BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000832
         (1263 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2W45|A Chain A, Epstein-Barr Virus Alkaline Nuclease
 pdb|2W45|B Chain B, Epstein-Barr Virus Alkaline Nuclease
          Length = 470

 Score = 32.7 bits (73), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 28/141 (19%)

Query: 659 VSP-DNVVGL-LEQCMGLISKCKG-LSEDEERQAEVRSAHKLLLSSCAFDDMLEALTMLL 715
           +SP D + G+ L+ C+ + S+    L  D     E++   K L S   FD +  + T L 
Sbjct: 191 ISPTDGIFGVSLDLCVNVESQGDFILFTDRSCIYEIKCRFKYLFSKSEFDPIYPSYTALY 250

Query: 716 QKAVYRCHVKFGTEIPKHNVSSVKRKKPKSAVKISGKWKYASGKKASSFEEDYSIAVGIA 775
           ++   R  ++F   I +  V  V                   G+  S  E DY +    A
Sbjct: 251 KRPCKRSFIRFINSIARPTVEYV-----------------PDGRLPS--EGDYLLTQDEA 291

Query: 776 WQVKDLLTSEDSRKAMLGSQH 796
           W +KD+      RK  LG  H
Sbjct: 292 WNLKDV------RKRKLGPGH 306


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,905,808
Number of Sequences: 62578
Number of extensions: 1121153
Number of successful extensions: 2311
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2311
Number of HSP's gapped (non-prelim): 1
length of query: 1263
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1153
effective length of database: 8,089,757
effective search space: 9327489821
effective search space used: 9327489821
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)