RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 000829
(1265 letters)
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 806 bits (2083), Expect = 0.0
Identities = 430/1351 (31%), Positives = 654/1351 (48%), Gaps = 148/1351 (10%)
Query: 2 RNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTES 61
R + L KT ++ ++ V CG ++K V
Sbjct: 133 RFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRK--------DGLKLVGSW 184
Query: 62 LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSE---RPEKLIIT 118
++ A+ E + +L+ +L +FK ++ D L +E RPE +I+T
Sbjct: 185 KKDRATGDADEPELR--------VLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILT 236
Query: 119 NIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQ 178
+ VPP +RPS+ + SQ E+D+T +L I++ N SL+ LQ
Sbjct: 237 CLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQ 296
Query: 179 VEVAQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDP 237
VA Y+++D+ G P ++Q RP+ RLKGK+GR RGNL GKRV+++ RTVIS DP
Sbjct: 297 FHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDP 356
Query: 238 NLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYG 297
NL++ +V +P +A+ LTYPE V+ +NI++L Q ++NGP+++PGA+ + G L
Sbjct: 357 NLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRY 416
Query: 298 KFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCN 357
R ++L+ G V+RH+ D D VLFNRQPSLH+MS+M HR +++P+ T R N SV +
Sbjct: 417 SKRAG-DIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTS 475
Query: 358 PYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITR 417
PYNADFDGDEMN+HVPQ+EE R E L V + +P++ + + QD L +T
Sbjct: 476 PYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTL 535
Query: 418 KDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNL 477
+DTF + M ++ D +PTPAI+KP LW+GKQ+ SV I +++
Sbjct: 536 RDTFIELDQVLNMLYWVPDW--DGVIPTPAIIKPKPLWSGKQILSVAI----PNGIHLQR 589
Query: 478 TVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV 537
+ T + P D + + ++I G + K T+G+ N GL V
Sbjct: 590 FDEGTTL-----------------LSPKDNGMLIIDGQIIFGVVEKKTVGSSNG-GLIHV 631
Query: 538 LLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNV 597
+ R+ G + + K+ W+ ++GFS GI D + + I+E +
Sbjct: 632 VTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLD 691
Query: 598 KIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSK 657
KE L K G ++ E + LN R+ AG+ +L N+ M GSK
Sbjct: 692 VTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSK 751
Query: 658 GSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATE 717
GS INI+QM ACVGQQSV G+R GF+DR+LPHF + P +KGFV NS+ GL+ E
Sbjct: 752 GSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQE 811
Query: 718 FFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDG 777
FFFH MGGREGL+DTAVKTA+TGY+ RRL+KALED+ + YDN+ RN+ G ++QF+YG+DG
Sbjct: 812 FFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDG 871
Query: 778 MDPANMEGKSGEPL-NFDRLLMKVKATCPPAGQRYLSP---QQVSEIVE----------- 822
MD A++E +S + + D K L P + SEI+
Sbjct: 872 MDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEE 931
Query: 823 -KQLAAYGKESCS---------------EAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDD 866
KQL K + + ++ F K +G D
Sbjct: 932 YKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKD 991
Query: 867 KSQILEEVTHKTSGITEKQLE---VFIQTCFSRYRVKRV--------------------- 902
+ L + K I Q + +F SR +RV
Sbjct: 992 LQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQ 1051
Query: 903 ------EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRIS 956
G +G + AQSIGEP TQMTL TFHFAGVAS +T GVPR+KEI+N AK +
Sbjct: 1052 FLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMK 1111
Query: 957 TPIITAELE--CNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQD 1014
TP +T LE ++ A++++ IE T L V + +I S VI D E IQ
Sbjct: 1112 TPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQL 1171
Query: 1015 AHLCINADIVKESIVQTPKI--------KLKQQHIKVLDF-------------------- 1046
++ + + Q+P + + + + +
Sbjct: 1172 HFSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDN 1231
Query: 1047 -----------RKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKE-K 1094
R + + + H +L + ++G++ +ERVV+ + +++
Sbjct: 1232 DEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVP 1291
Query: 1095 RKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEI 1154
E ++ ++ L +G L VM GID + +N ++ + LGIEA R + E+
Sbjct: 1292 SPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEV 1351
Query: 1155 NETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA 1214
+ + G ++ RHM LL D+MT +G + +TR G + + LM SFE+T + LF A
Sbjct: 1352 YNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEA 1411
Query: 1215 SVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1245
+ D GVSE +I+G P+GTG +
Sbjct: 1412 GASAELDDCRGVSENVILGQMAPIGTGAFDV 1442
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 687 bits (1773), Expect = 0.0
Identities = 254/1152 (22%), Positives = 437/1152 (37%), Gaps = 189/1152 (16%)
Query: 111 RPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKS 170
RPE +I+ + V P +RP V +DG + +D+ + +R+I N L++ L +
Sbjct: 507 RPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIII 566
Query: 171 LAGWETLQVEVAQYINSDVRGVPFSMQ-VARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 229
LQ V +++ RG P + RPL L GKQGRFR NL GKRV+Y+G
Sbjct: 567 RNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSG 626
Query: 230 RTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPD 289
R+VI P LK+ + +P RMA L P + + + P+ RM+
Sbjct: 627 RSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKGIA------PNVKAARRMLERQR 680
Query: 290 GTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 349
++ + G VVL NR P+LHR+ I + ++ +++
Sbjct: 681 DIKDEVW---------------DALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSI 725
Query: 350 RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFL 409
+ + VC +NADFDGD+M +HVP + A+ EA + M +NL +P +GE L ++D +
Sbjct: 726 QLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDII 785
Query: 410 TSSFLITRKDTFYDRAAF---SLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIR 466
+ IT+ A + V L P + E G+ +
Sbjct: 786 LGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANP 845
Query: 467 PHANMRVYVNLT-VKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKAT 525
A + V + +++ + + RI V QL
Sbjct: 846 DEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQ 905
Query: 526 LGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKG 585
N KD L G T+ ++ L + G +IGIDD + ++K
Sbjct: 906 EKNSLKD-LVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDA----VIPEEKK 960
Query: 586 KLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLP-- 643
+ + E + Y G L + D I + E +A +
Sbjct: 961 QYLEEADRKLLQIEQAYEMGFLTDRERYDQ-------ILQLWTETTEKVTQAVFKNFEEN 1013
Query: 644 -WRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 702
N +M+Q G++G+P I Q+ G + P+G
Sbjct: 1014 YPFNPLYVMAQSGARGNPQQIRQLCGLRGLM-----QKPSGETFE--------------- 1053
Query: 703 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 762
V +SF GL+ E+F + G R+G DTA++TAD+GY++R+L+ ++ ++ +
Sbjct: 1054 VPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGT 1113
Query: 763 NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 822
+ F + + E + R+L +
Sbjct: 1114 TNYISVPLFQPDEVTRSLRLRKRADIEAGLYGRVLAR----------------------- 1150
Query: 823 KQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGIT 882
E L + D + IK E + S +T
Sbjct: 1151 ----------EVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVP--------VRSPLT 1192
Query: 883 EKQLEVFIQTCF--SRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA-SMNIT 939
+ Q C+ + V G A+G + AQSIGEPGTQ+T++TFH GVA + +IT
Sbjct: 1193 CQTRYGVCQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADIT 1252
Query: 940 QGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSR 999
QG+PR+ E+ + + +I+ + + R+ + + ++
Sbjct: 1253 QGLPRVIELFEARRPKAKAVIS------EIDGVVRIEETEEKLSVF-------------- 1292
Query: 1000 LASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSK 1059
+ E + K+ K+ + V D +E P+ +
Sbjct: 1293 -----------------------VESEGFSKEYKLP-KEARLLVKDGDYVEAGQPLTRGA 1328
Query: 1060 IHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKV-KENGEKK--KYRLLVEGTGLQ 1116
I +L KG + VER ++ +E +KV + G K K+ +V ++
Sbjct: 1329 I-----DPHQLLE---AKGPEAVERYLV----EEIQKVYRAQGVKLHDKHIEIVVRQMMK 1376
Query: 1117 AVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADL 1176
V + D + + E +EA +I E
Sbjct: 1377 YVEVTDPGD-SRLLEGQVLEK---WDVEALNERLIAEG-------------------KTP 1413
Query: 1177 MTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPM 1236
+ ++ ++G+T+ + KS L ASF+ T L A++ G+ D + G+ E +I+G +
Sbjct: 1414 VAWKPLLMGVTKSALST--KSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLI 1471
Query: 1237 PLGTGILKIRQR 1248
P GTG +R
Sbjct: 1472 PAGTGSDFVRFT 1483
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 56
Score = 27.4 bits (61), Expect = 1.3
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 1 MRNPKMEAL-RKTDLMKSIVKKC-STMASKAVKCPRCGYINGMVKKA 45
+ +P + ++ +K + +KC + +A KC RC N +KK
Sbjct: 3 LTDPAKLQIVQQRVFLKKVCRKCGALNPIRATKCRRCHSTNLRLKKK 49
>d1tlta2 d.81.1.5 (A:128-267) Virulence factor MviM {Escherichia
coli [TaxId: 562]}
Length = 140
Score = 27.9 bits (62), Expect = 4.5
Identities = 10/97 (10%), Positives = 28/97 (28%), Gaps = 9/97 (9%)
Query: 838 LNSLRKFFEGQQDKLDKKIKFVE-------DIGWDDKSQILEEVTHKTSGITEKQLEVFI 890
+++ G+ + + + + + H+ +G + ++
Sbjct: 44 VDTALWLSGGKASLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAGSQRETVQA-- 101
Query: 891 QTCFSRYRVKRVEAGTAIGAIGAQSIGEPGTQMTLKT 927
T + + + G PG Q TL+
Sbjct: 102 VTDGALIDITDMREWREERGQGVVHKPIPGWQSTLEQ 138
>d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional
pleiotropic repressor CodY, C-terminal domain {Bacillus
subtilis [TaxId: 1423]}
Length = 91
Score = 26.7 bits (59), Expect = 6.4
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 710 YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLI 747
YS L A E F + G EGL+ A K AD ++R +I
Sbjct: 15 YSELEAIEHIFEELDGNEGLL-VASKIADRVGITRSVI 51
>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET
{Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 28.2 bits (62), Expect = 7.4
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 235 PDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI 285
P P++ ++ + + R L PE D E + +C + P +
Sbjct: 234 PYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSEL 284
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 27.2 bits (59), Expect = 9.3
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 940 QGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEK 982
+GVP + +NG +++ + + A VK EK
Sbjct: 148 RGVPAM--FVNGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEK 188
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.391
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,609,424
Number of extensions: 222417
Number of successful extensions: 607
Number of sequences better than 10.0: 1
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 16
Length of query: 1265
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1169
Effective length of database: 1,089,516
Effective search space: 1273644204
Effective search space used: 1273644204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)