BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000832
(1263 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2TAW0|CNDG2_XENLA Condensin-2 complex subunit G2 OS=Xenopus laevis GN=ncapg2 PE=1
SV=1
Length = 1156
Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/432 (34%), Positives = 238/432 (55%), Gaps = 3/432 (0%)
Query: 149 LFESDSVLSFEIASLCESWWKNDLGGKEMLISQFLPFLVSRSLTLKKKV-DVHRVYSFRD 207
L +S+S ++ I LCE+WW+ L GKE L+++SL +K V D+ R++
Sbjct: 133 LPKSESHITLAIRHLCEAWWEKGLQGKEEFGKTAFLLLLAKSLEVKCVVADIGRLWHLHQ 192
Query: 208 AFALFDFDDNSIEDLKLLLIRCVISPLYLKTEDGRKFLAFLFGLSKPMLKDVLAMIKSQI 267
FDF+ ++K LL++C +S ++K E+GR+FL+FLF +K + IK+Q+
Sbjct: 193 TLLSFDFNSEESHNVKDLLLQCFLSINHIKKEEGRRFLSFLFSWDVNFIKMIHGTIKNQL 252
Query: 268 SFERKSMLEAYGDVLYRAWKGVEEGFREDVESGFLQVLIEGAIH-ASSRAFAASIRRVLG 326
KS++ D+ +RAWK + +E +Q + +H + +R VL
Sbjct: 253 QCLPKSLMTHIADIYFRAWKKASGDVLQTIEQSCIQDFMHHGVHLPRNSPLHPKVREVLS 312
Query: 327 GFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDT 386
F Q+ GVE+ML+NL +P+++R L+A NS VR NA L ++ FP+ DP+ E D
Sbjct: 313 YFHQQKLRQGVEEMLYNLYQPIIWRGLKARNSEVRSNAALLFVEAFPIRDPNLNHEDMDN 372
Query: 387 LFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLC 446
KQF L LL D P VR V G C+I +WE+IP A +T ++ KI D + D+
Sbjct: 373 EIQKQFEELFNLLEDPQPLVRSTGVLGVCKITAKYWEMIPPAILTDLLRKILGDLAADVS 432
Query: 447 N-EVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTF 505
+ +VR + + LL N LSH +L+ +LP L + DN VR+A D+LL ++ +R
Sbjct: 433 SADVRCSVFKCLPILLDNKLSHPLLENMLPALKFCLHDNSEKVRVAFVDMLLKIKAVRAA 492
Query: 506 QFNKVVGLDILLSALANDQSQVAQKITRLLMPSYFPLKVNIKEACSRCVTIVKRSPVAGA 565
+F K+ ++ +L+ L D V+++I LL S+FP+ + C RCV +++ +P A
Sbjct: 493 KFWKICPMEQILARLEVDSRPVSRRIVNLLFNSFFPVNQQEEVWCERCVALIQMNPAAAR 552
Query: 566 RFCEFAVSEGAP 577
+F ++A AP
Sbjct: 553 KFYQYAYEHTAP 564
>sp|Q6DFV1|CNDG2_MOUSE Condensin-2 complex subunit G2 OS=Mus musculus GN=Ncapg2 PE=2 SV=2
Length = 1138
Score = 248 bits (633), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/425 (32%), Positives = 229/425 (53%), Gaps = 2/425 (0%)
Query: 149 LFESDSVLSFEIASLCESWWKNDLGGKEMLISQFLPFLVSRSLTLKKKVDVHRVYSFRDA 208
L ES+ L I LC WW+ L KE + L+ RSL K DV R++ A
Sbjct: 133 LPESEQKLQNSIQDLCVKWWERGLPAKEDMGKTAFIMLLRRSLETKSGADVCRLWRIHQA 192
Query: 209 FALFDFDDNSIEDLKLLLIRCVISPLYLKTEDGRKFLAFLFGLSKPMLKDVLAMIKSQIS 268
FD+D ++K +L+ C I+ Y+K E+GR+FL+FLF + +K + IK+Q++
Sbjct: 193 LYCFDYDWEESREIKDMLLECFINVNYIKKEEGRRFLSFLFSWNVDFIKMIHETIKNQLA 252
Query: 269 FERKSMLEAYGDVLYRAWKGVEEGFREDVESGFLQVLIEGAIHASSRAFAAS-IRRVLGG 327
+KS++ ++ +RAWK E +E +Q + IH R+ S +R VL
Sbjct: 253 GLQKSLMVHIAEIYFRAWKKASGKMLETIEYDCIQDFMFHGIHLLRRSPVHSKVREVLSY 312
Query: 328 FVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTL 387
F Q+ GVE+ML+ L +P+++R L+A NS VR NA L ++ FP+ DP+ T D
Sbjct: 313 FHQQKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPNFTATEMDNE 372
Query: 388 FDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCN 447
KQF L L+ D P VR + G C+I +WE++P + + K+ + + D+ +
Sbjct: 373 IQKQFEELYNLIEDPYPRVRSTGILGVCKISSKYWEMMPPNILVDFLKKVTGELAFDISS 432
Query: 448 -EVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQ 506
+VR + + +L N LSH +L+ LLP L + + DN VR+A DLLL ++ +R +
Sbjct: 433 ADVRCSVFKCLPIILDNKLSHPLLEQLLPTLRYSLHDNSEKVRVAFVDLLLKIKAVRAAK 492
Query: 507 FNKVVGLDILLSALANDQSQVAQKITRLLMPSYFPLKVNIKEACSRCVTIVKRSPVAGAR 566
F K+ ++ +L L D V++++ L+ S+ P+ + C RCVT+++ + A R
Sbjct: 493 FWKICPMEDILVRLEMDSRPVSRRLVSLIFNSFLPVNQPEEVWCERCVTLIQMNRAAARR 552
Query: 567 FCEFA 571
F ++A
Sbjct: 553 FYQYA 557
>sp|Q86XI2|CNDG2_HUMAN Condensin-2 complex subunit G2 OS=Homo sapiens GN=NCAPG2 PE=1 SV=1
Length = 1143
Score = 240 bits (613), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 153/487 (31%), Positives = 251/487 (51%), Gaps = 15/487 (3%)
Query: 96 NANENYAAERKQKVLEDLQIFSHVAYLCTAHPRKVFSSSD---LLPAVQLLHNNLI-LFE 151
+N E K+ + ++I + + A + S + LL V +L+ L L E
Sbjct: 76 QGEDNMETEHGSKMRKSIEIIYAITSVILASVSVINESENYEALLECVIILNGILYALPE 135
Query: 152 SDSVLSFEIASLCESWWKNDLGGKEMLISQFLPFLVSRSLTLKKKVDVHRVYSFRDAFAL 211
S+ L I LC +WW+ L KE L+ RSL K DV R++ A
Sbjct: 136 SERKLQSSIQDLCVTWWEKGLPAKEDTGKTAFVMLLRRSLETKTGADVCRLWRIHQALYC 195
Query: 212 FDFDDNSIEDLKLLLIRCVISPLYLKTEDGRKFLAFLFGLSKPMLKDVLAMIKSQISFER 271
FD+D ++K +L+ C I+ Y+K E+GR+FL+ LF + +K + IK+Q+ +
Sbjct: 196 FDYDLEESGEIKDMLLECFININYIKKEEGRRFLSCLFNWNINFIKMIHGTIKNQLQGLQ 255
Query: 272 KSMLEAYGDVLYRAWKGVEEGFREDVESGFLQVLIEGAIHASSRAFAAS-IRRVLGGFVN 330
KS++ ++ +RAWK E +E+ +Q + IH R+ S +R VL F +
Sbjct: 256 KSLMVYIAEIYFRAWKKASGKILEAIENDCIQDFMFHGIHLPRRSPVHSKVREVLSYFHH 315
Query: 331 QRTT-PGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFD 389
Q+ GVE+ML+ L +P+++R L+A NS VR NA L ++ FP+ DP+ D+
Sbjct: 316 QKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPNLHAIEMDSEIQ 375
Query: 390 KQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKI-----FDDNSHD 444
KQF L LL D P VR + G C+I +WE++P + ++ K+ FD +S D
Sbjct: 376 KQFEELYSLLEDPYPMVRSTGILGVCKITSKYWEMMPPTILIDLLKKVTGELAFDTSSAD 435
Query: 445 LCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRT 504
VR + + +L N LSH +L+ LLP L + + DN VR+A D+LL ++ +R
Sbjct: 436 ----VRCSVFKCLPMILDNKLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRA 491
Query: 505 FQFNKVVGLDILLSALANDQSQVAQKITRLLMPSYFPLKVNIKEACSRCVTIVKRSPVAG 564
+F K+ ++ +L L D V++++ L+ S+ P+ + C RCVT+V+ + A
Sbjct: 492 AKFWKICPMEHILVRLETDSRPVSRRLVSLIFNSFLPVNQPEEVWCERCVTLVQMNHAAA 551
Query: 565 ARFCEFA 571
RF ++A
Sbjct: 552 RRFYQYA 558
>sp|Q46HA8|PUR9_PROMT Bifunctional purine biosynthesis protein PurH OS=Prochlorococcus
marinus (strain NATL2A) GN=purH PE=3 SV=1
Length = 518
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 24/173 (13%)
Query: 84 YSRTAKSSSSIDNANENYAAERKQKVLEDLQIFSHVAYLCTAH--------PRKVFSSSD 135
+ TA +I N N ++ +K L+ L + + Y H P K +S ++
Sbjct: 176 FEHTATYDLTISNWIANQSSSKKVSWLQSLPLKQELRYGENPHQKASWYGEPEKGWSGAN 235
Query: 136 LLPAVQLLHNNLILFESDSVLSFEIASLCESWWKNDLGGKE-----MLISQFLPFLV--- 187
L +L NNL+ E+ +++L E +KN++ ++I P V
Sbjct: 236 QLQGKELSTNNLLDLEA------ALSTLREFGYKNNISNPSYQKAAVVIKHTNPCGVAIG 289
Query: 188 -SRSLTLKKKVDVHRVYSFRDAFALF-DFDDNSIEDLKLLLIRCVISPLYLKT 238
S S LK+ +D RV +F A+ D+ + ++++ + I CV++P + +T
Sbjct: 290 DSPSSALKRALDGDRVSAFGGIIAINCPVDEAAAKEIENIFIECVVAPYFDET 342
>sp|A2C098|PUR9_PROM1 Bifunctional purine biosynthesis protein PurH OS=Prochlorococcus
marinus (strain NATL1A) GN=purH PE=3 SV=1
Length = 518
Score = 38.1 bits (87), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 24/173 (13%)
Query: 84 YSRTAKSSSSIDNANENYAAERKQKVLEDLQIFSHVAYLCTAH--------PRKVFSSSD 135
+ TA +I N N ++ +K L+ L + + Y H P K +S ++
Sbjct: 176 FEHTATYDLTISNWIANQSSSKKVSWLQSLPLKQELRYGENPHQKASWYGEPEKGWSGAN 235
Query: 136 LLPAVQLLHNNLILFESDSVLSFEIASLCESWWKNDLGGKE-----MLISQFLPFLV--- 187
L +L NNL+ E+ +++L E +KN + ++I P V
Sbjct: 236 QLQGKELSTNNLLDLEA------ALSTLREFGYKNTISNPSYQKAAVVIKHTNPCGVAIG 289
Query: 188 -SRSLTLKKKVDVHRVYSFRDAFALF-DFDDNSIEDLKLLLIRCVISPLYLKT 238
S S LK+ +D RV +F A+ D+ + ++++ + I CV++P + +T
Sbjct: 290 DSPSSALKRALDGDRVSAFGGIIAINCPVDEAAAKEIENIFIECVVAPYFDET 342
>sp|A8FKR4|RPOC_CAMJ8 DNA-directed RNA polymerase subunit beta' OS=Campylobacter jejuni
subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)
GN=rpoC PE=3 SV=1
Length = 1517
Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 12/178 (6%)
Query: 144 HNNLILFESDSVLSFEIASLCESWWKND------LGGKEMLISQFLPFLVSRSLTLKKKV 197
+NN I+ E D V+SFE E+ + D G + ++I+++LP V +L + K
Sbjct: 1180 YNNTIIAEIDGVVSFED---IEAGYSADEQIDEATGKRSLVINEYLPSGVRPTLVIAGKG 1236
Query: 198 DVHRVYSFRDAFALFDFDDNSIEDLKLLLIRCVISPLYLKTEDGRKFLAFLFGLSKPMLK 257
D Y +F D + I +L + G ++ LF KP
Sbjct: 1237 DKAVRYQLEPKTVIFVHDGDKIAQADILAKTPKAAAKSKDITGGLPRVSELFEARKPKNA 1296
Query: 258 DVLAMIKSQISFERKSMLEAYGDVLYRAWKGVEEGFREDVESGFLQVLIEGAIHASSR 315
V+A I + F++ L + ++ +A G + D +S +QV IHA +
Sbjct: 1297 AVIAEIDGVVRFDKP--LRSKERIIIQAEDGTSAEYLID-KSKHIQVRDGEFIHAGEK 1351
>sp|A1VYJ5|RPOC_CAMJJ DNA-directed RNA polymerase subunit beta' OS=Campylobacter jejuni
subsp. jejuni serotype O:23/36 (strain 81-176) GN=rpoC
PE=3 SV=1
Length = 1517
Score = 37.4 bits (85), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 12/178 (6%)
Query: 144 HNNLILFESDSVLSFEIASLCESWWKND------LGGKEMLISQFLPFLVSRSLTLKKKV 197
+NN I+ E D V+SFE E+ + D G + ++I+++LP V +L + K
Sbjct: 1180 YNNTIIAEIDGVVSFED---IEAGYSADEQIDEATGKRSLVINEYLPSGVRPTLVIAGKG 1236
Query: 198 DVHRVYSFRDAFALFDFDDNSIEDLKLLLIRCVISPLYLKTEDGRKFLAFLFGLSKPMLK 257
D Y +F D + I +L + G ++ LF KP
Sbjct: 1237 DKAVRYQLEPKTVIFVHDGDKIAQADILAKTPKAAAKSKDITGGLPRVSELFEARKPKNA 1296
Query: 258 DVLAMIKSQISFERKSMLEAYGDVLYRAWKGVEEGFREDVESGFLQVLIEGAIHASSR 315
V+A I + F++ L + ++ +A G + D +S +QV IHA +
Sbjct: 1297 AVIAEIDGVVRFDKP--LRSKERIIIQAEDGTSAEYLID-KSKHIQVRDGEFIHAGEK 1351
>sp|Q9PI30|RPOC_CAMJE DNA-directed RNA polymerase subunit beta' OS=Campylobacter jejuni
subsp. jejuni serotype O:2 (strain NCTC 11168) GN=rpoC
PE=3 SV=1
Length = 1517
Score = 37.4 bits (85), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 12/178 (6%)
Query: 144 HNNLILFESDSVLSFEIASLCESWWKND------LGGKEMLISQFLPFLVSRSLTLKKKV 197
+NN I+ E D V+SFE E+ + D G + ++I+++LP V +L + K
Sbjct: 1180 YNNTIIAEIDGVVSFED---IEAGYSADEQIDEATGKRSLVINEYLPSGVRPTLVIAGKG 1236
Query: 198 DVHRVYSFRDAFALFDFDDNSIEDLKLLLIRCVISPLYLKTEDGRKFLAFLFGLSKPMLK 257
D Y +F D + I +L + G ++ LF KP
Sbjct: 1237 DKAVRYHLEPKTVIFVHDGDKIAQADILAKTPKAAAKSKDITGGLPRVSELFEARKPKNA 1296
Query: 258 DVLAMIKSQISFERKSMLEAYGDVLYRAWKGVEEGFREDVESGFLQVLIEGAIHASSR 315
V+A I + F++ L + ++ +A G + D +S +QV IHA +
Sbjct: 1297 AVIAEIDGVVRFDKP--LRSKERIIIQAEDGTSAEYLID-KSKHIQVRDGEFIHAGEK 1351
>sp|Q5HVY8|RPOC_CAMJR DNA-directed RNA polymerase subunit beta' OS=Campylobacter jejuni
(strain RM1221) GN=rpoC PE=3 SV=1
Length = 1517
Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 12/178 (6%)
Query: 144 HNNLILFESDSVLSFEIASLCESWWKND------LGGKEMLISQFLPFLVSRSLTLKKKV 197
+NN I+ E D V+SFE E+ + D G + ++I+++LP V +L + K
Sbjct: 1180 YNNTIIAEIDGVVSFED---IEAGYSADEQIDEATGKRSLVINEYLPSGVRPTLVIAGKG 1236
Query: 198 DVHRVYSFRDAFALFDFDDNSIEDLKLLLIRCVISPLYLKTEDGRKFLAFLFGLSKPMLK 257
D Y +F D + I +L + G ++ LF KP
Sbjct: 1237 DKAVRYHLEPKTVIFVHDGDKIAQADILAKTPKAAAKSKDITGGLPRVSELFEARKPKNA 1296
Query: 258 DVLAMIKSQISFERKSMLEAYGDVLYRAWKGVEEGFREDVESGFLQVLIEGAIHASSR 315
V+A I + F++ L + ++ +A G + D +S +QV IHA +
Sbjct: 1297 AVIAEIDGVVRFDKP--LRSKERIIIQAEDGTSAEYLID-KSKHIQVRDGEFIHAGEK 1351
>sp|B7GU64|PUR7_BIFLS Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Bifidobacterium longum subsp. infantis (strain ATCC
15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) GN=purC
PE=3 SV=1
Length = 250
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 36/168 (21%)
Query: 505 FQFNKVVGLDILLSALANDQSQVAQKITRLLMPSYFPLKVNIKEACSRCVTIVKRSPVAG 564
F K G+D L ND Q+ +K+ + FPL++ ++ VA
Sbjct: 58 FDLLKKRGIDSHLIKRVNDTGQLVRKV------NMFPLEIVLRN-------------VAA 98
Query: 565 ARFC-EFAVSEGAPLESLVELVTVFIRLVLSHDK-LDEDQIEGL-------LAAVSYLCK 615
FC V EG PL+ V + F++ HD +++D + L LA ++ L +
Sbjct: 99 GHFCSRLGVEEGLPLKEPV--LEYFLKNDDLHDPFVNDDDLVALDVCTREDLAEIAPLAR 156
Query: 616 DIAREQCYKNALKELFANDKVKSLFAAASTGRARSSVFEIVSTVSPDN 663
I AL E+FA VK + GRA + ++PD+
Sbjct: 157 KI------NEALIEIFAKIDVKLVDFKIEMGRATDGTLLLADEITPDS 198
>sp|O28422|Y1856_ARCFU Uncharacterized protein AF_1856 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_1856 PE=4 SV=1
Length = 614
Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 475 PRLGHLMQDNVLSVRLAM---ADLLLLLRDIRTFQFNKVVGLDILLSALANDQSQVAQKI 531
P LGHL D+V ++RL M D+ + +IR ++ N + ++ L AL N ++ A+++
Sbjct: 339 PPLGHLCGDSVPAIRLLMKYEGDIYKVAEEIRNYKMNSFIDPEMALCAL-NTITRKAEEV 397
Query: 532 TR 533
R
Sbjct: 398 KR 399
>sp|Q8G5A9|PUR7_BIFLO Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Bifidobacterium longum (strain NCC 2705) GN=purC PE=3
SV=1
Length = 250
Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 36/168 (21%)
Query: 505 FQFNKVVGLDILLSALANDQSQVAQKITRLLMPSYFPLKVNIKEACSRCVTIVKRSPVAG 564
F K G+D L +D Q+ +K+ + FPL++ ++ VA
Sbjct: 58 FDLLKKRGIDSHLIKRVDDTGQLVRKV------NMFPLEIVLRN-------------VAA 98
Query: 565 ARFC-EFAVSEGAPLESLVELVTVFIRLVLSHDK-LDEDQIEGL-------LAAVSYLCK 615
FC V EG PL+ V + F++ HD +++D + L LA ++ L +
Sbjct: 99 GHFCSRLGVEEGLPLKEPV--LEYFLKNDDLHDPFVNDDDLVALGVCTREDLAEIAPLAR 156
Query: 616 DIAREQCYKNALKELFANDKVKSLFAAASTGRARSSVFEIVSTVSPDN 663
I AL E+FA VK + GRA + ++PD+
Sbjct: 157 KI------NEALIEIFAKIDVKLVDFKIEMGRATDGTLLLADEITPDS 198
>sp|B3DT37|PUR7_BIFLD Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Bifidobacterium longum (strain DJO10A) GN=purC PE=3
SV=1
Length = 250
Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 36/168 (21%)
Query: 505 FQFNKVVGLDILLSALANDQSQVAQKITRLLMPSYFPLKVNIKEACSRCVTIVKRSPVAG 564
F K G+D L +D Q+ +K+ + FPL++ ++ VA
Sbjct: 58 FDLLKKRGIDSHLIKRVDDTGQLVRKV------NMFPLEIVLRN-------------VAA 98
Query: 565 ARFC-EFAVSEGAPLESLVELVTVFIRLVLSHDK-LDEDQIEGL-------LAAVSYLCK 615
FC V EG PL+ V + F++ HD +++D + L LA ++ L +
Sbjct: 99 GHFCSRLGVEEGLPLKEPV--LEYFLKNDDLHDPFVNDDDLVALGVCTREDLAEIAPLAR 156
Query: 616 DIAREQCYKNALKELFANDKVKSLFAAASTGRARSSVFEIVSTVSPDN 663
I AL E+FA VK + GRA + ++PD+
Sbjct: 157 KI------NEALIEIFAKIDVKLVDFKIEMGRATDGTLLLADEITPDS 198
>sp|A0AI65|PROB_LISW6 Glutamate 5-kinase OS=Listeria welshimeri serovar 6b (strain ATCC
35897 / DSM 20650 / SLCC5334) GN=proB PE=3 SV=1
Length = 276
Score = 35.0 bits (79), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 402 DCPDVRVVAVEGCCRILHL-------FWELIPSATITKIITKIFDDNSHDLCNEVRLATV 454
D PD++ VA G ++H+ + +++ +T+ +T F + ++ N +
Sbjct: 72 DIPDLQAVASVGQSELMHIYSKFFGEYGQVVGQVLLTRDVTD-FPISRENVMNTLESLLS 130
Query: 455 NGIIYLLGNPLSHEVLKVLLPRLGHLMQ--DN----VLSVRLAMADLLLLLRDIRTF 505
GII P+ +E V + L H+ + DN + RL ADLL++L DI F
Sbjct: 131 RGII-----PIVNENDTVAVEELEHVTKYGDNDLLSAIVARLVQADLLIMLSDIDGF 182
>sp|P53065|TAD1_YEAST tRNA-specific adenosine deaminase 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TAD1 PE=1 SV=1
Length = 400
Score = 34.7 bits (78), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 596 DKLDEDQIEGLLAAVSYLCKDIAREQCYKNALKELFANDKVKSLFAAASTGRARSSVFEI 655
DKLDE+ + GL+ +V D + E+ N ++ F K L + +R + +E+
Sbjct: 293 DKLDEEDVPGLMCSVKLFMDDFSTEEAILNGVRNGFYTKSSKPLRKHCQSQVSRFAQWEL 352
Query: 656 VSTVSPD 662
+ P+
Sbjct: 353 FKKIRPE 359
>sp|Q38951|2AAG_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A
gamma isoform OS=Arabidopsis thaliana GN=PP2AA3 PE=1
SV=2
Length = 587
Score = 34.3 bits (77), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 394 LLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLAT 453
+ E L DD VR++AVEGC + L L P + I+ I + S D VR
Sbjct: 206 MFEDLTQDDQDSVRLLAVEGCAALGKL---LEPQDCVAHILPVIV-NFSQDKSWRVRYMV 261
Query: 454 VNGIIYLLGNPLSHEVLKV-LLPRLGHLMQDNVLSVRLAMA 493
N +Y L + E + L+P L+ DN VR+A A
Sbjct: 262 ANQ-LYELCEAVGPEPTRTDLVPAYARLLCDNEAEVRIAAA 301
>sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A
beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2
Length = 587
Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 394 LLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLAT 453
+ E L DD VR++AVEGC + L L P + I+ I + S D VR
Sbjct: 206 MFEDLTQDDQDSVRLLAVEGCAALGKL---LEPQDCVQHILPVIV-NFSQDKSWRVRYMV 261
Query: 454 VNGIIYLLGNPLSHEVLKV-LLPRLGHLMQDNVLSVRLAMA 493
N +Y L + E + L+P L++DN VR+A A
Sbjct: 262 ANQ-LYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAA 301
>sp|A5EXP1|PUR7_DICNV Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Dichelobacter nodosus (strain VCS1703A) GN=purC PE=3
SV=1
Length = 239
Score = 33.9 bits (76), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 72/179 (40%), Gaps = 32/179 (17%)
Query: 492 MADLLLLLRDIRTFQFNKVVGLDILLSALA--NDQSQVAQKITRLLMPSYFPLKVNIKEA 549
+AD +L I T F + DI + ND+ Q+ QK+T FPL+V
Sbjct: 43 IADKGILNNQITTLIFKVLKAADIPTHHIETLNDREQLCQKVT------IFPLEV----- 91
Query: 550 CSRCVTIVKRSPVAGARFCEFAVSEGAPLESLVELVTVFIRLVLSHDKLDEDQIEG---- 605
+ R+ VAG+ + EG L+++V + +DKL++ I
Sbjct: 92 -------IVRNTVAGSMAKRLGMEEGTELDNVV------FEICYKNDKLNDPLINDDHAV 138
Query: 606 LLAAVSYLCKDIAREQCYK--NALKELFANDKVKSLFAAASTGRARSSVFEIVSTVSPD 662
L A SY D E K +L LFA ++ + GR + + +SPD
Sbjct: 139 ALGAASYEDLDTIYELTDKINQSLSALFAACQINLVDFKIEFGRTAAGEIVLADEISPD 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,648,865
Number of Sequences: 539616
Number of extensions: 17561264
Number of successful extensions: 46711
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 46676
Number of HSP's gapped (non-prelim): 53
length of query: 1263
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1134
effective length of database: 121,958,995
effective search space: 138301500330
effective search space used: 138301500330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)