Query 000830
Match_columns 1265
No_of_seqs 392 out of 4512
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 16:51:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000830.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_600-604//hhsearch_pdb/000830hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 1802.6 131.4 1227 31-1260 50-1320(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 1555.5 117.8 1220 37-1260 29-1274(1284)
3 4f4c_A Multidrug resistance pr 1.0 1 1 858.4 72.3 576 679-1257 57-654 (1321)
4 3g5u_A MCG1178, multidrug resi 1.0 1 1 783.6 58.1 574 681-1257 32-626 (1284)
5 3qf4_B Uncharacterized ABC tra 1.0 1 1 739.9 66.1 574 681-1261 22-595 (598)
6 3qf4_A ABC transporter, ATP-bi 1.0 1 1 738.1 69.7 569 686-1260 13-582 (587)
7 4a82_A Cystic fibrosis transme 1.0 1 1 728.0 66.2 568 685-1256 3-576 (578)
8 2yl4_A ATP-binding cassette SU 1.0 1 1 715.4 74.6 572 685-1258 8-585 (595)
9 3b5x_A Lipid A export ATP-bind 1.0 1 1 712.0 76.9 567 684-1257 13-580 (582)
10 3b60_A Lipid A export ATP-bind 1.0 1 1 711.5 72.2 567 684-1257 13-580 (582)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=1802.60 Aligned_cols=1227 Identities=36% Similarity=0.585 Sum_probs=1056.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------CCC
Q ss_conf 1298731213769999981204569899999999999796678999999999999830027----------------840
Q 000830 31 SSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYL----------------FPK 94 (1265)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----------------~~~ 94 (1265)
.+.+++..++++++++|+|+.++++.+++++++++++.|+..|++.+++|.+++.+..... ...
T Consensus 50 ~~~~~~~~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (1321)
T 4f4c_A 50 RDAKEEVVNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKT 129 (1321)
T ss_dssp CC---CCSSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHH
T ss_pred HHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 22320256877999973156767899999999999999999999999999999999701000145430003443100168
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 23447899999999999999999999999999999999999999999999809901130366841799999935999999
Q 000830 95 TASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQD 174 (1265)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~l~~D~~~i~~ 174 (1265)
.+.+.+..+++++++++++.+++.|++.+++.+.++|+..++|.++|++++++|++|||+ .++|++++|+++|++.+++
T Consensus 130 ~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~-~~~G~l~sr~~~D~~~i~~ 208 (1321)
T 4f4c_A 130 DFEHDVMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT-NHSGTLATKLFDNLERVKE 208 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH-TCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-CCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999999999999997889899879-9848999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999899999999999999999999999999999999999999999999999419999
Q 000830 175 ALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTV 254 (1265)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~I 254 (1265)
++.+.++.++..+..++++++++++++|++++++++++|++.++..++.+...+...+.++..++.++.++|+++||++|
T Consensus 209 ~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~i 288 (1321)
T 4f4c_A 209 GTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTV 288 (1321)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999899999999999999999999999999999999999999999999999839999
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 98452699999999999999999999999999878999999999999999999999983155556799999999999999
Q 000830 255 QAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLS 334 (1265)
Q Consensus 255 k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1265)
|+|++|+.+.++|.+..++..+...+.....+...+...++.++.+++++|+|.+++..+.+++|.+++++.+......|
T Consensus 289 k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~ 368 (1321)
T 4f4c_A 289 VSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMA 368 (1321)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98214299999999999999999999999999999999999999999999999999995998699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEE
Q ss_conf 99659999999999999999999733364564455567777887652899957998799999754122359952997999
Q 000830 335 LGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVA 414 (1265)
Q Consensus 335 l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ 414 (1265)
+..+.+.+..+.++.++++|++++++.+++.+........+.+..+.|+|+||+|+||++++.++|+|+||++++|++++
T Consensus 369 l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~va 448 (1321)
T 4f4c_A 369 LGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVA 448 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEECEEEEECCCCEEE
T ss_conf 99899999999999999999999971785345666556567788876799985540799998743333188622882789
Q ss_pred EECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 98399994899999997135798536998994179999688854106884677654023899860499999999999999
Q 000830 415 LVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAA 494 (1265)
Q Consensus 415 ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~~~~ 494 (1265)
||||||||||||+++|+|+|+|.+|+|.+||+|+++++.+++|++|+||+|+||||++||+|||+||+++.+++++++||
T Consensus 449 ivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~ 528 (1321)
T 4f4c_A 449 LVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAAC 528 (1321)
T ss_dssp EEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf 98058985778888754565164486157996501125999850466658753320786167886415522099999999
Q ss_pred HHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99128999961965421100399998996799999999986139988898276789998989999999998708975999
Q 000830 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVV 574 (1265)
Q Consensus 495 ~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ 574 (1265)
+.+++++||+.||+||+|.|||+|.+||||||||||||||+|++|+|||||||||+||+++|+.+++++.++.++||+|+
T Consensus 529 ~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~ii 608 (1321)
T 4f4c_A 529 KMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTII 608 (1321)
T ss_dssp HHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEE
T ss_pred HHCCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 87565468870888886075589887777787999999987259998998455446887899999999999847988999
Q ss_pred ECCCCHHHHCCCEEEEEECCEEEEEECCCHHCCCCCHHHHHHHHHHHHHHHCCCCCC-----CCCCCCCC--CCCCCCCC
Q ss_conf 836913543049899995988998607301105995589999999998521158888-----99999987--63322234
Q 000830 575 VAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQ-----CPNMGRPL--SIKFSREL 647 (1265)
Q Consensus 575 itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~ 647 (1265)
||||+++++.||+|++|++|+|+++|+|+||+++ ++.|.+++..|...+..+.... .....+.. ......+.
T Consensus 609 iaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1321)
T 4f4c_A 609 IAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQA 687 (1321)
T ss_dssp ECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCC----------------------
T ss_pred ECCCHHHHHHCCEEEEEECCEEECCCCHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7363878986898999639965136899999985-327999999622122223323344332232111222223422222
Q ss_pred CCCCCC---CCCC---CCCCHHHHCCCCCC----------CCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf 687766---6667---54311211016988----------8888421025589999986200357999999999999878
Q 000830 648 SGTRTS---FGAS---FRSEKESVLSHGAA----------DATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQ 711 (1265)
Q Consensus 648 ~~~~~~---~~~~---~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1265)
...... .... .....+........ ...+.........++++.+.+++|.++.++.++..+.+..
T Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 767 (1321)
T 4f4c_A 688 SEMDDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFI 767 (1321)
T ss_dssp ----------------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGH
T ss_pred CCCCCHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22110221110132124567740257775315403899999999707863109999999877899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 88999999999998642851235638999999999999999999999999999999999999999999998299322123
Q 000830 712 MPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDE 791 (1265)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~ff~~ 791 (1265)
.|.+...+..++..+..+..........|.+++++++++..++.+++.+++.+.+.++..++|.++|++++++|++|||.
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~ 847 (1321)
T 4f4c_A 768 YPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDS 847 (1321)
T ss_dssp HHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTS
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 99999999999987517934556678999999999999999999999999999999999999999988873499333216
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45664689999983299999999998999999999999999999999799999999999999999999999998664689
Q 000830 792 MDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNL 871 (1265)
Q Consensus 792 ~~~~~g~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~ 871 (1265)
.++++|++++|+++|++.++..++..+..++..+..+++.++++++++|.+++++++.+|++++..+...+.......+.
T Consensus 848 ~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1321)
T 4f4c_A 848 PQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKS 927 (1321)
T ss_dssp GGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTT
T ss_pred CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78884888850250599999999999999999865377770221378689999999988899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999832499998232999999999999759999999999999999999999999999999999999752
Q 000830 872 SKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGK 951 (1265)
Q Consensus 872 ~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 951 (1265)
.+...+......|++.|+++||+|++|+.+.++|.+..+...+...+......+.......+.....++++|+|..++..
T Consensus 928 ~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ 1007 (1321)
T 4f4c_A 928 ASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIIT 1007 (1321)
T ss_dssp SSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99988898899999962798886141488999999999999999999999999999999999999999999875788753
Q ss_pred HCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCEEEEEEEEECC
Q ss_conf 1055999--999999999999999999989999999999999999985245445577-7865678766189996889899
Q 000830 952 ELASFKS--VMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGD-IGEELTNVEGTIELRGVHFSYP 1028 (1265)
Q Consensus 952 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~-~~~~~~~~~g~I~f~~Vsf~Y~ 1028 (1265)
+..+.+. .+..+.++.....+++.+....+++.....+.+|++++++.+++.+.. .+.+.++..|.|+|+||+|+||
T Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~ 1087 (1321)
T 4f4c_A 1008 DPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYP 1087 (1321)
T ss_dssp SSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC
T ss_conf 76542147899999999877889999999999999999999989998607665777667787888888189998798579
Q ss_pred CCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCCCCCC
Q ss_conf 99984321010599848959999849999857899998336879973799989506899978772432898147888823
Q 000830 1029 SRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFAT 1108 (1265)
Q Consensus 1029 ~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQd~~LF~g 1108 (1265)
++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+||+++++++||+++++|||||+||+|
T Consensus 1088 ~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g 1167 (1321)
T 4f4c_A 1088 ERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC 1167 (1321)
T ss_dssp TSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE
T ss_pred CCCCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEECC
T ss_conf 99988212451699889899999899998199999999568638997899999986549999998545998789973272
Q ss_pred CHHHHHCCCC--CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 3889960399--99998899999999413888981878766412698898993599999999986149988887267689
Q 000830 1109 SIYENILYGK--DGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSA 1186 (1265)
Q Consensus 1109 TIreNl~~g~--~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl~~p~ILiLDEaTSa 1186 (1265)
||||||.+|. ++++|+++++||+.++++++|++||+||||.|||+|.+||||||||||||||++|+|+|||||||||+
T Consensus 1168 TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSa 1247 (1321)
T 4f4c_A 1168 SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSA 1247 (1321)
T ss_dssp EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred CHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 39999745499999999999999998298499971767899982388915699999999999999717998999681115
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 99898999999999980896599992491144202879999498898933934562028807999999861118
Q 000830 1187 LDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQRQD 1260 (1265)
Q Consensus 1187 LD~~te~~i~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~ive~Gt~~eLl~~~~g~y~~l~~~~~~~~ 1260 (1265)
||++||+.||++|++.+++||+|+||||++|+++||+|+|||+|+|+|+|+|+||++ .+|.|++||+.|..++
T Consensus 1248 LD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~-~~g~y~~L~~~Q~~e~ 1320 (1321)
T 4f4c_A 1248 LDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS-EKGAYYKLTQKQMTEK 1320 (1321)
T ss_dssp TTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHH-CC--------------
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCCHHHHHHHHHHHCC
T ss_conf 789999999999999739998999606899999699999998989999888899984-9809999999998505
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=1555.49 Aligned_cols=1220 Identities=38% Similarity=0.673 Sum_probs=1041.0
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CC---------CHHHHHHH
Q ss_conf 1213769999981204569899999999999796678999999999999830027------84---------02344789
Q 000830 37 QKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYL------FP---------KTASHKVA 101 (1265)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~------~~---------~~~~~~~~ 101 (1265)
++...++.++++|..++++.+++++++++++.++..|+++++++.+++.+..... .. ......+.
T Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (1284)
T 3g5u_A 29 KKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMT 108 (1284)
T ss_dssp ----CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 66665699999872657999999999999999999999999999999998613444332222221111100244688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999998099011303668417999999359999999999999
Q 000830 102 KYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVG 181 (1265)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~l~~D~~~i~~~~~~~~~ 181 (1265)
.+.+++++++++.+++.+++.+++.+.+.+...++|.++|++++++|++|||+ .++|++++|+++|++.+++.+...+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~-~~~G~l~sr~~~D~~~i~~~~~~~~~ 187 (1284)
T 3g5u_A 109 TYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV-HDVGELNTRLTDDVSKINEGIGDKIG 187 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS-CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999998699899756-88778999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 99999999999999999998999999999999999999999999999999999999999999999994199999845269
Q 000830 182 NFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGED 261 (1265)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~Ik~~~~e~ 261 (1265)
.++..+..+++.++++++++|.+++++++.+|++.++..++.+...+...+.++..++.++.+.|+++|+++||+|++|+
T Consensus 188 ~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~ 267 (1284)
T 3g5u_A 188 MFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQK 267 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHH
T ss_conf 99999999999999999998999999999999999999999999999999999999999999999997879999846539
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999998789999999999999999999999831555567999999999999999965999
Q 000830 262 KAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPD 341 (1265)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 341 (1265)
.+.++|.+..++..+...+.....+...+...++.+..+++++|+|.+++..+.++.|.+++.++.......++..+...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~ 347 (1284)
T 3g5u_A 268 KELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPN 347 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999929988999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCC
Q ss_conf 99999999999999997333645644555677778876528999579987999997541223599529979999839999
Q 000830 342 ITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGS 421 (1265)
Q Consensus 342 ~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGs 421 (1265)
+..+.++..++.|++++++.+++.+.....+..+++..+.|+++|++|+|+++++.++|+|+||++++||+++|||||||
T Consensus 348 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGs 427 (1284)
T 3g5u_A 348 IEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGC 427 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEECCEEEECCCCEEEEECCCCC
T ss_conf 99999999999999999728986776665677777777718999989976999987101254589759988999899999
Q ss_pred CHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHH
Q ss_conf 48999999971357985369989941799996888541068846776540238998604999999999999999912899
Q 000830 422 GKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501 (1265)
Q Consensus 422 GKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~ 501 (1265)
|||||+++|+|+|+|++|+|.+||.|+++++++++|++|+||+|+|++|++||+|||.+|.++.+++++.++|+.+++++
T Consensus 428 GKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~ 507 (1284)
T 3g5u_A 428 GKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYD 507 (1284)
T ss_dssp SHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHH
T ss_conf 79999999807889997389999998775799999865489868875377669999745798999999999999829699
Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf 99619654211003999989967999999999861399888982767899989899999999987089759998369135
Q 000830 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLST 581 (1265)
Q Consensus 502 ~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 581 (1265)
++..+|+|++|.+||+|.+||||||||++||||++++|+|||||||||+||+++++.+++.++...+|+|+|+||||+++
T Consensus 508 ~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 587 (1284)
T 3g5u_A 508 FIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLST 587 (1284)
T ss_dssp HHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 99746563345014787865999999999999995299989997987777999999999999997399989999407789
Q ss_pred HHCCCEEEEEECCEEEEEECCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCC--CCCC--CCCCCCCC
Q ss_conf 4304989999598899860730110599558999999999852115888899999987-63322--2346--87766666
Q 000830 582 IRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPL-SIKFS--RELS--GTRTSFGA 656 (1265)
Q Consensus 582 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~--~~~~~~~~ 656 (1265)
+..||+|++|++|+++++|+|+++++. ++.|..++..+................... ..... .... ........
T Consensus 588 i~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1284)
T 3g5u_A 588 VRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRK 666 (1284)
T ss_dssp HTTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC----------------------------------------
T ss_pred HHCCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 974998999989999997889999867-8779999997430022111333333222223443333333320003454333
Q ss_pred CCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHH
Q ss_conf 75431121101698888884210255899999862003579999999999998788899999999999864285--1235
Q 000830 657 SFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDW--DTTQ 734 (1265)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 734 (1265)
............. ..............++++.+.+++|+++..+.++.++.+...|.++..+...+..+.... ....
T Consensus 667 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 745 (1284)
T 3g5u_A 667 SICGPHDQDRKLS-TKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQR 745 (1284)
T ss_dssp ------------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHH
T ss_pred CCCCCCCCCCCCC-HHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 4456422332110-245553136625899999984515799999999999999999999999999999985568503367
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 63899999999999999999999999999999999999999999999829932212345664689999983299999999
Q 000830 735 REVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIV 814 (1265)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~ff~~~~~~~g~i~~r~~~D~~~i~~~~ 814 (1265)
.....+..++++++++..++.+++.+++.+.+.+...++|.+++++++++|++|||.+.+++|++++|+++|+..++..+
T Consensus 746 ~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~ 825 (1284)
T 3g5u_A 746 QNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGAT 825 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999999999999999999999999999999999839988875789988999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99899999999999999999999979999999999999999999999999866468999999999999999832499998
Q 000830 815 VDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAA 894 (1265)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra 894 (1265)
...+..++..+..++..+++++.++|.+++++++.+|++++..+...++......+..+..........|+++|+++||+
T Consensus 826 ~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a 905 (1284)
T 3g5u_A 826 GSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVS 905 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999969999999999999999999999999999999999999999999999988999998
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 23299999999999975999999999999999999999999999999999999975210559999999999999999999
Q 000830 895 FCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMG 974 (1265)
Q Consensus 895 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1265)
|++++.+.++|.+..+...+...+.....+...++...+.++..++.+|+|.+++..+.++++.++..+.++.....++.
T Consensus 906 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~ 985 (1284)
T 3g5u_A 906 LTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVG 985 (1284)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 46599999999999999999999999999999999999999999999999999999098069999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEE
Q ss_conf 99989999999999999999985245445577--7865678766189996889899999843210105998489599998
Q 000830 975 ETLALVPDLLKGNQMAASVFEVLDRKTQVIGD--IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALV 1052 (1265)
Q Consensus 975 ~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~--~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIV 1052 (1265)
.+....+.+..+..+.+|+.++++.+++.... ....+++..|.|+|+||+|+|+++++.++|+|+||+|++||++|||
T Consensus 986 ~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~iv 1065 (1284)
T 3g5u_A 986 QVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALV 1065 (1284)
T ss_dssp HHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEECCEEEEECCCCEEEEE
T ss_conf 99999999999999999999998388766665556654567778579999899779999870020305997699889998
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCCCCCCCHHHHHCCCCC--CCCHHHHHHHH
Q ss_conf 4999985789999833687997379998950689997877243289814788882338899603999--99988999999
Q 000830 1053 GQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKD--GASEGEVIEAA 1130 (1265)
Q Consensus 1053 G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQd~~LF~gTIreNl~~g~~--~~~deei~~al 1130 (1265)
||||||||||+++|+|+|+|++|+|.+||+|+++++++++|++++||||||.+|++||+|||.++.+ ..+++++++++
T Consensus 1066 G~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~ 1145 (1284)
T 3g5u_A 1066 GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAA 1145 (1284)
T ss_dssp CSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 89999789999999468678997798999980007899997026898778740666699997466877899999999999
Q ss_pred HHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99413888981878766412698898993599999999986149988887267689998989999999999808965999
Q 000830 1131 KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTII 1210 (1265)
Q Consensus 1131 ~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~~~TvI~ 1210 (1265)
+.++++++++++|+||||.+||+|.+||||||||+|||||++++|+|||||||||+||+++++.|++.|++..+++|+|+
T Consensus 1146 ~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~ 1225 (1284)
T 3g5u_A 1146 KEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIV 1225 (1284)
T ss_dssp HHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEE
T ss_pred HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 98395999972704245611788893389999999999999749999998687555799999999999998679998999
Q ss_pred EECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 92491144202879999498898933934562028807999999861118
Q 000830 1211 VAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQRQD 1260 (1265)
Q Consensus 1211 IaHRl~ti~~~DrI~vl~~G~ive~Gt~~eLl~~~~g~y~~l~~~~~~~~ 1260 (1265)
||||++++..||||+||++|+++|.|+|+||++ .+|.|++|++.|....
T Consensus 1226 isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~-~~g~y~~l~~~q~~~~ 1274 (1284)
T 3g5u_A 1226 IAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA-QKGIYFSMVSVQAGAK 1274 (1284)
T ss_dssp ECSCTTGGGSCSEEEEEETBEEEEEECHHHHHH-SCSHHHHHHHHHC---
T ss_pred EECCHHHHHCCCEEEEEECCEEEEECCHHHHHH-CCCHHHHHHHHHHHCC
T ss_conf 955879998099899998998999778999984-7777999999976132
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=858.44 Aligned_cols=576 Identities=38% Similarity=0.599 Sum_probs=522.6
Q ss_pred HHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------C--C-----------CHHHHHHH
Q ss_conf 0255899999862003-5799999999999987888999999999998642------8--5-----------12356389
Q 000830 679 AKHVSAIKLYSMVRPD-WTYGVCGTICAIIAGAQMPLFALGVSQALVAYYM------D--W-----------DTTQREVK 738 (1265)
Q Consensus 679 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~-----------~~~~~~~~ 738 (1265)
.+++++++++++..+. +..+.++.+++++.++..|++..++++.+..+.. . . ........
T Consensus 57 ~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1321)
T 4f4c_A 57 VNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVM 136 (1321)
T ss_dssp SSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHH
T ss_pred CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 68779999731567678999999999999999999999999999999997010001454300034431001689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999998299322123456646899999832999999999989
Q 000830 739 KITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRS 818 (1265)
Q Consensus 739 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~ff~~~~~~~g~i~~r~~~D~~~i~~~~~~~~ 818 (1265)
.+.+.+++++++..++.+++.+++.+.+.+...++|.++|++++++|++|||+ +++|++++|+++|++.++..+...+
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~--~~~G~l~sr~~~D~~~i~~~~~~~l 214 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT--NHSGTLATKLFDNLERVKEGTGDKI 214 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH--TCCTTHHHHHHHHHHHHHHTSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999997889899879--9848999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 99999999999999999999799999999999999999999999998664689999999999999998324999982329
Q 000830 819 TILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSE 898 (1265)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e 898 (1265)
..++..+..++++++++++++|.+++++++.+|+.++......+..++...+.++...+..+.+.|.++|+++||+|++|
T Consensus 215 ~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 294 (1321)
T 4f4c_A 215 GMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGL 294 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999899999999999999999999999999999999999999999999999839999982142
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999759999999999999999999999999999999999999752105599999999999999999999998
Q 000830 899 DKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLA 978 (1265)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 978 (1265)
+.+.++|.+..++..+...+.....++..+...++....+++.+|+|.+++..+.++.+.+++++.+......++..+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~ 374 (1321)
T 4f4c_A 295 RYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGP 374 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999995998699999999999999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCC
Q ss_conf 99999999999999999852454455777--8656787661899968898999998432101059984895999984999
Q 000830 979 LVPDLLKGNQMAASVFEVLDRKTQVIGDI--GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSG 1056 (1265)
Q Consensus 979 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~~--~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SG 1056 (1265)
.+..+..+..+.+|+.++++.+++.+... .....+..|.|+|+||+|+||++++.++|+|+||+|++||++|||||||
T Consensus 375 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sG 454 (1321)
T 4f4c_A 375 QLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSG 454 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEECEEEEECCCCEEEEEECCC
T ss_conf 99999999999999999971785345666556567788876799985540799998743333188622882789980589
Q ss_pred CCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHH
Q ss_conf 98578999983368799737999895068999787724328981478888233889960399999988999999994138
Q 000830 1057 SGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAH 1136 (1265)
Q Consensus 1057 sGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQd~~LF~gTIreNl~~g~~~~~deei~~al~~~~l~ 1136 (1265)
||||||+++|+|+|+|++|+|.+||+|++++++++||++|+||||||+||+|||||||.+|.++++++++++||+.++++
T Consensus 455 sGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~ 534 (1321)
T 4f4c_A 455 CGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAE 534 (1321)
T ss_dssp SCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCCH
T ss_conf 85778888754565164486157996501125999850466658753320786167886415522099999999875654
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCH
Q ss_conf 88981878766412698898993599999999986149988887267689998989999999999808965999924911
Q 000830 1137 SFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLS 1216 (1265)
Q Consensus 1137 ~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~~~TvI~IaHRl~ 1216 (1265)
++|+.||+|+||.|||+|.+||||||||||||||++++|+|||||||||+||++||+.++++|++..++||+|+||||++
T Consensus 535 ~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls 614 (1321)
T 4f4c_A 535 KFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLS 614 (1321)
T ss_dssp HHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTT
T ss_pred HHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 68870888886075589887777787999999987259998998455446887899999999999847988999736387
Q ss_pred HHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHHH
Q ss_conf 44202879999498898933934562028807999999861
Q 000830 1217 TIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQ 1257 (1265)
Q Consensus 1217 ti~~~DrI~vl~~G~ive~Gt~~eLl~~~~g~y~~l~~~~~ 1257 (1265)
++++||+|+||++|+|+|+|+|+||++ .+|.|++|++.|.
T Consensus 615 ~i~~aD~Iivl~~G~ive~Gth~eL~~-~~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 615 TIRNADLIISCKNGQVVEVGDHRALMA-QQGLYYDLVTAQT 654 (1321)
T ss_dssp TTTTCSEEEEEETTEEEEEECHHHHHT-TTCHHHHHHHHHH
T ss_pred HHHHCCEEEEEECCEEECCCCHHHHHH-HHHHHHHHHHHHH
T ss_conf 898689899963996513689999998-5327999999622
No 4
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=783.57 Aligned_cols=574 Identities=39% Similarity=0.620 Sum_probs=511.6
Q ss_pred HHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------C---------HHHHHHHHHH
Q ss_conf 558999998620-03579999999999998788899999999999864285---------1---------2356389999
Q 000830 681 HVSAIKLYSMVR-PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDW---------D---------TTQREVKKIT 741 (1265)
Q Consensus 681 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---------~~~~~~~~~~ 741 (1265)
...+++++.+.. .+|.++..+.++.++.+...|+++..++..++.+.... . ........+.
T Consensus 32 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1284)
T 3g5u_A 32 AVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYA 111 (1284)
T ss_dssp -CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 65699999872657999999999999999999999999999999998613444332222221111100244688999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999998299322123456646899999832999999999989999
Q 000830 742 ILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTIL 821 (1265)
Q Consensus 742 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~ff~~~~~~~g~i~~r~~~D~~~i~~~~~~~~~~~ 821 (1265)
+.+++++++..++.+++.+++.+.+.+...++|.++|++++++|++|||+ +++|++++|+++|++.++..++..+..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~--~~~G~l~sr~~~D~~~i~~~~~~~~~~~ 189 (1284)
T 3g5u_A 112 YYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV--HDVGELNTRLTDDVSKINEGIGDKIGMF 189 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS--CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999998699899756--8877899999988999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999999999999799999999999999999999999998664689999999999999998324999982329999
Q 000830 822 IQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKV 901 (1265)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~ 901 (1265)
+..+..+++.++++++++|.+++++++.+|++++...+..+..++...+.++..++.+..+.|+++|+++||+|++|+.+
T Consensus 190 ~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~ 269 (1284)
T 3g5u_A 190 FQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKE 269 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHH
T ss_conf 99999999999999999899999999999999999999999999999999999999999999999787999984653999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999759999999999999999999999999999999999999752105599999999999999999999998999
Q 000830 902 LELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVP 981 (1265)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 981 (1265)
.++|.+..++..+...+.....+...++..++.+...++.+|+|..++..+.++.+.++.++.+......++..+...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1284)
T 3g5u_A 270 LERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE 349 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999992998899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCH
Q ss_conf 9999999999999985245445577--78656787661899968898999998432101059984895999984999985
Q 000830 982 DLLKGNQMAASVFEVLDRKTQVIGD--IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGK 1059 (1265)
Q Consensus 982 ~~~~~~~~~~ri~~~~~~~~~~~~~--~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGK 1059 (1265)
.+..+..+++|++++++.+++.... ....+++..|.|+|+||+|+|+++++.++|+|+||+|++||++||||||||||
T Consensus 350 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGK 429 (1284)
T 3g5u_A 350 AFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGK 429 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEECCEEEECCCCEEEEECCCCCCH
T ss_conf 99999999999999972898677666567777777771899998997699998710125458975998899989999979
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHH
Q ss_conf 78999983368799737999895068999787724328981478888233889960399999988999999994138889
Q 000830 1060 STVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFI 1139 (1265)
Q Consensus 1060 STL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQd~~LF~gTIreNl~~g~~~~~deei~~al~~~~l~~~i 1139 (1265)
|||+++|.|+|+|++|+|.+||.|+++++++++|+++++|||||++|++||+|||.+|.++.++++++++++.+++++++
T Consensus 430 STl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i 509 (1284)
T 3g5u_A 430 STTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFI 509 (1284)
T ss_dssp HHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHH
T ss_conf 99999980788999738999999877579999986548986887537766999974579899999999999982969999
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
Q ss_conf 81878766412698898993599999999986149988887267689998989999999999808965999924911442
Q 000830 1140 SALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIK 1219 (1265)
Q Consensus 1140 ~~Lp~Gldt~vge~G~~LSgGQrQrialARALl~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~~~TvI~IaHRl~ti~ 1219 (1265)
+.+|+|+||.+||+|.+||||||||+|||||++++|+|||||||||+||+++|+.+++.+++..+++|+|+||||++++.
T Consensus 510 ~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~ 589 (1284)
T 3g5u_A 510 MKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVR 589 (1284)
T ss_dssp HHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHT
T ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
T ss_conf 74656334501478786599999999999999529998999798777799999999999999739998999940778997
Q ss_pred CCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHHH
Q ss_conf 02879999498898933934562028807999999861
Q 000830 1220 NADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQ 1257 (1265)
Q Consensus 1220 ~~DrI~vl~~G~ive~Gt~~eLl~~~~g~y~~l~~~~~ 1257 (1265)
+||+|+||++|+++|.|+|+||++ .++.|++++..+.
T Consensus 590 ~~d~i~vl~~G~i~~~g~~~~l~~-~~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 590 NADVIAGFDGGVIVEQGNHDELMR-EKGIYFKLVMTQT 626 (1284)
T ss_dssp TCSEEEECSSSCCCCEECHHHHHH-TTSHHHHHHHHTC
T ss_pred CCCEEEEEECCEEEEECCHHHHHH-CCCHHHHHHHHHH
T ss_conf 499899998999999788999986-7877999999743
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=739.95 Aligned_cols=574 Identities=27% Similarity=0.427 Sum_probs=507.1
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55899999862003579999999999998788899999999999864285123563899999999999999999999999
Q 000830 681 HVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHL 760 (1265)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 760 (1265)
....++++.+.+++++.+..+.++.++.+.+.+..++.+...++...... .......+..+++++.++..++.+++.+
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPR--RFDLLPRYMLILGTIYALTSLLFWLQGK 99 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT--CGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999999999999999997368--8899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999982993221234566468999998329999999999899999999999999999999979
Q 000830 761 SFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNW 840 (1265)
Q Consensus 761 ~~~~~~~~~~~~lr~~~~~~il~~~~~ff~~~~~~~g~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (1265)
...+.+.+...++|.+++++++++|++||++ +++|++++|+++|++.++..+...+..++..+..+++++++++.++|
T Consensus 100 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 177 (598)
T 3qf4_B 100 IMLTLSQDVVFRLRKELFEKLQRVPVGFFDR--TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNV 177 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTHHHHH--SCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999997799999768--88899999999999999999999999999999999999999999989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999986646899999999999999983249999823299999999999975999999999
Q 000830 841 RITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRG 920 (1265)
Q Consensus 841 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~ 920 (1265)
.++++.++.+|+.+.......+..++...+.++...+..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 178 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 257 (598)
T 3qf4_B 178 ILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQ 257 (598)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999973799999748709999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999999999999999997521055999999999999999999999989999999999999999985245
Q 000830 921 QIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRK 1000 (1265)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~ 1000 (1265)
...........++.....++.+|+|.+++..+.++++.++.++.+......++..+...+..+..+..+.+|+.++++.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~ 337 (598)
T 3qf4_B 258 IFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLE 337 (598)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999999999999859978999999999999999999999999999999999999999997688
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 44557778656787661899968898999998432101059984895999984999985789999833687997379998
Q 000830 1001 TQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVD 1080 (1265)
Q Consensus 1001 ~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1080 (1265)
++.......+.++..|.|+++||+|+|++ +.++|+|+||++++||++|||||||||||||+++|.|+|+|++|+|.+|
T Consensus 338 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 415 (598)
T 3qf4_B 338 EEKDDPDAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVD 415 (598)
T ss_dssp CCCCCSSCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEET
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEECCC--CCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 77777777777777771899998997799--9860122279986998899989999969999999945857998089999
Q ss_pred CCCCCCCCHHHHHCCCEEEECCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 95068999787724328981478888233889960399999988999999994138889818787664126988989935
Q 000830 1081 GIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGG 1160 (1265)
Q Consensus 1081 G~di~~~~l~~lR~~i~~VpQd~~LF~gTIreNl~~g~~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgG 1160 (1265)
|+|+++++.+++|+++++|||+|.+|++|++||+.++.+..++++++++++.++++++++.+|+|+||.+|++|.+||||
T Consensus 416 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgG 495 (598)
T 3qf4_B 416 GIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQG 495 (598)
T ss_dssp TEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHH
T ss_pred CEEHHHCCHHHHHHCEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHH
T ss_conf 99830188999984108990798232463999974479999999999999996978889746453236422788987999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHH
Q ss_conf 99999999986149988887267689998989999999999808965999924911442028799994988989339345
Q 000830 1161 QKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSS 1240 (1265)
Q Consensus 1161 QrQrialARALl~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~ive~Gt~~e 1240 (1265)
||||+|||||++++|+||+||||||+||++++..+++.+++..+++|+|+||||++++..||+|++|++|+++|.|+|+|
T Consensus 496 q~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~ 575 (598)
T 3qf4_B 496 QRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDE 575 (598)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHH
T ss_conf 99999999999649999999897667999999999999999808998999942778997199899998999998778999
Q ss_pred HHHCCCCHHHHHHHHHHCCCC
Q ss_conf 620288079999998611189
Q 000830 1241 LVENEDGAYFKLINLQQRQDP 1261 (1265)
Q Consensus 1241 Ll~~~~g~y~~l~~~~~~~~~ 1261 (1265)
|++ .+|.|++++..|.....
T Consensus 576 l~~-~~~~~~~~~~~~~~~~~ 595 (598)
T 3qf4_B 576 LIQ-KRGFYYELFTSQYGLVV 595 (598)
T ss_dssp HHH-TTCHHHHHHHHHHGGGG
T ss_pred HHH-CCCHHHHHHHHHHHHHH
T ss_conf 986-78779999999764652
No 6
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=738.15 Aligned_cols=569 Identities=27% Similarity=0.390 Sum_probs=498.2
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99986200357999999999999878889999999999986428512356389999999999999999999999999999
Q 000830 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIM 765 (1265)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 765 (1265)
+++.+.+++|+.+..+.++.++...+.+..++.+...++...... .......+.++++++.++..++.++..++..+.
T Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (587)
T 3qf4_A 13 TLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARG--DFSLVLKTGILMLIVALIGAVGGIGCTVFASYA 90 (587)
T ss_dssp CGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999987369--879999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998299322123456646899999832999999999989999999999999999999997999999
Q 000830 766 GERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLV 845 (1265)
Q Consensus 766 ~~~~~~~lr~~~~~~il~~~~~ff~~~~~~~g~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv 845 (1265)
+.+...++|.++++++++.|+.||++ +++|++++|+++|++.++..+...+..++.....+++++++++.++|.++++
T Consensus 91 ~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~ 168 (587)
T 3qf4_A 91 SQNFGADLRRDLFRKVLSFSISNVNR--FHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSV 168 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999997889799765--8889999999999999999999999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998664689999999999999998324999982329999999999997599999999999999
Q 000830 846 VVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925 (1265)
Q Consensus 846 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1265)
+++.+|++++...+..+..++..++.++...+..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.......
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (587)
T 3qf4_A 169 LIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVF 248 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999998559999986214999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999999999999752105599999999999999999999998999999999999999998524544557
Q 000830 926 FYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIG 1005 (1265)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 1005 (1265)
..++..++.....++.+|+|.+++..+.++.+.++++..+......++..+...+..+..+..+.+|+.++++.+++...
T Consensus 249 ~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 328 (587)
T 3qf4_A 249 ALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEE 328 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999999999999999999984993899999999999999999999999999999999999999999768976578
Q ss_pred CC-CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 77-86567876618999688989999984321010599848959999849999857899998336879973799989506
Q 000830 1006 DI-GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDI 1084 (1265)
Q Consensus 1006 ~~-~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1084 (1265)
.. ....++..+.|+++||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+||+|+
T Consensus 329 ~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i 407 (587)
T 3qf4_A 329 ADNALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407 (587)
T ss_dssp CTTCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBG
T ss_pred CCCCCCCCCCCCCEEEEEEEEECCCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
T ss_conf 87765668888807997889984899-97642111799869988999899999799999999278669986798999983
Q ss_pred CCCCHHHHHCCCEEEECCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 89997877243289814788882338899603999999889999999941388898187876641269889899359999
Q 000830 1085 KRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQR 1164 (1265)
Q Consensus 1085 ~~~~l~~lR~~i~~VpQd~~LF~gTIreNl~~g~~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQr 1164 (1265)
++++.+++|++++||||+|.+|++|++||+.++.+..++++++++++.++++++++.+|+|+||.++++|.+||||||||
T Consensus 408 ~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQr 487 (587)
T 3qf4_A 408 RTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQR 487 (587)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHH
T ss_pred CCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCHHHHHCCCCCCCCHHHHHH
T ss_conf 40789999841389778986767559999852488999999999999968499997565312127518989929999999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 99999861499888872676899989899999999998089659999249114420287999949889893393456202
Q 000830 1165 VAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1165 ialARALl~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~ive~Gt~~eLl~~ 1244 (1265)
+|||||++++|+||+||||||+||+++++.+++.+++..+++|+|+||||++++..||+|++|++|+++|.|+|+||++
T Consensus 488 v~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~- 566 (587)
T 3qf4_A 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE- 566 (587)
T ss_dssp HHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHH-
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-
T ss_conf 9999999729999999797544799999999999998679998999822768898199899998998999788999986-
Q ss_pred CCCHHHHHHHHHHCCC
Q ss_conf 8807999999861118
Q 000830 1245 EDGAYFKLINLQQRQD 1260 (1265)
Q Consensus 1245 ~~g~y~~l~~~~~~~~ 1260 (1265)
.++.|++++..|....
T Consensus 567 ~~~~~~~~~~~~~~~~ 582 (587)
T 3qf4_A 567 HCKPYREIYESQFGNG 582 (587)
T ss_dssp HCHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHHCCC
T ss_conf 7839999999984656
No 7
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00 E-value=1 Score=728.03 Aligned_cols=568 Identities=31% Similarity=0.446 Sum_probs=413.1
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999986200357999999999999878889999999999986428512-35638----9999999999999999999999
Q 000830 685 IKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDT-TQREV----KKITILFCCAAVITVIVHAIEH 759 (1265)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~i~~~~~~ 759 (1265)
++++.+.+++++.+..+.++.++.....+..++.+...++........ ..... ..+..+++++.++..++.+++.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (578)
T 4a82_A 3 KRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQ 82 (578)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999988999999999999999999999999999999999981687114677888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998299322123456646899999832999999999989999999999999999999997
Q 000830 760 LSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILN 839 (1265)
Q Consensus 760 ~~~~~~~~~~~~~lr~~~~~~il~~~~~ff~~~~~~~g~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (1265)
+...+.+.+...++|.++++++++.|++||++ +++|++++|+++|++.++..+...+..++.....+++++++++.++
T Consensus 83 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (578)
T 4a82_A 83 YLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT--SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999998789999768--9869999999999999999999999999999999999999999996
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999998664689999999999999998324999982329999999999997599999999
Q 000830 840 WRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIR 919 (1265)
Q Consensus 840 ~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~ 919 (1265)
|.++++.++.+|+++.......+..++...+.++...+..+.+.|.++|+++||+|++|+.+.++|.+...+..+...+.
T Consensus 161 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (578)
T 4a82_A 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240 (578)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999998249999981664999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999999999999752105599999999999999999999998999999999999999998524
Q 000830 920 GQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDR 999 (1265)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~ 999 (1265)
.........+..++......+++|+|.+++..+.++.+.++.++.+......++..+...+..+..+..+.+|+.++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 320 (578)
T 4a82_A 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999999999999985995899999999999999999999999999999999999999999768
Q ss_pred CCCCCCCC-CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 54455777-86567876618999688989999984321010599848959999849999857899998336879973799
Q 000830 1000 KTQVIGDI-GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVM 1078 (1265)
Q Consensus 1000 ~~~~~~~~-~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~ 1078 (1265)
+++..... ..+.++..+.|+++||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 399 (578)
T 4a82_A 321 DYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399 (578)
T ss_dssp CCSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC-CCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf 97666787766667778807999999975899-97413433799879999999899998599999998467889996799
Q ss_pred ECCCCCCCCCHHHHHCCCEEEECCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 98950689997877243289814788882338899603999999889999999941388898187876641269889899
Q 000830 1079 VDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLS 1158 (1265)
Q Consensus 1079 idG~di~~~~l~~lR~~i~~VpQd~~LF~gTIreNl~~g~~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LS 1158 (1265)
+||.|+++++.+++|++++||||+|.+|++|++||+.+|.+..++++++++++.++++++++.+|+|+||.+|++|.+||
T Consensus 400 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LS 479 (578)
T 4a82_A 400 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479 (578)
T ss_dssp ETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSC
T ss_pred ECCEEHHHCCHHHHHHHEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCCCC
T ss_conf 99998442789999600689928983476459999852799988999999998809599997573301025306889679
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCH
Q ss_conf 35999999999861499888872676899989899999999998089659999249114420287999949889893393
Q 000830 1159 GGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTH 1238 (1265)
Q Consensus 1159 gGQrQrialARALl~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~ive~Gt~ 1238 (1265)
||||||++||||++++|++++||||||+||+++++.+++.+++..+++|+|+||||++++..||+|++|++|+++|.|+|
T Consensus 480 gGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~ 559 (578)
T 4a82_A 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTH 559 (578)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCH
T ss_conf 99999999999997499999997865457999999999999998089979998317899971998999989989998889
Q ss_pred HHHHHCCCCHHHHHHHHH
Q ss_conf 456202880799999986
Q 000830 1239 SSLVENEDGAYFKLINLQ 1256 (1265)
Q Consensus 1239 ~eLl~~~~g~y~~l~~~~ 1256 (1265)
+||++ .++.|+++++.|
T Consensus 560 ~el~~-~~~~~~~~~~~q 576 (578)
T 4a82_A 560 RELIA-KQGAYEHLYSIQ 576 (578)
T ss_dssp HHHHH-TTSHHHHHHTTT
T ss_pred HHHHH-CCCHHHHHHHHH
T ss_conf 99985-883899999850
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=1.00 E-value=1 Score=715.35 Aligned_cols=572 Identities=34% Similarity=0.509 Sum_probs=398.2
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998620035799999999999987888999999999998642851-23563899999999999999999999999999
Q 000830 685 IKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWD-TTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1265)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 763 (1265)
++++.+.+++++.+..+.++.++...+.+..++.+...++....... ........+...++++.++..++.+++.++..
T Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (595)
T 2yl4_A 8 RKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQ 87 (595)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999988789999999999999999999999999999999973574026679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999982993221234566468999998329999999999899999999999999999999979999
Q 000830 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1265)
Q Consensus 764 ~~~~~~~~~lr~~~~~~il~~~~~ff~~~~~~~g~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 843 (1265)
+.+.+...++|.++++++++.|++||++ +++|++++|+++|++.++..+...+..++..+..+++.++++++++|.++
T Consensus 88 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 165 (595)
T 2yl4_A 88 TSGQRIVNRLRTSLFSSILRQEVAFFDK--TRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLA 165 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHH--SCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999998199999777--98488999999999999999999999999999999999999999819999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999986646899999999999999983249999823299999999999975999999999999
Q 000830 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1265)
Q Consensus 844 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1265)
++.++.+|+.++......+..++..++.++...+..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.....
T Consensus 166 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (595)
T 2yl4_A 166 TFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFAR 245 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999981199999837569999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999999999999997521055999999999999999999999989999999999999999985245445
Q 000830 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1265)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 1003 (1265)
.+...+..++........+|+|.+++..|.++++.++.++.+......++..+......+..+..+.+|+.++++.+++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 325 (595)
T 2yl4_A 246 AGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKL 325 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999999999999999869978999999999999999999999999999999999999999998389766
Q ss_pred CCCCCCCC-CCCCCC-EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 57778656-787661-8999688989999984321010599848959999849999857899998336879973799989
Q 000830 1004 IGDIGEEL-TNVEGT-IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDG 1081 (1265)
Q Consensus 1004 ~~~~~~~~-~~~~g~-I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1081 (1265)
........ ++..+. |+++||+|+|+++++.++|+|+||++++||++|||||||||||||+++|.|+++|++|+|.+||
T Consensus 326 ~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 405 (595)
T 2yl4_A 326 PFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDG 405 (595)
T ss_dssp CSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETT
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 77778777767899838999889985899888120112799849988999899999799999998258578983799999
Q ss_pred CCCCCCCHHHHHCCCEEEECCCCCCCCCHHHHHCCCCCC---CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 506899978772432898147888823388996039999---99889999999941388898187876641269889899
Q 000830 1082 IDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDG---ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLS 1158 (1265)
Q Consensus 1082 ~di~~~~l~~lR~~i~~VpQd~~LF~gTIreNl~~g~~~---~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LS 1158 (1265)
+|+.+++.+.+|+++++|||+|.+|++|++||+.++.+. .++++++++++.++++++++.+|+|+||.+|++|.+||
T Consensus 406 ~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LS 485 (595)
T 2yl4_A 406 HDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLS 485 (595)
T ss_dssp EETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCC
T ss_pred EEHHHCCHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 98111799999732289836883268779999840587766568999999999869799997473201350168878689
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCH
Q ss_conf 35999999999861499888872676899989899999999998089659999249114420287999949889893393
Q 000830 1159 GGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTH 1238 (1265)
Q Consensus 1159 gGQrQrialARALl~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~ive~Gt~ 1238 (1265)
||||||++||||++++|+||+||||||+||+++++.+++.+++..+++|+|+||||++++..||+|++|++|+++|.|+|
T Consensus 486 gGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 565 (595)
T 2yl4_A 486 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKH 565 (595)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECS
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCH
T ss_conf 99999999999997599999998866689989999999999999659979999468789975998999989989997889
Q ss_pred HHHHHCCCCHHHHHHHHHHC
Q ss_conf 45620288079999998611
Q 000830 1239 SSLVENEDGAYFKLINLQQR 1258 (1265)
Q Consensus 1239 ~eLl~~~~g~y~~l~~~~~~ 1258 (1265)
+||+++.++.|+++++.|..
T Consensus 566 ~~l~~~~~~~~~~~~~~q~~ 585 (595)
T 2yl4_A 566 EELLSKPNGIYRKLMNKQSF 585 (595)
T ss_dssp CC------C-----------
T ss_pred HHHHHCCCHHHHHHHHHHHC
T ss_conf 99974787299999997430
No 9
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=1.00 E-value=1 Score=711.97 Aligned_cols=567 Identities=26% Similarity=0.409 Sum_probs=484.8
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999862003579999999999998788899999999999864285123563899999999999999999999999999
Q 000830 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1265)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 763 (1265)
.++++.+.+++++.+..+.++.++.+...+..++.+...++....... .........+++++.++..++.+++.++..
T Consensus 13 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (582)
T 3b5x_A 13 FKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE--SNFLRILPFMILGLMFVRGLSGFASSYCLS 90 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999988999999999999999999999999999999999864686--679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999982993221234566468999998329999999999899999999999999999999979999
Q 000830 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1265)
Q Consensus 764 ~~~~~~~~~lr~~~~~~il~~~~~ff~~~~~~~g~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 843 (1265)
+.+.+...++|.++++++++.|++||++ +++|++++|+++|++.++..+...+..++..+..++++++++++++|.++
T Consensus 91 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 168 (582)
T 3b5x_A 91 WVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLS 168 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999998699999778--98789999999889999999999999999999999999999999829999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999986646899999999999999983249999823299999999999975999999999999
Q 000830 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1265)
Q Consensus 844 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1265)
++.++.+|+.++......+..++...+.++...+..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.....
T Consensus 169 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T 3b5x_A 169 LVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQ 248 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999995199999708759999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999999999999997521055999999999999999999999989999999999999999985245445
Q 000830 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1265)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 1003 (1265)
.+...+..++......+++|+|.+++..|.++.+.++.++.+......++..+......+..+..+.+|+.++++.+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 328 (582)
T 3b5x_A 249 SIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETER 328 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999999999999999859988999999999999999999999999999999999999999997589767
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 57778656787661899968898999998432101059984895999984999985789999833687997379998950
Q 000830 1004 IGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGID 1083 (1265)
Q Consensus 1004 ~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~d 1083 (1265)
.. ...+.++..+.|+++||+|+|+++ +.++|+|+||++++||++|||||||||||||+++|.|+|+|++|+|.+||.|
T Consensus 329 ~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b5x_A 329 DN-GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406 (582)
T ss_pred CC-CCCCCCCCCCEEEEEEEEEECCCC-CCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
T ss_conf 77-777777788828999989972899-8654004169987999899989999979999999965778999879899998
Q ss_pred CCCCCHHHHHCCCEEEECCCCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 68999787724328981478888233889960399-99998899999999413888981878766412698898993599
Q 000830 1084 IKRLNLKSLRKHIALVQQEPALFATSIYENILYGK-DGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1084 i~~~~l~~lR~~i~~VpQd~~LF~gTIreNl~~g~-~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQr 1162 (1265)
+.+++.+++|++++||||+|.+|++|++||+.++. ++.++++++++++.++++++++.+|+|+||.++++|.+||||||
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~ 486 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486 (582)
T ss_pred HHHCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHCCCCCCCCHHHH
T ss_conf 56388999964858982799053102999985668899999999999998798999984765334510688884799999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999998614998888726768999898999999999980896599992491144202879999498898933934562
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1163 QrialARALl~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~ive~Gt~~eLl 1242 (1265)
||++||||++++|+||+||||||+||+++++.+++.+++..+++|+|+||||++++..||+|++|++|++++.|+|+||+
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999999974999999978544689999999999999972899899993688999819989999899899977899998
Q ss_pred HCCCCHHHHHHHHHH
Q ss_conf 028807999999861
Q 000830 1243 ENEDGAYFKLINLQQ 1257 (1265)
Q Consensus 1243 ~~~~g~y~~l~~~~~ 1257 (1265)
+ .++.|+++++.|.
T Consensus 567 ~-~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 567 A-QDGAYAQLHRIQF 580 (582)
T ss_pred H-CCCHHHHHHHHHH
T ss_conf 4-8858999999861
No 10
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=1.00 E-value=1 Score=711.50 Aligned_cols=567 Identities=28% Similarity=0.453 Sum_probs=486.7
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999862003579999999999998788899999999999864285123563899999999999999999999999999
Q 000830 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1265)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 763 (1265)
.++++.+.+++++.+..+.++.++.+...+..++.+...++..... .. ..........++++.++..++.+++.+...
T Consensus 13 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (582)
T 3b60_A 13 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGK-TD-RSVLLWMPLVVIGLMILRGITSYISSYCIS 90 (582)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTS-TT-HHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999988436-86-579999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999982993221234566468999998329999999999899999999999999999999979999
Q 000830 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1265)
Q Consensus 764 ~~~~~~~~~lr~~~~~~il~~~~~ff~~~~~~~g~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 843 (1265)
+.+.+...++|.++++++++.|++||++ +++|++++|+++|++.++..+...+..++..+..+++.+++++.++|.++
T Consensus 91 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 168 (582)
T 3b60_A 91 WVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS 168 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSTHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999998099999788--98658999999879999999999999999999999999999999809999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999986646899999999999999983249999823299999999999975999999999999
Q 000830 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1265)
Q Consensus 844 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1265)
++.++.+|+.+.......+..++...+.++...+..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.....
T Consensus 169 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T 3b60_A 169 IILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 248 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999996199999837689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999999999999997521055999999999999999999999989999999999999999985245445
Q 000830 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1265)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 1003 (1265)
.+...+..++......+++|+|.+++..|.++.+.++.++.+......++..+...+..+..+..+.+|+.++++.+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 328 (582)
T 3b60_A 249 SISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK 328 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999999999999999849998999999999999999999999999999999999999999997599876
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 57778656787661899968898999998432101059984895999984999985789999833687997379998950
Q 000830 1004 IGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGID 1083 (1265)
Q Consensus 1004 ~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~d 1083 (1265)
.. ...+.++..+.|+++||+|+|+++ +.++|+|+||++++||++|||||||||||||+++|.|+++|++|+|.+||.|
T Consensus 329 ~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b60_A 329 DE-GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 406 (582)
T ss_dssp CC-CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE
T ss_pred CC-CCCCCCCCCCCEEEEEEEEECCCC-CCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEE
T ss_conf 67-777777888847999889973999-9744156159976999899989999989999999861068989769799998
Q ss_pred CCCCCHHHHHCCCEEEECCCCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 68999787724328981478888233889960399-99998899999999413888981878766412698898993599
Q 000830 1084 IKRLNLKSLRKHIALVQQEPALFATSIYENILYGK-DGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1084 i~~~~l~~lR~~i~~VpQd~~LF~gTIreNl~~g~-~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQr 1162 (1265)
+++++.+++|++++||||+|.+|++|++||+.++. ++.++++++++++.++++++++.+|+|+||.++++|.+||||||
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~ 486 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR 486 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred CCCCCHHHHHHHCEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf 23069999996080880687477878999985459999899999999998497999984504114511479887899999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999998614998888726768999898999999999980896599992491144202879999498898933934562
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1163 QrialARALl~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~ive~Gt~~eLl 1242 (1265)
||++||||++++|+|++||||||+||+++++.+++.+++..+++|+|+||||++++..||+|++|++|++++.|+|+||+
T Consensus 487 qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b60_A 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566 (582)
T ss_dssp HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999999972899899978655579899999999999996799799994547789859989999788898845899998
Q ss_pred HCCCCHHHHHHHHHH
Q ss_conf 028807999999861
Q 000830 1243 ENEDGAYFKLINLQQ 1257 (1265)
Q Consensus 1243 ~~~~g~y~~l~~~~~ 1257 (1265)
+ .++.|+++++.|.
T Consensus 567 ~-~~~~~~~~~~~q~ 580 (582)
T 3b60_A 567 A-QHGVYAQLHKMQF 580 (582)
T ss_dssp H-HTSSHHHHHHHTC
T ss_pred H-CCCHHHHHHHHHC
T ss_conf 7-6988999999750
Done!