Query 000831
Match_columns 1264
No_of_seqs 264 out of 2138
Neff 6.0
Searched_HMMs 46136
Date Tue Apr 2 00:18:41 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02666 5-oxoprolinase 100.0 6E-289 1E-293 2725.6 135.6 1242 1-1263 2-1272(1275)
2 KOG1939 Oxoprolinase [Amino ac 100.0 2E-244 5E-249 2091.7 97.4 1233 8-1263 2-1244(1247)
3 COG0145 HyuA N-methylhydantoin 100.0 5E-136 1E-140 1248.9 48.8 662 7-720 1-673 (674)
4 COG0146 HyuB N-methylhydantoin 100.0 2E-133 4E-138 1174.7 55.2 504 734-1263 2-521 (563)
5 PF02538 Hydantoinase_B: Hydan 100.0 6E-128 1E-132 1167.2 56.4 506 734-1263 1-518 (527)
6 PF01968 Hydantoinase_A: Hydan 100.0 1.3E-65 2.8E-70 582.1 2.9 283 235-535 1-290 (290)
7 PF05378 Hydant_A_N: Hydantoin 100.0 1.4E-42 3E-47 366.5 17.0 176 10-216 1-176 (176)
8 TIGR03123 one_C_unchar_1 proba 100.0 6.8E-35 1.5E-39 330.9 18.4 243 204-513 38-304 (318)
9 PF13941 MutL: MutL protein 99.6 1.3E-14 2.9E-19 172.3 13.1 368 10-507 2-406 (457)
10 TIGR01319 glmL_fam conserved h 99.5 1.2E-13 2.6E-18 162.6 15.0 295 153-527 122-446 (463)
11 COG1548 Predicted transcriptio 97.5 0.0021 4.5E-08 71.0 14.7 230 251-527 78-324 (330)
12 TIGR02529 EutJ ethanolamine ut 96.6 0.011 2.4E-07 66.4 10.8 65 460-529 173-239 (239)
13 PRK15080 ethanolamine utilizat 95.9 0.083 1.8E-06 60.4 12.8 66 458-528 198-265 (267)
14 PF06406 StbA: StbA protein; 95.7 0.057 1.2E-06 63.2 10.7 40 488-527 275-316 (318)
15 PF01869 BcrAD_BadFG: BadF/Bad 95.3 0.01 2.2E-07 67.4 2.7 70 455-528 192-269 (271)
16 PRK13928 rod shape-determining 94.6 0.33 7.1E-06 57.2 12.8 76 452-529 239-320 (336)
17 COG2971 Predicted N-acetylgluc 94.0 0.1 2.3E-06 59.9 6.6 72 4-83 1-76 (301)
18 TIGR03739 PRTRC_D PRTRC system 93.8 0.34 7.3E-06 56.8 10.7 48 479-528 269-316 (320)
19 TIGR02350 prok_dnaK chaperone 93.1 0.65 1.4E-05 59.1 12.4 64 464-528 302-368 (595)
20 PRK13930 rod shape-determining 92.9 0.36 7.8E-06 56.6 9.0 76 452-529 244-325 (335)
21 PRK00047 glpK glycerol kinase; 92.7 0.098 2.1E-06 64.9 4.3 84 4-92 1-91 (498)
22 COG4820 EutJ Ethanolamine util 92.3 0.78 1.7E-05 49.7 9.6 67 460-531 205-273 (277)
23 TIGR03286 methan_mark_15 putat 91.9 0.34 7.4E-06 58.1 7.1 70 450-528 326-399 (404)
24 PRK10939 autoinducer-2 (AI-2) 91.1 0.25 5.4E-06 61.7 5.3 86 8-98 3-97 (520)
25 TIGR00241 CoA_E_activ CoA-subs 91.0 0.52 1.1E-05 53.2 7.2 70 451-528 176-247 (248)
26 TIGR03192 benz_CoA_bzdQ benzoy 91.0 0.49 1.1E-05 54.7 6.9 72 450-529 211-285 (293)
27 COG1924 Activator of 2-hydroxy 90.2 0.56 1.2E-05 55.3 6.6 72 450-529 313-387 (396)
28 PRK13410 molecular chaperone D 90.0 1.4 2.9E-05 57.0 10.5 63 465-528 307-372 (668)
29 TIGR01311 glycerol_kin glycero 90.0 0.27 5.9E-06 61.0 4.1 80 8-92 1-87 (493)
30 PTZ00009 heat shock 70 kDa pro 89.6 2.7 5.9E-05 54.2 12.8 62 467-528 313-377 (653)
31 PRK13318 pantothenate kinase; 89.3 1 2.2E-05 51.2 7.8 63 10-83 2-64 (258)
32 PF11104 PilM_2: Type IV pilus 89.2 5.5 0.00012 47.1 14.1 146 171-337 42-206 (340)
33 PF00370 FGGY_N: FGGY family o 89.2 0.32 6.9E-06 54.4 3.5 72 9-85 1-79 (245)
34 TIGR02261 benz_CoA_red_D benzo 88.9 0.95 2.1E-05 51.6 7.1 72 450-528 182-260 (262)
35 PTZ00400 DnaK-type molecular c 88.9 2.4 5.2E-05 54.7 11.6 63 466-529 347-412 (663)
36 COG1924 Activator of 2-hydroxy 88.8 1 2.2E-05 53.3 7.2 50 7-60 134-183 (396)
37 PRK00290 dnaK molecular chaper 88.7 3 6.5E-05 53.5 12.2 63 465-528 305-370 (627)
38 PRK13321 pantothenate kinase; 88.6 0.89 1.9E-05 51.7 6.6 64 9-83 1-64 (256)
39 TIGR01314 gntK_FGGY gluconate 88.4 0.43 9.3E-06 59.4 4.3 75 453-531 371-447 (505)
40 PRK10331 L-fuculokinase; Provi 88.3 0.53 1.1E-05 58.1 5.0 82 8-96 2-92 (470)
41 COG1070 XylB Sugar (pentulose 88.1 0.51 1.1E-05 58.8 4.6 88 6-98 2-97 (502)
42 TIGR02259 benz_CoA_red_A benzo 87.7 0.72 1.6E-05 55.1 5.2 72 450-528 352-430 (432)
43 smart00732 YqgFc Likely ribonu 87.6 1.3 2.9E-05 42.1 6.2 47 10-59 3-49 (99)
44 PRK13411 molecular chaperone D 87.6 3.1 6.8E-05 53.6 11.4 62 467-528 308-372 (653)
45 TIGR01315 5C_CHO_kinase FGGY-f 87.5 0.55 1.2E-05 59.0 4.5 84 10-99 2-92 (541)
46 PRK13917 plasmid segregation p 87.4 3.9 8.4E-05 48.6 11.2 39 488-528 294-332 (344)
47 TIGR00904 mreB cell shape dete 87.2 3.1 6.7E-05 49.0 10.2 74 454-529 245-324 (333)
48 COG1940 NagC Transcriptional r 86.8 1.2 2.7E-05 51.6 6.6 55 6-61 4-58 (314)
49 TIGR00241 CoA_E_activ CoA-subs 86.8 2.1 4.6E-05 48.3 8.2 31 298-333 82-113 (248)
50 COG0443 DnaK Molecular chapero 86.4 1.3 2.8E-05 56.2 6.9 61 467-528 290-353 (579)
51 PRK05183 hscA chaperone protei 86.2 9.5 0.00021 49.0 14.5 75 452-528 295-372 (616)
52 TIGR01234 L-ribulokinase L-rib 85.9 0.84 1.8E-05 57.3 4.9 74 452-530 405-481 (536)
53 PRK04123 ribulokinase; Provisi 85.7 0.9 1.9E-05 57.2 5.0 73 453-530 409-484 (548)
54 PRK13317 pantothenate kinase; 85.6 1.4 3E-05 50.9 6.0 74 451-529 192-271 (277)
55 PTZ00186 heat shock 70 kDa pre 85.3 11 0.00024 48.8 14.5 61 467-528 334-397 (657)
56 TIGR02628 fuculo_kin_coli L-fu 85.2 2 4.3E-05 53.0 7.6 80 9-95 2-90 (465)
57 COG4972 PilM Tfp pilus assembl 83.6 26 0.00057 41.2 14.9 244 172-516 56-320 (354)
58 PTZ00294 glycerol kinase-like 83.6 1.2 2.6E-05 55.5 4.8 75 452-530 375-451 (504)
59 PLN02295 glycerol kinase 83.4 1.1 2.4E-05 55.9 4.4 73 452-528 376-455 (512)
60 PRK15027 xylulokinase; Provisi 83.3 1 2.2E-05 55.8 4.0 72 9-87 1-79 (484)
61 COG1077 MreB Actin-like ATPase 81.3 3.9 8.5E-05 47.7 7.3 39 489-528 287-327 (342)
62 PLN02669 xylulokinase 81.0 5 0.00011 50.8 8.9 78 2-85 2-99 (556)
63 PRK09698 D-allose kinase; Prov 78.8 5.4 0.00012 46.1 7.6 53 6-60 2-54 (302)
64 KOG0100 Molecular chaperones G 78.1 2.1 4.5E-05 50.6 3.8 38 290-329 205-242 (663)
65 PRK09557 fructokinase; Reviewe 77.7 3.8 8.3E-05 47.4 5.9 49 9-59 1-49 (301)
66 PRK13311 N-acetyl-D-glucosamin 77.0 4 8.6E-05 46.2 5.7 49 9-59 1-49 (256)
67 TIGR03286 methan_mark_15 putat 76.7 5 0.00011 48.4 6.6 36 289-326 220-255 (404)
68 PRK13317 pantothenate kinase; 75.8 2.6 5.6E-05 48.7 3.8 28 8-37 2-29 (277)
69 PRK14101 bifunctional glucokin 75.2 5.6 0.00012 51.2 7.0 48 8-59 18-65 (638)
70 TIGR01175 pilM type IV pilus a 74.7 33 0.00073 40.4 12.9 23 313-335 189-212 (348)
71 PRK13310 N-acetyl-D-glucosamin 72.8 5.6 0.00012 46.0 5.6 49 9-59 1-49 (303)
72 TIGR02851 spore_V_T stage V sp 72.5 24 0.00052 38.3 9.9 88 746-848 54-148 (180)
73 TIGR03192 benz_CoA_bzdQ benzoy 71.5 5.9 0.00013 46.1 5.3 49 8-59 32-80 (293)
74 TIGR01312 XylB D-xylulose kina 69.0 7 0.00015 48.2 5.6 75 452-530 359-435 (481)
75 TIGR00744 ROK_glcA_fam ROK fam 69.0 10 0.00022 44.1 6.7 48 11-61 1-48 (318)
76 PRK13929 rod-share determining 66.4 9.4 0.0002 45.1 5.8 61 468-529 257-323 (335)
77 PRK00292 glk glucokinase; Prov 65.5 13 0.00027 43.5 6.6 47 8-58 2-49 (316)
78 TIGR01174 ftsA cell division p 65.1 13 0.00028 44.5 6.7 24 311-334 195-219 (371)
79 TIGR00555 panK_eukar pantothen 64.6 6.5 0.00014 45.5 3.8 74 451-529 200-279 (279)
80 PF06723 MreB_Mbl: MreB/Mbl pr 63.1 15 0.00032 43.5 6.5 221 249-528 74-317 (326)
81 COG1069 AraB Ribulose kinase [ 62.8 4.9 0.00011 49.7 2.5 89 7-101 2-98 (544)
82 TIGR00555 panK_eukar pantothen 62.8 24 0.00051 41.0 7.9 30 10-40 2-31 (279)
83 TIGR02259 benz_CoA_red_A benzo 61.6 11 0.00023 45.5 5.0 32 8-39 2-33 (432)
84 TIGR02261 benz_CoA_red_D benzo 59.6 15 0.00032 42.3 5.4 21 9-29 2-22 (262)
85 PRK12408 glucokinase; Provisio 58.3 14 0.00031 43.7 5.4 25 6-30 14-38 (336)
86 PRK11678 putative chaperone; P 58.1 9.1 0.0002 47.3 3.8 41 287-330 187-227 (450)
87 PRK05082 N-acetylmannosamine k 56.3 19 0.00041 41.5 5.8 49 10-59 3-51 (291)
88 PLN03184 chloroplast Hsp70; Pr 55.4 12 0.00025 48.7 4.3 41 287-330 202-242 (673)
89 PRK13927 rod shape-determining 55.3 9 0.00019 45.0 3.0 62 467-529 254-321 (334)
90 CHL00094 dnaK heat shock prote 55.1 11 0.00024 48.5 3.9 40 288-330 166-205 (621)
91 PRK01433 hscA chaperone protei 54.3 13 0.00029 47.5 4.4 41 287-330 171-211 (595)
92 TIGR01991 HscA Fe-S protein as 54.1 14 0.00029 47.4 4.5 63 465-528 291-356 (599)
93 PF00480 ROK: ROK family; Int 52.6 8.1 0.00018 40.8 1.9 46 12-60 1-46 (179)
94 PRK09472 ftsA cell division pr 51.3 17 0.00036 44.5 4.5 24 312-335 204-228 (420)
95 COG0849 ftsA Cell division ATP 47.9 25 0.00054 43.0 5.2 65 250-337 164-229 (418)
96 PRK13331 pantothenate kinase; 47.6 41 0.00088 38.5 6.5 59 8-84 7-65 (251)
97 KOG0101 Molecular chaperones H 46.2 20 0.00043 45.7 4.0 43 286-329 172-214 (620)
98 KOG1322 GDP-mannose pyrophosph 45.5 70 0.0015 37.8 7.9 79 176-276 43-122 (371)
99 cd04742 NPD_FabD 2-Nitropropan 45.3 79 0.0017 38.8 8.8 54 170-223 47-102 (418)
100 PF01968 Hydantoinase_A: Hydan 45.1 13 0.00028 43.2 2.1 20 10-30 79-98 (290)
101 PF02782 FGGY_C: FGGY family o 43.9 35 0.00076 36.5 5.1 74 452-529 118-193 (198)
102 TIGR00749 glk glucokinase, pro 43.1 31 0.00068 40.3 4.9 39 456-497 234-272 (316)
103 PF10144 SMP_2: Bacterial viru 43.0 29 0.00063 38.6 4.3 57 772-853 88-146 (210)
104 COG0554 GlpK Glycerol kinase [ 41.1 23 0.0005 43.6 3.4 72 453-528 372-445 (499)
105 PF05378 Hydant_A_N: Hydantoin 40.0 19 0.00041 38.8 2.3 16 315-330 2-17 (176)
106 PRK10719 eutA reactivating fac 39.7 39 0.00084 41.8 5.0 28 311-338 145-173 (475)
107 KOG1794 N-Acetylglucosamine ki 39.5 96 0.0021 36.2 7.7 40 455-494 230-272 (336)
108 TIGR03123 one_C_unchar_1 proba 38.7 99 0.0021 36.7 8.0 20 11-30 1-20 (318)
109 PF00012 HSP70: Hsp70 protein; 38.6 14 0.00031 46.8 1.3 62 466-528 308-372 (602)
110 PRK11477 carbohydrate diacid t 38.4 69 0.0015 38.5 7.0 72 770-853 22-96 (385)
111 PRK13324 pantothenate kinase; 34.2 1.1E+02 0.0023 35.3 7.2 65 9-83 1-65 (258)
112 PF08841 DDR: Diol dehydratase 32.9 37 0.0008 39.3 3.1 45 286-334 111-158 (332)
113 PF03445 DUF294: Putative nucl 31.4 1.7E+02 0.0038 30.2 7.6 92 451-573 14-105 (138)
114 cd03411 Ferrochelatase_N Ferro 29.5 1.4E+02 0.003 31.5 6.7 91 166-273 64-154 (159)
115 PRK09732 hypothetical protein; 29.4 2.2E+02 0.0048 29.6 7.8 75 769-853 27-115 (134)
116 PRK00047 glpK glycerol kinase; 29.1 1.2E+02 0.0026 37.9 7.1 75 452-530 372-448 (498)
117 PF06277 EutA: Ethanolamine ut 29.1 77 0.0017 39.3 5.2 52 287-343 123-175 (473)
118 PF05651 Diacid_rec: Putative 28.5 1.2E+02 0.0026 31.5 5.8 73 769-853 16-91 (135)
119 TIGR02814 pfaD_fam PfaD family 28.3 2.2E+02 0.0048 35.3 8.9 54 170-223 52-107 (444)
120 PF03991 Prion_octapep: Copper 28.1 30 0.00065 18.9 0.7 8 1256-1263 1-8 (8)
121 PRK13326 pantothenate kinase; 28.0 9.8E+02 0.021 27.6 15.1 181 242-516 59-243 (262)
122 PTZ00294 glycerol kinase-like 28.0 1.4E+02 0.003 37.4 7.4 73 9-86 3-84 (504)
123 PRK14061 unknown domain/lipoat 27.1 1.2E+02 0.0025 38.8 6.4 61 768-851 84-144 (562)
124 PRK10640 rhaB rhamnulokinase; 26.4 2.4E+02 0.0052 35.1 9.1 101 418-531 318-420 (471)
125 PF02541 Ppx-GppA: Ppx/GppA ph 26.2 66 0.0014 37.0 3.9 25 310-334 110-135 (285)
126 PRK13320 pantothenate kinase; 26.0 1.8E+02 0.0039 33.1 7.2 30 8-38 2-31 (244)
127 PRK04123 ribulokinase; Provisi 25.6 2E+02 0.0042 36.5 8.2 86 7-97 2-101 (548)
128 COG3473 Maleate cis-trans isom 24.8 1.9E+02 0.0041 32.3 6.6 51 166-225 158-212 (238)
129 PF09663 Amido_AtzD_TrzD: Amid 24.5 2.7E+02 0.0058 33.3 8.1 134 400-599 21-164 (365)
130 TIGR02627 rhamnulo_kin rhamnul 24.2 1.2E+02 0.0026 37.5 5.8 79 11-98 1-90 (454)
131 COG4819 EutA Ethanolamine util 23.8 1E+02 0.0022 36.5 4.6 53 287-344 125-178 (473)
132 COG4334 Uncharacterized protei 23.0 1.2E+02 0.0025 30.4 4.1 32 587-625 75-107 (131)
133 PRK02794 DNA polymerase IV; Pr 22.8 6.7E+02 0.015 30.7 11.8 83 546-639 287-372 (419)
134 TIGR01234 L-ribulokinase L-rib 22.8 1.8E+02 0.0038 36.8 7.0 85 9-98 2-105 (536)
135 KOG3123 Diphthine synthase [Tr 22.5 71 0.0015 35.4 2.9 99 481-594 72-176 (272)
136 COG0145 HyuA N-methylhydantoin 22.4 51 0.0011 42.8 2.2 20 10-30 280-299 (674)
137 PF12390 Se-cys_synth_N: Selen 21.9 1.3E+02 0.0027 24.6 3.6 26 937-962 14-39 (40)
138 PRK10331 L-fuculokinase; Provi 21.6 2.2E+02 0.0048 35.3 7.5 75 452-530 358-434 (470)
139 TIGR01311 glycerol_kin glycero 21.5 2.1E+02 0.0046 35.7 7.3 75 452-530 368-444 (493)
140 PTZ00288 glucokinase 1; Provis 21.5 1.5E+02 0.0033 36.3 5.8 38 456-497 298-335 (405)
141 PF01301 Glyco_hydro_35: Glyco 21.2 3.2E+02 0.0069 32.3 8.3 110 154-273 9-145 (319)
142 TIGR02628 fuculo_kin_coli L-fu 21.1 2.1E+02 0.0046 35.4 7.1 74 453-530 363-438 (465)
143 PRK06033 hypothetical protein; 20.6 1.8E+02 0.004 27.6 4.9 29 791-824 12-40 (83)
144 COG0329 DapA Dihydrodipicolina 20.1 2.1E+02 0.0045 33.6 6.4 52 171-222 22-78 (299)
145 TIGR01314 gntK_FGGY gluconate 20.1 2.2E+02 0.0048 35.6 7.1 78 9-92 1-85 (505)
146 PRK08983 fliN flagellar motor 20.0 1.7E+02 0.0037 30.2 4.9 48 790-851 55-102 (127)
No 1
>PLN02666 5-oxoprolinase
Probab=100.00 E-value=6.4e-289 Score=2725.56 Aligned_cols=1242 Identities=81% Similarity=1.273 Sum_probs=1155.6
Q ss_pred CCCCCCCcEEEEEeccCccccEEEEecC-CceEEEEEeccCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEE
Q 000831 1 MGSVKEEKLRFCIDRGGTFTDVYAEIPG-QLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWI 79 (1264)
Q Consensus 1 ~~~~~~~~~~iGIDvGGTfTD~v~~~~~-g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~i 79 (1264)
|+|--.++|||||||||||||+|++|++ ++ +.+.|+|||||+|+++++++||+++++.+.++.++...++++++|+.|
T Consensus 2 ~~~~~~~~~rigIDvGGTFTD~v~~~~~~~~-~~~~K~~sttp~d~~~gv~~Gi~~~l~~~~~~~~~~~~~~~~~~i~~v 80 (1275)
T PLN02666 2 MGSRGSRKFRFCIDRGGTFTDVYAEVPGGSD-FRVLKLLSVDPANYDDAPREGIRRILEEVTGKKIPRSAKIPTERIEWI 80 (1275)
T ss_pred CCCCCCCCEEEEEECCcCCEeEEEEecCCCe-EEEEEeCCCCCCChhHHHHHHHHHHHHHHhcCCcccccCCChHHccEE
Confidence 6676678899999999999999999754 45 789999997799999999999999999876555555456778899999
Q ss_pred EEehhHHhhHhhhcCCCcEEEEEecCchhhhhhccCCCCCCccccccCCCCcceeEEEeeeeeecccccccccccceeec
Q 000831 80 RMGTTVATNALLERKGERIALCVTRGFKDLLQIGNQARPQIFDLTVSTPSNLYEEVIEVDERVELVLENEKENQESLVKG 159 (1264)
Q Consensus 80 ~~GTT~~tNAller~g~~vgli~t~GfrDvl~i~r~~~~~~~~~~~~~P~~l~~~~~~v~eRi~~~g~~~~~~~~~~~~G 159 (1264)
+||||++|||||||||+|||||||+||||+|+|+|+.||++|++++.+|.||+++++||+||++++| .+.....|
T Consensus 81 ~hGTT~atNAllerkGa~v~litT~GfrD~l~igr~~r~~~~~~~~~~p~pl~~~~~ev~eR~~~~~-----~~~~~~~~ 155 (1275)
T PLN02666 81 RMGTTVATNALLERKGERIALCVTKGFKDLLQIGNQARPNIFDLTVSKPSNLYEEVVEVDERVVLAL-----EEDGDDAG 155 (1275)
T ss_pred EEechHHHHHHHhccCCcEEEEecccchhheeccccCCCccccccccCCccchhhEEeeCceEeccc-----cccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999973 01112224
Q ss_pred cc---Ccee---EEecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCcHHHHHHHHHHHhcCCccEEEeecccCcCCcc
Q 000831 160 VS---GELV---RVVKPVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGLGFRHVSLSSALTPMVRAV 233 (1264)
Q Consensus 160 g~---~~~G---~v~~plde~~v~~~~~~l~~~gv~avaV~~l~S~~np~hE~~v~ei~~~~~~~~VtlS~ei~p~~~e~ 233 (1264)
|+ |.+| ++++|||+++|++++++|+++|+++||||++|||+||+||++++||+++....+|++||||+|+++||
T Consensus 156 G~~~~g~~G~~~~v~~plde~~v~~~~~~l~~~gv~avAV~~l~S~~NP~HE~~v~ei~~e~~~~~VslShei~~~~~e~ 235 (1275)
T PLN02666 156 GSVVKGVTGELVEVVKPLDEEALRPLLQGLLDKGIRSLAVVLMHSYTYPAHERAVGKLARSMGFKQVSLSSALVPMVRAV 235 (1275)
T ss_pred CccccccCCcceeEecCCCHHHHHHHHHHHHHcCCCEEEEEeecCcCChHHHHHHHHHHHhcCCCcEEEcchhhhhcccc
Confidence 43 2234 79999999999999999999999999999999999999999999999986434899999999999999
Q ss_pred cchhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceEEEEEcCCCccccccccccceecccchhHHHHHHHhccccCCCCC
Q 000831 234 PRGLTASVDAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFGLETEKP 313 (1264)
Q Consensus 234 eR~~ttvlNAyl~p~~~~~l~~l~~~l~~~~~~~~l~i~~sdGG~~s~~~~~pv~ti~SGPaagv~Ga~~l~~~~~g~~~ 313 (1264)
||++||+|||||+|+|++||++|+++|++.++.+||+|||||||+|++++++|++|++||||||++|+++++++..+.+|
T Consensus 236 eR~~TavlnAyl~p~~~~yl~~l~~~l~~~g~~~~l~im~sdGG~~~~~~a~~~~ti~SGPAagv~Gaa~l~~~~~g~~~ 315 (1275)
T PLN02666 236 PRGHTASVDAYLTPVIKEYLSGFLSGFDDGLGDVNVLFMQSDGGLTPESRFSGHKAILSGPAGGVVGYAQTTFGLETEKP 315 (1275)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCcCCHHHhcCCCeEEECHHHHHHHHHHHhccccCCCC
Confidence 99999999999999999999999999999888899999999999999999999999999999999999998844568899
Q ss_pred EEEEecCCCceEeeeeccccceeeeeEEccEEEeecceeeEEEeccCCcEEEEeCCeEEEcccccccCCCcceeccCCCc
Q 000831 314 LIGFDMGGTSTDVSRYAGSYEQVLETQIAGAIIQAPQLDINTVAAGGGSNLMFQLGAFRVGPESVGAHPGPVCYRKGGDL 393 (1264)
Q Consensus 314 ~I~~DmGGTStDv~li~G~~~~~~~~~i~g~~~~~p~~dv~sIGaGGGSi~~v~~g~l~VGP~SaGa~PGpacy~~GG~~ 393 (1264)
+|++||||||||||+|+|.+..+.+.+|+|+|+++||+||+|||+|||||+|+++|.|+|||+|||++|||+||++||+|
T Consensus 316 ~I~~DmGGTTtDv~li~g~~~~~~~~~i~g~~v~~p~~di~sIGaGGGSi~~vd~g~l~VGP~SaGa~PGPacy~~GG~p 395 (1275)
T PLN02666 316 VIGFDMGGTSTDVSRYDGSYEQVLETQTAGVIIQAPQLDINTVAAGGGSKLKFQFGAFRVGPESVGAHPGPVCYRKGGEL 395 (1275)
T ss_pred EEEEecCCceeeeEEEcCceeEeeeeEECcEEEEecceeEEEEcCCCceEEEEcCCeEEECchhcccCccchhhhcCCcc
Confidence 99999999999999999877777888999999999999999999999999999999999999999999999999999999
Q ss_pred cHhHHHHHcCccCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCCCCCCCHHHHHHHHHHHHHHHhhHHH
Q 000831 394 AVTDANLILGFVIPDYFPSIFGPNEDQPLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANETMCRPI 473 (1264)
Q Consensus 394 TvTDA~l~lG~l~p~~fl~~~g~~g~~~ld~~~a~~a~~~la~~lg~~~~~~~~~~~gl~~eeaA~~i~~~a~~~m~~~i 473 (1264)
|+|||+++|||++|++|+.+++++|+++||.++|++|+++++++|+..-+++..+.+|+++|++|++|+++++++|+++|
T Consensus 396 TvTDA~l~LG~l~p~~f~~~~~~gg~~~ld~~~A~~a~~~la~~l~~~~~~~~~~~~g~~~e~aA~~i~~ia~~~m~~ai 475 (1275)
T PLN02666 396 AVTDANLVLGRVIPDYFPSIFGPNEDEPLDLEATRAAFEALAAQINSYRKSQDPSAKDMSVEEVALGFVRVANEAMCRPI 475 (1275)
T ss_pred eeccHhhhhhhcCccccccccCccccccCCHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877778899999999999999999999964334445566789999999999999999999999
Q ss_pred HHHHHHhCCCCCCceEEEEcCchHHHHHHHHHHcCCCEEEECCCCCccccccccccceEEEEEEEEeecCCCCCHHHHHH
Q 000831 474 RQLTEMKGHETRNHALACFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGLADVVEEAQEPYSAVYGPESVLEVSR 553 (1264)
Q Consensus 474 ~~~~~~~G~dpr~~~lv~~GGag~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ad~~~~~~~~~~~~~~~~~~~~~~~ 553 (1264)
|.++++||+|||||+|++||||||+|||.+|++||+++|+||++++||||||+++||+++++.+++...+++.+.+.+++
T Consensus 476 r~i~~~~G~dpr~~~l~afGGagp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ad~~~d~~~~~~~~~~~~~~~~l~~ 555 (1275)
T PLN02666 476 RQLTEMKGYETANHALACFGGAGPQHACAIARALGMSEVFVHRYCGILSAYGMGLADVVAEAQEPYAAVYGPESLAEASR 555 (1275)
T ss_pred HHHHHHcCCCCCCceEEEecCcHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhhhhhhhhhhhhccccCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEEEEEeeeecCeeEEEEEecccccCCCcccHHHHHHHHHHHHhccccCCCcEEEEE
Q 000831 554 REGILSKQVKQKLQEQGFREESITTETYLNLRYEGTDTAIMVKKRIAEDGSGCGYAVDFEKLFQQEYGFKLQNRNILVCD 633 (1264)
Q Consensus 554 ~~~~l~~~a~~~l~~~G~~~~~i~~~~~~d~rY~gQ~~~i~v~~~~~~~~~~~~l~~~F~~~h~~~yg~~~~~~~vei~~ 633 (1264)
.|++|+++|+++|.++|+.++++++++++||||.||.|+|+||++.....+.+++.++||++|+|+|||..++.+||+++
T Consensus 556 ~~~~L~~~a~~~l~~~g~~~~~~~~~~~~d~RY~GQ~~~l~v~~~~~~~~~~~~l~~~F~~~h~~~yg~~~~~~~veiv~ 635 (1275)
T PLN02666 556 REDALAEKVRQKLQEQGFREDNITTETYLNLRYEGTDTAIMVAEPENGDGSDGDYAAAFVKLFRREYGFKLQNRDILIDD 635 (1275)
T ss_pred HHHHHHHHHHHHHHHcCCCcccEEEEEEEEEEECCCCEEEEeecCcccccCHHHHHHHHHHHHHHHhCcCCCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999864333456899999999999999999999999999
Q ss_pred EEEEEEEecCCCCCCCCCCC-CCCCCccceEEEEe-CcEEEeeEEEcCCCCCCCeeecceEEEeCCeEEEECCCcEEEEe
Q 000831 634 VRVRGIGVTNILKPQAIEPT-SGTPKVEGHYKVFF-NGWHDAPLYKLENLGYGHVMPGPAIIMNGNSTVIVEPNCKAVIT 711 (1264)
Q Consensus 634 ~rv~~~~~~~~~~~~~~~~~-~~~~~~~~~r~v~~-~~~~~~~Vy~r~~L~~g~~i~GPaiIe~~~tT~vv~pg~~~~vd 711 (1264)
+||++++..++|+++..... ..+++++++|++|| ++|+++|||+|++|++|++|+||||||+++||+||||||++++|
T Consensus 636 lrv~~~g~~~~~~~~~~~~~~~~~~~~~~~r~v~~~~~~~~~~vy~r~~L~~G~~i~GPAiie~~~sT~vv~pg~~~~vd 715 (1275)
T PLN02666 636 VRVRGIGVTNILKPLPLDAASGGLPEPERTTKVYFENGWHDTPVYKLENLGPGHEIPGPAIIMNGNSTVVVEPGCKAIVT 715 (1275)
T ss_pred EEEEEEEecCCCCcCccccccCCCCCCcceEEEEECCcEEEeeEEEHHHCCCcCEeecCEEEecCCceEEECCCCEEEEC
Confidence 99999998887654433221 22344567899999 78999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEeccccc-c----ccccccCChhhHHHHHhHHHHHHHHHHHHHHHhhcccchhccccccceeeCCCCCeeee
Q 000831 712 KYGNIKIEIESISST-I----NIAENIADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVAN 786 (1264)
Q Consensus 712 ~~g~~~i~~~~~~~~-~----~~~~~~~Dpit~eIi~~~L~ai~~Em~~~l~RtA~Spii~e~~D~s~aI~d~~G~lva~ 786 (1264)
++|||+|++.....+ . .....++||||+|||||||.+|++||+.+|+|||+||+|||++||+|+|||++|++++|
T Consensus 716 ~~g~l~i~~~~~~~~~~~~~~~l~~~~~DpitleIi~~~l~aiaeEM~~~l~RtA~Sp~i~E~~D~s~ai~d~~G~lva~ 795 (1275)
T PLN02666 716 KYGNIKIEVENSAEQSAEETVKAAEKKADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVAN 795 (1275)
T ss_pred CCCcEEEeecccccccccccccccccCCCcHhHHHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceEEECCCCCeeec
Confidence 999999987532222 1 11246689999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeccchHHHHHHHHHccCCCCCCcEEEecCCCCCCCCCCCeEEEEeeeeCCeEEEEEeccccccccCCCCCCCC
Q 000831 787 APHVPVHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHPCAGGSHLPDITVITPVFDNGKLVFFVASRGHHAEIGGITPGSM 866 (1264)
Q Consensus 787 ~~~ip~h~gs~~~~v~~il~~~~~~l~pGDv~i~NDPy~Gg~Hl~Dv~~~~PVF~~Gelv~~~~~~~H~~DiGG~~PGs~ 866 (1264)
+.++|+|+++|+.+|++++++|+++|+|||||++||||.||+|+||+++++|||++|||++|+++++||+||||++||||
T Consensus 796 ~~~ip~hlgsm~~~v~~~l~~~~~~l~pGDV~i~NDPy~GgtHl~Dv~~~~PVF~~G~lv~f~a~~~H~~DiGG~~PGs~ 875 (1275)
T PLN02666 796 APHVPVHLGAMSSTVRWQLEYWGENLNEGDVLVTNHPQAGGSHLPDITVITPVFRDGKIVFFVASRGHHADIGGITPGSM 875 (1275)
T ss_pred CCCceEEeecCHHHHHHHHHhccCCCCCCCEEEEcCCcCCCCcCCceEEEeCeEECCEEEEEEEEeeeeeccCCCCCCCC
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCcccccEEEEECCeeCHHHHHHHHcCCCC-CCCCCCCCCccCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 000831 867 PPFSKSIWEEGAAIKAFKLVEKGIFQEEGITKLLLDPSS-EDSAHKIPGTRRLQDNLSDLRAQVAANQRGISLIKELIEQ 945 (1264)
Q Consensus 867 ~~~Atei~qEGlriPpvKl~~~G~~~~d~v~~li~~~~~-~~r~~~~~n~R~P~~~~gDl~A~iaa~~~g~~Rl~eLier 945 (1264)
+++|||||||||||||+||+++|++|+|.++++|++ |+ .+-+|+.+++|+|+++++||+||||||++|++||.|||+|
T Consensus 876 ~~~at~i~qEGLriPpvKL~~~G~~~~d~v~~li~~-N~~~~~~~~~p~~R~P~~~~gDl~AqiAA~~~g~~Rl~el~~~ 954 (1275)
T PLN02666 876 PPFSKTIWEEGAAIKAFKLVEGGVFQEEGITKLLQA-PGSDETAPKIPGTRRLQDNLSDLRAQVAANQRGISLIKELIDE 954 (1275)
T ss_pred CCCCCCHHHCccccccEEEEECCEECHHHHHHHHHh-CcccccccCCCCCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999756788887 43 2346666678999999999999999999999999999999
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hcccCCcccCCCcceeEEEEEEEeeCCceEEEEEEEE
Q 000831 946 YGLKTVQAYMTYVQLNAEEAVREMLKSVA--------------AKVSSESAKDGERNFVTIEEEDYMDDGSVIHLKLTID 1011 (1264)
Q Consensus 946 yG~d~v~~~~~~~~d~sE~~~R~~I~~iP--------------dG~~g~~~~~~~~~~~~y~~~~~~Dd~~~i~v~vtvt 1011 (1264)
||.|+|+++++++++|+|+++|++|++|| || +|++++|+||+.|++|+|+|+
T Consensus 955 yG~~~v~~~~~~~~~~se~~~R~~I~~lP~~~~~~~~~~~~~~dG--------------~y~~~~~lDd~~pi~v~v~vt 1020 (1275)
T PLN02666 955 YGLGTVQAYMGHVQANAELAVREMLKSVAARVSSESPTFGDGSSV--------------TLEAEDYMDDGSPIHLTLTID 1020 (1275)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCc--------------eEEEEEEecCCcEEEEEEEEE
Confidence 99999999999999999999999999999 76 999999999989999999999
Q ss_pred ecCCEEEEEccCCccccCCCcCcchHHHHHHHHHHHhhhccCCCCCCcccccceEEEcCCCccccCCCCCcccccchhhh
Q 000831 1012 SDKGEAFFDFSGTSSEVLGNWNAPEAVTAAAVIYCLRCLVDVEIPLNQGCLAPVKIHIPPGSFLSPSEKAAVVGGNVLTS 1091 (1264)
Q Consensus 1012 ~~gd~i~vDfsGtspq~~g~iN~~~~~t~aa~~~~~~~~~~pdiP~N~G~~rpi~v~~PeGsilnp~~Pa~v~~~~~~~~ 1091 (1264)
++||+++|||+||+||+++++||+++.|.++++++++++++||+|.|+|+||||+|++|+||||||++||||+++++.++
T Consensus 1021 ~~gd~i~vDftGT~pq~~g~iN~~~~~t~aa~~~~l~~~~~pdiP~N~G~~rpi~v~~P~Gtilnp~~PAav~~~~~~~~ 1100 (1275)
T PLN02666 1021 RRKGSAVFDFEGTSPEVYGNWNAPPAVTAAAVIYCLRCLVDVDIPLNQGCLAPVTIRIPPGSFLSPSDKAAVVGGNVLTS 1100 (1275)
T ss_pred ECCCEEEEEeCCCchhcCCCcCcCHHHHHHHHHHHHHHHcCCCCCCCCeeeeeEEEEcCCCCeeCCCCCCceeccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred HHHHHHHHHHHHhhccCCCCcceeeeecceeEEEEeecccCCCCCCCCCCCCccCcCCCCCCCChhhhcccccEEEEEee
Q 000831 1092 QRITDVVLTAFQACACSQGCMNNLTFGDSTFGYYETIGGGSGAGPTWDGTSGVQCHMTNTRMTDPEIFEQRYPVFLHKFG 1171 (1264)
Q Consensus 1092 ~~i~~~v~~Al~~~a~~~g~~~~~~~g~~~f~~~~~~~GG~GA~~~~DG~~~~~~~~~~~~~~~vE~~E~~~Pl~v~~~~ 1171 (1264)
++++|++++||+++|++++++++++|+.++|.++++++|||||++++||+|+++++++|++|+|+|++|++||++|++|+
T Consensus 1101 ~~v~d~v~~Al~~~A~~~g~~~~~~~~g~~~~~~e~~~GG~GA~~~~DG~~~~~~~~~~~~~~pvE~~E~~~Pl~v~~~~ 1180 (1275)
T PLN02666 1101 QRVTDVVLTAFQACACSQGCMNNLTFGDDTFGYYETIAGGAGAGPTWDGTSGVQCHMTNTRITDPEILERRYPVLLHRFG 1180 (1275)
T ss_pred HHHHHHHHHHHHHHhhccCCcceEEEeCCcEEEEEecccccCCCCCCCCCCccccCCCCCCCCCHHHHhhhCCEEEEEEE
Confidence 99999999999999999999999999888999999999999999999999998888999999999999999999999999
Q ss_pred eecCCCCCCcccCcCceEEEEEEeeceEEEEecCCcccCCCccCCCCCCCCCceEEEccCCeEEeeCCcceEEcCCCCEE
Q 000831 1172 LREKSGGAGLHRGGDGLVREIEFRRPVVVSILSERRVHAPRGLKGGKDGARGANYLITKDKRKVYLGGKNTVQVQPGEIL 1251 (1264)
Q Consensus 1172 l~~DSgGaG~~RGG~G~~~~~~~~~~~~~~~~~~r~~~~p~Gl~GG~~G~~~~~~~~~~~g~~~~~~~~~~~~l~~Gd~~ 1251 (1264)
+++||||+||||||+|++++|+++.+..++++.||.+++|||++||.+|+++.+++++++++++.++++..+.|++||+|
T Consensus 1181 l~~dSGGaGk~RGG~G~~~~~~~l~~~~~~~~~dr~~~~p~Gl~GG~~G~~~~~~i~~~~~~~~~l~~~~~~~l~~GD~l 1260 (1275)
T PLN02666 1181 LREGSGGDGLHRGGDGVVREIEFRRPVTVSILSERRVHAPRGLAGGGDGARGANLLIRKDGRRVNLGGKNTVHVEAGERL 1260 (1275)
T ss_pred eccCCCCCCccCCCCeEEEEEEECCCeEEEEEeCCCEeCCccccCCcCCcCCeEEEEcCCCcEEecCCcceEEECCCCEE
Confidence 99999999999999999999999999889999999999999999999999999999988887777777778899999999
Q ss_pred EEecCCCcccCC
Q 000831 1252 QILTPAGGGWGS 1263 (1264)
Q Consensus 1252 ~~~t~GGGGyGd 1263 (1264)
+++|+|||||||
T Consensus 1261 ~~~t~GGGG~Gd 1272 (1275)
T PLN02666 1261 RILTPGGGGYGS 1272 (1275)
T ss_pred EEECCCcCccCC
Confidence 999999999998
No 2
>KOG1939 consensus Oxoprolinase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-244 Score=2091.67 Aligned_cols=1233 Identities=65% Similarity=1.050 Sum_probs=1159.7
Q ss_pred cEEEEEeccCccccEEEEecC-CceEEEEEeccCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEEehhHH
Q 000831 8 KLRFCIDRGGTFTDVYAEIPG-QLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRMGTTVA 86 (1264)
Q Consensus 8 ~~~iGIDvGGTfTD~v~~~~~-g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~i~~GTT~~ 86 (1264)
+++|.||-||||||+++.-++ .+ ..+.|.+|.+|.++.+++.+||+++|+...++.+|+...++.+.|..|++|||+|
T Consensus 2 ~~r~aIDrGGTFTDv~~~~~~~~~-~~v~KlLSvdP~nY~DAp~EgIRriLe~~~gk~ipr~~~ldts~i~~iRmGTTvA 80 (1247)
T KOG1939|consen 2 KLRFAIDRGGTFTDVIAFIPNRSE-VEVLKLLSVDPKNYDDAPTEGIRRILEEETGKKIPRGVPLDTSKISWIRMGTTVA 80 (1247)
T ss_pred CeEEEEcCCCceEEEEEecCCCCC-ceEEEEeecCcccCCCCcHHHHHHHHHHhhCCccCCCCccCccceeeEEecchhh
Confidence 589999999999999998554 44 6899999999999999999999999999999999999889999999999999999
Q ss_pred hhHhhhcCCCcEEEEEecCchhhhhhccCCCCCCccccccCCCCcceeEEEeeeeeecccccccccccceeecccCceeE
Q 000831 87 TNALLERKGERIALCVTRGFKDLLQIGNQARPQIFDLTVSTPSNLYEEVIEVDERVELVLENEKENQESLVKGVSGELVR 166 (1264)
Q Consensus 87 tNAller~g~~vgli~t~GfrDvl~i~r~~~~~~~~~~~~~P~~l~~~~~~v~eRi~~~g~~~~~~~~~~~~Gg~~~~G~ 166 (1264)
|||||||||.|++||+|+||+|.|.||.|.||++||+..++|.+|.+.++||+||+-.+.+..||.+...-..-.|..-+
T Consensus 81 TNalLERkGer~a~i~tkGFkdll~IGnQaRP~iFdl~i~kp~~LY~~VvEvdeRV~l~~~~~~~~~~~~~~~~sGe~~r 160 (1247)
T KOG1939|consen 81 TNALLERKGERIALIITKGFKDLLLIGNQARPDIFDLNIRKPEVLYEDVVEVDERVVLEDQDEDPLDESAQIEVSGEFLR 160 (1247)
T ss_pred hhHHHhhcCCeEEEEecccchhhhhcccccCCceeeecccCcchhhhhheeccceeehhhhccCccccccccccCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999988877777544443333333348
Q ss_pred EecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCcHHHHHHHHHHHhcCCccEEEeecccCcCCcccchhhhhhhhccc
Q 000831 167 VVKPVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGLGFRHVSLSSALTPMVRAVPRGLTASVDAYLT 246 (1264)
Q Consensus 167 v~~plde~~v~~~~~~l~~~gv~avaV~~l~S~~np~hE~~v~ei~~~~~~~~VtlS~ei~p~~~e~eR~~ttvlNAyl~ 246 (1264)
+++++||+++++.++.|.++|+++|||||+|||..|.||+.+.+|+++.|+.+|++||+++|.++...|..|++.+|||.
T Consensus 161 v~kk~De~alr~~Lk~l~~~G~~siav~l~HSyt~P~HE~~v~kiA~e~GF~~vSLSs~l~PMik~vpR~~ta~adAYLt 240 (1247)
T KOG1939|consen 161 VEKKVDEEALRQDLKELYDKGVKSIAVVLLHSYTYPDHELEVGKIAKEIGFSHVSLSSKLMPMIKVVPRGFTACADAYLT 240 (1247)
T ss_pred EEccCCHHHHHHHHHHHHHcCcceEeeeeeccccCCcHHHHHHHHHHHhCccceechhccccceeeecccchhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEEcCCCccccccccccceecccchhHHHHHHHhccccCCCCCEEEEecCCCceEe
Q 000831 247 PVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDV 326 (1264)
Q Consensus 247 p~~~~~l~~l~~~l~~~~~~~~l~i~~sdGG~~s~~~~~pv~ti~SGPaagv~Ga~~l~~~~~g~~~~I~~DmGGTStDv 326 (1264)
|++++||+.|++.|.... ...+.+||||||+..++.++.++.|+||||+|++|.+..++.......+|.||||||||||
T Consensus 241 p~i~~YL~~f~sgf~~~~-~~~v~FMqSDGGL~d~~~Fsg~~aIlSGPAgGvVG~a~T~~~~~~~~P~IGFDMGGTSTDV 319 (1247)
T KOG1939|consen 241 PVIKEYLDGFKSGFSDIL-STRVQFMQSDGGLVDMDKFSGLRAILSGPAGGVVGYASTSYDAEDKKPLIGFDMGGTSTDV 319 (1247)
T ss_pred HHHHHHHHHHhhcccccc-CcceEEEecCCCccccccccchhhhhcCCCcceeeeeeeccccccCCceeeecCCCCccce
Confidence 999999999999988754 4589999999999999999999999999999999998887666677889999999999999
Q ss_pred eeeccccceeeeeEEccEEEeecceeeEEEeccCCcEEEEeCCeEEEcccccccCCCcceeccCCCccHhHHHHHcCccC
Q 000831 327 SRYAGSYEQVLETQIAGAIIQAPQLDINTVAAGGGSNLMFQLGAFRVGPESVGAHPGPVCYRKGGDLAVTDANLILGFVI 406 (1264)
Q Consensus 327 ~li~G~~~~~~~~~i~g~~~~~p~~dv~sIGaGGGSi~~v~~g~l~VGP~SaGa~PGpacy~~GG~~TvTDA~l~lG~l~ 406 (1264)
|...|..+...++.+.|..++.|.+||+|+.|||||...+..|.++|||+||||+|||+||.+||++|+|||||+||++-
T Consensus 320 sRY~G~~EhV~Et~taGi~IQaPQLDI~TVAAGGgSrLf~r~glf~VGPeSagahPGPacYrkGGpLtvTDANl~LGrii 399 (1247)
T KOG1939|consen 320 SRYDGSYEHVIETTTAGITIQAPQLDINTVAAGGGSRLFFRNGLFRVGPESAGAHPGPACYRKGGPLTVTDANLLLGRII 399 (1247)
T ss_pred eccCCceeeEEEeecceEEEecCcccceeeecCCceeEEEecCcEEECcccccCCCCchhhccCCcceeehhhhhhhccc
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC
Q 000831 407 PDYFPSIFGPNEDQPLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRN 486 (1264)
Q Consensus 407 p~~fl~~~g~~g~~~ld~~~a~~a~~~la~~lg~~~~~~~~~~~gl~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~ 486 (1264)
|++|+++|||+....||.|.++..|++|...++..|++. +++||+|.|++++||++|++.||.++..||+|+..
T Consensus 400 P~~FPkIFGPnEdesld~e~tr~kF~eL~~~IN~~l~s~------~t~eevA~GFi~VANEtMcRPIR~lTesrG~d~s~ 473 (1247)
T KOG1939|consen 400 PDFFPKIFGPNEDESLDVEITREKFEELTDEINIDLKSE------LTVEEVALGFIKVANETMCRPIRALTESRGHDTSN 473 (1247)
T ss_pred hhhcccccCCCcccccchHHHHHHHHHHHHHHhhhcccc------ccHHHHHHHHHHhhhhhhcchHHHHHhhcCCcccc
Confidence 999999999999999999999999999999998655544 99999999999999999999999999999999999
Q ss_pred ceEEEEcCchHHHHHHHHHHcCCCEEEECCCCCccccccccccceEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHH
Q 000831 487 HALACFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGLADVVEEAQEPYSAVYGPESVLEVSRREGILSKQVKQKL 566 (1264)
Q Consensus 487 ~~lv~~GGag~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~l 566 (1264)
.+|.+|||||++|||++|+.|||.+|+|+.|++++|||||++||+.++....+...+++.........|..|.+++.+.|
T Consensus 474 H~LacFGGAGgQHacaiA~~LGI~kVlIHkYssiLSAYGmaLAdVv~e~QeP~~~v~~e~~~~~vk~r~~~l~k~~~~~L 553 (1247)
T KOG1939|consen 474 HALACFGGAGGQHACAIAKSLGILKVLIHKYSSILSAYGMALADVVEESQEPCSFVLGEESLSLVKRRFDVLSKEAPKKL 553 (1247)
T ss_pred eeeEeecCCCcchhHHHHhhcchhhhhHHHHHHHHhhhhhhhhhhhhhhcCccceeecccchhhhhhhhhhhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999988888777788889999999999999
Q ss_pred HHcCCCCCcEEEEEEEeeeecCeeEEEEEecccccCCCcccHHHHHHHHHHHHhccccCCCcEEEEEEEEEEEEecCCCC
Q 000831 567 QEQGFREESITTETYLNLRYEGTDTAIMVKKRIAEDGSGCGYAVDFEKLFQQEYGFKLQNRNILVCDVRVRGIGVTNILK 646 (1264)
Q Consensus 567 ~~~G~~~~~i~~~~~~d~rY~gQ~~~i~v~~~~~~~~~~~~l~~~F~~~h~~~yg~~~~~~~vei~~~rv~~~~~~~~~~ 646 (1264)
.++|+..++++++.++.|||.|....+.|..+.+. ..+..+.|.+.|++.|||.++++.|-|..+|+|++|+...+.
T Consensus 554 ~eqgf~~sqIs~E~flnlRYegtdtalMi~~~~~~---~~df~~~F~e~~k~efGF~l~dr~IiidDiRIRaigks~tv~ 630 (1247)
T KOG1939|consen 554 EEQGFLESQISTELFLNLRYEGTDTALMISKKKGK---QWDFRAEFLETYKQEFGFVLEDRNIIIDDIRIRAIGKSGTVQ 630 (1247)
T ss_pred HhhccchhheeeeeeeeeeecCCceeEEEecCCCC---CccHHHHHHHHHHhhcCeEeecCceEEEeeEEEeecccCccc
Confidence 99999999999999999999999999999765432 368999999999999999999999999999999999887553
Q ss_pred CCCCCCC---CCCCCccceEEEEe-CcEEEeeEEEcCCCCCCCeeecceEEEeCCeEEEECCCcEEEEecCCcEEEEEec
Q 000831 647 PQAIEPT---SGTPKVEGHYKVFF-NGWHDAPLYKLENLGYGHVMPGPAIIMNGNSTVIVEPNCKAVITKYGNIKIEIES 722 (1264)
Q Consensus 647 ~~~~~~~---~~~~~~~~~r~v~~-~~~~~~~Vy~r~~L~~g~~i~GPaiIe~~~tT~vv~pg~~~~vd~~g~~~i~~~~ 722 (1264)
..+.... ..++....+.++|| ++|+++|||..+.|++|+.|.|||||.+.++|++|+|.+++++.++|+++.....
T Consensus 631 ~~e~~~~~~~~~~~~~~~~~~~yfe~g~~~~~vy~l~nL~~g~iI~GPA~lid~~sTivieP~~~a~I~~~~~~i~~~~~ 710 (1247)
T KOG1939|consen 631 EKEIKAAAEAQVSAVAKSVSKVYFENGKVDTPVYLLENLPAGHIINGPALLIDKTSTIVIEPSSTATITEHGDVIKDVKT 710 (1247)
T ss_pred hhhhhhhccccCCccccceeeEEEecCccccceEeeccCccCceecCCEEEEcCCceEEEcCcceeEEeecceEEEeccc
Confidence 2222111 12233455678999 8999999999999999999999999999999999999999999999988776654
Q ss_pred ccccccc---ccccCChhhHHHHHhHHHHHHHHHHHHHHHhhcccchhccccccceeeCCCCCeeeecCCCceeeccchH
Q 000831 723 ISSTINI---AENIADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVPVHLGAMSS 799 (1264)
Q Consensus 723 ~~~~~~~---~~~~~Dpit~eIi~~~L~ai~~Em~~~l~RtA~Spii~e~~D~s~aI~d~~G~lva~~~~ip~h~gs~~~ 799 (1264)
..-+.+. ....+|||+++|+.|||++|+|+|+++|+|||-|++|+|..|||||||+++|.|||.++|+|+|+|+|+.
T Consensus 711 ~~~~~~~~~~~~~~~Dpi~lsIFs~RFMsIAeQMGr~LqrTsiStNiKERLDfSCALF~pdGgLVANAPHvPvhLGsMqt 790 (1247)
T KOG1939|consen 711 ARKTMSSVDKIARDLDPIRLSIFSHRFMSIAEQMGRVLQRTSISTNIKERLDFSCALFSPDGGLVANAPHVPVHLGSMQT 790 (1247)
T ss_pred cccccchhhhhhccCCcEEEehhhhHHHHHHHHHHHHHhhhhcccchhhhccceeEeEcCCCCeeccCCCCceeecchHH
Confidence 4444322 2466999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCCCcEEEecCCCCCCCCCCCeEEEEeeeeCC-eEEEEEeccccccccCCCCCCCCCCCCccccccCc
Q 000831 800 TVRWQLKYWRHNLNEGDVLVSNHPCAGGSHLPDITVITPVFDNG-KLVFFVASRGHHAEIGGITPGSMPPFSKSIWEEGA 878 (1264)
Q Consensus 800 ~v~~il~~~~~~l~pGDv~i~NDPy~Gg~Hl~Dv~~~~PVF~~G-elv~~~~~~~H~~DiGG~~PGs~~~~Atei~qEGl 878 (1264)
+|++.+++|+++|+||||+++|+|-.||+||||+|++.|||+++ ++|+|+++++||+||||.+||||+|+++++||||-
T Consensus 791 ~V~~Q~k~~~~kLk~GDVlltNHP~aGG~HLPDiTvITPvF~~~~~~vF~vAsRgHhaDiGGI~PGSmPp~Sk~i~eEGa 870 (1247)
T KOG1939|consen 791 TVKWQLKHWGEKLKPGDVLLTNHPSAGGSHLPDITVITPVFDKGHEPVFFVASRGHHADIGGITPGSMPPNSKAIYEEGA 870 (1247)
T ss_pred HHHHHHHHhccCCCCCcEEEecCCCCCCccCCCceEEeeeecCCCcEEEEEecccccccccCcCCCCCCCcchhhhhccc
Confidence 99999999999999999999999999999999999999999977 99999999999999999999999999999999999
Q ss_pred ccccEEEEECCeeCHHHHHHHHcCCCCCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 000831 879 AIKAFKLVEKGIFQEEGITKLLLDPSSEDSAHKIPGTRRLQDNLSDLRAQVAANQRGISLIKELIEQYGLKTVQAYMTYV 958 (1264)
Q Consensus 879 riPpvKl~~~G~~~~d~v~~li~~~~~~~r~~~~~n~R~P~~~~gDl~A~iaa~~~g~~Rl~eLieryG~d~v~~~~~~~ 958 (1264)
-|--.|++++|.++|+.+.+++.+.+. .+|.|+.+|.-..+..||+||||||+.|.+-+.+|+++||+++|.++|..+
T Consensus 871 aiksfkvV~~GvFqEe~ii~ll~~~~a--~~~g~sgsR~l~DNisDlkAqiaAn~kGiqlv~~Li~eYgl~~V~~yM~~I 948 (1247)
T KOG1939|consen 871 AIKSFKVVKEGVFQEERIIDLLKAPPA--KYPGCSGSRNLSDNISDLKAQIAANHKGIQLVTSLIEEYGLDVVQAYMKHI 948 (1247)
T ss_pred eeeeeeeeccccchHHHHHHHHhCCCC--CCCCCccccccccchHHHHHHHhhcccchHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999999999999999999998555 799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCcccCCCcceeEEEEEEEeeCCceEEEEEEEEecCCEEEEEccCCccccCCCcCcchHH
Q 000831 959 QLNAEEAVREMLKSVAAKVSSESAKDGERNFVTIEEEDYMDDGSVIHLKLTIDSDKGEAFFDFSGTSSEVLGNWNAPEAV 1038 (1264)
Q Consensus 959 ~d~sE~~~R~~I~~iPdG~~g~~~~~~~~~~~~y~~~~~~Dd~~~i~v~vtvt~~gd~i~vDfsGtspq~~g~iN~~~~~ 1038 (1264)
+..+|..+|++|+++-.-+... +.+++||||||.+|+++|+|+.+.++..|||+||+|++.|.+|+|.+.
T Consensus 949 Q~nAe~aVR~mLk~v~~~~~~~----------~l~~eD~mDDGs~I~L~v~Id~E~g~aifdFtGT~pevygn~NAP~Av 1018 (1247)
T KOG1939|consen 949 QNNAELAVREMLKKVGRRVLEK----------TLSAEDFMDDGSPIKLKVTIDPEKGEAIFDFTGTGPEVYGNCNAPEAV 1018 (1247)
T ss_pred HHhHHHHHHHHHHHHHHHhccC----------ccchhhccCCCCeEEEEEEEcccCCcEEEeecCCCcccccCcCchHHh
Confidence 9999999999999988753332 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCcccccceEEEcCCCccccCCCCCcccccchhhhHHHHHHHHHHHHhhccCCCCcceeeee
Q 000831 1039 TAAAVIYCLRCLVDVEIPLNQGCLAPVKIHIPPGSFLSPSEKAAVVGGNVLTSQRITDVVLTAFQACACSQGCMNNLTFG 1118 (1264)
Q Consensus 1039 t~aa~~~~~~~~~~pdiP~N~G~~rpi~v~~PeGsilnp~~Pa~v~~~~~~~~~~i~~~v~~Al~~~a~~~g~~~~~~~g 1118 (1264)
|.||+.|+++|++..|||.|+||+.||+|++|+||+|+|.+-|||+++++.|+||+.|++++||+.||+++||++|++||
T Consensus 1019 T~SAviYCLRclv~~dIPLNqGCL~Pi~i~IP~~s~LsPse~AaVVgGNVlTSQRitDvilkaF~~cAaSQGcmNNltfG 1098 (1247)
T KOG1939|consen 1019 TYSAVIYCLRCLVNEDIPLNQGCLAPIQIKIPAGSFLSPSETAAVVGGNVLTSQRITDVILKAFQICAASQGCMNNLTFG 1098 (1247)
T ss_pred HHHHHHHHHHHHhcCCcCcccccccceEEeeCCCcccCcccccceeccceeehhhhHHHHHHHHHHHhhccccccCeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cceeEE-EEeecccCCCCCCCCCCCCccCcCCCCCCCChhhhcccccEEEEEeeeecCCCCCCcccCcCceEEEEEEeec
Q 000831 1119 DSTFGY-YETIGGGSGAGPTWDGTSGVQCHMTNTRMTDPEIFEQRYPVFLHKFGLREKSGGAGLHRGGDGLVREIEFRRP 1197 (1264)
Q Consensus 1119 ~~~f~~-~~~~~GG~GA~~~~DG~~~~~~~~~~~~~~~vE~~E~~~Pl~v~~~~l~~DSgGaG~~RGG~G~~~~~~~~~~ 1197 (1264)
.+.|.+ ||+++||.||.++|+|.+|+++||+|+|+++.|++|.+||++..+|.||.+|||.|+|.||.|++|++++..+
T Consensus 1099 ~~~~~~yYETI~GGaGAg~gwnGtsgVhthMTNTRiTDpEi~E~RyPviLrrf~lRe~SGG~Gk~~GGdGvvRd~eFrk~ 1178 (1247)
T KOG1939|consen 1099 DEGCGYYYETIAGGAGAGPGWNGTSGVHTHMTNTRITDPEILERRYPVILRRFCLREGSGGKGKYHGGDGVVRDLEFRKP 1178 (1247)
T ss_pred cCCcCcceeeecccCCCCCCCCCCCceeecccccccCCHHHHhhhhhHhhhhheeccCCCCccceeCCCceEEEEEeecc
Confidence 765554 7999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCcccCCCccCCCCCCCCCceEEEccCCeEEeeCCcceEEcCCCCEEEEecCCCcccCC
Q 000831 1198 VVVSILSERRVHAPRGLKGGKDGARGANYLITKDKRKVYLGGKNTVQVQPGEILQILTPAGGGWGS 1263 (1264)
Q Consensus 1198 ~~~~~~~~r~~~~p~Gl~GG~~G~~~~~~~~~~~g~~~~~~~~~~~~l~~Gd~~~~~t~GGGGyGd 1263 (1264)
+++++.++|..+.|+|+.||++|..|.+.+++.++....+++|..+.+++||++.|.||||||||.
T Consensus 1179 vt~SiLsERR~~~PyGl~GGqdg~~G~Nl~i~~~~~~inlggKnt~~~q~GD~~~i~TPGGGGyG~ 1244 (1247)
T KOG1939|consen 1179 VTLSILSERRAFQPYGLNGGQDGQRGLNLWIRRDGRAINLGGKNTVHVQAGDILVIETPGGGGYGA 1244 (1247)
T ss_pred eEEEeeecccccCCcccCCCCCcccccceEEEcCCceEEecCcceEEecCCCEEEEECCCCCCCCC
Confidence 999999999999999999999999999999998999999999999999999999999999999996
No 3
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.7e-136 Score=1248.89 Aligned_cols=662 Identities=35% Similarity=0.532 Sum_probs=605.2
Q ss_pred CcEEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEEehhHH
Q 000831 7 EKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRMGTTVA 86 (1264)
Q Consensus 7 ~~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~i~~GTT~~ 86 (1264)
++|+||||+||||||+|++++++.++.+.|++|| |.++..++.++++.++..+ ..++|+.++||||++
T Consensus 1 ~~~~iGID~GGTfTDaV~~~~~~g~~~~~K~lTt-P~~~~~~~~~~~~~~~~~~-----------~~~~i~~v~~gTT~a 68 (674)
T COG0145 1 MMLRIGIDVGGTFTDAVLLDEDGGVLATIKVLTT-PDLPSGIVNAGIRLALELL-----------EGSEVDLVVHGTTLA 68 (674)
T ss_pred CceEEEEEcCCCcEeEEEEeCCCCEEEEEEccCC-CCchhhHHHHHHHHHhhcc-----------ccccccEEEEeccHH
Confidence 3689999999999999999865434899999998 9998888888777776542 115799999999999
Q ss_pred hhHhhhcCCCcEEEEEecCchhhhhhccCCCCCCccccccCCCCccee--EEEeeeeeecccccccccccceeecccCce
Q 000831 87 TNALLERKGERIALCVTRGFKDLLQIGNQARPQIFDLTVSTPSNLYEE--VIEVDERVELVLENEKENQESLVKGVSGEL 164 (1264)
Q Consensus 87 tNAller~g~~vgli~t~GfrDvl~i~r~~~~~~~~~~~~~P~~l~~~--~~~v~eRi~~~g~~~~~~~~~~~~Gg~~~~ 164 (1264)
|||||||||.|+|||||+||+|+|+||||.||++|++...||.+|+++ ++++.||++.+|
T Consensus 69 TNallerkG~~~alittkGf~dli~IG~~~rp~~~~~~~~~P~~l~~r~~~~g~~er~~~eG------------------ 130 (674)
T COG0145 69 TNALLERKGLRTALITTKGFVDLIEIGRQNRPRLYPLYIKKPKPLVPRVRVFGGHERVGAEG------------------ 130 (674)
T ss_pred HHHHHhccCcceeeeeccccceEEEEcCccccccccccccCccccccceeeccccceeCCCc------------------
Confidence 999999999999999999999999999999999999999999999998 779999998865
Q ss_pred eEEecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCcHHHHHHHHHHHhcC-CccEEEeecccCcCCcccchhhhhhhh
Q 000831 165 VRVVKPVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGLG-FRHVSLSSALTPMVRAVPRGLTASVDA 243 (1264)
Q Consensus 165 G~v~~plde~~v~~~~~~l~~~gv~avaV~~l~S~~np~hE~~v~ei~~~~~-~~~VtlS~ei~p~~~e~eR~~ttvlNA 243 (1264)
++++|||+++|++++++++++|+++||||++|||+||+||++++||+++.. ..+|++|||++|++|||||++||+|||
T Consensus 131 -~v~~~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~~~i~V~~shev~p~~~~~eR~~TavlnA 209 (674)
T COG0145 131 -EVIKPLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIGPDIPVSLSHEVSPEIGEYERANTAVLNA 209 (674)
T ss_pred -cccCcCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhcCCceEEechhcchhcCcccchhhheeee
Confidence 999999999999999999999999999999999999999999999999972 338999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHhhcCCCceEEEEEcCCCcccccccc--ccceecccchhHHHHHHHhccccCCCCCEEEEecCC
Q 000831 244 YLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFS--GHKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGG 321 (1264)
Q Consensus 244 yl~p~~~~~l~~l~~~l~~~~~~~~l~i~~sdGG~~s~~~~~--pv~ti~SGPaagv~Ga~~l~~~~~g~~~~I~~DmGG 321 (1264)
||.|++++|++++++.|++.++++++|+||||||++++++++ |++||+||||||++||++|+-...| ++|++||||
T Consensus 210 ~L~pi~~~yl~~v~~~l~~~g~~~~l~~m~sdGgl~~~~~a~~~pv~tI~SGPAagvvGAa~ltg~~~g--~~i~~DmGG 287 (674)
T COG0145 210 YLSPILRRYLEAVKDALKERGIKARLMVMQSDGGLVSAEEAREKPVETILSGPAAGVVGAAYLTGLKAG--NAIVFDMGG 287 (674)
T ss_pred eehHHHHHHHHHHHHHHHhcCCCceeEEEecCCccccHHHHhcCCeeeEeeccHHHHHHHHHhcccccC--CEEEEEcCC
Confidence 999999999999999999999999999999999999999985 9999999999999999999412233 599999999
Q ss_pred CceEeeeec-cccceeeeeEEc-cEEEeecceeeEEEeccCCcEEEEe-CCeEEEcccccccCCCcceeccCC-CccHhH
Q 000831 322 TSTDVSRYA-GSYEQVLETQIA-GAIIQAPQLDINTVAAGGGSNLMFQ-LGAFRVGPESVGAHPGPVCYRKGG-DLAVTD 397 (1264)
Q Consensus 322 TStDv~li~-G~~~~~~~~~i~-g~~~~~p~~dv~sIGaGGGSi~~v~-~g~l~VGP~SaGa~PGpacy~~GG-~~TvTD 397 (1264)
||||+++|. |+|+.+.+.++. |||+++||+||+|||+|||||+|+| .|.+||||+||||+|||+||++|| +||+||
T Consensus 288 TStDva~i~~G~pe~~~e~~v~Gg~~t~vp~i~i~tvaaGGgSiv~~d~~g~~rVgP~saga~pgp~cy~~gg~~~titD 367 (674)
T COG0145 288 TSTDVALIIDGEPEISSETEVAGGYPTRVPMVDIRTVAAGGGSIVWVDEGGPLRVGPLSAGADPGPACYGRGGTEPTITD 367 (674)
T ss_pred cceeeeeeecCcEEeeccceEEcceeeEEeeeeEEEEcCCCceEEEEcCCCcceeccccccCCCCCchhhcCCCCCcccc
Confidence 999999996 999999988887 5999999999999999999999998 899999999999999999999999 799999
Q ss_pred HHHHcCccCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHH
Q 000831 398 ANLILGFVIPDYFPSIFGPNEDQPLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANETMCRPIRQLT 477 (1264)
Q Consensus 398 A~l~lG~l~p~~fl~~~g~~g~~~ld~~~a~~a~~~la~~lg~~~~~~~~~~~gl~~eeaA~~i~~~a~~~m~~~i~~~~ 477 (1264)
||++||+|.|..++ |++++||++.++++|+++++.++ +.+++|+|.+++.+++.+|+++||.++
T Consensus 368 an~~lGrl~p~~~~-----G~~~~ld~~~~~~~~~~~~~~i~-----------~~~~ee~a~~~i~ia~~~m~~air~~~ 431 (674)
T COG0145 368 ANLVLGRLQPPVLL-----GGDLKLDVELAREAFSELEADIG-----------GLIGEEVASGFIRLANLEMAGAIRKVT 431 (674)
T ss_pred hhhhccccCchhhc-----CCcccccHHHHHHHHHHHHHHhc-----------cCCccchHHHHHHHHHHhhhhhhhhhh
Confidence 99999999996665 47799999999999999998886 368999999999999999999999999
Q ss_pred HHhCCCCCCceEEEEcCchHHHHHHHHHHcCCCEEEECCCCCccccccccccceEEEEEEEEeecCCCCCHHHHHHHHHH
Q 000831 478 EMKGHETRNHALACFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGLADVVEEAQEPYSAVYGPESVLEVSRREGI 557 (1264)
Q Consensus 478 ~~~G~dpr~~~lv~~GGag~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1264)
++||||||+|+|++|||+||+|+|.+|++||+++|++|++++++||+|+++||+++++.+++...+++...+.+...|+.
T Consensus 432 ~~rg~d~~~~~l~~fggag~~Ha~~~a~~lg~~~v~i~~~~~~~sA~G~~lad~~~~~~~~v~~~l~~~~~~li~~~~~~ 511 (674)
T COG0145 432 VERGYDPRDFTLIGFGGAGPLHALGVAEELGIKRVIIPPYPGVFSAYGMLLADLRSELSKSVKQKLAEAALELIAFVFEM 511 (674)
T ss_pred hhcccCccceEEEecCCchHHHHHHHHHhcCCcceeeccchhhhhhccchhhhhHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888777889999999
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEEEeeeecCeeEEEEEecccccCCCcccHHHHHHHHHHHHhccccCCCcEEEEEEEEE
Q 000831 558 LSKQVKQKLQEQGFREESITTETYLNLRYEGTDTAIMVKKRIAEDGSGCGYAVDFEKLFQQEYGFKLQNRNILVCDVRVR 637 (1264)
Q Consensus 558 l~~~a~~~l~~~G~~~~~i~~~~~~d~rY~gQ~~~i~v~~~~~~~~~~~~l~~~F~~~h~~~yg~~~~~~~vei~~~rv~ 637 (1264)
|++++.+++..+|++++++.++..++|||.||.....++.+.. .+ +++..+||+.|++.|||..++.+++++++++.
T Consensus 512 l~~~~i~~l~~~~~~~~~~~~~~~~~vry~G~~~~~~~~~~~~--~~-~~~~~~f~~~h~~~~g~a~~~~~~~v~~~~~~ 588 (674)
T COG0145 512 LEEEAIEELLASGFSEEDIRVVRVAPVRYVGGGQDAELEVLKS--DS-EEIRAEFEEPHEARYGNAVGARPGEVVAIRVE 588 (674)
T ss_pred HHHHHHHHHHhcCCcccceeeEeeccEEEEcCccceEEecccc--ch-hhHHhHhhhhhhhhhcccccCceEEEEEEEEE
Confidence 9999999999999999999999999999999665555544321 11 67999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCC-ccceEEEEe-CcEEEeeEEEcCCCCCCCeeecceEEEeCCeEEEECCCcEEEEecCCc
Q 000831 638 GIGVTNILKPQAIEPTSGTPK-VEGHYKVFF-NGWHDAPLYKLENLGYGHVMPGPAIIMNGNSTVIVEPNCKAVITKYGN 715 (1264)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~-~~~~r~v~~-~~~~~~~Vy~r~~L~~g~~i~GPaiIe~~~tT~vv~pg~~~~vd~~g~ 715 (1264)
+++...+|..+.........+ ....|++|+ +.|++++||+|++|++|+.++||||||++++|++|+|||++++|.+++
T Consensus 589 ~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~e~~v~~~~~l~~g~~~~gpaiie~~~~t~vv~pg~~~~v~~~~~ 668 (674)
T COG0145 589 AIGPRDKPVLSPLEEIERVFAPFLGYREAYFAGLWAETPVYEREKLAGGDEVEGPAIIEEEDSTIVVPPGWAARVDVKGV 668 (674)
T ss_pred EEecccccccccccccccccccchhhHHHHhccchhcchHHHHhhcCCCCccceeEEEEecCcccccCCCceEEEEEEEE
Confidence 999887765443322211112 467788887 669999999999999999999999999999999999999999999999
Q ss_pred EEEEE
Q 000831 716 IKIEI 720 (1264)
Q Consensus 716 ~~i~~ 720 (1264)
+++++
T Consensus 669 ~v~~~ 673 (674)
T COG0145 669 LVLER 673 (674)
T ss_pred EEEec
Confidence 99875
No 4
>COG0146 HyuB N-methylhydantoinase B/acetone carboxylase, alpha subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.6e-133 Score=1174.66 Aligned_cols=504 Identities=54% Similarity=0.893 Sum_probs=492.4
Q ss_pred CChhhHHHHHhHHHHHHHHHHHHHHHhhcccchhccccccceeeCCCCCeeeecCCCceeeccchHHHHHHHHHccC--C
Q 000831 734 ADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVPVHLGAMSSTVRWQLKYWRH--N 811 (1264)
Q Consensus 734 ~Dpit~eIi~~~L~ai~~Em~~~l~RtA~Spii~e~~D~s~aI~d~~G~lva~~~~ip~h~gs~~~~v~~il~~~~~--~ 811 (1264)
+|||++||++|+|++|||||+.+|+|||+||+|||.+||||||||++|++|||++|||+|+|||..+|+++++++.+ +
T Consensus 2 ~Dpi~lEv~~n~~~~iaeeMg~~l~rtA~SpnIkErlD~scAI~d~~G~lVA~a~hipVHlGsM~~~vk~~i~~~~~~~~ 81 (563)
T COG0146 2 MDPITLEVFNNAFMAIAEEMGVTLQRTAFSPNIKERLDFSCAIFDAEGNLVAQAPHIPVHLGSMSVSVKAMIRNNKENPD 81 (563)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecceeEEEECCCCCeeccCCCCeEEecccHHHHHHHHHhhccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999876 9
Q ss_pred CCCCcEEEecCCCCCCCCCCCeEEEEeeeeCCeEEEEEeccccccccCCCCCCCCCCCCccccccCcccccEEEEECCee
Q 000831 812 LNEGDVLVSNHPCAGGSHLPDITVITPVFDNGKLVFFVASRGHHAEIGGITPGSMPPFSKSIWEEGAAIKAFKLVEKGIF 891 (1264)
Q Consensus 812 l~pGDv~i~NDPy~Gg~Hl~Dv~~~~PVF~~Gelv~~~~~~~H~~DiGG~~PGs~~~~Atei~qEGlriPpvKl~~~G~~ 891 (1264)
|+|||||++||||.|||||||+++++||||+|+||||+++++||+||||.+||||++.||+|||||++|||+||+++|++
T Consensus 82 l~pGDV~~~NdPy~GgTHLpDvt~~~PvF~~~~li~~va~r~H~~DiGG~~PGS~~~~a~ei~~EGl~i~p~Kl~~~G~~ 161 (563)
T COG0146 82 LEPGDVFITNDPYIGGTHLPDVTLVTPVFHDGKLIGYVANRGHHADIGGITPGSMSPGATEIFQEGLRIPPVKLVKNGEF 161 (563)
T ss_pred CCCCCEEEecCcccCCccCCceeEEeeeEeCCeEEEEEEeccceeccCCCCCCCCCccceeeecCceeecceeeeeCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCCCCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000831 892 QEEGITKLLLDPSSEDSAHKIPGTRRLQDNLSDLRAQVAANQRGISLIKELIEQYGLKTVQAYMTYVQLNAEEAVREMLK 971 (1264)
Q Consensus 892 ~~d~v~~li~~~~~~~r~~~~~n~R~P~~~~gDl~A~iaa~~~g~~Rl~eLieryG~d~v~~~~~~~~d~sE~~~R~~I~ 971 (1264)
|+| ++.++++ |+|+|+++++||+||||||+.|++||.+|++|||.|+|.++|+++++++|+.+|++|+
T Consensus 162 ~ed-~l~~~~~-----------N~r~P~~~igDlkAqIAA~~~g~~~v~~li~~yG~~~v~~~m~~~~~~ae~~~r~~I~ 229 (563)
T COG0146 162 RED-ILRILLR-----------NVRTPDYNIGDLKAQIAANLKGRRRVRELIDEYGLDTVEEAMKEVIEYAERAVRAVIR 229 (563)
T ss_pred CHH-HHHHHHh-----------cCCCcchhchhHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 5677776 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCcccCCCcceeEEEEEEEeeCC---ceEEEEEEEEecCCEEEEEccCCccccCCCcCcchHHHHHHHHHHHh
Q 000831 972 SVAAKVSSESAKDGERNFVTIEEEDYMDDG---SVIHLKLTIDSDKGEAFFDFSGTSSEVLGNWNAPEAVTAAAVIYCLR 1048 (1264)
Q Consensus 972 ~iPdG~~g~~~~~~~~~~~~y~~~~~~Dd~---~~i~v~vtvt~~gd~i~vDfsGtspq~~g~iN~~~~~t~aa~~~~~~ 1048 (1264)
+||+| +|+++||+|+| .+++++++|++++++++|||+|||||+.+++||+++.|.|+++|+++
T Consensus 230 ~l~~g--------------~~~~~dy~d~g~~~~~i~v~v~i~~~g~~~~vDFtGTspq~~~~~Nap~~vt~sav~~~~r 295 (563)
T COG0146 230 KLPDG--------------KYEFEDYLDDGDTLQPIPVKVTITVEGREAIVDFTGTSPQVYGPFNAPLAVTLSAVLYALR 295 (563)
T ss_pred hCCCC--------------ceeEEEEEcCCCccceEEEEEEEEecCCEEEEEecCCCcccCCCcCCcchhhhhhHHHHHH
Confidence 99998 99999999987 69999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCcccccceEEEcCCCccccCCCCCcccccchhhhHHHHHHHHHHHHhhc------cCCCCcceeeeec---
Q 000831 1049 CLVDVEIPLNQGCLAPVKIHIPPGSFLSPSEKAAVVGGNVLTSQRITDVVLTAFQACA------CSQGCMNNLTFGD--- 1119 (1264)
Q Consensus 1049 ~~~~pdiP~N~G~~rpi~v~~PeGsilnp~~Pa~v~~~~~~~~~~i~~~v~~Al~~~a------~~~g~~~~~~~g~--- 1119 (1264)
++++||+|.|+|||||++|++|+||||||++||||++++++|+|++.|++|+||++++ +++|++++++||.
T Consensus 296 ~~v~~diP~N~G~~~pi~i~~P~Gt~lnP~~PA~V~~gnvetSqri~d~i~~Al~~~~p~~v~aas~G~mnn~~~Gg~~~ 375 (563)
T COG0146 296 SLLDPDIPLNAGCLRPIEIIAPEGTWLNPRYPAAVVGGNVETSQRIADVIFGALAQAAPGRVPAASQGTMNNVTFGGINQ 375 (563)
T ss_pred HHhCCCCCcCcccccceEEEcCCCceeCCCCCccccccceehhHHHHHHHHHHHHHhccccCcccCcCceeEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999998654 4999999999976
Q ss_pred --ceeEEEEeecccCCCCCCCCCCCCccCcCCCCCCCChhhhcccccEEEEEeeeecCCCCCCcccCcCceEEEEEEeec
Q 000831 1120 --STFGYYETIGGGSGAGPTWDGTSGVQCHMTNTRMTDPEIFEQRYPVFLHKFGLREKSGGAGLHRGGDGLVREIEFRRP 1197 (1264)
Q Consensus 1120 --~~f~~~~~~~GG~GA~~~~DG~~~~~~~~~~~~~~~vE~~E~~~Pl~v~~~~l~~DSgGaG~~RGG~G~~~~~~~~~~ 1197 (1264)
+.|.+||+++||+||++++||.|+++.+|+|++|+|+|++|++|||++++|.|++||||+||||||+|++|.|+++.+
T Consensus 376 ~~~~~~~yEti~gG~GA~~~~DG~~~v~~~mtnt~~tpiEi~E~~yPvl~~~~~lr~~SGG~GkyrGG~G~vr~~~~l~~ 455 (563)
T COG0146 376 KGRGFAYYETIGGGSGAGPGKDGLDGVHTHMTNTRNTPIEILERRYPVLLEAFSLREGSGGAGKYRGGDGIVRAFRVLEP 455 (563)
T ss_pred CCceeEEEecccCcCCCCCCCCCCcceeecccccCCCCHHHHhhhCceEEEEEeeccCCCCCcccCCCcceEEEEEeccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCcccCCCccCCCCCCCCCceEEEccCCeEEeeCCcceEEcCCCCEEEEecCCCcccCC
Q 000831 1198 VVVSILSERRVHAPRGLKGGKDGARGANYLITKDKRKVYLGGKNTVQVQPGEILQILTPAGGGWGS 1263 (1264)
Q Consensus 1198 ~~~~~~~~r~~~~p~Gl~GG~~G~~~~~~~~~~~g~~~~~~~~~~~~l~~Gd~~~~~t~GGGGyGd 1263 (1264)
+.+++.++|.+++|||++||++|.++..++.+.+++.+.++++...+|++||+|++.|+|||||||
T Consensus 456 ~~~si~s~r~~~~P~Gl~GG~~g~~g~~~v~~~~g~~~~l~~~~t~~l~~GD~~~i~tpGGGGyG~ 521 (563)
T COG0146 456 ATLTILSERRRFPPWGLNGGKPGEPGENVVARKDGDVERLGSKDTTELEPGDVVIIETPGGGGYGD 521 (563)
T ss_pred ceEEEEeCceecCCccccCCccCCCcceEEEeCCCCeEecCceeeeEcCCCCEEEEECCCCCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998
No 5
>PF02538 Hydantoinase_B: Hydantoinase B/oxoprolinase; InterPro: IPR003692 An appreciable fraction of the sulphur present in mammals occurs in the form of glutathione. The synthesis of glutathione and its utilization take place by the reactions of the gamma-glutamyl cycle, which include those catalysed by gamma-glutamylcysteine and glutathione synthetases, gamma-glutamyl transpeptidase, cysteinylglycinase, gamma-glutamyl cyclotransferease, and 5-oxoprolinase []. This family includes N-methylhydantoinase B which converts hydantoin to N-carbamyl-amino acids, and 5-oxoprolinase 3.5.2.9 from EC which catalyses the formation of L-glutamate from 5-oxo-L-proline. These enzymes are part of the oxoprolinase family and are related to hydantoinase_A.; GO: 0003824 catalytic activity
Probab=100.00 E-value=6.4e-128 Score=1167.19 Aligned_cols=506 Identities=42% Similarity=0.719 Sum_probs=484.0
Q ss_pred CChhhHHHHHhHHHHHHHHHHHHHHHhhcccchhccccccceeeCCCCCeeeecCCCceeeccchHHHHHHHHHccCCCC
Q 000831 734 ADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVPVHLGAMSSTVRWQLKYWRHNLN 813 (1264)
Q Consensus 734 ~Dpit~eIi~~~L~ai~~Em~~~l~RtA~Spii~e~~D~s~aI~d~~G~lva~~~~ip~h~gs~~~~v~~il~~~~~~l~ 813 (1264)
+||||+|||||+|.+|++||+.+|+|||+||+|+|++||+|+|||++|++++|+.++|+|+++|+.+||+++++|.++|+
T Consensus 1 vDpit~eii~~~l~~i~~em~~~l~Rta~Spii~e~~D~~~aI~d~~G~~va~~~~ip~h~~~~~~~v~~~~~~~~~~i~ 80 (527)
T PF02538_consen 1 VDPITLEIIRNRLQSIAEEMGAALMRTAFSPIIREAGDFSCAIFDADGRLVAQSEGIPVHVGSMPFAVKAILEYFEDGIR 80 (527)
T ss_pred CCcEeHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcccceeeECCCCCeEEcCCCCcEEEechHHHHHHHHHhccCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred CCcEEEecCCCCCCCCCCCeEEEEeeeeCCeEEEEEeccccccccCCCCCCCCCCCCccccccCcccccEEEEECCeeCH
Q 000831 814 EGDVLVSNHPCAGGSHLPDITVITPVFDNGKLVFFVASRGHHAEIGGITPGSMPPFSKSIWEEGAAIKAFKLVEKGIFQE 893 (1264)
Q Consensus 814 pGDv~i~NDPy~Gg~Hl~Dv~~~~PVF~~Gelv~~~~~~~H~~DiGG~~PGs~~~~Atei~qEGlriPpvKl~~~G~~~~ 893 (1264)
||||||+||||.||+|++|+++++||||+||||+|+++++||+|+||++||||+++|||||||||+|||+||+++|++|+
T Consensus 81 ~GDv~i~NDPy~Gg~H~~Dv~~~~PVF~~Gelv~~~~~~~H~~DiGG~~pGs~~~~a~~i~qEGl~iPpvKl~~~G~~~~ 160 (527)
T PF02538_consen 81 PGDVFITNDPYIGGTHLPDVTVVMPVFHDGELVGWAASRAHQSDIGGMVPGSMSPDATDIFQEGLRIPPVKLYERGVLNE 160 (527)
T ss_pred CCCEEEEcCcccCCccCCccEEEEeEEeCCceEEEEeeeeeeeccCCCCCCCCCCCCCChhhCCCeeeeEEEEECCEeCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHcCCCCCCCCCCCCCc---cCcccchhhHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Q 000831 894 EGITK-LLLDPSSEDSAHKIPGT---RRLQDNLSDLRAQVAANQRGISLIKELIEQYGLKTVQAYMTYVQLNAEEAVREM 969 (1264)
Q Consensus 894 d~v~~-li~~~~~~~r~~~~~n~---R~P~~~~gDl~A~iaa~~~g~~Rl~eLieryG~d~v~~~~~~~~d~sE~~~R~~ 969 (1264)
| +++ ++++ |+ |+|+++++||+||||||++|++||.|||+|||.|+|++++++++||+|+++|++
T Consensus 161 d-v~~~~i~~-----------n~~~sR~P~~~~gDl~A~iaa~~~g~~rl~el~~~yG~d~v~~~~~~~~~~sE~~~r~~ 228 (527)
T PF02538_consen 161 D-VLDRIILR-----------NVFNSRVPDQVLGDLRAQIAACRIGARRLLELIERYGADTVRAAMDEILDYSERRMRAA 228 (527)
T ss_pred H-HHHHHHHh-----------CCCCCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 567 7765 45 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCcccCCCcceeEEEEEEEeeC--CceEEEEEEEEecCCEEEEEccCCccccCCCcCcchHHHHHHHHHHH
Q 000831 970 LKSVAAKVSSESAKDGERNFVTIEEEDYMDD--GSVIHLKLTIDSDKGEAFFDFSGTSSEVLGNWNAPEAVTAAAVIYCL 1047 (1264)
Q Consensus 970 I~~iPdG~~g~~~~~~~~~~~~y~~~~~~Dd--~~~i~v~vtvt~~gd~i~vDfsGtspq~~g~iN~~~~~t~aa~~~~~ 1047 (1264)
|++||| .+| +|+++++.|. +.+++|+|+|||+||+++|||+|||||+++++||++++|.+++++++
T Consensus 229 I~~lpd-~~g-----------~~~~~~~~~~~~~~~i~i~v~vtv~gd~l~~DfsGt~pq~~~~iN~~~~~t~~~~~~~~ 296 (527)
T PF02538_consen 229 IAELPD-GYG-----------TYEFEDYDDGDDGEPIKIKVTVTVKGDELTVDFSGTSPQVPGPINCPLASTRAAVYYAL 296 (527)
T ss_pred HHhcCc-cCC-----------ceEeeeecCCCCCcEEEEEEEEEECCCEEEEEcCCCCcccCCCcccCHHHHHHHHHHHH
Confidence 999999 233 8999888321 45899999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCcccccceEEEcCCCccccCCCCCcccccchhhhHHHHHHHHHHHHhhccCCCCcceeeeec------ce
Q 000831 1048 RCLVDVEIPLNQGCLAPVKIHIPPGSFLSPSEKAAVVGGNVLTSQRITDVVLTAFQACACSQGCMNNLTFGD------ST 1121 (1264)
Q Consensus 1048 ~~~~~pdiP~N~G~~rpi~v~~PeGsilnp~~Pa~v~~~~~~~~~~i~~~v~~Al~~~a~~~g~~~~~~~g~------~~ 1121 (1264)
+++++||+|+|+|+||||+|++||||||||++|||++++++.+++++++++++||+..+++.|++++++++. ++
T Consensus 297 ~~~l~pdip~N~G~~rpi~v~~PeGti~np~~PApv~~~~~~~~~~v~~av~~al~~~a~~~G~~~~~~~~~~~~~~G~~ 376 (527)
T PF02538_consen 297 KCLLDPDIPVNEGAFRPIEVIAPEGTIVNPRFPAPVSGGTVETSQRVADAVFGALAVPAASAGCANNFVFGGGGPRDGEP 376 (527)
T ss_pred HHHcCCCCCCccccccceEEEcCCCCEECCCCCCceeccchHHHHHHHHHHHHhhcccccccCCcceEEEecCCCcceee
Confidence 999999999999999999999999999999999999878888999999999999998888999988887743 57
Q ss_pred eEEEEeecccCCCCCCCCCCCCccCcCCCCCCCChhhhcccccEEEEEeeeecCCCCCCcccCcCceEEEEEEeeceEEE
Q 000831 1122 FGYYETIGGGSGAGPTWDGTSGVQCHMTNTRMTDPEIFEQRYPVFLHKFGLREKSGGAGLHRGGDGLVREIEFRRPVVVS 1201 (1264)
Q Consensus 1122 f~~~~~~~GG~GA~~~~DG~~~~~~~~~~~~~~~vE~~E~~~Pl~v~~~~l~~DSgGaG~~RGG~G~~~~~~~~~~~~~~ 1201 (1264)
|.++++..||+||++++||++++.+++++++++|+|++|++||++|++|++++||||+||||||+|++++++++.++.++
T Consensus 377 ~~~~~~~~gG~GA~~~~DG~~~~~~~~~~~~~~~vE~~E~~~P~~v~~~~l~~DSgGaG~~RGG~G~~~~~~~~~~~~~~ 456 (527)
T PF02538_consen 377 FMYFETIGGGWGARPGRDGVDAVWFPMGNTRNTPVEVLEAEYPLLVERRELRPDSGGAGRYRGGLGVVREYRVLHDATMT 456 (527)
T ss_pred EEEEEecccccCCCCccCccCeeccCccccCCCCHHHHhhhCCeEEEEEEeccCCCCCCccCCCCeEEEEEEECCCeEEE
Confidence 88999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcccCCCccCCCCCCCCCceEEEccCCeEEeeCCcceEEcCCCCEEEEecCCCcccCC
Q 000831 1202 ILSERRVHAPRGLKGGKDGARGANYLITKDKRKVYLGGKNTVQVQPGEILQILTPAGGGWGS 1263 (1264)
Q Consensus 1202 ~~~~r~~~~p~Gl~GG~~G~~~~~~~~~~~g~~~~~~~~~~~~l~~Gd~~~~~t~GGGGyGd 1263 (1264)
+++||.+++|||++||+||+++.++++++++.++.++.+...++++||+|+++|+||||||+
T Consensus 457 ~~~~r~~~~p~G~~GG~~G~~~~~~~~~~~~~~~~l~~~~~~~l~~Gd~~~~~t~GGGGyGe 518 (527)
T PF02538_consen 457 VMGDRSRFPPWGLFGGYPGAPGRAWVVRGDGEEEPLPAKGMVPLKPGDVVRIETPGGGGYGE 518 (527)
T ss_pred EEeCCcccCCcccccCcCCCCcceEEEeCCCCeEEcCCcceEEeCCCCEEEEECcCcCcCCc
Confidence 99999999999999999999999999999998888888888999999999999999999993
No 6
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=100.00 E-value=1.3e-65 Score=582.09 Aligned_cols=283 Identities=40% Similarity=0.642 Sum_probs=172.9
Q ss_pred chhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceEEEEEcCCCcccccccc--ccceecccchhHHHHHHH-hccccCCC
Q 000831 235 RGLTASVDAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFS--GHKAVLSGPAGGVVGYSQ-TLFGLETE 311 (1264)
Q Consensus 235 R~~ttvlNAyl~p~~~~~l~~l~~~l~~~~~~~~l~i~~sdGG~~s~~~~~--pv~ti~SGPaagv~Ga~~-l~~~~~g~ 311 (1264)
|++||+|||||+|++++|++++++.|++.++++|++|||||||+|++++++ |++|++||||||++|+++ +. +.
T Consensus 1 R~~ta~lnA~l~p~~~~~~~~l~~~l~~~g~~~~~~i~~~dGgl~~~~~a~~~Pv~ti~SGPaas~~ga~~~~~----g~ 76 (290)
T PF01968_consen 1 RTNTAVLNAYLKPVMRRYLEGLEDALRERGIAAPLFIMKSDGGLMSAEEARRRPVETILSGPAASVIGAAARLT----GL 76 (290)
T ss_dssp ---EEEES---S--SS-CCHTHHHHHHHHHHHT-EEEE-TTSSEEEHHHHHHSGGCTB--SSHHHHHHHHH--H----T-
T ss_pred CccEEeEhhehHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCcCcHHHHHHhHHHHhhcCHHHhHhhhhhhcC----CC
Confidence 899999999999999999999999999988899999999999999999974 999999999999999999 44 78
Q ss_pred CCEEEEecCCCceEeeeec-cccceeeeeEE-ccEEEeecceeeEEEeccCCcEEEEe-CCeEEEcccccccCCCcceec
Q 000831 312 KPLIGFDMGGTSTDVSRYA-GSYEQVLETQI-AGAIIQAPQLDINTVAAGGGSNLMFQ-LGAFRVGPESVGAHPGPVCYR 388 (1264)
Q Consensus 312 ~~~I~~DmGGTStDv~li~-G~~~~~~~~~i-~g~~~~~p~~dv~sIGaGGGSi~~v~-~g~l~VGP~SaGa~PGpacy~ 388 (1264)
+|+|++|||||||||++|. |+|.++.+..+ +|+++++|++||+|||+|||||+|.+ +|.++|||+|+|+.|||+||+
T Consensus 77 ~~~i~vDmGGTTtDi~~i~~G~p~~~~~~~~i~g~~t~~~~~~v~sig~GGgS~~~~~~~g~~~vgp~sag~~pg~~~~~ 156 (290)
T PF01968_consen 77 ENAIVVDMGGTTTDIALIKDGRPEISSEGAIIGGYPTDVPMLDVRSIGAGGGSIVWVDEGGRLRVGPESAGAAPGPACYG 156 (290)
T ss_dssp SSEEEEEE-SS-EEEEEEETTEE----------S-SSHHHHHTTTSEE---SSS-GGGG-SEEEETTEEEE---SS----
T ss_pred CCEEEEeCCCCEEEEEEEECCeeeccccccccCCceeeccchhheeeeeecceEEEEeCCCceEEecccCCcCCCccccc
Confidence 9999999999999999996 99998887777 99999999999999999999999775 799999999999999999999
Q ss_pred cCC-CccHhHHHHHcCccCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCCCCCCCHHHHHHHHHHHHHH
Q 000831 389 KGG-DLAVTDANLILGFVIPDYFPSIFGPNEDQPLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANE 467 (1264)
Q Consensus 389 ~GG-~~TvTDA~l~lG~l~p~~fl~~~g~~g~~~ld~~~a~~a~~~la~~lg~~~~~~~~~~~gl~~eeaA~~i~~~a~~ 467 (1264)
+|| .||+|||+++||+++|++|+. +++|+++||.++|++++++++++++ ++++|+|+++++++++
T Consensus 157 ~Gg~~~T~TDa~~vlG~l~~~~~~~--t~~G~~~l~~~~a~~a~~~la~~lg------------~~~~~~A~~i~~~~~~ 222 (290)
T PF01968_consen 157 FGGTFPTVTDANLVLGRLDPDDFLC--TPGGRMKLDREAARRALERLADPLG------------LSVEEAAEGIVRIANE 222 (290)
T ss_dssp ------BHHHHHHHTTSS-GGG--S---TTS---SHHHHHHHHHHTTT--TT------------TSHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHhccCCcccccC--CCCCCcCCCHHHHHHHHHHHHHHHC------------cCHHHHHHHHHHHHHH
Confidence 999 699999999999999999984 6689999999999999988999987 8899999999999999
Q ss_pred HhhHHHHHHHHHhCCCCCCceEEEEcCchHHHHHHHHHHcCCCEEEECCCCCccccccccccceEEEE
Q 000831 468 TMCRPIRQLTEMKGHETRNHALACFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGLADVVEEA 535 (1264)
Q Consensus 468 ~m~~~i~~~~~~~G~dpr~~~lv~~GGag~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ad~~~~~ 535 (1264)
+|+++|++++.++|+||++|.|++|||+|++|++.+|++||+++|++|++++|+||+|+++||+++++
T Consensus 223 ~m~~~i~~~~~~~g~~~~~~~lv~~GG~g~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a~v~~~~ 290 (290)
T PF01968_consen 223 NMADAIREVSVERGYDPRDFPLVAFGGAGPLHAPELAEELGIPRVVPPHYAGVANAIGAAVADVRHDV 290 (290)
T ss_dssp HHHHHHHHHHHHHT--EEEE------------------------------------------------
T ss_pred HHHHHHHHHHHhhCCCccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999873
No 7
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=100.00 E-value=1.4e-42 Score=366.45 Aligned_cols=176 Identities=41% Similarity=0.598 Sum_probs=156.6
Q ss_pred EEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEEehhHHhhH
Q 000831 10 RFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRMGTTVATNA 89 (1264)
Q Consensus 10 ~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~i~~GTT~~tNA 89 (1264)
||||||||||||+|++|+++.++.+.|+||| |+|+..++.++|+++++. .++++++|+.|+||||++|||
T Consensus 1 RigIDvGGT~TD~v~~d~~~~~~~~~K~~Tt-~~d~~~gi~~al~~l~~~---------~~~~~~~i~~v~~gTT~~tNA 70 (176)
T PF05378_consen 1 RIGIDVGGTFTDAVLLDEDTGVVATAKVPTT-PDDPAEGILEALDALLEE---------SGIDPSDIDRVRHGTTVATNA 70 (176)
T ss_pred CeeEecCCCcEEEEEEeCCCCEEEEEEeCCC-CcCHHHHHHHHHHhhhcc---------cCCChhhCcEEEeccHHHHHH
Confidence 6999999999999999866234899999997 888877777777666654 346688999999999999999
Q ss_pred hhhcCCCcEEEEEecCchhhhhhccCCCCCCccccccCCCCcceeEEEeeeeeecccccccccccceeecccCceeEEec
Q 000831 90 LLERKGERIALCVTRGFKDLLQIGNQARPQIFDLTVSTPSNLYEEVIEVDERVELVLENEKENQESLVKGVSGELVRVVK 169 (1264)
Q Consensus 90 ller~g~~vgli~t~GfrDvl~i~r~~~~~~~~~~~~~P~~l~~~~~~v~eRi~~~g~~~~~~~~~~~~Gg~~~~G~v~~ 169 (1264)
|+|||++|||||+|+||+|.|+++|+++|++|++ ..|..+.+++++|.||++++| +++.
T Consensus 71 l~e~~g~~v~li~~~G~~d~l~~~~~~~~~~~~~--~~~lv~~~~~~~v~gr~~~~G-------------------~~i~ 129 (176)
T PF05378_consen 71 LLERKGARVGLITTGGFGDVLEIGRQWRPDLFDL--QDPLVPRERVFEVDGRIDADG-------------------EVIE 129 (176)
T ss_pred HHhccCCCceEEeccCcHhhcchhhccCCccccc--ccccccccCEEEECCccccCc-------------------EEec
Confidence 9999999999999999999999999999999983 355555667999999988765 9999
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCcHHHHHHHHHHHhcC
Q 000831 170 PVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGLG 216 (1264)
Q Consensus 170 plde~~v~~~~~~l~~~gv~avaV~~l~S~~np~hE~~v~ei~~~~~ 216 (1264)
|||+++|++++++|+++|+++||||++|||+||+||+++++|++++|
T Consensus 130 ~ld~~~v~~~~~~l~~~gv~avAV~~~fS~~np~hE~~v~eii~e~g 176 (176)
T PF05378_consen 130 PLDEDEVREALRELKDKGVEAVAVSLLFSYRNPEHEQRVAEIIREEG 176 (176)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEECccCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999863
No 8
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=100.00 E-value=6.8e-35 Score=330.91 Aligned_cols=243 Identities=17% Similarity=0.179 Sum_probs=197.1
Q ss_pred HHHHHHHHHHhcC---CccEEEeecccCcCCcccchhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceEEEEEcCCCccc
Q 000831 204 HEMAVEKLALGLG---FRHVSLSSALTPMVRAVPRGLTASVDAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAP 280 (1264)
Q Consensus 204 hE~~v~ei~~~~~---~~~VtlS~ei~p~~~e~eR~~ttvlNAyl~p~~~~~l~~l~~~l~~~~~~~~l~i~~sdGG~~s 280 (1264)
-+..+++++++.+ ..-||.+-|+.- -|-.|. +=+..+.+.+++.+ .++++|||||||++|
T Consensus 38 L~~~l~~~~~~~~~~~~~avtMTgELaD--~f~~r~--------------~GV~~i~~~~~~~~-~~~~~i~~s~GG~~s 100 (318)
T TIGR03123 38 LAETLKEISQDLSSADNVAVTMTGELAD--CFEDKA--------------EGVEFILAAVESAF-GSPVSVFASDGGFVS 100 (318)
T ss_pred HHHHHHHHHHhcCccceEEEEeehhhhh--hhcCHH--------------HHHHHHHHHHHHhc-CCCeEEEecCCCCcc
Confidence 3344555555431 234888888872 233442 22333333444433 569999999999999
Q ss_pred ccccc--ccceecccchhHHHHHHHhccccCCCCCEEEEecCCCceEeeeec-cccceeeeeEEccE---------EEee
Q 000831 281 ESRFS--GHKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA-GSYEQVLETQIAGA---------IIQA 348 (1264)
Q Consensus 281 ~~~~~--pv~ti~SGPaagv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~-G~~~~~~~~~i~g~---------~~~~ 348 (1264)
+++++ |+++++|| ++.+|+++++ ..+|+|++|||||||||++|. |+|..+.+++++++ +++.
T Consensus 101 ~~~a~~~pv~~~~Sg---~~a~A~~la~---~~~~~I~~DmGGTTtDi~~i~~G~p~~~~~~d~~rl~~gelvy~g~vrt 174 (318)
T TIGR03123 101 AEEALTNPLDVAAAN---WLATAQLIAK---RIPECLFVDMGSTTTDIIPIIDGEVAAKGKTDLERLKTGELVYTGVLRT 174 (318)
T ss_pred HHHHHHhHHHHHHhh---HHHHHHHHHh---cCCCEEEEEcCccceeeEEecCCEeeeeechhhhhccCCceeeccceee
Confidence 99974 99999986 5666777773 278999999999999999995 99988877788744 9999
Q ss_pred cceeeEEEeccCCcEEEEeCCeEEEcccccccCCCcceeccCCCccHhHHHHHcCccCCCCCCCcCCCCCCCCCCHHH-H
Q 000831 349 PQLDINTVAAGGGSNLMFQLGAFRVGPESVGAHPGPVCYRKGGDLAVTDANLILGFVIPDYFPSIFGPNEDQPLDINA-T 427 (1264)
Q Consensus 349 p~~dv~sIGaGGGSi~~v~~g~l~VGP~SaGa~PGpacy~~GG~~TvTDA~l~lG~l~p~~fl~~~g~~g~~~ld~~~-a 427 (1264)
|+++|.+ ||+| ++|.++||||| .||+||||++||+|+|+.|+ ++. ..+.++ +
T Consensus 175 P~~~i~~------SIa~-~gg~l~Vgpe~--------------faT~tDa~lvLG~l~~~~~~-----~~~-~d~~~ks~ 227 (318)
T TIGR03123 175 PISALAR------EVPL-EGEWTRVSSEY--------------FAITADVYRLLGEITEEDYT-----CDT-PDGKGKSI 227 (318)
T ss_pred eHHHHHh------hhcc-CCCccccCcch--------------hhHHHHHHHHhCCCCchhhc-----CCC-cccccccH
Confidence 9999999 9999 89999999996 57999999999999999998 233 566666 6
Q ss_pred HHHHHHHHHHHhcccccCCCCCCCCCHHH--------HHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCchHHH
Q 000831 428 REKFQKLASEINSYRKSQDPSVKDMTVED--------IALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQH 499 (1264)
Q Consensus 428 ~~a~~~la~~lg~~~~~~~~~~~gl~~ee--------aA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag~~~ 499 (1264)
++|+++||++|| ++++| +|.+|+++++++|+++|+++++++|+|| ++|||+|++|
T Consensus 228 ~~a~~rlAr~lg------------~d~~e~~~~~~~~~A~~i~~~~~~~m~~ai~~v~~~~G~Dp-----v~~gGaG~~~ 290 (318)
T TIGR03123 228 EECMRRLARMVC------------ADLEELGEEDVRNLAKYYYEAQLEQLTEAIEEVLERYGLKT-----VVAAGAGEFL 290 (318)
T ss_pred HHHHHHHHHHhC------------CChhHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----eEEecchHHH
Confidence 889989999997 67555 9999999999999999999999999999 9999999999
Q ss_pred HHHHHHHcCCCEEE
Q 000831 500 ACAIARSLGMREVL 513 (1264)
Q Consensus 500 a~~~a~~Lgi~~vi 513 (1264)
++.+|++||++.|-
T Consensus 291 a~~lA~~lg~~~v~ 304 (318)
T TIGR03123 291 AKEAAARLGRECID 304 (318)
T ss_pred HHHHHHHcCCCeec
Confidence 99999999999753
No 9
>PF13941 MutL: MutL protein
Probab=99.56 E-value=1.3e-14 Score=172.34 Aligned_cols=368 Identities=17% Similarity=0.188 Sum_probs=230.6
Q ss_pred EEEEeccCccccEEEEe---cCCceEEEEEeccCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCC----------Ce
Q 000831 10 RFCIDRGGTFTDVYAEI---PGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTD----------KI 76 (1264)
Q Consensus 10 ~iGIDvGGTfTD~v~~~---~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~----------~i 76 (1264)
.+.+|+|.|||-+.++| ++.+++..+++|||.++ .++..|+.++++++.+. .|.......+ .+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~---~Dv~~G~~~A~~~l~~~-~~~~~~~~~~~~la~SSAaGGL 77 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEP---GDVTIGLNNALEQLEEQ-TPASPDDGYDKVLACSSAAGGL 77 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCc---ccHHHHHHHHHHHHHHh-cCCCcccCceEEEEECCCCCcc
Confidence 36799999999999997 34565677899987422 46788888888777543 2211000001 13
Q ss_pred eEEEEehh-----HHhhHhhhcCCCcEEEEEecCchhhhhhccCCCCCCccccccCCCCcceeEEEeeeeeecccccccc
Q 000831 77 EWIRMGTT-----VATNALLERKGERIALCVTRGFKDLLQIGNQARPQIFDLTVSTPSNLYEEVIEVDERVELVLENEKE 151 (1264)
Q Consensus 77 ~~i~~GTT-----~~tNAller~g~~vgli~t~GfrDvl~i~r~~~~~~~~~~~~~P~~l~~~~~~v~eRi~~~g~~~~~ 151 (1264)
+.++||-. .+-=-.--+-|+||--++ .+ .+...-++.+.+ ..
T Consensus 78 rmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~-s~--------------------~l~~~~l~~i~~------------~~ 124 (457)
T PF13941_consen 78 RMVVIGLVPDLTAEAAKRAALGAGARVLQVY-SY--------------------ELTEEDLEEIRE------------IR 124 (457)
T ss_pred eEEEEecCHHHHHHHHHHHHhcCCcEEEEEe-cc--------------------CCCHHHHHHHhc------------cC
Confidence 55555532 222222223345544432 11 011000000000 01
Q ss_pred cccceeecccCceeEEecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCcHHHHHHHHHHHhcCCccEEEeecccCcCC
Q 000831 152 NQESLVKGVSGELVRVVKPVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGLGFRHVSLSSALTPMVR 231 (1264)
Q Consensus 152 ~~~~~~~Gg~~~~G~v~~plde~~v~~~~~~l~~~gv~avaV~~l~S~~np~hE~~v~ei~~~~~~~~VtlS~ei~p~~~ 231 (1264)
.|++++.||++. | |.+.+.++++.|.+.+.+...|..-|+...+ ++++|+++.+. +++..-.|.|+++
T Consensus 125 PDiILLaGGtDg-G------~~~~il~nA~~La~~~~~~pVIyAGN~~a~~----~v~~il~~~~~-~~~~~~NV~P~i~ 192 (457)
T PF13941_consen 125 PDIILLAGGTDG-G------NKEVILHNAEMLAEANLRIPVIYAGNKAAQD----EVEEILEKAGK-EVVITENVMPKID 192 (457)
T ss_pred CCEEEEeCCccC-C------chHHHHHHHHHHHhCCCCCcEEEECCHHHHH----HHHHHHHhCCC-CEEEeCCCCCCCC
Confidence 278899999995 6 8899999999999999998888877765555 89999997666 6888999999999
Q ss_pred cccchhhhhhhhcccHHHHHHHHH-HHHHHhhcCCCceEEEEEcCCCccccccccccceecccchhHHHHHHHhccccCC
Q 000831 232 AVPRGLTASVDAYLTPVIKEYLSG-FMSKFDEGLAKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFGLET 310 (1264)
Q Consensus 232 e~eR~~ttvlNAyl~p~~~~~l~~-l~~~l~~~~~~~~l~i~~sdGG~~s~~~~~pv~ti~SGPaagv~Ga~~l~~~~~g 310 (1264)
...=+.+ ++.+++ |.+. |++..| +-.+.+.. -..++.-|.|-+.++.+|+++ +
T Consensus 193 ~ln~~pa-----------R~~I~~~F~~~-----------Ii~akG-l~~~~~~~-~~~i~PTP~AVl~~~~lla~~--~ 246 (457)
T PF13941_consen 193 VLNVEPA-----------REAIREVFLRH-----------IIQAKG-LSKLREMV-DGPIMPTPAAVLRAAELLAEG--G 246 (457)
T ss_pred CcChHHH-----------HHHHHHHHHHH-----------HhcCCC-HHHHHHHh-CCcccCCHHHHHHHHHHHHhc--c
Confidence 9988777 777776 5554 455555 43333332 357889999999999999843 7
Q ss_pred CCCEEEEecCCCceEeeee-ccccceee---------eeEEc---cEEEeecceeeEEEeccCCcEEEEeCCeEEEcccc
Q 000831 311 EKPLIGFDMGGTSTDVSRY-AGSYEQVL---------ETQIA---GAIIQAPQLDINTVAAGGGSNLMFQLGAFRVGPES 377 (1264)
Q Consensus 311 ~~~~I~~DmGGTStDv~li-~G~~~~~~---------~~~i~---g~~~~~p~~dv~sIGaGGGSi~~v~~g~l~VGP~S 377 (1264)
..+++++||||.||||..+ +|.|+... ...|+ |++.+.+.+ + ++
T Consensus 247 ~g~llvVDIGGATTDVhSv~~~~~~~~~~~~~~ep~~kRTVEGDLGmr~sa~~l-------------------~----e~ 303 (457)
T PF13941_consen 247 IGDLLVVDIGGATTDVHSVAEGSPEIPGIVLKPEPYAKRTVEGDLGMRYSAPNL-------------------L----EA 303 (457)
T ss_pred cCCEEEEEccCcccchhhhccCCccccccccCCcchhhhheeccccceechHHH-------------------H----Hh
Confidence 7899999999999999988 48775432 11222 444444333 1 22
Q ss_pred cccCCCcceec-cCC-CccHhHHHHHc--CccCCCCCCCcCCCCCCCCCCHHHHHHHHHH-HHHHHhcccccCCCCCCCC
Q 000831 378 VGAHPGPVCYR-KGG-DLAVTDANLIL--GFVIPDYFPSIFGPNEDQPLDINATREKFQK-LASEINSYRKSQDPSVKDM 452 (1264)
Q Consensus 378 aGa~PGpacy~-~GG-~~TvTDA~l~l--G~l~p~~fl~~~g~~g~~~ld~~~a~~a~~~-la~~lg~~~~~~~~~~~gl 452 (1264)
+| +.-.. +-+ +.+-.|..-.+ -..+|..++ ....+..+|..+|+.|++. +-++.|. +
T Consensus 304 ~g----~~~l~~~l~~~~~~~~l~~~~~~~~~~p~~iP---~t~~e~~~d~~LA~~A~~~A~~RHag~-----------~ 365 (457)
T PF13941_consen 304 AG----EEELRRWLPFPISEEELREYIENRMANPDTIP---QTEEELAFDQALAREAVELAVERHAGR-----------I 365 (457)
T ss_pred cc----hHHHHHHcCCcccHHHHHHHHHHHHhCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhcCc-----------C
Confidence 22 21110 011 11222221111 223566655 1133457888888888875 6666652 1
Q ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCchHHHHHHHHHHc
Q 000831 453 TVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQHACAIARSL 507 (1264)
Q Consensus 453 ~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag~~~a~~~a~~L 507 (1264)
.+.+....++..+.|.|.+.+.++...||...|++...+.|
T Consensus 366 --------------~~~~~p~g~~~~~~GkDL~~v~~iIgtGGvL~h~~~~~~il 406 (457)
T PF13941_consen 366 --------------RQVYTPMGRVYVQEGKDLTRVKYIIGTGGVLTHSPNPEEIL 406 (457)
T ss_pred --------------CccccCCcceeeecCcccccCCEEEEeCccccCCCCHHHHH
Confidence 22334445566899999999999999999999998766655
No 10
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=99.51 E-value=1.2e-13 Score=162.56 Aligned_cols=295 Identities=17% Similarity=0.164 Sum_probs=189.1
Q ss_pred ccceeecccCceeEEecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCcHHHHHHHHHHHhcCCccEEEeecccCcCCc
Q 000831 153 QESLVKGVSGELVRVVKPVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGLGFRHVSLSSALTPMVRA 232 (1264)
Q Consensus 153 ~~~~~~Gg~~~~G~v~~plde~~v~~~~~~l~~~gv~avaV~~l~S~~np~hE~~v~ei~~~~~~~~VtlS~ei~p~~~e 232 (1264)
|++++.||++. | |++-+.+.++.|.+.+.+.-.|+.-|....+ ++++|+.+.+. .+.....|.|.++.
T Consensus 122 DIILLaGGtDG-G------~~e~~l~NA~~La~~~~~~pIIyAGN~~a~~----~V~~il~~~~~-~~~i~eNV~P~i~~ 189 (463)
T TIGR01319 122 DIILFAGGTDG-G------EEECGIHNAKMLAEHGLDCAIIVAGNKDIQD----EVQEIFDHADI-FYRITDNVLPDLDH 189 (463)
T ss_pred CEEEEeCCcCC-C------chHHHHHHHHHHHhcCCCCcEEEeCCHHHHH----HHHHHHhcCCc-eEEecCCcCCCCCC
Confidence 78899999985 5 7888999999999999999888888877766 88899987566 57789999999999
Q ss_pred ccchhhhhhhhcccHHHHHHHHHH-HHHHhhcCCCceEEEEEcCCCccccccccccceecccchhHHHHHHHhccc---c
Q 000831 233 VPRGLTASVDAYLTPVIKEYLSGF-MSKFDEGLAKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFG---L 308 (1264)
Q Consensus 233 ~eR~~ttvlNAyl~p~~~~~l~~l-~~~l~~~~~~~~l~i~~sdGG~~s~~~~~pv~ti~SGPaagv~Ga~~l~~~---~ 308 (1264)
..=+.+ ++.+.++ .+. |++..| +-.+.+ ..-..+++-|.|-+.++.+|+.. .
T Consensus 190 ln~epa-----------R~~I~~vF~~~-----------Iv~akG-l~~i~~-~~~~~i~PTP~AV~~a~~~la~~~~~~ 245 (463)
T TIGR01319 190 LNPEAA-----------REAICDIFLKK-----------IVEAKG-LDNAED-FIGEELMPTPAAVFEAAKAIAEGTDKD 245 (463)
T ss_pred cCchHH-----------HHHHHHHHHHH-----------HhcCCC-HHHHHH-HhCCcccCCHHHHHHHHHHHHhccccc
Confidence 998888 8888773 555 444444 333322 12457889999999999999842 2
Q ss_pred CCCCCEEEEecCCCceEeeeec-cccceeeeeEEccEE--EeecceeeEEEeccCCcEEEEeC-CeEEEcccccccCCCc
Q 000831 309 ETEKPLIGFDMGGTSTDVSRYA-GSYEQVLETQIAGAI--IQAPQLDINTVAAGGGSNLMFQL-GAFRVGPESVGAHPGP 384 (1264)
Q Consensus 309 ~g~~~~I~~DmGGTStDv~li~-G~~~~~~~~~i~g~~--~~~p~~dv~sIGaGGGSi~~v~~-g~l~VGP~SaGa~PGp 384 (1264)
.|..++|++||||.||||..+. |.|... ...+.|+| ..=+.+ ++ =.++++=.+....-|+
T Consensus 246 ~g~g~ll~VDIGGATTDvhSv~~g~~~~~-~~~~~glpEp~~kRTV---------------EGDLGmr~sa~~v~e~~g~ 309 (463)
T TIGR01319 246 DGIGDFILIDIGGATTDVHSAAAGELSKP-DTTLHGLEEPFAKRTV---------------EGDLGMRVSAISLGEASAK 309 (463)
T ss_pred cCcCCEEEEEcCccccchhhccCCCcccc-cceecCCCccccccee---------------ecCCcceeehhHHHHhhch
Confidence 3457899999999999999884 877522 12222211 000111 11 0122221222111111
Q ss_pred cee-ccCC--CccHhHHHHHc--CccCCCCCCCcCCCCCCCCCCHHHHHHHHHH-HHHHHhcccccCCCCCCCCCHHHHH
Q 000831 385 VCY-RKGG--DLAVTDANLIL--GFVIPDYFPSIFGPNEDQPLDINATREKFQK-LASEINSYRKSQDPSVKDMTVEDIA 458 (1264)
Q Consensus 385 acy-~~GG--~~TvTDA~l~l--G~l~p~~fl~~~g~~g~~~ld~~~a~~a~~~-la~~lg~~~~~~~~~~~gl~~eeaA 458 (1264)
.-. .+.+ +-..+|..-.+ -..+|++++ -...+..+|..+|+.|++. +-++.|. +
T Consensus 310 ~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~iP---~t~eE~~fd~alA~~a~~~a~~RHaG~-----------~------ 369 (463)
T TIGR01319 310 EKLNKNFADNPADLDACCHYLRHLAAHIDMLP---ANAEEIKFDEALAGLATDMAMERHAGT-----------I------ 369 (463)
T ss_pred HHHHHHhcccchhhHHHHHHHHHHhhCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhcCc-----------c------
Confidence 110 0111 11223333222 234677766 1133457788888888875 6666663 1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCchHHHHH--HHHHHc-------CCCEEEECCCCCc-------cc
Q 000831 459 LGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQHAC--AIARSL-------GMREVLIHRFCGI-------LS 522 (1264)
Q Consensus 459 ~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag~~~a~--~~a~~L-------gi~~vivP~~~~v-------~s 522 (1264)
++++.....+..+.|.|.+.+..+...||-..|++ ...+.| .=+.++.|.++.+ ++
T Consensus 370 --------~~~~tp~g~~~~q~GkDL~~v~~vigtGGvL~ha~~~~~~~il~~~~~~~~~~~~L~p~~~~~~~D~~yil~ 441 (463)
T TIGR01319 370 --------EEMCTCMGNIDLQIGKDLLNVKCVIGSGGVLSHASQFDMGEILKAGEFDDADARHLKPQEFEYYIDKRGILP 441 (463)
T ss_pred --------ceeecCccceecccCCCchhCcEEEEeCcceeCCCCcCHHHHHhhhhccCCCccccCCcCCeEEEchhhHHH
Confidence 45556666777899999999999999999999997 444433 1244556655544 55
Q ss_pred ccccc
Q 000831 523 AYGMG 527 (1264)
Q Consensus 523 A~G~~ 527 (1264)
|+|.+
T Consensus 442 a~G~L 446 (463)
T TIGR01319 442 ALALL 446 (463)
T ss_pred HhhHh
Confidence 55554
No 11
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=97.48 E-value=0.0021 Score=70.98 Aligned_cols=230 Identities=18% Similarity=0.171 Sum_probs=129.2
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEcCCCcccccccc-ccceecccchhHHHHHHHhccccCCCCCEEEEecCCCceEeeee
Q 000831 251 EYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFS-GHKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRY 329 (1264)
Q Consensus 251 ~~l~~l~~~l~~~~~~~~l~i~~sdGG~~s~~~~~-pv~ti~SGPaagv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li 329 (1264)
..++..+++ +++|++++.++|-+.|.+... |-+.-. |+=+.-|.+++. .-.++.|.+|||.|||||=-|
T Consensus 78 ~Ii~~v~~A-----f~~pv~~v~~~G~~~ssEa~~~~~~vAA---aNW~Ata~~~~e--~~~dsci~VD~GSTTtDIIPi 147 (330)
T COG1548 78 DIIDTVEKA-----FNCPVYVVDVNGNFLSSEALKNPREVAA---ANWVATARFLAE--EIKDSCILVDMGSTTTDIIPI 147 (330)
T ss_pred HHHHHHHHh-----cCCceEEEeccCcCcChhHhcCHHHHHH---hhhHHHHHHHHH--hcCCceEEEecCCcccceEee
Confidence 334445554 378999999999998863332 433322 122223344442 233569999999999999877
Q ss_pred c-ccccee---ee-------eEEccEEEeecceeeEEEeccCCcEEEEeCCeEEEcccccccCCCcceeccCCCccHhHH
Q 000831 330 A-GSYEQV---LE-------TQIAGAIIQAPQLDINTVAAGGGSNLMFQLGAFRVGPESVGAHPGPVCYRKGGDLAVTDA 398 (1264)
Q Consensus 330 ~-G~~~~~---~~-------~~i~g~~~~~p~~dv~sIGaGGGSi~~v~~g~l~VGP~SaGa~PGpacy~~GG~~TvTDA 398 (1264)
. |+.... .+ ..++-.++++..+ ++-| -++++ |-|.|+.. -.+.-|+
T Consensus 148 ~~ge~~ag~tDlERL~~gELvY~GtLRTpvs~l-l~kv--------e~~g~------------~~~~ssE~--FAitAD~ 204 (330)
T COG1548 148 KDGEAAAGKTDLERLKNGELVYVGTLRTPVSFL-LNKV--------EFEGK------------LTPLSSEY--FAITADA 204 (330)
T ss_pred cchhhhhccchHHHHhcCceEEEeeccccHHHH-hhhh--------ccCCC------------cccccHHH--HHHHHHH
Confidence 4 753211 11 1223333333222 0000 00111 12333320 0245699
Q ss_pred HHHcCccCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000831 399 NLILGFVIPDYFPSIFGPNEDQPLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANETMCRPIRQLTE 478 (1264)
Q Consensus 399 ~l~lG~l~p~~fl~~~g~~g~~~ld~~~a~~a~~~la~~lg~~~~~~~~~~~gl~~eeaA~~i~~~a~~~m~~~i~~~~~ 478 (1264)
+++||.++++.|-- --|.|.-+ +++-+-. +||+-+=.=+|.+.+ -.+-+.|..+++.-..+++..|..++.
T Consensus 205 ~lilg~I~eedYTc-~TpDGaGk-s~eecmr---RlaR~vCaDleelg~----~~v~d~A~~~~~~~l~~l~e~I~~~a~ 275 (330)
T COG1548 205 SLILGKITEEDYTC-DTPDGAGK-SREECMR---RLARTVCADLEELGE----EEVIDLAEKAYNALLELLAENIEEKAK 275 (330)
T ss_pred HHHhcCCChhhcCC-CCCCCCCC-CHHHHHH---HHHHHHhCCHHHcCh----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887641 11223222 4444433 344333211122222 246788999999999999999999999
Q ss_pred HhCCCCCCceEEEEcCchHHHHHHHHHHcCCCEEEECCC-----CCcccccccc
Q 000831 479 MKGHETRNHALACFGGAGPQHACAIARSLGMREVLIHRF-----CGILSAYGMG 527 (1264)
Q Consensus 479 ~~G~dpr~~~lv~~GGag~~~a~~~a~~Lgi~~vivP~~-----~~v~sA~G~~ 527 (1264)
++|++ . |..-|.|-.+...-+++||..-..+-.. +-++-|+|++
T Consensus 276 r~gL~----~-Vv~~GlGefLi~~A~~~lg~ec~~i~e~~g~~~s~v~PA~a~a 324 (330)
T COG1548 276 RYGLN----T-VVATGLGEFLIQEACKRLGYECISIDETYGKEVSKVAPAVAAA 324 (330)
T ss_pred HcChh----h-hhhccchHHHHHHHHHhhCCeEEEhhhhhccchhhhchHHHHH
Confidence 99987 3 3444666777777788888764433322 3445566654
No 12
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=96.63 E-value=0.011 Score=66.36 Aligned_cols=65 Identities=20% Similarity=0.295 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCchHH--HHHHHHHHcCCCEEEECCCCCcccccccccc
Q 000831 460 GFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQ--HACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1264)
Q Consensus 460 ~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag~~--~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~a 529 (1264)
.+++-..+++.+.|++...+.+.+ .++..||+..+ ..-.+.+.||++ |.+|.+|....|+|++++
T Consensus 173 ~~i~~~~~~i~~~i~~~l~~~~~~----~v~LtGG~a~ipgl~e~l~~~lg~~-v~~~~~P~~~va~Gaa~~ 239 (239)
T TIGR02529 173 PVVKPVYQKMASIVKRHIEGQGVK----DLYLVGGACSFSGFADVFEKQLGLN-VIKPQHPLYVTPLGIAMS 239 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC----EEEEECchhcchhHHHHHHHHhCCC-cccCCCCCeehhheeecC
Confidence 455556677888888777654433 57777777543 335678889997 788999999999999874
No 13
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=95.87 E-value=0.083 Score=60.36 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCch--HHHHHHHHHHcCCCEEEECCCCCccccccccc
Q 000831 458 ALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAYGMGL 528 (1264)
Q Consensus 458 A~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag--~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ 528 (1264)
...+++-..+++.+.|++...+. ++. .++..||+. |...-.+.+.||++ |.+|.+|....|+|++.
T Consensus 198 ~~~ii~~~~~~i~~~i~~~l~~~--~~~--~IvLtGG~s~lpgl~e~l~~~lg~~-v~~~~~P~~~~a~Gaa~ 265 (267)
T PRK15080 198 IFPVVKPVVEKMASIVARHIEGQ--DVE--DIYLVGGTCCLPGFEEVFEKQTGLP-VHKPQHPLFVTPLGIAL 265 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCC--EEEEECCcccchhHHHHHHHHhCCC-cccCCCchHHHHHHHHh
Confidence 34555666677777777765543 333 566667765 33445788889987 77899999999999975
No 14
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=95.67 E-value=0.057 Score=63.19 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=31.2
Q ss_pred eEEEEcCchHHHHHHHHHHcCC--CEEEECCCCCcccccccc
Q 000831 488 ALACFGGAGPQHACAIARSLGM--REVLIHRFCGILSAYGMG 527 (1264)
Q Consensus 488 ~lv~~GGag~~~a~~~a~~Lgi--~~vivP~~~~v~sA~G~~ 527 (1264)
.++..|||+.++...+-+..+. .+++++.+|..+||-|++
T Consensus 275 ~I~~vGGGA~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 275 RIFFVGGGAILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp EEEEESTTHHHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred eEEEECCcHHHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 4666789888888888888774 679999999999999875
No 15
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=95.28 E-value=0.01 Score=67.45 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCchHHHHHHH-------HHHc-CCCEEEECCCCCccccccc
Q 000831 455 EDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQHACAI-------ARSL-GMREVLIHRFCGILSAYGM 526 (1264)
Q Consensus 455 eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag~~~a~~~-------a~~L-gi~~vivP~~~~v~sA~G~ 526 (1264)
.+.|..|++-+...+++.+..+..+.+..... ++..||- ..+...+ .+.+ .. .+.+|..|....|+|+
T Consensus 192 d~~a~~Il~~a~~~la~~i~~~~~~~~~~~~~--v~l~GGv-~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~a~GA 267 (271)
T PF01869_consen 192 DEVARDILAEAADELAELIKAVLKRLGPEKEP--VVLSGGV-FKNSPLVKALRDALKEKLPKV-PIIIPVEPQYDPAYGA 267 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTCTCCCCS--EEEESGG-GGCHHHHHHHGGGS-HHHHCC-TCECECCGSSHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCCCCe--EEEECCc-cCchHHHHHHHHHHHHhcCCC-ceEECCCCCccHHHHH
Confidence 57788888888899998888887664433222 5555553 3333322 2333 34 3577788888899988
Q ss_pred cc
Q 000831 527 GL 528 (1264)
Q Consensus 527 ~~ 528 (1264)
++
T Consensus 268 al 269 (271)
T PF01869_consen 268 AL 269 (271)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 16
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=94.59 E-value=0.33 Score=57.20 Aligned_cols=76 Identities=17% Similarity=0.136 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCC----CCceEEEEcCchHH--HHHHHHHHcCCCEEEECCCCCcccccc
Q 000831 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHET----RNHALACFGGAGPQ--HACAIARSLGMREVLIHRFCGILSAYG 525 (1264)
Q Consensus 452 l~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dp----r~~~lv~~GGag~~--~a~~~a~~Lgi~~vivP~~~~v~sA~G 525 (1264)
++.++..+ +++--.+++.+.|++.....+.+. -+..++..||+.-+ ....+.+.++++ |.+..+|..+.|.|
T Consensus 239 i~~~~~~e-ii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~-v~~~~~P~~ava~G 316 (336)
T PRK13928 239 VTSEEIRE-ALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVP-VYIAEDPISCVALG 316 (336)
T ss_pred ECHHHHHH-HHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCC-ceecCCHHHHHHHH
Confidence 44556553 444445677778887777665332 12246777776543 345677888987 77888999999999
Q ss_pred cccc
Q 000831 526 MGLA 529 (1264)
Q Consensus 526 ~~~a 529 (1264)
+++.
T Consensus 317 aa~~ 320 (336)
T PRK13928 317 TGKM 320 (336)
T ss_pred HHHH
Confidence 9876
No 17
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=93.97 E-value=0.1 Score=59.85 Aligned_cols=72 Identities=22% Similarity=0.128 Sum_probs=44.6
Q ss_pred CCCCcEEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChH-HHH---HHHHHHHhhCCCCCCCCCCCCCCeeEE
Q 000831 4 VKEEKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAP-VEG---IRRILEEYTGEKIPRTSKIPTDKIEWI 79 (1264)
Q Consensus 4 ~~~~~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v-~~g---i~~~l~~~~~~~~~~~~~~~~~~i~~i 79 (1264)
|.+++|.||||-|||-|-+++.|.+|+++...|.. |.|+.... .++ |.+++.+..++ .+.++++|...
T Consensus 1 ~~~~~~~lGVDGGGTkt~a~l~~~~g~vlg~g~sG---pAN~~~~~~e~A~~ni~~ai~~A~~~-----aG~~~~~i~~~ 72 (301)
T COG2971 1 MEPMPYFLGVDGGGTKTRAVLADEDGNVLGRGKSG---PANIQLVGKEEAVRNIKDAIREALDE-----AGLKPDEIAAI 72 (301)
T ss_pred CCCccEEEEEccCCcceEEEEEcCCCcEEEEeccC---CceecccchHHHHHHHHHHHHHHHHh-----cCCCHHHhCce
Confidence 45578999999999999999998788866777763 33322222 223 33333332221 35667777666
Q ss_pred EEeh
Q 000831 80 RMGT 83 (1264)
Q Consensus 80 ~~GT 83 (1264)
..|.
T Consensus 73 ~agl 76 (301)
T COG2971 73 VAGL 76 (301)
T ss_pred eeee
Confidence 5554
No 18
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=93.82 E-value=0.34 Score=56.80 Aligned_cols=48 Identities=8% Similarity=0.049 Sum_probs=35.3
Q ss_pred HhCCCCCCceEEEEcCchHHHHHHHHHHcCCCEEEECCCCCccccccccc
Q 000831 479 MKGHETRNHALACFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGL 528 (1264)
Q Consensus 479 ~~G~dpr~~~lv~~GGag~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ 528 (1264)
+++.|.+ .++..|||+.++...+.+...-.++.++++|..+||-|...
T Consensus 269 ~~~~~~~--~Iil~GGGa~ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~ 316 (320)
T TIGR03739 269 GAPESIQ--NIVLVGGGAFLFKKAVKAAFPKHRIVEVDEPMFANVRGFQI 316 (320)
T ss_pred ccCCccc--EEEEeCCcHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHH
Confidence 3455544 47778888788888887777545677889999999988653
No 19
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=93.13 E-value=0.65 Score=59.08 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=42.8
Q ss_pred HHHHHhhHHHHHHHHHhCCCCCCc-eEEEEcCchHHH--HHHHHHHcCCCEEEECCCCCccccccccc
Q 000831 464 VANETMCRPIRQLTEMKGHETRNH-ALACFGGAGPQH--ACAIARSLGMREVLIHRFCGILSAYGMGL 528 (1264)
Q Consensus 464 ~a~~~m~~~i~~~~~~~G~dpr~~-~lv~~GGag~~~--a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ 528 (1264)
-..+++.+.|+++..+.|+.+.+. .++..||+.-+- --.+.+.+| ..+....+|.-+-|.|+++
T Consensus 302 ~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~~pdeava~GAa~ 368 (595)
T TIGR02350 302 DLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSVNPDEVVAIGAAI 368 (595)
T ss_pred HHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccCCcCcHHHHHHHHHH
Confidence 334566677777777888877664 566677764322 235566677 4466677888888888887
No 20
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=92.90 E-value=0.36 Score=56.58 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC----CceEEEEcCch--HHHHHHHHHHcCCCEEEECCCCCcccccc
Q 000831 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETR----NHALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAYG 525 (1264)
Q Consensus 452 l~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr----~~~lv~~GGag--~~~a~~~a~~Lgi~~vivP~~~~v~sA~G 525 (1264)
++.++.. .++.-..+++.+.|++...+...+.+ +-.++..||+. |.....+.++++++ +.++.+|-.+.|.|
T Consensus 244 i~~~~~~-e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~-v~~~~~p~~ava~G 321 (335)
T PRK13930 244 ISSEEVR-EALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLP-VHIAEDPLTCVARG 321 (335)
T ss_pred ECHHHHH-HHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCC-ceecCCHHHHHHHH
Confidence 3445554 34444445666666666555433332 12478888887 66677889999987 67888899999999
Q ss_pred cccc
Q 000831 526 MGLA 529 (1264)
Q Consensus 526 ~~~a 529 (1264)
++..
T Consensus 322 a~~~ 325 (335)
T PRK13930 322 TGKA 325 (335)
T ss_pred HHHH
Confidence 9876
No 21
>PRK00047 glpK glycerol kinase; Provisional
Probab=92.75 E-value=0.098 Score=64.93 Aligned_cols=84 Identities=14% Similarity=0.073 Sum_probs=53.0
Q ss_pred CCCCcEEEEEeccCccccEEEEecCCceEEEEEecc--CCCCC-----CCChHHHHHHHHHHHhhCCCCCCCCCCCCCCe
Q 000831 4 VKEEKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLS--VDPTN-----YDDAPVEGIRRILEEYTGEKIPRTSKIPTDKI 76 (1264)
Q Consensus 4 ~~~~~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~s--t~p~d-----~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i 76 (1264)
|++.+|.||||+|+|.+-++++|.+|+++...+.+. ..|.+ -.+.+.+.+..+++++.++ .+.++++|
T Consensus 1 ~~m~~~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~-----~~~~~~~I 75 (498)
T PRK00047 1 MMMKKYILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAK-----AGISPDQI 75 (498)
T ss_pred CCccCEEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHH-----cCCChhHe
Confidence 445568999999999999999987888665544322 11211 1223466666666665432 23456778
Q ss_pred eEEEEehhHHhhHhhh
Q 000831 77 EWIRMGTTVATNALLE 92 (1264)
Q Consensus 77 ~~i~~GTT~~tNAlle 92 (1264)
..|-++++..+=.++.
T Consensus 76 ~~Igis~~~~~~v~~D 91 (498)
T PRK00047 76 AAIGITNQRETTVVWD 91 (498)
T ss_pred eEEEEecCcceEEEEE
Confidence 8888888655444443
No 22
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=92.33 E-value=0.78 Score=49.73 Aligned_cols=67 Identities=19% Similarity=0.201 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCchHH--HHHHHHHHcCCCEEEECCCCCccccccccccce
Q 000831 460 GFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQ--HACAIARSLGMREVLIHRFCGILSAYGMGLADV 531 (1264)
Q Consensus 460 ~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag~~--~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ad~ 531 (1264)
-+++=+.++|+.-+++..+.+|.. .|+..||+-.. ....+.++|+++ |..|.+|-..--+|.+++-.
T Consensus 205 ~~v~PV~eKMAeIv~~hie~~~i~----dl~lvGGac~~~g~e~~Fe~~l~l~-v~~P~~p~y~TPLgIA~sg~ 273 (277)
T COG4820 205 PVVKPVYEKMAEIVARHIEGQGIT----DLWLVGGACMQPGVEELFEKQLALQ-VHLPQHPLYMTPLGIASSGR 273 (277)
T ss_pred cchhHHHHHHHHHHHHHhccCCCc----ceEEecccccCccHHHHHHHHhccc-cccCCCcceechhhhhhccc
Confidence 345566799999999988877765 47888887322 224567788888 89999999888888887643
No 23
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=91.85 E-value=0.34 Score=58.09 Aligned_cols=70 Identities=20% Similarity=0.360 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhH-HHHHHHHHhCCCCCCceEEEEcCchHHHH---HHHHHHcCCCEEEECCCCCcccccc
Q 000831 450 KDMTVEDIALGFVNVANETMCR-PIRQLTEMKGHETRNHALACFGGAGPQHA---CAIARSLGMREVLIHRFCGILSAYG 525 (1264)
Q Consensus 450 ~gl~~eeaA~~i~~~a~~~m~~-~i~~~~~~~G~dpr~~~lv~~GGag~~~a---~~~a~~Lgi~~vivP~~~~v~sA~G 525 (1264)
.|.+.++++.++..-..++... .++. ++.++- ++.-|| -..+. -.+.+.||.+ +++|++|..+.|+|
T Consensus 326 ~G~~~eDIaAGl~~SIa~rv~~~l~~~------~~i~~~-VvftGG-va~N~gvv~ale~~Lg~~-iivPe~pq~~GAiG 396 (404)
T TIGR03286 326 EGASPEDVAAAACHSVAEQVYEQQLQE------IDVREP-VILVGG-TSLIEGLVKALGDLLGIE-VVVPEYSQYIGAVG 396 (404)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhc------CCCCCc-EEEECC-hhhhHHHHHHHHHHhCCc-EEECCcccHHHHHH
Confidence 3688999999999777777665 2322 334433 333344 22222 2456678876 89999999999999
Q ss_pred ccc
Q 000831 526 MGL 528 (1264)
Q Consensus 526 ~~~ 528 (1264)
+++
T Consensus 397 AAL 399 (404)
T TIGR03286 397 AAL 399 (404)
T ss_pred HHH
Confidence 986
No 24
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=91.11 E-value=0.25 Score=61.69 Aligned_cols=86 Identities=12% Similarity=0.015 Sum_probs=56.0
Q ss_pred cEEEEEeccCccccEEEEecCCceEEEEEeccC----CCC-C-C---CChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeE
Q 000831 8 KLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSV----DPT-N-Y---DDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEW 78 (1264)
Q Consensus 8 ~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st----~p~-d-~---~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~ 78 (1264)
+|.||||+|.|++-++++|.+|+++...+.+.+ .|. . . +....+++..+++++..+ .++++++|..
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~-----~~~~~~~I~a 77 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQK-----AGIPASDIAA 77 (520)
T ss_pred cEEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHH-----cCCCccceEE
Confidence 589999999999999999988885655554321 111 0 0 112355555555554422 2345567999
Q ss_pred EEEehhHHhhHhhhcCCCcE
Q 000831 79 IRMGTTVATNALLERKGERI 98 (1264)
Q Consensus 79 i~~GTT~~tNAller~g~~v 98 (1264)
|..+|...+-.++-++|..+
T Consensus 78 I~~s~~~~~~v~~D~~g~pl 97 (520)
T PRK10939 78 VSATSMREGIVLYDRNGTEI 97 (520)
T ss_pred EEEECCcccEEEECCCCCEe
Confidence 98888777777777777665
No 25
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=90.97 E-value=0.52 Score=53.16 Aligned_cols=70 Identities=23% Similarity=0.325 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCch--HHHHHHHHHHcCCCEEEECCCCCccccccccc
Q 000831 451 DMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAYGMGL 528 (1264)
Q Consensus 451 gl~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag--~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ 528 (1264)
|.+.++++.++++-...++.+.++. ++++.. ++..||.. +...-.+++.|+.+ |++|+++..+.|+|+++
T Consensus 176 g~~~~di~~~~~~~va~~i~~~~~~------~~~~~~-Vvl~GGva~n~~l~~~l~~~lg~~-v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 176 GVKKEDILAGVYESIAERVAEMLQR------LKIEAP-IVFTGGVSKNKGLVKALEKKLGMK-VITPPEPQIVGAVGAAL 247 (248)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhh------cCCCCC-EEEECccccCHHHHHHHHHHhCCc-EEcCCCccHHHHHHHHh
Confidence 4678888888887666666654432 234323 34444432 12223577888876 89999999999999986
No 26
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=90.95 E-value=0.49 Score=54.71 Aligned_cols=72 Identities=19% Similarity=0.233 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCchHH---HHHHHHHHcCCCEEEECCCCCccccccc
Q 000831 450 KDMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQ---HACAIARSLGMREVLIHRFCGILSAYGM 526 (1264)
Q Consensus 450 ~gl~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag~~---~a~~~a~~Lgi~~vivP~~~~v~sA~G~ 526 (1264)
.|.+.++++.++..-...+.+..++++ ++... + .|.||-.. +...+.+.||.+-..+|++|..+.|+|+
T Consensus 211 ~G~~~edI~aGl~~sia~rv~~~~~~~----~i~~~---v-~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGA 282 (293)
T TIGR03192 211 AGYTKNMVIAAYCQAMAERVVSLLERI----GVEEG---F-FITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGA 282 (293)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccc----CCCCC---E-EEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHH
Confidence 368899999998876666655554443 22222 3 44444322 2345677888874336888999999998
Q ss_pred ccc
Q 000831 527 GLA 529 (1264)
Q Consensus 527 ~~a 529 (1264)
++-
T Consensus 283 AL~ 285 (293)
T TIGR03192 283 ALF 285 (293)
T ss_pred HHH
Confidence 864
No 27
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=90.25 E-value=0.56 Score=55.33 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhhH-HHHHHHHHhCCCCCCceEEEEcCchHHHH--HHHHHHcCCCEEEECCCCCccccccc
Q 000831 450 KDMTVEDIALGFVNVANETMCR-PIRQLTEMKGHETRNHALACFGGAGPQHA--CAIARSLGMREVLIHRFCGILSAYGM 526 (1264)
Q Consensus 450 ~gl~~eeaA~~i~~~a~~~m~~-~i~~~~~~~G~dpr~~~lv~~GGag~~~a--~~~a~~Lgi~~vivP~~~~v~sA~G~ 526 (1264)
.|.++|+++.|+..-..+|+.. -++ ..++++- ++.-||-.---+ -.+.+.||++ |++|++|++..|+|+
T Consensus 313 ~G~~~EdI~AGl~~Sv~~~v~~~~~~------~~~i~~~-iv~~GGva~n~av~~ale~~lg~~-V~vP~~~ql~GAiGA 384 (396)
T COG1924 313 EGASPEDILAGLAYSVAENVAEKVIK------RVDIEEP-IVLQGGVALNKAVVRALEDLLGRK-VIVPPYAQLMGAIGA 384 (396)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhh------ccCCCCC-EEEECcchhhHHHHHHHHHHhCCe-eecCCccchhhHHHH
Confidence 3789999999999877777766 333 3566665 666677533322 2456677865 999999999999999
Q ss_pred ccc
Q 000831 527 GLA 529 (1264)
Q Consensus 527 ~~a 529 (1264)
++-
T Consensus 385 AL~ 387 (396)
T COG1924 385 ALI 387 (396)
T ss_pred HHH
Confidence 863
No 28
>PRK13410 molecular chaperone DnaK; Provisional
Probab=90.00 E-value=1.4 Score=57.01 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=38.6
Q ss_pred HHHHhhHHHHHHHHHhCCCCCCc-eEEEEcCchHHH--HHHHHHHcCCCEEEECCCCCccccccccc
Q 000831 465 ANETMCRPIRQLTEMKGHETRNH-ALACFGGAGPQH--ACAIARSLGMREVLIHRFCGILSAYGMGL 528 (1264)
Q Consensus 465 a~~~m~~~i~~~~~~~G~dpr~~-~lv~~GGag~~~--a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ 528 (1264)
-.+.+...|++.....|+++.+. .++..||+.-+- --.+.+.+|.+ +....+|.-+-|+||++
T Consensus 307 l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~-~~~~~npdeaVA~GAAi 372 (668)
T PRK13410 307 LLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPRE-PNQNVNPDEVVAVGAAI 372 (668)
T ss_pred HHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCC-cccCCCCchHHHHhHHH
Confidence 33556667777777788877664 366777765332 23455566743 34445666667777765
No 29
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=89.99 E-value=0.27 Score=60.96 Aligned_cols=80 Identities=15% Similarity=0.044 Sum_probs=51.8
Q ss_pred cEEEEEeccCccccEEEEecCCceEEEEEeccC--CCCC-----CCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEE
Q 000831 8 KLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSV--DPTN-----YDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIR 80 (1264)
Q Consensus 8 ~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st--~p~d-----~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~i~ 80 (1264)
.|.||||+|+|.+-++++|.+|+++...+.+.. .|.+ -.+.+.+.+..+++++.++ .++++++|..|-
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~-----~~~~~~~i~aIg 75 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAK-----AGIKPDDIAAIG 75 (493)
T ss_pred CeEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHH-----cCCChhheeEEE
Confidence 378999999999999999988886666665331 1211 1223566666666665432 234567888898
Q ss_pred EehhHHhhHhhh
Q 000831 81 MGTTVATNALLE 92 (1264)
Q Consensus 81 ~GTT~~tNAlle 92 (1264)
++++..+--++-
T Consensus 76 is~~~~~~v~~D 87 (493)
T TIGR01311 76 ITNQRETTVVWD 87 (493)
T ss_pred EecCcceEEEEE
Confidence 888655544443
No 30
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=89.65 E-value=2.7 Score=54.21 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=37.8
Q ss_pred HHhhHHHHHHHHHhCCCCCCc-eEEEEcCchHH--HHHHHHHHcCCCEEEECCCCCccccccccc
Q 000831 467 ETMCRPIRQLTEMKGHETRNH-ALACFGGAGPQ--HACAIARSLGMREVLIHRFCGILSAYGMGL 528 (1264)
Q Consensus 467 ~~m~~~i~~~~~~~G~dpr~~-~lv~~GGag~~--~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ 528 (1264)
+.+...|+++..+.|+++.+. .++..||+.-+ .--.+.+.++-+.+..-.+|.-+-|+|+++
T Consensus 313 ~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~ 377 (653)
T PTZ00009 313 RNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAV 377 (653)
T ss_pred HHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhh
Confidence 344455666666777776554 45666776432 223556666644455556777788888876
No 31
>PRK13318 pantothenate kinase; Reviewed
Probab=89.28 E-value=1 Score=51.16 Aligned_cols=63 Identities=16% Similarity=0.046 Sum_probs=42.0
Q ss_pred EEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEEeh
Q 000831 10 RFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRMGT 83 (1264)
Q Consensus 10 ~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~i~~GT 83 (1264)
.++||+|||++-..++| +++++...+.+|. .....+.+.+.+++.++.. ++++++++.|.+|+
T Consensus 2 iL~IDIGnT~iK~al~d-~g~i~~~~~~~t~-~~~~~~~~~~~l~~l~~~~---------~~~~~~i~~I~iss 64 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-GGKLVAHWRISTD-SRRTADEYGVWLKQLLGLS---------GLDPEDITGIIISS 64 (258)
T ss_pred EEEEEECCCcEEEEEEE-CCEEEEEEEEeCC-CCCCHHHHHHHHHHHHHHc---------CCCcccCceEEEEE
Confidence 68999999999999997 5664556666552 2333344555666665542 23445688888887
No 32
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=89.18 E-value=5.5 Score=47.10 Aligned_cols=146 Identities=16% Similarity=0.106 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHH-CCC--CEEEEEecCCCC------Cc-H-HHHHHHHHHHhc-----C--CccEEEeecccCcCCc
Q 000831 171 VNEKTLEPLLKGLLE-KGI--SCLAVVLMHSYT------FP-Q-HEMAVEKLALGL-----G--FRHVSLSSALTPMVRA 232 (1264)
Q Consensus 171 lde~~v~~~~~~l~~-~gv--~avaV~~l~S~~------np-~-hE~~v~ei~~~~-----~--~~~VtlS~ei~p~~~e 232 (1264)
.|.+.+.++++++.+ .+. +.+++|+--+.. =| . .|.++++.++-+ + ...+.+.+++......
T Consensus 42 ~d~~~l~~~L~~~~~~~~~~~k~v~~aip~~~vi~r~i~lP~~m~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~ 121 (340)
T PF11104_consen 42 VDPEALAEALKELLKENKIKGKKVVLAIPGSSVIIRNIRLPAVMPEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESED 121 (340)
T ss_dssp S-HHHHHHHHHHHHHHHT----EEEEEE-GGG-EEEEEEEE----HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-
T ss_pred CCHHHHHHHHHHHHHHcCCCCCeEEEEeCCCcEEEEEEecCCCCCHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCC
Confidence 378888888887644 454 567776543322 13 2 567777777642 2 2347888988865522
Q ss_pred ccchhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceEEEEEcCCCccccccccccceecccchhHHHHHHHhccccCCCC
Q 000831 233 VPRGLTASVDAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFGLETEK 312 (1264)
Q Consensus 233 ~eR~~ttvlNAyl~p~~~~~l~~l~~~l~~~~~~~~l~i~~sdGG~~s~~~~~pv~ti~SGPaagv~Ga~~l~~~~~g~~ 312 (1264)
-+-.....+=|.=+..+.+|++-|++. ++ .+.+++ +-+.+-.+.+.... ..+. .....+
T Consensus 122 ~~~~~~Vll~Aa~k~~v~~~~~~~~~a----GL--~~~~vD----v~~~Al~r~~~~~~----------~~~~-~~~~~~ 180 (340)
T PF11104_consen 122 GEEKMEVLLVAAPKEIVESYVELFEEA----GL--KPVAVD----VEAFALARLFEFLE----------PQLP-DEEDAE 180 (340)
T ss_dssp TTSEEEEEEEEEEHHHHHHHHHHHHHT----T---EEEEEE----EHHHHGGGGGHHHH----------HTST-----T-
T ss_pred CCCceEEEEEEEcHHHHHHHHHHHHHc----CC--ceEEEe----ehHHHHHHHHHHHH----------HhCC-cccccc
Confidence 222334456677777777777777665 43 223332 11111111111100 0011 001123
Q ss_pred CEEEEecCCCceEeeeec-cccceee
Q 000831 313 PLIGFDMGGTSTDVSRYA-GSYEQVL 337 (1264)
Q Consensus 313 ~~I~~DmGGTStDv~li~-G~~~~~~ 337 (1264)
.+.++|||..+|.++++. |.+..++
T Consensus 181 ~~~lvdiG~~~t~~~i~~~g~~~f~R 206 (340)
T PF11104_consen 181 TVALVDIGASSTTVIIFQNGKPIFSR 206 (340)
T ss_dssp EEEEEEE-SS-EEEEEEETTEEEEEE
T ss_pred eEEEEEecCCeEEEEEEECCEEEEEE
Confidence 578999999999999996 8885543
No 33
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=89.17 E-value=0.32 Score=54.44 Aligned_cols=72 Identities=18% Similarity=0.046 Sum_probs=45.6
Q ss_pred EEEEEeccCccccEEEEecCCceEEEEEecc--CCCCC-----CCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEE
Q 000831 9 LRFCIDRGGTFTDVYAEIPGQLEGQVLKLLS--VDPTN-----YDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRM 81 (1264)
Q Consensus 9 ~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~s--t~p~d-----~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~i~~ 81 (1264)
|.||||+|.|++-++++|.+|+++...+.+. ..+.+ -.+.+.+.+..+++++..+ .+.+.++|..|.+
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~-----~~~~~~~I~aI~i 75 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQ-----AGIDPEQIKAIGI 75 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHH-----CTSCGGGEEEEEE
T ss_pred CEEEEEEcccceEEEEEeCCCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhh-----cCcccceeEEEEe
Confidence 6799999999999999998888655554422 11111 1223455555555555432 2356678999988
Q ss_pred ehhH
Q 000831 82 GTTV 85 (1264)
Q Consensus 82 GTT~ 85 (1264)
+|+.
T Consensus 76 s~~~ 79 (245)
T PF00370_consen 76 SGQG 79 (245)
T ss_dssp EE-S
T ss_pred cccc
Confidence 8753
No 34
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=88.92 E-value=0.95 Score=51.64 Aligned_cols=72 Identities=15% Similarity=0.233 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCchHH---HHHHHHHHcCCCE----EEECCCCCccc
Q 000831 450 KDMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQ---HACAIARSLGMRE----VLIHRFCGILS 522 (1264)
Q Consensus 450 ~gl~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag~~---~a~~~a~~Lgi~~----vivP~~~~v~s 522 (1264)
.|.+.++++.++.+-...+.+..++++-. .+-.++.-||- .. ..-.+.++|+-.+ |.+|++|..+.
T Consensus 182 ~G~~~edI~aGl~~sia~r~~~~~~~~~~------~~~~v~~~GGv-a~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~g 254 (262)
T TIGR02261 182 RGISAPNILKGIHESMADRLAKLLKSLGA------LDGTVLCTGGL-ALDAGLLEALKDAIQEAKMAVAAENHPDAIYAG 254 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhccCC------CCCcEEEECcc-cccHHHHHHHHHHhccCCcceEecCCCcchHHH
Confidence 36899999999998777777666665421 11124444442 22 2234566674222 55678999999
Q ss_pred cccccc
Q 000831 523 AYGMGL 528 (1264)
Q Consensus 523 A~G~~~ 528 (1264)
|+|+++
T Consensus 255 AlGAAl 260 (262)
T TIGR02261 255 AIGAAL 260 (262)
T ss_pred HHHHHH
Confidence 999986
No 35
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=88.89 E-value=2.4 Score=54.73 Aligned_cols=63 Identities=11% Similarity=0.088 Sum_probs=39.7
Q ss_pred HHHhhHHHHHHHHHhCCCCCC-ceEEEEcCchHH--HHHHHHHHcCCCEEEECCCCCcccccccccc
Q 000831 466 NETMCRPIRQLTEMKGHETRN-HALACFGGAGPQ--HACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1264)
Q Consensus 466 ~~~m~~~i~~~~~~~G~dpr~-~~lv~~GGag~~--~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~a 529 (1264)
.+++.+.|++...+.|+++.+ -.++..||+.-+ .--.+.+.+|.+ +....+|.-+-|+|+++-
T Consensus 347 ~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~-~~~~~npdeaVA~GAAi~ 412 (663)
T PTZ00400 347 LKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKE-PSKGVNPDEAVAMGAAIQ 412 (663)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCC-cccCCCCccceeeccHHH
Confidence 355666667777777776655 346667776432 234566667754 455567777888888763
No 36
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=88.76 E-value=1 Score=53.31 Aligned_cols=50 Identities=20% Similarity=0.096 Sum_probs=35.5
Q ss_pred CcEEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHh
Q 000831 7 EKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEY 60 (1264)
Q Consensus 7 ~~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~~ 60 (1264)
.++.+|||+|.|-|.+|++++++.+...+.. +| +-++. ..++++++++++
T Consensus 134 ~~~~LGID~GSTtTK~VLm~d~~~I~~~~~~-~t-~g~p~--~~~~l~~~le~l 183 (396)
T COG1924 134 GMYTLGIDSGSTTTKAVLMEDGKEILYGFYV-ST-KGRPI--AEKALKEALEEL 183 (396)
T ss_pred CcEEEEEecCCcceeEEEEeCCCeEEEEEEE-cC-CCChh--HHHHHHHHHHHc
Confidence 3689999999999999999655543334444 33 44443 568888888875
No 37
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=88.72 E-value=3 Score=53.55 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=40.6
Q ss_pred HHHHhhHHHHHHHHHhCCCCCCc-eEEEEcCchHHHH--HHHHHHcCCCEEEECCCCCccccccccc
Q 000831 465 ANETMCRPIRQLTEMKGHETRNH-ALACFGGAGPQHA--CAIARSLGMREVLIHRFCGILSAYGMGL 528 (1264)
Q Consensus 465 a~~~m~~~i~~~~~~~G~dpr~~-~lv~~GGag~~~a--~~~a~~Lgi~~vivP~~~~v~sA~G~~~ 528 (1264)
..+++...|++...+.|+.+.+. .++..||+.-+-. -.+.+.+|.+ +....+|.-+-|+|+++
T Consensus 305 l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~-~~~~~npdeava~GAa~ 370 (627)
T PRK00290 305 LVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKE-PNKGVNPDEVVAIGAAI 370 (627)
T ss_pred HHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCC-CCcCcCChHHHHHhHHH
Confidence 34566677777777778876654 4566677643322 3455566754 45566777788888876
No 38
>PRK13321 pantothenate kinase; Reviewed
Probab=88.57 E-value=0.89 Score=51.66 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=41.5
Q ss_pred EEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEEeh
Q 000831 9 LRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRMGT 83 (1264)
Q Consensus 9 ~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~i~~GT 83 (1264)
|.|+||+|||++-+.++++ ++++...|.||. ..+..+.+...++..+++. +.++++++.+.+|+
T Consensus 1 MiL~IDIGnT~ik~gl~~~-~~i~~~~~~~T~-~~~~~~~~~~~l~~l~~~~---------~~~~~~i~~i~vss 64 (256)
T PRK13321 1 MLLLIDVGNTNIKLGVFDG-DRLLRSFRLPTD-KSRTSDELGILLLSLFRHA---------GLDPEDIRAVVISS 64 (256)
T ss_pred CEEEEEECCCeEEEEEEEC-CEEEEEEEEecC-CCCCHHHHHHHHHHHHHHc---------CCChhhCCeEEEEe
Confidence 3589999999999999963 464455677552 2333455666677766652 23345677776665
No 39
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=88.44 E-value=0.43 Score=59.42 Aligned_cols=75 Identities=11% Similarity=0.110 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCchH--HHHHHHHHHcCCCEEEECCCCCccccccccccc
Q 000831 453 TVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGP--QHACAIARSLGMREVLIHRFCGILSAYGMGLAD 530 (1264)
Q Consensus 453 ~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag~--~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ad 530 (1264)
+.++.+.++++=..-.++..++.+....|..++ .|++.||+.- +..-.+|+.||.+ |.++..+. .+|+|+++.-
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~~~~--~i~~~GGga~s~~w~Qi~Adv~g~p-v~~~~~~e-~~a~GaA~la 446 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGDPLN--MIQATGGFASSEVWRQMMSDIFEQE-IVVPESYE-SSCLGACILG 446 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--EEEEecCcccCHHHHHHHHHHcCCe-eEecCCCC-cchHHHHHHH
Confidence 456666666655555666665555444465333 3556665432 2223578899988 67777654 6788887654
Q ss_pred e
Q 000831 531 V 531 (1264)
Q Consensus 531 ~ 531 (1264)
.
T Consensus 447 ~ 447 (505)
T TIGR01314 447 L 447 (505)
T ss_pred H
Confidence 3
No 40
>PRK10331 L-fuculokinase; Provisional
Probab=88.33 E-value=0.53 Score=58.08 Aligned_cols=82 Identities=16% Similarity=0.118 Sum_probs=50.0
Q ss_pred cEEEEEeccCccccEEEEecCCceEEEEEeccC----CCC-C-CC---ChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeE
Q 000831 8 KLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSV----DPT-N-YD---DAPVEGIRRILEEYTGEKIPRTSKIPTDKIEW 78 (1264)
Q Consensus 8 ~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st----~p~-d-~~---~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~ 78 (1264)
+|.||||+|.|++-++++|.+|+++...+.+.. .|. + .. +.+.+++.++++++.++ ....+|..
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~-------~~~~~I~~ 74 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSE-------LTECHIRG 74 (470)
T ss_pred ceEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHh-------CCccceEE
Confidence 478999999999999999988886555555421 111 0 01 22466777766665432 12346777
Q ss_pred EEEehhHHhhHhhhcCCC
Q 000831 79 IRMGTTVATNALLERKGE 96 (1264)
Q Consensus 79 i~~GTT~~tNAller~g~ 96 (1264)
|.++++..+=.++-++|.
T Consensus 75 I~is~~~~~~v~~D~~G~ 92 (470)
T PRK10331 75 ITVTTFGVDGALVDKQGN 92 (470)
T ss_pred EEEeccccceEEECCCcC
Confidence 777775544444444443
No 41
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=88.07 E-value=0.51 Score=58.82 Aligned_cols=88 Identities=23% Similarity=0.145 Sum_probs=56.6
Q ss_pred CCcEEEEEeccCccccEEEEecC-CceEEEEEecc--CCCCC-----CCChHHHHHHHHHHHhhCCCCCCCCCCCCCCee
Q 000831 6 EEKLRFCIDRGGTFTDVYAEIPG-QLEGQVLKLLS--VDPTN-----YDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIE 77 (1264)
Q Consensus 6 ~~~~~iGIDvGGTfTD~v~~~~~-g~~~~~~K~~s--t~p~d-----~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~ 77 (1264)
+++|.+|||+|.|.+-++++|.+ ++++...+... ++|++ -.+...+++..+++++.++ ..+++++|.
T Consensus 2 ~~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~-----~~~~~~~I~ 76 (502)
T COG1070 2 MMKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEE-----SKIDPDAIA 76 (502)
T ss_pred CccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHh-----cccChhhce
Confidence 35799999999999999999877 66555565432 11211 1244566666666666543 235677899
Q ss_pred EEEEehhHHhhHhhhcCCCcE
Q 000831 78 WIRMGTTVATNALLERKGERI 98 (1264)
Q Consensus 78 ~i~~GTT~~tNAller~g~~v 98 (1264)
.|.++|....=.+|-+++.++
T Consensus 77 aI~is~~~~g~vllD~~g~~L 97 (502)
T COG1070 77 AIGISGQGHGLVLLDANGEPL 97 (502)
T ss_pred EEEEeccccceEEECCCCCCc
Confidence 888888655445555555443
No 42
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=87.72 E-value=0.72 Score=55.10 Aligned_cols=72 Identities=15% Similarity=0.106 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCchHH---HHHHHHHHcCC----CEEEECCCCCccc
Q 000831 450 KDMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQ---HACAIARSLGM----REVLIHRFCGILS 522 (1264)
Q Consensus 450 ~gl~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag~~---~a~~~a~~Lgi----~~vivP~~~~v~s 522 (1264)
.|.+.++++.|+..-...+....++++. + .++- ++.-||- .. ....+.+.|+. .+|++|+++....
T Consensus 352 ~G~~reDIaAGL~~SIA~Rv~s~l~r~~---~--i~~~-VvftGGv-A~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~G 424 (432)
T TIGR02259 352 LGDKREDILAGLHRAIILRAISIISRSG---G--ITDQ-FTFTGGV-AKNEAAVKELRKLIKENYGEVQINIDPDSIYTG 424 (432)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhccc---C--CCCC-EEEECCc-cccHHHHHHHHHHHccccCCCeEecCCCccHHH
Confidence 4789999999999766666665544431 2 2222 3333432 22 23456667742 3599999999999
Q ss_pred cccccc
Q 000831 523 AYGMGL 528 (1264)
Q Consensus 523 A~G~~~ 528 (1264)
|+|+++
T Consensus 425 ALGAAL 430 (432)
T TIGR02259 425 ALGASE 430 (432)
T ss_pred HHHHHH
Confidence 999986
No 43
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=87.64 E-value=1.3 Score=42.12 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=33.4
Q ss_pred EEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHH
Q 000831 10 RFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEE 59 (1264)
Q Consensus 10 ~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~ 59 (1264)
.+|||+|||++=+.++|++|++....|.+++ .+ ...+.+.|.+.+++
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~--~~-~~~~~~~l~~~i~~ 49 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPR--TN-KEADAARLKKLIKK 49 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEe--cC-cchHHHHHHHHHHH
Confidence 5899999999999999878885556677543 22 23456666666654
No 44
>PRK13411 molecular chaperone DnaK; Provisional
Probab=87.59 E-value=3.1 Score=53.64 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=39.2
Q ss_pred HHhhHHHHHHHHHhCCCCCCc-eEEEEcCchHHHH--HHHHHHcCCCEEEECCCCCccccccccc
Q 000831 467 ETMCRPIRQLTEMKGHETRNH-ALACFGGAGPQHA--CAIARSLGMREVLIHRFCGILSAYGMGL 528 (1264)
Q Consensus 467 ~~m~~~i~~~~~~~G~dpr~~-~lv~~GGag~~~a--~~~a~~Lgi~~vivP~~~~v~sA~G~~~ 528 (1264)
+++...|++...+.|+++.+. .++..||+.-+-. -.+.+.+|.+.+....+|.-+-|+||++
T Consensus 308 ~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi 372 (653)
T PRK13411 308 EATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAI 372 (653)
T ss_pred HHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHH
Confidence 445566666666778877554 3667777643222 3455566655566667777788888876
No 45
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=87.46 E-value=0.55 Score=59.02 Aligned_cols=84 Identities=14% Similarity=0.098 Sum_probs=50.5
Q ss_pred EEEEeccCccccEEEEecCCceEEEEEe--ccCCCCC-----CCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEEe
Q 000831 10 RFCIDRGGTFTDVYAEIPGQLEGQVLKL--LSVDPTN-----YDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRMG 82 (1264)
Q Consensus 10 ~iGIDvGGTfTD~v~~~~~g~~~~~~K~--~st~p~d-----~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~i~~G 82 (1264)
.||||+|+|+|-++++|.+|+++...+. +...|.+ -++.+.+++.++++++.++ .++++++|..|-++
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~-----~~~~~~~I~~Igis 76 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAE-----SKVDPNSVKGIGFD 76 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHH-----cCCChhheEEEEec
Confidence 5899999999999999888886555442 2211211 1123456666666655432 23455678888888
Q ss_pred hhHHhhHhhhcCCCcEE
Q 000831 83 TTVATNALLERKGERIA 99 (1264)
Q Consensus 83 TT~~tNAller~g~~vg 99 (1264)
++ .+=.++.++|..+.
T Consensus 77 ~~-~s~v~~D~~g~pl~ 92 (541)
T TIGR01315 77 AT-CSLVVLTHDGEPLP 92 (541)
T ss_pred cc-ccceEEcCCCCeee
Confidence 75 33344455555543
No 46
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=87.40 E-value=3.9 Score=48.64 Aligned_cols=39 Identities=10% Similarity=0.013 Sum_probs=30.7
Q ss_pred eEEEEcCchHHHHHHHHHHcCCCEEEECCCCCccccccccc
Q 000831 488 ALACFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGL 528 (1264)
Q Consensus 488 ~lv~~GGag~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ 528 (1264)
.++..|||+.++...+-+.++ ++.++++|..+||-|...
T Consensus 294 ~IiL~GGGA~ll~~~lk~~f~--~~~~~~~p~~ANa~G~~~ 332 (344)
T PRK13917 294 RVIVTGGGANIFFDSLSHWYS--DVEKADESQFANVRGYYK 332 (344)
T ss_pred EEEEECCcHHHHHHHHHHHcC--CeEEcCChHHHHHHHHHH
Confidence 477888887777777777765 567889999999998754
No 47
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=87.20 E-value=3.1 Score=48.97 Aligned_cols=74 Identities=14% Similarity=0.186 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC-Cc---eEEEEcCch--HHHHHHHHHHcCCCEEEECCCCCcccccccc
Q 000831 454 VEDIALGFVNVANETMCRPIRQLTEMKGHETR-NH---ALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAYGMG 527 (1264)
Q Consensus 454 ~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr-~~---~lv~~GGag--~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~ 527 (1264)
.+++.+.+.. -...+...|+....+.+.+.+ +. .++..||+. |...-.+.++++++ |.++.+|..+-|.|++
T Consensus 245 ~~~~~e~i~~-~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~-v~~~~~P~~~va~Ga~ 322 (333)
T TIGR00904 245 SVEVREALQE-PVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLP-VIVADDPLLCVAKGTG 322 (333)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCC-ceecCChHHHHHHHHH
Confidence 3444433333 344566666666555444332 22 477778876 44456788889987 7888899999999998
Q ss_pred cc
Q 000831 528 LA 529 (1264)
Q Consensus 528 ~a 529 (1264)
..
T Consensus 323 ~~ 324 (333)
T TIGR00904 323 KA 324 (333)
T ss_pred HH
Confidence 76
No 48
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=86.78 E-value=1.2 Score=51.65 Aligned_cols=55 Identities=20% Similarity=0.085 Sum_probs=38.7
Q ss_pred CCcEEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHhh
Q 000831 6 EEKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYT 61 (1264)
Q Consensus 6 ~~~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~~~ 61 (1264)
+.++.+|||+|||++.++++|.+|+++...+.++. ..+....+.+.|...++++.
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~-~~~~~~~~~~~i~~~i~~~~ 58 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTP-TPDPEEAILEAILALVAELL 58 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecC-CCCchhHHHHHHHHHHHHHH
Confidence 45789999999999999999887884455555442 22333466777777776653
No 49
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=86.78 E-value=2.1 Score=48.31 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=22.0
Q ss_pred HHHHHHhccccCCCCCEEEEecCCCceEeeeec-ccc
Q 000831 298 VVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA-GSY 333 (1264)
Q Consensus 298 v~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~-G~~ 333 (1264)
..|+.++. +..+. ++||||..|.+..++ |++
T Consensus 82 ~~g~~~~~----~~~~~-vidiGgqd~k~i~~~~g~~ 113 (248)
T TIGR00241 82 GKGANYLA----PEARG-VIDIGGQDSKVIKIDDGKV 113 (248)
T ss_pred HHHHHHHC----CCCCE-EEEecCCeeEEEEECCCcE
Confidence 46777775 22344 799999999998885 543
No 50
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=86.41 E-value=1.3 Score=56.22 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=39.1
Q ss_pred HHhhHHHHHHHHHhCCCCCCceEEEEcCch---HHHHHHHHHHcCCCEEEECCCCCccccccccc
Q 000831 467 ETMCRPIRQLTEMKGHETRNHALACFGGAG---PQHACAIARSLGMREVLIHRFCGILSAYGMGL 528 (1264)
Q Consensus 467 ~~m~~~i~~~~~~~G~dpr~~~lv~~GGag---~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ 528 (1264)
......++..+...|+++.+...+..-||. |..--.+.+.+| +....-.+|.-.-|+|+++
T Consensus 290 ~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~ 353 (579)
T COG0443 290 ERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAI 353 (579)
T ss_pred HHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHH
Confidence 344455667777888888888777666653 222234556667 5555556777777777765
No 51
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=86.17 E-value=9.5 Score=48.96 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCc-eEEEEcCchHH--HHHHHHHHcCCCEEEECCCCCccccccccc
Q 000831 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNH-ALACFGGAGPQ--HACAIARSLGMREVLIHRFCGILSAYGMGL 528 (1264)
Q Consensus 452 l~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~-~lv~~GGag~~--~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ 528 (1264)
++.++...- ++-..+++...+++...+.|+.+.+. .++..||+.-+ .--.+.+.+|.+ ++...+|.-+-|+||++
T Consensus 295 itr~efe~l-~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~-~~~~~npdeaVA~GAAi 372 (616)
T PRK05183 295 ITREQFNAL-IAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRT-PLTSIDPDKVVAIGAAI 372 (616)
T ss_pred EcHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccC-cCcCCCchHHHHHHHHH
Confidence 454444322 22334556667777777778776543 46667776433 234566667754 44566778888888875
No 52
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=85.89 E-value=0.84 Score=57.32 Aligned_cols=74 Identities=14% Similarity=0.057 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCc---hHHHHHHHHHHcCCCEEEECCCCCccccccccc
Q 000831 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGA---GPQHACAIARSLGMREVLIHRFCGILSAYGMGL 528 (1264)
Q Consensus 452 l~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGa---g~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ 528 (1264)
.+..+.+.+|++=..-+|...++.+- +.|.+++. |++.||+ -+...-.+|+.+|++ |.++.... .+|+|+++
T Consensus 405 ~~~~~~~RAvlEgia~~~~~~l~~l~-~~g~~~~~--i~~~GGg~a~s~~w~Qi~Adv~g~p-V~~~~~~e-~~a~GaA~ 479 (536)
T TIGR01234 405 TDAPLLYRALIEATAFGTRMIMETFT-DSGVPVEE--LMAAGGIARKNPVIMQIYADVTNRP-LQIVASDQ-APALGAAI 479 (536)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCcce--EEEeCCccccCHHHHHHHHHhhCCe-eEeccCCc-chhHHHHH
Confidence 45677788888666677777777664 35776653 5555554 234445789999988 77777644 66889877
Q ss_pred cc
Q 000831 529 AD 530 (1264)
Q Consensus 529 ad 530 (1264)
.-
T Consensus 480 lA 481 (536)
T TIGR01234 480 FA 481 (536)
T ss_pred HH
Confidence 53
No 53
>PRK04123 ribulokinase; Provisional
Probab=85.74 E-value=0.9 Score=57.20 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCc---hHHHHHHHHHHcCCCEEEECCCCCcccccccccc
Q 000831 453 TVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGA---GPQHACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1264)
Q Consensus 453 ~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGa---g~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~a 529 (1264)
+.++...++++=..-++...++.+.. .|..++. |++.||+ -++..-.+|+.+|++ |.++... -.+|+|+++.
T Consensus 409 ~~~~l~RAvlEgia~~~~~~~e~l~~-~g~~~~~--i~~~GGg~s~s~~w~Qi~ADv~g~p-V~~~~~~-e~~alGaA~l 483 (548)
T PRK04123 409 DAPDIYRALIEATAFGTRAIMECFED-QGVPVEE--VIAAGGIARKNPVLMQIYADVLNRP-IQVVASD-QCPALGAAIF 483 (548)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcce--EEEeCCCcccCHHHHHHHHHhcCCc-eEecCcc-ccchHHHHHH
Confidence 45666767776666666666666543 5665543 5666665 456667889999988 6677654 3668888765
Q ss_pred c
Q 000831 530 D 530 (1264)
Q Consensus 530 d 530 (1264)
-
T Consensus 484 A 484 (548)
T PRK04123 484 A 484 (548)
T ss_pred H
Confidence 3
No 54
>PRK13317 pantothenate kinase; Provisional
Probab=85.61 E-value=1.4 Score=50.86 Aligned_cols=74 Identities=19% Similarity=0.140 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCchHHHHH----HHHHHcC--CCEEEECCCCCccccc
Q 000831 451 DMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQHAC----AIARSLG--MREVLIHRFCGILSAY 524 (1264)
Q Consensus 451 gl~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag~~~a~----~~a~~Lg--i~~vivP~~~~v~sA~ 524 (1264)
|.+.|++|.+++..+..++...-...+...+.+ . +.|.|++-.+-+ .+.+.|. =.++++|++++.+-|+
T Consensus 192 g~~~eDIaasl~~~v~~~I~~lA~~~ar~~~~~----~-Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAl 266 (277)
T PRK13317 192 EFTSSDILAGVIGLVGEVITTLSIQAAREKNIE----N-IVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAI 266 (277)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----e-EEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHH
Confidence 578999999999888888777655555544442 2 555554333323 3556562 2458999999999999
Q ss_pred ccccc
Q 000831 525 GMGLA 529 (1264)
Q Consensus 525 G~~~a 529 (1264)
|+++.
T Consensus 267 GAaL~ 271 (277)
T PRK13317 267 GALLL 271 (277)
T ss_pred HHHHH
Confidence 99975
No 55
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=85.27 E-value=11 Score=48.75 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=37.3
Q ss_pred HHhhHHHHHHHHHhCCCCCCc-eEEEEcCchHHHH--HHHHHHcCCCEEEECCCCCccccccccc
Q 000831 467 ETMCRPIRQLTEMKGHETRNH-ALACFGGAGPQHA--CAIARSLGMREVLIHRFCGILSAYGMGL 528 (1264)
Q Consensus 467 ~~m~~~i~~~~~~~G~dpr~~-~lv~~GGag~~~a--~~~a~~Lgi~~vivP~~~~v~sA~G~~~ 528 (1264)
+.+...+++.....|+++.+. .++.+||+.-+-. -.+.+.+|.+ .+..-+|.-+-|+||++
T Consensus 334 ~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~-~~~~~nPdeaVA~GAAi 397 (657)
T PTZ00186 334 ERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKD-PFRGVNPDEAVALGAAT 397 (657)
T ss_pred HHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCC-ccccCCCchHHHHhHHH
Confidence 444456666666777776654 3566677643322 3566666754 34556777788888774
No 56
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=85.17 E-value=2 Score=53.01 Aligned_cols=80 Identities=14% Similarity=0.049 Sum_probs=51.0
Q ss_pred EEEEEeccCccccEEEEecCCceEEEEEeccC----CCCC-----CCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEE
Q 000831 9 LRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSV----DPTN-----YDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWI 79 (1264)
Q Consensus 9 ~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st----~p~d-----~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~i 79 (1264)
+.+|||+|.|.+-++++|.+|+++...+.+-. .|.+ -++...+++.++++++.. ++.+++|..|
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~-------~~~~~~I~aI 74 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINS-------ELTEKHIRGI 74 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHh-------hcChhceEEE
Confidence 57999999999999999988886655554311 1111 012357777888877642 1334568888
Q ss_pred EEehhHHhhHhhhcCC
Q 000831 80 RMGTTVATNALLERKG 95 (1264)
Q Consensus 80 ~~GTT~~tNAller~g 95 (1264)
.+++...+..++-++|
T Consensus 75 ~~s~~~~~~v~~D~~G 90 (465)
T TIGR02628 75 AVTTFGVDGAPFDKQG 90 (465)
T ss_pred EEeccccceEEECCCC
Confidence 8877555544444433
No 57
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.65 E-value=26 Score=41.20 Aligned_cols=244 Identities=16% Similarity=0.114 Sum_probs=136.5
Q ss_pred CHHHHHHHHHHHH-HCCCC----------EEEEEecCCCCCcHHHHHHHHHHHhc-----CC--ccEEEeecccCcCCcc
Q 000831 172 NEKTLEPLLKGLL-EKGIS----------CLAVVLMHSYTFPQHEMAVEKLALGL-----GF--RHVSLSSALTPMVRAV 233 (1264)
Q Consensus 172 de~~v~~~~~~l~-~~gv~----------avaV~~l~S~~np~hE~~v~ei~~~~-----~~--~~VtlS~ei~p~~~e~ 233 (1264)
|.++|-++++++. +.|+. +.+|+=.-.+-..-.|+..+.-++.+ ++ ..|++-.++. ..-+-
T Consensus 56 d~~av~~~Lk~ala~~gi~~k~aa~AVP~s~aitk~i~vp~~lde~eL~~~V~~ea~~y~PyP~EEv~lDy~vl-g~~~~ 134 (354)
T COG4972 56 DYDAVASALKRALAKLGIKSKNAATAVPGSAAITKTIPVPDELDEKELEDQVESEASRYIPYPLEEVNLDYQVL-GPSAN 134 (354)
T ss_pred cHHHHHHHHHHHHHhcCcchhhhhhhcCccceeeEEeccCCcccHHHHHHHHHHHHhhcCCCchhhcccceEEe-ccccC
Confidence 6788888888754 45654 34445444444444555555444432 22 2266666654 22222
Q ss_pred cc-hhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceEEEEEcCCCccccccccccceecccchhHHHHHHHhccccCCCC
Q 000831 234 PR-GLTASVDAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFGLETEK 312 (1264)
Q Consensus 234 eR-~~ttvlNAyl~p~~~~~l~~l~~~l~~~~~~~~l~i~~sdGG~~s~~~~~pv~ti~SGPaagv~Ga~~l~~~~~g~~ 312 (1264)
++ .....+=|.-+..+..+++.|+.+ |+...++ .++...-.+++- .....+.. + ...-
T Consensus 135 ~~e~v~Vll~AtrkE~v~~ri~a~~~A----Gl~~~vl---------DV~~fAl~ra~~------~~~~~~~~-~-~a~~ 193 (354)
T COG4972 135 EPEKVQVLLVATRKEVVESRIDAFELA----GLEPKVL---------DVESFALLRAYR------LLASQFGP-E-EAAM 193 (354)
T ss_pred CCccEEEEEEEeehhhhHHHHHHHHHc----CCCceEE---------ehHHHHHHHHHH------HHHHHhCC-c-hhhh
Confidence 32 234466788888889988888765 5543332 232221111110 11111211 1 1112
Q ss_pred CEEEEecCCCceEeeeec-cccceeeeeEEccEEEeecceeeEEEeccCCcEEEEeCCeEEEcccccccCCCcceeccCC
Q 000831 313 PLIGFDMGGTSTDVSRYA-GSYEQVLETQIAGAIIQAPQLDINTVAAGGGSNLMFQLGAFRVGPESVGAHPGPVCYRKGG 391 (1264)
Q Consensus 313 ~~I~~DmGGTStDv~li~-G~~~~~~~~~i~g~~~~~p~~dv~sIGaGGGSi~~v~~g~l~VGP~SaGa~PGpacy~~GG 391 (1264)
.+.++|||.|+|-++++. |++.++++..+++..
T Consensus 194 ~vav~~Igat~s~l~vi~~gk~ly~r~~~~g~~Q---------------------------------------------- 227 (354)
T COG4972 194 KVAVFDIGATSSELLVIQDGKILYTREVPVGTDQ---------------------------------------------- 227 (354)
T ss_pred hheeeeecccceEEEEEECCeeeeEeeccCcHHH----------------------------------------------
Confidence 256899999999999996 999777653332211
Q ss_pred CccHhHHHHHcCccCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCCCCCCCHHHHHHHHHHHHHHHhhH
Q 000831 392 DLAVTDANLILGFVIPDYFPSIFGPNEDQPLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANETMCR 471 (1264)
Q Consensus 392 ~~TvTDA~l~lG~l~p~~fl~~~g~~g~~~ld~~~a~~a~~~la~~lg~~~~~~~~~~~gl~~eeaA~~i~~~a~~~m~~ 471 (1264)
.|++.- -.+.||.++|..+.+....+- | -..++..-++.-....+.+
T Consensus 228 ---lt~~i~-----------------r~~~L~~~~a~~~k~~~~~P~--------~-----y~~~vl~~f~~~l~~ei~R 274 (354)
T COG4972 228 ---LTQEIQ-----------------RAYSLTEEKAEEIKRGGTLPT--------D-----YGSEVLRPFLGELTQEIRR 274 (354)
T ss_pred ---HHHHHH-----------------HHhCCChhHhHHHHhCCCCCC--------c-----hhHHHHHHHHHHHHHHHHH
Confidence 222111 123466666665554311111 0 1356677777777778888
Q ss_pred HHHHHHHHhCCCCCCceEEEEcCchHH-HHHHHHHHcCCCEEEECC
Q 000831 472 PIRQLTEMKGHETRNHALACFGGAGPQ-HACAIARSLGMREVLIHR 516 (1264)
Q Consensus 472 ~i~~~~~~~G~dpr~~~lv~~GGag~~-~a~~~a~~Lgi~~vivP~ 516 (1264)
.|.-.....+..-=+..+++.|||+-. ++..+.+.|+++..++-|
T Consensus 275 slqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~vanP 320 (354)
T COG4972 275 SLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPTEVANP 320 (354)
T ss_pred HHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCeEeeCH
Confidence 888777777766666666666665432 346789999999877655
No 58
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=83.64 E-value=1.2 Score=55.53 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCch--HHHHHHHHHHcCCCEEEECCCCCcccccccccc
Q 000831 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1264)
Q Consensus 452 l~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag--~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~a 529 (1264)
.+.++.+.+|++=..-++...++.+....|..++. |.+.||+. +...-.+|+.+|.+ |.++..+. .+|+|+++.
T Consensus 375 ~~~~~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~--i~~~GG~a~s~~w~Qi~Adv~g~p-V~~~~~~e-~~alGaAl~ 450 (504)
T PTZ00294 375 TTRAHIVRAALEAIALQTNDVIESMEKDAGIELNS--LRVDGGLTKNKLLMQFQADILGKD-IVVPEMAE-TTALGAALL 450 (504)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcce--EEEecccccCHHHHHHHHHHhCCc-eEecCccc-chHHHHHHH
Confidence 45677777777777777777776665444765443 44444442 12223578899998 77777655 679998875
Q ss_pred c
Q 000831 530 D 530 (1264)
Q Consensus 530 d 530 (1264)
-
T Consensus 451 a 451 (504)
T PTZ00294 451 A 451 (504)
T ss_pred H
Confidence 3
No 59
>PLN02295 glycerol kinase
Probab=83.39 E-value=1.1 Score=55.89 Aligned_cols=73 Identities=16% Similarity=0.023 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHH-----hCCCCCCceEEEEcCch--HHHHHHHHHHcCCCEEEECCCCCccccc
Q 000831 452 MTVEDIALGFVNVANETMCRPIRQLTEM-----KGHETRNHALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAY 524 (1264)
Q Consensus 452 l~~eeaA~~i~~~a~~~m~~~i~~~~~~-----~G~dpr~~~lv~~GGag--~~~a~~~a~~Lgi~~vivP~~~~v~sA~ 524 (1264)
.+.++.+.++++=..-++...++.+... .|..++ .|.+.||+. ++..-.+|+.+|.+ |++|... -.+|+
T Consensus 376 ~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~--~i~~~GGga~s~~w~Qi~ADv~g~p-V~~~~~~-e~~al 451 (512)
T PLN02295 376 TNKAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLF--LLRVDGGATANNLLMQIQADLLGSP-VVRPADI-ETTAL 451 (512)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcc--eEEEeccchhCHHHHHHHHHhcCCc-eEecCcc-ccHHH
Confidence 3567777777776666776666666433 133444 344555542 22234578899998 6777754 46788
Q ss_pred cccc
Q 000831 525 GMGL 528 (1264)
Q Consensus 525 G~~~ 528 (1264)
|+++
T Consensus 452 GaA~ 455 (512)
T PLN02295 452 GAAY 455 (512)
T ss_pred HHHH
Confidence 8876
No 60
>PRK15027 xylulokinase; Provisional
Probab=83.33 E-value=1 Score=55.76 Aligned_cols=72 Identities=8% Similarity=-0.020 Sum_probs=46.9
Q ss_pred EEEEEeccCccccEEEEecCCceEEEEEeccC--CCCC--C---CChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEE
Q 000831 9 LRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSV--DPTN--Y---DDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRM 81 (1264)
Q Consensus 9 ~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st--~p~d--~---~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~i~~ 81 (1264)
+.||||+|.|.+-++++|.+|+++...+.+.. .|.+ . ++...+++.++++++.++ ...++|..|.+
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~-------~~~~~I~aI~i 73 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQ-------HSLQDVKALGI 73 (484)
T ss_pred CEEEEEecccceEEEEEcCCCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHh-------CCccceeEEEE
Confidence 46899999999999999988886655544321 1211 1 223567777777776532 23456888877
Q ss_pred ehhHHh
Q 000831 82 GTTVAT 87 (1264)
Q Consensus 82 GTT~~t 87 (1264)
+++..+
T Consensus 74 s~q~~~ 79 (484)
T PRK15027 74 AGQMHG 79 (484)
T ss_pred ecCCCc
Confidence 765433
No 61
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=81.30 E-value=3.9 Score=47.72 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=29.5
Q ss_pred EEEEcCchHHHH--HHHHHHcCCCEEEECCCCCccccccccc
Q 000831 489 LACFGGAGPQHA--CAIARSLGMREVLIHRFCGILSAYGMGL 528 (1264)
Q Consensus 489 lv~~GGag~~~a--~~~a~~Lgi~~vivP~~~~v~sA~G~~~ 528 (1264)
++.+||++.+.. -.+.++.+++ |++-+.|=.+-|.|...
T Consensus 287 ivltGGGalLrglD~~i~~et~~p-v~ia~~pL~~Va~G~G~ 327 (342)
T COG1077 287 IVLTGGGALLRGLDRLLSEETGVP-VIIADDPLTCVAKGTGK 327 (342)
T ss_pred eEEecchHHhcCchHhHHhccCCe-EEECCChHHHHHhccch
Confidence 789999988877 4788899999 67767776666666543
No 62
>PLN02669 xylulokinase
Probab=81.03 E-value=5 Score=50.79 Aligned_cols=78 Identities=15% Similarity=-0.003 Sum_probs=53.6
Q ss_pred CCCCCCcEEEEEeccCccccEEEEecCCceEEEEEeccC--CCC---------CCCC---------hHHHHHHHHHHHhh
Q 000831 2 GSVKEEKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSV--DPT---------NYDD---------APVEGIRRILEEYT 61 (1264)
Q Consensus 2 ~~~~~~~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st--~p~---------d~~~---------~v~~gi~~~l~~~~ 61 (1264)
.++-+..|.||||+|.|.+-++++|.+|+++..++++.. .|+ |+.. -.++++..+++++.
T Consensus 2 ~~~~~~~~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~ 81 (556)
T PLN02669 2 LSLPEDSLFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA 81 (556)
T ss_pred CCCCCCCeEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH
Confidence 456677899999999999999999988887777776421 011 2211 34488888888775
Q ss_pred CCCCCCCCCCCCCCeeEEEEehhH
Q 000831 62 GEKIPRTSKIPTDKIEWIRMGTTV 85 (1264)
Q Consensus 62 ~~~~~~~~~~~~~~i~~i~~GTT~ 85 (1264)
+ .++++++|..|..++.+
T Consensus 82 ~------~~~~~~~I~aIs~s~Q~ 99 (556)
T PLN02669 82 K------EKFPFHKVVAISGSGQQ 99 (556)
T ss_pred H------cCCChhhEEEEEecCCc
Confidence 3 23456678777766533
No 63
>PRK09698 D-allose kinase; Provisional
Probab=78.77 E-value=5.4 Score=46.05 Aligned_cols=53 Identities=21% Similarity=0.212 Sum_probs=34.4
Q ss_pred CCcEEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHh
Q 000831 6 EEKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEY 60 (1264)
Q Consensus 6 ~~~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~~ 60 (1264)
+..+.+|||+|||++.++++|.+|+++...+.++. +....+ .++-+...++++
T Consensus 2 ~~~~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~-~~~~~~-~~~~l~~~i~~~ 54 (302)
T PRK09698 2 QKNVVLGIDMGGTHIRFCLVDAEGEILHCEKKRTA-EVIAPD-LVSGLGEMIDEY 54 (302)
T ss_pred CccEEEEEEcCCcEEEEEEEcCCCCEEEEEEeCCc-cccchH-HHHHHHHHHHHH
Confidence 45689999999999999999877885555566542 222222 244444444443
No 64
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=78.10 E-value=2.1 Score=50.61 Aligned_cols=38 Identities=29% Similarity=0.545 Sum_probs=27.9
Q ss_pred ecccchhHHHHHHHhccccCCCCCEEEEecCCCceEeeee
Q 000831 290 VLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRY 329 (1264)
Q Consensus 290 i~SGPaagv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li 329 (1264)
|.--|+|..++... - ...|++|++++|.||-|||||++
T Consensus 205 IiNePTaAAIAYGL-D-Kk~gEknilVfDLGGGTFDVSlL 242 (663)
T KOG0100|consen 205 IINEPTAAAIAYGL-D-KKDGEKNILVFDLGGGTFDVSLL 242 (663)
T ss_pred eecCccHHHHHhcc-c-ccCCcceEEEEEcCCceEEEEEE
Confidence 34467765554332 1 24588999999999999999987
No 65
>PRK09557 fructokinase; Reviewed
Probab=77.65 E-value=3.8 Score=47.40 Aligned_cols=49 Identities=27% Similarity=0.280 Sum_probs=32.7
Q ss_pred EEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHH
Q 000831 9 LRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEE 59 (1264)
Q Consensus 9 ~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~ 59 (1264)
|+||||+|||++-++++|.+|+++...+.++ |....+.+.+.|.+.+++
T Consensus 1 ~~lgidig~t~~~~~l~d~~g~i~~~~~~~~--~~~~~~~~~~~i~~~i~~ 49 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDAGEELFRKRLPT--PRDDYQQTIEAIATLVDM 49 (301)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecC--CCCCHHHHHHHHHHHHHH
Confidence 5799999999999999987788555555543 322233455555555544
No 66
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=77.00 E-value=4 Score=46.24 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=33.8
Q ss_pred EEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHH
Q 000831 9 LRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEE 59 (1264)
Q Consensus 9 ~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~ 59 (1264)
|.+|||+|||++-+.++|.+|+++...|.++ |......+++.+.+.++.
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~i~~~~~~~~--~~~~~~~~~~~i~~~i~~ 49 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQRIWHKRVPT--PREDYPQLLQILRDLTEE 49 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecC--CCcCHHHHHHHHHHHHHH
Confidence 4699999999999999987788555566643 322234456666666554
No 67
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=76.67 E-value=5 Score=48.45 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=19.1
Q ss_pred eecccchhHHHHHHHhccccCCCCCEEEEecCCCceEe
Q 000831 289 AVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDV 326 (1264)
Q Consensus 289 ti~SGPaagv~Ga~~l~~~~~g~~~~I~~DmGGTStDv 326 (1264)
.+.+=-++-..||.+|. ... .+.-.++||||=-+.+
T Consensus 220 ~iv~EItaha~GA~~L~-p~~-~~v~TIIDIGGQDsK~ 255 (404)
T TIGR03286 220 LIQEELTVNSKGAVYLA-DKQ-EGPATVIDIGGMDNKA 255 (404)
T ss_pred ceEEEEhhHHHHHHHhc-ccC-CCCcEEEEeCCCceEE
Confidence 33444556677777775 111 1134667777744443
No 68
>PRK13317 pantothenate kinase; Provisional
Probab=75.77 E-value=2.6 Score=48.66 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=22.4
Q ss_pred cEEEEEeccCccccEEEEecCCceEEEEEe
Q 000831 8 KLRFCIDRGGTFTDVYAEIPGQLEGQVLKL 37 (1264)
Q Consensus 8 ~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~ 37 (1264)
+|+||||+|||.|-+|++|++++ ...|.
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~~~--~~~~~ 29 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEKKQ--RTFKT 29 (277)
T ss_pred CceEEEEeCcccEEEEEEcCCCe--EEEEe
Confidence 58999999999999999976554 34444
No 69
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=75.24 E-value=5.6 Score=51.19 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=34.5
Q ss_pred cEEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHH
Q 000831 8 KLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEE 59 (1264)
Q Consensus 8 ~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~ 59 (1264)
.|.||||+|||++=+-++|++|+++...|.+|. + .+.+.+.|+..+++
T Consensus 18 ~~~L~iDIGGT~ir~al~~~~g~i~~~~~~~t~---~-~~~~~~~i~~~l~~ 65 (638)
T PRK14101 18 GPRLLADVGGTNARFALETGPGEITQIRVYPGA---D-YPTLTDAIRKYLKD 65 (638)
T ss_pred CCEEEEEcCchhheeeeecCCCcccceeEEecC---C-CCCHHHHHHHHHHh
Confidence 579999999999999999777775556677552 1 24566666666543
No 70
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=74.73 E-value=33 Score=40.38 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.0
Q ss_pred CEEEEecCCCceEeeeec-cccce
Q 000831 313 PLIGFDMGGTSTDVSRYA-GSYEQ 335 (1264)
Q Consensus 313 ~~I~~DmGGTStDv~li~-G~~~~ 335 (1264)
+++++|||+.||+++++. |.+..
T Consensus 189 ~~~lvdiG~~~t~l~i~~~g~~~~ 212 (348)
T TIGR01175 189 DAALVDIGATSSTLNLLHPGRMLF 212 (348)
T ss_pred eEEEEEECCCcEEEEEEECCeEEE
Confidence 499999999999999996 87744
No 71
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=72.79 E-value=5.6 Score=46.04 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=33.5
Q ss_pred EEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHH
Q 000831 9 LRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEE 59 (1264)
Q Consensus 9 ~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~ 59 (1264)
|.+|||+|||++-++++|.+|+++...+.++ |.+..+.+++.|.+.+++
T Consensus 1 ~~lgidig~t~i~~~l~d~~g~i~~~~~~~~--~~~~~~~~~~~i~~~i~~ 49 (303)
T PRK13310 1 MYYGFDIGGTKIELGVFNEKLELQWEERVPT--PRDSYDAFLDAVCELVAE 49 (303)
T ss_pred CeEEEEeCCCcEEEEEECCCCcEEEEEEecC--CCcCHHHHHHHHHHHHHH
Confidence 3599999999999999987788555556543 333344555556555554
No 72
>TIGR02851 spore_V_T stage V sporulation protein T. Members of this protein family are the stage V sporulation protein T (SpoVT), a protein of the sporulation/germination program in Bacillus subtilis and related species. The amino-terminal 50 amino acids are nearly perfectly conserved across all endospore-forming bacteria. SpoVT is a DNA-binding transcriptional regulator related to AbrB (See PFAM model pfam04014).
Probab=72.50 E-value=24 Score=38.28 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhhcccchhccccccceeeCCCCCeeeecCCCceeeccchHHHHHHHHHccCCCCCCcEEEecCC--
Q 000831 746 FMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVPVHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHP-- 823 (1264)
Q Consensus 746 L~ai~~Em~~~l~RtA~Spii~e~~D~s~aI~d~~G~lva~~~~ip~h~gs~~~~v~~il~~~~~~l~pGDv~i~NDP-- 823 (1264)
|...+.+++..|. +.-+++.+|+|.+-=+.+.+.+---|.+. + +...+++. |+.|++++.++-
T Consensus 54 ~~~~A~~~aeII~---------~~t~~aVaITDr~~ILA~~G~g~d~~~~~-~--is~~t~~~---i~~gk~~~~~~~~~ 118 (180)
T TIGR02851 54 LGDFAKEYAESLY---------QSLGHIVLITDRDTVIAVAGVSKKEYLNK-P--ISDELEDT---MEERKTVILSDTKD 118 (180)
T ss_pred hHHHHHHHHHHHH---------HHhCCEEEEECCCcEEEEECCChhhcCCC-c--cCHHHHHH---HHcCCEEEecCCcc
Confidence 4455666666554 45667999999987777677666666655 2 33444432 677888766654
Q ss_pred -CCCCC-CC---CCeEEEEeeeeCCeEEEE
Q 000831 824 -CAGGS-HL---PDITVITPVFDNGKLVFF 848 (1264)
Q Consensus 824 -y~Gg~-Hl---~Dv~~~~PVF~~Gelv~~ 848 (1264)
|.+.. |. --..++.|++.+|+.+|-
T Consensus 119 ~~i~c~~~~~~~l~s~ii~Pl~~~g~viGt 148 (180)
T TIGR02851 119 GPIEIIDGQEFEYTSQVIAPIIAEGDPIGA 148 (180)
T ss_pred ceeccccCCCCCcceEEEEEEEECCeEEEE
Confidence 35555 22 248899999999998774
No 73
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=71.45 E-value=5.9 Score=46.07 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=30.2
Q ss_pred cEEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHH
Q 000831 8 KLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEE 59 (1264)
Q Consensus 8 ~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~ 59 (1264)
+|.+|||+|.|.|-+|++| +++ +.......| -.++.+...+.++.++++
T Consensus 32 m~~~GIDiGStt~K~Vlld-~~~-i~~~~~~~t-g~~~~~~a~~~l~~~l~~ 80 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVC-DGE-LYGYNSMRT-GNNSPDSAKNALQGIMDK 80 (293)
T ss_pred cEEEEEEeCchhEEEEEEe-CCE-EEEEEeecC-CCCHHHHHHHHHHHHHHH
Confidence 5889999999999999997 456 443333332 233334444444444444
No 74
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=69.03 E-value=7 Score=48.21 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCchH--HHHHHHHHHcCCCEEEECCCCCcccccccccc
Q 000831 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGP--QHACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1264)
Q Consensus 452 l~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag~--~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~a 529 (1264)
.+.++.+.++++=..-+++..++.+....|..++ .+++.||+.- ...-.+|+.+|.+ |.++.. .-.+|+|+++.
T Consensus 359 ~~~~~l~railEgia~~~~~~~~~l~~~~~~~~~--~i~~~GG~s~s~~~~Q~~Adv~g~p-v~~~~~-~e~~a~GaA~~ 434 (481)
T TIGR01312 359 TTRADLTRAVLEGVTFALRDSLDILREAGGIPIQ--SIRLIGGGAKSPAWRQMLADIFGTP-VDVPEG-EEGPALGAAIL 434 (481)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--eEEEeccccCCHHHHHHHHHHhCCc-eeecCC-CcchHHHHHHH
Confidence 3466666677666666666666555432345443 4566666532 2224578899987 777774 44778888765
Q ss_pred c
Q 000831 530 D 530 (1264)
Q Consensus 530 d 530 (1264)
-
T Consensus 435 a 435 (481)
T TIGR01312 435 A 435 (481)
T ss_pred H
Confidence 4
No 75
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=69.00 E-value=10 Score=44.13 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=32.0
Q ss_pred EEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHhh
Q 000831 11 FCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYT 61 (1264)
Q Consensus 11 iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~~~ 61 (1264)
||||+|+|++.++++|..|+++...+.++ +.+ .+.+++-|.++++++.
T Consensus 1 lgidig~t~~~~~l~d~~g~i~~~~~~~~--~~~-~~~~~~~l~~~i~~~~ 48 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNILSKWKVPT--DTT-PETIVDAIASAVDSFI 48 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCEEEEEEeCC--CCC-HHHHHHHHHHHHHHHH
Confidence 69999999999999987788554555543 222 3445566666665543
No 76
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=66.39 E-value=9.4 Score=45.14 Aligned_cols=61 Identities=16% Similarity=0.020 Sum_probs=37.4
Q ss_pred HhhHHHHHHHHHhCCCCC--Cc--eEEEEcCchHH--HHHHHHHHcCCCEEEECCCCCcccccccccc
Q 000831 468 TMCRPIRQLTEMKGHETR--NH--ALACFGGAGPQ--HACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1264)
Q Consensus 468 ~m~~~i~~~~~~~G~dpr--~~--~lv~~GGag~~--~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~a 529 (1264)
++...|++...+.+.+.+ .+ .++..||+.-+ ..-.+.++++++ |.+..+|--.-|.|++..
T Consensus 257 ~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~-v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 257 HILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVP-VHVAANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCC-ceeCCCHHHHHHHHHHHH
Confidence 344555555555444332 12 26666776432 234677888987 567778888888888765
No 77
>PRK00292 glk glucokinase; Provisional
Probab=65.51 E-value=13 Score=43.53 Aligned_cols=47 Identities=19% Similarity=0.080 Sum_probs=30.0
Q ss_pred cEEEEEeccCccccEEEEe-cCCceEEEEEeccCCCCCCCChHHHHHHHHHH
Q 000831 8 KLRFCIDRGGTFTDVYAEI-PGQLEGQVLKLLSVDPTNYDDAPVEGIRRILE 58 (1264)
Q Consensus 8 ~~~iGIDvGGTfTD~v~~~-~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~ 58 (1264)
.+.||||+|||++-+.++| .++.++...|.++ + + .+.+.+.|.+.++
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~--~-~-~~~~~~~l~~~l~ 49 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWANGEIEQIKTYAT--A-D-YPSLEDAIRAYLA 49 (316)
T ss_pred ceEEEEEcCccceEEEEEecCCCceeeeEEEec--C-C-CCCHHHHHHHHHH
Confidence 3679999999999999997 4555344455543 2 1 2335555555443
No 78
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=65.13 E-value=13 Score=44.47 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=20.0
Q ss_pred CCCEEEEecCCCceEeeeec-cccc
Q 000831 311 EKPLIGFDMGGTSTDVSRYA-GSYE 334 (1264)
Q Consensus 311 ~~~~I~~DmGGTStDv~li~-G~~~ 334 (1264)
...++++||||.|||++++. |.+.
T Consensus 195 ~~~~~vvDiG~gtt~i~i~~~g~~~ 219 (371)
T TIGR01174 195 ELGVCLIDIGGGTTDIAVYTGGSIR 219 (371)
T ss_pred cCCEEEEEeCCCcEEEEEEECCEEE
Confidence 34689999999999999995 6553
No 79
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=64.62 E-value=6.5 Score=45.49 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCc----hHHHHHHHHHHcC--CCEEEECCCCCccccc
Q 000831 451 DMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGA----GPQHACAIARSLG--MREVLIHRFCGILSAY 524 (1264)
Q Consensus 451 gl~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGa----g~~~a~~~a~~Lg--i~~vivP~~~~v~sA~ 524 (1264)
+.+.|++|.++++.+..++...-...+...+.. =|.|.|+ =|..--.+...+. -.+.++|+|++.+-|+
T Consensus 200 ~~~~eDiAaSLl~mV~~nIg~lA~~~a~~~~~~-----~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAl 274 (279)
T TIGR00555 200 SFSPEDIAASLLGLIGNNIGQIAYLCALRYNID-----RIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAI 274 (279)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----eEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHh
Confidence 477899999999998888887777666655543 3666664 1222233444442 2568999999999999
Q ss_pred ccccc
Q 000831 525 GMGLA 529 (1264)
Q Consensus 525 G~~~a 529 (1264)
|++++
T Consensus 275 GAaL~ 279 (279)
T TIGR00555 275 GALLS 279 (279)
T ss_pred hhccC
Confidence 99874
No 80
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=63.05 E-value=15 Score=43.51 Aligned_cols=221 Identities=15% Similarity=0.148 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHhhc-CCCceEEEEEcCCCcccccccc---------c-cceecccchhHHHHHHH-hccccCCCCCEEE
Q 000831 249 IKEYLSGFMSKFDEG-LAKVNVLFMQSDGGLAPESRFS---------G-HKAVLSGPAGGVVGYSQ-TLFGLETEKPLIG 316 (1264)
Q Consensus 249 ~~~~l~~l~~~l~~~-~~~~~l~i~~sdGG~~s~~~~~---------p-v~ti~SGPaagv~Ga~~-l~~~~~g~~~~I~ 316 (1264)
++.+|+.|-+..... .+..|-.++---.++-.+++-. . --.+.+=|.+..+|+-. +. .....++
T Consensus 74 ~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i~----~~~g~mi 149 (326)
T PF06723_consen 74 AEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDIF----EPRGSMI 149 (326)
T ss_dssp HHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TT----SSS-EEE
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCCC----CCCceEE
Confidence 366777755555553 4456666666555566655510 1 11456678777777643 22 2346899
Q ss_pred EecCCCceEeeeec-cccceeeeeEEccEEEeecceeeEEEeccCCcE----EEE-e-CCeEEEcccccccCCCcceecc
Q 000831 317 FDMGGTSTDVSRYA-GSYEQVLETQIAGAIIQAPQLDINTVAAGGGSN----LMF-Q-LGAFRVGPESVGAHPGPVCYRK 389 (1264)
Q Consensus 317 ~DmGGTStDv~li~-G~~~~~~~~~i~g~~~~~p~~dv~sIGaGGGSi----~~v-~-~g~l~VGP~SaGa~PGpacy~~ 389 (1264)
+||||-||||+++. |.... -+|+=.||..+ ... . .-.+.||.+.|-.- --..
T Consensus 150 VDIG~GtTdiavislggiv~-----------------s~si~~gG~~~DeaI~~~ir~~y~l~Ig~~tAE~i----K~~~ 208 (326)
T PF06723_consen 150 VDIGGGTTDIAVISLGGIVA-----------------SRSIRIGGDDIDEAIIRYIREKYNLLIGERTAEKI----KIEI 208 (326)
T ss_dssp EEE-SS-EEEEEEETTEEEE-----------------EEEES-SHHHHHHHHHHHHHHHHSEE--HHHHHHH----HHHH
T ss_pred EEECCCeEEEEEEECCCEEE-----------------EEEEEecCcchhHHHHHHHHHhhCcccCHHHHHHH----HHhc
Confidence 99999999999996 66533 33344455432 221 1 22467787765420 0000
Q ss_pred CC-CccHhHH-HHHcCccCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCCCCCCCHHHHHHHHHHHHHH
Q 000831 390 GG-DLAVTDA-NLILGFVIPDYFPSIFGPNEDQPLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANE 467 (1264)
Q Consensus 390 GG-~~TvTDA-~l~lG~l~p~~fl~~~g~~g~~~ld~~~a~~a~~~la~~lg~~~~~~~~~~~gl~~eeaA~~i~~~a~~ 467 (1264)
|= .+..-+. .-+-|+ |.. -|..-...++.+..++|++....++- ++...+| +
T Consensus 209 g~~~~~~~~~~~~v~Gr-d~~-----tGlP~~~~i~~~ev~~ai~~~~~~I~----------------~~i~~~L----e 262 (326)
T PF06723_consen 209 GSASPPEEEESMEVRGR-DLI-----TGLPKSIEITSSEVREAIEPPVDQIV----------------EAIKEVL----E 262 (326)
T ss_dssp -BSS--HHHHEEEEEEE-ETT-----TTCEEEEEEEHHHHHHHHHHHHHHHH----------------HHHHHHH----H
T ss_pred ceeeccCCCceEEEECc-ccc-----CCCcEEEEEcHHHHHHHHHHHHHHHH----------------HHHHHHH----H
Confidence 00 0000000 011122 100 12223456776677777765333331 1111111 2
Q ss_pred HhhHHHHHHHHHhCCCCCCceEEEEcCchHHHH--HHHHHHcCCCEEEECCCCCccccccccc
Q 000831 468 TMCRPIRQLTEMKGHETRNHALACFGGAGPQHA--CAIARSLGMREVLIHRFCGILSAYGMGL 528 (1264)
Q Consensus 468 ~m~~~i~~~~~~~G~dpr~~~lv~~GGag~~~a--~~~a~~Lgi~~vivP~~~~v~sA~G~~~ 528 (1264)
+.-..+..=..++| ++.-||+..+.. -++.+++|++ |.+..+|..+-|.|+..
T Consensus 263 ~~pPel~~DI~~~G-------I~LtGGga~l~Gl~~~i~~~~~~p-V~va~~P~~~va~G~~~ 317 (326)
T PF06723_consen 263 KTPPELAADILENG-------IVLTGGGALLRGLDEYISEETGVP-VRVADDPLTAVARGAGK 317 (326)
T ss_dssp TS-HHHHHHHHHH--------EEEESGGGGSBTHHHHHHHHHSS--EEE-SSTTTHHHHHHHH
T ss_pred hCCHHHHHHHHHCC-------EEEEChhhhhccHHHHHHHHHCCC-EEEcCCHHHHHHHHHHH
Confidence 22222222223455 677777755443 6799999998 88999999888888764
No 81
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=62.83 E-value=4.9 Score=49.74 Aligned_cols=89 Identities=9% Similarity=-0.024 Sum_probs=61.2
Q ss_pred CcEEEEEeccCccccEEEEecC-CceEEEEEecc-------CCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeE
Q 000831 7 EKLRFCIDRGGTFTDVYAEIPG-QLEGQVLKLLS-------VDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEW 78 (1264)
Q Consensus 7 ~~~~iGIDvGGTfTD~v~~~~~-g~~~~~~K~~s-------t~p~d~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~ 78 (1264)
+.|.||||+|.-.--+.++|.. |+++..+..|= --+..-+..+++++..+++.+.++ .++++.+|..
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~-----agv~~~~V~g 76 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAK-----AGVDPADVVG 76 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHH-----cCCChhHeeE
Confidence 4699999999999899999854 66444443321 001011233445554444444332 4688899999
Q ss_pred EEEehhHHhhHhhhcCCCcEEEE
Q 000831 79 IRMGTTVATNALLERKGERIALC 101 (1264)
Q Consensus 79 i~~GTT~~tNAller~g~~vgli 101 (1264)
|=+-+| .|=+++.++|..+.+.
T Consensus 77 IGvDaT-cSlvv~d~~g~pl~v~ 98 (544)
T COG1069 77 IGVDAT-CSLVVIDRDGNPLAVL 98 (544)
T ss_pred EEEcce-eeeEEECCCCCeeccC
Confidence 999999 9999999999999884
No 82
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=62.77 E-value=24 Score=40.96 Aligned_cols=30 Identities=30% Similarity=0.348 Sum_probs=25.6
Q ss_pred EEEEeccCccccEEEEecCCceEEEEEeccC
Q 000831 10 RFCIDRGGTFTDVYAEIPGQLEGQVLKLLSV 40 (1264)
Q Consensus 10 ~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st 40 (1264)
+||||+|||-|-+|+.+++++ +...|-+|+
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~-~~f~~~~~~ 31 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGR-RKFKTFETT 31 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCc-EEEEEeecc
Confidence 699999999999999977777 677787663
No 83
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=61.62 E-value=11 Score=45.53 Aligned_cols=32 Identities=19% Similarity=-0.207 Sum_probs=24.9
Q ss_pred cEEEEEeccCccccEEEEecCCceEEEEEecc
Q 000831 8 KLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLS 39 (1264)
Q Consensus 8 ~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~s 39 (1264)
+|.+|||+|+|.|-+|++|++++++...-.||
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g~Il~~~i~pT 33 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKGEVIGRGITNS 33 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCCcEEEEEecCC
Confidence 58999999999999999976666444445554
No 84
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=59.63 E-value=15 Score=42.25 Aligned_cols=21 Identities=14% Similarity=-0.077 Sum_probs=18.2
Q ss_pred EEEEEeccCccccEEEEecCC
Q 000831 9 LRFCIDRGGTFTDVYAEIPGQ 29 (1264)
Q Consensus 9 ~~iGIDvGGTfTD~v~~~~~g 29 (1264)
|.+|||+|.|.|.+|++|+++
T Consensus 2 ~~~GIDiGStttK~Vlid~~~ 22 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDG 22 (262)
T ss_pred eEEEEEcCcccEEEEEEecCC
Confidence 579999999999999997433
No 85
>PRK12408 glucokinase; Provisional
Probab=58.32 E-value=14 Score=43.67 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=19.9
Q ss_pred CCcEEEEEeccCccccEEEEecCCc
Q 000831 6 EEKLRFCIDRGGTFTDVYAEIPGQL 30 (1264)
Q Consensus 6 ~~~~~iGIDvGGTfTD~v~~~~~g~ 30 (1264)
++-..+++|+|||++=+-++|.++.
T Consensus 14 ~~~~~L~~DIGGT~i~~al~d~~g~ 38 (336)
T PRK12408 14 RPESFVAADVGGTHVRVALVCASPD 38 (336)
T ss_pred ccccEEEEEcChhhhheeEEeccCC
Confidence 3345699999999999999975554
No 86
>PRK11678 putative chaperone; Provisional
Probab=58.07 E-value=9.1 Score=47.26 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=30.0
Q ss_pred cceecccchhHHHHHHHhccccCCCCCEEEEecCCCceEeeeec
Q 000831 287 HKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA 330 (1264)
Q Consensus 287 v~ti~SGPaagv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~ 330 (1264)
+..+..-|+|..++...- ....+.++++|+||.|||+|++.
T Consensus 187 ~v~li~EPtAAAl~y~~~---~~~~~~vlV~D~GGGT~D~Svv~ 227 (450)
T PRK11678 187 DVEFQFEPVAAGLDFEAT---LTEEKRVLVVDIGGGTTDCSMLL 227 (450)
T ss_pred EEEEEcCHHHHHHHhccc---cCCCCeEEEEEeCCCeEEEEEEE
Confidence 456777898776654321 12346799999999999999996
No 87
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=56.27 E-value=19 Score=41.46 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=32.8
Q ss_pred EEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHH
Q 000831 10 RFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEE 59 (1264)
Q Consensus 10 ~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~ 59 (1264)
.||||+|+|++-++++|.+|+++...+.++ ++.+..+.+.+.|.+.+++
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~i~~~~~~~~-~~~~~~~~~~~~i~~~i~~ 51 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQIRQRRQIPT-PASQTPEALRQALSALVSP 51 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCcEEEEEEecC-CCCCCHHHHHHHHHHHHHH
Confidence 599999999999999987788555555543 2222233455666665554
No 88
>PLN03184 chloroplast Hsp70; Provisional
Probab=55.39 E-value=12 Score=48.66 Aligned_cols=41 Identities=22% Similarity=0.461 Sum_probs=29.2
Q ss_pred cceecccchhHHHHHHHhccccCCCCCEEEEecCCCceEeeeec
Q 000831 287 HKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA 330 (1264)
Q Consensus 287 v~ti~SGPaagv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~ 330 (1264)
+..+.+-|+|..++..+-- ...+.++++|+||.||||+++.
T Consensus 202 v~~li~EPtAAAlayg~~~---~~~~~vlV~DlGgGT~DvSi~~ 242 (673)
T PLN03184 202 VLRIINEPTAASLAYGFEK---KSNETILVFDLGGGTFDVSVLE 242 (673)
T ss_pred eEEEeCcHHHHHHHhhccc---CCCCEEEEEECCCCeEEEEEEE
Confidence 3456778877666544321 2345799999999999999985
No 89
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=55.30 E-value=9 Score=44.98 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=40.4
Q ss_pred HHhhHHHHHHHHHhCCCCC-Cc---eEEEEcCchHHH--HHHHHHHcCCCEEEECCCCCcccccccccc
Q 000831 467 ETMCRPIRQLTEMKGHETR-NH---ALACFGGAGPQH--ACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1264)
Q Consensus 467 ~~m~~~i~~~~~~~G~dpr-~~---~lv~~GGag~~~--a~~~a~~Lgi~~vivP~~~~v~sA~G~~~a 529 (1264)
+.+...|++...+.+.+.+ +. .++..||+.-+- .-.+.++++++ |.++.+|-.+-|.|++.+
T Consensus 254 ~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~-v~~~~~P~~ava~Ga~~~ 321 (334)
T PRK13927 254 SAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLP-VHVAEDPLTCVARGTGKA 321 (334)
T ss_pred HHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCC-cEecCCHHHHHHHHHHHH
Confidence 4455555555544443322 22 377778876544 35677788887 778888888899998876
No 90
>CHL00094 dnaK heat shock protein 70
Probab=55.09 E-value=11 Score=48.47 Aligned_cols=40 Identities=23% Similarity=0.487 Sum_probs=28.1
Q ss_pred ceecccchhHHHHHHHhccccCCCCCEEEEecCCCceEeeeec
Q 000831 288 KAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA 330 (1264)
Q Consensus 288 ~ti~SGPaagv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~ 330 (1264)
..+.+-|+|..++...- ....+.++++|+||.||||+++.
T Consensus 166 ~~li~EptAAAlay~~~---~~~~~~vlV~DlGgGT~DvSv~~ 205 (621)
T CHL00094 166 LRIINEPTAASLAYGLD---KKNNETILVFDLGGGTFDVSILE 205 (621)
T ss_pred EEEeccHHHHHHHhccc---cCCCCEEEEEEcCCCeEEEEEEE
Confidence 44667787766554321 12335799999999999999985
No 91
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=54.31 E-value=13 Score=47.51 Aligned_cols=41 Identities=20% Similarity=0.350 Sum_probs=28.9
Q ss_pred cceecccchhHHHHHHHhccccCCCCCEEEEecCCCceEeeeec
Q 000831 287 HKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA 330 (1264)
Q Consensus 287 v~ti~SGPaagv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~ 330 (1264)
+.-+.+-|+|..++...- ....++++++|+||.||||+++.
T Consensus 171 v~~li~EPtAAAlay~~~---~~~~~~vlV~DlGGGT~DvSi~~ 211 (595)
T PRK01433 171 VLRLIAEPTAAAYAYGLN---KNQKGCYLVYDLGGGTFDVSILN 211 (595)
T ss_pred EEEEecCcHHHHHHHhcc---cCCCCEEEEEECCCCcEEEEEEE
Confidence 455677887766554321 11345689999999999999985
No 92
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=54.12 E-value=14 Score=47.42 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=39.9
Q ss_pred HHHHhhHHHHHHHHHhCCCCCCc-eEEEEcCchHHHH--HHHHHHcCCCEEEECCCCCccccccccc
Q 000831 465 ANETMCRPIRQLTEMKGHETRNH-ALACFGGAGPQHA--CAIARSLGMREVLIHRFCGILSAYGMGL 528 (1264)
Q Consensus 465 a~~~m~~~i~~~~~~~G~dpr~~-~lv~~GGag~~~a--~~~a~~Lgi~~vivP~~~~v~sA~G~~~ 528 (1264)
..+.+...|++.....|+++.+. .++..||+.-+-. -.+.+.+|.+ ++.+.+|.-+-|.|+++
T Consensus 291 ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~-~~~~~npdeaVA~GAai 356 (599)
T TIGR01991 291 LVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQE-PLTDIDPDQVVALGAAI 356 (599)
T ss_pred HHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCC-CCCCCCCcHHHHHHHHH
Confidence 33556677777777778877765 4566677643322 3556666754 45566777777777765
No 93
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=52.60 E-value=8.1 Score=40.81 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=32.3
Q ss_pred EEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHh
Q 000831 12 CIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEY 60 (1264)
Q Consensus 12 GIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~~ 60 (1264)
|||+|+|++.++++|-+|+++...+.|+ | .....+++.|.+.++++
T Consensus 1 gidig~~~i~~~l~d~~g~ii~~~~~~~--~-~~~~~~~~~l~~~i~~~ 46 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEIIYSESIPT--P-TSPEELLDALAELIERL 46 (179)
T ss_dssp EEEEESSEEEEEEEETTSCEEEEEEEEH--H-SSHHHHHHHHHHHHHHH
T ss_pred CEEECCCEEEEEEECCCCCEEEEEEEEC--C-CCHHHHHHHHHHHHHHH
Confidence 7999999999999988888666666654 2 23344555666665554
No 94
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=51.32 E-value=17 Score=44.51 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=20.2
Q ss_pred CCEEEEecCCCceEeeeec-cccce
Q 000831 312 KPLIGFDMGGTSTDVSRYA-GSYEQ 335 (1264)
Q Consensus 312 ~~~I~~DmGGTStDv~li~-G~~~~ 335 (1264)
..++++||||.|||++++. |.+..
T Consensus 204 ~gv~vvDiGggtTdisv~~~G~l~~ 228 (420)
T PRK09472 204 LGVCVVDIGGGTMDIAVYTGGALRH 228 (420)
T ss_pred cCeEEEEeCCCceEEEEEECCEEEE
Confidence 4689999999999999996 76643
No 95
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=47.92 E-value=25 Score=43.04 Aligned_cols=65 Identities=20% Similarity=0.253 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEcCCCccccccccccceecccchhHHHHHHHhccccCCCCCEEEEecCCCceEeeee
Q 000831 250 KEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRY 329 (1264)
Q Consensus 250 ~~~l~~l~~~l~~~~~~~~l~i~~sdGG~~s~~~~~pv~ti~SGPaagv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li 329 (1264)
++++++|.+.+.+.++. +..+-.-|-|+..+ .|..+ .-.-++.++||||-||||++.
T Consensus 164 ~~~~~Nl~k~v~r~gl~--------------------v~~i~l~plAsa~a--~L~~d-EkelGv~lIDiG~GTTdIai~ 220 (418)
T COG0849 164 KNILENLEKCVERAGLK--------------------VDNIVLEPLASALA--VLTED-EKELGVALIDIGGGTTDIAIY 220 (418)
T ss_pred hHHHHHHHHHHHHhCCC--------------------eeeEEEehhhhhhh--ccCcc-cHhcCeEEEEeCCCcEEEEEE
Confidence 67788888888775432 22233333333222 33321 122368999999999999999
Q ss_pred c-cccceee
Q 000831 330 A-GSYEQVL 337 (1264)
Q Consensus 330 ~-G~~~~~~ 337 (1264)
. |.+..+.
T Consensus 221 ~~G~l~~~~ 229 (418)
T COG0849 221 KNGALRYTG 229 (418)
T ss_pred ECCEEEEEe
Confidence 6 8885443
No 96
>PRK13331 pantothenate kinase; Reviewed
Probab=47.57 E-value=41 Score=38.50 Aligned_cols=59 Identities=7% Similarity=-0.077 Sum_probs=38.0
Q ss_pred cEEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEEehh
Q 000831 8 KLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRMGTT 84 (1264)
Q Consensus 8 ~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~i~~GTT 84 (1264)
+..+.||||=|+|.+-+++ +++++...+ |++.+.++ ++..++. .++++++++.+++++.
T Consensus 7 ~~~L~iDiGNT~~~~g~f~-~~~~~~~~r---t~~~~t~d-----~~~~l~~---------~~~~~~~i~~~iisSV 65 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFS-GETLVKTWD---TPHLDESI-----IQLLLPG---------QTLLIVAPNPLVIASV 65 (251)
T ss_pred CcEEEEEeCCCcEEEEEEE-CCEEEEEEE---cCCcchHH-----HHHHHHH---------cCCCccccCEEEEEec
Confidence 4579999999999999996 335333344 33433322 6666654 2455667888877773
No 97
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=46.16 E-value=20 Score=45.69 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=33.1
Q ss_pred ccceecccchhHHHHHHHhccccCCCCCEEEEecCCCceEeeee
Q 000831 286 GHKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRY 329 (1264)
Q Consensus 286 pv~ti~SGPaagv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li 329 (1264)
.+.-+..=|+|..++.. |.+...+..|++++|+||++|||+++
T Consensus 172 ~vlrii~EPtAaalAyg-l~k~~~~~~~VlI~DlGggtfdvs~l 214 (620)
T KOG0101|consen 172 NVLRIINEPTAAALAYG-LDKKVLGERNVLIFDLGGGTFDVSVL 214 (620)
T ss_pred ceeeeecchHHHHHHhh-ccccccceeeEEEEEcCCCceeeeeE
Confidence 35667778888777766 33334467899999999999999998
No 98
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=45.50 E-value=70 Score=37.82 Aligned_cols=79 Identities=15% Similarity=0.250 Sum_probs=46.7
Q ss_pred HHHHHHHHHHCCCCEEEEEecCCCC-CcHHHHHHHHHHHhcCCccEEEeecccCcCCcccchhhhhhhhcccHHHHHHHH
Q 000831 176 LEPLLKGLLEKGISCLAVVLMHSYT-FPQHEMAVEKLALGLGFRHVSLSSALTPMVRAVPRGLTASVDAYLTPVIKEYLS 254 (1264)
Q Consensus 176 v~~~~~~l~~~gv~avaV~~l~S~~-np~hE~~v~ei~~~~~~~~VtlS~ei~p~~~e~eR~~ttvlNAyl~p~~~~~l~ 254 (1264)
+...++.|+..|++-|.+..-|-.. -..||.|.- -.++|+ .|++|+|--| +++--- .-.++++|.
T Consensus 43 I~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y--~~~lgV-ei~~s~etep-lgtaGp----------l~laR~~L~ 108 (371)
T KOG1322|consen 43 ILHQIEALINSGITKIVLATQYNSESLNRHLSKAY--GKELGV-EILASTETEP-LGTAGP----------LALARDFLW 108 (371)
T ss_pred hHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh--hhccce-EEEEEeccCC-Ccccch----------HHHHHHHhh
Confidence 5667788889999998877644221 223444333 223476 6999999764 332211 112355544
Q ss_pred HHHHHHhhcCCCceEEEEEcCC
Q 000831 255 GFMSKFDEGLAKVNVLFMQSDG 276 (1264)
Q Consensus 255 ~l~~~l~~~~~~~~l~i~~sdG 276 (1264)
.+++ .|++++.||=
T Consensus 109 ~~~~--------~~ffVLnsDv 122 (371)
T KOG1322|consen 109 VFED--------APFFVLNSDV 122 (371)
T ss_pred hcCC--------CcEEEecCCe
Confidence 4433 3899998886
No 99
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=45.33 E-value=79 Score=38.84 Aligned_cols=54 Identities=26% Similarity=0.249 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHC-C-CCEEEEEecCCCCCcHHHHHHHHHHHhcCCccEEEe
Q 000831 170 PVNEKTLEPLLKGLLEK-G-ISCLAVVLMHSYTFPQHEMAVEKLALGLGFRHVSLS 223 (1264)
Q Consensus 170 plde~~v~~~~~~l~~~-g-v~avaV~~l~S~~np~hE~~v~ei~~~~~~~~VtlS 223 (1264)
-+..++++++++++++. . =.-++|-+++++.+|..|....+++.+.++..|..|
T Consensus 47 ~l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~~~v~l~le~gV~~ve~s 102 (418)
T cd04742 47 GLPLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPELEEGLVDLFLRHGVRVVEAS 102 (418)
T ss_pred CCCHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchhHHHHHHHHHHcCCCEEEec
Confidence 35789999999999984 3 467999999888888888887788887777445555
No 100
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=45.12 E-value=13 Score=43.22 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=15.6
Q ss_pred EEEEeccCccccEEEEecCCc
Q 000831 10 RFCIDRGGTFTDVYAEIPGQL 30 (1264)
Q Consensus 10 ~iGIDvGGTfTD~v~~~~~g~ 30 (1264)
-|.+|+|||-||+.++ .+|+
T Consensus 79 ~i~vDmGGTTtDi~~i-~~G~ 98 (290)
T PF01968_consen 79 AIVVDMGGTTTDIALI-KDGR 98 (290)
T ss_dssp EEEEEE-SS-EEEEEE-ETTE
T ss_pred EEEEeCCCCEEEEEEE-ECCe
Confidence 5899999999999999 4666
No 101
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=43.95 E-value=35 Score=36.54 Aligned_cols=74 Identities=23% Similarity=0.255 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCchH--HHHHHHHHHcCCCEEEECCCCCcccccccccc
Q 000831 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGP--QHACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1264)
Q Consensus 452 l~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag~--~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~a 529 (1264)
.+..+.+.+|++=....+...++.+....|.+++ .|++.||+.- ...-.+|+.||.+ |.+|.. .-.+|+|+++.
T Consensus 118 ~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~--~i~~~GG~~~n~~~~q~~Advl~~~-V~~~~~-~e~~a~GaA~~ 193 (198)
T PF02782_consen 118 TTRADLARAVLEGIAFSLRQILEELEELTGIPIR--RIRVSGGGAKNPLWMQILADVLGRP-VVRPEV-EEASALGAALL 193 (198)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCES--EEEEESGGGGSHHHHHHHHHHHTSE-EEEESS-STHHHHHHHHH
T ss_pred cCHHHHHHHHHHhHHHHHHHhhhhccccccccce--eeEeccccccChHHHHHHHHHhCCc-eEeCCC-CchHHHHHHHH
Confidence 3567777777777777777777766655577766 4566666643 2334688899977 677776 77888888753
No 102
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=43.10 E-value=31 Score=40.35 Aligned_cols=39 Identities=18% Similarity=0.011 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCchH
Q 000831 456 DIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGP 497 (1264)
Q Consensus 456 eaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag~ 497 (1264)
+.|..+++.....++..+..+... +||+.-. +.+||..+
T Consensus 234 ~~A~~~~~~~~~~lg~~i~nl~~~--ldpeggv-~v~GG~~~ 272 (316)
T TIGR00749 234 TDCRRALSLFCVIYGRFAGNLALN--LGTRGGV-YIAGGIVP 272 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hCCCCcE-EEECcHHH
Confidence 577788888888899888888765 6776443 45555433
No 103
>PF10144 SMP_2: Bacterial virulence factor haemolysin; InterPro: IPR019305 This entry represents a group of bacterial proteins that are membrane proteins that effect the expression of haemolysin under anaerobic conditions [].
Probab=42.96 E-value=29 Score=38.63 Aligned_cols=57 Identities=25% Similarity=0.466 Sum_probs=37.8
Q ss_pred ccceeeCCCCCeeeecCCCceeeccchHHHHHHHHHccCCCCCCcEEEecCCCCCC--CCCCCeEEEEeeeeCCeEEEEE
Q 000831 772 FSCALFGPDGGLVANAPHVPVHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHPCAGG--SHLPDITVITPVFDNGKLVFFV 849 (1264)
Q Consensus 772 ~s~aI~d~~G~lva~~~~ip~h~gs~~~~v~~il~~~~~~l~pGDv~i~NDPy~Gg--~Hl~Dv~~~~PVF~~Gelv~~~ 849 (1264)
+.++|||++|.++|++.. ...++..+. + |.|..+. .| -++.||+.+++++||.
T Consensus 88 ldAsIYd~~G~lLA~S~~--------~~~vr~~L~-----l--------d~~~~~~~~~q----q~VepI~~~~~~~Gfl 142 (210)
T PF10144_consen 88 LDASIYDADGVLLAQSGE--------SVSVRERLG-----L--------DGPEAGSYGRQ----QIVEPIYSDDGPLGFL 142 (210)
T ss_pred eEEEEECCCCCEEEEcCC--------Ccchhhhhc-----C--------CcccccccCCc----eEEEEeccCCCeeEEE
Confidence 678999999999999752 123344442 1 2222221 23 5899999999999997
Q ss_pred eccc
Q 000831 850 ASRG 853 (1264)
Q Consensus 850 ~~~~ 853 (1264)
=..-
T Consensus 143 RiTl 146 (210)
T PF10144_consen 143 RITL 146 (210)
T ss_pred EEEE
Confidence 6543
No 104
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=41.13 E-value=23 Score=43.56 Aligned_cols=72 Identities=19% Similarity=0.094 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCch--HHHHHHHHHHcCCCEEEECCCCCccccccccc
Q 000831 453 TVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAYGMGL 528 (1264)
Q Consensus 453 ~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag--~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ 528 (1264)
+.++.|.+.++-..-+..+-++.+...-|.+.. .|-+=||+. ..++-+.|+.||++ |+.|.... .+|+|++.
T Consensus 372 ~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~--~LrvDGG~s~n~~lmQfqADilg~~-V~Rp~~~E-tTAlGaA~ 445 (499)
T COG0554 372 TKAHIARATLESIAYQTRDVLEAMEKDSGIKLT--RLRVDGGASRNNFLMQFQADILGVP-VERPVVLE-TTALGAAY 445 (499)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce--eEEEcCccccchhHHHHHHHHhCCe-eeccccch-hhHHHHHH
Confidence 345555555544444445555566666665222 344445542 23345789999998 88888754 45666654
No 105
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=39.99 E-value=19 Score=38.83 Aligned_cols=16 Identities=50% Similarity=0.721 Sum_probs=14.7
Q ss_pred EEEecCCCceEeeeec
Q 000831 315 IGFDMGGTSTDVSRYA 330 (1264)
Q Consensus 315 I~~DmGGTStDv~li~ 330 (1264)
|.+|+|||-||+-+++
T Consensus 2 igIDvGGT~TD~v~~d 17 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLD 17 (176)
T ss_pred eeEecCCCcEEEEEEe
Confidence 6799999999999986
No 106
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=39.72 E-value=39 Score=41.81 Aligned_cols=28 Identities=14% Similarity=0.381 Sum_probs=22.7
Q ss_pred CCCEEEEecCCCceEeeeec-cccceeee
Q 000831 311 EKPLIGFDMGGTSTDVSRYA-GSYEQVLE 338 (1264)
Q Consensus 311 ~~~~I~~DmGGTStDv~li~-G~~~~~~~ 338 (1264)
..-+..+||||-|||+++.. |+...+..
T Consensus 145 e~gVa~IDIGgGTT~iaVf~~G~l~~T~~ 173 (475)
T PRK10719 145 NTRVLNIDIGGGTANYALFDAGKVIDTAC 173 (475)
T ss_pred cCceEEEEeCCCceEEEEEECCEEEEEEE
Confidence 44689999999999999996 88855543
No 107
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=39.53 E-value=96 Score=36.19 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC---CceEEEEcC
Q 000831 455 EDIALGFVNVANETMCRPIRQLTEMKGHETR---NHALACFGG 494 (1264)
Q Consensus 455 eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr---~~~lv~~GG 494 (1264)
.+++..|++-|-+...+.|+.+..+.+-+.+ .+.++++||
T Consensus 230 d~~~~~ifr~Ag~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~ 272 (336)
T KOG1794|consen 230 DPLSAEIFRNAGETLGRHVVAVLPQLPPTLKKGKTLPIVCVGG 272 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcCchhcccCcceEEEEcc
Confidence 6888999999999999999999887655544 488999998
No 108
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=38.68 E-value=99 Score=36.67 Aligned_cols=20 Identities=25% Similarity=0.131 Sum_probs=18.0
Q ss_pred EEEeccCccccEEEEecCCc
Q 000831 11 FCIDRGGTFTDVYAEIPGQL 30 (1264)
Q Consensus 11 iGIDvGGTfTD~v~~~~~g~ 30 (1264)
||+||||-||+++.++++|+
T Consensus 1 ~G~DiGGA~~K~a~~~~~g~ 20 (318)
T TIGR03123 1 LGIDIGGANTKAAELDEDGR 20 (318)
T ss_pred CccccccceeeeEEecCCCc
Confidence 69999999999999976776
No 109
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=38.62 E-value=14 Score=46.80 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=36.9
Q ss_pred HHHhhHHHHHHHHHhCCCCCCc-eEEEEcCchHHHH--HHHHHHcCCCEEEECCCCCccccccccc
Q 000831 466 NETMCRPIRQLTEMKGHETRNH-ALACFGGAGPQHA--CAIARSLGMREVLIHRFCGILSAYGMGL 528 (1264)
Q Consensus 466 ~~~m~~~i~~~~~~~G~dpr~~-~lv~~GGag~~~a--~~~a~~Lgi~~vivP~~~~v~sA~G~~~ 528 (1264)
.+.+...|+.+..+.++.+.+. .++..||+.-+-. -.+.+.++ +.+..+.+|.-+-|.||++
T Consensus 308 ~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~ 372 (602)
T PF00012_consen 308 LERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAAL 372 (602)
T ss_dssp HHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHH
T ss_pred ccccccccccccccccccccccceeEEecCcccchhhhhhhhhccc-ccccccccccccccccccc
Confidence 3455566666666666555443 3677777654333 45666778 7777777887777888763
No 110
>PRK11477 carbohydrate diacid transcriptional activator CdaR; Provisional
Probab=38.44 E-value=69 Score=38.54 Aligned_cols=72 Identities=15% Similarity=0.284 Sum_probs=48.2
Q ss_pred ccccceeeCCCCCeeeecCCCceeeccchHHHHHHHHHccCCCCCCcEEEecCC---CCCCCCCCCeEEEEeeeeCCeEE
Q 000831 770 LDFSCALFGPDGGLVANAPHVPVHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHP---CAGGSHLPDITVITPVFDNGKLV 846 (1264)
Q Consensus 770 ~D~s~aI~d~~G~lva~~~~ip~h~gs~~~~v~~il~~~~~~l~pGDv~i~NDP---y~Gg~Hl~Dv~~~~PVF~~Gelv 846 (1264)
-++..-|.|.+|.++|.+. |--+|..+...+.+++ .|+.+..|+- ...|+. | .+-+|||++|+++
T Consensus 22 i~~ninimd~~G~IIaS~d--~~Rig~~HegA~~~~~-------~~~~~~i~~~~~~~~~g~k-~--GiN~Pi~~~~~vi 89 (385)
T PRK11477 22 IDTNINVMDARGRIIGSGD--RERIGELHEGALLVLS-------QGRVVDIDDAVARHLHGVR-Q--GINLPLRLEGEIV 89 (385)
T ss_pred cCCCeEEECCCCEEEecCC--hHHcccccHHHHHHHh-------cCCeeeecHHHHhhcCCCC-c--CceeeEEECCEEE
Confidence 4578889999999999764 4556776665555543 3445444443 223332 2 4566999999999
Q ss_pred EEEeccc
Q 000831 847 FFVASRG 853 (1264)
Q Consensus 847 ~~~~~~~ 853 (1264)
|+.+..+
T Consensus 90 GvIgItG 96 (385)
T PRK11477 90 GVIGLTG 96 (385)
T ss_pred EEEecCC
Confidence 9998553
No 111
>PRK13324 pantothenate kinase; Reviewed
Probab=34.20 E-value=1.1e+02 Score=35.30 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=41.4
Q ss_pred EEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEEeh
Q 000831 9 LRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRMGT 83 (1264)
Q Consensus 9 ~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~d~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~i~~GT 83 (1264)
|.+.||+|=|+|..-+++ +++++...+.+|-+....++....-+...++.. ++++.+++.+++++
T Consensus 1 MiL~iDiGNT~ik~gl~~-~~~~~~~~r~~t~~~~~t~de~~~~l~~~~~~~---------~~~~~~i~~viisS 65 (258)
T PRK13324 1 MLLVMDMGNSHIHIGVFD-GDRIVSQIRYATSSVDSTSDQMGVFLRQALREN---------SVDLGKIDGCGISS 65 (258)
T ss_pred CEEEEEeCCCceEEEEEE-CCEEEEEEEEecCccccchHHHHHHHHHHHHhc---------CCCccCCCeEEEEe
Confidence 368999999999999996 334344556644123334455555566666542 34556778788777
No 112
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=32.85 E-value=37 Score=39.27 Aligned_cols=45 Identities=31% Similarity=0.278 Sum_probs=30.1
Q ss_pred ccceecccchhHHHHHHHhccccCCC-CCEEEEecCCCceEeeeec--cccc
Q 000831 286 GHKAVLSGPAGGVVGYSQTLFGLETE-KPLIGFDMGGTSTDVSRYA--GSYE 334 (1264)
Q Consensus 286 pv~ti~SGPaagv~Ga~~l~~~~~g~-~~~I~~DmGGTStDv~li~--G~~~ 334 (1264)
|+++-.+=+-..+.||.-.- |. +++..+||||-|||.++|. |+..
T Consensus 111 ~V~igGvEAemAi~GALTTP----Gt~~PlaIlDmG~GSTDAsii~~~g~v~ 158 (332)
T PF08841_consen 111 PVEIGGVEAEMAILGALTTP----GTDKPLAILDMGGGSTDASIINRDGEVT 158 (332)
T ss_dssp EEEEECEHHHHHHHHHTTST----T--SSEEEEEE-SSEEEEEEE-TTS-EE
T ss_pred ceEEccccHHHHHhcccCCC----CCCCCeEEEecCCCcccHHHhCCCCcEE
Confidence 45565566667777765432 33 5789999999999999994 6653
No 113
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=31.40 E-value=1.7e+02 Score=30.17 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCchHHHHHHHHHHcCCCEEEECCCCCccccccccccc
Q 000831 451 DMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGLAD 530 (1264)
Q Consensus 451 gl~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ad 530 (1264)
|.++.+++.-+-.+...-+.+.++....+.|..|.+|+++++|+.|- ++. .|. + |
T Consensus 14 g~~~~~i~~~~s~~~d~l~~r~~~la~~~~~~pp~~~a~lalGS~GR------------~E~-~~~-s-----------D 68 (138)
T PF03445_consen 14 GASVRQIARILSELNDALIRRLIELAEAEMGPPPVPFAWLALGSYGR------------REQ-TLY-S-----------D 68 (138)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccc------------cCC-CcC-c-----------c
Confidence 57777776555455555556777777667788999999999999752 111 111 1 1
Q ss_pred eEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 000831 531 VVEEAQEPYSAVYGPESVLEVSRREGILSKQVKQKLQEQGFRE 573 (1264)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~l~~~G~~~ 573 (1264)
+ +-- +.+++...+...+-|..+.++....|.+-|+++
T Consensus 69 q----D~a--lv~~d~~~~~~~~~f~~~a~~~~~~L~~~G~~~ 105 (138)
T PF03445_consen 69 Q----DNA--LVFEDEESEEDRAYFEAFAERLVDALDECGFPP 105 (138)
T ss_pred c----cce--eeecCccchhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 1 111 111112234578899999999999999999975
No 114
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=29.55 E-value=1.4e+02 Score=31.54 Aligned_cols=91 Identities=22% Similarity=0.301 Sum_probs=60.7
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCcHHHHHHHHHHHhcCCccEEEeecccCcCCcccchhhhhhhhcc
Q 000831 166 RVVKPVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGLGFRHVSLSSALTPMVRAVPRGLTASVDAYL 245 (1264)
Q Consensus 166 ~v~~plde~~v~~~~~~l~~~gv~avaV~~l~S~~np~hE~~v~ei~~~~~~~~VtlS~ei~p~~~e~eR~~ttvlNAyl 245 (1264)
..+....+++.++..+.|.+.+.+ +-|...+-|-+|..|..++++.++ |...|. +.|.+=.|..++|
T Consensus 64 SPL~~~t~~q~~~l~~~L~~~~~~-~~v~~amry~~P~i~~~l~~l~~~-g~~~ii----vlPl~P~~S~~Tt------- 130 (159)
T cd03411 64 SPLNEITRAQAEALEKALDERGID-VKVYLAMRYGPPSIEEALEELKAD-GVDRIV----VLPLYPQYSASTT------- 130 (159)
T ss_pred CccHHHHHHHHHHHHHHHhccCCC-cEEEehHhcCCCCHHHHHHHHHHc-CCCEEE----EEECCcccccccH-------
Confidence 555555666777777777665433 445555788899999888888765 432333 5577777888888
Q ss_pred cHHHHHHHHHHHHHHhhcCCCceEEEEE
Q 000831 246 TPVIKEYLSGFMSKFDEGLAKVNVLFMQ 273 (1264)
Q Consensus 246 ~p~~~~~l~~l~~~l~~~~~~~~l~i~~ 273 (1264)
..+++.+.+.+++.....++.+++
T Consensus 131 ----~s~~~~~~~~~~~~~~~~~~~~i~ 154 (159)
T cd03411 131 ----GSYLDEVERALKKLRPAPELRVIR 154 (159)
T ss_pred ----HHHHHHHHHHHHhcCCCCcEEEeC
Confidence 788888888887743334555543
No 115
>PRK09732 hypothetical protein; Provisional
Probab=29.37 E-value=2.2e+02 Score=29.59 Aligned_cols=75 Identities=20% Similarity=0.207 Sum_probs=44.6
Q ss_pred cccccceeeCCCCCeeeec--CCCceeeccchHHHHHHHH--Hcc-------CCCCCCcEEEecCCCCCCCCCCCeEEE-
Q 000831 769 RLDFSCALFGPDGGLVANA--PHVPVHLGAMSSTVRWQLK--YWR-------HNLNEGDVLVSNHPCAGGSHLPDITVI- 836 (1264)
Q Consensus 769 ~~D~s~aI~d~~G~lva~~--~~ip~h~gs~~~~v~~il~--~~~-------~~l~pGDv~i~NDPy~Gg~Hl~Dv~~~- 836 (1264)
..-.+.+|.|+.|.+++.. .+-+.|.- ..+.+.... .|+ +.+++|..++.+ .+.++.+
T Consensus 27 g~~v~iaVvD~~G~l~a~~RmDgA~~~s~--~iA~~KA~TAa~~~~~T~~~~~~~~~g~~~~~~--------~~~~~~~~ 96 (134)
T PRK09732 27 NWSVSIAVADDGGHLLALSRMDDCAPIAA--YISQEKARTAALGRRETKGYEEMVNNGRTAFVT--------APLLTSLE 96 (134)
T ss_pred CCCEEEEEEcCCCCEEEEEEcCCCccccH--HHHHHHHHHHHHcCCCHHHHHHHHccCchhhcc--------CCCEEEeC
Confidence 4468899999999999964 35554432 333322111 122 246677654432 3444433
Q ss_pred --EeeeeCCeEEEEEeccc
Q 000831 837 --TPVFDNGKLVFFVASRG 853 (1264)
Q Consensus 837 --~PVF~~Gelv~~~~~~~ 853 (1264)
.||..+|++|+=.+..+
T Consensus 97 GG~Pi~~~g~viGAIGVSG 115 (134)
T PRK09732 97 GGVPVVVDGQIIGAVGVSG 115 (134)
T ss_pred CeeEEeECCEEEEEEEcCC
Confidence 59999999998766543
No 116
>PRK00047 glpK glycerol kinase; Provisional
Probab=29.13 E-value=1.2e+02 Score=37.90 Aligned_cols=75 Identities=19% Similarity=0.084 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCch--HHHHHHHHHHcCCCEEEECCCCCcccccccccc
Q 000831 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1264)
Q Consensus 452 l~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag--~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~a 529 (1264)
.+..+.+.++++=..-++...++.+....|..++. |.+.||+. ++..-.+|+.||.+ |.++..+. .+|+|+++.
T Consensus 372 ~~~~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~--i~~~GGga~s~~w~Qi~ADvlg~p-V~~~~~~e-~~a~GaA~~ 447 (498)
T PRK00047 372 TTKEHIIRATLESIAYQTRDVLDAMQADSGIRLKE--LRVDGGAVANNFLMQFQADILGVP-VERPVVAE-TTALGAAYL 447 (498)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCce--EEEecCcccCHHHHHHHHHhhCCe-eEecCccc-chHHHHHHH
Confidence 34677777777766677777777665444766553 45555542 23334678899987 67777544 678998875
Q ss_pred c
Q 000831 530 D 530 (1264)
Q Consensus 530 d 530 (1264)
-
T Consensus 448 A 448 (498)
T PRK00047 448 A 448 (498)
T ss_pred H
Confidence 4
No 117
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=29.07 E-value=77 Score=39.30 Aligned_cols=52 Identities=19% Similarity=0.387 Sum_probs=36.1
Q ss_pred cceecccchhHHHHHHHhccccCCCCCEEEEecCCCceEeeeec-cccceeeeeEEcc
Q 000831 287 HKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA-GSYEQVLETQIAG 343 (1264)
Q Consensus 287 v~ti~SGPaagv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~-G~~~~~~~~~i~g 343 (1264)
.+.+++|=-+ ||+.+++ .....++=+||||-||.+++.+ |+..-+.--.|+|
T Consensus 123 LEsiiAgkGs---GA~~~S~--~~~~~V~NiDIGGGTtN~avf~~G~v~~T~cl~IGG 175 (473)
T PF06277_consen 123 LESIIAGKGS---GAAALSK--EHHTVVANIDIGGGTTNIAVFDNGEVIDTACLDIGG 175 (473)
T ss_pred HHHHHhccCc---cHHHHhh--hhCCeEEEEEeCCCceeEEEEECCEEEEEEEEeecc
Confidence 5666666543 4555553 2446799999999999999996 9886555445544
No 118
>PF05651 Diacid_rec: Putative sugar diacid recognition; InterPro: IPR008599 This region is found in several proteins characterised as carbohydrate diacid regulators (e.g. P36047 from SWISSPROT). An HTH DNA-binding motif is found at the C terminus of these proteins suggesting that this region includes the sugar recognition region.
Probab=28.55 E-value=1.2e+02 Score=31.47 Aligned_cols=73 Identities=12% Similarity=0.305 Sum_probs=53.4
Q ss_pred cccccceeeCCCCCeeeecCCCceeeccchHHHHHHHHHccCCCCCCc-EEEecCC--CCCCCCCCCeEEEEeeeeCCeE
Q 000831 769 RLDFSCALFGPDGGLVANAPHVPVHLGAMSSTVRWQLKYWRHNLNEGD-VLVSNHP--CAGGSHLPDITVITPVFDNGKL 845 (1264)
Q Consensus 769 ~~D~s~aI~d~~G~lva~~~~ip~h~gs~~~~v~~il~~~~~~l~pGD-v~i~NDP--y~Gg~Hl~Dv~~~~PVF~~Gel 845 (1264)
.-++..-|+|.+|..+|.+ -|-.+|+.+...+.+++. ++ +.++++- .+.|+++ .+-+||+++|++
T Consensus 16 ~i~~~inimd~~G~IIASt--d~~RIG~~HegA~~~i~~-------~~~~~i~~~~~~~~~g~k~---GinlPI~~~g~~ 83 (135)
T PF05651_consen 16 IIGYNINIMDENGIIIAST--DPERIGTFHEGAKEVIRT-------NKEIEITEEDAEQYPGVKP---GINLPIIFNGEV 83 (135)
T ss_pred HcCCCEEEECCCcEEEecC--ChhhcCccCHHHHHHHHc-------CCcccccHhHHhhccCCCc---ceeeeEEECCEE
Confidence 4568889999999999865 477788888887787752 22 4455554 2345553 466799999999
Q ss_pred EEEEeccc
Q 000831 846 VFFVASRG 853 (1264)
Q Consensus 846 v~~~~~~~ 853 (1264)
||-.+-.+
T Consensus 84 iGviGItG 91 (135)
T PF05651_consen 84 IGVIGITG 91 (135)
T ss_pred EEEEEEec
Confidence 99887665
No 119
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=28.32 E-value=2.2e+02 Score=35.31 Aligned_cols=54 Identities=24% Similarity=0.210 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHCCCC-E-EEEEecCCCCCcHHHHHHHHHHHhcCCccEEEe
Q 000831 170 PVNEKTLEPLLKGLLEKGIS-C-LAVVLMHSYTFPQHEMAVEKLALGLGFRHVSLS 223 (1264)
Q Consensus 170 plde~~v~~~~~~l~~~gv~-a-vaV~~l~S~~np~hE~~v~ei~~~~~~~~VtlS 223 (1264)
-++.+++++.++++++.=-+ . ++|-+++++.+|..|.+..+++.+.++..|..|
T Consensus 52 ~l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 52 GLPLEEVEQAIHRIQQALPGGPAYGVNLIHSPSDPALEWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceEEEecccCCCcccHHHHHHHHHHcCCCEEEec
Confidence 35789999999999874222 4 999999998899888888787777666445555
No 120
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=28.11 E-value=30 Score=18.93 Aligned_cols=8 Identities=75% Similarity=1.979 Sum_probs=5.8
Q ss_pred CCCcccCC
Q 000831 1256 PAGGGWGS 1263 (1264)
Q Consensus 1256 ~GGGGyGd 1263 (1264)
|-|||||.
T Consensus 1 phgG~Wgq 8 (8)
T PF03991_consen 1 PHGGGWGQ 8 (8)
T ss_pred CCCCcCCC
Confidence 35899983
No 121
>PRK13326 pantothenate kinase; Reviewed
Probab=28.01 E-value=9.8e+02 Score=27.59 Aligned_cols=181 Identities=9% Similarity=-0.005 Sum_probs=0.0
Q ss_pred hhcccHHHHHHHHHHHHHHhhcCCCceEEEEEcCCCcccccccccc-ceecccchhHHHHHHHhccccCCCCCEEEEecC
Q 000831 242 DAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFSGH-KAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMG 320 (1264)
Q Consensus 242 NAyl~p~~~~~l~~l~~~l~~~~~~~~l~i~~sdGG~~s~~~~~pv-~ti~SGPaagv~Ga~~l~~~~~g~~~~I~~DmG 320 (1264)
...+..++...-+.+++.+++.....|+++....-.-+......|- .++-+==-+.++||..+. +.+++|++|+|
T Consensus 59 ~viisSVvp~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~y~~~~~~LGaDR~a~~vaA~~~~----~~~~~iVID~G 134 (262)
T PRK13326 59 QVFVSSVVPVIDKVLINVIFSLYKVKPLFIGFDLNYDLSFNPYNSNKFLLGSDVFANLVGAIEYY----NINDALVVDLG 134 (262)
T ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCccCceeecCCCCcccccHHHHHHHHHHHHhc----CCCCEEEEECC
Q ss_pred CC-ceEeeeeccccceeeeeEEccEEEeecceeeEEEeccCCcEEEEeCCeEEEcccccccCCCcceeccCCCccHhHHH
Q 000831 321 GT-STDVSRYAGSYEQVLETQIAGAIIQAPQLDINTVAAGGGSNLMFQLGAFRVGPESVGAHPGPVCYRKGGDLAVTDAN 399 (1264)
Q Consensus 321 GT-StDv~li~G~~~~~~~~~i~g~~~~~p~~dv~sIGaGGGSi~~v~~g~l~VGP~SaGa~PGpacy~~GG~~TvTDA~ 399 (1264)
-. |+|+
T Consensus 135 TA~T~D~------------------------------------------------------------------------- 141 (262)
T PRK13326 135 TACTIFA------------------------------------------------------------------------- 141 (262)
T ss_pred CceEEEE-------------------------------------------------------------------------
Q ss_pred HHcCccCCCC-CCCcCCCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCCCCCCCHHHH-HHHHHHHHHHHhhHHHHHHH
Q 000831 400 LILGFVIPDY-FPSIFGPNEDQPLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDI-ALGFVNVANETMCRPIRQLT 477 (1264)
Q Consensus 400 l~lG~l~p~~-fl~~~g~~g~~~ld~~~a~~a~~~la~~lg~~~~~~~~~~~gl~~eea-A~~i~~~a~~~m~~~i~~~~ 477 (1264)
++.+. |+ ||-.--=.....+|+.+=..+|...=-+.-+..+|.+.+++ -.|++.-....+-..++++.
T Consensus 142 -----V~~~g~~l-----GG~I~PGi~l~~~AL~~~TA~Lp~v~l~~p~~~iG~nT~~aI~sGi~~g~~~~I~g~i~~~~ 211 (262)
T PRK13326 142 -----VSRQDGIL-----GGLINGGPFTNLNALLDNAYLLKDFNLSVPKNLLGLSTSDSVNSGVIYQYKYLIEGVYHDLK 211 (262)
T ss_pred -----EcCCCcEE-----EEEECccHHHHHHHHHHhHhcCCCCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhCCCCCCceEEEEcCchHHHHHHHHHHcCCCEEEECC
Q 000831 478 EMKGHETRNHALACFGGAGPQHACAIARSLGMREVLIHR 516 (1264)
Q Consensus 478 ~~~G~dpr~~~lv~~GGag~~~a~~~a~~Lgi~~vivP~ 516 (1264)
.+.| .++.+++-||- |..++..+.....+.|.
T Consensus 212 ~e~~---~~~~vv~TGG~----a~~l~~~~~~~~~~~~~ 243 (262)
T PRK13326 212 RNYD---REFNLIITGGN----SNLILPLISVDFIFNLY 243 (262)
T ss_pred HHhC---CCCEEEEECCC----HHHHHhhCCCCcEECcc
No 122
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=27.96 E-value=1.4e+02 Score=37.44 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=43.9
Q ss_pred EEEEEeccCccccEEEEecCCceEEEEEecc--CCCCC--C---CChHHHHHHHHHHHhhCCCCCCCCCCCCC--CeeEE
Q 000831 9 LRFCIDRGGTFTDVYAEIPGQLEGQVLKLLS--VDPTN--Y---DDAPVEGIRRILEEYTGEKIPRTSKIPTD--KIEWI 79 (1264)
Q Consensus 9 ~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~s--t~p~d--~---~~~v~~gi~~~l~~~~~~~~~~~~~~~~~--~i~~i 79 (1264)
+.||||+|.|.+-++++|.+|+++...+.+. +.|.+ . ++...+++.++++++..+ ....+. +|..|
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~-----~~~~~~~~~I~aI 77 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKK-----LREKGPSFKIKAI 77 (504)
T ss_pred EEEEEecCCCceEEEEECCCCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHH-----cCCCCccCceEEE
Confidence 8999999999999999998888666655532 11211 0 112355555555544321 112233 67777
Q ss_pred EEehhHH
Q 000831 80 RMGTTVA 86 (1264)
Q Consensus 80 ~~GTT~~ 86 (1264)
.++|+..
T Consensus 78 gis~q~~ 84 (504)
T PTZ00294 78 GITNQRE 84 (504)
T ss_pred EeecCcc
Confidence 7777543
No 123
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional
Probab=27.10 E-value=1.2e+02 Score=38.79 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=42.0
Q ss_pred ccccccceeeCCCCCeeeecCCCceeeccchHHHHHHHHHccCCCCCCcEEEecCCCCCCCCCCCeEEEEeeeeCCeEEE
Q 000831 768 ERLDFSCALFGPDGGLVANAPHVPVHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHPCAGGSHLPDITVITPVFDNGKLVF 847 (1264)
Q Consensus 768 e~~D~s~aI~d~~G~lva~~~~ip~h~gs~~~~v~~il~~~~~~l~pGDv~i~NDPy~Gg~Hl~Dv~~~~PVF~~Gelv~ 847 (1264)
|..=+-++|||++|.++|++.. ...+|..+. .|.|-.++ ..-..++-|||.++.++|
T Consensus 84 ~~~vlDAsiY~~~G~lla~s~~--------~~~~r~~l~-------------l~~~~~~~--~~~qQiVePi~~~~~~~G 140 (562)
T PRK14061 84 ESRILDAGVYDEQGDLIARSGE--------SVEVRDRLA-------------LDGKKAGG--YFNQQIVEPIAGKNGPLG 140 (562)
T ss_pred CceEeeeeeecCCCCEEEecCC--------cccHHHHhc-------------CCCcccCC--ccceeEEEEecCCCCceE
Confidence 4444779999999999999752 234566552 23344321 334579999999999999
Q ss_pred EEec
Q 000831 848 FVAS 851 (1264)
Q Consensus 848 ~~~~ 851 (1264)
|.=.
T Consensus 141 flRi 144 (562)
T PRK14061 141 YLRL 144 (562)
T ss_pred EEEE
Confidence 9643
No 124
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=26.43 E-value=2.4e+02 Score=35.10 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=62.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcccccCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCch-
Q 000831 418 EDQPLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAG- 496 (1264)
Q Consensus 418 g~~~ld~~~a~~a~~~la~~lg~~~~~~~~~~~gl~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag- 496 (1264)
|+...|...++.+|--+....|. ...-+..+.+.+|++=..-.+...++.+....|..++ .|.+.||+.
T Consensus 318 ger~~~~~~arg~~~gl~~~~G~--------~~~~~~~~l~RAvlEgva~~~r~~l~~l~~~~g~~~~--~i~~~GGga~ 387 (471)
T PRK10640 318 DDRFINPPSMCSEIQAACRETAQ--------PVPESDAELARCIFDSLALLYADVLHELAQLRGEPFS--QLHIVGGGCQ 387 (471)
T ss_pred cccccCchhhHHHHHHHHHHhCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--eEEEECChhh
Confidence 34445655677777554444331 1123678889999988888888888877654465444 344555542
Q ss_pred -HHHHHHHHHHcCCCEEEECCCCCccccccccccce
Q 000831 497 -PQHACAIARSLGMREVLIHRFCGILSAYGMGLADV 531 (1264)
Q Consensus 497 -~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ad~ 531 (1264)
++..-.+|+.||++ |..++. -.+|+|+++.-.
T Consensus 388 s~~w~Qi~ADvlg~p-V~~~~~--ea~alGaa~~a~ 420 (471)
T PRK10640 388 NALLNQLCADACGIR-VIAGPV--EASTLGNIGIQL 420 (471)
T ss_pred hHHHHHHHHHHhCCC-eeeCCh--hHHHHHHHHHHH
Confidence 22334578999988 455543 366888876543
No 125
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=26.18 E-value=66 Score=37.03 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.2
Q ss_pred CCCCEEEEecCCCceEeeeec-cccc
Q 000831 310 TEKPLIGFDMGGTSTDVSRYA-GSYE 334 (1264)
Q Consensus 310 g~~~~I~~DmGGTStDv~li~-G~~~ 334 (1264)
..++.+++||||-||.+++.+ |++.
T Consensus 110 ~~~~~lviDIGGGStEl~~~~~~~~~ 135 (285)
T PF02541_consen 110 PDKNGLVIDIGGGSTELILFENGKVV 135 (285)
T ss_dssp TTSSEEEEEEESSEEEEEEEETTEEE
T ss_pred ccCCEEEEEECCCceEEEEEECCeee
Confidence 457899999999999999995 6663
No 126
>PRK13320 pantothenate kinase; Reviewed
Probab=26.02 E-value=1.8e+02 Score=33.08 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=22.8
Q ss_pred cEEEEEeccCccccEEEEecCCceEEEEEec
Q 000831 8 KLRFCIDRGGTFTDVYAEIPGQLEGQVLKLL 38 (1264)
Q Consensus 8 ~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~ 38 (1264)
+|.+.||+|-|++..-+++ +++++...+.+
T Consensus 2 ~M~L~iDiGNT~ik~~~~~-~~~~~~~~~~~ 31 (244)
T PRK13320 2 SMNLVIDIGNTTTKLAVFE-GDELLEVFVVS 31 (244)
T ss_pred ceEEEEEeCCCcEEEEEEE-CCEEEEEEEEc
Confidence 4689999999999999996 44534555663
No 127
>PRK04123 ribulokinase; Provisional
Probab=25.58 E-value=2e+02 Score=36.50 Aligned_cols=86 Identities=13% Similarity=-0.007 Sum_probs=51.4
Q ss_pred CcEEEEEeccCccccEEEEe-cCCceEEEEEeccC--------CCCC--C---CChHHHHHHHHHHHhhCCCCCCCCCCC
Q 000831 7 EKLRFCIDRGGTFTDVYAEI-PGQLEGQVLKLLSV--------DPTN--Y---DDAPVEGIRRILEEYTGEKIPRTSKIP 72 (1264)
Q Consensus 7 ~~~~iGIDvGGTfTD~v~~~-~~g~~~~~~K~~st--------~p~d--~---~~~v~~gi~~~l~~~~~~~~~~~~~~~ 72 (1264)
+.|.||||+|.|.+-++++| .+|+++...+.+.. .|.+ . +..+.+++.++++++.++ .+++
T Consensus 2 ~~~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~-----~~~~ 76 (548)
T PRK04123 2 MAYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKE-----AGVD 76 (548)
T ss_pred CcEEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHH-----cCCC
Confidence 35899999999999999999 48885555544221 0110 0 122456666665554322 2345
Q ss_pred CCCeeEEEEehhHHhhHhhhcCCCc
Q 000831 73 TDKIEWIRMGTTVATNALLERKGER 97 (1264)
Q Consensus 73 ~~~i~~i~~GTT~~tNAller~g~~ 97 (1264)
+++|..|.++++..+=.++-++|..
T Consensus 77 ~~~I~aIgis~~~~~~v~~D~~G~p 101 (548)
T PRK04123 77 PAAVVGIGVDFTGSTPAPVDADGTP 101 (548)
T ss_pred hhhEEEEEEecccceeEEECCCCCE
Confidence 5678888888854443344444433
No 128
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.75 E-value=1.9e+02 Score=32.32 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=37.5
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCcHHHHHHHHHHHh----cCCccEEEeec
Q 000831 166 RVVKPVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALG----LGFRHVSLSSA 225 (1264)
Q Consensus 166 ~v~~plde~~v~~~~~~l~~~gv~avaV~~l~S~~np~hE~~v~ei~~~----~~~~~VtlS~e 225 (1264)
.++-.+++.++-+.++++..-+++++-|++.+- |..+|+.+ .|. ||..|..
T Consensus 158 ~eigr~~P~~~y~lAk~~~~~~~DaiFiSCTnl--------Rt~eii~~lE~~~G~-PVvsSN~ 212 (238)
T COG3473 158 LEIGRQEPWAVYRLAKEVFTPDADAIFISCTNL--------RTFEIIEKLERDTGV-PVVSSNQ 212 (238)
T ss_pred chhcccChHHHHHHHHHhcCCCCCeEEEEeecc--------ccHHHHHHHHHHhCC-ceeeccH
Confidence 456677889999999999999999999997663 33344443 377 6765654
No 129
>PF09663 Amido_AtzD_TrzD: Amidohydrolase ring-opening protein (Amido_AtzD_TrzD); InterPro: IPR014086 Members of this family are ring-opening amidohydrolases, including cyanuric acid amidohydrolase (3.5.2.15 from EC) (AtzD and TrzD) and barbiturase. Note that barbiturase does not act as defined for 3.5.2.1 from EC (barbiturate + water = malonate + urea) but rather catalyses the ring opening of barbiturase acid to ureidomalonic acid [].; GO: 0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
Probab=24.45 E-value=2.7e+02 Score=33.32 Aligned_cols=134 Identities=10% Similarity=0.108 Sum_probs=74.2
Q ss_pred HHcCccCCCCCCCcC----CCCCCCCCCHHHHHHHHHH-HHHHHhcccccCCCCCCCCCHHHHHHHHHHHHHHHhhHHHH
Q 000831 400 LILGFVIPDYFPSIF----GPNEDQPLDINATREKFQK-LASEINSYRKSQDPSVKDMTVEDIALGFVNVANETMCRPIR 474 (1264)
Q Consensus 400 l~lG~l~p~~fl~~~----g~~g~~~ld~~~a~~a~~~-la~~lg~~~~~~~~~~~gl~~eeaA~~i~~~a~~~m~~~i~ 474 (1264)
+--|.++|.....++ |.|+-..+-+..|-.++++ |+++++ ++++|+...|
T Consensus 21 i~~G~i~p~~IvAviGKTEGNG~VNDfTR~~A~~a~~~~L~~~~~------------~~~~~v~~~i------------- 75 (365)
T PF09663_consen 21 IDSGAIDPADIVAVIGKTEGNGCVNDFTRGYATRALRTLLAEHLG------------CSPEEVEARI------------- 75 (365)
T ss_pred HHcCCCChhhEEEEEEeccCCCcccchhHHHHHHHHHHHHHHhcC------------CCHHHHhccc-------------
Confidence 334666666544332 4355567889999999987 888876 7888876333
Q ss_pred HHHHHhCCCCCCceEEEEcCchHHHHHHHHHHcCCCEEEECCCCCcccccccccc----ceEEEEEEEEeecCCCCCHHH
Q 000831 475 QLTEMKGHETRNHALACFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGLA----DVVEEAQEPYSAVYGPESVLE 550 (1264)
Q Consensus 475 ~~~~~~G~dpr~~~lv~~GGag~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~a----d~~~~~~~~~~~~~~~~~~~~ 550 (1264)
.++-.||.-+.++|- .-||..-..--. ..+-.+-......+.+++.-
T Consensus 76 -------------~~vmSGGTeGvlSPH---------------~tVF~~~~~~~~~~~~~~~Lavg~a~T~~~~PEeiG- 126 (365)
T PF09663_consen 76 -------------AFVMSGGTEGVLSPH---------------ATVFARRPADAPPAPDEKRLAVGVARTRDFLPEEIG- 126 (365)
T ss_pred -------------cEEEecCcCcccCCc---------------EEEEEecCccccCCCCCcceEEEEecCCCCChHHcC-
Confidence 678888874443332 222222111111 01111111111112111111
Q ss_pred HHHHHHHHHHHHHHHHHHcCC-CCCcEEEEEEEeeeecCeeEEEEEeccc
Q 000831 551 VSRREGILSKQVKQKLQEQGF-REESITTETYLNLRYEGTDTAIMVKKRI 599 (1264)
Q Consensus 551 ~~~~~~~l~~~a~~~l~~~G~-~~~~i~~~~~~d~rY~gQ~~~i~v~~~~ 599 (1264)
....+++..+-.++.|.+.|+ +|+++-|. +++-|+.+
T Consensus 127 r~aqV~~vA~aV~~aM~~AGI~dpaDVH~V------------QvKcPLLT 164 (365)
T PF09663_consen 127 RMAQVEEVAAAVRAAMADAGITDPADVHFV------------QVKCPLLT 164 (365)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCChhheeeE------------EecCCcCC
Confidence 234566677777888899999 67777776 46667754
No 130
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=24.21 E-value=1.2e+02 Score=37.47 Aligned_cols=79 Identities=18% Similarity=0.119 Sum_probs=0.0
Q ss_pred EEEeccCccccEEEEecC---CceE-EEEEeccCCCCCCCC-------hHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEE
Q 000831 11 FCIDRGGTFTDVYAEIPG---QLEG-QVLKLLSVDPTNYDD-------APVEGIRRILEEYTGEKIPRTSKIPTDKIEWI 79 (1264)
Q Consensus 11 iGIDvGGTfTD~v~~~~~---g~~~-~~~K~~st~p~d~~~-------~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~i 79 (1264)
++||+|.|+|-++++|.+ |++. .....+.+....... .+.+.+.++++++. ....+|..|
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~---------~~~~~i~~I 71 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVD---------AEGIAPDSI 71 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHh---------ccCCCceEE
Q ss_pred EEehhHHhhHhhhcCCCcE
Q 000831 80 RMGTTVATNALLERKGERI 98 (1264)
Q Consensus 80 ~~GTT~~tNAller~g~~v 98 (1264)
.++++..+=.++.++|..+
T Consensus 72 gis~q~~~~v~~D~~G~~l 90 (454)
T TIGR02627 72 GIDTWGVDFVLLDQNGQRV 90 (454)
T ss_pred EEeccceeEEEEcCCCCCc
No 131
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=23.83 E-value=1e+02 Score=36.51 Aligned_cols=53 Identities=19% Similarity=0.369 Sum_probs=34.4
Q ss_pred cceecccchhHHHHHHHhccccCCCCCEEEEecCCCceEeeeec-cccceeeeeEEccE
Q 000831 287 HKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA-GSYEQVLETQIAGA 344 (1264)
Q Consensus 287 v~ti~SGPaagv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~-G~~~~~~~~~i~g~ 344 (1264)
.+++..|--+ ||..+++ .....++-+||||-||..++.+ |+..-+.--.|+|.
T Consensus 125 LESiIAGkGa---GA~t~Se--qr~t~v~NlDIGGGTtN~slFD~Gkv~dTaCLdiGGR 178 (473)
T COG4819 125 LESIIAGKGA---GAQTLSE--QRLTRVLNLDIGGGTTNYSLFDAGKVSDTACLDIGGR 178 (473)
T ss_pred HHHHhccCCc---cccchhh--hhceEEEEEeccCCccceeeecccccccceeeecCcE
Confidence 5566666543 3444542 2345688999999999999996 98754443445443
No 132
>COG4334 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.97 E-value=1.2e+02 Score=30.36 Aligned_cols=32 Identities=13% Similarity=0.295 Sum_probs=24.6
Q ss_pred cCeeEEEEE-ecccccCCCcccHHHHHHHHHHHHhccccC
Q 000831 587 EGTDTAIMV-KKRIAEDGSGCGYAVDFEKLFQQEYGFKLQ 625 (1264)
Q Consensus 587 ~gQ~~~i~v-~~~~~~~~~~~~l~~~F~~~h~~~yg~~~~ 625 (1264)
.|..++++. |+. .++.++|.+.|+++||+...
T Consensus 75 aG~t~~V~FEPVt-------gainD~id~~Yr~ky~~S~y 107 (131)
T COG4334 75 AGKTYQVEFEPVT-------GAINDKIDDSYRQKYGYSWY 107 (131)
T ss_pred cceEEEEEEeecc-------cchHHHHHHHHHhhcccccc
Confidence 466666666 443 37899999999999999863
No 133
>PRK02794 DNA polymerase IV; Provisional
Probab=22.85 E-value=6.7e+02 Score=30.68 Aligned_cols=83 Identities=12% Similarity=0.134 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEEeeeec---CeeEEEEEecccccCCCcccHHHHHHHHHHHHhcc
Q 000831 546 ESVLEVSRREGILSKQVKQKLQEQGFREESITTETYLNLRYE---GTDTAIMVKKRIAEDGSGCGYAVDFEKLFQQEYGF 622 (1264)
Q Consensus 546 ~~~~~~~~~~~~l~~~a~~~l~~~G~~~~~i~~~~~~d~rY~---gQ~~~i~v~~~~~~~~~~~~l~~~F~~~h~~~yg~ 622 (1264)
.+.+.+...+.+|-++...+|.+.|....++++. ++|. .....++++.+.. +...|.+...+..++.+
T Consensus 287 ~~~~~l~~~l~~L~~~l~~rL~~~~~~~~~l~l~----l~~~~~~~~~~~~~l~~pt~---~~~~l~~~~~~ll~~~~-- 357 (419)
T PRK02794 287 SDFEDLEPILWRLSEKVSRRLKAAGLAGRTVTLK----LKTADFRLRTRRRTLEDPTQ---LADRIFRTARELLEKET-- 357 (419)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEE----EEECCCCceEEEEECCCCcC---CHHHHHHHHHHHHHhcc--
Confidence 4678899999999999999999999887766665 3453 3444455544432 23466666666666642
Q ss_pred ccCCCcEEEEEEEEEEE
Q 000831 623 KLQNRNILVCDVRVRGI 639 (1264)
Q Consensus 623 ~~~~~~vei~~~rv~~~ 639 (1264)
...+|..+.+++...
T Consensus 358 --~~~~vr~igv~~~~l 372 (419)
T PRK02794 358 --DGTAFRLIGIGVSDL 372 (419)
T ss_pred --cCCCEEEEEEEEecC
Confidence 235676666666543
No 134
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=22.80 E-value=1.8e+02 Score=36.83 Aligned_cols=85 Identities=14% Similarity=0.047 Sum_probs=53.0
Q ss_pred EEEEEeccCccccEEEEe-cCCceEEEEEeccC-------CCC-------C-C---CChHHHHHHHHHHHhhCCCCCCCC
Q 000831 9 LRFCIDRGGTFTDVYAEI-PGQLEGQVLKLLSV-------DPT-------N-Y---DDAPVEGIRRILEEYTGEKIPRTS 69 (1264)
Q Consensus 9 ~~iGIDvGGTfTD~v~~~-~~g~~~~~~K~~st-------~p~-------d-~---~~~v~~gi~~~l~~~~~~~~~~~~ 69 (1264)
|.||||+|.|.|-++++| .+|+++.....+.. .|+ . . ++...+++.++++++.++ .
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~-----~ 76 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAE-----L 76 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHH-----c
Confidence 679999999999999999 78885545443221 122 0 0 222455555555554432 2
Q ss_pred CCCCCCeeEEEEehhHHhhHhhhcCCCcE
Q 000831 70 KIPTDKIEWIRMGTTVATNALLERKGERI 98 (1264)
Q Consensus 70 ~~~~~~i~~i~~GTT~~tNAller~g~~v 98 (1264)
++++++|..|.++++..+=.++.++|..+
T Consensus 77 ~~~~~~I~aI~~s~q~~s~v~~D~~g~pl 105 (536)
T TIGR01234 77 GVDPADVVGIGVDFTACTPAPIDSDGNPL 105 (536)
T ss_pred CCCHHHEEEEEEecCcceeEEECCCCCEe
Confidence 34556799999888755545555555554
No 135
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=22.54 E-value=71 Score=35.37 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=61.3
Q ss_pred CCCCCCceEEEEcC--chHHHHHHH--HHHcCCCEEEECCCCCccccccccccceEEEEEEEEeecC--CCCCHHHHHHH
Q 000831 481 GHETRNHALACFGG--AGPQHACAI--ARSLGMREVLIHRFCGILSAYGMGLADVVEEAQEPYSAVY--GPESVLEVSRR 554 (1264)
Q Consensus 481 G~dpr~~~lv~~GG--ag~~~a~~~--a~~Lgi~~vivP~~~~v~sA~G~~~ad~~~~~~~~~~~~~--~~~~~~~~~~~ 554 (1264)
+-|-.|.+++++|- ++..|+-.+ |+++|++ |-+-+++++.||+|++--.+ ..+-+++.+.+ +..-++. -
T Consensus 72 ~ad~~dVa~LVVGdPfgATTHsDlvlRAk~~~ip-v~vIHNASimNavG~CGLql-Y~fGetVSiv~ftd~wrP~S---f 146 (272)
T KOG3123|consen 72 EADKEDVAFLVVGDPFGATTHSDLVLRAKELGIP-VEVIHNASIMNAVGCCGLQL-YNFGETVSIVFFTDNWRPES---F 146 (272)
T ss_pred hhhhcceEEEEecCcccccchhhhheehhhcCCC-eEEEechHHHhhhccceeee-eccCcEEEEEEEccCcCchh---H
Confidence 34567888888885 345677655 7899999 45558899999999987766 44555555543 2222222 2
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEEEeeeecCeeEEEE
Q 000831 555 EGILSKQVKQKLQEQGFREESITTETYLNLRYEGTDTAIM 594 (1264)
Q Consensus 555 ~~~l~~~a~~~l~~~G~~~~~i~~~~~~d~rY~gQ~~~i~ 594 (1264)
++..++. ++.|. ..-.-+|+|-..|.+|--
T Consensus 147 ydkI~~N-----r~~gl-----HTLcLLDIkvkEqs~enl 176 (272)
T KOG3123|consen 147 YDKIKEN-----RQLGL-----HTLCLLDIKVKEQSVENL 176 (272)
T ss_pred HHHHHHh-----hhcCc-----eeEEEEEEeeccHHHHHH
Confidence 2333221 22333 233568899888877643
No 136
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.36 E-value=51 Score=42.84 Aligned_cols=20 Identities=40% Similarity=0.370 Sum_probs=16.9
Q ss_pred EEEEeccCccccEEEEecCCc
Q 000831 10 RFCIDRGGTFTDVYAEIPGQL 30 (1264)
Q Consensus 10 ~iGIDvGGTfTD~v~~~~~g~ 30 (1264)
.|++|+|||.||+-.+. +|+
T Consensus 280 ~i~~DmGGTStDva~i~-~G~ 299 (674)
T COG0145 280 AIVFDMGGTSTDVALII-DGE 299 (674)
T ss_pred EEEEEcCCcceeeeeee-cCc
Confidence 79999999999999884 444
No 137
>PF12390 Se-cys_synth_N: Selenocysteine synthase N terminal
Probab=21.90 E-value=1.3e+02 Score=24.58 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHH
Q 000831 937 SLIKELIEQYGLKTVQAYMTYVQLNA 962 (1264)
Q Consensus 937 ~Rl~eLieryG~d~v~~~~~~~~d~s 962 (1264)
..+.+++++||...|.+++++.+|..
T Consensus 14 ~~~~~l~~~~~r~~v~~~vR~~ld~~ 39 (40)
T PF12390_consen 14 PEIQDLIERYGRPLVVDAVREVLDEL 39 (40)
T ss_pred hhhHHHHHHcCHHHHHHHHHHHHHHh
Confidence 35788999999999999999988763
No 138
>PRK10331 L-fuculokinase; Provisional
Probab=21.56 E-value=2.2e+02 Score=35.26 Aligned_cols=75 Identities=12% Similarity=0.105 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCch--HHHHHHHHHHcCCCEEEECCCCCcccccccccc
Q 000831 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1264)
Q Consensus 452 l~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag--~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~a 529 (1264)
.+.++.+.++++=..-++...++.+....|..++ .|.+.||+. ++..-.+|+.||++ |.++.... .+|+|+++.
T Consensus 358 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~~~~~~--~i~~~GGga~s~~w~Qi~Advlg~p-V~~~~~~e-~~a~GaA~l 433 (470)
T PRK10331 358 TTRGHFYRAALEGLTAQLKRNLQVLEKIGHFKAS--ELLLVGGGSRNALWNQIKANMLDIP-IKVLDDAE-TTVAGAAMF 433 (470)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--eEEEEcccccCHHHHHHHHHhcCCe-eEecCccc-chHHHHHHH
Confidence 3567777777766666666666665433244443 345555542 22234578889988 67777544 668888765
Q ss_pred c
Q 000831 530 D 530 (1264)
Q Consensus 530 d 530 (1264)
-
T Consensus 434 a 434 (470)
T PRK10331 434 G 434 (470)
T ss_pred H
Confidence 3
No 139
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=21.50 E-value=2.1e+02 Score=35.68 Aligned_cols=75 Identities=20% Similarity=0.131 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCch--HHHHHHHHHHcCCCEEEECCCCCcccccccccc
Q 000831 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1264)
Q Consensus 452 l~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag--~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~a 529 (1264)
.+..+.+.++++=..-++...++.+....|..++ .|.+.||+. ++..-.+|+.+|.+ |.++..+ -.+|+|+++.
T Consensus 368 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~--~i~~~GGga~s~~w~Qi~ADv~g~p-v~~~~~~-e~~alGaA~~ 443 (493)
T TIGR01311 368 TTKAHIARAALEAIAFQTRDVLEAMEKDAGVEIT--KLRVDGGMTNNNLLMQFQADILGVP-VVRPKVT-ETTALGAAYA 443 (493)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--eEEEecccccCHHHHHHHHHhcCCe-eEecCCC-cchHHHHHHH
Confidence 4567777777777777777777776544465444 345555542 23345689999988 6666654 4678998775
Q ss_pred c
Q 000831 530 D 530 (1264)
Q Consensus 530 d 530 (1264)
-
T Consensus 444 a 444 (493)
T TIGR01311 444 A 444 (493)
T ss_pred H
Confidence 4
No 140
>PTZ00288 glucokinase 1; Provisional
Probab=21.46 E-value=1.5e+02 Score=36.34 Aligned_cols=38 Identities=8% Similarity=-0.014 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCchH
Q 000831 456 DIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGP 497 (1264)
Q Consensus 456 eaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag~ 497 (1264)
+.|..+++.....+...+..+... +||+. ++..||..+
T Consensus 298 ~~A~~al~~f~~~LG~~~~nlal~--l~P~~--VvIgGGi~~ 335 (405)
T PTZ00288 298 VAAVKAMKRHYKYLMRLAAEISMQ--FLPLT--VVLMGDNIV 335 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HCCCE--EEEECccHH
Confidence 456678888888888888887765 67775 445455433
No 141
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=21.20 E-value=3.2e+02 Score=32.35 Aligned_cols=110 Identities=10% Similarity=0.039 Sum_probs=60.6
Q ss_pred cceeecccCceeEEecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCcHH----------HHHHHHHHHhcCCccEEE-
Q 000831 154 ESLVKGVSGELVRVVKPVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQH----------EMAVEKLALGLGFRHVSL- 222 (1264)
Q Consensus 154 ~~~~~Gg~~~~G~v~~plde~~v~~~~~~l~~~gv~avaV~~l~S~~np~h----------E~~v~ei~~~~~~~~Vtl- 222 (1264)
..+++|...+ .-+..+..+..++++++.|+.+|.+-.-|.+..|+. =.+.-+++++.|+ +|.+
T Consensus 9 ~~~~~Ge~hy-----~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl-~vilr 82 (319)
T PF01301_consen 9 FFILSGEFHY-----FRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGL-YVILR 82 (319)
T ss_dssp E-EEEEEE-G-----GGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT--EEEEE
T ss_pred EEEEEeeecc-----ccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCc-EEEec
Confidence 4556665553 223478899999999999999999998875554421 1244566677665 3433
Q ss_pred -eecccCcC-------------CcccchhhhhhhhcccHHHHHHHHHHHHHHhhcCC--CceEEEEE
Q 000831 223 -SSALTPMV-------------RAVPRGLTASVDAYLTPVIKEYLSGFMSKFDEGLA--KVNVLFMQ 273 (1264)
Q Consensus 223 -S~ei~p~~-------------~e~eR~~ttvlNAyl~p~~~~~l~~l~~~l~~~~~--~~~l~i~~ 273 (1264)
+.-|..++ ...-|++- ......+++|++.|.+.++.... .+|+.++|
T Consensus 83 pGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~----~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQ 145 (319)
T PF01301_consen 83 PGPYICAEWDNGGLPAWLLRKPDIRLRTND----PPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQ 145 (319)
T ss_dssp EES---TTBGGGG--GGGGGSTTS-SSSS-----HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEE
T ss_pred ccceecccccchhhhhhhhccccccccccc----hhHHHHHHHHHHHHHHHHHhhhhcCCCceehhh
Confidence 22222222 33456554 33344577777777777776322 25777777
No 142
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=21.08 E-value=2.1e+02 Score=35.43 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCceEEEEcCch--HHHHHHHHHHcCCCEEEECCCCCccccccccccc
Q 000831 453 TVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAYGMGLAD 530 (1264)
Q Consensus 453 ~~eeaA~~i~~~a~~~m~~~i~~~~~~~G~dpr~~~lv~~GGag--~~~a~~~a~~Lgi~~vivP~~~~v~sA~G~~~ad 530 (1264)
+..+...++++=..-.+...++.+....|..++ .+.+.||+. ++..-.+|+.+|++ |.++..+. .+|+|+++.-
T Consensus 363 ~~~~l~rAvlEgia~~~r~~~e~l~~~~~~~~~--~i~~~GGga~s~~w~Qi~Adv~g~p-V~~~~~~e-~~~lGaA~~a 438 (465)
T TIGR02628 363 TRGHIYRAALEGLTAQLKRNLQMLEQIGQFKAS--ELLLVGGGSKNTLWNQIRANMLDIP-VKVVDDAE-TTVAGAAMFG 438 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--eEEEecCccCCHHHHHHhhhhcCCe-eEeccCCc-chHHHHHHHH
Confidence 456666666665555666666555432244443 355555542 22224578899987 77777654 5688887643
No 143
>PRK06033 hypothetical protein; Validated
Probab=20.64 E-value=1.8e+02 Score=27.64 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=23.6
Q ss_pred ceeeccchHHHHHHHHHccCCCCCCcEEEecCCC
Q 000831 791 PVHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHPC 824 (1264)
Q Consensus 791 p~h~gs~~~~v~~il~~~~~~l~pGDv~i~NDPy 824 (1264)
-+.+|....+++.++ +|++|||+-.|-+.
T Consensus 12 ~v~Lg~~~i~l~dlL-----~L~~GDVI~L~~~~ 40 (83)
T PRK06033 12 MVVLGRSSMPIHQVL-----RMGRGAVIPLDATE 40 (83)
T ss_pred EEEEecccccHHHHh-----CCCCCCEEEeCCCC
Confidence 355777788888888 79999999998754
No 144
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=20.13 E-value=2.1e+02 Score=33.60 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEec---CCCCCcHHHHHHHHHHHhc--CCccEEE
Q 000831 171 VNEKTLEPLLKGLLEKGISCLAVVLM---HSYTFPQHEMAVEKLALGL--GFRHVSL 222 (1264)
Q Consensus 171 lde~~v~~~~~~l~~~gv~avaV~~l---~S~~np~hE~~v~ei~~~~--~~~~Vtl 222 (1264)
+|++.+++.++.+.+.|+++|.+++- +...+++.-+++-+.+.+. +-.||..
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpvia 78 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIA 78 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEE
Confidence 58999999999999999999999965 6666776666666766664 3235544
No 145
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=20.09 E-value=2.2e+02 Score=35.64 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=46.9
Q ss_pred EEEEEeccCccccEEEEecCCceEEEEEecc--CCCCC--C---CChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEE
Q 000831 9 LRFCIDRGGTFTDVYAEIPGQLEGQVLKLLS--VDPTN--Y---DDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRM 81 (1264)
Q Consensus 9 ~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~s--t~p~d--~---~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~i~~ 81 (1264)
|.||||+|+|++-++++|.+|+++...+.+. ++|.+ . .+.+.+.+..+++++.++ ...+ ++|..|-+
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~-----~~~~-~~I~~Igi 74 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSIN-----LEDE-DEILFVSF 74 (505)
T ss_pred CEEEEeccccceEEEEEcCCCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHh-----CCCc-CceEEEEE
Confidence 4699999999999999998888665555521 11211 1 223456666666655432 1122 56888888
Q ss_pred ehhHHhhHhhh
Q 000831 82 GTTVATNALLE 92 (1264)
Q Consensus 82 GTT~~tNAlle 92 (1264)
+++..+=.++-
T Consensus 75 s~~~~~~v~~D 85 (505)
T TIGR01314 75 STQMHSLIAFD 85 (505)
T ss_pred ecccceeEEEC
Confidence 77544433333
No 146
>PRK08983 fliN flagellar motor switch protein; Validated
Probab=20.01 E-value=1.7e+02 Score=30.20 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=34.1
Q ss_pred CceeeccchHHHHHHHHHccCCCCCCcEEEecCCCCCCCCCCCeEEEEeeeeCCeEEEEEec
Q 000831 790 VPVHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHPCAGGSHLPDITVITPVFDNGKLVFFVAS 851 (1264)
Q Consensus 790 ip~h~gs~~~~v~~il~~~~~~l~pGDv~i~NDPy~Gg~Hl~Dv~~~~PVF~~Gelv~~~~~ 851 (1264)
+-+.+|.....++.++ +|++|||+..|-+..- -..|+.+|+++|++-.
T Consensus 55 v~v~LG~t~ltl~dlL-----~L~~GDVI~Ld~~~dd---------pv~v~Vng~~~f~G~~ 102 (127)
T PRK08983 55 ISMEVGRSFISIRNLL-----QLNQGSVVELDRVAGE---------PLDVMVNGTLIAHGEV 102 (127)
T ss_pred EEEEEecCcccHHHHh-----CCCCCCEEEeCCCCCC---------CEEEEECCEEEEEEEE
Confidence 4456778888999988 7999999999877531 1245567777666443
Done!