 -----------------------LDMETIQDAHLCIN--ADIVKESIVQTPKIKLKQQHI 1041
LD + + D L + AD + Q +
Sbjct: 1187 VSIFYEMPDHDLTRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGQDVHTIYTDDNA 1246
Query: 1042 KVLDFRKLEIF----------PPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEK 1090
+ L FR L I VDK + L ++ N+L + ++GI + +V + +
Sbjct: 1247 EKLVFR-LRIAGEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQP 1305
Query: 1091 EKEKRK----VKENGEKK--KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIE 1144
+ +K E G K + L +GT L V+ ID +T SN I E+ + LGIE
Sbjct: 1306 NTDDKKRIIITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIE 1365
Query: 1145 AARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASF 1204
A R I E++ + G ++ RH+ LL D+MT +G ++ ITR GI + + LM SF
Sbjct: 1366 AVRKSIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSF 1425
Query: 1205 EKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
E+T D L ASV+ D ++GVSE I++G GTG +
Sbjct: 1426 EETVDILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDL 1466
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
elegans GN=ama-1 PE=1 SV=3
Length = 1856
Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust.
Identities = 285/695 (41%), Positives = 416/695 (59%), Gaps = 24/695 (3%)
Query: 91 VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
VL +F+++TD D V+ + RPE +I T + VPP+A+RP+V+ GS N++D+T +L
Sbjct: 215 VLEVFQQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKL 274
Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
II+TN LQ+ +A LQ VA +++ + G+P + Q RPL
Sbjct: 275 SDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIK 334
Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
QRLKGK+GR RGNL GKRV+++ RTVI+ DPNL I V +P +A+ LT+PE V+ N++
Sbjct: 335 QRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVD 394
Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
KL++ + G +YPGA+ I +G ARV + L+ G V+RH++DGD+++FN
Sbjct: 395 KLQELVNRGDTQYPGAKYIIRENG-ARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFN 453
Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
RQP+LH+MS+M HR +I+PW T R N SV +PYNADFDGDEMN+H+PQ+ E R E +
Sbjct: 454 RQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIA 513
Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTP 446
V L TP+ + ++ QD L + ++T++D F D + Y+ +V P P
Sbjct: 514 MVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKV--PQP 571
Query: 447 AILKPVELWTGKQLFSVLIRPHAN-MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 505
AILKP LWTGKQ+FS++I + N +R + E + K I + GD ++ IE
Sbjct: 572 AILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWI-SPGDTKVIIE----- 625
Query: 506 DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH 565
+ EL+SG + T+G + L+ V L + G + + + + W+
Sbjct: 626 -------HGELLSGIVCSKTVGKSAGNLLHVVTL-ELGYEIAANFYSHIQTVINAWLIRE 677
Query: 566 GFSIGI-DDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
G +IGI D + + D + + +V +V K +N+ L+ PG QT E +
Sbjct: 678 GHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHND-DLEPTPGNTLRQTFENKVN 736
Query: 625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
ILN R+ G + SL N+ M GSKGS INISQ++ACVGQQ+V G+R P GF
Sbjct: 737 QILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGF 796
Query: 685 IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
R+LPHF + P +KGFV NS+ +GL+ +EFFFH MGGREGL+DTAVKTA+TGY+ R
Sbjct: 797 RHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 856
Query: 745 RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
RLIKA+E + + YD +VRN+ +VQ YG+DG+D
Sbjct: 857 RLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLD 891
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 129/400 (32%), Positives = 194/400 (48%), Gaps = 51/400 (12%)
Query: 895 SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKR 954
SR++ + G +GA+ AQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN +K
Sbjct: 1068 SRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKT 1127
Query: 955 ISTPIITAELE---CNDNENAARVVKGRIEKTLLGQVA-----------KSIKIVMTSRL 1000
+ TP +T L D E A V+ ++E T L +V K+ I
Sbjct: 1128 LKTPSLTVFLTGAAAKDPEKAKDVL-CKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEW 1186
Query: 1001 ASIV-----------------IALDMETIQDAHLCIN--ADIVKESIVQTPKIKLKQQHI 1041
SI I LD + + D L + AD + +
Sbjct: 1187 VSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNA 1246
Query: 1042 KVLDFRKLEIF---------PPVDKSKIHFELYSLK-NVLPMVIVKGIKTVERVVIAEKE 1091
+ L FR L I VDK + L ++ N+L + ++GI + +V + +
Sbjct: 1247 EKLVFR-LRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPN 1305
Query: 1092 KEKRK----VKENGEKK--KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEA 1145
+ +K E G K + L +GT L V+ ID +T SN I E+ + LGIEA
Sbjct: 1306 TDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEA 1365
Query: 1146 ARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFE 1205
R I E++ + G ++ RH+ LL D+MT +G ++ ITR GI + + LM SFE
Sbjct: 1366 VRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFE 1425
Query: 1206 KTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
+T D L A+V+ +D ++GVSE I++G GTG +
Sbjct: 1426 ETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDL 1465
>sp|O27125|RPOA1_METTH DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoA1 PE=3 SV=1
Length = 870
Score = 503 bits (1294), Expect = e-141, Method: Compositional matrix adjust.
Identities = 274/724 (37%), Positives = 424/724 (58%), Gaps = 33/724 (4%)
Query: 84 YILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNE 140
Y L P V +R++D D +L ++ RPE +++T + VPP+ +RPS+ ++ + +E
Sbjct: 169 YKLTPSEVRERLERISDDDALILGVNPEVARPEWMVLTVLPVPPVTVRPSITLETGERSE 228
Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVA 199
+D+T +L I++ N L++ + WE LQ V Y +++ GVP + +
Sbjct: 229 DDLTHKLVDILRINQRLKENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSG 288
Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
RPL QRLKGK+GRFR NLSGKRV ++ RTVISPDPN+ I EV +P +AR +T P
Sbjct: 289 RPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVISPDPNISINEVGVPEIIAREVTVPVY 348
Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
V++ NI+++R+ I+NGPD +PGA + PDG +Y + + + LK G IV+RHL+D
Sbjct: 349 VTEWNIDRMREYIENGPDVHPGANYVIRPDGRKIRIYNETKEVVLENLKPGYIVERHLKD 408
Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
GD+VLFNRQPSLHRMS+M H+ R++P++T R N VC PYNADFDGDEMNMHV QTEE+R
Sbjct: 409 GDIVLFNRQPSLHRMSMMAHQVRVLPYKTFRLNLCVCPPYNADFDGDEMNMHVFQTEESR 468
Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDT-FYDRAAFSLMCCYMGDGM 438
EA LM VQ ++ +P+ G ++ D ++ ++L+TRK F + F + +
Sbjct: 469 AEAKTLMRVQEHILSPRFGGPIIGGIHDHISGAYLLTRKSAVFSEEKVFQI--------L 520
Query: 439 DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
+ LP P WTGK++FS+++ NM Y ++ R E
Sbjct: 521 KKAGLPLPDSRG--RDWTGKEIFSMVLPDDLNM-----------VYRAEVCRK---CEEC 564
Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
+E C ND +V N +LISG + + G + ++++YG A ++ KL+
Sbjct: 565 LEMECENDAYVVIENGQLISGVIDEKAYG-AFAGKILDHIVKEYGTDAAREFLDSATKLA 623
Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
I + GF+ +D + +E ++ + + I+ Y G+L+ PG +T
Sbjct: 624 IAGIMHAGFTTSTNDEEIPEEARERIEAHLRNAEARVDQLIEAYENGELEPLPGRSLEET 683
Query: 619 LEAVITDILNRIREDAGKACMGSLPW-RNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
LE I +L R+ +G+ N +IM+ G++GS +N++Q+ ACVGQQSV G
Sbjct: 684 LEMKIMQVLGEARDKSGEIAESYFDMDENHAVIMALTGARGSMLNLTQITACVGQQSVRG 743
Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
R G+ +R+LPHF + ++GFV +S+ GL EFFFH MGGREGLVDTA++TA
Sbjct: 744 GRISRGYDNRTLPHFKKGELGAKSRGFVHSSYKEGLDPIEFFFHAMGGREGLVDTAIRTA 803
Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
+GYM RRL+ AL+DL++ + V + G I+Q +G+DG+DPA + G+ ++ D+L+
Sbjct: 804 QSGYMQRRLVNALQDLTVDENGRVVDNRGVIIQNRFGEDGVDPAKSD--YGKIVDLDKLV 861
Query: 798 MKVK 801
+++
Sbjct: 862 EEIR 865
>sp|P41556|RPOA1_METVS DNA-directed RNA polymerase subunit A' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoA1 PE=3 SV=1
Length = 889
Score = 502 bits (1292), Expect = e-141, Method: Compositional matrix adjust.
Identities = 279/732 (38%), Positives = 432/732 (59%), Gaps = 43/732 (5%)
Query: 86 LNPVNVLFLFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
L V + +++ + DC++L ++ R PE +++T + VPP+ +RPS+ ++ + +E+D
Sbjct: 178 LTSSEVREILEKIPNEDCKLLGINSRVARPEYMVLTVLPVPPVTVRPSITLESGERSEDD 237
Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
+T +L II+ N L++ + W+ LQ + Y +++ G+P + + RP
Sbjct: 238 LTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRP 297
Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
L QRLKGK+GRFR NL+GKRV ++ RTVISPDP L I EV IP +A+ LT PE+V+
Sbjct: 298 LRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEVGIPELIAKELTVPEKVT 357
Query: 262 DHNIEKLRQCIQNGPDKYPGA----RMIRYPDGTARVLYGKFRN---QLAVE-LKSGCIV 313
+NIE++R+ I+NG DK+PG + ++ DG K + ++ VE + G +V
Sbjct: 358 PYNIERIRKLIENGSDKHPGVNYVIKKVKTKDGKEEEYKIKITDTNKKMWVENIVDGMVV 417
Query: 314 DRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVP 373
+RHL DGDVVL+NRQPSLHRMSIM H+ +++P+RT R N VC PYNADFDGDEMN+HVP
Sbjct: 418 ERHLGDGDVVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVCPPYNADFDGDEMNVHVP 477
Query: 374 QTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCY 433
Q+EEAR EA LM V+ ++ +P+ G ++ + DF++ ++++T + D A L
Sbjct: 478 QSEEARAEAETLMLVEKHIISPRYGGPIIGAIHDFVSGAYVLTSSNFIKDEALTLLKSSG 537
Query: 434 MGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEG 493
G + D + +E ++GK LFS + P +NL K K K ++ +
Sbjct: 538 FGSELGEPDF----VENGIEYYSGKSLFSKTL-PKG-----LNLQYKAKV-CKKCVQCKR 586
Query: 494 DEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGL-YSVLLRDYGAHATSGCMN 552
+E C ND FV RN L+ G + K G G + G+ + +++D+G+ ++
Sbjct: 587 EE-------CENDAFVIIRNGRLVQGVIDKN--GFGAETGVVLNTIVKDFGSEDARTFLD 637
Query: 553 RLAKLSARWIGNHGFSIGIDD----VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQ 608
K+S + + GF+ GIDD + +E+ D K S+ E+ ++ Y G L
Sbjct: 638 SATKMSVKSMMLRGFTTGIDDEDIPSEAIQEIQDLLDKAESDVQEI----VERYEGGTLD 693
Query: 609 LKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVA 668
PG ++ EA I IL + R+D GK L N +M++ G++GS +NI+ M A
Sbjct: 694 PLPGRGIEESREAYIMQILGKARDDTGKVAEKYLSKENHAALMARTGARGSLLNITMMAA 753
Query: 669 CVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREG 728
VGQQSV G R G+ R+LPHF + + + GFV + + GL+ TE+FFH MGGREG
Sbjct: 754 SVGQQSVRGGRVFRGYRGRTLPHFGEGSLDAKSHGFVRSCYKKGLAPTEYFFHAMGGREG 813
Query: 729 LVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSG 788
LVD AV+TA +GYM RRL+ AL+D+ +YD +VR++ G IVQF YG+D +DP+ + G
Sbjct: 814 LVDQAVRTAQSGYMQRRLVNALQDIKAEYDGTVRDSRGIIVQFNYGEDLVDPSKAD--HG 871
Query: 789 EPLNFDRLLMKV 800
+ ++ D++ KV
Sbjct: 872 KGVDLDKVFTKV 883
>sp|Q8SSC4|RPB1_ENCCU DNA-directed RNA polymerase II subunit RPB1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB1 PE=3 SV=1
Length = 1599
Score = 499 bits (1284), Expect = e-140, Method: Compositional matrix adjust.
Identities = 286/741 (38%), Positives = 432/741 (58%), Gaps = 48/741 (6%)
Query: 80 NVATYILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGS 136
N +LN V +FK+++D D + RPE +I+T + VPP A+RPS++M+GS
Sbjct: 167 NEGKVMLNGERVYSIFKKISDEDSVYMGFDLKYSRPEWMILTVLLVPPPAVRPSIVMEGS 226
Query: 137 QSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
E+D+T +L II++N L++ E + LQ VA +I++D+ G+P ++
Sbjct: 227 LRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATFIDNDIGGLPQAL 286
Query: 197 QVA-RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
Q + RPL RLKGK+GR RGNL GKRV+++ RTVI+PDPN+ + EV +P+ +A+I T
Sbjct: 287 QKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPNISLEEVGVPLEIAKIHT 346
Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDR 315
+PE+V+ NI++L + ++ GP+++PGA + DG L F N+ + L+ G +V+R
Sbjct: 347 FPEKVTSFNIDRLEKLVRAGPNEHPGANYVLRSDGQKIDL--NF-NRSDIRLEEGYVVER 403
Query: 316 HLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQT 375
H++ GDVVLFNRQPSLH+MS+M H AR+M +T R N SV +PYNADFDGDEMN+H+PQ+
Sbjct: 404 HMQSGDVVLFNRQPSLHKMSMMAHYARVMGNKTFRLNLSVTSPYNADFDGDEMNLHMPQS 463
Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFY-DRAAFSLMCCY- 433
++ E L V + +P++ + ++ QD LT L T +DTF +R SL+
Sbjct: 464 YTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMSLLYAVN 523
Query: 434 -------MGDGMDR-------VD----LPTPAILKPVELWTGKQLFSVLIRPHANMRVYV 475
+GD + D L PAI KP+ LWTGKQ+ S ++ P+ N Y+
Sbjct: 524 LEFCDIPLGDAVQTGLRKGKDYDIMKILRKPAIAKPMRLWTGKQVLSFVL-PNLN---YI 579
Query: 476 NLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLY 535
L+ + + I GD + I+ DG+++ S +I + AT G GL
Sbjct: 580 GLSSEHDDDDKENI---GDTRVIIQ-----DGYIH---SGVIDKKAAGATQG-----GLV 623
Query: 536 SVLLRDYGAHATSGCMNRLAKL-SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEV 594
++ D+G + + + ++ +A G H FS+GI D + I + E
Sbjct: 624 HIIFNDFGPKRAAQFFDGVQRMINAFMTGIHTFSMGIGDTIADPKTVKVVESAIRKAKEE 683
Query: 595 CNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQC 654
+ I+ + +L+ PG ++ E+ + +LNR R+ +G + SL N+ M
Sbjct: 684 VSALIENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSENNNMKTMVLA 743
Query: 655 GSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLS 714
GSKGS INISQ+ ACVGQQ+V G+R P GF R+LPHF + ++GFV NS+ +GL
Sbjct: 744 GSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGKSRGFVENSYLTGLD 803
Query: 715 ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYG 774
EFFFH MGGREGL+DTA+KTA+TGY+ RRL+KALED ++ D SVR+ G + Q YG
Sbjct: 804 PEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVYQIKYG 863
Query: 775 DDGMDPANMEGKSGEPLNFDR 795
+DG D +E + + NF +
Sbjct: 864 EDGFDATFLESQKVDVKNFTK 884
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 202/406 (49%), Gaps = 53/406 (13%)
Query: 901 RVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPII 960
++ +G + AQS+GEP TQMTL TFH AGVAS +T GVPR+KEI N K + TP +
Sbjct: 1042 KITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVAS-TVTMGVPRLKEIFNVTKNLKTPSM 1100
Query: 961 TAEL--ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQ----- 1013
L E + AA+ ++ IE + + +I + I+ D + ++
Sbjct: 1101 KIYLDREHGKSIEAAKTIQNEIECLTVKDLCLFSEIYYDPEITGTEISDDKDFVEAYFEF 1160
Query: 1014 ---DAHLCINADIVKESIVQTPK-----IKLKQ------------QHIKVLDFRKLEIFP 1053
D + + +V K I L+ H+ D + +
Sbjct: 1161 PDEDVDFSCLSPFLMRLVVDRAKLVGRGINLEYVAMFIRKELGGGAHVICSDENAVNMVV 1220
Query: 1054 PVDKSK-----IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRL 1108
V +K ++F +L ++L + + G K V++V I+E + ++K++ L
Sbjct: 1221 RVRTTKSEDESLNFYTTALNSLLRLQL-GGYKNVKKVYISEDK----------DRKEWYL 1269
Query: 1109 LVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKR 1168
+G L ++G ++ T SN + E+ +TLGIEAAR I+ E+ + +G ++ R
Sbjct: 1270 QTDGICLSQILGNPAVNSRLTISNDLVEIAETLGIEAARESILRELTIVIDGNGSYVNYR 1329
Query: 1169 HMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSE 1228
HM LLAD+MT RG + GITR G+ K+ L +SFE+T + L +A++ + G++E
Sbjct: 1330 HMSLLADVMTMRGYLCGITRHGVNKVGAGALKRSSFEETVEILLDAALVSEKNICRGITE 1389
Query: 1229 CIIMGIPMPLGTG----ILKIRQRD-AVP---PMLKYGAP-DPIMS 1265
I+MG P+GTG +L +++ D A+P P+ K P P++S
Sbjct: 1390 NIMMGQLAPMGTGNIEIMLDMKKLDKAIPLSNPVFKPNEPATPVIS 1435
>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila
melanogaster GN=RpII215 PE=3 SV=4
Length = 1887
Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust.
Identities = 278/695 (40%), Positives = 412/695 (59%), Gaps = 26/695 (3%)
Query: 91 VLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERL 147
V + K +TD +C +L + RP+ +I+T + VPP+A+RP+V+M G+ N++D+T +L
Sbjct: 213 VWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKL 272
Query: 148 KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVA-RPLSGFV 206
II+ N L++ +A + LQ VA +++D+ G+P +MQ + +PL
Sbjct: 273 SDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIK 332
Query: 207 QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 266
RLKGK+GR RGNL GKRV+++ RTVI+PDPNL+I +V +P +A+ LT+PE V+ NI+
Sbjct: 333 ARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
Query: 267 KLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFN 326
++++ ++ G +YPGA+ I +G R+ + L+ G V+RHL D D+V+FN
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNG-ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFN 451
Query: 327 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLM 386
RQP+LH+MS+M HR +++PW T R N S +PYNADFDGDEMN+HVPQ+ E R E +
Sbjct: 452 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 511
Query: 387 GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTP 446
+ TP+ + ++ QD LT+ +T++D F R +M M +P P
Sbjct: 512 ITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITRE--QVMNLLMFLPTWDAKMPQP 569
Query: 447 AILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR--IETMCP 504
ILKP LWTGKQ+FS++I + NM +T+S T DEE + + P
Sbjct: 570 CILKPRPLWTGKQIFSLIIPGNVNMI---------RTHS-----THPDEEDEGPYKWISP 615
Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
D V + ELI G L K +LG + L + + G + + W+
Sbjct: 616 GDTKVMVEHGELIMGILCKKSLGT-SAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLF 674
Query: 565 HGFSIGIDDVQPKKELSDKKGKLISE-NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVI 623
G SIGI D + ++ + I + +V NV K +N +L+ PG QT E +
Sbjct: 675 EGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNM-ELEPTPGNTLRQTFENKV 733
Query: 624 TDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNG 683
ILN R+ G + SL N+ M GSKGS INISQ++ACVGQQ+V G+R P G
Sbjct: 734 NRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYG 793
Query: 684 FIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMS 743
F R+LPHF + P ++GFV NS+ +GL+ +EF+FH MGGREGL+DTAVKTA+TGY+
Sbjct: 794 FRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQ 853
Query: 744 RRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
RRLIKA+E + + YD +VRN+ G ++Q YG+DG+
Sbjct: 854 RRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGL 888
Score = 181 bits (458), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 130/420 (30%), Positives = 205/420 (48%), Gaps = 61/420 (14%)
Query: 881 ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
++ + E + +R++ + G +GA+ AQS+GEP TQMTL TFHFAGV+S N+T
Sbjct: 1052 LSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1111
Query: 941 GVPRIKEIINGAKRISTPIITAELECNDNENA--ARVVKGRIEKTLLGQVAKSIKIVMTS 998
GVPR+KEIIN +K+ P +T L +A A+ V R+E T L +V + I
Sbjct: 1112 GVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 1171
Query: 999 RLASIVIA----------------------------LDMETIQDAHL------------- 1017
VI+ LD + + D L
Sbjct: 1172 DPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGF 1231
Query: 1018 -----CINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLK-NVL 1071
CI D + +V +I + + K D + VDK + L ++ N+L
Sbjct: 1232 GEDLNCIFNDDNADKLVLRIRI-MNNEENKFQDEDEA-----VDKMEDDMFLRCIEANML 1285
Query: 1072 PMVIVKGIKTVERVVIAEKEKEKRK---VKENGEKK---KYRLLVEGTGLQAVMGAEGID 1125
+ ++GI+ + +V + + + +K + E GE K ++ L +GT + V+ +D
Sbjct: 1286 SDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVD 1345
Query: 1126 GCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLG 1185
+T SN I E+ Q LGIEA R + E+N ++ +G+ ++ RH+ LL D+MT +G ++
Sbjct: 1346 PIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMA 1405
Query: 1186 ITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
ITR GI + D LM SFE+T D L +A+ + D + GVSE IIMG +GTG +
Sbjct: 1406 ITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDL 1465
>sp|P0CX02|RPOA1_HALSA DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoA1 PE=3
SV=1
Length = 971
Score = 488 bits (1256), Expect = e-136, Method: Compositional matrix adjust.
Identities = 271/716 (37%), Positives = 395/716 (55%), Gaps = 43/716 (6%)
Query: 86 LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
L P ++ F+ + D E L ++ RPE +I+T + VPP+ RPS+ +D Q +E+D
Sbjct: 247 LMPSDIRDWFEDIPGEDLEALGVNSDRSRPEWMILTVLPVPPVTARPSITLDNGQRSEDD 306
Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
+T +L II+ N + WE LQ V ++++++ G P + + RP
Sbjct: 307 LTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRSGRP 366
Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
L QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+A +T V+
Sbjct: 367 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVATEMTQTMVVN 426
Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
+ N+E+ R+ ++NGP+ +PGA + PDG + K +LA ++ G V RHL DGD
Sbjct: 427 EQNLERARRYVRNGPEGHPGANYVTRPDGRRVRVTEKVCEELAERVEPGWEVQRHLIDGD 486
Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
+++FNRQPSLHRMSIM H +MP++T R N VC PYNADFDGDEMNMH Q EEAR E
Sbjct: 487 IIIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAE 546
Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
A +LM VQ + +P+ GE ++ + QD ++ ++L+T + ++ S + R+
Sbjct: 547 ARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTNDNPRFNETQASDLLRQT-----RI 601
Query: 442 D-LPTPAILKP--VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
D LP A + WTG Q+FS L+ S + T GD
Sbjct: 602 DELPAAAGTDEDGDQYWTGHQIFSELL---------------PDDLSLEFTGTTGD---- 642
Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
V + +L+ G + +G + + + + +G +N +A L+
Sbjct: 643 ---------TVVIEDGQLLEGTIADDEVGEYGSE-IVDTITKVHGNTRARIFINEVASLA 692
Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
R I + GFSIGIDD E ++ + I Y+ I+ Y G L+ PG +T
Sbjct: 693 MRSIMHFGFSIGIDDETVSTEARERIDEAIQSAYDRVQELIETYENGDLESLPGRTVDET 752
Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
LE I L + R+ AG + N ++M+ G++GS +N++QM CVGQQ+V G
Sbjct: 753 LEMKIMQTLGKARDSAGDVAEENFDEDNPAVVMANSGARGSMLNLTQMAGCVGQQAVRGE 812
Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
R G+ DR+L HF A GFV NS+ SGL+ EFFFH MGGREGLVDTAV+T+
Sbjct: 813 RINRGYEDRTLSHFAPNDLSSEAHGFVENSYTSGLTPKEFFFHAMGGREGLVDTAVRTSK 872
Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFD 794
+GY+ RRLI AL +L QYD +VR+ IVQF +G+DG P + S E ++ D
Sbjct: 873 SGYLQRRLINALSELETQYDGTVRDTSDTIVQFEFGEDGTSPVQV--SSNEEVDID 926
>sp|B0R8D4|RPOA1_HALS3 DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoA1 PE=1 SV=1
Length = 971
Score = 488 bits (1256), Expect = e-136, Method: Compositional matrix adjust.
Identities = 271/716 (37%), Positives = 395/716 (55%), Gaps = 43/716 (6%)
Query: 86 LNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEND 142
L P ++ F+ + D E L ++ RPE +I+T + VPP+ RPS+ +D Q +E+D
Sbjct: 247 LMPSDIRDWFEDIPGEDLEALGVNSDRSRPEWMILTVLPVPPVTARPSITLDNGQRSEDD 306
Query: 143 ITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVARP 201
+T +L II+ N + WE LQ V ++++++ G P + + RP
Sbjct: 307 LTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRSGRP 366
Query: 202 LSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS 261
L QRLKGK+GRFRG+LSGKRV ++ RTVISPDP L + EV +P R+A +T V+
Sbjct: 367 LKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVATEMTQTMVVN 426
Query: 262 DHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGD 321
+ N+E+ R+ ++NGP+ +PGA + PDG + K +LA ++ G V RHL DGD
Sbjct: 427 EQNLERARRYVRNGPEGHPGANYVTRPDGRRVRVTEKVCEELAERVEPGWEVQRHLIDGD 486
Query: 322 VVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
+++FNRQPSLHRMSIM H +MP++T R N VC PYNADFDGDEMNMH Q EEAR E
Sbjct: 487 IIIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAE 546
Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
A +LM VQ + +P+ GE ++ + QD ++ ++L+T + ++ S + R+
Sbjct: 547 ARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTNDNPRFNETQASDLLRQT-----RI 601
Query: 442 D-LPTPAILKP--VELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIR 498
D LP A + WTG Q+FS L+ S + T GD
Sbjct: 602 DELPAAAGTDEDGDQYWTGHQIFSELL---------------PDDLSLEFTGTTGD---- 642
Query: 499 IETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLS 558
V + +L+ G + +G + + + + +G +N +A L+
Sbjct: 643 ---------TVVIEDGQLLEGTIADDEVGEYGSE-IVDTITKVHGNTRARIFINEVASLA 692
Query: 559 ARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQT 618
R I + GFSIGIDD E ++ + I Y+ I+ Y G L+ PG +T
Sbjct: 693 MRSIMHFGFSIGIDDETVSTEARERIDEAIQSAYDRVQELIETYENGDLESLPGRTVDET 752
Query: 619 LEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
LE I L + R+ AG + N ++M+ G++GS +N++QM CVGQQ+V G
Sbjct: 753 LEMKIMQTLGKARDSAGDVAEENFDEDNPAVVMANSGARGSMLNLTQMAGCVGQQAVRGE 812
Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
R G+ DR+L HF A GFV NS+ SGL+ EFFFH MGGREGLVDTAV+T+
Sbjct: 813 RINRGYEDRTLSHFAPNDLSSEAHGFVENSYTSGLTPKEFFFHAMGGREGLVDTAVRTSK 872
Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFD 794
+GY+ RRLI AL +L QYD +VR+ IVQF +G+DG P + S E ++ D
Sbjct: 873 SGYLQRRLINALSELETQYDGTVRDTSDTIVQFEFGEDGTSPVQV--SSNEEVDID 926
>sp|Q03585|RPOA1_THEAC DNA-directed RNA polymerase subunit A' OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoA1 PE=3 SV=1
Length = 885
Score = 453 bits (1165), Expect = e-126, Method: Compositional matrix adjust.
Identities = 266/777 (34%), Positives = 417/777 (53%), Gaps = 60/777 (7%)
Query: 18 IVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKA 77
+ KK +AS+ + CP CG + + + F T+ K
Sbjct: 136 LTKKYVDLASQRMVCPHCGAQQSKI---------------ILDKPTTFREEGTNVK---- 176
Query: 78 AVNVATYILNPVNVLFLFKRMTDTDCEVLYL---SERPEKLIITNIAVPPIAIRPSVIMD 134
+ P + +R+ D D + RPE +++T + VPPI +RPS+ ++
Sbjct: 177 --------ITPKEIRERLERIPDDDLIFFGFNPKTARPEWMVLTVLPVPPINVRPSITLE 228
Query: 135 GSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPF 194
+ +E+D+T +L II+ + L++ + W+ LQ V Y ++ G+P
Sbjct: 229 TGERSEDDLTHKLVDIIRISQRLRESRDNGSPQLIIEDLWDLLQFHVTTYFDNQTPGIPP 288
Query: 195 S-MQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
+ + R L VQRLKGK+GRFR NLSGKRV ++ RTVISP+P L + EV +P R AR
Sbjct: 289 ARHRSGRALKTLVQRLKGKEGRFRSNLSGKRVSFSSRTVISPEPYLSVNEVGVPERAARE 348
Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYG-----KFRNQLAVE-- 306
LT P V+ NI+++R+ I+ G + P + RY G V+ K +Q A E
Sbjct: 349 LTVPVIVNQFNIDEMRELIKRG--RNPRDQFGRYVTGVNYVIRPDGRRIKITDQNAAENA 406
Query: 307 --LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFD 364
+ G V+R L +GD+VLFNRQPSLHRMS+M H RI+P +T RFN +VC PYNADFD
Sbjct: 407 DRIDIGWTVERQLMEGDIVLFNRQPSLHRMSMMGHTVRILPGQTFRFNLAVCTPYNADFD 466
Query: 365 GDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDR 424
GDEMN+HV Q EEAR EA ++M VQ + +P+ G ++ D +T+ FL+T + Y
Sbjct: 467 GDEMNLHVIQKEEARAEARIIMKVQEQIMSPRFGGPIIGGIHDHVTALFLLTHNNPRYTH 526
Query: 425 AAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTY 484
+ Y+ + LP I + + G+ +FS ++ N+R + K
Sbjct: 527 EEMVHIMAYLEPDL----LPEARIENGEKYYYGRDIFSTILPKGLNVRF------RSKLC 576
Query: 485 SNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA 544
S R E +++ P+D +V + ++I G + +A + + + + R +G+
Sbjct: 577 SGSSERCEFEDD-------PSDTYVEIVDGKMIHGTIDEAAVSPFSG-AIIDKIFRKFGS 628
Query: 545 HATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNE 604
+ ++R+ +L+ +I GFS GI D + + +L+++ + N I+ +
Sbjct: 629 QEAARFIDRMTRLAVGFITYRGFSTGISDYDIPESAVARIEELVAQAEDRINKLIETFRR 688
Query: 605 GKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINIS 664
G+LQ PG TLE I +R+++GK L + +IM++ G++ + +NIS
Sbjct: 689 GELQPAPGRSVEDTLEMEILSEAGVVRDESGKIASSYLGLKVPSVIMARSGARATMLNIS 748
Query: 665 QMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMG 724
++ VGQQSV G R G+ +R+LPHF R A+GFV +S+ +GLS TE+FFH++G
Sbjct: 749 EVAGIVGQQSVRGGRLNRGYYNRTLPHFKRGDIGADARGFVRSSYMTGLSPTEYFFHSIG 808
Query: 725 GREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPA 781
GREGLVDTAV+T+ +GYM RRLI A EDL + V++ G ++Q YG+DG+DP
Sbjct: 809 GREGLVDTAVRTSRSGYMQRRLINAFEDLKVDDSREVKDTVGSLIQIRYGEDGIDPT 865
>sp|P09846|RPOA1_METTW DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoA1 PE=3 SV=2
Length = 865
Score = 452 bits (1163), Expect = e-126, Method: Compositional matrix adjust.
Identities = 255/723 (35%), Positives = 412/723 (56%), Gaps = 36/723 (4%)
Query: 84 YILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMDGSQSNE 140
Y L P V +R+TD D +L ++ RPE +++T + VPP+ +RPS+ ++ + +E
Sbjct: 169 YKLTPSEVRERLERITDNDSLLLGVNPEVARPEWMVLTVLPVPPVTVRPSITLETGERSE 228
Query: 141 NDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-MQVA 199
+D+T +L I++ N L++ + WE LQ V Y +++ GVP + +
Sbjct: 229 DDLTHKLVDILRINQRLKENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSG 288
Query: 200 RPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPER 259
RPL QRLKGK+GRFR NLSGKRV ++ RTV+SPDPN+ + EV +P +A+ +T P
Sbjct: 289 RPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVVSPDPNVSVNEVGVPELIAKEVTVPVY 348
Query: 260 VSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLED 319
V++ NI+++++ I+NGPD +PGA + PDG Y + ++ + LK G IV+RHL+D
Sbjct: 349 VTEWNIDRMKEHIENGPDVHPGANYVIRPDGRKIRAYNETKDVVLENLKPGYIVERHLKD 408
Query: 320 GDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR 379
GD+VLFNRQPSLHRMS+M H R++P++T R N VC PYNADFDGDEMNMHV QTEE+R
Sbjct: 409 GDIVLFNRQPSLHRMSMMAHEVRVLPYKTFRLNLCVCPPYNADFDGDEMNMHVFQTEESR 468
Query: 380 TEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMD 439
EA LM VQ+++ +P+ ++ SS + T + + + D
Sbjct: 469 AEAKTLMRVQDHILSPRFRDL----------SSGVYTTISQEHTSSQGKRLFSVRSRPPD 518
Query: 440 RVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRI 499
+ P + WT K++FS+++ NM Y ++ R + DE + +
Sbjct: 519 PQEGRAPPPDREGREWTVKEIFSMVLPDDLNM-----------VYLAEICR-KCDECLEM 566
Query: 500 ETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSA 559
+ ND +V N +LI+G + + G + ++++YG+ A ++ KL+
Sbjct: 567 D--WENDAYVVIENGQLITGVIDEKAYG-AFAGKILDQIVKEYGSDAAKEFLDSATKLAI 623
Query: 560 RWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTL 619
I + GF+ +D + +E ++ + + I+ Y G+L+ PG +TL
Sbjct: 624 AGIMHAGFTTSTNDEEIPEEAKERIEAHLRNAEARVDQLIEAYENGELEPLPGRSLEETL 683
Query: 620 EAVITDILNRIREDAGKACMGSLPW-RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGR 678
E I +L ++ +G+ N +IM+ G++G+ +N++Q+ ACVGQQSV G
Sbjct: 684 EMKIMQVLGEAKDKSGEIAESYFDMDENHAVIMALTGARGAMLNLTQITACVGQQSVHGG 743
Query: 679 RAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAD 738
R G+ +R+LPHF + ++GFV +S+ EF MGGREGLVDTA++TA
Sbjct: 744 RITRGYDNRTLPHFKKGELGAKSRGFVHSSYKEDSILLEF----MGGREGLVDTAIRTAQ 799
Query: 739 TGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLM 798
+GYM RRL+ AL+DL++ + V + G I+Q +G+DG+DPA + G+ ++ D+L+
Sbjct: 800 SGYMQRRLVNALQDLTVDENGRVVDNRGVIIQTRFGEDGVDPAKSD--YGKIVDLDKLVQ 857
Query: 799 KVK 801
+++
Sbjct: 858 EIR 860
>sp|P17545|RPB1B_TRYBB DNA-directed RNA polymerase II subunit RPB1-B OS=Trypanosoma brucei
brucei GN=TRP5.9 PE=1 SV=1
Length = 1766
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 263/705 (37%), Positives = 387/705 (54%), Gaps = 38/705 (5%)
Query: 94 LFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
+ R++D D ++ + P L++T + VPP +RP++ G +S++ ++T ++ I
Sbjct: 220 VLDRVSDDDARLMGFDPQRCHPRDLVLTVLPVPPPQVRPAISFGGLRSDD-ELTHQIMSI 278
Query: 151 IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYIN-SDVRGVPFSMQVARPLSGFVQRL 209
++ N L+++ E++ LQ VA Y N + P + + L +RL
Sbjct: 279 VKRNNQLRRD-KESDVQAAIDRSRALLQEHVATYFNNASTYYKPTKVNDTKKLKSLTERL 337
Query: 210 KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
KGK GR RGNL GKRV+++ RTVI+ DPN+ + EV +P +A LT+PERV+ N ++L
Sbjct: 338 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTINKKRLT 397
Query: 270 QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQP 329
+ + YP A I +P+GT L R++ V L G +V+RH+ +GDVVLFNRQP
Sbjct: 398 EFARR--TVYPSANYIHHPNGTITKL-ALLRDRSKVTLNIGDVVERHVINGDVVLFNRQP 454
Query: 330 SLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQ 389
+LHRMS+M HR R++ + T R N S PYNADFDGDEMN+HVPQ+ + E + +M V
Sbjct: 455 TLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVP 514
Query: 390 NNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAIL 449
N +P + QD L S+ +T KDTF D+ + + +D LP PAIL
Sbjct: 515 KNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALW----LDLWQLPIPAIL 570
Query: 450 KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFV 509
KP LWTGKQ+FS LI P N T +++ ND V
Sbjct: 571 KPRPLWTGKQVFS-LILPEVNHPA----TPQDR-----------------PPFPHNDSVV 608
Query: 510 YFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSI 569
R +L+ G + K+ +G L V+ ++G+ + +N + +++ ++ N GFS+
Sbjct: 609 MIRRGQLLCGPITKSIVG-AAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSV 667
Query: 570 GIDD-VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILN 628
G+ D V L L+ V + N L K G Q+ EA + LN
Sbjct: 668 GVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAANNR-TLNRKAGMTLLQSFEADVNSALN 726
Query: 629 RIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRS 688
+ RE+A K + ++ NS +M + GSKG+ +NI Q+ VGQQ+V G R P GF R+
Sbjct: 727 KCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRT 786
Query: 689 LPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIK 748
LPHF ++G + GL EFFFHTM GREGL+DTAVKT+DTGY+ R+LIK
Sbjct: 787 LPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIK 846
Query: 749 ALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
ALED+ YD +VRNA ++QF+YG+DG+D A +EG PL F
Sbjct: 847 ALEDVHAAYDGTVRNANDELIQFMYGEDGLDGARIEGGQLFPLPF 891
Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 195/414 (47%), Gaps = 50/414 (12%)
Query: 881 ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
+ ++ E ++ ++Y G IGAI AQS GEP TQMTL TFH AG++S N+T
Sbjct: 1058 LNDRAFEYLLKEIRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTL 1117
Query: 941 GVPRIKEIINGAKRISTPIITAEL-ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSR 999
GVPR+ E++N ++ +T L D + A+ + IE L + + I+ +
Sbjct: 1118 GVPRLLELLNVSRNQKHASMTVSLFPPYDEKRNAQKAQHLIEYCTLESITRRIQFIYDPD 1177
Query: 1000 LASIVIALDMETIQ---------DAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKL- 1049
V+ D + ++ DA L I + V ++ + K LD + +
Sbjct: 1178 PRHTVVEADRDILELEWNVMDESDAELRIQEVVAGSPWVVRLELDVDMVTDKALDMKDVK 1237
Query: 1050 EIFPPVDKSKI-----------------------HFELYSLKNVLPMVI----VKGIKTV 1082
+ VD+S I + LK +P ++ ++GI V
Sbjct: 1238 QAILRVDESYIIETGMANNVRQRTIRMRSRYNEGADSIPKLKREIPALLARVHLRGIPGV 1297
Query: 1083 ERVVIAEKEK---EKRKVKENGEKKKYRLLVEGTGLQ----AVMGAEG---IDGCKTKSN 1132
R ++ + + ++ K +G K + + +GT L+ V+G +G I+ KT SN
Sbjct: 1298 RRALLKDTTEFTVDQATGKMSG-NKIWAIDTDGTALRRAFIGVVGEDGKNIINAVKTSSN 1356
Query: 1133 HIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQ 1192
+ EV LGIEAAR ++ E+ E A+G++I+ RH +L D + G ++ ++R GI
Sbjct: 1357 KVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVSRSGIN 1416
Query: 1193 KMDKS-VLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
+ D S LM SFE+T L A+ G D + GVS +++G +GTG+ +
Sbjct: 1417 RSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDL 1470
>sp|P17546|RPB1A_TRYBB DNA-directed RNA polymerase II subunit RPB1-A OS=Trypanosoma brucei
brucei GN=TRP4.8 PE=1 SV=1
Length = 1766
Score = 449 bits (1154), Expect = e-125, Method: Compositional matrix adjust.
Identities = 263/705 (37%), Positives = 387/705 (54%), Gaps = 38/705 (5%)
Query: 94 LFKRMTDTDCEVLYLSER---PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRI 150
+ R++D D ++ + P L++T + VPP +RP++ G +S++ ++T ++ I
Sbjct: 220 VLDRVSDDDARLMGFDPQRCHPRDLVLTVLPVPPPQVRPAISFGGLRSDD-ELTHQIMSI 278
Query: 151 IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYIN-SDVRGVPFSMQVARPLSGFVQRL 209
++ N L+++ E++ LQ VA Y N + P + + L +RL
Sbjct: 279 VKRNNQLRRD-KESDVQAAIDRSRALLQEHVATYFNNASTYYKPTKVNDTKKLKSLTERL 337
Query: 210 KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 269
KGK GR RGNL GKRV+++ RTVI+ DPN+ + EV +P +A LT+PERV+ N ++L
Sbjct: 338 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLT 397
Query: 270 QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQP 329
+ + YP A I +P+GT L R++ V L G +V+RH+ +GDVVLFNRQP
Sbjct: 398 EFARR--TVYPSANYIHHPNGTITKL-ALLRDRSKVTLNIGDVVERHVINGDVVLFNRQP 454
Query: 330 SLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQ 389
+LHRMS+M HR R++ + T R N S PYNADFDGDEMN+HVPQ+ + E + +M V
Sbjct: 455 TLHRMSMMGHRVRVLNYSTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVP 514
Query: 390 NNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAIL 449
N +P + QD L S+ +T KDTF D+ + + +D LP PAIL
Sbjct: 515 KNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALW----LDLWQLPIPAIL 570
Query: 450 KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFV 509
KP LWTGKQ+FS LI P N T +++ ND V
Sbjct: 571 KPRPLWTGKQVFS-LILPEVNHPA----TPQDR-----------------PPFPHNDSVV 608
Query: 510 YFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSI 569
R +L+ G + K+ +G L V+ ++G+ + +N + +++ ++ N GFS+
Sbjct: 609 MIRRGQLLCGPITKSIVG-AAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSV 667
Query: 570 GIDD-VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILN 628
G+ D V L L+ V + N L K G Q+ EA + LN
Sbjct: 668 GVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAANNR-TLNRKAGMTLLQSFEADVNSALN 726
Query: 629 RIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRS 688
+ RE+A K + ++ NS +M + GSKG+ +NI Q+ VGQQ+V G R P GF R+
Sbjct: 727 KCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRT 786
Query: 689 LPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIK 748
LPHF ++G + GL EFFFHTM GREGL+DTAVKT+DTGY+ R+LIK
Sbjct: 787 LPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIK 846
Query: 749 ALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNF 793
ALED+ YD +VRNA ++QF+YG+DG+D A +EG PL F
Sbjct: 847 ALEDVHAAYDGTVRNANDELIQFMYGEDGLDGARIEGGQLFPLPF 891
Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 195/414 (47%), Gaps = 50/414 (12%)
Query: 881 ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
+ ++ E ++ ++Y G IGAI AQS GEP TQMTL TFH AG++S N+T
Sbjct: 1058 LNDRAFEYLLKEIRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTL 1117
Query: 941 GVPRIKEIINGAKRISTPIITAEL-ECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSR 999
GVPR+ E++N ++ +T L D + A+ + IE L + + I+ +
Sbjct: 1118 GVPRLLELLNVSRNQKHASMTVSLFPPYDEKRNAQKAQHLIEYCTLESITRRIQFIYDPD 1177
Query: 1000 LASIVIALDMETIQ---------DAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKL- 1049
V+ D + ++ DA L I + V ++ + K LD + +
Sbjct: 1178 PRHTVVEADRDILELEWNVMDESDAELRIQEVVAGSPWVVRLELDVDMVTDKALDMKDVK 1237
Query: 1050 EIFPPVDKSKI-----------------------HFELYSLKNVLPMVI----VKGIKTV 1082
+ VD+S I + LK +P ++ ++GI V
Sbjct: 1238 QAILRVDESYIIETGMANNVRQRTIRMRSRYNEGADSIPKLKREIPALLARVHLRGIPGV 1297
Query: 1083 ERVVIAEKEK---EKRKVKENGEKKKYRLLVEGTGLQ----AVMGAEG---IDGCKTKSN 1132
R ++ + + ++ K +G K + + +GT L+ V+G +G I+ KT SN
Sbjct: 1298 RRALLKDTTEFTVDQATGKMSG-NKIWAIDTDGTALRRAFIGVVGEDGKNIINAVKTSSN 1356
Query: 1133 HIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQ 1192
+ EV LGIEAAR ++ E+ E A+G++I+ RH +L D + G ++ ++R GI
Sbjct: 1357 KVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVSRSGIN 1416
Query: 1193 KMDKS-VLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
+ D S LM SFE+T L A+ G D + GVS +++G +GTG+ +
Sbjct: 1417 RSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDL 1470
>sp|P10964|RPA1_YEAST DNA-directed RNA polymerase I subunit RPA190 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA190 PE=1
SV=2
Length = 1664
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 307/959 (32%), Positives = 479/959 (49%), Gaps = 104/959 (10%)
Query: 111 RPEKLIITNIAVPPIAIR-PSVIMDGSQSNENDITERLKRIIQTN----------ASLQQ 159
+ + + + VPP R PS + G + +EN + L +++ T+ + LQ+
Sbjct: 351 KADSFFMDVLVVPPTRFRLPSKL--GEEVHENSQNQLLSKVLTTSLLIRDLNDDLSKLQK 408
Query: 160 E---LVEANSAFKSLA-GWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGR 215
+ L + F L + T+Q +V +I+S S +V P+ G Q L+ K+G
Sbjct: 409 DKVSLEDRRVIFSRLMNAFVTIQNDVNAFIDSTKAQGRTSGKV--PIPGVKQALEKKEGL 466
Query: 216 FRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNG 275
FR ++ GKRV Y R+VISPDPN++ E+ +P A LTYPE V+ +NI +LRQ + NG
Sbjct: 467 FRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVING 526
Query: 276 PDKYPGARMIRYPDGTARVLYG---KFRNQLAVELKSGCI----------VDRHLEDGDV 322
PDK+PGA I+ DG+ L G + R LA +L + V RH+++ DV
Sbjct: 527 PDKWPGATQIQNEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKVYRHIKNRDV 586
Query: 323 VLFNRQPSLHRMSIMCHRARIMP-WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
VL NRQP+LH+ S+M H+ R++P +TLR + + YNADFDGDEMNMH PQ E AR E
Sbjct: 587 VLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAE 646
Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLM---CCYMGDGM 438
AL L + TP +G + QD +++ +T KD+F+ R + C DG
Sbjct: 647 ALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDGH 706
Query: 439 DR----VDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGD 494
V LP P I KP LWTGKQ+ + V +N+T + N + + +
Sbjct: 707 TTRSKIVTLP-PTIFKPYPLWTGKQIITT---------VLLNVTPPDMPGINLISKNKIK 756
Query: 495 EEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRL 554
E + N+ V F++ L+ G L K+ G +K G+ L YG + ++ L
Sbjct: 757 NEYWGKGSLENE--VLFKDGALLCGILDKSQYG-ASKYGIVHSLHEVYGPEVAAKVLSVL 813
Query: 555 AKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENY--------EVCNV-KIKEYNEG 605
+L +I F+ G+DD++ E + + ++ + EV N+ K ++
Sbjct: 814 GRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADDP 873
Query: 606 KL-----QLKPGCDAAQTLEAVITDILNRIREDAGKAC-----MGSLPWRNSPLIMSQCG 655
+L ++ + + L+AV + +N I C M P NS M+ G
Sbjct: 874 ELLKRLQEILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPC-NSMQAMALSG 932
Query: 656 SKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSA 715
+KGS +N+SQ++ +GQQ++ GRR P ++LP F + A G+V FYSG+
Sbjct: 933 AKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKP 992
Query: 716 TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGD 775
E++FH M GREGL+DTAVKT+ +GY+ R L K LE + + YDNS+R+A G +VQF+YG
Sbjct: 993 QEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGG 1052
Query: 776 DGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSE 835
D +D + D +K P A +L + + +K L K S
Sbjct: 1053 DAIDITKESHMTQFEFCLDNYYALLKKYNPSALIEHLDVESALKYSKKTLKYRKKHSKEP 1112
Query: 836 AFLNSLR-----------KFF----EGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSG 880
+ S++ K+ E QDKL+ + D S++ + + G
Sbjct: 1113 HYKQSVKYDPVLAKYNPAKYLGSVSENFQDKLESFL--------DKNSKLFKS----SDG 1160
Query: 881 ITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 940
+ EK+ +Q +Y + G A+G I +QS+GEP TQMTL TFHFAG + N+T
Sbjct: 1161 VNEKKFRALMQL---KYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTL 1217
Query: 941 GVPRIKEII-NGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 998
G+PR++EI+ + I TP +T + + ++ A I K LL +V + + T+
Sbjct: 1218 GIPRLREIVMTASAAIKTPQMTLPIWNDVSDEQADTFCKSISKVLLSEVIDKVIVTETT 1276
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 13/172 (7%)
Query: 1075 IVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEG-IDGCKTKSNH 1133
I++ I ++R V E E KR L+ EG QA+ E ID SN
Sbjct: 1497 IIRQIPHIDRCVHPEPENGKRV-----------LVTEGVNFQAMWDQEAFIDVDGITSND 1545
Query: 1134 IFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQK 1193
+ V +T G+EAAR I++EIN + +S+ RH+ L+AD+MT +G L R G++
Sbjct: 1546 VAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGME- 1604
Query: 1194 MDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
S M S+E T L A ++ ++++ S I++G +GTG +
Sbjct: 1605 TSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTGSFDV 1656
>sp|P15398|RPA1_SCHPO DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2
Length = 1689
Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust.
Identities = 315/964 (32%), Positives = 483/964 (50%), Gaps = 124/964 (12%)
Query: 115 LIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTN---ASLQQE-LVEANS---- 166
+ NIAVPP RP+ M G + +EN E L RI+Q++ ASL ++ VE N
Sbjct: 360 FFLQNIAVPPTRFRPASKM-GDEVHENIQNELLTRILQSSIQIASLSKDSTVEVNPDEKE 418
Query: 167 -------AFKSL-AGWETLQVEVAQYINSDVRGVPFSMQVARPLS-GFVQRLKGKQGRFR 217
AF+ L + LQ +V I+S+ P S +R + G Q L+ K+G FR
Sbjct: 419 GLERRSRAFELLINAFVQLQHDVNSLIDSNRN--PSSGGQSRTVPPGIKQILEKKEGLFR 476
Query: 218 GNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPD 277
++ GKRV Y R+VISPDPN++ E+ +P A LTYPE V+ +N ++R + NGP
Sbjct: 477 KHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVINGPH 536
Query: 278 KYPGARMIRYPDGTARVLYG---KFRNQLAVEL---KSGCI---------------VDRH 316
K+PGA I+ DGT L + R LA +L +S I V RH
Sbjct: 537 KWPGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSNLISSPYSYSRLINTNKKVYRH 596
Query: 317 LEDGDVVLFNRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQT 375
+ +GD+++ NRQP+LH+ S+M H+ARI+P +T+R + + CN YNADFDGDEMNMH PQ+
Sbjct: 597 VRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNMHFPQS 656
Query: 376 EEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCCY 433
AR+EA + + P +G+ L QD + +T KDTFY R + L
Sbjct: 657 TNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLLFQAL 716
Query: 434 MGD--GM-DRVDLPTPAILKPVELWTGKQLFS-VLIRPHANMRVYVNLTVKEKTYSNKLI 489
D GM R+ PAI +P WTGKQ+ S VL+ + R +NL K K K
Sbjct: 717 KPDETGMYGRIKTLPPAIQRPGIYWTGKQIISSVLLNLKPSDRPGLNLKSKAKV-PGKYW 775
Query: 490 RTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSG 549
+ +E G V F + EL+ G L K++ G + GL + YG
Sbjct: 776 SPDSEE-----------GSVLFDDGELLCGILDKSSFG-ASAFGLVHSVHELYGPDIAGR 823
Query: 550 CMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEY------- 602
++ L++L + GF+ +DD++ ++ + + +L+ EY
Sbjct: 824 LLSVLSRLFTAYAQMRGFTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGLSTDS 883
Query: 603 --------------NEGKLQLKPGCDAAQT--LEAVITDILNRIREDAGKACMGSLPWRN 646
++ KLQ G DAA + + + I+N+ D + P+ N
Sbjct: 884 PIALLNANLEEVYRDDEKLQ---GLDAAMKGKMNGLTSSIINKCIPDG---LLTKFPY-N 936
Query: 647 SPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVA 706
M+ G+KGS +N+SQ+ +GQQ + GRR P +SLP F + GF+A
Sbjct: 937 HMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIA 996
Query: 707 NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGG 766
+ F +G++ E++FH M GREGL+DTAVKT+ +GY+ R L+K LE L +QYD++VR++ G
Sbjct: 997 SRFLTGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDG 1056
Query: 767 CIVQFLYGDDGMDPANMEGKSGEPL---NFDRLLMKVKA----------TCPPAGQRYL- 812
IVQF YG+D +D + + N+ L+ K K T ++ L
Sbjct: 1057 SIVQFHYGEDSLDVTKQKHLTQFEFSAKNYKSLIQKYKVKSVLSAVDSETASSYAKKALK 1116
Query: 813 SPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILE 872
P + +++K + S SE F ++ ++ + DKL I ++ DD
Sbjct: 1117 KPYKYDPVLDKYPPSRYLGSVSEKFQRAVDEYTQKNPDKL---IASKKESKLDD------ 1167
Query: 873 EVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 932
S + E + + +Q RY+ V+ G ++G + +QSIGEP TQMTL TFHFAG
Sbjct: 1168 ------SLLNESKFKALMQL---RYQQSLVDPGESVGVLASQSIGEPSTQMTLNTFHFAG 1218
Query: 933 VASMNITQGVPRIKEII-NGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKS 991
+ N+T G+PR++EII + I TP +T L ++ A + K +L +V +
Sbjct: 1219 FGAKNVTLGIPRLREIIMTASANIQTPTMTLRLNDGVSDKRASAFCKEVNKLVLSEVVRQ 1278
Query: 992 IKIV 995
+++
Sbjct: 1279 VRVT 1282
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 2/140 (1%)
Query: 1107 RLLVEGTGLQAVMG-AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
+++ EG L+A+ I +N I + + G+EAAR I+ E++ +G+++
Sbjct: 1541 KVITEGVNLKAIWEFYNEISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAV 1600
Query: 1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEG 1225
D RH+ L+AD MTF G R GI+ + S SFE T L A++ G D +
Sbjct: 1601 DPRHLSLIADYMTFEGGYKAFNRMGIE-YNTSPFAKMSFETTCHFLTEAALRGDVDDLSN 1659
Query: 1226 VSECIIMGIPMPLGTGILKI 1245
S +++G GTG I
Sbjct: 1660 PSSRLVVGRVGNFGTGSFDI 1679
>sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens GN=POLR1A
PE=1 SV=2
Length = 1720
Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust.
Identities = 298/890 (33%), Positives = 443/890 (49%), Gaps = 105/890 (11%)
Query: 204 GFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDH 263
G Q L+ K+G FR ++ GKRV+Y R+VI PD + E+ IP+ A LTYP+ V+
Sbjct: 416 GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPW 475
Query: 264 NIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYG---KFRNQLAVELKSGC--------- 311
N+++LRQ + NGP+ +PGA M+ DG+ L R +A +L +
Sbjct: 476 NVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQGT 535
Query: 312 -IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMN 369
IV RH+++GD++L NRQP+LHR SI HRARI+P + LR + + C YNADFDGDEMN
Sbjct: 536 KIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMN 595
Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
H PQ+E R EA +L PK+G+ L QD + S +T + F+ R + +
Sbjct: 596 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHY-M 654
Query: 430 MCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS-VLIRPHANMRVYVNLTVKEKTYSN 486
Y G D + RV L +P+ILKP LWTGKQ+ S +LI + +NL+ K K
Sbjct: 655 ELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGK 714
Query: 487 KLIRT--EGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA 544
++ ++MC + V R EL+ G L KA G+ + GL YG
Sbjct: 715 AWVKETPRSVPGFNPDSMCESQ--VIIREGELLCGVLDKAHYGS-SAYGLVHCCYEIYGG 771
Query: 545 HATSGCMNRLAKLSARWIGNH-GFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIK--- 600
+ + LA+L ++ + GF++G++D+ K + K+ ++I E+ ++
Sbjct: 772 ETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAAL 831
Query: 601 ------EYNE--GKLQ---LKPGCDAAQTLEAVITDILNRIREDAGKACMG-----SLPW 644
Y+E GK Q L ++ + +N + KACM P
Sbjct: 832 NLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFP- 890
Query: 645 RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 704
NS +M Q G+KGS +N Q+ +GQ + GRR P +SLP F P A GF
Sbjct: 891 ENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGF 950
Query: 705 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 764
V F +G+ EFFFH M GREGLVDTAVKT+ +GY+ R +IK LE L +QYD +VR++
Sbjct: 951 VTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDS 1010
Query: 765 GGCIVQFLYGDDGMD---------------PANME--------------GKSGEPLNFDR 795
G +VQFLYG+DG+D +N E + L+ R
Sbjct: 1011 DGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHFR 1070
Query: 796 LLMKVKATCPPAGQR---YLS-PQQVSEIVEK-QLAAYGKESCSEAFLNSLRKFFEGQQD 850
+ K ++ P R +LS Q++ E V+ +L + + S LR ++E ++
Sbjct: 1071 AIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEE 1130
Query: 851 ---KLDKKIKFVEDIG---W-----------------DDKSQILEEVTHKTSGITEKQLE 887
K KK D W DD SQ T K+ +E L+
Sbjct: 1131 SRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKSELSLD 1190
Query: 888 VFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKE 947
+++ E G A+G + AQSIGEP TQMTL TFHFAG MN+T G+PR++E
Sbjct: 1191 RLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLRE 1250
Query: 948 IIN-GAKRISTPIITAELECNDNENAARV--VKGRIEKTLLGQVAKSIKI 994
I+ + I TP+++ + N + RV +K ++ + LG+V + I +
Sbjct: 1251 ILMVASANIKTPMMSVPV-LNTKKALKRVKSLKKQLTRVCLGEVLQKIDV 1299
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 10/191 (5%)
Query: 1059 KIHFELYSLKNVLPM-VIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQA 1117
KI+F++ SL L ++ K + R ++ E N +K+ L EG L
Sbjct: 1535 KINFDMSSLVVSLAHGAVIYATKGITRCLLNE-------TTNNKNEKELVLNTEGINLPE 1587
Query: 1118 VMG-AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADL 1176
+ AE +D + SN I + T GIEAA I EI + +G+++D RH+ L+AD
Sbjct: 1588 LFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADY 1647
Query: 1177 MTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPM 1236
M F G + RFGI + + S L +FE + L A++ G D + S C+++G +
Sbjct: 1648 MCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVV 1706
Query: 1237 PLGTGILKIRQ 1247
GTG+ +++Q
Sbjct: 1707 RGGTGLFELKQ 1717
>sp|Q86H36|RPA1_DICDI DNA-directed RNA polymerase I subunit rpa1 OS=Dictyostelium
discoideum GN=polr1a PE=3 SV=1
Length = 1615
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 329/1125 (29%), Positives = 521/1125 (46%), Gaps = 147/1125 (13%)
Query: 13 DLMKSIVKKC-STMASKAVKCPRCGYI-----NGMVKKAVAVLGIIHDRSKVTESLQEFA 66
D + + K+ + + A+ C CG NG K+ + +HD+ S +
Sbjct: 207 DFKREVFKEFFGSFSGYAIPCGNCGAYSPRLRNGDASKSKLFIMPLHDKYATKNSAIKLP 266
Query: 67 SAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITN------- 119
+ + KE T+ P VL K++ + + E+L + I+TN
Sbjct: 267 TNFSSVKEQTEH---GTWFA-PWEVLDNMKKLFENEKEILDMLLGHLVPIVTNKGGAKKN 322
Query: 120 ------------------IAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 161
V P RP ++G +S E+ K ++++N ++Q +
Sbjct: 323 VGRQFTKESNVDSLFMRVFPVTPARYRPPNFVNGRRS-EHPQNSHYKGMVKSNKMIRQSI 381
Query: 162 VEANSAFKSLAGWE-TLQVEVAQ-YINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGN 219
K L LQ+ V Y NS + + +VA +G Q L+ K+G FR +
Sbjct: 382 DAGEGKAKFLVNSVCDLQMHVNNMYDNS--KSNSNTNEVA---NGIKQILEKKEGLFRKH 436
Query: 220 LSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKY 279
+ GKRV Y RTVISPD +L+ E+ +P A+ LT+P+ V+ N +L Q + NGP++Y
Sbjct: 437 MMGKRVNYAARTVISPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQY 496
Query: 280 PGARMIRYPDGTARVLYGKFRNQLAVELKSGCI-------------VDRHLEDGDVVLFN 326
PGA I +G L K + + L + V RHL GD VL N
Sbjct: 497 PGANFIEDENGHLINL-SKESQEKRIALSKTLLTSHPHAPRGVNKKVYRHLLSGDYVLAN 555
Query: 327 RQPSLHRMSIMCHRARIM--PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALL 384
RQP+LH+ IM HR +++ +TLR + S C+ YNADFDGDEMN+H PQ+ A E
Sbjct: 556 RQPTLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMNIHFPQSLLASAEIRE 615
Query: 385 LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLM---CCYMGDGMDRV 441
+ P+NG L QD + + L+T++DT + +A F + C+ + +
Sbjct: 616 ICANNYQYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQAILYASCWSVNTKHPI 675
Query: 442 DLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET 501
P P ILKPV LW+GKQL S + R +NL K K+ T+G E R
Sbjct: 676 VTPPPCILKPVPLWSGKQLISAALNQLTIGRAPLNLEAPSKI-PTKMWGTKGLEITR--- 731
Query: 502 MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARW 561
D V R +E+++G L K G + GL Y + L ++ +
Sbjct: 732 ----DSHVIIRQNEMVAGILDKGHFG-ASSYGLVHTCYELYDPDVAGSLLTLLGRMFTNY 786
Query: 562 IGNHGFSIGIDDVQPK-KELSDKKGKLISENYEVCNVKIK-----EYNEGKLQ------L 609
+ + GF+ G+DD+ K KE + L N E V K +Y+E K + L
Sbjct: 787 LQSRGFTCGVDDLLMKNKEEKFRVETLKKANEEGYTVAAKFADLSKYDEQKARDFFSKAL 846
Query: 610 KPGCDAAQTLEAVITDILNRIREDAGKACM---GSLPW-RNSPLIMSQCGSKGSPINISQ 665
+ + A+ L+ ++ LN+ + P+ +N+ +M+ G+KGS +N SQ
Sbjct: 847 QSEREVAR-LDGLLKKGLNQYTSKVIDTLIPGGQQKPFPKNNFSLMTVSGAKGSVVNFSQ 905
Query: 666 MVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGG 725
+ +GQQ + G+R P ++LP F A GFV + F +G+ ++FFH M G
Sbjct: 906 VSCLLGQQELEGKRVPRMVSGKTLPSFQAYDASARAGGFVMDRFLTGVRPQDYFFHCMAG 965
Query: 726 REGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD------ 779
REGL+DTAVKT+ +GY+ R LIK LE LS+QYDN+VR + G ++QF YG+D ++
Sbjct: 966 REGLIDTAVKTSRSGYLQRCLIKHLEGLSVQYDNTVRESDGSVIQFNYGEDSLEIGKTPY 1025
Query: 780 ----PANMEG----KSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKE 831
P E KS P+ ++L+ ++K R + Q + V +
Sbjct: 1026 LTKFPIIAENYELFKSQFPM--EQLIEQLKNQEVVEYNRSIKTQPELDPVMSKFNPSSDL 1083
Query: 832 SC-SEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFI 890
C SE+F+N L + E KL ++ +++ I EK +
Sbjct: 1084 GCVSESFMNQLNHYIESNPQKL------------------IKTTSNRDGKINEKDFRNLM 1125
Query: 891 QTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII- 949
+SR V G ++G + AQSIGEP TQMTL TFH AG N+T G+PR++E+I
Sbjct: 1126 YLYYSR---SMVSPGESVGLLCAQSIGEPSTQMTLNTFHLAGRGEANVTLGIPRLRELIM 1182
Query: 950 NGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDM 1009
+ TP++ E + ND+ N K +AK ++I+ +L+ I+ + +
Sbjct: 1183 TATTKPITPLM--EFQINDSTNKVETEK----------MAKYLEIL---KLSDIIKDITV 1227
Query: 1010 -ETIQDAHLCINADI----VKESIVQTPKIKLKQQHIKVLDFRKL 1049
E QD + + +I + ++ +IK KQ + +F K+
Sbjct: 1228 QEYFQDTNRNYDIEIEFIPTLQQVLSLHRIKEKQLNKLFGEFNKV 1272
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 1075 IVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTK---S 1131
++K K + R + EK+ G K Y + EG L + E D K +
Sbjct: 1448 VLKSCKGITRCFVNEKQV--------GGKTHYSIQSEGVNLSEIF--ELRDKLKIDEIYT 1497
Query: 1132 NHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGI 1191
N I+ + Q G+EA R + EI+ A+G+S+DKRH++LL D MTF G + R GI
Sbjct: 1498 NDIYAILQKYGVEACRQAVTSEISNVFAAYGISVDKRHLILLGDYMTFEGGYRALNRIGI 1557
Query: 1192 QKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
+ + S SFE T L AS+ G D + S I++G + GTG I
Sbjct: 1558 EN-NTSPFQKMSFETTFSFLSKASLMGDYDTVTSPSSRIVLGQIVKNGTGSFTI 1610
>sp|Q7T6X5|RPO1_MIMIV DNA-directed RNA polymerase subunit 1 OS=Acanthamoeba polyphaga
mimivirus GN=RPO1 PE=1 SV=2
Length = 1495
Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust.
Identities = 237/722 (32%), Positives = 380/722 (52%), Gaps = 76/722 (10%)
Query: 85 ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAVPPIAIRPSVIMD--GSQSN 139
IL P + K ++D DC ++ RPE +II N VPP+ +RPS+ + S +
Sbjct: 205 ILTPQLCYDILKSVSDEDCIIMGFDPAKSRPEDMIILNFPVPPVQVRPSIRAEILSSPTM 264
Query: 140 ENDITERLKRIIQTNASLQQ-----ELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPF 194
++D+T +L II++N +L+ L++ S LQ+ VA + +D+ G+
Sbjct: 265 DDDLTHKLIDIIKSNENLKNTKGDGSLIKYTSINDDFM---LLQLHVATFFANDMAGLAR 321
Query: 195 SMQVARPLS-GFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARI 253
S Q + ++ +RL+GK+GR RGNL GKRV+ + RTVI+ DPN+ + EV +P+ +A+
Sbjct: 322 SQQKNKKVTKSMSERLRGKEGRIRGNLMGKRVDMSARTVITSDPNIALNEVGVPLIIAKN 381
Query: 254 LTYPERVSDHNIEKLRQCIQNGPDKYPGARMI------RYPDGTARVLYGKFRNQLAVEL 307
LT+ E V++HNIE L Q ++NG YPGA + + + + + K+ ++ + L
Sbjct: 382 LTFDEIVTEHNIEYLTQLVKNGKRVYPGANFVIKHVIDAEGNESGHIYHLKYVDK-PISL 440
Query: 308 KSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP---WRTLRFNESVCNPYNADFD 364
K G IV R L DGD+V+FNRQPSLH++S+M H+ ++P T R N SV +PYNADFD
Sbjct: 441 KPGDIVKRQLIDGDIVIFNRQPSLHKLSMMGHKCHVIPDNNLLTFRVNVSVTDPYNADFD 500
Query: 365 GDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYD- 423
GDEMN+HVPQ+ + TE LL+ +P I + + QD L S++ T D D
Sbjct: 501 GDEMNLHVPQSIQTATEILLIANASRRFVSPATSNIAIKAKQDTLMGSYVQTEPDMEIDW 560
Query: 424 RAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKT 483
R A S++ M + ++D P + +GK L+S +I N
Sbjct: 561 RDAMSIL---MSTSV-KLDNDIPK----YQNVSGKFLYSQIIPEGLN------------- 599
Query: 484 YSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLR--- 540
+ + + D+E +++ +N EL G LGK+ + S+L R
Sbjct: 600 ----ITKRKNDKEFQLK----------IKNGELTDGTLGKSEIS--------SILQRIWF 637
Query: 541 DYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIK 600
YG+ T ++ ++ +++ +G+++ I D ++++ LI + I
Sbjct: 638 QYGSKETQEFIDDAQRMILQFLMRYGYTVSIKDTVIGEKVNQYIYDLIETKRKETLAFIT 697
Query: 601 EYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSP 660
EY+ P E + + L ++++ M + + I GS G P
Sbjct: 698 EYDND-----PYVMTKDAFEIKLQENLKSVQDEIKNTVMRNFDKNSGIFIAISSGSSGEP 752
Query: 661 INISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFF 720
+N Q+ C+GQ V G+R F R+LP FP+ ++GF NSF GL EFFF
Sbjct: 753 MNAGQIAGCIGQVIVEGKRIQIRFNGRTLPMFPKFDDSAFSRGFCRNSFIEGLGPFEFFF 812
Query: 721 HTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDP 780
M GREG+++TA+KTADTGY+ R+L+K LED+ +YD +VRNA G ++ +YGD+G++
Sbjct: 813 QVMAGREGIINTAIKTADTGYIQRKLVKMLEDIKQEYDGTVRNANGKLISCVYGDNGINT 872
Query: 781 AN 782
N
Sbjct: 873 EN 874
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%)
Query: 1102 EKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAH 1161
+KK+Y ++ EG L + GID +TK N I + + G+EAAR I E +++
Sbjct: 1312 KKKQYVIIAEGINLSEMSQINGIDLLRTKCNDIVTIYEMYGVEAARTAFIKEFTAAIESS 1371
Query: 1162 GMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD 1221
G + +H+ +LAD +T G ++ + R G K+D ASFEKT + L A+V G D
Sbjct: 1372 GGFSNYQHIEILADAITHMGGLIPVNRHGANKLDTDPFSRASFEKTVEQLLAAAVFGESD 1431
Query: 1222 RIEGVSECIIMGIPMPLGTGILKI 1245
+ VS I++G + GTG +
Sbjct: 1432 HMRSVSARIMVGALINGGTGCFDL 1455
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 901 RVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPII 960
+VE G +G + AQSIGEP TQ LK+FH +G ++ G+ R+KE++ +K I TPI
Sbjct: 1057 KVEGGEMVGFVAAQSIGEPVTQTNLKSFHKSGTGK-TVSGGLVRVKELLGISKNIKTPIT 1115
Query: 961 TAELE---CNDNENAARVVKGRIEKTLLGQVAKS 991
LE ND A+R+ TL V K+
Sbjct: 1116 EIILEEKYKNDKITASRIASYLKYTTLRDVVEKA 1149
>sp|P91875|RPA1_DROME DNA-directed RNA polymerase I subunit RPA1 OS=Drosophila melanogaster
GN=RpI1 PE=1 SV=2
Length = 1642
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 306/963 (31%), Positives = 457/963 (47%), Gaps = 147/963 (15%)
Query: 115 LIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASL----------QQELVE- 163
+ + V P RP + M G N T+ II+ N L Q++L E
Sbjct: 295 FFMDTLPVTPPRARP-LNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTEE 353
Query: 164 ANSAFKSLAG----------WETLQVEVAQYINSDVRGVPFSMQVARPL---SGFVQRLK 210
A +A+++L G W LQ+ V V + ++R + G Q ++
Sbjct: 354 AKAAYQTLKGETAHEKLYTAWLALQMSV---------DVLLDVNMSREMKSGEGLKQIIE 404
Query: 211 GKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQ 270
K G R ++ GKRV Y RTVI+PDPN+ + E+ IP A+ L+YP V++ N+ +LR+
Sbjct: 405 KKSGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRK 464
Query: 271 CIQNGPDKYPGARMIRYPDGTARVL---YGKFRNQLAVELKSGC-----IVDRHLEDGDV 322
+ NGPD +PGA I+ +G + R LA L S IV RH+ +GDV
Sbjct: 465 MVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLSNPKDGIKIVHRHVLNGDV 524
Query: 323 VLFNRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTE 381
+L NRQPSLH+ SIM H+ARI+ +T R + S C YNADFDGDEMN H PQ+E AR E
Sbjct: 525 LLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAE 584
Query: 382 ALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRV 441
A L+ V +N PK+G L QD + S ++ + F++R + + + G +
Sbjct: 585 AYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLV-FQGLSQLKK 643
Query: 442 D--LPTPAILKPVELWTGKQLFSVLIR---PHANMRVYVNLTVKEKTYSNKLIRT----- 491
D L P ILKP LW+GKQ+ S +I P R+ ++ K + + R
Sbjct: 644 DIKLLPPTILKPAVLWSGKQILSTIIINIIPEGYERINLDSFAKIAGKNWNVSRPRPPIC 703
Query: 492 ----EGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHAT 547
EG++ ++ V RN EL+ G L K G GL + YG +
Sbjct: 704 GTNPEGNDL--------SESQVQIRNGELLVGVLDKQQYG-ATTYGLIHCMYELYGGDVS 754
Query: 548 SGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKL 607
+ + K+ ++ GF++G+ D+ K+ K+I E V N + E L
Sbjct: 755 TLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALE--L 812
Query: 608 QLKPGCDA-AQTLEA---------VITD-----ILNRIREDAGKACM-----GSLPWRNS 647
+ +P D + +EA V+ D +L+ D C+ P N
Sbjct: 813 EDEPPHDELVEKMEAAYVKDSKFRVLLDRKYKSLLDGYTNDINSTCLPRGLITKFPSNNL 872
Query: 648 PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVAN 707
L M G+KGS +N Q+ +GQ + G+R P +SLP F P + GF+
Sbjct: 873 QL-MVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDG 931
Query: 708 SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGC 767
F +G+ +FFFH M GREGL+DTAVKT+ +GY+ R LIK LE LS+ YD +VR++
Sbjct: 932 RFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNS 991
Query: 768 IVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYL-SPQQVSEIV--EKQ 824
+VQFLYG+DG+D + + D L A PA + + +Q++++ EK
Sbjct: 992 VVQFLYGEDGLDILKSKF-FNDKFCADFLTQNATAILRPAQLQLMKDEEQLAKVQRHEKH 1050
Query: 825 LAAYGKESCSE---AF------------------LNS---LRKFFEG------QQDKLDK 854
+ ++ K+ ++ AF +NS R+F EG + D DK
Sbjct: 1051 IRSWEKKKPAKLRAAFTHFSEELREEVEVKRPNEINSKTGRRRFDEGLLKLWKKADAEDK 1110
Query: 855 KIK--------------FVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVK 900
+ + +D+ + S E T K K+ +T RVK
Sbjct: 1111 ALYRKKYARCPDPTVAVYKQDLYYGSVS----ERTRKLITDYAKRKPALKETIADIMRVK 1166
Query: 901 RVEA----GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN-GAKRI 955
+++ G +G I AQSIGEP TQMTL TFHFAG MN+T G+PR++EI+ + I
Sbjct: 1167 TIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNI 1226
Query: 956 STP 958
TP
Sbjct: 1227 KTP 1229
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 2/163 (1%)
Query: 1084 RVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGI-DGCKTKSNHIFEVQQTLG 1142
+ V+ + + KR + G L +G + + I D + SN I + +T G
Sbjct: 1476 KSVVHQVQHIKRAIIYKGNDDDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYG 1535
Query: 1143 IEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLA 1202
IEAA I+ E++ K +G+++D+RH+ L+AD MTF G ++R G++ S L
Sbjct: 1536 IEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGMEH-SSSPLQQM 1594
Query: 1203 SFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
SFE + L +A+ GR D + S +++G+P+ GTG ++
Sbjct: 1595 SFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFEL 1637
>sp|P16355|RPA1_TRYBB DNA-directed RNA polymerase I subunit RPA1 OS=Trypanosoma brucei
brucei GN=TRP11 PE=1 SV=1
Length = 1744
Score = 357 bits (915), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 288/963 (29%), Positives = 464/963 (48%), Gaps = 116/963 (12%)
Query: 104 EVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDI------TERLKRIIQTNASL 157
+V+ SER + + I VPP+ +R S G + N+N + T L I+
Sbjct: 325 KVVPASERYKLFFLDRILVPPLPLRLS---SGVRVNDNGLIIPDEQTRALSDILG----- 376
Query: 158 QQELVEANSAFKSLAGWET----LQVEVAQYIN-SDVRGVPFSMQVARPLSGFVQRLKGK 212
VE F +L+ T + + +N S++R + +V + V K
Sbjct: 377 ---FVEQIECFHTLSANSTNGRSFITDAQRAVNESNLRNL--QQKVDEFYAEIVNSFAKK 431
Query: 213 QGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVS---DHNIEKLR 269
+G FR N+ GKRV R+VISPDP ++ EV +P +AR L++PE+V+ + L+
Sbjct: 432 EGLFRMNMMGKRVNQACRSVISPDPFVEPNEVLLPRPLARALSFPEQVTCFAPARMNLLK 491
Query: 270 QCIQNGPDKYPGARMI--RYPDGTARVL----YGKFRNQLAVEL----KSGC--IVDRHL 317
C+ NGP KYPGA I R+ +G R + + R Q A +SG IV RH+
Sbjct: 492 HCVVNGPRKYPGATHIELRHANGEIRSVDLNVPEQTRRQHAARFFAMAQSGVTLIVYRHI 551
Query: 318 EDGDVVLFNRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTE 376
+GD V+FNRQP+LH+ S+M +R +++ +T+RF+ N +NADFDGDEMN+HVPQ+
Sbjct: 552 LNGDRVIFNRQPTLHKPSMMGYRVKVLSGSKTIRFHYVNGNSFNADFDGDEMNVHVPQSI 611
Query: 377 EARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGD 436
E R E LM N P +G + QD + + L+T +D F+D + F + Y G
Sbjct: 612 ETRAEVETLMDANINYLVPTSGRPIRGLIQDHVAAGVLVTLRDKFFDHSTF-VQLVYNGV 670
Query: 437 G---MDRVDL------PTPAILKPVELWTGKQLFSVLIRPHANMR------------VYV 475
G + V + P PAIL P +WTGKQL SV++R + + + +
Sbjct: 671 GPYIQENVGITLAELIPIPAILMPRPMWTGKQLISVMVRFSSGLSAASDCGREIEGGITL 730
Query: 476 NLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLY 535
T + + + I + +R ++ D V F NSELI+G + K LG N +
Sbjct: 731 KGTSQIQPSAFDRIPAGSCDAVRAKSGAVVDSTVMFANSELITGFMCKKQLGASNMSAPH 790
Query: 536 SVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVC 595
V YG H T ++ + G S+ +DD+ + + C
Sbjct: 791 HVY-ELYGPHRTGQLFAAFGRVLLLALRKEGLSLAMDDM------------FLVDEERRC 837
Query: 596 NVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW-RNSPLIMSQC 654
++ +++ ++ L + D T +I D +I+++ M +P+ +N L+M+
Sbjct: 838 DL-LRKLDDIALDVP---DEEATAAPMIADYATKIQQEFVPQRM-LVPFPKNHLLLMTIS 892
Query: 655 GSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLS 714
G+KGS +N +QM +GQQ G R ++LP F K + GF SF SG+
Sbjct: 893 GAKGSNLNATQMSLQLGQQLFDGLRVKRMNSSKTLPSFFTNEKRARSFGFAMGSFASGIR 952
Query: 715 ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYG 774
E+ H M GR+GL+DTAVKT+ +G++ R LIK LE L + +D +VR++ G ++QF+YG
Sbjct: 953 PAEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHWDRTVRDSNGSVIQFMYG 1012
Query: 775 DDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCS 834
DG+DP + + D ++ K A + + + K++ + +
Sbjct: 1013 GDGLDPCKASTLTAWEMMKDNVVDVSKRFGGDASESVAGAEDGAAAGLKEMRNEDGKPTT 1072
Query: 835 EAFLN------------------SLRKFFEGQQD-KLDKKIKFVEDIGWDDKSQI---LE 872
EA N SL ++ + D L +K+ + WD K Q+ L+
Sbjct: 1073 EAVQNAHMEQQLSTYPLPASLDKSLSEYLCKKADFPLFRKVSTLAR--WDAKQQLKERLQ 1130
Query: 873 EVTHKTSGITEKQLEVFIQTCFSRYRVKRV-EAGTAIGAIGAQSIGEPGTQMTLKTFHFA 931
+ K G EK L +R R+ + E G +G + AQ+ GEP TQMTL TFH A
Sbjct: 1131 QRRQKWVGAFEKTLADIT----ARRRLWALCEPGEPVGLLAAQAAGEPSTQMTLNTFHTA 1186
Query: 932 GVASMNITQGVPRIKEIINGAK----RISTPIITAELECNDNENAARVVKGRIEKTLLGQ 987
G ++T+G+PR++E++ A + P+ A E D + A++++ + L
Sbjct: 1187 GSTVSHVTEGIPRLRELLIYASVNKAAVVVPVTNATEE--DEKVIAKMLRAGVAAKLTDC 1244
Query: 988 VAK 990
+AK
Sbjct: 1245 LAK 1247
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1131 SNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFG 1190
S I ++ GIE+ + DE+N+ + ++D RH+ L+AD T RG G
Sbjct: 1616 STDIRDMGTYFGIESGYAALYDELNKLFNRY--NVDPRHLSLIADTSTHRGRWENFNFTG 1673
Query: 1191 IQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDA 1250
+ S L +F + L A G D +E S I++G +GT +++ A
Sbjct: 1674 VISTSASPLFQMTFASSKRWLHRAVSRGMSDDLESFSSAIMVGERPRVGTASVRLSTDTA 1733
Query: 1251 V 1251
+
Sbjct: 1734 I 1734
>sp|O54889|RPA1_RAT DNA-directed RNA polymerase I subunit RPA1 OS=Rattus norvegicus
GN=Polr1a PE=1 SV=1
Length = 1716
Score = 353 bits (906), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 231/646 (35%), Positives = 334/646 (51%), Gaps = 51/646 (7%)
Query: 174 WETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVI 233
W LQ V +SD+ + + G Q L+ K+G FR ++ GKRV+Y R+VI
Sbjct: 398 WIRLQSHVNIVFDSDMDKL-----MLEKYPGIRQILEKKEGLFRKHMMGKRVDYAARSVI 452
Query: 234 SPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTAR 293
PD + E+ IP+ A LTYP+ V+ N+++LRQ + NGP+ +PGA M+ DG+
Sbjct: 453 CPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRT 512
Query: 294 VLYG---KFRNQLAVEL----------KSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 340
L R +A +L + +V RH+++GD++L NRQP+LHR SI HR
Sbjct: 513 ALSAVDATQREAVAKQLLTPSTGIPKPQGAKVVCRHVKNGDILLLNRQPTLHRPSIQAHR 572
Query: 341 ARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 399
A I+P + LR + + C YNADFDGDEMN H PQ+E R EA +L PK+G+
Sbjct: 573 AHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQ 632
Query: 400 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMG--DGMDRVDLPTPAILKPVELWTG 457
L QD + S +T + F+ R + + Y G D + RV L PAILKP LWTG
Sbjct: 633 PLAGLIQDHMVSGANMTIRGCFFTREQY-MELVYRGLTDKVGRVKLFPPAILKPFPLWTG 691
Query: 458 KQLFS-VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDE--EIRIETMCPNDGFVYFRNS 514
KQ+ S +LI +NLT K K S ++ + + ++MC + V R
Sbjct: 692 KQVVSTLLINIIPEDYTPLNLTGKAKIGSKAWVKEKPRPVPDFDPDSMCESQ--VIIREG 749
Query: 515 ELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNH-GFSIGIDD 573
EL+ G L KA G+ + GL YG + + LA+L ++ + GF++G++D
Sbjct: 750 ELLCGVLDKAHYGS-SAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVED 808
Query: 574 VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ---------------- 617
+ K + ++I E+ + ++ L CD Q
Sbjct: 809 ILVKPNADVMRQRIIEESTQCGPRAVRA--ALNLPEAASCDEIQGKWQDAIWRKDQRDFN 866
Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSP----LIMSQCGSKGSPINISQMVACVGQQ 673
++ + +N + KACM R P +M Q G+KGS +N Q+ +GQ
Sbjct: 867 MIDMKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQI 926
Query: 674 SVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733
+ GRR P +SLP F P A GFV F +G+ EFFFH M GREGLVDTA
Sbjct: 927 ELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTA 986
Query: 734 VKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
VKT+ +GY+ R +IK LE L IQYD +VR++ G +VQFLYG+DG+D
Sbjct: 987 VKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLD 1032
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 10/191 (5%)
Query: 1059 KIHFELYSLKNVLPM-VIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQA 1117
KI+F++ SL L IV K + R ++ E K +K++ L EG L
Sbjct: 1531 KINFDMSSLVVSLAHNAIVYTTKGITRCLLNETINSK-------NEKEFVLNTEGINLPE 1583
Query: 1118 VMG-AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADL 1176
+ +E +D + SN I V T GIEAA I EI + +G+++D RH+ L+AD
Sbjct: 1584 LFKYSEVLDLRRLYSNDIHAVANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADY 1643
Query: 1177 MTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPM 1236
M F G + RFGIQ S L +FE + L A++ G D ++ S C+++G +
Sbjct: 1644 MCFEGVYKPLNRFGIQS-SSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVV 1702
Query: 1237 PLGTGILKIRQ 1247
GTG+ +++Q
Sbjct: 1703 KGGTGLFELKQ 1713
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 100/199 (50%), Gaps = 24/199 (12%)
Query: 806 PAGQRYLSPQQVSEIVEKQLAAYGKES--CSEAFLNSLRK--FFEGQQDKLDKKIKFVED 861
P Q+ L Q E+ E+ Y K + C + L+ R F + +KKI
Sbjct: 1122 PETQQML--QMWHELDEQSRRKYQKRAAPCPDPSLSVWRPDIHFASVSETFEKKI----- 1174
Query: 862 IGWDDKSQ---ILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGE 918
DD SQ E +H S ++ +L +Q + R + G A+G + AQSIGE
Sbjct: 1175 ---DDYSQEWAAQAEKSHNRSELSLDRLRTLLQLKWQR---SLCDPGEAVGLLAAQSIGE 1228
Query: 919 PGTQMTLKTFHFAGVASMNITQGVPRIKEIIN-GAKRISTPIITAELECNDNENAARV-- 975
P TQMTL TFHFAG MN+T G+PR++EI+ + I TP+++ + N + RV
Sbjct: 1229 PSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPV-FNTKKALRRVKS 1287
Query: 976 VKGRIEKTLLGQVAKSIKI 994
+K ++ + LG+V + + I
Sbjct: 1288 LKKQLTRVCLGEVLQKVDI 1306
>sp|O35134|RPA1_MOUSE DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus GN=Polr1a
PE=1 SV=2
Length = 1717
Score = 353 bits (905), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 226/616 (36%), Positives = 325/616 (52%), Gaps = 46/616 (7%)
Query: 204 GFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDH 263
G Q L+ K+G FR ++ GKRV+Y R+VI PD + E+ IP+ A LTYP+ V+
Sbjct: 423 GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPW 482
Query: 264 NIEKLRQCIQNGPDKYPGARMIRYPDGTARVLY---GKFRNQLAVELKSGC--------- 311
N+++LRQ + NGP+ +PGA M+ DG+ L R +A +L +
Sbjct: 483 NVQELRQAVINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTPATGAPKPQGT 542
Query: 312 -IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMN 369
+V RH+++GD++L NRQP+LHR SI HRARI+P + LR + + C YNADFDGDEMN
Sbjct: 543 KVVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMN 602
Query: 370 MHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 429
H PQ+E R EA +L PK+G+ L QD + S +T + F+ R + +
Sbjct: 603 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQY-M 661
Query: 430 MCCYMG--DGMDRVDLPTPAILKPVELWTGKQLFS-VLIRPHANMRVYVNLTVKEKTYSN 486
Y G D + RV L PAILKP LWTGKQ+ S +LI +NL+ K K S
Sbjct: 662 ELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLNLSGKAKIGSK 721
Query: 487 KLIRTEGDE--EIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGA 544
++ + + ++MC + V R EL+ G L KA G+ + GL YG
Sbjct: 722 AWVKEKPRPIPDFDPDSMCESQ--VIIREGELLCGVLDKAHYGS-SAYGLVHCCYEIYGG 778
Query: 545 HATSGCMNRLAKLSARWIGNH-GFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYN 603
+ + LA+L ++ + GF++G++D+ K + ++I E+ + +K
Sbjct: 779 ETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKA-- 836
Query: 604 EGKLQLKPGCDAAQ----------------TLEAVITDILNRIREDAGKACMGSLPWRNS 647
L CD Q ++ + +N + KACM R
Sbjct: 837 ALSLPETASCDEIQGKWQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKACMPLGLHRQF 896
Query: 648 P----LIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKG 703
P +M Q G+KGS +N Q+ +GQ + GRR P +SLP F P A G
Sbjct: 897 PENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGG 956
Query: 704 FVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRN 763
FV F +G+ EFFFH M GREGLVDTAVKT+ +GY+ R +IK LE L IQYD +VR+
Sbjct: 957 FVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRD 1016
Query: 764 AGGCIVQFLYGDDGMD 779
+ G +VQFLYG+DG+D
Sbjct: 1017 SDGSVVQFLYGEDGLD 1032
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 20/197 (10%)
Query: 806 PAGQRYLSPQQVSEIVEKQLAAYGKES--CSEAFLNSLRK--FFEGQQDKLDKKIKFVED 861
P Q+ L Q ++ E+ Y K + C + L+ R +F + +KKI +D
Sbjct: 1122 PETQQML--QMWYDLDEESRWKYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKI---DD 1176
Query: 862 IGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGT 921
+ +Q E ++K S ++ +L +Q + R + G A+G + AQSIGEP T
Sbjct: 1177 FSQEWAAQ--AERSYKKSELSLDRLRTLLQLKWQR---SLCDPGEAVGLLAAQSIGEPST 1231
Query: 922 QMTLKTFHFAGVASMNITQGVPRIKEIIN-GAKRISTPIITAELECNDNENAARVVKG-- 978
QMTL TFHFAG MN+T G+PR++EI+ + I TP+++ + D + A + VK
Sbjct: 1232 QMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPV--FDTKKALKKVKSLK 1289
Query: 979 -RIEKTLLGQVAKSIKI 994
R+ + LG+V + + I
Sbjct: 1290 KRLTRVCLGEVLQKVDI 1306
Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 10/191 (5%)
Query: 1059 KIHFELYSLKNVLPM-VIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQA 1117
KI+F++ SL L IV K + R ++ E K +K+ L EG L
Sbjct: 1532 KINFDMSSLVVSLAHKAIVYTTKGITRCLLNETTNSK-------NEKELVLNTEGINLPE 1584
Query: 1118 VMG-AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADL 1176
+ +E +D + SN I + T GIEAA I EI + +G+++D RH+ L+AD
Sbjct: 1585 LFKYSEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADY 1644
Query: 1177 MTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPM 1236
M F G + RFGIQ S L +FE + L A++ G D ++ S C+++G +
Sbjct: 1645 MCFEGVYKPLNRFGIQS-SSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVV 1703
Query: 1237 PLGTGILKIRQ 1247
GTG+ +++Q
Sbjct: 1704 KGGTGLFELKQ 1714
>sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1 (Fragments) OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB1 PE=3 SV=2
Length = 1579
Score = 327 bits (839), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 239/711 (33%), Positives = 359/711 (50%), Gaps = 115/711 (16%)
Query: 651 MSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFY 710
M GSKGS INISQM ACVGQQ V G+R P GF DRSLPHF + P +KGFV NS+
Sbjct: 578 MVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYL 637
Query: 711 SGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQ 770
GL+ EFFFH M GREGL+DTAVKTA+TGY+ RRL+KALED+ + YD + RN+ G I+Q
Sbjct: 638 RGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQ 697
Query: 771 FLYGDDGMDPANMEGKS-----GEPLNFDR-----LLMK---VKATCPPAGQRYLSPQQV 817
F+YG+DG+D +E +S G +F+R LL ++ + +G+ +
Sbjct: 698 FVYGEDGVDGTQVESQSVDVIPGTDESFERRYRVDLLDPEKCIRDSLLESGKEVRGDVNL 757
Query: 818 SEIVEKQLAA------YGKESCSEAFLN---------SLRKFFEGQQDKLDKKIKFVEDI 862
+++++ Y +E C F N +LR+ + Q D+
Sbjct: 758 QRVLDEEYEQLCNDRRYLREVC---FTNGDYTWPLPVNLRRIIQNAQQLFHGGRHKASDL 814
Query: 863 GWDDKSQILEEVTHK------TSGITEKQLE--VFIQTCFSR-----------YRVKRVE 903
++ + ++E+ K S + ++ E + C R +R+ R+
Sbjct: 815 RLEEIVEGVKELCKKLLVLRGDSPLVKESQENATLLFQCLVRSRLATRRVIEEFRLNRMS 874
Query: 904 AGTAIGAIGAQ---SIGEPG---------------TQMTLKTFHFAGVASMNITQGVPRI 945
A+G I Q S+ PG TQMTL TFH+AGV+S N+T GVPR+
Sbjct: 875 FEWAMGEIETQFQKSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRL 934
Query: 946 KEIINGAKRISTPIITAELECN--DNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASI 1003
KEI+N AK I TP +T LE + + A+VV+ IE T L V S +I S
Sbjct: 935 KEILNVAKNIKTPALTVYLEKDIAADIEKAKVVQSAIEHTTLKNVTASTEIFYDPDPRST 994
Query: 1004 VIALDMETIQDAHLCINADIVKESIV-QTPK-IKLKQQHIKVLDFRKLEIFPPVDKSKIH 1061
V+ D +T++ A+ I + V+ESI Q+P ++L+ K+LD ++L + +K +
Sbjct: 995 VLEEDYDTVE-AYFAIPDEKVEESIEKQSPWLLRLELDRAKMLD-KQLTMAQVAEKISQN 1052
Query: 1062 F--ELYSL-------KNVLPMVIVKGIKTVERVVIAEKEKEKRKVK-------------- 1098
F +L+ + K ++ +V+ K+++ V AE+++ ++++
Sbjct: 1053 FGEDLFVIWSDDTADKLIIRCRVVRDPKSLDEDVDAEEDQILKRIEAHMLESISLRGIQG 1112
Query: 1099 ---------------ENGEKKK---YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQT 1140
E GE K+ + L +G L VM G+D +T SN+ E+
Sbjct: 1113 ITRVFMMQHKLSLPDETGEFKQGQEWVLETDGVNLADVMAVPGVDAKRTYSNNFIEILSV 1172
Query: 1141 LGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLM 1200
LGIEA R + EI + G ++ RHM LL D+MT RG ++ ITR GI + D LM
Sbjct: 1173 LGIEATRSALFKEILNVIAFDGSYVNYRHMALLVDVMTARGHLMAITRHGINRADTGALM 1232
Query: 1201 LASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAV 1251
SFE+T + L A D G+SE +++G PLGTG + D +
Sbjct: 1233 RCSFEETVEILLEAGAAAELDDCHGISENVVLGQLAPLGTGAFDVMVDDKI 1283
Score = 268 bits (684), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 228/366 (62%), Gaps = 19/366 (5%)
Query: 85 ILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIITNIAVPPIAIRPSVIMDGSQSNEN 141
+L P +L +FK + DC L +E RPE ++IT + VPP +RPS+ + + E+
Sbjct: 205 LLTPSEILNVFKHINSEDCVRLGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGED 264
Query: 142 DITERLKRIIQTNASLQQELVEAN-----SAFKSLAGWETLQVEVAQYINSDVRGVPFSM 196
D+T +L +I+ N ++Q+ ++ + S F++L LQ VA Y+++D+ G P ++
Sbjct: 265 DLTFKLADVIKANINVQRLELDGSPQHVISEFEAL-----LQFHVATYMDNDIAGQPQAL 319
Query: 197 Q-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILT 255
Q RP+ RLKGK+GR RGNL GKRV+++ RTVIS DPNL + +V +PI +AR LT
Sbjct: 320 QKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLT 379
Query: 256 YPERVSDHNIEKLRQCIQNGPDKYPGAR-MIRYPDGTARVLYGKFRNQLAVELKSGCIVD 314
YPE V+ +NI +L + ++NGP+++PGA+ +IR + Y K +A L+ G V+
Sbjct: 380 YPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIA--LQYGWKVE 437
Query: 315 RHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQ 374
RHL D D VLFNRQPSLH+MS+MCHR ++MP+ T R N SV +PYNADFDGDEMN+HVPQ
Sbjct: 438 RHLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 497
Query: 375 TEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF--YDRAAFSLMCC 432
+ E R E + V + +P++ + ++ QD L +T +D F YD+ L
Sbjct: 498 SPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIEYDQVMNMLYWI 557
Query: 433 YMGDGM 438
DG+
Sbjct: 558 PDWDGV 563
>sp|Q58445|RPOA1_METJA DNA-directed RNA polymerase subunit A' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoA1 PE=3 SV=2
Length = 1341
Score = 286 bits (731), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 170/450 (37%), Positives = 261/450 (58%), Gaps = 29/450 (6%)
Query: 356 CNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLI 415
C PYNADFDGDEMN+HVPQ+EEAR EA LM V+ ++ +P+ G ++ + DF++ ++L+
Sbjct: 912 CPPYNADFDGDEMNLHVPQSEEARAEAEALMLVEKHILSPRFGGPIIGAIHDFISGAYLL 971
Query: 416 TRKDTFYDRAAFSLMCCYMGDGM---DRVDLPTPAILKPVELWTGKQLFSVLIRPHANMR 472
T D A L + D + D+V+ P L++GK++FS + N+R
Sbjct: 972 TSNYFTKDEATLILRSGGIKDELWEPDKVENGVP-------LYSGKKIFSKALPKGLNLR 1024
Query: 473 VYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKD 532
Y K+ R ++ + C D +V ++ ELI G + K G G +
Sbjct: 1025 -----------YKAKICRKC---DVCKKEECEYDAYVVIKDGELIKGVIDKN--GYGAEA 1068
Query: 533 GL-YSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISEN 591
GL +++++G A ++ K++ R + GF+ GIDD +E + K++ E
Sbjct: 1069 GLILHTIVKEFGPEAGRKFLDSATKMAIRAVMLRGFTTGIDDEDLPEEALKEIEKVLDEA 1128
Query: 592 YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIM 651
E I++Y G+L+L PG + ++ EA I+++L R+ AG L N +IM
Sbjct: 1129 EEKVKEIIEKYERGELELLPGLNLEESREAYISNVLREARDKAGAIAERYLGLDNHAVIM 1188
Query: 652 SQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYS 711
+ G++G+ +N++QM AC+GQQSV G+R G+ R LPHF + + GFV +S+
Sbjct: 1189 AVTGARGNILNLTQMAACLGQQSVRGKRIFRGYRGRVLPHFEKGDLGARSHGFVRSSYKK 1248
Query: 712 GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQF 771
GLS TEFFFH MGGREGLVD AV+TA +GYM RRLI AL+DL ++D +VR++ G ++QF
Sbjct: 1249 GLSPTEFFFHAMGGREGLVDQAVRTAQSGYMQRRLINALQDLKTEFDGTVRDSRGIMIQF 1308
Query: 772 LYGDDGMDPANMEGKSGEPLNFDRLLMKVK 801
YG+DG+DP M G+ +N DR++ KVK
Sbjct: 1309 KYGEDGIDP--MLADRGKAVNIDRIIDKVK 1336
Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/373 (38%), Positives = 210/373 (56%), Gaps = 41/373 (10%)
Query: 28 KAVKCPRCGYINGMVKKAVAVLGIIH-------DRSKVTESLQEFASAIT---HTKESKA 77
KAV CP CG + K +L + ++ +V E + + AS +T H E K
Sbjct: 99 KAV-CPHCGRVAISETKRKEILEKMEKLERDGGNKWEVCEEVYKEASKVTICPHCGEIKY 157
Query: 78 AVNV---ATY---------ILNPVNVLFLFKRMTDTDCEVLYLS---ERPEKLIITNIAV 122
+ TY L P +V + +++ D DC +L L+ RPE +++T + V
Sbjct: 158 DIKFEKPTTYYRIDGNEEKTLTPSDVREILEKIPDEDCILLGLNPEVARPEWMVLTVLPV 217
Query: 123 PPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVA 182
PP+ +RPS+ ++ + +E+D+T +L II+ N L++ + W LQ V
Sbjct: 218 PPVTVRPSITLETGERSEDDLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHVN 277
Query: 183 QYINSDVRGVP-FSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKI 241
Y +++ G+P + RPL QRLKGK+GRFR NL+GKRV ++ RTVISPDP L I
Sbjct: 278 TYFDNEAPGIPPAKHRSGRPLKTLAQRLKGKEGRFRYNLAGKRVNFSSRTVISPDPCLSI 337
Query: 242 TEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA----RMIRYPDGTARVLYG 297
EV +P +A+ LT PE+V+ +NIE++RQ ++NG +K+PG R + DGT +
Sbjct: 338 NEVGVPEVVAKELTVPEKVTKYNIERIRQLLRNGSEKHPGVNYVIRKMIGRDGTEQEYKV 397
Query: 298 KF----RNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNE 353
K ++ A ++ G IV+RHL DGD+VL+NRQPSLHRMSIM HR R++P+RT R N
Sbjct: 398 KITESNKDFWAENIREGDIVERHLMDGDIVLYNRQPSLHRMSIMAHRVRVLPYRTFRHNL 457
Query: 354 SVCNPYNADFDGD 366
VC DGD
Sbjct: 458 CVC------VDGD 464
>sp|A4VSK3|RPOC_STRSY DNA-directed RNA polymerase subunit beta' OS=Streptococcus suis
(strain 05ZYH33) GN=rpoC PE=3 SV=2
Length = 1215
Score = 275 bits (702), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 278/1045 (26%), Positives = 448/1045 (42%), Gaps = 213/1045 (20%)
Query: 111 RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
+PE +I+ + V P +RP V +DG + +D+ E +R+I N L + L+E N+
Sbjct: 223 KPEWMILNILPVIPPDLRPMVQLDGGRFAASDLNELYRRVINRNNRLAR-LLELNAPGII 281
Query: 171 LAGWE-TLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
+ + LQ V I++ RG P + +RPL LKGKQGRFR NL GKRV+++G
Sbjct: 282 VQNEKRMLQEAVDALIDNGRRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSG 341
Query: 230 RTVISPDPNLKITEVAIPIRMARILTYP-------ERVSDHNIEKLRQCIQNGPDKYPGA 282
R+VI+ P LK+ + +P MA L P R N++ ++ I+ G D+
Sbjct: 342 RSVIAVGPTLKMYQCGVPREMAIELFKPFVMREIVARDIAGNVKAAKRLIERGDDR---- 397
Query: 283 RMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRAR 342
++ ++ H VL NR P+LHR+ I
Sbjct: 398 ------------IWDILEE----------VIKEH-----PVLLNRAPTLHRLGIQAFEPV 430
Query: 343 IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILV 402
++ + LR + VC YNADFDGD+M +HVP +EEA+ EA +LM ++ PK+G+ +V
Sbjct: 431 LIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHILNPKDGKPVV 490
Query: 403 ASTQDFLTSSFLITRKDT--------FYD--------RAAFSLMCCYMGDGMDRVDLPTP 446
+QD + ++ +T +D F D R + + +G D +D P
Sbjct: 491 TPSQDMVLGNYYLTMEDAGREGEGMVFKDADEAVMAYRNGYVHLHTRVGIATDSLDKPWK 550
Query: 447 AILKPVELWT--GKQLFSVLI---RPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET 501
K + T GK LF+ ++ P+ NLT E T + D + I
Sbjct: 551 DNQKHKVMMTTVGKILFNAIMPEGLPYLQEPNNANLT--EGTPDKYFLEPGSDIKAAIAE 608
Query: 502 MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARW 561
+ N F K LGN + + + + + TS ++RL L
Sbjct: 609 LPINPPF-------------KKKNLGN-----IIAEIFKRFRTTETSALLDRLKDLGYYH 650
Query: 562 IGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEA 621
G ++GI D+ + D K ++I E++E + K Q + G A
Sbjct: 651 STLAGLTVGIADIP----VIDNKAEIIEESHE-------RVEQIKKQFRRGMITDDERYA 699
Query: 622 VITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
+TD +E K + +N ++M G++G+ N SQ+ G S AP
Sbjct: 700 AVTDEWRSAKEKLEKRLVEKQDPKNPIVMMMDSGARGNISNFSQLAGMRGLMS-----AP 754
Query: 682 NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
NG I LP + ++F GLS E FF T G R+G+ DTA+KTAD+GY
Sbjct: 755 NGRI-MELP--------------ILSNFREGLSVLEMFFSTHGARKGMTDTALKTADSGY 799
Query: 742 MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDP--ANMEGKSGEPLNFDRLLMK 799
++RRL+ +D+ I+ D+ + G I G + ++P ++G+ K
Sbjct: 800 LTRRLVDVAQDVIIREDDCGTDRGLDIRSITDGKEMIEPLEERLQGR----------YTK 849
Query: 800 VKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFV 859
P G + P Q+
Sbjct: 850 KTVKHPETGAVIIGPNQL----------------------------------------IT 869
Query: 860 EDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKR------------VEAGTA 907
EDI + + +E+VT ++ VF TC +R+ V R VE G A
Sbjct: 870 EDIAREIVNAGVEQVTIRS---------VF--TCNTRHGVCRHCYGINLATGDAVEVGEA 918
Query: 908 IGAIGAQSIGEPGTQMTLKTFHFAGVAS-MNITQGVPRIKEIINGAKRISTPIIT---AE 963
+G I AQSIGEPGTQ+T++TFH GVAS +ITQG+PR++EI +IT E
Sbjct: 919 VGTIAAQSIGEPGTQLTMRTFHTGGVASNSDITQGLPRVQEIFEARNPKGEAVITEVKGE 978
Query: 964 LECNDNENAARV----VKGRI-EKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLC 1018
+ + + + R VKG+ E + +K+ + ++A AL +IQ L
Sbjct: 979 VIAIEEDASTRTKKVFVKGKTGEGEYVVPFTARMKVEVGDQVARGA-ALTEGSIQPKRLL 1037
Query: 1019 INADIVK---------ESIVQTPKIKLKQQHIKVLD---FRKLEIFPPVDKSKIHFELYS 1066
D++ + + ++ +++ +HI+V+ RK+ + P D + L
Sbjct: 1038 EVRDVLAVETYLLSEVQKVYRSQGVEIGDKHIEVMVRQMLRKVRVMDPGDTDLLMGTLMD 1097
Query: 1067 LKNVL----PMVIVKGIKTVERVVI 1087
+ + +VI GI R V+
Sbjct: 1098 ITDFTDANAEVVIAGGIPATARPVL 1122
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 47/180 (26%)
Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
R+ VE G Q GA +G + + EV+ L +E ++ E+ + ++ G+ I
Sbjct: 1011 RMKVE-VGDQVARGAALTEGS-IQPKRLLEVRDVLAVET---YLLSEVQKVYRSQGVEIG 1065
Query: 1167 KRHM--------------------MLLADLM--------------------TFRGEVLGI 1186
+H+ +L+ LM T R ++GI
Sbjct: 1066 DKHIEVMVRQMLRKVRVMDPGDTDLLMGTLMDITDFTDANAEVVIAGGIPATARPVLMGI 1125
Query: 1187 TRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIR 1246
T+ ++ S L ASF++T L +A++ G+ D + G+ E +I+G +P GTG+ + R
Sbjct: 1126 TKASLET--NSFLSAASFQETTRVLTDAAIRGKRDNLLGLKENVIIGKIIPAGTGMARYR 1183
>sp|A4VYU4|RPOC_STRS2 DNA-directed RNA polymerase subunit beta' OS=Streptococcus suis
(strain 98HAH33) GN=rpoC PE=3 SV=2
Length = 1215
Score = 275 bits (702), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 278/1045 (26%), Positives = 448/1045 (42%), Gaps = 213/1045 (20%)
Query: 111 RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
+PE +I+ + V P +RP V +DG + +D+ E +R+I N L + L+E N+
Sbjct: 223 KPEWMILNILPVIPPDLRPMVQLDGGRFAASDLNELYRRVINRNNRLAR-LLELNAPGII 281
Query: 171 LAGWE-TLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
+ + LQ V I++ RG P + +RPL LKGKQGRFR NL GKRV+++G
Sbjct: 282 VQNEKRMLQEAVDALIDNGRRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSG 341
Query: 230 RTVISPDPNLKITEVAIPIRMARILTYP-------ERVSDHNIEKLRQCIQNGPDKYPGA 282
R+VI+ P LK+ + +P MA L P R N++ ++ I+ G D+
Sbjct: 342 RSVIAVGPTLKMYQCGVPREMAIELFKPFVMREIVARDIAGNVKAAKRLIERGDDR---- 397
Query: 283 RMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRAR 342
++ ++ H VL NR P+LHR+ I
Sbjct: 398 ------------IWDILEE----------VIKEH-----PVLLNRAPTLHRLGIQAFEPV 430
Query: 343 IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILV 402
++ + LR + VC YNADFDGD+M +HVP +EEA+ EA +LM ++ PK+G+ +V
Sbjct: 431 LIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHILNPKDGKPVV 490
Query: 403 ASTQDFLTSSFLITRKDT--------FYD--------RAAFSLMCCYMGDGMDRVDLPTP 446
+QD + ++ +T +D F D R + + +G D +D P
Sbjct: 491 TPSQDMVLGNYYLTMEDAGREGEGMVFKDADEAVMAYRNGYVHLHTRVGIATDSLDKPWK 550
Query: 447 AILKPVELWT--GKQLFSVLI---RPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIET 501
K + T GK LF+ ++ P+ NLT E T + D + I
Sbjct: 551 DNQKHKVMMTTVGKILFNAIMPEGLPYLQEPNNANLT--EGTPDKYFLEPGSDIKAAIAE 608
Query: 502 MCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARW 561
+ N F K LGN + + + + + TS ++RL L
Sbjct: 609 LPINPPF-------------KKKNLGN-----IIAEIFKRFRTTETSALLDRLKDLGYYH 650
Query: 562 IGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEA 621
G ++GI D+ + D K ++I E++E + K Q + G A
Sbjct: 651 STLAGLTVGIADIP----VIDNKAEIIEESHE-------RVEQIKKQFRRGMITDDERYA 699
Query: 622 VITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAP 681
+TD +E K + +N ++M G++G+ N SQ+ G S AP
Sbjct: 700 AVTDEWRSAKEKLEKRLVEKQDPKNPIVMMMDSGARGNISNFSQLAGMRGLMS-----AP 754
Query: 682 NGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGY 741
NG I LP + ++F GLS E FF T G R+G+ DTA+KTAD+GY
Sbjct: 755 NGRI-MELP--------------ILSNFREGLSVLEMFFSTHGARKGMTDTALKTADSGY 799
Query: 742 MSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDP--ANMEGKSGEPLNFDRLLMK 799
++RRL+ +D+ I+ D+ + G I G + ++P ++G+ K
Sbjct: 800 LTRRLVDVAQDVIIREDDCGTDRGLDIRSITDGKEMIEPLEERLQGR----------YTK 849
Query: 800 VKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFV 859
P G + P Q+
Sbjct: 850 KTVKHPETGAVIIGPNQL----------------------------------------IT 869
Query: 860 EDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKR------------VEAGTA 907
EDI + + +E+VT ++ VF TC +R+ V R VE G A
Sbjct: 870 EDIAREIVNAGVEQVTIRS---------VF--TCNTRHGVCRHCYGINLATGDAVEVGEA 918
Query: 908 IGAIGAQSIGEPGTQMTLKTFHFAGVAS-MNITQGVPRIKEIINGAKRISTPIIT---AE 963
+G I AQSIGEPGTQ+T++TFH GVAS +ITQG+PR++EI +IT E
Sbjct: 919 VGTIAAQSIGEPGTQLTMRTFHTGGVASNSDITQGLPRVQEIFEARNPKGEAVITEVKGE 978
Query: 964 LECNDNENAARV----VKGRI-EKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLC 1018
+ + + + R VKG+ E + +K+ + ++A AL +IQ L
Sbjct: 979 VIAIEEDASTRTKKVFVKGKTGEGEYVVPFTARMKVEVGDQVARGA-ALTEGSIQPKRLL 1037
Query: 1019 INADIVK---------ESIVQTPKIKLKQQHIKVLD---FRKLEIFPPVDKSKIHFELYS 1066
D++ + + ++ +++ +HI+V+ RK+ + P D + L
Sbjct: 1038 EVRDVLAVETYLLSEVQKVYRSQGVEIGDKHIEVMVRQMLRKVRVMDPGDTDLLMGTLMD 1097
Query: 1067 LKNVL----PMVIVKGIKTVERVVI 1087
+ + +VI GI R V+
Sbjct: 1098 ITDFTDANAEVVIAGGIPATARPVL 1122
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 47/180 (26%)
Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
R+ VE G Q GA +G + + EV+ L +E ++ E+ + ++ G+ I
Sbjct: 1011 RMKVE-VGDQVARGAALTEGS-IQPKRLLEVRDVLAVET---YLLSEVQKVYRSQGVEIG 1065
Query: 1167 KRHM--------------------MLLADLM--------------------TFRGEVLGI 1186
+H+ +L+ LM T R ++GI
Sbjct: 1066 DKHIEVMVRQMLRKVRVMDPGDTDLLMGTLMDITDFTDANAEVVIAGGIPATARPVLMGI 1125
Query: 1187 TRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIR 1246
T+ ++ S L ASF++T L +A++ G+ D + G+ E +I+G +P GTG+ + R
Sbjct: 1126 TKASLET--NSFLSAASFQETTRVLTDAAIRGKRDNLLGLKENVIIGKIIPAGTGMARYR 1183
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium
falciparum (isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 271 bits (693), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 150/379 (39%), Positives = 231/379 (60%), Gaps = 8/379 (2%)
Query: 92 LFLFKRMTDTDCEVL-YLSER--PEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLK 148
L + K++ + +L + S+R P LI+T I +PP RP V G+Q +E+D+T +L
Sbjct: 242 LEILKKIRKEEMSILGFNSDRCVPASLILTCIPIPPPCARPYVQY-GNQRSEDDLTLKLL 300
Query: 149 RIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPF-SMQVARPLSGFVQ 207
I++TN L+++ + LQ + ++D+ G+P + + +P+
Sbjct: 301 DIVKTNIQLKRQTDRGAKSHVLQDLCSLLQFHITTLFDNDIPGMPIATTRSKKPIKAIRT 360
Query: 208 RLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEK 267
RLKGK+GR RGNL GKRV+++ RTVI+ DPNL I + +P +A LT+ E V+ N +
Sbjct: 361 RLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDYIGVPKSVAMTLTFCETVTPLNYDN 420
Query: 268 LRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNR 327
L++ ++ GP ++PGA+ I +GT L RN EL+ G V+RH+ D D +LFNR
Sbjct: 421 LKKLVERGPYEWPGAKYIIRDNGTKYDLRHVRRNS-EKELEYGYKVERHMTDEDYILFNR 479
Query: 328 QPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMG 387
QPSLH+MSIM H+A+I+P+ T R N SV +PYNADFDGDEMN+H+ Q+ E R+E LM
Sbjct: 480 QPSLHKMSIMGHKAKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSHETRSEIKHLMI 539
Query: 388 VQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPA 447
VQ + +P+ + ++ QD L + TR+D F + + ++ + V +PTPA
Sbjct: 540 VQRQIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLTKEEVMSLLIWIP-YWNHV-IPTPA 597
Query: 448 ILKPVELWTGKQLFSVLIR 466
I+KP LWTGKQ+FS+L++
Sbjct: 598 IIKPRALWTGKQIFSMLLQ 616
Score = 217 bits (552), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 119/274 (43%), Positives = 178/274 (64%), Gaps = 1/274 (0%)
Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
NDG V +N+EL+SG + K T+G+ + L VL + G T ++ L K++ W+
Sbjct: 761 NDGKVIIKNNELLSGIICKRTVGSSSG-SLIHVLWHEMGPDKTKDFLSALQKVTNNWLEY 819
Query: 565 HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
GF++ D+ ++ K +++ ++ + +++ +G+L+ +PG ++ E +
Sbjct: 820 VGFTVSCSDIIASNKVLGKVREILDKSKSEVSKLVEKAQKGELECQPGKSLYESFETRVN 879
Query: 625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
+ LN RE AGK SL RN+ M GSKGS INISQ+++CVGQQ+V G+R P GF
Sbjct: 880 NELNCAREMAGKVASESLDERNNIFSMVASGSKGSIINISQIISCVGQQNVEGKRIPFGF 939
Query: 685 IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
RSLPHF + P ++GFV+NS+ SGL+ E FFH MGGREG++DTA KT++TGY+ R
Sbjct: 940 NHRSLPHFIKFDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYIQR 999
Query: 745 RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGM 778
RLIKA+ED+ +QYD +VRN+ G I+QFLYG+DGM
Sbjct: 1000 RLIKAMEDVMVQYDRTVRNSYGDIIQFLYGEDGM 1033
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 6/170 (3%)
Query: 875 THKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 934
THK ++ K L+ +Q + G +GA+ AQSIGEP TQMTL TFHFAGV
Sbjct: 1375 THK---VSVKGLDWLLQEIEKIFYKSLCHPGECVGALAAQSIGEPATQMTLNTFHFAGVG 1431
Query: 935 SMNITQGVPRIKEIINGAKRISTPIITAELE--CNDNENAARVVKGRIEKTLLGQVAKSI 992
S N+T GVPR+KE+IN K + TP T L+ ++++ A+ + ++E T L Q+
Sbjct: 1432 SKNVTLGVPRLKELINIVKNVKTPSTTIYLDDMVSNDQQKAKDILTKLEYTTLKQLTSHA 1491
Query: 993 KIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQ-TPKIKLKQQHI 1041
+I+ + ++ D + + + + D + S+ + +I+L H+
Sbjct: 1492 QIIYDPNTTTTILEEDKSWVNEFYEFPDEDDTQYSLGEWVLRIQLTNIHV 1541
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 100/182 (54%), Gaps = 4/182 (2%)
Query: 1067 LKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGE---KKKYRLLVEGTGLQAVMGAEG 1123
++ L + ++GI+ + +V + E+ K +NG+ + L +G L+ + A
Sbjct: 1873 MEQCLSTLKLRGIENITKVYMREESKITYD-SDNGKFVRSSHWVLDTDGCNLENIFCAPQ 1931
Query: 1124 IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1183
+D KT SN I E+ + LGIEA R ++ E+ + ++ RH+ +L D+MT +G +
Sbjct: 1932 VDFKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSILCDVMTQKGYL 1991
Query: 1184 LGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGIL 1243
+ ITR GI ++DK L+ SFE+T + L A+ + D + G++E I++G +GTG
Sbjct: 1992 MSITRHGINRVDKGPLIKCSFEETVEILLEAAAFAQVDNLRGITENIMLGQLCKIGTGSF 2051
Query: 1244 KI 1245
I
Sbjct: 2052 DI 2053
>sp|A8AZI2|RPOC_STRGC DNA-directed RNA polymerase subunit beta' OS=Streptococcus gordonii
(strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rpoC
PE=3 SV=1
Length = 1215
Score = 268 bits (686), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 265/1015 (26%), Positives = 442/1015 (43%), Gaps = 219/1015 (21%)
Query: 111 RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
+PE +++ + V P +RP V +DG + +D+ + +R+I N L + L+E N+
Sbjct: 223 KPEWMVLNILPVIPPDLRPMVQLDGGRFAASDLNDLYRRVINRNNRLAR-LLELNAPGII 281
Query: 171 LAGWE-TLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
+ + LQ V I++ RG P + +RPL LKGKQGRFR NL GKRV+++G
Sbjct: 282 VQNEKRMLQEAVDALIDNGRRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSG 341
Query: 230 RTVISPDPNLKITEVAIPIRMARILTYP-------ERVSDHNIEKLRQCIQNGPDKYPGA 282
R+VI+ P LK+ + +P MA L P R N++ ++ ++ G ++
Sbjct: 342 RSVIAVGPTLKMYQCGVPREMAIELFKPFVMREIVARDIVQNVKAAKRLVERGDER---- 397
Query: 283 RMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRAR 342
++ ++ H VL NR P+LHR+ I
Sbjct: 398 ------------IWDILEE----------VIKEH-----PVLLNRAPTLHRLGIQAFEPV 430
Query: 343 IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILV 402
++ + LR + VC YNADFDGD+M +HVP +EEA+ EA +LM ++ PK+G+ +V
Sbjct: 431 LIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHILNPKDGKPVV 490
Query: 403 ASTQDFLTSSFLITRKDTF----------YDRAAFSLMCCYMGDGMDRVDLPTPAILKPV 452
+QD + ++ +T ++ D A +L Y+ RV + T ++ KP
Sbjct: 491 TPSQDMVLGNYYLTMEEAGREGEGMVFKDMDEAVMALRNGYV-HLHTRVGITTDSLAKP- 548
Query: 453 ELWT------------GKQLFSVLI---RPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
WT GK LF+ ++ P+ NLT E + + D +
Sbjct: 549 --WTESQKHKILMTTVGKILFNAIMPEELPYLQEPTNANLT--EGVPDKYFLESGKDIKE 604
Query: 498 RIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKL 557
I+ + N F K LGN + + + + + TS ++RL L
Sbjct: 605 AIQALELNVPF-------------KKKNLGN-----IIAEIFKRFRTTETSALLDRLKNL 646
Query: 558 SARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQ 617
G ++GI D+ + + K ++I E+++ K++ G + +A
Sbjct: 647 GYHHSTLAGLTVGIADIP----VVEDKAEIIEESHKRVEQITKQFRRGMITDDERYNA-- 700
Query: 618 TLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 677
+T RE K + + +N ++M G++G+ N SQ+ G +
Sbjct: 701 -----VTAEWRAAREKLEKRLVANQDPKNPIVMMMDSGARGNISNFSQLAGMRGLMA--- 752
Query: 678 RRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTA 737
APNG I LP + ++F GLS E FF T G R+G+ DTA+KTA
Sbjct: 753 --APNGRI-MELP--------------ILSNFREGLSVLEMFFSTHGARKGMTDTALKTA 795
Query: 738 DTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLL 797
D+GY++RRL+ +D+ I+ D+ + G I G + + EPL
Sbjct: 796 DSGYLTRRLVDVAQDVIIREDDCGTDRGLLITSITDGKEMI----------EPLE----- 840
Query: 798 MKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIK 857
E+ + Y K+S K E + + +
Sbjct: 841 ------------------------ERLVGRYTKKSI---------KHPETGEVLVPADVL 867
Query: 858 FVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKR------------VEAG 905
ED+ Q++ +G+TE + + TC +R+ V R VE G
Sbjct: 868 VTEDMA----RQVV------NAGVTEVTIRSVL-TCNTRHGVCRHCYGINLATGDAVEVG 916
Query: 906 TAIGAIGAQSIGEPGTQMTLKTFHFAGVA-SMNITQGVPRIKEIINGAKRISTPIIT--- 961
A+G I AQSIGEPGTQ+T++TFH GVA S +ITQG+PR++EI +IT
Sbjct: 917 EAVGTIAAQSIGEPGTQLTMRTFHTGGVASSSDITQGLPRVQEIFEARNPKGEAVITEVK 976
Query: 962 AELECNDNENAARVVKGRIEKTLLGQVAKSIKIV-MTSRLASIV-------IALDMETIQ 1013
E+ + + + R K ++ GQ + +V T+R+ V AL +IQ
Sbjct: 977 GEVTAIEEDASTRTKKVFVK----GQTGEGEYVVPFTARMKVEVGDQVSRGAALTEGSIQ 1032
Query: 1014 DAHLCINADIVK---------ESIVQTPKIKLKQQHIKVLD---FRKLEIFPPVD 1056
HL D++ + + ++ +++ +HI+V+ RK+ + P D
Sbjct: 1033 PKHLLAVRDVLSVETYLLAEVQKVYRSQGVEIGDKHIEVMVRQMIRKVRVMDPGD 1087
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 47/180 (26%)
Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
R+ VE G Q GA +G + H+ V+ L +E ++ E+ + ++ G+ I
Sbjct: 1011 RMKVE-VGDQVSRGAALTEGS-IQPKHLLAVRDVLSVET---YLLAEVQKVYRSQGVEIG 1065
Query: 1167 KRHM--------------------MLLADLM--------------------TFRGEVLGI 1186
+H+ +L+ LM T R ++GI
Sbjct: 1066 DKHIEVMVRQMIRKVRVMDPGDTDLLMGTLMDITDFTDANRDVVISGGVPATARPVLMGI 1125
Query: 1187 TRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIR 1246
T+ ++ S L ASF++T L +A++ G+ D + G+ E +I+G +P GTG+ + R
Sbjct: 1126 TKASLET--NSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYR 1183
>sp|A3CKD4|RPOC_STRSV DNA-directed RNA polymerase subunit beta' OS=Streptococcus sanguinis
(strain SK36) GN=rpoC PE=3 SV=1
Length = 1215
Score = 268 bits (684), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 271/1008 (26%), Positives = 442/1008 (43%), Gaps = 205/1008 (20%)
Query: 111 RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
+PE +++ + V P +RP V +DG + +D+ + +R+I N L + L+E N+
Sbjct: 223 KPEWMVLNILPVIPPDLRPMVQLDGGRFAASDLNDLYRRVINRNNRLAR-LLELNAPGII 281
Query: 171 LAGWE-TLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
+ + LQ V I++ RG P + +RPL LKGKQGRFR NL GKRV+++G
Sbjct: 282 VQNEKRMLQEAVDALIDNGRRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSG 341
Query: 230 RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
R+VI+ P LK+ + +P MA L P +R+ + AR I
Sbjct: 342 RSVIAVGPTLKMYQCGVPREMAIELFKPF--------VMREIV---------ARDIVQNV 384
Query: 290 GTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 349
A+ L + ++ L+ ++ H VL NR P+LHR+ I ++ + L
Sbjct: 385 KAAKRLVERGDERIWDILEE--VIKEH-----PVLLNRAPTLHRLGIQAFEPVLIDGKAL 437
Query: 350 RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFL 409
R + VC YNADFDGD+M +HVP +EEA+ EA +LM ++ PK+G+ +V +QD +
Sbjct: 438 RLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHILNPKDGKPVVTPSQDMV 497
Query: 410 TSSFLITRKDTF----------YDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWT--- 456
++ +T ++ D A +L Y+ RV + T ++ KP WT
Sbjct: 498 LGNYYLTMEEAGREGEGMIFKDMDEAVMALRNGYV-HLHTRVGIATDSLNKP---WTEDQ 553
Query: 457 ---------GKQLFSVLI---RPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 504
GK LF+ ++ P+ NLT E + + + D + IE +
Sbjct: 554 KHKILITTVGKILFNAIMPEELPYLQEPTNANLT--EGVPAKYFLESGQDIKEVIEQLEI 611
Query: 505 NDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGN 564
N F K LGN + + + + + TS ++RL L
Sbjct: 612 NVPF-------------KKKNLGN-----IIAEIFKRFRTTETSALLDRLKNLGYHHSTL 653
Query: 565 HGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVIT 624
G ++GI D+ + + K ++I E+++ K++ G + +A +T
Sbjct: 654 AGLTVGIADIP----VVEDKAEIIEESHKRVEQITKQFRRGMITDDERYNA-------VT 702
Query: 625 DILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGF 684
RE K + + +N ++M G++G+ N SQ+ G + APNG
Sbjct: 703 AEWRAAREKLEKRLVANQDPKNPIVMMMDSGARGNISNFSQLAGMRGLMA-----APNGR 757
Query: 685 IDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 744
I LP + ++F GLS E FF T G R+G+ DTA+KTAD+GY++R
Sbjct: 758 I-MELP--------------ILSNFREGLSVLEMFFSTHGARKGMTDTALKTADSGYLTR 802
Query: 745 RLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATC 804
RL+ +D+ I+ D+ + G I G + ++ E LN VK
Sbjct: 803 RLVDVAQDVIIREDDCGTDRGLLITSITEGKEMIESLE------ERLNGRYTKKTVKH-- 854
Query: 805 PPAGQRYLSPQQVSEIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGW 864
P G + P ++ ED
Sbjct: 855 PETGAVIIGPNEL----------------------------------------ITEDKAR 874
Query: 865 DDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKR------------VEAGTAIGAIG 912
+ + +EEVT ++ VF TC +R+ V R VE G A+G I
Sbjct: 875 EIVNAGVEEVTIRS---------VF--TCNTRHGVCRHCYGINLATGDAVEVGEAVGTIA 923
Query: 913 AQSIGEPGTQMTLKTFHFAGVAS-MNITQGVPRIKEIINGAKRISTPIIT---AELECND 968
AQSIGEPGTQ+T++TFH GVAS +ITQG+PR++EI +IT E+ +
Sbjct: 924 AQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRVQEIFEARNPKGEAVITEVKGEVTAIE 983
Query: 969 NENAARVVKGRIEKTLLGQVAKSIKIV-MTSRLASIV-------IALDMETIQDAHLCIN 1020
+ + R K ++ GQ + +V T+R+ V AL +IQ HL
Sbjct: 984 EDASTRTKKVFVK----GQTGEGEYVVPFTARMKVEVGDQVSRGAALTEGSIQPKHLLAV 1039
Query: 1021 ADIVK---------ESIVQTPKIKLKQQHIKVLD---FRKLEIFPPVD 1056
D++ + + ++ +++ +HI+V+ RK+ + P D
Sbjct: 1040 RDVLSVETYLLAEVQKVYRSQGVEIGDKHIEVMVRQMIRKVRVMDPGD 1087
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 47/180 (26%)
Query: 1107 RLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSID 1166
R+ VE G Q GA +G + H+ V+ L +E ++ E+ + ++ G+ I
Sbjct: 1011 RMKVE-VGDQVSRGAALTEGS-IQPKHLLAVRDVLSVET---YLLAEVQKVYRSQGVEIG 1065
Query: 1167 KRHM--------------------MLLADLM--------------------TFRGEVLGI 1186
+H+ +L+ LM T R ++GI
Sbjct: 1066 DKHIEVMVRQMIRKVRVMDPGDTDLLMGTLMDITDFTDANRDVVISGGVPATARPVLMGI 1125
Query: 1187 TRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIR 1246
T+ ++ S L ASF++T L +A++ G+ D + G+ E +I+G +P GTG+ + R
Sbjct: 1126 TKASLET--NSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYR 1183
>sp|P42486|RPB1_ASFB7 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-99 PE=3 SV=1
Length = 1450
Score = 267 bits (683), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 231/775 (29%), Positives = 353/775 (45%), Gaps = 70/775 (9%)
Query: 51 IIHDRSKVTESLQEFASAITHTKESKAAVNVATYI---------LNPVNVLFLFKRMTDT 101
+I S TE Q + H K K + + T+ L P + +F R+T
Sbjct: 121 LIEAASSQTEGKQCYVCKAVHPKIVKDSEDYFTFWVDQQGKIDKLYPQIIREIFSRVTYD 180
Query: 102 DCEVLYLSE--RPEKLIITNIAVPPIAIRPSV---IMDGSQSNENDITERLKRIIQTNAS 156
L S+ PEKL++ I +PPI+IRP + I G QS +DI ++ +++ N
Sbjct: 181 TVVKLGRSKNSHPEKLVLKAIQIPPISIRPGIRLGIGSGPQSF-HDINNVIQYLVRKNLL 239
Query: 157 LQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-----------MQVARPLSGF 205
+ ++L L LQ Y N + V + + ARP
Sbjct: 240 IPKDLQIVRGQKIPLNIDRNLQTIQQLYYNFLLDSVSTTATQGGTGKRGIVMGARPAPSI 299
Query: 206 VQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNI 265
++RL K+GR R +L G +V R+ I + +L + EV PI AR L E V +NI
Sbjct: 300 MRRLPRKEGRIRKSLLGSQVWSISRSTICGNSDLHLDEVGYPISFARTLQVAETVQHYNI 359
Query: 266 EKLRQCIQNGPDKYPGARMIRYPDGTARV-----LYGKFRNQLAVELKSGCIVDRHLEDG 320
+L NG +YPG + Y T V L FR L+ G I+ R + G
Sbjct: 360 NRLMPYFLNGKRQYPGCSRV-YKQITQSVHDIEGLKQDFR------LEVGDILYRDVVTG 412
Query: 321 DVVLFNRQPSLHRMSIMCHRARIMP---WRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
DV FNRQPSL R SI HR ++ T + N S C YNADFDGD+MN+ VP +
Sbjct: 413 DVAFFNRQPSLERSSIGVHRIVVLENPKISTFQMNVSACAWYNADFDGDQMNLWVPWSVM 472
Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
+R EA LL V+N + K+ + QD SFL+TR +T + + +
Sbjct: 473 SRVEAELLCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTNTPMGKNVMNKLHAMGLFQ 532
Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
+ D P A P +L GK + S+L++ + +N YS E+
Sbjct: 533 TTQTDPPCFANYSPTDLLDGKSVVSMLLK-----QTPINYQRAPTWYS----------EV 577
Query: 498 RIETMCPN--DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
M N D RN ELI G L K +G G+ G+Y ++ R YG +
Sbjct: 578 YAPYMHYNKQDISTQIRNGELIEGVLDKKAVGAGSSGGIYHLISRRYGPQQALKMIFATQ 637
Query: 556 KLSARWIGNHGFSIGIDDV----QPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
+L+ ++ N GF++ D+ + +E+ + KL+ E+ E+ N + G +
Sbjct: 638 QLALNYVRNAGFTVSTADMLLTPEAHQEVQEIINKLLLESEEINNRLL----HGDIMPPI 693
Query: 612 GCDAAQTLEAVITDILNRIREDAGKACMGSL-PWRNSPLIMSQCGSKGSPINISQMVACV 670
G E + + L + + K M S+ P N M G+KGS N+ ++A +
Sbjct: 694 GLTTHDFYEKLQLNAL-KFPDRILKPIMNSINPETNGLFQMVATGAKGSNPNMIHIMAGI 752
Query: 671 GQQSVGGRR-APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
GQ + +R P R+L ++PR A E A GF+ NS+ +GL++ EF F M GR L
Sbjct: 753 GQIEINTQRIQPQFSFGRTLVYYPRFALEAQAYGFICNSYIAGLTSPEFIFGEMNGRFDL 812
Query: 730 VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
++ A+ T+ TGY +R+ I L+ + Y V + +VQ LYG+DG+D +E
Sbjct: 813 INKALSTSSTGYANRKAIFGLQSCIVDYYRRV-SIDTRLVQQLYGEDGLDARQLE 866
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
Y + GT + M + ID S+ I + + GIEAAR II EI M G
Sbjct: 1291 YAIKTNGTNIFGAMLDDNIDPYTIVSSSIGDTMELYGIEAARQKIISEIRTVMGDKGP-- 1348
Query: 1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKS-VLMLASFEKTADHLFNASVNGRDDRIE 1224
+ RH+++ ADLMT G+V + + G+ + S VL+ + L +A+V+ + I
Sbjct: 1349 NHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAVDSAVNPIY 1408
Query: 1225 GVSECIIMGIPMPLGT 1240
G++ +MG +GT
Sbjct: 1409 GIAAPTLMGSVPRIGT 1424
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 871 LEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHF 930
+E T KT IT +Q+ + +Y + G A+G + AQS+ EP TQ L + H
Sbjct: 1004 IELATVKTLNITCEQMSAILDLIRLQYTQSLINYGEAVGILAAQSVSEPLTQYMLDSHHR 1063
Query: 931 AGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIE--KTLLGQV 988
+ N G+ R +EI S + AE +E R+ +E KT ++
Sbjct: 1064 SVAGGTN-KSGIVRPQEI------FSAKPVEAE---QSSEMLLRLKNPEVETNKTYAQEI 1113
Query: 989 AKSIKIVMTSRL 1000
A SI+++ RL
Sbjct: 1114 ANSIELITFERL 1125
>sp|P0C987|RPB1_ASFP4 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Tick/South
Africa/Pretoriuskop Pr4/1996) GN=Pret-111 PE=3 SV=1
Length = 1450
Score = 267 bits (682), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 231/775 (29%), Positives = 353/775 (45%), Gaps = 70/775 (9%)
Query: 51 IIHDRSKVTESLQEFASAITHTKESKAAVNVATYI---------LNPVNVLFLFKRMTDT 101
+I S TE Q + H K K + + T+ L P + +F R+T
Sbjct: 121 LIEAASSQTEGKQCYVCKTVHPKIIKDSEDYFTFWVDQQGKIDKLYPQIIREIFSRVTYD 180
Query: 102 DCEVLYLSE--RPEKLIITNIAVPPIAIRPSV---IMDGSQSNENDITERLKRIIQTNAS 156
L S+ PEKL++ I +PPI+IRP + I G QS +DI ++ +++ N
Sbjct: 181 TVVKLGRSKNSHPEKLVLKAIQIPPISIRPGIRLGIGSGPQSF-HDINNVIQYLVRKNLL 239
Query: 157 LQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFS-----------MQVARPLSGF 205
+ ++L L LQ Y N + V + + ARP
Sbjct: 240 IPKDLQIVRGQKIPLNIDRNLQTIQQLYYNFLLDSVSTTATQGGTGKRGIVMGARPAPSI 299
Query: 206 VQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNI 265
++RL K+GR R +L G +V R+ I + +L + EV PI AR L E V +NI
Sbjct: 300 MRRLPRKEGRIRKSLLGSQVWSISRSTICGNSDLHLDEVGYPISFARTLQVAETVQHYNI 359
Query: 266 EKLRQCIQNGPDKYPGARMIRYPDGTARV-----LYGKFRNQLAVELKSGCIVDRHLEDG 320
+L NG +YPG + Y T V L FR L+ G I+ R + G
Sbjct: 360 NRLMPYFLNGKRQYPGCSRV-YKQITQSVHDIEGLKQDFR------LEVGDILYRDVVTG 412
Query: 321 DVVLFNRQPSLHRMSIMCHRARIMP---WRTLRFNESVCNPYNADFDGDEMNMHVPQTEE 377
DV FNRQPSL R SI HR ++ T + N S C YNADFDGD+MN+ VP +
Sbjct: 413 DVAFFNRQPSLERSSIGVHRIVVLENPKISTFQMNVSACAWYNADFDGDQMNLWVPWSVM 472
Query: 378 ARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDG 437
+R EA LL V+N + K+ + QD SFL+TR +T + + +
Sbjct: 473 SRVEAELLCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTNTPMGKNVMNKLHAMGLFQ 532
Query: 438 MDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEI 497
+ D P A P +L GK + S+L+R + +N YS E+
Sbjct: 533 TTQTDPPCFANYSPTDLLDGKSVVSMLLR-----QTPINYQRAPTWYS----------EV 577
Query: 498 RIETMCPN--DGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLA 555
M N D RN ELI G L K +G G+ G+Y ++ R YG +
Sbjct: 578 YAPYMHYNKQDISTQIRNGELIEGVLDKKAVGAGSSGGIYHLISRRYGPQQALKMIFATQ 637
Query: 556 KLSARWIGNHGFSIGIDDV----QPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKP 611
+L+ ++ N GF++ D+ + +E+ + +L+ E+ E+ N + G +
Sbjct: 638 QLALNYVRNAGFTVSTADMLLTPEAHQEVQEIINELLLESEEINNRLL----HGDIMPPI 693
Query: 612 GCDAAQTLEAVITDILNRIREDAGKACMGSL-PWRNSPLIMSQCGSKGSPINISQMVACV 670
G E + + L + + K M S+ P N M G+KGS N+ ++A +
Sbjct: 694 GLTTHDFYEKLQLNAL-KFPDRILKPIMNSINPETNGLFQMVATGAKGSNPNMIHIMAGI 752
Query: 671 GQQSVGGRR-APNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGL 729
GQ + +R P R+L ++PR A E A GF+ NS+ +GL++ EF F M GR L
Sbjct: 753 GQIEINTQRIQPQFSFGRTLVYYPRFALEAQAYGFICNSYIAGLTSPEFIFGEMNGRFDL 812
Query: 730 VDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANME 784
++ A+ T+ TGY +R+ I L+ + Y V + +VQ LYG+DG+D +E
Sbjct: 813 INKALSTSSTGYANRKAIFGLQSCIVDYYRRV-SIDTRLVQQLYGEDGLDARQLE 866
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 1106 YRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSI 1165
Y + GT + M + ID S+ I + + GIEAAR II EI M G
Sbjct: 1291 YAIKTNGTNIFGAMLDDNIDPYTIVSSSIGDTMELYGIEAARQKIISEIRTVMGDKGP-- 1348
Query: 1166 DKRHMMLLADLMTFRGEVLGITRFGIQKMDKS-VLMLASFEKTADHLFNASVNGRDDRIE 1224
+ RH+++ ADLMT G+V + + G+ + S VL+ + L +A+V+ + I
Sbjct: 1349 NHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAVDSAVNPIY 1408
Query: 1225 GVSECIIMGIPMPLGT 1240
G++ +MG +GT
Sbjct: 1409 GIAAPTLMGSVPRIGT 1424
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 871 LEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHF 930
+E T KT IT +Q+ + +Y + G A+G + AQS+ EP TQ L + H
Sbjct: 1004 IELATVKTLNITCEQMSAILDLIRLQYTQSLINYGEAVGILAAQSVSEPLTQYMLDSHHR 1063
Query: 931 AGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIE--KTLLGQV 988
+ N G+ R +EI + + AE +E R+ +E KT ++
Sbjct: 1064 SVAGGTN-KSGIVRPQEIFSAKP------VEAE---QSSEMLLRLKNPEVETNKTYAQEI 1113
Query: 989 AKSIKIVMTSRL 1000
A SI+++ RL
Sbjct: 1114 ANSIELITFERL 1125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,464,803
Number of Sequences: 539616
Number of extensions: 19597794
Number of successful extensions: 58108
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 51227
Number of HSP's gapped (non-prelim): 5186
length of query: 1265
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1136
effective length of database: 121,958,995
effective search space: 138545418320
effective search space used: 138545418320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)