RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 000831
(1264 letters)
>gnl|CDD|215358 PLN02666, PLN02666, 5-oxoprolinase.
Length = 1275
Score = 2575 bits (6675), Expect = 0.0
Identities = 1029/1271 (80%), Positives = 1124/1271 (88%), Gaps = 8/1271 (0%)
Query: 1 MGSVKEEKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEY 60
MGS K RFCIDRGGTFTDVYAE+PG + +VLKLLSVDP NYDDAP EGIRRILEE
Sbjct: 2 MGSRGSRKFRFCIDRGGTFTDVYAEVPGGSDFRVLKLLSVDPANYDDAPREGIRRILEEV 61
Query: 61 TGEKIPRTSKIPTDKIEWIRMGTTVATNALLERKGERIALCVTRGFKDLLQIGNQARPQI 120
TG+KIPR++KIPT++IEWIRMGTTVATNALLERKGERIALCVT+GFKDLLQIGNQARP I
Sbjct: 62 TGKKIPRSAKIPTERIEWIRMGTTVATNALLERKGERIALCVTKGFKDLLQIGNQARPNI 121
Query: 121 FDLTVSTPSNLYEEVIEVDERVELVLENEKENQE-SLVKGVSGELVRVVKPVNEKTLEPL 179
FDLTVS PSNLYEEV+EVDERV L LE + ++ S+VKGV+GELV VVKP++E+ L PL
Sbjct: 122 FDLTVSKPSNLYEEVVEVDERVVLALEEDGDDAGGSVVKGVTGELVEVVKPLDEEALRPL 181
Query: 180 LKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGLGFRHVSLSSALTPMVRAVPRGLTA 239
L+GLL+KGI LAVVLMHSYT+P HE AV KLA +GF+ VSLSSAL PMVRAVPRG TA
Sbjct: 182 LQGLLDKGIRSLAVVLMHSYTYPAHERAVGKLARSMGFKQVSLSSALVPMVRAVPRGHTA 241
Query: 240 SVDAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVV 299
SVDAYLTPVIKEYLSGF+S FD+GL VNVLFMQSDGGL PESRFSGHKA+LSGPAGGVV
Sbjct: 242 SVDAYLTPVIKEYLSGFLSGFDDGLGDVNVLFMQSDGGLTPESRFSGHKAILSGPAGGVV 301
Query: 300 GYSQTLFGLETEKPLIGFDMGGTSTDVSRYAGSYEQVLETQIAGAIIQAPQLDINTVAAG 359
GY+QT FGLETEKP+IGFDMGGTSTDVSRY GSYEQVLETQ AG IIQAPQLDINTVAAG
Sbjct: 302 GYAQTTFGLETEKPVIGFDMGGTSTDVSRYDGSYEQVLETQTAGVIIQAPQLDINTVAAG 361
Query: 360 GGSNLMFQLGAFRVGPESVGAHPGPVCYRKGGDLAVTDANLILGFVIPDYFPSIFGPNED 419
GGS L FQ GAFRVGPESVGAHPGPVCYRKGG+LAVTDANL+LG VIPDYFPSIFGPNED
Sbjct: 362 GGSKLKFQFGAFRVGPESVGAHPGPVCYRKGGELAVTDANLVLGRVIPDYFPSIFGPNED 421
Query: 420 QPLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANETMCRPIRQLTEM 479
+PLD+ ATR F+ LA++INSYRKSQDPS KDM+VE++ALGFV VANE MCRPIRQLTEM
Sbjct: 422 EPLDLEATRAAFEALAAQINSYRKSQDPSAKDMSVEEVALGFVRVANEAMCRPIRQLTEM 481
Query: 480 KGHETRNHALACFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGLADVVEEAQEPY 539
KG+ET NHALACFGGAGPQHACAIAR+LGM EV +HR+CGILSAYGMGLADVV EAQEPY
Sbjct: 482 KGYETANHALACFGGAGPQHACAIARALGMSEVFVHRYCGILSAYGMGLADVVAEAQEPY 541
Query: 540 SAVYGPESVLEVSRREGILSKQVKQKLQEQGFREESITTETYLNLRYEGTDTAIMVKKRI 599
+AVYGPES+ E SRRE L+++V+QKLQEQGFRE++ITTETYLNLRYEGTDTAIMV +
Sbjct: 542 AAVYGPESLAEASRREDALAEKVRQKLQEQGFREDNITTETYLNLRYEGTDTAIMVAEPE 601
Query: 600 AEDGSGCGYAVDFEKLFQQEYGFKLQNRNILVCDVRVRGIGVTNILKPQAIEPTSG-TPK 658
DGS YA F KLF++EYGFKLQNR+IL+ DVRVRGIGVTNILKP ++ SG P+
Sbjct: 602 NGDGSDGDYAAAFVKLFRREYGFKLQNRDILIDDVRVRGIGVTNILKPLPLDAASGGLPE 661
Query: 659 VEGHYKVFF-NGWHDAPLYKLENLGYGHVMPGPAIIMNGNSTVIVEPNCKAVITKYGNIK 717
E KV+F NGWHD P+YKLENLG GH +PGPAIIMNGNSTV+VEP CKA++TKYGNIK
Sbjct: 662 PERTTKVYFENGWHDTPVYKLENLGPGHEIPGPAIIMNGNSTVVVEPGCKAIVTKYGNIK 721
Query: 718 IEIE-----SISSTINIAENIADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDF 772
IE+E S T+ AE ADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDF
Sbjct: 722 IEVENSAEQSAEETVKAAEKKADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDF 781
Query: 773 SCALFGPDGGLVANAPHVPVHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHPCAGGSHLPD 832
SCALFGPDGGLVANAPHVPVHLGAMSSTVRWQL+YW NLNEGDVLV+NHP AGGSHLPD
Sbjct: 782 SCALFGPDGGLVANAPHVPVHLGAMSSTVRWQLEYWGENLNEGDVLVTNHPQAGGSHLPD 841
Query: 833 ITVITPVFDNGKLVFFVASRGHHAEIGGITPGSMPPFSKSIWEEGAAIKAFKLVEKGIFQ 892
ITVITPVF +GK+VFFVASRGHHA+IGGITPGSMPPFSK+IWEEGAAIKAFKLVE G+FQ
Sbjct: 842 ITVITPVFRDGKIVFFVASRGHHADIGGITPGSMPPFSKTIWEEGAAIKAFKLVEGGVFQ 901
Query: 893 EEGITKLLLDPSSEDSAHKIPGTRRLQDNLSDLRAQVAANQRGISLIKELIEQYGLKTVQ 952
EEGITKLL P S+++A KIPGTRRLQDNLSDLRAQVAANQRGISLIKELI++YGL TVQ
Sbjct: 902 EEGITKLLQAPGSDETAPKIPGTRRLQDNLSDLRAQVAANQRGISLIKELIDEYGLGTVQ 961
Query: 953 AYMTYVQLNAEEAVREMLKSVAAKVSSESAKDGERNFVTIEEEDYMDDGSVIHLKLTIDS 1012
AYM +VQ NAE AVREMLKSVAA+VSSES G+ + VT+E EDYMDDGS IHL LTID
Sbjct: 962 AYMGHVQANAELAVREMLKSVAARVSSESPTFGDGSSVTLEAEDYMDDGSPIHLTLTIDR 1021
Query: 1013 DKGEAFFDFSGTSSEVLGNWNAPEAVTAAAVIYCLRCLVDVEIPLNQGCLAPVKIHIPPG 1072
KG A FDF GTS EV GNWNAP AVTAAAVIYCLRCLVDV+IPLNQGCLAPV I IPPG
Sbjct: 1022 RKGSAVFDFEGTSPEVYGNWNAPPAVTAAAVIYCLRCLVDVDIPLNQGCLAPVTIRIPPG 1081
Query: 1073 SFLSPSEKAAVVGGNVLTSQRITDVVLTAFQACACSQGCMNNLTFGDSTFGYYETIGGGS 1132
SFLSPS+KAAVVGGNVLTSQR+TDVVLTAFQACACSQGCMNNLTFGD TFGYYETI GG+
Sbjct: 1082 SFLSPSDKAAVVGGNVLTSQRVTDVVLTAFQACACSQGCMNNLTFGDDTFGYYETIAGGA 1141
Query: 1133 GAGPTWDGTSGVQCHMTNTRMTDPEIFEQRYPVFLHKFGLREKSGGAGLHRGGDGLVREI 1192
GAGPTWDGTSGVQCHMTNTR+TDPEI E+RYPV LH+FGLRE SGG GLHRGGDG+VREI
Sbjct: 1142 GAGPTWDGTSGVQCHMTNTRITDPEILERRYPVLLHRFGLREGSGGDGLHRGGDGVVREI 1201
Query: 1193 EFRRPVVVSILSERRVHAPRGLKGGKDGARGANYLITKDKRKVYLGGKNTVQVQPGEILQ 1252
EFRRPV VSILSERRVHAPRGL GG DGARGAN LI KD R+V LGGKNTV V+ GE L+
Sbjct: 1202 EFRRPVTVSILSERRVHAPRGLAGGGDGARGANLLIRKDGRRVNLGGKNTVHVEAGERLR 1261
Query: 1253 ILTPAGGGWGS 1263
ILTP GGG+GS
Sbjct: 1262 ILTPGGGGYGS 1272
>gnl|CDD|223224 COG0146, HyuB, N-methylhydantoinase B/acetone carboxylase, alpha
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 563
Score = 682 bits (1763), Expect = 0.0
Identities = 273/546 (50%), Positives = 353/546 (64%), Gaps = 42/546 (7%)
Query: 734 ADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVPVH 793
D + L +FN+ FM IAE+MG TLQRT+ S NIKERLDFSCA+F +G LVA APH+PVH
Sbjct: 2 MDPITLEVFNNAFMAIAEEMGVTLQRTAFSPNIKERLDFSCAIFDAEGNLVAQAPHIPVH 61
Query: 794 LGAMSSTVRWQLKYWRHN--LNEGDVLVSNHPCAGGSHLPDITVITPVFDNGKLVFFVAS 851
LG+MS +V+ ++ + N L GDV ++N P GG+HLPD+T++TPVF +GKL+ +VA+
Sbjct: 62 LGSMSVSVKAMIRNNKENPDLEPGDVFITNDPYIGGTHLPDVTLVTPVFHDGKLIGYVAN 121
Query: 852 RGHHAEIGGITPGSMPPFSKSIWEEGAAIKAFKLVEKGIFQEEGITKLLLDPSSEDSAHK 911
RGHHA+IGGITPGSM P + I++EG I KLV+ G F+E+ + LL + +
Sbjct: 122 RGHHADIGGITPGSMSPGATEIFQEGLRIPPVKLVKNGEFREDILRILLRN-------VR 174
Query: 912 IPGTRRLQDNLSDLRAQVAANQRGISLIKELIEQYGLKTVQAYMTYVQLNAEEAVREMLK 971
P N+ DL+AQ+AAN +G ++ELI++YGL TV+ M V AE AVR +++
Sbjct: 175 TP-----DYNIGDLKAQIAANLKGRRRVRELIDEYGLDTVEEAMKEVIEYAERAVRAVIR 229
Query: 972 SVAAKVSSESAKDGERNFVTIEEEDYMDDG---SVIHLKLTIDSDKGEAFFDFSGTSSEV 1028
+ DG+ F EDY+DDG I +K+TI + EA DF+GTS +V
Sbjct: 230 KL---------PDGKYEF-----EDYLDDGDTLQPIPVKVTITVEGREAIVDFTGTSPQV 275
Query: 1029 LGNWNAPEAVTAAAVIYCLRCLVDVEIPLNQGCLAPVKIHIPPGSFLSPSEKAAVVGGNV 1088
G +NAP AVT +AV+Y LR L+D +IPLN GCL P++I P G++L+P AAVVGGNV
Sbjct: 276 YGPFNAPLAVTLSAVLYALRSLLDPDIPLNAGCLRPIEIIAPEGTWLNPRYPAAVVGGNV 335
Query: 1089 LTSQRITDVVLTAFQAC------ACSQGCMNNLTFGDST-----FGYYETIGGGSGAGPT 1137
TSQRI DV+ A A SQG MNN+TFG F YYETIGGGSGAGP
Sbjct: 336 ETSQRIADVIFGALAQAAPGRVPAASQGTMNNVTFGGINQKGRGFAYYETIGGGSGAGPG 395
Query: 1138 WDGTSGVQCHMTNTRMTDPEIFEQRYPVFLHKFGLREKSGGAGLHRGGDGLVREIEFRRP 1197
DG GV HMTNTR T EI E+RYPV L F LRE SGGAG +RGGDG+VR P
Sbjct: 396 KDGLDGVHTHMTNTRNTPIEILERRYPVLLEAFSLREGSGGAGKYRGGDGIVRAFRVLEP 455
Query: 1198 VVVSILSERRVHAPRGLKGGKDGARGANYLITKDKRKVYLGGKNTVQVQPGEILQILTPA 1257
++ILSERR P GL GGK G G N + KD LG K+T +++PG+++ I TP
Sbjct: 456 ATLTILSERRRFPPWGLNGGKPGEPGENVVARKDGDVERLGSKDTTELEPGDVVIIETPG 515
Query: 1258 GGGWGS 1263
GGG+G
Sbjct: 516 GGGYGD 521
>gnl|CDD|217092 pfam02538, Hydantoinase_B, Hydantoinase B/oxoprolinase. This family
includes N-methylhydaintoinase B which converts hydantoin
to N-carbamyl-amino acids, and 5-oxoprolinase EC:3.5.2.9
which catalyzes the formation of L-glutamate from
5-oxo-L-proline. These enzymes are part of the
oxoprolinase family and are related to pfam01968.
Length = 527
Score = 631 bits (1629), Expect = 0.0
Identities = 269/535 (50%), Positives = 347/535 (64%), Gaps = 24/535 (4%)
Query: 734 ADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVPVH 793
D + L IF + F IAE+MG L+ T+ S NIKERLDFSCALF +G LVANAPH+PVH
Sbjct: 1 RDPILLEIFKNLFSSIAEEMGTVLRNTAASPNIKERLDFSCALFDANGNLVANAPHIPVH 60
Query: 794 LGAMSSTVRWQLKYWRHNLNEGDVLVSNHPCAGGSHLPDITVITPVFDNGKLVFFVASRG 853
LG+M ++V+ +K W + GDV + N P GG+HLPDITVITP+F +G L+F+VASR
Sbjct: 61 LGSMGTSVKEMVKLWEGGIEPGDVYIVNDPYIGGTHLPDITVITPIFYSGGLIFYVASRA 120
Query: 854 HHAEIGGITPGSMPPFSKSIWEEGAAIKAFKLVEKGIFQEEGITKLLLDPSSEDSAHKIP 913
HHA++GGITPGSMPP SK I++EG I LV+ G F EE I +L +
Sbjct: 121 HHADVGGITPGSMPPNSKEIFQEGYIIPPELLVKNGEFNEELIRQLFVR--------NPY 172
Query: 914 GTRRLQDNLSDLRAQVAANQRGISLIKELIEQYGLKTVQAYMTYVQLNAEEAVREMLKSV 973
+R + N+ DL+AQ+AANQ+GI I +LI++YGL+TV YM ++Q NAEEA++ + +
Sbjct: 173 PSRNPECNIGDLKAQIAANQKGIDRIGKLIDEYGLETVLGYMAHIQDNAEEAIKRKIAKL 232
Query: 974 AAKVSSESAKDGERNFVTIEEEDYMDDGSVIHLKLTIDSDKGEAFFDFSGTSSEVLGNWN 1033
A D D +D G +I +++TI+ KG A FDF GTS + N+N
Sbjct: 233 ---DEPYGAYD-------YGVCDRLDTGKLIKVEITINIKKGTAIFDFDGTSRQGDHNFN 282
Query: 1034 APEAVTAAAVIYCLRCLVDVEIPLNQGCLAPVKIHIPPGSFLSPSEKAAVVGGNVLTSQR 1093
AP+AVT +AV+Y LR LV +IPLN GCL P++I IP GS L+P AAVV GNV TSQR
Sbjct: 283 APQAVTNSAVLYALRTLVGPDIPLNDGCLRPLQIIIPKGSLLNPRRPAAVVAGNVETSQR 342
Query: 1094 ITDVVLTAFQACACSQGCMNNLTFGD------STFGYYETIGGGSGAGPTWDGTSGVQCH 1147
I DV+ A A SQG MNN+TFG F YYETIGGGSGAG +G V H
Sbjct: 343 IVDVIYKALYVPAASQGTMNNVTFGGGGNQDGEAFQYYETIGGGSGAGDGLNGADAVHTH 402
Query: 1148 MTNTRMTDPEIFEQRYPVFLHKFGLREKSGGAGLHRGGDGLVREIEFRRPVVVSILSERR 1207
MTNTRMTD E+ E RYPV L +F +R SGGAG +RGG+G+VR ++F V VSILS RR
Sbjct: 403 MTNTRMTDIEVLEMRYPVLLLEFSIRAGSGGAGKYRGGNGIVRMVKFLHDVTVSILSNRR 462
Query: 1208 VHAPRGLKGGKDGARGANYLITKDKRKVYLGGKNTVQVQPGEILQILTPAGGGWG 1262
+P G+ GG GA G N+L ++ L GK ++ + PG+ L I TP GGG+G
Sbjct: 463 RISPWGMAGGYPGASGENWLAHNTGLEIRLKGKASLYLGPGDRLIIETPGGGGYG 517
>gnl|CDD|223223 COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 674
Score = 528 bits (1363), Expect = e-173
Identities = 244/726 (33%), Positives = 353/726 (48%), Gaps = 67/726 (9%)
Query: 8 KLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPR 67
LR ID GGTFTD +K+L+ P GIR LE
Sbjct: 2 MLRIGIDVGGTFTDAVLLDEDGGVLATIKVLTT-PDLPSGIVNAGIRLALE--------- 51
Query: 68 TSKIPTDKIEWIRMGTTVATNALLERKGERIALCVTRGFKDLLQIGNQARPQIFDLTVST 127
+ +++ + GTT+ATNALLERKG R AL T+GF DL++IG Q RP+++ L +
Sbjct: 52 --LLEGSEVDLVVHGTTLATNALLERKGLRTALITTKGFVDLIEIGRQNRPRLYPLYIKK 109
Query: 128 PSNLY--EEVIEVDERVELVLENEKENQESLVKGVSGELVRVVKPVNEKTLEPLLKGLLE 185
P L V ERV G V+KP++E+ + L
Sbjct: 110 PKPLVPRVRVFGGHERV-------------------GAEGEVIKPLDEEEVREAAAALKA 150
Query: 186 KGISCLAVVLMHSYTFPQHEMAVEKLALGLGFRH-VSLSSALTPMVRAVPRGLTASVDAY 244
G+ +AV + SY P+HE+ V ++ +G VSLS ++P + R TA ++AY
Sbjct: 151 AGVEAIAVSSLFSYRNPEHELRVAEIIREIGPDIPVSLSHEVSPEIGEYERANTAVLNAY 210
Query: 245 LTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFSGHKA--VLSGPAGGVVGYS 302
L+P+++ YL E K ++ MQSDGGL +LSGPA GVVG +
Sbjct: 211 LSPILRRYLEAVKDALKERGIKARLMVMQSDGGLVSAEEAREKPVETILSGPAAGVVGAA 270
Query: 303 QTLFGLETEKPLIGFDMGGTSTDVSRYA-GSYEQVLETQIAGAI-IQAPQLDINTVAAGG 360
L GL+ I FDMGGTSTDV+ G E ET++AG + P +DI TVAAGG
Sbjct: 271 Y-LTGLKAGN-AIVFDMGGTSTDVALIIDGEPEISSETEVAGGYPTRVPMVDIRTVAAGG 328
Query: 361 GSNLMFQ-LGAFRVGPESVGAHPGPVCYRKGG-DLAVTDANLILGFVIPDYFPSIFGPNE 418
GS + G RVGP S GA PGP CY +GG + +TDANL+LG + P P + G
Sbjct: 329 GSIVWVDEGGPLRVGPLSAGADPGPACYGRGGTEPTITDANLVLGRLQP---PVLLGG-- 383
Query: 419 DQPLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANETMCRPIRQLTE 478
D LD+ RE F +L ++I + E++A GF+ +AN M IR++T
Sbjct: 384 DLKLDVELAREAFSELEADIG-----------GLIGEEVASGFIRLANLEMAGAIRKVTV 432
Query: 479 MKGHETRNHALACFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGLADVVEEAQEP 538
+G++ R+ L FGGAGP HA +A LG++ V+I + G+ SAYGM LAD+ E +
Sbjct: 433 ERGYDPRDFTLIGFGGAGPLHALGVAEELGIKRVIIPPYPGVFSAYGMLLADLRSELSKS 492
Query: 539 YSAVYGPESVLEVSRREGILSKQVKQKLQEQGFREESITTETYLNLRYEG--TDTAIMVK 596
++ ++ +L ++ ++L GF EE I +RY G D + V
Sbjct: 493 VKQKLAEAALELIAFVFEMLEEEAIEELLASGFSEEDIRVVRVAPVRYVGGGQDAELEVL 552
Query: 597 KRIAEDGSGCGYAVDFEKLFQQEYGFKLQNRNILVCDVRVRGIGVTNILKPQAIEPTSGT 656
K +E+ +FE+ + YG + R V +RV IG + +E
Sbjct: 553 KSDSEEI-----RAEFEEPHEARYGNAVGARPGEVVAIRVEAIGPRDKPVLSPLEEIERV 607
Query: 657 PKVEGHYK--VFFNGWHDAPLYKLENLGYGHVMPGPAIIMNGNSTVIVEPNCKAVITKYG 714
Y+ F W + P+Y+ E L G + GPAII +ST++V P A + G
Sbjct: 608 FAPFLGYREAYFAGLWAETPVYEREKLAGGDEVEGPAIIEEEDSTIVVPPGWAARVDVKG 667
Query: 715 NIKIEI 720
+ +E
Sbjct: 668 VLVLER 673
>gnl|CDD|216816 pfam01968, Hydantoinase_A, Hydantoinase/oxoprolinase. This family
includes the enzymes hydantoinase and oxoprolinase
EC:3.5.2.9. Both reactions involve the hydrolysis of
5-membered rings via hydrolysis of their internal imide
bonds.
Length = 285
Score = 312 bits (802), Expect = 1e-97
Identities = 126/307 (41%), Positives = 167/307 (54%), Gaps = 28/307 (9%)
Query: 235 RGLTASVDAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFSGH--KAVLS 292
R +TA ++AYL P+++ YL G E K + MQSDGGL + +LS
Sbjct: 1 REVTAVLNAYLAPIMRRYLEGVEDALKERGIKAPLYVMQSDGGLMSIEEARRKPVETILS 60
Query: 293 GPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA-GSYEQVLETQI-AGAIIQAPQ 350
GPA GVVG + TL GL K I DMGGTSTDVS G E E ++ G + P
Sbjct: 61 GPAAGVVGAAYTLAGL---KNAIVVDMGGTSTDVSLIIDGEPEISSEGEVVGGYPTRVPM 117
Query: 351 LDINTVAAGGGSNL-MFQLGAFRVGPESVGAHPGPVCYRKGGD-LAVTDANLILGFVIPD 408
LDI TV AGGGS + + G RVGPES GA PGP CY KGG+ L VTDANL+LG + P+
Sbjct: 118 LDIRTVGAGGGSIVVVDDGGKLRVGPESAGADPGPACYGKGGEPLTVTDANLVLGRLNPE 177
Query: 409 YFPSIFGPNEDQPLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANET 468
F FGP + + ++ V ++VE++A G + +ANET
Sbjct: 178 DFLGGFGPLAGEAAE-------------------EADLAEVLGLSVEEVAEGILRIANET 218
Query: 469 MCRPIRQLTEMKGHETRNHALACFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGL 528
M +R L+ +G + R+ L FGGAGP HA +A LG++EV+ + G+ +A G L
Sbjct: 219 MADAVRLLSVERGLDPRDFPLVVFGGAGPLHAPELAEELGIKEVIPPPYPGVANAVGAAL 278
Query: 529 ADVVEEA 535
ADV E
Sbjct: 279 ADVRAEV 285
>gnl|CDD|218571 pfam05378, Hydant_A_N, Hydantoinase/oxoprolinase N-terminal region.
This family is found at the N-terminus of the pfam01968
family.
Length = 175
Score = 202 bits (515), Expect = 9e-60
Identities = 86/207 (41%), Positives = 114/207 (55%), Gaps = 32/207 (15%)
Query: 10 RFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTS 69
R ID GGTFTD A G LK+L+ D P+EGIR LEE GE P
Sbjct: 1 RIGIDVGGTFTDAVALDEGDGVVATLKVLTTP-----DDPLEGIRNALEELLGELGP--- 52
Query: 70 KIPTDKIEWIRMGTTVATNALLERKGERIALCVTRGFKDLLQIGNQARPQIFDLTVSTPS 129
+++ +R GTTVATNALLERKG +AL T+GF+D+L+IG Q RP +FDL P
Sbjct: 53 ---LGEVDLVRHGTTVATNALLERKGAPVALITTKGFRDVLEIGRQNRPDLFDL--YKPL 107
Query: 130 NLYEEVIEVDERVELVLENEKENQESLVKGVSGELVRVVKPVNEKTLEPLLKGLLEKGIS 189
E VIEVDERV+ G V+KP++E+ + LK L + G+
Sbjct: 108 VPRELVIEVDERVD-------------ADG------EVIKPLDEEAVREALKELKDAGVE 148
Query: 190 CLAVVLMHSYTFPQHEMAVEKLALGLG 216
+AV L+HSY P+HE+ V+++ G
Sbjct: 149 AVAVSLLHSYRNPEHELRVKEIIREEG 175
>gnl|CDD|227950 COG5663, COG5663, Uncharacterized conserved protein [Function
unknown].
Length = 194
Score = 32.1 bits (73), Expect = 1.2
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 7 EKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSV-DPTNYDDAPVEGIRRILEEY 60
+LR CID GT TD P L K LS DPT+YD + I EE+
Sbjct: 5 FQLRCCIDIDGTITDDPTFAP-YLNPAFEKSLSEADPTDYDLHKILNI--TTEEF 56
>gnl|CDD|224260 COG1341, COG1341, Predicted GTPase or GTP-binding protein [General
function prediction only].
Length = 398
Score = 32.4 bits (74), Expect = 1.6
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 134 EVIEVDERVELVLENEKENQESLVKGVSGELVRVVKPVNEKTLEPLLKGLLEKGISCLAV 193
+ I E+ K + E + VSG VRVV K LL GL++ C+ +
Sbjct: 292 KGILHAEKCGGRPYVVKSDLEEGPRLVSGNDVRVVPSEELK---GLLVGLIDNDGFCIGL 348
Query: 194 VLMHSYTFPQHEMAVE 209
++ F ++E+ +
Sbjct: 349 GVLRRIDFKENELTIY 364
>gnl|CDD|227728 COG5441, COG5441, Uncharacterized conserved protein [Function
unknown].
Length = 401
Score = 32.1 bits (73), Expect = 2.2
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 268 NVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTST 324
+++ M S +A +R S + VLS A + G ++ EKP IG M G +T
Sbjct: 139 DIIMMYSVTDMAGLNRIS--RVVLSNAAHAIAGMAKRPAEPSAEKPAIGLTMFGVTT 193
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional.
Length = 487
Score = 31.6 bits (72), Expect = 2.6
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 215 LGFRHVSLSSALTPMVRAVPRGLTASVDAYLTPVIKEYLSG 255
LG S+L ++R P+ L ASV L PV+K YL G
Sbjct: 134 LGVT----RSSLPELLRRYPQVLHASVVVDLAPVVK-YLQG 169
>gnl|CDD|149709 pfam08734, GYD, GYD domain. This protein is found in a range of
bacteria. It is usually less than 100 amino acids in
length. The function of the protein is unknown. It may
belong to the dimeric alpha/beta barrel superfamily.
Length = 91
Score = 29.1 bits (66), Expect = 3.3
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 964 EAVREMLKSVAAKVSSESAKDGERNFVTIEEEDYMDDGSVIHLKLTIDS 1012
EAVRE+L+S+ KV S G + V I E DD S L L I +
Sbjct: 23 EAVRELLESLGGKVKSFYWTFGPYDLVAIVEAP--DDASAAALGLAIAA 69
>gnl|CDD|226724 COG4274, COG4274, Uncharacterized conserved protein [Function
unknown].
Length = 104
Score = 29.3 bits (66), Expect = 3.9
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 964 EAVREMLKSVAAKVSSESAKDGERNFVTIEEEDYMDDGSVIHLKLTIDS 1012
AVR +L+S+ KV + GE + V I E DD L + S
Sbjct: 33 AAVRALLESMGGKVKEQYWTLGEYDVVAIVEAP--DDAVATRFSLALAS 79
>gnl|CDD|227316 COG4983, COG4983, Uncharacterized conserved protein [Function
unknown].
Length = 495
Score = 30.3 bits (68), Expect = 6.9
Identities = 22/108 (20%), Positives = 32/108 (29%)
Query: 14 DRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPT 73
D GG F D +G+ + P + P + + R +
Sbjct: 384 DGGGEFLDDSGNGWTVEDGRKNPYAHLSPLSNQLIPNTALAELPTHRVAYLPKREIWLWC 443
Query: 74 DKIEWIRMGTTVATNALLERKGERIALCVTRGFKDLLQIGNQARPQIF 121
D W GT L E G + + R D LQ + Q F
Sbjct: 444 DDGVWKPNGTGWVRQWLSEYLGPYYSGHIRREVMDQLQNRSLVEEQRF 491
>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era. Era is an essential
GTPase in Escherichia coli and many other bacteria. It
plays a role in ribosome biogenesis. Few bacteria lack
this protein [Protein synthesis, Other].
Length = 270
Score = 30.0 bits (68), Expect = 7.0
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 41 DPTNYDDAP-----VEGIRRILEEYTGEKIPRTSKIPTDKIEWIRMGTT-VATNALLERK 94
D P E IR + YT E+IP + ++ ++ + G + +ER+
Sbjct: 171 PEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALISVERE 230
Query: 95 GERIALCVTRGFKDLLQIGNQARPQI 120
++ + + + + IG AR I
Sbjct: 231 SQK-KIIIGKNGSMIKAIGIAARKDI 255
>gnl|CDD|225269 COG2405, COG2405, Predicted nucleic acid-binding protein, contains
PIN domain [General function prediction only].
Length = 157
Score = 29.3 bits (66), Expect = 7.7
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 494 GAGPQHACAIARSLGMREVLIHRFCGILSAYGMGLADVVEEAQEPYSAVYGPESVLEVSR 553
G A A+A L +L+ A +GL V G VL +++
Sbjct: 73 DKGEAEAIALALELKADLLLMDDRDARNVAKSLGL------------KVTGTLGVLALAK 120
Query: 554 REGILS--KQVKQKLQEQGFR 572
+G++S K + +L E+GFR
Sbjct: 121 SKGLISKDKPILDELIEKGFR 141
>gnl|CDD|237798 PRK14714, PRK14714, DNA polymerase II large subunit; Provisional.
Length = 1337
Score = 30.4 bits (69), Expect = 8.1
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 133 EEVIEVDERVELVLEN--EKENQESLVKGVSGELVRVVKPVNEKTLEPLLKGLL 184
I V E LEN E+EN L+KGV G R EK EPL KG+L
Sbjct: 724 RRTINVKEEYRSALENVGERENAFDLLKGVKGLTSR------EKIPEPLEKGIL 771
>gnl|CDD|226133 COG3605, PtsP, Signal transduction protein containing GAF and PtsI
domains [Signal transduction mechanisms].
Length = 756
Score = 30.5 bits (69), Expect = 8.4
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 13/68 (19%)
Query: 205 EMAVEKLA----LGLGFRHVSLSSALTPMVRAVPRGLT---------ASVDAYLTPVIKE 251
EMA + L+ +GLGFR +S++ V+ + R L ++ A I+
Sbjct: 678 EMAGDPLSAMALIGLGFRSLSMNPRSVGPVKYLLRHLDLAEARALAERALTAQSGTSIRH 737
Query: 252 YLSGFMSK 259
L+ F +
Sbjct: 738 LLAAFAER 745
>gnl|CDD|213242 cd03275, ABC_SMC1_euk, ATP-binding cassette domain of eukaryotic
SMC1 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 247
Score = 29.5 bits (67), Expect = 9.4
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 572 REESITTETYLNLRYEGTDTAIMVKKRIAEDGSGCGYAVDFEKLFQQEYGFKLQNRNILV 631
+ + Y+ YE D +RI GS Y ++ + + +EY +L+ NILV
Sbjct: 67 VGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS-SYRINGKVVSLKEYNEELEKINILV 125
>gnl|CDD|223197 COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases
[Amino acid transport and metabolism].
Length = 409
Score = 29.9 bits (68), Expect = 9.9
Identities = 28/114 (24%), Positives = 40/114 (35%), Gaps = 17/114 (14%)
Query: 529 ADVVEEAQEPYSAVYGPESVLEVSRREGIL-----SKQVKQKLQEQGFREESITTETYLN 583
D V + E Y PE V RR I K VK KL+E G E L+
Sbjct: 295 QDGVLKNPETYEP-IDPEDVG-RRRRIVIGGKHSGRKAVKAKLEELGIE----LDEEELD 348
Query: 584 LRYEGTDTAIMVKKRIAEDGSGCGYAVDFEKLFQQEYGFKLQNRNILVCDVRVR 637
+ VK+ + D E L ++E G + I + + V+
Sbjct: 349 KLFS------RVKELADKGKKKEVTDADLEALVEEELGSREPFEKISLDVLTVQ 396
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.399
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 65,202,746
Number of extensions: 6652394
Number of successful extensions: 6368
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6326
Number of HSP's successfully gapped: 27
Length of query: 1264
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1156
Effective length of database: 6,147,370
Effective search space: 7106359720
Effective search space used: 7106359720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (28.7 bits)