Query 000831
Match_columns 1264
No_of_seqs 270 out of 2138
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 17:21:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000831.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_600-604//hhsearch_pdb/000831hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cet_A Conserved archaeal prot 1.0 1 1 178.8 14.1 240 220-529 55-321 (334)
2 2zf5_O Glycerol kinase; hypert 1.0 1 1 49.7 2.4 84 7-96 2-93 (497)
3 3l0q_A Xylulose kinase; xlylul 1.0 1 1 48.4 2.8 89 4-99 1-97 (554)
4 3hz6_A Xylulokinase; xylulose, 1.0 1 1 48.0 2.7 85 4-95 1-93 (511)
5 3ifr_A Carbohydrate kinase, FG 1.0 1 1 48.0 2.3 87 3-95 2-96 (508)
6 3h3n_X Glycerol kinase; ATP-bi 1.0 1 1 44.7 2.7 75 452-530 372-448 (506)
7 4e1j_A Glycerol kinase; struct 1.0 1 1 43.4 5.0 79 1-85 20-105 (520)
8 2itm_A Xylulose kinase, xylulo 1.0 1 1 42.3 2.8 81 9-97 1-89 (484)
9 1zc6_A Probable N-acetylglucos 1.0 1 1 42.2 6.3 53 8-60 11-63 (305)
10 2p3r_A Glycerol kinase; glycer 1.0 1 1 42.0 3.0 74 6-85 1-82 (510)
No 1
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=1.00 E-value=1 Score=178.79 Aligned_cols=240 Identities=15% Similarity=0.157 Sum_probs=178.2
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC--CCCEECCCCHHH
Q ss_conf 998302358678203424456661220999999999999986059976099997488733322224--331341464168
Q 000831 220 VSLSSALTPMVRAVPRGLTASVDAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFS--GHKAVLSGPAGG 297 (1264)
Q Consensus 220 Vt~S~ei~p~~~e~eR~~TtvlNAyl~p~~~~yl~~l~~~l~~~~~~~~l~i~~sdGg~~~~~~~~--pv~ti~SGPaag 297 (1264)
||++-|+.-. |-.|..- +...++.+++.| .++++|.+.|||.++.++++ |+.++.|||+|+
T Consensus 55 vtMTgELaD~--f~~k~eG----------V~~I~~~v~~~~-----~~~v~i~~~dGG~l~~~~a~~~p~~~aaanw~AS 117 (334)
T 3cet_A 55 LVTTAELADS--YETKKEG----------VDNILNAAESAF-----GSNISVFDSNGNFISLESAKTNNMKVSASNWCGT 117 (334)
T ss_dssp EEECCC--------CTTHH----------HHHHHHHHHHHH-----TTCEEEECSSSCEEETTHHHHCGGGTBCCSSHHH
T ss_pred EEECHHHHHH--HCCHHHH----------HHHHHHHHHHHC-----CCCEEEEECCCCCCCHHHHHHCHHHHHHCCHHHH
T ss_conf 9943214534--1588887----------999999999865-----8866999568883458998667798986699999
Q ss_pred HHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEC-CCCCEEE----------EEEECCEEEEECCEEEEEEECCCCCEEEE
Q ss_conf 989998403547999989994477746763340-5001121----------03992089953210267871168807999
Q 000831 298 VVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA-GSYEQVL----------ETQIAGAIIQAPQLDINTVAAGGGSNLMF 366 (1264)
Q Consensus 298 v~Ga~~l~~~~~g~~~~i~~DiGGTStDv~li~-G~~~~~~----------~~~i~g~~~~~p~~dv~siGaGGGSi~~v 366 (1264)
+...+... . +|.|.+|||||||||..+. |+|.... ..+++.+++.++.+. +||+.||.|.
T Consensus 118 a~~~A~~~----~-~~~llvDIGsTTTDIipi~~G~pl~g~tD~eRL~~gElvy~G~~RT~V~aL~-~sv~~gG~~~--- 188 (334)
T 3cet_A 118 AKWVSKNI----E-ENCILVDMGSTTTDIIPIVEGKVVAEKTDLERLMNHELLYVGTLRTPISHLG-NTISFKGVDT--- 188 (334)
T ss_dssp HHHHHHHT----C-SSEEEEEECSSCEEEEEEETTEECCCSSHHHHHTTTSEECCCSSCCBGGGGC-SEEEETTEEE---
T ss_pred HHHHHHHC----C-CCEEEEECCCCHHHHHHHCCCEECCCCCHHHHHCCCCCEEECCCCCHHHHHH-HHCCCCCEEE---
T ss_conf 99999715----8-9989997586666564025881033577387750488279824047599885-5052389877---
Q ss_pred ECCEEEECCCCCCCCCCCCEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 49939986511355788410024997658579987185699888886899999889999999999999999720124699
Q 000831 367 QLGAFRVGPESVGAHPGPVCYRKGGDLAVTDANLILGFVIPDYFPSIFGPNEDQPLDINATREKFQKLASEINSYRKSQD 446 (1264)
Q Consensus 367 ~~g~l~VGP~SaGa~PGPacy~~GG~~TvTDa~l~lG~l~p~~f~~~~g~~g~~~Ld~~~a~~a~~~ia~~lg~~~~~~~ 446 (1264)
+|+||. -+|.+|++++||.++++.+. .... ....+.++.++++||+.++
T Consensus 189 -----~v~~E~--------------fATtaDa~~vLG~i~~~d~~--~~ta---Dg~~k~~~~~~~RLAr~vg------- 237 (334)
T 3cet_A 189 -----NVSSEY--------------FAITADISVVLEKVTTEEYT--CDTP---DGKGTDKRSSLVRISKVLC------- 237 (334)
T ss_dssp -----ECCCSS--------------CCBHHHHHHHTTSSCGGGCC--SCCT---TSCCCSHHHHHHHHHHTTT-------
T ss_pred -----EECCCC--------------CCCHHHHHHHHCCCCCCCCC--CCCC---CCCCCCHHHHHHHHHHHHC-------
T ss_conf -----665000--------------56688999981899964346--7676---7753369999999999858-------
Q ss_pred CCCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEE-----
Q ss_conf 9888999--------999999999999997669999988771888878239999292477799999983998798-----
Q 000831 447 PSVKDMT--------VEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQHACAIARSLGMREVL----- 513 (1264)
Q Consensus 447 ~~~~gl~--------~eeaA~~i~~ia~~~m~~~i~~~~~~~G~dpr~f~lv~~GGag~~ha~~la~~lgi~~Vi----- 513 (1264)
.+ +++.|..+++.....+.++++++..+.+.+ .++..|++ .-.+..+++. .+ ++
T Consensus 238 -----~D~~~~~~~~~~~lA~~~~~~q~~~I~~av~~v~~~~~~~----~vv~aG~G-~~L~~~la~~--~~-~~~~~~~ 304 (334)
T 3cet_A 238 -----SDLDQISEIDAENIAKNYYELWKELILENVENVAEKYGSK----KVVITGLG-ENILKDALAD--FE-VISVAER 304 (334)
T ss_dssp -----CCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----EEEEESTT-HHHHHHHTTT--SE-EEEHHHH
T ss_pred -----CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----EEEEECCC-HHHHHHHHHH--CC-EEEHHCC
T ss_conf -----8922247468999999999999999999999999752877----59996895-9999999864--78-0510101
Q ss_pred E-CCCCCCCCCCCCCCC
Q ss_conf 7-899984111123344
Q 000831 514 I-HRFCGILSAYGMGLA 529 (1264)
Q Consensus 514 v-P~~~~v~sA~G~~~a 529 (1264)
+ |+++.+++|+|++.-
T Consensus 305 i~~~~s~vapA~avA~l 321 (334)
T 3cet_A 305 YGKDVSLATPSFAVAEL 321 (334)
T ss_dssp HCHHHHHSHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHH
T ss_conf 48520020079999999
No 2
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=1.00 E-value=1 Score=49.65 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=52.7
Q ss_pred CCEEEEEECCCCCCCEEEEECCCCEEEEEEECCCC--CC------CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
Q ss_conf 83799982068554399990698048999925679--99------99990899999999986099878898889887018
Q 000831 7 EKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVD--PT------NYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEW 78 (1264)
Q Consensus 7 ~~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~--p~------~~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~ 78 (1264)
++|.+|||+|+|.+.++++|.+|+++...+.++.. |. | .+.+.+.+.++++++..+ .++++++|..
T Consensus 2 ~~~~lgiDiGtt~~k~~l~d~~g~~~~~~~~~~~~~~p~~g~~e~d-~~~~~~~~~~~i~~~~~~-----~~~~~~~i~~ 75 (497)
T 2zf5_O 2 EKFVLSLDEGTTSARAIIFDRESNIHGIGQYEFPQHYPRPGWVEHN-PEEIWDAQLRAIKDAIQS-----ARIEPNQIAA 75 (497)
T ss_dssp CCEEEEEEECSSEEEEEEECTTCCEEEEEEEECCCBCCSTTCCEEC-HHHHHHHHHHHHHHHHHH-----HTCCGGGEEE
T ss_pred CCEEEEEECCCCHHEEEEECCCCCEEEEEEECCCEECCCCCCEEEC-HHHHHHHHHHHHHHHHHH-----CCCCCCCEEE
T ss_conf 7389999627701189999899989999996042266999837888-999999999999999986-----5998023789
Q ss_pred EEEEHHHHHHHHHHCCCC
Q ss_conf 997025775675511798
Q 000831 79 IRMGTTVATNALLERKGE 96 (1264)
Q Consensus 79 i~hgTT~~tNAller~g~ 96 (1264)
|-.+++..+..++.++|.
T Consensus 76 Igis~~~~~~v~~D~~G~ 93 (497)
T 2zf5_O 76 IGVTNQRETTLVWDKDGK 93 (497)
T ss_dssp EEEEECSSCEEEECTTCC
T ss_pred EEEECCCCCEEEECCCCC
T ss_conf 998468773899979988
No 3
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=1.00 E-value=1 Score=48.41 Aligned_cols=89 Identities=8% Similarity=0.054 Sum_probs=54.2
Q ss_pred CCCCCEEEEEECCCCCCCEEEEECCCCEEEEEEECCC--CC------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 7888379998206855439999069804899992567--99------999990899999999986099878898889887
Q 000831 4 VKEEKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSV--DP------TNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDK 75 (1264)
Q Consensus 4 ~~~~~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st--~p------~~~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~ 75 (1264)
|+.++|.||||+|+|.+-++++|.+|+++...+.+.. .| +| ...+.+.+.++++++.++ .++.+.+
T Consensus 1 m~~~~~~lgIDiGtts~ka~l~d~~G~il~~~~~~~~~~~p~~g~~eqd-p~~~~~~~~~~i~~~~~~-----~~~~~~~ 74 (554)
T 3l0q_A 1 MSLASYFIGVDVGTGSARAGVFDLQGRMVGQASREITMFKPKADFVEQS-SENIWQAVCNAVRDAVNQ-----ADINPIQ 74 (554)
T ss_dssp ---CCEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCEEEETTEEEEC-HHHHHHHHHHHHHHHHHH-----HTCCGGG
T ss_pred CCCCCEEEEEEECCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHH-----CCCCHHH
T ss_conf 9878499999977613799999799989999997146546899861119-999999999999999997-----3999768
Q ss_pred EEEEEEEHHHHHHHHHHCCCCCEE
Q ss_conf 018997025775675511798299
Q 000831 76 IEWIRMGTTVATNALLERKGERIA 99 (1264)
Q Consensus 76 i~~i~hgTT~~tNAller~g~kvg 99 (1264)
|..|-.+++ .+=.++.++|..+.
T Consensus 75 I~~Igis~~-~~~v~~D~~G~pl~ 97 (554)
T 3l0q_A 75 VKGLGFDAT-CSLVVLDKEGNPLT 97 (554)
T ss_dssp EEEEEEEEC-SCEEEEETTSCBCC
T ss_pred EEEEEECCC-CCEEEECCCCCEEE
T ss_conf 899998689-85689889998801
No 4
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=1.00 E-value=1 Score=48.01 Aligned_cols=85 Identities=9% Similarity=-0.005 Sum_probs=52.6
Q ss_pred CCCCCEEEEEECCCCCCCEEEEECCCCEEEEEEECCC--CC------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 7888379998206855439999069804899992567--99------999990899999999986099878898889887
Q 000831 4 VKEEKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSV--DP------TNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDK 75 (1264)
Q Consensus 4 ~~~~~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st--~p------~~~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~ 75 (1264)
|+||+|.||||+|+|.+-++++|.+|+++...+.+.. .| +| .+.+.+.+.++++++. + .++++.+
T Consensus 1 ~~mm~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~d-p~~~~~~~~~~i~~~~-~-----~~~~~~~ 73 (511)
T 3hz6_A 1 MSLAFYIATFDIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQD-AGDWYDAVQRIASSWW-Q-----SGVDARR 73 (511)
T ss_dssp -CCCCEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBSTTSSCCEEC-HHHHHHHHHHHHHHHH-T-----TTCCGGG
T ss_pred CCCCCEEEEEEECCCCEEEEEECCCCCEEEEEEEECCEECCCCCCEEEC-HHHHHHHHHHHHHHHH-H-----CCCCHHH
T ss_conf 9623289999807872389999799989999996243343899977888-9999999999999998-5-----5998657
Q ss_pred EEEEEEEHHHHHHHHHHCCC
Q ss_conf 01899702577567551179
Q 000831 76 IEWIRMGTTVATNALLERKG 95 (1264)
Q Consensus 76 i~~i~hgTT~~tNAller~g 95 (1264)
|..|-.+++..+=.++.++|
T Consensus 74 I~~Igis~q~~~~v~~D~~G 93 (511)
T 3hz6_A 74 VSAIVLSGQMQNFLPLDQDH 93 (511)
T ss_dssp EEEEEEEECCSCBEEECTTS
T ss_pred EEEEEEECCCCCEEEECCCC
T ss_conf 47999855436289999995
No 5
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=1.00 E-value=1 Score=47.99 Aligned_cols=87 Identities=16% Similarity=0.066 Sum_probs=51.7
Q ss_pred CCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEEECCCC--C------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 878883799982068554399990698048999925679--9------99999089999999998609987889888988
Q 000831 3 SVKEEKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVD--P------TNYDDAPVEGIRRILEEYTGEKIPRTSKIPTD 74 (1264)
Q Consensus 3 ~~~~~~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~--p------~~~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~ 74 (1264)
||++++|.||||+|+|.+-++++|.+|+++...+.+... | +| .+.+.+.+..+++++.++ .++++.
T Consensus 2 ~~~~~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~d-p~~~~~~i~~~i~~~~~~-----~~~~~~ 75 (508)
T 3ifr_A 2 SLAQGRQVIGLDIGTTSTIAILVRLPDTVVAVASRPTTLSSPHPGWAEED-PAQWWDNARAVLAELKTT-----AGESDW 75 (508)
T ss_dssp -----CEEEEEEECSSEEEEEEEETTTEEEEEEEEECCCBCSSTTCCEEC-HHHHHHHHHHHHHHHHHH-----HCGGGC
T ss_pred CCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEEEECCEECCCCCCEEEC-HHHHHHHHHHHHHHHHHH-----CCCCHH
T ss_conf 86658789999706852389999899999999997343006999836888-999999999999999985-----599830
Q ss_pred CEEEEEEEHHHHHHHHHHCCC
Q ss_conf 701899702577567551179
Q 000831 75 KIEWIRMGTTVATNALLERKG 95 (1264)
Q Consensus 75 ~i~~i~hgTT~~tNAller~g 95 (1264)
+|..|-.+++-.+=.++.++|
T Consensus 76 ~I~~Igis~~~~~~v~~D~~G 96 (508)
T 3ifr_A 76 RPGGICVTGMLPAVVLLDDRG 96 (508)
T ss_dssp CEEEEEEEECSSCBEEECTTS
T ss_pred HEEEEEEECCCCCEEEECCCC
T ss_conf 158999977988679999997
No 6
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=1.00 E-value=1 Score=44.73 Aligned_cols=75 Identities=19% Similarity=0.077 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCH--HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 999999999999999976699999887718888782399992924--777999999839987987899984111123344
Q 000831 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1264)
Q Consensus 452 l~~eeaA~~i~~ia~~~m~~~i~~~~~~~G~dpr~f~lv~~GGag--~~ha~~la~~lgi~~VivP~~~~v~sA~G~~~a 529 (1264)
.+..+.+.++++=..-.+...+..+....|..++ .|.+.||+. ++..-.+|+.+|++ |.+|... -.+|+|+++.
T Consensus 372 ~~~~~l~RAvlEgia~~~r~~~~~l~~~~g~~~~--~i~~~GGga~s~~~~Qi~ADv~g~p-V~~~~~~-e~~alGaA~l 447 (506)
T 3h3n_X 372 TTKEDFVRATLQAVAYQSKDVIDTMKKDSGIDIP--LLKVDGGAAKNDLLMQFQADILDID-VQRAANL-ETTALGAAYL 447 (506)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCC--EEEEESGGGGCHHHHHHHHHHHTSE-EEECSSS-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--EEEEECCCCCCHHHHHHHHHHHCCE-EEECCCC-CCHHHHHHHH
T ss_conf 9999999999999999999999999874299977--7999663013899999999872980-7956887-6366999999
Q ss_pred C
Q ss_conf 1
Q 000831 530 D 530 (1264)
Q Consensus 530 d 530 (1264)
-
T Consensus 448 A 448 (506)
T 3h3n_X 448 A 448 (506)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 7
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=1.00 E-value=1 Score=43.43 Aligned_cols=79 Identities=18% Similarity=0.061 Sum_probs=47.8
Q ss_pred CCCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEEECCC--CCCC--C---CCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9987888379998206855439999069804899992567--9999--9---9908999999999860998788988898
Q 000831 1 MGSVKEEKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSV--DPTN--Y---DDAPVEGIRRILEEYTGEKIPRTSKIPT 73 (1264)
Q Consensus 1 ~~~~~~~~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st--~p~~--~---~~~v~~gi~~~l~~~~~~~~~~~~~~~~ 73 (1264)
|.|| |++|.||||+|+|.+-++++|.+|+++...+.+.. .|.+ . ...+.+.+.++++++.++ .++++
T Consensus 20 ~~~M-M~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~-----~~~~~ 93 (520)
T 4e1j_A 20 FQSM-MGGYILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEK-----SGITA 93 (520)
T ss_dssp CCCC-CSCEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHT-----TTCCG
T ss_pred HHHH-HHCEEEEEEECCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-----CCCCC
T ss_conf 9997-54759999967854699999899989999997055146999827888999999999999999996-----59985
Q ss_pred CCEEEEEEEHHH
Q ss_conf 870189970257
Q 000831 74 DKIEWIRMGTTV 85 (1264)
Q Consensus 74 ~~i~~i~hgTT~ 85 (1264)
.+|..|-.+++-
T Consensus 94 ~~I~~Igis~~g 105 (520)
T 4e1j_A 94 NDIAAIGITNQR 105 (520)
T ss_dssp GGEEEEEEEECS
T ss_pred CCEEEEEEECCC
T ss_conf 647799983786
No 8
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=1.00 E-value=1 Score=42.32 Aligned_cols=81 Identities=10% Similarity=0.047 Sum_probs=52.3
Q ss_pred EEEEEECCCCCCCEEEEECCCCEEEEEEECCC--CC------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 79998206855439999069804899992567--99------99999089999999998609987889888988701899
Q 000831 9 LRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSV--DP------TNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIR 80 (1264)
Q Consensus 9 ~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st--~p------~~~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~~i~ 80 (1264)
|.||||+|+|.+.++++|.+|+++...+.++. .| +| ...+.+.+.++++++..+ ...++|..|-
T Consensus 1 ~~lgiDiGtt~~k~~l~d~~g~~l~~~~~~~~~~~p~~g~~e~d-~~~~~~~i~~~i~~~~~~-------~~~~~i~~Ig 72 (484)
T 2itm_A 1 MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQD-PEQWWQATDRAMKALGDQ-------HSLQDVKALG 72 (484)
T ss_dssp CEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEEC-HHHHHHHHHHHHHHHHHH-------SCCTTCCEEE
T ss_pred CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEC-HHHHHHHHHHHHHHHHHH-------CCCCCEEEEE
T ss_conf 98999966700078799799999999995155226999987688-999999999999999974-------8966657999
Q ss_pred EEHHHHHHHHHHCCCCC
Q ss_conf 70257756755117982
Q 000831 81 MGTTVATNALLERKGER 97 (1264)
Q Consensus 81 hgTT~~tNAller~g~k 97 (1264)
.+++-.+..++.++|..
T Consensus 73 is~~~~~~v~~D~~G~~ 89 (484)
T 2itm_A 73 IAGQMHGATLLDAQQRV 89 (484)
T ss_dssp EEECSSCBEEECTTCCB
T ss_pred ECCCCCCEEEECCCCCC
T ss_conf 80776718999999699
No 9
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=1.00 E-value=1 Score=42.18 Aligned_cols=53 Identities=13% Similarity=0.011 Sum_probs=31.3
Q ss_pred CEEEEEECCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 37999820685543999906980489999256799999990899999999986
Q 000831 8 KLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEY 60 (1264)
Q Consensus 8 ~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~~~~~~v~~gi~~~l~~~ 60 (1264)
.|.||||+|||+|.++++|.+|+++...+.+++.+....+.+.+.+.++++++
T Consensus 11 ~~~lGiDiGgT~i~~~l~d~~G~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 63 (305)
T 1zc6_A 11 RYLIGVDGGGTGTRIRLHASDGTPLAMAEGGASALSQGIAKSWQAVLSTLEAA 63 (305)
T ss_dssp CEEEEEEECSSCEEEEEEETTCCEEEEEEESCCCGGGCHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 88999986842068999939998899996799881669999999999999999
No 10
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=1.00 E-value=1 Score=41.99 Aligned_cols=74 Identities=18% Similarity=0.059 Sum_probs=45.4
Q ss_pred CCCEEEEEECCCCCCCEEEEECCCCEEEEEEECCC--CC------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
Q ss_conf 88379998206855439999069804899992567--99------99999089999999998609987889888988701
Q 000831 6 EEKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSV--DP------TNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIE 77 (1264)
Q Consensus 6 ~~~~~iGIDvGGTfTD~v~~~~~g~~~~~~K~~st--~p------~~~~~~v~~gi~~~l~~~~~~~~~~~~~~~~~~i~ 77 (1264)
+++|.||||+|+|.+-++++|.+|+++...+.+.. .| +| .+.+.+.+.++++++.++ .++++.+|.
T Consensus 1 ~~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~d-p~~~~~~~~~~i~~~~~~-----~~~~~~~I~ 74 (510)
T 2p3r_A 1 EKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHD-PMEIWATQSSTLVEVLAK-----ADISSDQIA 74 (510)
T ss_dssp CCCEEEEEEECSSEEEEEEECTTCCEEEEEEEECCCBCSSTTCCEEC-HHHHHHHHHHHHHHHHHH-----TTCCGGGEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCEEEC-HHHHHHHHHHHHHHHHHH-----CCCCHHHEE
T ss_conf 98689999827751278899799989999998324115999838988-999999999999999987-----399830557
Q ss_pred EEEEEHHH
Q ss_conf 89970257
Q 000831 78 WIRMGTTV 85 (1264)
Q Consensus 78 ~i~hgTT~ 85 (1264)
.|-.+++-
T Consensus 75 ~Igis~~~ 82 (510)
T 2p3r_A 75 AIGITNQR 82 (510)
T ss_dssp EEEEEECS
T ss_pred EEEEECCC
T ss_conf 99986786
Done!