Query 000832
Match_columns 1263
No_of_seqs 145 out of 222
Neff 3.5
Searched_HMMs 46136
Date Tue Apr 2 00:20:21 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1949 Uncharacterized conser 100.0 1E-177 2E-182 1513.5 40.2 979 172-1260 1-1003(1005)
2 PF12422 Condensin2nSMC: Conde 100.0 9.5E-39 2.1E-43 320.5 14.3 152 226-377 1-152 (152)
3 KOG0211 Protein phosphatase 2A 99.7 3.9E-16 8.5E-21 189.0 17.9 156 339-505 193-349 (759)
4 PF01602 Adaptin_N: Adaptin N 98.2 0.00053 1.1E-08 79.5 27.7 261 244-539 65-332 (526)
5 PRK09687 putative lyase; Provi 98.1 0.00023 5.1E-09 79.0 19.9 163 344-538 23-186 (280)
6 PRK13800 putative oxidoreducta 97.9 0.00076 1.7E-08 85.3 22.5 117 396-537 748-864 (897)
7 PF12348 CLASP_N: CLASP N term 97.9 0.0002 4.3E-09 75.0 14.0 149 347-506 56-211 (228)
8 PRK09687 putative lyase; Provi 97.9 0.00023 4.9E-09 79.1 14.6 179 347-561 57-236 (280)
9 PTZ00429 beta-adaptin; Provisi 97.8 0.14 3E-06 64.6 37.9 143 342-499 103-246 (746)
10 KOG2171 Karyopherin (importin) 97.7 0.067 1.4E-06 68.9 33.6 163 339-510 343-513 (1075)
11 PRK13800 putative oxidoreducta 97.6 0.00043 9.2E-09 87.5 12.6 116 394-537 625-740 (897)
12 PF01602 Adaptin_N: Adaptin N 97.4 0.0089 1.9E-07 69.6 20.2 255 218-503 111-371 (526)
13 PF10508 Proteasom_PSMB: Prote 97.4 0.074 1.6E-06 63.9 27.2 328 339-684 33-393 (503)
14 KOG2171 Karyopherin (importin) 97.2 0.28 6.1E-06 63.5 30.0 178 343-535 4-183 (1075)
15 KOG1525 Sister chromatid cohes 97.0 2 4.3E-05 57.4 36.0 432 106-571 19-485 (1266)
16 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0017 3.7E-08 62.5 6.5 83 450-535 3-91 (97)
17 PF13646 HEAT_2: HEAT repeats; 96.6 0.01 2.2E-07 53.2 8.2 85 347-457 3-87 (88)
18 PF12348 CLASP_N: CLASP N term 96.6 0.035 7.5E-07 58.5 13.2 189 353-569 16-217 (228)
19 PTZ00429 beta-adaptin; Provisi 96.5 2.3 4.9E-05 54.3 30.6 211 342-571 67-284 (746)
20 PF13646 HEAT_2: HEAT repeats; 96.5 0.013 2.8E-07 52.5 8.0 82 395-496 4-87 (88)
21 KOG2025 Chromosome condensatio 96.4 0.066 1.4E-06 66.3 15.6 229 292-538 33-292 (892)
22 PF02985 HEAT: HEAT repeat; I 96.4 0.0037 7.9E-08 48.3 3.4 30 473-502 1-30 (31)
23 KOG0211 Protein phosphatase 2A 96.3 0.012 2.6E-07 73.8 9.4 178 340-533 312-501 (759)
24 KOG2259 Uncharacterized conser 96.0 0.19 4.2E-06 62.1 16.8 280 394-689 377-717 (823)
25 PF12717 Cnd1: non-SMC mitotic 96.0 0.18 3.8E-06 52.6 14.5 140 341-492 22-170 (178)
26 COG5096 Vesicle coat complex, 95.9 2.3 5E-05 54.2 25.9 126 320-463 70-196 (757)
27 PF12717 Cnd1: non-SMC mitotic 95.9 0.11 2.4E-06 54.1 12.3 109 357-480 1-110 (178)
28 COG1413 FOG: HEAT repeat [Ener 95.8 0.27 5.9E-06 54.8 15.8 94 343-462 42-135 (335)
29 KOG1824 TATA-binding protein-i 95.8 1.3 2.9E-05 56.9 22.8 251 215-490 851-1122(1233)
30 cd00020 ARM Armadillo/beta-cat 95.7 0.065 1.4E-06 49.3 9.0 104 393-500 10-119 (120)
31 COG5218 YCG1 Chromosome conden 95.6 0.7 1.5E-05 56.9 19.1 150 293-457 39-194 (885)
32 PF10508 Proteasom_PSMB: Prote 95.6 4.3 9.3E-05 49.2 25.7 154 342-501 75-231 (503)
33 PF12719 Cnd3: Nuclear condens 95.4 0.41 8.8E-06 53.7 15.6 206 300-545 26-242 (298)
34 KOG1242 Protein containing ada 95.3 2.4 5.1E-05 52.5 22.2 278 215-512 128-456 (569)
35 KOG1240 Protein kinase contain 95.3 0.11 2.4E-06 67.3 11.6 245 250-506 368-651 (1431)
36 KOG1242 Protein containing ada 95.3 0.058 1.3E-06 65.8 8.8 184 334-527 362-551 (569)
37 PF12755 Vac14_Fab1_bd: Vacuol 94.6 0.19 4.1E-06 48.7 8.7 83 407-494 3-90 (97)
38 PF05004 IFRD: Interferon-rela 94.5 5.1 0.00011 46.0 21.4 223 294-524 38-285 (309)
39 PF13513 HEAT_EZ: HEAT-like re 94.4 0.07 1.5E-06 45.1 4.9 52 358-414 1-52 (55)
40 KOG1060 Vesicle coat complex A 94.3 2.3 5E-05 54.0 18.9 92 346-454 110-201 (968)
41 KOG2025 Chromosome condensatio 94.1 2.5 5.4E-05 53.3 18.6 106 297-414 78-188 (892)
42 KOG0212 Uncharacterized conser 93.9 0.23 4.9E-06 60.7 9.4 126 396-525 6-138 (675)
43 KOG2259 Uncharacterized conser 93.9 11 0.00024 47.6 23.4 179 348-538 238-473 (823)
44 PF05918 API5: Apoptosis inhib 93.8 2 4.4E-05 53.1 17.1 104 342-462 22-125 (556)
45 KOG1240 Protein kinase contain 93.5 0.65 1.4E-05 60.7 12.7 251 344-629 422-700 (1431)
46 PF12460 MMS19_C: RNAPII trans 93.3 7 0.00015 46.1 20.1 185 301-500 190-393 (415)
47 KOG0212 Uncharacterized conser 93.3 1.1 2.4E-05 55.1 13.5 162 340-512 81-253 (675)
48 cd00020 ARM Armadillo/beta-cat 93.3 0.28 6E-06 45.2 7.0 109 343-460 6-118 (120)
49 PLN03200 cellulose synthase-in 93.1 57 0.0012 46.5 34.6 302 340-672 442-780 (2102)
50 KOG1848 Uncharacterized conser 93.1 2.5 5.4E-05 56.3 17.0 222 273-500 868-1131(1610)
51 KOG1949 Uncharacterized conser 93.1 7.9 0.00017 49.1 20.3 313 350-718 226-556 (1005)
52 KOG1525 Sister chromatid cohes 93.0 41 0.00088 45.8 27.8 362 128-533 14-398 (1266)
53 PF12719 Cnd3: Nuclear condens 92.9 2 4.4E-05 48.3 14.3 127 339-474 22-158 (298)
54 PLN03200 cellulose synthase-in 92.9 11 0.00024 52.9 23.3 173 344-525 609-797 (2102)
55 KOG1077 Vesicle coat complex A 92.8 4.9 0.00011 50.9 18.1 274 224-523 170-455 (938)
56 KOG2023 Nuclear transport rece 92.6 0.53 1.1E-05 58.6 9.8 206 339-560 388-615 (885)
57 PF02985 HEAT: HEAT repeat; I 92.3 0.2 4.3E-06 38.7 3.9 27 393-423 3-29 (31)
58 TIGR02270 conserved hypothetic 92.2 2.2 4.7E-05 50.9 14.1 127 346-503 119-269 (410)
59 COG1413 FOG: HEAT repeat [Ener 91.9 2 4.3E-05 48.1 12.7 147 345-532 107-265 (335)
60 COG5096 Vesicle coat complex, 91.8 0.95 2.1E-05 57.4 10.9 106 414-525 71-179 (757)
61 TIGR02270 conserved hypothetic 90.2 2.4 5.2E-05 50.5 11.8 144 348-535 59-202 (410)
62 KOG1060 Vesicle coat complex A 89.9 35 0.00076 44.2 21.4 143 342-503 69-211 (968)
63 PF13513 HEAT_EZ: HEAT-like re 89.8 0.56 1.2E-05 39.7 4.6 52 448-499 2-55 (55)
64 PF01347 Vitellogenin_N: Lipop 89.6 3.7 8.1E-05 50.0 13.1 132 401-564 446-592 (618)
65 KOG1820 Microtubule-associated 89.2 6.2 0.00013 50.9 14.9 199 320-538 273-476 (815)
66 KOG0915 Uncharacterized conser 89.1 1.1E+02 0.0025 42.4 35.9 400 270-692 973-1440(1702)
67 KOG1077 Vesicle coat complex A 88.7 87 0.0019 40.6 23.3 90 439-532 335-425 (938)
68 cd08050 TAF6 TATA Binding Prot 88.5 5.4 0.00012 46.4 12.8 122 385-510 173-306 (343)
69 KOG1248 Uncharacterized conser 88.3 16 0.00035 48.6 17.6 165 336-504 731-901 (1176)
70 smart00638 LPD_N Lipoprotein N 87.0 15 0.00033 44.8 15.9 141 396-565 399-549 (574)
71 KOG1061 Vesicle coat complex A 86.9 13 0.00028 47.5 15.3 214 339-571 45-266 (734)
72 COG5369 Uncharacterized conser 85.2 20 0.00042 44.8 15.1 228 291-522 306-572 (743)
73 KOG0213 Splicing factor 3b, su 84.8 54 0.0012 42.5 18.8 106 398-504 724-831 (1172)
74 KOG0414 Chromosome condensatio 84.4 27 0.00059 46.6 16.8 242 284-537 159-425 (1251)
75 KOG1967 DNA repair/transcripti 84.1 7.1 0.00015 50.7 11.3 145 342-495 865-1018(1030)
76 KOG1020 Sister chromatid cohes 83.2 18 0.00038 49.3 14.6 141 395-544 821-965 (1692)
77 KOG0414 Chromosome condensatio 83.1 57 0.0012 43.9 18.8 264 227-522 176-447 (1251)
78 KOG2032 Uncharacterized conser 82.7 36 0.00079 42.1 15.9 203 284-495 185-410 (533)
79 PF12460 MMS19_C: RNAPII trans 82.7 1.1E+02 0.0024 36.3 25.2 129 361-497 164-294 (415)
80 PF13251 DUF4042: Domain of un 82.2 13 0.00028 40.3 11.0 108 395-502 45-175 (182)
81 KOG1241 Karyopherin (importin) 82.1 19 0.00042 46.2 13.7 78 338-419 358-435 (859)
82 KOG1059 Vesicle coat complex A 82.1 22 0.00047 45.6 14.1 208 339-561 139-404 (877)
83 PF14500 MMS19_N: Dos2-interac 81.1 18 0.00039 40.9 12.1 108 350-464 5-113 (262)
84 PF10363 DUF2435: Protein of u 80.9 8.6 0.00019 37.3 8.3 69 392-464 5-74 (92)
85 KOG1943 Beta-tubulin folding c 80.8 1.9E+02 0.0041 39.1 21.9 285 324-653 153-495 (1133)
86 KOG1517 Guanine nucleotide bin 79.6 11 0.00023 49.8 10.6 98 357-464 570-673 (1387)
87 PLN03076 ARF guanine nucleotid 79.5 57 0.0012 45.9 18.0 169 272-442 1208-1403(1780)
88 PF13001 Ecm29: Proteasome sta 79.4 45 0.00098 40.8 15.6 92 402-496 386-483 (501)
89 KOG2023 Nuclear transport rece 79.3 15 0.00032 46.7 11.4 126 342-477 172-304 (885)
90 KOG0915 Uncharacterized conser 78.4 97 0.0021 43.0 18.7 394 336-744 810-1323(1702)
91 cd06561 AlkD_like A new struct 77.7 94 0.002 32.3 16.7 128 337-491 68-195 (197)
92 KOG0946 ER-Golgi vesicle-tethe 77.7 2.2E+02 0.0048 37.6 20.7 278 402-725 35-351 (970)
93 KOG1248 Uncharacterized conser 77.5 2.2E+02 0.0047 38.9 21.2 152 344-500 697-855 (1176)
94 KOG2062 26S proteasome regulat 77.3 11 0.00024 48.1 9.7 113 394-524 523-636 (929)
95 PF04826 Arm_2: Armadillo-like 76.4 19 0.00041 40.7 10.5 104 393-500 57-162 (254)
96 PF04826 Arm_2: Armadillo-like 75.8 34 0.00073 38.7 12.2 149 393-565 15-169 (254)
97 KOG0213 Splicing factor 3b, su 74.7 23 0.0005 45.5 11.4 166 327-500 742-911 (1172)
98 KOG0166 Karyopherin (importin) 74.2 29 0.00062 43.1 11.9 179 319-510 88-275 (514)
99 KOG2011 Sister chromatid cohes 73.8 1.5E+02 0.0032 40.0 18.6 140 399-548 296-443 (1048)
100 KOG1243 Protein kinase [Genera 73.2 4.2 9E-05 51.3 4.8 141 344-495 369-509 (690)
101 KOG2032 Uncharacterized conser 73.0 21 0.00045 44.1 10.2 145 386-535 254-411 (533)
102 COG5098 Chromosome condensatio 72.2 2.3E+02 0.0049 37.1 18.6 109 349-462 304-415 (1128)
103 KOG1058 Vesicle coat complex C 72.0 1.8E+02 0.0039 38.2 17.9 276 414-726 73-390 (948)
104 COG5098 Chromosome condensatio 71.5 39 0.00085 43.4 12.2 113 387-500 296-414 (1128)
105 KOG2213 Apoptosis inhibitor 5/ 71.2 30 0.00066 41.8 10.8 145 342-500 24-179 (460)
106 PF08569 Mo25: Mo25-like; Int 70.6 44 0.00096 39.3 12.0 122 349-471 169-292 (335)
107 KOG4413 26S proteasome regulat 70.5 70 0.0015 38.3 13.3 179 340-522 78-265 (524)
108 KOG2549 Transcription initiati 69.9 15 0.00033 45.6 8.3 133 384-544 201-353 (576)
109 PF05004 IFRD: Interferon-rela 69.2 2.3E+02 0.0049 33.0 23.0 141 337-484 122-285 (309)
110 KOG2062 26S proteasome regulat 68.8 67 0.0015 41.6 13.5 128 342-492 517-644 (929)
111 COG5240 SEC21 Vesicle coat com 66.7 1.8E+02 0.0038 37.3 16.0 169 308-499 253-440 (898)
112 PF12830 Nipped-B_C: Sister ch 66.5 1.5E+02 0.0033 31.8 14.0 131 428-571 4-135 (187)
113 KOG2137 Protein kinase [Signal 66.4 35 0.00076 43.6 10.6 100 391-495 390-490 (700)
114 KOG2933 Uncharacterized conser 65.8 62 0.0013 38.3 11.6 137 351-501 95-234 (334)
115 KOG1061 Vesicle coat complex A 65.3 28 0.00061 44.7 9.5 111 341-466 83-193 (734)
116 PF12530 DUF3730: Protein of u 64.3 2.4E+02 0.0051 31.4 17.3 184 348-552 5-199 (234)
117 cd00872 PI3Ka_I Phosphoinositi 62.9 53 0.0011 35.4 9.8 119 346-493 41-162 (171)
118 PF08713 DNA_alkylation: DNA a 62.3 75 0.0016 33.5 10.8 157 249-436 28-196 (213)
119 PF08167 RIX1: rRNA processing 61.6 1.5E+02 0.0031 31.3 12.6 118 339-463 20-144 (165)
120 COG5215 KAP95 Karyopherin (imp 60.6 4.8E+02 0.01 33.7 22.1 297 332-665 483-817 (858)
121 PF10521 DUF2454: Protein of u 60.5 2.5E+02 0.0054 32.0 15.1 184 314-506 18-258 (282)
122 KOG2160 Armadillo/beta-catenin 60.1 60 0.0013 38.7 10.4 100 396-499 130-238 (342)
123 PF14500 MMS19_N: Dos2-interac 58.6 72 0.0016 36.2 10.5 105 395-502 4-112 (262)
124 PF05918 API5: Apoptosis inhib 57.5 3.8E+02 0.0082 34.2 17.0 197 392-608 25-247 (556)
125 PF12765 Cohesin_HEAT: HEAT re 52.3 15 0.00032 31.0 2.9 25 472-496 18-42 (42)
126 COG5181 HSH155 U2 snRNP splice 48.7 67 0.0015 41.0 8.7 172 320-500 522-716 (975)
127 PF13251 DUF4042: Domain of un 48.7 23 0.00049 38.4 4.4 52 448-499 1-67 (182)
128 cd03561 VHS VHS domain family; 47.6 1.1E+02 0.0023 31.1 8.7 71 473-543 38-117 (133)
129 KOG1517 Guanine nucleotide bin 47.5 80 0.0017 42.4 9.4 60 357-420 613-672 (1387)
130 KOG1243 Protein kinase [Genera 46.0 75 0.0016 40.8 8.7 107 392-502 332-438 (690)
131 PF14868 DUF4487: Domain of un 44.1 5.1E+02 0.011 33.1 15.3 99 404-503 452-554 (559)
132 KOG1020 Sister chromatid cohes 43.7 4E+02 0.0086 37.6 14.9 145 342-499 814-958 (1692)
133 PF12765 Cohesin_HEAT: HEAT re 43.6 28 0.0006 29.4 3.2 23 387-412 18-40 (42)
134 KOG0392 SNF2 family DNA-depend 43.6 2E+02 0.0043 39.7 12.0 194 362-577 794-999 (1549)
135 KOG0392 SNF2 family DNA-depend 43.1 1.5E+02 0.0031 40.8 10.8 151 347-504 170-331 (1549)
136 KOG1991 Nuclear transport rece 42.7 1.1E+03 0.023 32.4 27.7 187 595-801 427-645 (1010)
137 PF08167 RIX1: rRNA processing 42.5 2.5E+02 0.0054 29.6 10.8 79 386-465 21-100 (165)
138 COG5218 YCG1 Chromosome conden 42.0 9.2E+02 0.02 31.5 18.0 104 386-496 87-194 (885)
139 KOG2973 Uncharacterized conser 41.2 1.6E+02 0.0035 35.1 9.8 21 394-414 7-27 (353)
140 KOG0413 Uncharacterized conser 41.1 2.5E+02 0.0054 37.9 12.1 149 391-539 473-688 (1529)
141 PF08713 DNA_alkylation: DNA a 41.1 2.1E+02 0.0045 30.3 10.0 130 346-500 53-183 (213)
142 cd07920 Pumilio Pumilio-family 40.5 5.8E+02 0.012 28.7 15.9 181 234-445 14-199 (322)
143 PF12231 Rif1_N: Rap1-interact 39.8 7.2E+02 0.016 29.6 25.1 239 203-461 90-351 (372)
144 PF10136 SpecificRecomb: Site- 39.8 4.4E+02 0.0095 34.2 14.0 169 527-716 189-366 (643)
145 cd00197 VHS_ENTH_ANTH VHS, ENT 39.6 1.2E+02 0.0025 29.7 7.4 63 473-535 38-110 (115)
146 smart00638 LPD_N Lipoprotein N 38.6 3.6E+02 0.0078 33.3 12.9 92 396-500 452-544 (574)
147 KOG1789 Endocytosis protein RM 38.6 1.9E+02 0.0041 39.3 10.6 205 368-611 1752-1974(2235)
148 KOG1241 Karyopherin (importin) 37.9 1.1E+03 0.025 31.4 30.6 275 214-504 83-396 (859)
149 COG5116 RPN2 26S proteasome re 37.3 81 0.0017 40.0 7.0 63 342-414 514-576 (926)
150 KOG2137 Protein kinase [Signal 36.3 4.7E+02 0.01 34.2 13.4 83 418-500 374-457 (700)
151 PF05997 Nop52: Nucleolar prot 35.5 2E+02 0.0043 31.9 9.1 72 250-322 125-210 (217)
152 PF07624 PSD2: Protein of unkn 35.4 57 0.0012 30.5 4.3 60 478-538 13-72 (76)
153 PF14664 RICTOR_N: Rapamycin-i 35.4 4.8E+02 0.01 31.4 12.8 105 389-500 24-136 (371)
154 KOG4653 Uncharacterized conser 34.7 3.6E+02 0.0077 36.1 12.1 178 353-540 736-918 (982)
155 KOG2956 CLIP-associating prote 34.5 6.4E+02 0.014 31.9 13.6 101 396-504 377-480 (516)
156 KOG2160 Armadillo/beta-catenin 33.9 3.8E+02 0.0083 32.2 11.5 219 239-497 51-278 (342)
157 PF11701 UNC45-central: Myosin 33.5 68 0.0015 33.5 5.0 128 356-496 17-154 (157)
158 PF10274 ParcG: Parkin co-regu 33.0 2.7E+02 0.0059 30.7 9.5 81 396-478 44-130 (183)
159 PF00790 VHS: VHS domain; Int 32.8 1.8E+02 0.004 29.7 7.8 101 435-537 7-115 (140)
160 PF03810 IBN_N: Importin-beta 32.6 1.1E+02 0.0024 27.2 5.5 36 394-429 18-63 (77)
161 PF01347 Vitellogenin_N: Lipop 32.5 1.1E+03 0.023 29.4 22.4 133 336-496 482-617 (618)
162 COG5215 KAP95 Karyopherin (imp 32.3 1.3E+03 0.028 30.3 19.0 148 355-506 189-362 (858)
163 KOG0929 Guanine nucleotide exc 31.2 5.9E+02 0.013 36.1 13.8 151 301-452 1120-1289(1514)
164 KOG0166 Karyopherin (importin) 31.0 3.9E+02 0.0085 33.7 11.4 148 344-501 195-351 (514)
165 PF08569 Mo25: Mo25-like; Int 30.7 4.7E+02 0.01 31.1 11.6 138 273-424 138-284 (335)
166 PF13001 Ecm29: Proteasome sta 30.1 2.8E+02 0.006 34.3 10.0 246 198-464 200-490 (501)
167 PF14676 FANCI_S2: FANCI solen 30.0 1.7E+02 0.0037 31.2 7.2 120 240-368 37-156 (158)
168 COG5099 RNA-binding protein of 28.5 1.6E+03 0.034 30.1 17.4 80 231-313 441-523 (777)
169 smart00145 PI3Ka Phosphoinosit 28.2 4.6E+02 0.01 28.6 10.2 118 347-493 47-167 (184)
170 PF10274 ParcG: Parkin co-regu 27.9 1.4E+02 0.0031 32.8 6.3 80 420-499 25-107 (183)
171 PF12074 DUF3554: Domain of un 27.8 1E+03 0.022 27.6 16.3 50 389-442 203-254 (339)
172 KOG1820 Microtubule-associated 26.9 4.2E+02 0.0091 35.2 11.1 88 389-477 370-457 (815)
173 PF11701 UNC45-central: Myosin 26.2 2.1E+02 0.0047 29.9 7.1 99 395-498 9-114 (157)
174 KOG1991 Nuclear transport rece 26.1 7.8E+02 0.017 33.5 13.1 108 395-504 42-159 (1010)
175 COG5330 Uncharacterized protei 26.0 1.9E+02 0.004 35.0 7.3 61 349-415 12-72 (364)
176 PF10521 DUF2454: Protein of u 25.9 1E+03 0.022 27.2 13.4 145 340-484 115-277 (282)
177 COG5181 HSH155 U2 snRNP splice 25.8 7.3E+02 0.016 32.5 12.3 148 351-504 737-915 (975)
178 PF11865 DUF3385: Domain of un 25.2 4.9E+02 0.011 27.6 9.5 62 441-502 94-158 (160)
179 PF11707 Npa1: Ribosome 60S bi 24.8 1.2E+03 0.025 27.4 21.0 221 338-571 50-312 (330)
180 PF06371 Drf_GBD: Diaphanous G 24.7 2.8E+02 0.006 28.7 7.6 84 417-500 99-186 (187)
181 PF03224 V-ATPase_H_N: V-ATPas 24.3 1.1E+03 0.024 27.0 18.9 78 344-423 106-189 (312)
182 PF04499 SAPS: SIT4 phosphatas 23.8 2.6E+02 0.0056 34.7 8.2 126 415-561 20-151 (475)
183 KOG1293 Proteins containing ar 23.4 4.2E+02 0.0092 34.4 9.9 136 358-501 391-533 (678)
184 PF12422 Condensin2nSMC: Conde 23.1 3.9E+02 0.0085 28.1 8.3 102 397-498 36-145 (152)
185 KOG1848 Uncharacterized conser 22.5 5E+02 0.011 36.4 10.7 204 283-497 907-1182(1610)
186 KOG0929 Guanine nucleotide exc 22.4 1.1E+03 0.024 33.7 13.9 120 396-516 1180-1312(1514)
187 PF05804 KAP: Kinesin-associat 22.3 1.9E+03 0.041 29.0 17.2 187 297-500 450-648 (708)
188 PF10363 DUF2435: Protein of u 21.7 4.4E+02 0.0096 25.8 7.8 69 434-503 5-74 (92)
No 1
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1e-177 Score=1513.46 Aligned_cols=979 Identities=23% Similarity=0.298 Sum_probs=923.7
Q ss_pred CccchhhhhhhHHHHHHHhhccCccchhHhhhhhcccccccCCCCCCHHHHHHHHHHHhhccccccCccchhHHHHHhcC
Q 000832 172 LGGKEMLISQFLPFLVSRSLTLKKKVDVHRVYSFRDAFALFDFDDNSIEDLKLLLIRCVISPLYLKTEDGRKFLAFLFGL 251 (1263)
Q Consensus 172 l~~kE~Lv~qtLp~LL~rSl~~~k~~dI~RL~~lReal~llDf~deS~~slk~LLLrc~~sP~FlkseEGrrFLAflFgl 251 (1263)
.|++|-+.+|-.|+++|++|..+.+++++|.++.|.++.+|||+|++|++++++|+|||++|+|+++||||||+|++|+|
T Consensus 1 mpksnpvtpnkqPsedwneLltefrgkggRalqktfirkLwavqediIananp~llrCf~~p~yik~eeG~rf~s~~f~~ 80 (1005)
T KOG1949|consen 1 MPKSNPVTPNKQPSEDWNELLTEFRGKGGRALQKTFIRKLWAVQEDIIANANPMLLRCFINPNYIKKEEGRRFLSCLFNW 80 (1005)
T ss_pred CCCCCCCCCCCCchhhHHHHHHHHcccchHHHHHHHHHHHHhhhHHHHhccchHHHHHhhhhHhhcChhhhhHHHHHhhH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhhccCcHHHHHHHhHHHHhhhcccchhhHHHHHHhHHHHHHHHhhccCCHHHHHHHHHHHhhHhhc
Q 000832 252 SKPMLKDVLAMIKSQISFERKSMLEAYGDVLYRAWKGVEEGFREDVESGFLQVLIEGAIHASSRAFAASIRRVLGGFVNQ 331 (1263)
Q Consensus 252 ~~~Lik~ih~tIKnQLp~~~kS~le~YGEIyFrAWK~A~gd~~eeIE~~cIQdLm~~AIha~s~~lAaklR~VLs~FHsq 331 (1263)
+.++++.|++++|+|+|...||+|++||||||||||.|+++++|+||++|||++|++||||++.|+++++|+||++||+|
T Consensus 81 ~~~~~k~il~~~k~q~~~l~ks~~~~~geI~frAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hq 160 (1005)
T KOG1949|consen 81 NINFIKMILGTIKNQLQGLQKSLMVYIGEIYFRAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQ 160 (1005)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHhHHHHHHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred CC-CcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHH
Q 000832 332 RT-TPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVA 410 (1263)
Q Consensus 332 K~-~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAA 410 (1263)
|+ ++||++|++|+|.|||||+++++|+.||.||+.||.++||..|||.++|++|..|+|||++|++||.||+||||..|
T Consensus 161 kk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a 240 (1005)
T KOG1949|consen 161 KKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTA 240 (1005)
T ss_pred HHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 85 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHH
Q 000832 411 VEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRL 490 (1263)
Q Consensus 411 A~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRy 490 (1263)
++|+|++.++||++||++++++++.+|++++|+|.+.+||++||+|+..|+.||.+|..++++||+++++++|+|+|||.
T Consensus 241 ~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRv 320 (1005)
T KOG1949|consen 241 ILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRV 320 (1005)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCceeeecChHHHHHHHhcCchHHHHHHHHHhcccCCCCCCChHHHhHHHHHHHhcChHHHHHHHHH
Q 000832 491 AMADLLLLLRDIRTFQFNKVVGLDILLSALANDQSQVAQKITRLLMPSYFPLKVNIKEACSRCVTIVKRSPVAGARFCEF 570 (1263)
Q Consensus 491 AfADLLleLk~irgiKF~~VV~~D~LLaRLa~Ds~~V~k~IvkLLipSfFP~k~s~~E~~~RCi~Lik~nP~Aa~~Fy~~ 570 (1263)
|+.|+|.+|++++.++||+||++||+|++|+.|+..|+++++.+++|||||++.++++||.||+||+++||.||++||+|
T Consensus 321 A~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee~~c~Rc~tlv~~n~~A~~rf~~~ 400 (1005)
T KOG1949|consen 321 AFVDMLLKIKAVRAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEEVWCERCVTLVQMNHAAARRFYQY 400 (1005)
T ss_pred HHHHHHHHHHhhhhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcC-CChHHHHHHHHHHHHhhcc----CCCCChhHHHHHHHHHHHHHhhhhhhHhHHHHHHhHhhhhhHHHHHHhhcc
Q 000832 571 AVSEG-APLESLVELVTVFIRLVLS----HDKLDEDQIEGLLAAVSYLCKDIAREQCYKNALKELFANDKVKSLFAAAST 645 (1263)
Q Consensus 571 a~~~~-a~~~~l~~Li~~ll~~~ls----~~k~~~e~~eg~~~a~a~L~~~L~~~~~~k~~l~~l~~g~~l~~ll~~a~t 645 (1263)
++++| ++.+++.+||++|+||||+ .+++++||.||+.+|++||||.|+.++.||+.|.|...|.+.|.....+.+
T Consensus 401 l~~~~~~~~~~~~hlI~~fln~~~~~~~~~~p~lee~~eG~~ka~~yl~~~lV~d~~Cma~L~e~~~g~k~k~d~~f~~~ 480 (1005)
T KOG1949|consen 401 LHEHTATNIAKLIHLIRHFLNACIQRAVREPPELEEEEEGREKATVYLKTLLVNDVACMAGLLEIIVGLKKKIDRSFENN 480 (1005)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhccH
Confidence 99999 6779999999999999998 788899999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhcccCCCchhHHHHHHHhhhhhcCCCChhhhhHHHHHHHhHHhhccCChhHHHHHHHHHHHHHHhhhhhc
Q 000832 646 GRARSSVFEIVSTVSPDNVVGLLEQCMGLISKCKGLSEDEERQAEVRSAHKLLLSSCAFDDMLEALTMLLQKAVYRCHVK 725 (1263)
Q Consensus 646 ~~a~sa~~~I~s~~~~~~~~~~~~~c~~~~~~~~g~~~~~~~q~~~~sa~~~~~s~~~~d~~~~~l~~~l~~~~~~~~~~ 725 (1263)
..|++.++++.-.+.|+-+++..++|| |.|+|.|+.+|-|++|.|+..++...++++...++.+.|+ +..
T Consensus 481 kea~~~~in~~~~v~p~~~S~V~~dd~-----cksipnDvla~~el~sv~p~~~~p~~~c~vi~t~~S~~~~-----~~d 550 (1005)
T KOG1949|consen 481 KEAKLYTINKFASVLPEYLSKVFKDDR-----CKSIPNDVLALFELMSVMPASAVPPFSCGVISTLRSREEG-----AVD 550 (1005)
T ss_pred HHHHHHhhccccccCHHHHHHhchhhh-----hccCchHHHHHhhhhccChhhcCCchhhccccChhHHHHh-----hcc
Confidence 999999999999999999999999999 9999999999999999999999999999999999999998 788
Q ss_pred cccCCCCCcCccccccCCCccccccccccccCCCCCCCchhhhhhHhhhhhhHHHhhcchhhhhhhhccchHHHHHHHhh
Q 000832 726 FGTEIPKHNVSSVKRKKPKSAVKISGKWKYASGKKASSFEEDYSIAVGIAWQVKDLLTSEDSRKAMLGSQHLELLFLALK 805 (1263)
Q Consensus 726 ~g~~~~~~~~~~~krkk~ks~~k~~~~~~~~~~~~~~~~~~~~~~~~g~awqv~~~l~~~~~r~a~l~s~~~e~~~~~lk 805 (1263)
||++.-..+..|.++||+|+..+.+..|+|+.|+++.||+++ .|+|.+|||+|.++.+|.||.|+.+ ++|.++..++
T Consensus 551 ~gy~vl~~~l~s~~~kkkr~~le~~~~wl~~~~~~aks~lqs--~a~~~~~qikDeykt~d~~k~I~l~-~IE~lL~kee 627 (1005)
T KOG1949|consen 551 KGYCVLLDCLCSWGQKKKRHILELVDNWLPTEHAQAKSNLQS--TASKGRVQIKDEYKTRDVKKEIALV-YIEYLLTKEE 627 (1005)
T ss_pred ccHHHHHHHHHhhhhhcccccccCchhhhhhhhHHHHHHHHh--hcccceeeecchhhhhhhHHHHHHH-HHHHHHHHHh
Confidence 999999999999999999999999999999999999999998 9999999999999999999999997 8999999999
Q ss_pred hHhHhHhhhhcccccccchhhHHHHHHHHHHhhhccCCCCCCCCCCCCCCccccccCCchhhHHHHHHHhhhccCCCCcc
Q 000832 806 VISEVSILHCMYCDYMDVYPVLAYTALALELTLQNIGISRPSGSGSKKDDRTESTRSSSEASFILLAVFHLNSSLCNTSC 885 (1263)
Q Consensus 806 ~is~~~i~~c~~~~~~d~~p~lay~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~c 885 (1263)
+.+.. +-.+|+|+|+.| + .|++++++|. ..|
T Consensus 628 gqeHt---~~~~cllsil~p-------------r---------------------------fI~~~~~~~~------~~e 658 (1005)
T KOG1949|consen 628 GQEHT---KNRECLLSILAP-------------R---------------------------FIKKLNHLLK------ALE 658 (1005)
T ss_pred hcccc---cccceeeeccCh-------------H---------------------------HHHHHHHHHh------hcc
Confidence 99887 888999999999 1 4899999999 999
Q ss_pred hhhhhC-CCCCCCC---CCCCCCcccccc--ccccCcchhhhhhhhcCCC-----CC------CCcccccccchhHHHHH
Q 000832 886 TDELLG-GDSGNPS---KLSPGSKHDKSN--MRQGRGHKVRELQKEASSS-----ND------NGFVCTGQKITSKKVNM 948 (1263)
Q Consensus 886 ~dkl~~-~~~g~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~~~~~~ 948 (1263)
+|++++ |+.|.++ .-+++-..---+ .+..+| |-+++ .| ...+++.. |+.|++||
T Consensus 659 t~~~~~~~~~~tpgllL~k~~~~S~~~ap~~fg~h~r--------D~~I~l~~kF~~~v~v~lsa~e~~tr-gv~~e~k~ 729 (1005)
T KOG1949|consen 659 TSKADLESLLQTPGLLLGKPRGFSEAAAPRAFGLHCR--------DLSIHLQHKFCSEVKVYLSALEDTTR-GVWLESKI 729 (1005)
T ss_pred chHhHhhhhhcCCCccccCCCCCccccCchhhccccc--------ceehHHHHHHHHHHHHHHHHhccccc-cchhHHHH
Confidence 999999 9988777 111111000000 111111 01111 01 11233334 99999999
Q ss_pred HHHHHHHHHhcccccccccCccccccchhHHHHHHHHHhhhhcccccccccccchhhhhhhcchhhhHHHHHHHHhcCCC
Q 000832 949 LTAVLKFIVDSTALGFLSHIRGGCAKFTTAYVQYVISALGQQSRDNLLFNYNDLKETFISLKSSFSYAAKLINLCLRDSS 1028 (1263)
Q Consensus 949 ~t~~lkf~vd~~~~~~~~~~~~~~~~f~s~~~~~~~s~~~~~~~~~~~f~~~~~k~~~~~~kss~syaak~l~l~l~~~~ 1028 (1263)
+++|-+| ++++-|++.+..+....+|-|.|.+|++|.++.| .+.+|+.-+++..++|.++||||+.++++|++|.++
T Consensus 730 l~~i~d~-~e~~e~~~a~~~Qa~i~~~~S~~~~~V~s~~ndh--t~fe~~~~~~~~gi~~t~~s~syv~~~~~Ll~r~~~ 806 (1005)
T KOG1949|consen 730 LSFIQDQ-EEDYEKLHAVIYQAIIQTYLSVCKDVVMSGLNDH--TQFEMQLLQRSLGIMQTVKSFSYVSLLLDLLKRITG 806 (1005)
T ss_pred HHhhhch-HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcCCC--CceeeechhhhhhhhhhhchhHHHHHHHHHHHHHhh
Confidence 9999999 7777899999999999999999999999999999 689999999999999999999999999999999999
Q ss_pred CCCCCChhhhhhHHHHHHHHHHHhhhcchhhhhHHHHHHHHhHHHHHHHhccccccccccCCCccccccccccccchhHH
Q 000832 1029 EASPPPAEAFDLVNELINLICSVELHMDSGYAARLVVVAKAWLLDLILALGSGCIFYQSRAGGVHFTASDHFKVHFPWWL 1108 (1263)
Q Consensus 1029 e~s~~~~eaf~lan~lldl~~sve~~~gs~~a~~lv~~~k~wlp~lil~lg~~~~~~~~~~~~~~~~~~~~~~~~~p~w~ 1108 (1263)
+++.|..+-|+++|+|||+++.|+-.+|+.||.|.|++..+|+|| +.....|.+.+||.|.
T Consensus 807 ~~~~~~~ds~d~~~~lld~~~~V~~sL~~~~ar~~vs~~~~w~~d-------------------~t~~~~H~~mlfs~v~ 867 (1005)
T KOG1949|consen 807 SSLIQKTDSDDEVAMLLDTVQKVFQSLLECIARSFVSQPEEWLRD-------------------STKRMMHHFMLFSIVS 867 (1005)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccch-------------------hhhchhhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999 3444588899999998
Q ss_pred HHHhhhhhcccccCCCCCcCCccCCCCCchhHHHHHHHHHHHhcCCCcchhhhHHHhhhhhhhccccccchhhhhhHHHh
Q 000832 1109 LILARTELDEISKVNSDEDNGRVSKQEEFPEFKKFMELIIPLLKGKPCILDAVGVVFLTGSVVGLERKDFGLFLGLVHFV 1188 (1263)
Q Consensus 1109 ~~~ak~el~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~llk~~~~ild~v~~~~l~~~~~~l~r~d~~~~~gl~~fv 1188 (1263)
.. ++ + |+.|.+.+...+++...+++|++++.+|+|++ .+|+-++.++++..||.-.+||+|-|
T Consensus 868 ~s---------~k-----~--Dvee~~~p~~l~dl~p~~f~li~~i~k~l~~~-~sll~~l~~cI~~ndi~~~~~l~~av 930 (1005)
T KOG1949|consen 868 AS---------SK-----S--DVEELTPPEHLSDLPPFSFCLIGIIIKSLNVV-RSLLDELKACIASNDIEGIVCLTAAV 930 (1005)
T ss_pred cc---------cc-----c--cccccCChhhhhcCCCceeehhHHHHHHHHHH-HHHHHHHHHHHHhccchhHHHHHHhH
Confidence 65 22 2 35566667778899999999999999999999 99999999999999999999999999
Q ss_pred HHhhcCCC-ccccccchhcccccCchhHHHHHHHHHhhchHHHHhHHhhHHhhhhHHhHhhhccCcccccccc
Q 000832 1189 CVKLIGTD-NREWNGLDAMLVSLPDIYPRIEKEIEEQSQEGERQKLLDAKVLLEPVWMHHVFETERFSVMEED 1260 (1263)
Q Consensus 1189 c~kl~g~~-~~~~~~l~~~~~sl~~~~~~i~~~~~~~~~~~~~~~l~~a~~l~~~~~~~~~~~~~~~~~~~~~ 1260 (1263)
|++|+|+| ++.|.+|+.|+.-|+++||.++|+|.|..|+++|.-+|+|++++.|+|+||+||||+|++|+|+
T Consensus 931 ~~~Lv~~e~~~k~~~l~~~l~~l~R~~k~~~keI~e~~D~~er~l~e~A~~~l~~~~~~HilnsldvqlpDEn 1003 (1005)
T KOG1949|consen 931 HIILVINEGKHKSSKLREVLATLHRKLKTFMKEITEEEDSIERFLYESASRTLGELLNSHILNSLDVQLPDEN 1003 (1005)
T ss_pred heeEeecchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999995
No 2
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=100.00 E-value=9.5e-39 Score=320.55 Aligned_cols=152 Identities=46% Similarity=0.778 Sum_probs=149.4
Q ss_pred HHHHhhccccccCccchhHHHHHhcCCHHHHHHHHHHHHhhhccCcHHHHHHHhHHHHhhhcccchhhHHHHHHhHHHHH
Q 000832 226 LIRCVISPLYLKTEDGRKFLAFLFGLSKPMLKDVLAMIKSQISFERKSMLEAYGDVLYRAWKGVEEGFREDVESGFLQVL 305 (1263)
Q Consensus 226 LLrc~~sP~FlkseEGrrFLAflFgl~~~Lik~ih~tIKnQLp~~~kS~le~YGEIyFrAWK~A~gd~~eeIE~~cIQdL 305 (1263)
|++||++|+|++++|||+|||++|+++..+++++|++||+|+|.++++++++||||||+|||+++++..+++|+.||||+
T Consensus 1 ll~~f~~p~~i~~~~g~~fls~l~~~~~~~~~~~~~~i~~~~~~~~~~~le~y~ei~~~aWk~a~~~~~~~~e~~~iq~~ 80 (152)
T PF12422_consen 1 LLRCFMPPSFIKTFEGRKFLSFLFSLSGIFIKKIHKLIKCQIPQVSKSVLELYGEILFRAWKKASKDKLEEIEEVCIQDL 80 (152)
T ss_pred ChhhhcchhhcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCHHHHHHHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCC
Q 000832 306 IEGAIHASSRAFAASIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDP 377 (1263)
Q Consensus 306 m~~AIha~s~~lAaklR~VLs~FHsqK~~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdp 377 (1263)
|++++|+.+++++.++|.+|++||++|++++||+||+|+|.|+|||+++++|+.||.||+.+|.++||+.||
T Consensus 81 ~~~a~~~~~~~~~~~~R~~L~~f~~~k~~~~v~~mL~rl~~PiL~r~L~~~n~~Vr~na~~l~~~aFpl~~p 152 (152)
T PF12422_consen 81 MEAAIHLEYLPLHSKFREVLLSFHSQKKRKGVDEMLLRLYEPILWRALQAANAKVRSNAAALFLDAFPLHDP 152 (152)
T ss_pred HHHhHHhcchHhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCCcchhccHHHHHHHHcCCcCc
Confidence 999999988999999999999999999999999999999999999999999999999999999999999986
No 3
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.69 E-value=3.9e-16 Score=188.96 Aligned_cols=156 Identities=21% Similarity=0.158 Sum_probs=146.0
Q ss_pred HHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHH
Q 000832 339 KMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRIL 418 (1263)
Q Consensus 339 emL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriL 418 (1263)
+.+..++.|++||+..++||+.|.+||++|...|+..+++. .+.+++.+| .+||+|++||||++++.. +
T Consensus 193 ~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~----vk~elr~~~---~~lc~d~~~~Vr~~~a~~----l 261 (759)
T KOG0211|consen 193 EKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDA----VKRELRPIV---QSLCQDDTPMVRRAVASN----L 261 (759)
T ss_pred HHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHH----HHHHHHHHH---HhhccccchhhHHHHHhh----h
Confidence 33488999999999999999999999999999999998654 678999999 999999999999999985 7
Q ss_pred HHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCch-HHHHhHHHhhhhhcCCCchHHHHHHHHHHH
Q 000832 419 HLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSH-EVLKVLLPRLGHLMQDNVLSVRLAMADLLL 497 (1263)
Q Consensus 419 skfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~Sh-e~Lk~LLP~LksLI~DkSWRVRyAfADLLl 497 (1263)
+.+...++.+..++.+.+.+..|..|+||+||.++++++..+++...+. +..+.+.|.+.+...|.+|||||++++.+.
T Consensus 262 ~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~ 341 (759)
T KOG0211|consen 262 GNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFS 341 (759)
T ss_pred HHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhh
Confidence 8888899999999999999999999999999999999999999998888 888889999999999999999999999999
Q ss_pred HhhcccCC
Q 000832 498 LLRDIRTF 505 (1263)
Q Consensus 498 eLk~irgi 505 (1263)
++.+.+|-
T Consensus 342 ~L~~~~~~ 349 (759)
T KOG0211|consen 342 ELSSAVGP 349 (759)
T ss_pred hHHHHhcc
Confidence 99998886
No 4
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.25 E-value=0.00053 Score=79.52 Aligned_cols=261 Identities=18% Similarity=0.212 Sum_probs=167.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhhccCcH----HHHHHHhHHHHhhhcccchhhHHHHHHhHHHHHHHHhhccCCHHHHH
Q 000832 244 FLAFLFGLSKPMLKDVLAMIKSQISFERK----SMLEAYGDVLYRAWKGVEEGFREDVESGFLQVLIEGAIHASSRAFAA 319 (1263)
Q Consensus 244 FLAflFgl~~~Lik~ih~tIKnQLp~~~k----S~le~YGEIyFrAWK~A~gd~~eeIE~~cIQdLm~~AIha~s~~lAa 319 (1263)
++..++.-+++.+..+.+++++.+.+-+. -.+...|.|- ..++.+. ++..+.+..-|- +|-+-+
T Consensus 65 ~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~----l~~~v~~ll~~~-~~~VRk 132 (526)
T PF01602_consen 65 YLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEP----LIPDVIKLLSDP-SPYVRK 132 (526)
T ss_dssp HHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHH----HHHHHHHHHHSS-SHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhH----HHHHHHHHhcCC-chHHHH
Confidence 34444577778888888888888865442 2334444432 3333333 344444444444 343332
Q ss_pred HHHHHHhhHhhcCCCcchHHHHHHh-hHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhh
Q 000832 320 SIRRVLGGFVNQRTTPGVEKMLFNL-TEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKL 398 (1263)
Q Consensus 320 klR~VLs~FHsqK~~kgVdemL~rL-Y~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~L 398 (1263)
+--.-+..++.. +++ +.+. |.|.+.+++...+..|+.+|+.++..+ ..+++. ....+.+.+..|.++
T Consensus 133 ~A~~~l~~i~~~--~p~----~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~----~~~~~~~~~~~L~~~ 200 (526)
T PF01602_consen 133 KAALALLKIYRK--DPD----LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDS----YKSLIPKLIRILCQL 200 (526)
T ss_dssp HHHHHHHHHHHH--CHC----CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHH----HTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc--CHH----HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcch----hhhhHHHHHHHhhhc
Confidence 222222222222 222 2222 789999999999999999999999988 333321 114567778777888
Q ss_pred cCCCChHHHHHHHhhhhHHHHHHHhhCChhHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhh
Q 000832 399 LTDDCPDVRVVAVEGCCRILHLFWELIPSATI-TKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRL 477 (1263)
Q Consensus 399 L~DDtPMVRRAAA~gVcriLskfWEiIP~~~I-~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~L 477 (1263)
+.++.|.++..+++ +|..|...-+...- ..++..+.. +.+..+.+|++.++..+..+... ...+..+.+.+
T Consensus 201 l~~~~~~~q~~il~----~l~~~~~~~~~~~~~~~~i~~l~~-~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~~~~~L 272 (526)
T PF01602_consen 201 LSDPDPWLQIKILR----LLRRYAPMEPEDADKNRIIEPLLN-LLQSSSPSVVYEAIRLIIKLSPS---PELLQKAINPL 272 (526)
T ss_dssp HTCCSHHHHHHHHH----HHTTSTSSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHHHHH
T ss_pred ccccchHHHHHHHH----HHHhcccCChhhhhHHHHHHHHHH-HhhccccHHHHHHHHHHHHhhcc---hHHHHhhHHHH
Confidence 89999999988887 45544333322221 234433333 33466789999999988877665 44778899999
Q ss_pred hhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHh-cCchHHHHHHHHHhcccC
Q 000832 478 GHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALA-NDQSQVAQKITRLLMPSY 539 (1263)
Q Consensus 478 ksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa-~Ds~~V~k~IvkLLipSf 539 (1263)
..+++++++-|||.+.+.|..+.... ...+-...-.+..+. .|+..|+++..++|...-
T Consensus 273 ~~lL~s~~~nvr~~~L~~L~~l~~~~---~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 273 IKLLSSSDPNVRYIALDSLSQLAQSN---PPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHCCHC---HHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred HHHhhcccchhehhHHHHHHHhhccc---chhhhhhhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 99999999999999999999998765 222224444566666 566788888888877654
No 5
>PRK09687 putative lyase; Provisional
Probab=98.09 E-value=0.00023 Score=79.04 Aligned_cols=163 Identities=18% Similarity=0.157 Sum_probs=110.2
Q ss_pred hhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHh
Q 000832 344 LTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWE 423 (1263)
Q Consensus 344 LY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWE 423 (1263)
+-.+.|..++..+++.||..|+.-+... ++. ..|..+..|++|+.|.||+.|+.. |+.+=.
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~----~~~-----------~~~~~l~~ll~~~d~~vR~~A~~a----Lg~lg~ 83 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLR----GGQ-----------DVFRLAIELCSSKNPIERDIGADI----LSQLGM 83 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhc----Ccc-----------hHHHHHHHHHhCCCHHHHHHHHHH----HHhcCC
Confidence 3345666777899999999999887643 221 114555888999999999999985 453211
Q ss_pred hCChhHHHHHHHHHHHH-hccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcc
Q 000832 424 LIPSATITKIITKIFDD-NSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDI 502 (1263)
Q Consensus 424 iIP~~~I~slL~~If~~-LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~i 502 (1263)
+...... ..+++.. +.+|....||..++.+|..+-.. ..+. ...+++.+...+.|++|+||++++.-|.++.+.
T Consensus 84 --~~~~~~~-a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~-~~~~-~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 84 --AKRCQDN-VFNILNNLALEDKSACVRASAINATGHRCKK-NPLY-SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE 158 (280)
T ss_pred --CccchHH-HHHHHHHHHhcCCCHHHHHHHHHHHhccccc-cccc-chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH
Confidence 1111112 2234443 36777889999999998876321 1111 223556677778999999999999998766532
Q ss_pred cCCceeeecChHHHHHHHhcCchHHHHHHHHHhccc
Q 000832 503 RTFQFNKVVGLDILLSALANDQSQVAQKITRLLMPS 538 (1263)
Q Consensus 503 rgiKF~~VV~~D~LLaRLa~Ds~~V~k~IvkLLipS 538 (1263)
. .++.|+..|.++++.||...+.-|-..
T Consensus 159 ~--------ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 159 A--------AIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred H--------HHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 2 457778888777788988888877665
No 6
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.93 E-value=0.00076 Score=85.29 Aligned_cols=117 Identities=20% Similarity=0.120 Sum_probs=71.5
Q ss_pred hhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHH
Q 000832 396 EKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLP 475 (1263)
Q Consensus 396 ~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP 475 (1263)
..++.|+.|.||.+|+.. |+..+..-+.. .+.+..+.+|+...||..++..|..+-... .+.+
T Consensus 748 ~~~l~D~~~~VR~~aa~a----L~~~~~~~~~~------~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~-------~~~~ 810 (897)
T PRK13800 748 AGAATDENREVRIAVAKG----LATLGAGGAPA------GDAVRALTGDPDPLVRAAALAALAELGCPP-------DDVA 810 (897)
T ss_pred HHHhcCCCHHHHHHHHHH----HHHhccccchh------HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-------hhHH
Confidence 456777777777777774 34333321111 123335566666778888777777664321 1223
Q ss_pred hhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhcCchHHHHHHHHHhcc
Q 000832 476 RLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALANDQSQVAQKITRLLMP 537 (1263)
Q Consensus 476 ~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~Ds~~V~k~IvkLLip 537 (1263)
.+...+.|.+|.||.+++..|..+... -.++.|+..|.+++..||+..++-|-.
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l~~~--------~a~~~L~~~L~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGAAAD--------VAVPALVEALTDPHLDVRKAAVLALTR 864 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhcccc--------chHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 455567788888888888887765421 123666667766677888888877765
No 7
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.89 E-value=0.0002 Score=75.04 Aligned_cols=149 Identities=23% Similarity=0.155 Sum_probs=107.5
Q ss_pred HHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCC
Q 000832 347 PVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIP 426 (1263)
Q Consensus 347 PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP 426 (1263)
+.+-..++..+..|-.+||.++..++...... .+..+...+..|.+.+.|....||.+|.. .|..+|+..+
T Consensus 56 ~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~-----~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~----~L~~i~~~~~ 126 (228)
T PF12348_consen 56 DAIIKQLSDLRSKVSKTACQLLSDLARQLGSH-----FEPYADILLPPLLKKLGDSKKFIREAANN----ALDAIIESCS 126 (228)
T ss_dssp HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG-----GHHHHHHHHHHHHHGGG---HHHHHHHHH----HHHHHHTTS-
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh-----HHHHHHHHHHHHHHHHccccHHHHHHHHH----HHHHHHHHCC
Confidence 44445666678899999999999999887664 35667777888899999999999999988 5888999888
Q ss_pred hhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCC--c-----hHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHh
Q 000832 427 SATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPL--S-----HEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLL 499 (1263)
Q Consensus 427 ~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~--S-----he~Lk~LLP~LksLI~DkSWRVRyAfADLLleL 499 (1263)
....++..++....++.+..||..+.+.+..++.... . +..++.+.|.+..++.|.+..||.++-..|..+
T Consensus 127 --~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 127 --YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp --H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 1223346677778899999999999999999987665 1 223567999999999999999999999999988
Q ss_pred hcccCCc
Q 000832 500 RDIRTFQ 506 (1263)
Q Consensus 500 k~irgiK 506 (1263)
..+.+.+
T Consensus 205 ~~~~~~~ 211 (228)
T PF12348_consen 205 YSHFPER 211 (228)
T ss_dssp HHHH-HH
T ss_pred HHHCCHh
Confidence 7665544
No 8
>PRK09687 putative lyase; Provisional
Probab=97.86 E-value=0.00023 Score=79.15 Aligned_cols=179 Identities=18% Similarity=0.132 Sum_probs=120.0
Q ss_pred HHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhh-cCCCChHHHHHHHhhhhHHHHHHHhhC
Q 000832 347 PVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKL-LTDDCPDVRVVAVEGCCRILHLFWELI 425 (1263)
Q Consensus 347 PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~L-L~DDtPMVRRAAA~gVcriLskfWEiI 425 (1263)
|.+.++++.++..+|..|+..+..+= +++.. ..+.+..|..+ +.|+.|.||++|+.. |+.+-.--
T Consensus 57 ~~l~~ll~~~d~~vR~~A~~aLg~lg---~~~~~-------~~~a~~~L~~l~~~D~d~~VR~~A~~a----LG~~~~~~ 122 (280)
T PRK09687 57 RLAIELCSSKNPIERDIGADILSQLG---MAKRC-------QDNVFNILNNLALEDKSACVRASAINA----TGHRCKKN 122 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC---CCccc-------hHHHHHHHHHHHhcCCCHHHHHHHHHH----Hhcccccc
Confidence 44566889999999999998887641 12110 12334555655 899999999999985 55432111
Q ss_pred ChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCC
Q 000832 426 PSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTF 505 (1263)
Q Consensus 426 P~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgi 505 (1263)
+. .... +......+..|+...||..++.+|..+-. ...+|.|..++.|++|.||+.++.-|..+.
T Consensus 123 ~~-~~~~-a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~----- 187 (280)
T PRK09687 123 PL-YSPK-IVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAIPLLINLLKDPNGDVRNWAAFALNSNK----- 187 (280)
T ss_pred cc-cchH-HHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-----
Confidence 10 0111 22234456778888999999999965421 235677778888999999999999988872
Q ss_pred ceeeecChHHHHHHHhcCchHHHHHHHHHhcccCCCCCCChHHHhHHHHHHHhcCh
Q 000832 506 QFNKVVGLDILLSALANDQSQVAQKITRLLMPSYFPLKVNIKEACSRCVTIVKRSP 561 (1263)
Q Consensus 506 KF~~VV~~D~LLaRLa~Ds~~V~k~IvkLLipSfFP~k~s~~E~~~RCi~Lik~nP 561 (1263)
+..-=-.+.|+..|.+++..||...+.-|-.. ....++...+..++...
T Consensus 188 -~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~------~~~~av~~Li~~L~~~~ 236 (280)
T PRK09687 188 -YDNPDIREAFVAMLQDKNEEIRIEAIIGLALR------KDKRVLSVLIKELKKGT 236 (280)
T ss_pred -CCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc------CChhHHHHHHHHHcCCc
Confidence 11111235577788777789999999888552 23467788888877655
No 9
>PTZ00429 beta-adaptin; Provisional
Probab=97.77 E-value=0.14 Score=64.65 Aligned_cols=143 Identities=15% Similarity=0.076 Sum_probs=96.6
Q ss_pred HHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHH
Q 000832 342 FNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLF 421 (1263)
Q Consensus 342 ~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskf 421 (1263)
.-+-.+-+.+-++.+|..+|..|.-.+..+ ..+ ..+......+.+.+.|..|.||++||.++.++....
T Consensus 103 alLaINtl~KDl~d~Np~IRaLALRtLs~I---r~~--------~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 103 ALLAVNTFLQDTTNSSPVVRALAVRTMMCI---RVS--------SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHcC---CcH--------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC
Confidence 345667788999999999999999877653 112 234444566799999999999999999876665544
Q ss_pred HhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCC-CchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHh
Q 000832 422 WELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNP-LSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLL 499 (1263)
Q Consensus 422 WEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~-~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleL 499 (1263)
-+.++..... +.+.++..|....|...++-.+..+.+.. ..-...+..+..+.+.+.+-++--+..+.+.|...
T Consensus 172 pelv~~~~~~----~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 172 MQLFYQQDFK----KDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred cccccccchH----HHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 4444333222 23334667888999999999999987542 11122233444455556676777777777777553
No 10
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.067 Score=68.85 Aligned_cols=163 Identities=17% Similarity=0.070 Sum_probs=120.0
Q ss_pred HHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHH
Q 000832 339 KMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRIL 418 (1263)
Q Consensus 339 emL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriL 418 (1263)
+.+.-...|.+.+.+++++|.-|..|..-+..+-.-+. +.+..+|.+.+......+.|++|-||=||+. .+
T Consensus 343 ~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~-----~~m~~~l~~Il~~Vl~~l~DphprVr~AA~n----ai 413 (1075)
T KOG2171|consen 343 KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCS-----DVMIGNLPKILPIVLNGLNDPHPRVRYAALN----AI 413 (1075)
T ss_pred hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH-----HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH----HH
Confidence 55666678889999999999999998888777744442 3467789999999999999999999999988 57
Q ss_pred HHHHhhCChhHHHHHHHHHHHHhcc--CCCchHHHHHHHHHHH--hh-CCCCc--hHHHHhHHH-hhhhhcCCCchHHHH
Q 000832 419 HLFWELIPSATITKIITKIFDDNSH--DLCNEVRLATVNGIIY--LL-GNPLS--HEVLKVLLP-RLGHLMQDNVLSVRL 490 (1263)
Q Consensus 419 skfWEiIP~~~I~slL~~If~~LAk--DsQDSVRlaVVeGLia--LL-kn~~S--he~Lk~LLP-~LksLI~DkSWRVRy 490 (1263)
+.+..-+.+++-+..=..+...|+. |+...+|+.+-.+... .. +++.+ .+++..++. .+.-+.+-.+.+||-
T Consensus 414 gQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e 493 (1075)
T KOG2171|consen 414 GQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQE 493 (1075)
T ss_pred HhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 8777777777666554444434333 5566777766444333 22 33332 555666664 667788899999999
Q ss_pred HHHHHHHHhhcccCCceeee
Q 000832 491 AMADLLLLLRDIRTFQFNKV 510 (1263)
Q Consensus 491 AfADLLleLk~irgiKF~~V 510 (1263)
.++.-+..++..-+.+|..=
T Consensus 494 ~vvtaIasvA~AA~~~F~pY 513 (1075)
T KOG2171|consen 494 QAVTAIASVADAAQEKFIPY 513 (1075)
T ss_pred HHHHHHHHHHHHHhhhhHhH
Confidence 99999999998877776543
No 11
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.58 E-value=0.00043 Score=87.49 Aligned_cols=116 Identities=26% Similarity=0.251 Sum_probs=86.0
Q ss_pred HHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhH
Q 000832 394 LLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVL 473 (1263)
Q Consensus 394 ~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~L 473 (1263)
.|...|.|+.|+||++|++ .|+.++ ++. .+..|.. +.+|+.+.||..++++|..+.+...+.
T Consensus 625 ~L~~~L~D~d~~VR~~Av~----~L~~~~---~~~----~~~~L~~-aL~D~d~~VR~~Aa~aL~~l~~~~~~~------ 686 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVA----VLTETT---PPG----FGPALVA-ALGDGAAAVRRAAAEGLRELVEVLPPA------ 686 (897)
T ss_pred HHHHHhcCCCHHHHHHHHH----HHhhhc---chh----HHHHHHH-HHcCCCHHHHHHHHHHHHHHHhccCch------
Confidence 4577789999999999998 467655 233 2233443 448889999999999999887654332
Q ss_pred HHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhcCchHHHHHHHHHhcc
Q 000832 474 LPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALANDQSQVAQKITRLLMP 537 (1263)
Q Consensus 474 LP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~Ds~~V~k~IvkLLip 537 (1263)
+.+...+.|.+++||.++++.|..+... +..-|+..|.++++.||...++-|-.
T Consensus 687 -~~L~~~L~~~d~~VR~~A~~aL~~~~~~---------~~~~l~~~L~D~d~~VR~~Av~aL~~ 740 (897)
T PRK13800 687 -PALRDHLGSPDPVVRAAALDVLRALRAG---------DAALFAAALGDPDHRVRIEAVRALVS 740 (897)
T ss_pred -HHHHHHhcCCCHHHHHHHHHHHHhhccC---------CHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 3455567789999999999999887521 13456777777778999999998875
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.45 E-value=0.0089 Score=69.56 Aligned_cols=255 Identities=16% Similarity=0.180 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHhhccccccCccchhHHHHHhcCCHHHH-----HHHHHHHHhhhccCcHHHHHHHhHHHHhhhcccchh
Q 000832 218 SIEDLKLLLIRCVISPLYLKTEDGRKFLAFLFGLSKPML-----KDVLAMIKSQISFERKSMLEAYGDVLYRAWKGVEEG 292 (1263)
Q Consensus 218 S~~slk~LLLrc~~sP~FlkseEGrrFLAflFgl~~~Li-----k~ih~tIKnQLp~~~kS~le~YGEIyFrAWK~A~gd 292 (1263)
-.+.+-+.+.+++.+|.-+---..---+..++...++.+ ..+...++.+=|....+.+..+.+| +.....
T Consensus 111 ~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-----~~~~~~ 185 (526)
T PF01602_consen 111 MAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-----KCNDDS 185 (526)
T ss_dssp HHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-----HCTHHH
T ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-----ccCcch
Confidence 346666666777766544332223334445554455444 3334444333343334444444444 332222
Q ss_pred hHHHHHHhHHHHHHHHhhccCCHHHHHHHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhc
Q 000832 293 FREDVESGFLQVLIEGAIHASSRAFAASIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLF 372 (1263)
Q Consensus 293 ~~eeIE~~cIQdLm~~AIha~s~~lAaklR~VLs~FHsqK~~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AF 372 (1263)
.. .+=..+++.+.+. +..++|+.-.++-++|..+.... ..-..- ..+.+.+...++..+..|+..|+.++....
T Consensus 186 ~~-~~~~~~~~~L~~~-l~~~~~~~q~~il~~l~~~~~~~--~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 186 YK-SLIPKLIRILCQL-LSDPDPWLQIKILRLLRRYAPME--PEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp HT-THHHHHHHHHHHH-HTCCSHHHHHHHHHHHTTSTSSS--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hh-hhHHHHHHHhhhc-ccccchHHHHHHHHHHHhcccCC--hhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 11 1111223322222 25567888777777776544322 111100 344455555555888999999999999664
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHH
Q 000832 373 PLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLA 452 (1263)
Q Consensus 373 Plvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRla 452 (1263)
|.. ..++.....|.+++.++.|.||-.|...+..+...+ ++. +. ....++..+..|+-.+||..
T Consensus 260 ~~~----------~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~----~~~-v~-~~~~~~~~l~~~~d~~Ir~~ 323 (526)
T PF01602_consen 260 PSP----------ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN----PPA-VF-NQSLILFFLLYDDDPSIRKK 323 (526)
T ss_dssp SSH----------HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC----HHH-HG-THHHHHHHHHCSSSHHHHHH
T ss_pred cch----------HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc----chh-hh-hhhhhhheecCCCChhHHHH
Confidence 431 245666777899999999999999998765555544 222 22 22233445556777889999
Q ss_pred HHHHHHHhhCCCCchHHHHhHHHhhhhhcCCC-chHHHHHHHHHHHHhhccc
Q 000832 453 TVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDN-VLSVRLAMADLLLLLRDIR 503 (1263)
Q Consensus 453 VVeGLiaLLkn~~She~Lk~LLP~LksLI~Dk-SWRVRyAfADLLleLk~ir 503 (1263)
+++.+..++.. ...+.+++.+.+.+.+. ...+|..++..+..++...
T Consensus 324 ~l~lL~~l~~~----~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 324 ALDLLYKLANE----SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp HHHHHHHH--H----HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccc----cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 99999998874 45555666666666555 5569999999988877554
No 13
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.38 E-value=0.074 Score=63.86 Aligned_cols=328 Identities=20% Similarity=0.256 Sum_probs=193.6
Q ss_pred HHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHH
Q 000832 339 KMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRIL 418 (1263)
Q Consensus 339 emL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriL 418 (1263)
..+.++..|++...++..+-.-=.-+|.++..++.-.+++. .+.+.-..+...+..+.|.||+-|+..++++.
T Consensus 33 ~~l~~~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~-------l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~ 105 (503)
T PF10508_consen 33 PFLERLPEPVLFDCLNTSNREQVELICDILKRLLSALSPDS-------LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIA 105 (503)
T ss_pred hHHHhchHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHH-------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 34667777778887877665544555667777777776642 23333456689999999999999998766655
Q ss_pred HHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHH-H-hHHHhhhhhcCCCchHHHHHHHHHH
Q 000832 419 HLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVL-K-VLLPRLGHLMQDNVLSVRLAMADLL 496 (1263)
Q Consensus 419 skfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~L-k-~LLP~LksLI~DkSWRVRyAfADLL 496 (1263)
..- +..-.-.....+.+.+-.+..|...+|--.+.+.+..+++.+..-+.+ . .+++.+..++.-.+.-||+-+.+++
T Consensus 106 ~~~-~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~ 184 (503)
T PF10508_consen 106 RHS-EGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELL 184 (503)
T ss_pred cCC-HHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHH
Confidence 311 110011111223455555668888999999999999999875443322 1 2478888888777889999999999
Q ss_pred HHhhcccCCceeeecC---hHHHHHHHhcCchHHHHHHHHHhcccC-CCCCCCh---HHHhHHHHHHH---hcCh-----
Q 000832 497 LLLRDIRTFQFNKVVG---LDILLSALANDQSQVAQKITRLLMPSY-FPLKVNI---KEACSRCVTIV---KRSP----- 561 (1263)
Q Consensus 497 leLk~irgiKF~~VV~---~D~LLaRLa~Ds~~V~k~IvkLLipSf-FP~k~s~---~E~~~RCi~Li---k~nP----- 561 (1263)
..++++-..-+..++. ++.++..|..|..-|+..+.++|-.-= .|.+..- .....+.+.++ ..+|
T Consensus 185 v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~ 264 (503)
T PF10508_consen 185 VEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSL 264 (503)
T ss_pred HHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccch
Confidence 9999888888888875 677788888776555555555554421 1111000 01234444444 3345
Q ss_pred --HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccC-CCCChhHHHHHHHHHHHHHhhhhhhHhHHHHHHhHhhhhhHHH
Q 000832 562 --VAGARFCEFAVSEGAPLESLVELVTVFIRLVLSH-DKLDEDQIEGLLAAVSYLCKDIAREQCYKNALKELFANDKVKS 638 (1263)
Q Consensus 562 --~Aa~~Fy~~a~~~~a~~~~l~~Li~~ll~~~ls~-~k~~~e~~eg~~~a~a~L~~~L~~~~~~k~~l~~l~~g~~l~~ 638 (1263)
-...+|+-.... .++.++.+....++....+- +..|....+.=..+.+.++...-+. ..|... .|++++.
T Consensus 265 ~l~g~~~f~g~la~--~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~----~~L~~~-~~~~~~~ 337 (503)
T PF10508_consen 265 LLPGRMKFFGNLAR--VSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGK----QLLLQK-QGPAMKH 337 (503)
T ss_pred hhhhHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHH----HHHHhh-cchHHHH
Confidence 122255554432 25566666655555544432 3455666677677778777554322 223111 3555444
Q ss_pred HHHhh----cccc------ccchhhhhhccc---CCCchhHHHHHHHhhhhhcCCCChh
Q 000832 639 LFAAA----STGR------ARSSVFEIVSTV---SPDNVVGLLEQCMGLISKCKGLSED 684 (1263)
Q Consensus 639 ll~~a----~t~~------a~sa~~~I~s~~---~~~~~~~~~~~c~~~~~~~~g~~~~ 684 (1263)
.+.++ ..++ +..|+-+|...- +.+++..+.+.-.+.+ ++-|..
T Consensus 338 ~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~---~~~~~~ 393 (503)
T PF10508_consen 338 VLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESL---SGSPLS 393 (503)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHh---cCCchH
Confidence 44444 3332 444555553322 3455666666555554 444444
No 14
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.28 Score=63.47 Aligned_cols=178 Identities=21% Similarity=0.166 Sum_probs=138.3
Q ss_pred HhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHH
Q 000832 343 NLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFW 422 (1263)
Q Consensus 343 rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfW 422 (1263)
.-+.-++..++.-+| .+|..|...+-..+--.. .+..+. .-+-.-..|.||.-|+--+=|.+.++|
T Consensus 4 ~~l~qLl~~l~spDn-~vr~~Ae~~l~~~~~~~~----------~l~~L~---~i~~~~~~p~~Rq~aaVl~Rkl~~~~w 69 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDN-EVRRQAEEALETLAKTEP----------LLPALA---HILATSADPQVRQLAAVLLRKLLTKHW 69 (1075)
T ss_pred hHHHHHHHHhcCCCc-hHHHHHHHHHHHhhcccc----------hHHHHH---HHHhcCCChHHHHHHHHHHHHHHHHHh
Confidence 446677888888888 789999998886543321 122222 223344789999999987888999999
Q ss_pred hhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcc
Q 000832 423 ELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDI 502 (1263)
Q Consensus 423 EiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~i 502 (1263)
..++++.-.++.+.|+..+-+...++||-..=+.+..++.+.... .--.+||.+-+..+++...-|+++.-.|-.+-..
T Consensus 70 ~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~ 148 (1075)
T KOG2171|consen 70 SRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPET 148 (1075)
T ss_pred hcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999987777 5566999999999999999999999999999999
Q ss_pred cCCceee-ecChHHHHH-HHhcCchHHHHHHHHHh
Q 000832 503 RTFQFNK-VVGLDILLS-ALANDQSQVAQKITRLL 535 (1263)
Q Consensus 503 rgiKF~~-VV~~D~LLa-RLa~Ds~~V~k~IvkLL 535 (1263)
+|-.+.. +=.+-.++. .|.+-+.+||-.-++-+
T Consensus 149 ~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~ 183 (1075)
T KOG2171|consen 149 FGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRAL 183 (1075)
T ss_pred hccccchhHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 9998883 322333333 45555556755555544
No 15
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=2 Score=57.39 Aligned_cols=432 Identities=13% Similarity=0.100 Sum_probs=224.2
Q ss_pred hhhhhhhHHHHHHHHHhhhcCCCCCCCccchHHHHHHhhhhcccccCChhHHHHHHHHHHHHh----cCCCccchhhhhh
Q 000832 106 KQKVLEDLQIFSHVAYLCTAHPRKVFSSSDLLPAVQLLHNNLILFESDSVLSFEIASLCESWW----KNDLGGKEMLISQ 181 (1263)
Q Consensus 106 ~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~LL~~a~~LHd~L~~~es~~~L~~aI~~lCE~WW----~~~l~~kE~Lv~q 181 (1263)
+-++++.|.-++... .+...++..+..+++.++-|=.--++=-.+... ..+..+|-.-. --.+|--......
T Consensus 19 ~~ell~rLk~l~~~l---~~~~qd~~~~~~~~pl~~~l~~~~~L~h~d~dv-rllvacCvseilRi~aPeaPy~~~~lkd 94 (1266)
T KOG1525|consen 19 KDELLKRLKKLANCL---ASLDQDNLDLASLLPLADHLIKDFLLKHKDKDV-RLLVACCVSEILRIYAPEAPYTDEQLKD 94 (1266)
T ss_pred HHHHHHHHHHHHHHH---hhcccCchhHHHHHHHHHHHhhHHHhcCCCcCh-hHHHHHHHHHHHHHhCCCCCCcHHHHHH
Confidence 344555555553333 222333455566666665553333322222221 12222332211 2344544445555
Q ss_pred hHHHHHHHhhccC---ccchhH------hhhhhcccccccCCCCCCHHHHHHHHHHHhhccccccCccchhHHHHHhc--
Q 000832 182 FLPFLVSRSLTLK---KKVDVH------RVYSFRDAFALFDFDDNSIEDLKLLLIRCVISPLYLKTEDGRKFLAFLFG-- 250 (1263)
Q Consensus 182 tLp~LL~rSl~~~---k~~dI~------RL~~lReal~llDf~deS~~slk~LLLrc~~sP~FlkseEGrrFLAflFg-- 250 (1263)
.+.|++..=-..+ .+-..+ +|=.+| ..+=|++++.+++-.=+-++|+.++..-++.+.-++--+++
T Consensus 95 If~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k---~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~l 171 (1266)
T KOG1525|consen 95 IFQLILSQFSGLGDVESPYFKRYFYLLETLAKVK---FCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIML 171 (1266)
T ss_pred HHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhH---HHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 5555443211121 222333 444455 23347888899999989999999888777766655222221
Q ss_pred --CCHHHHHHHHHHHHhhhc----cCcHHHHHHHhHHHHhhhcccchhhHHHHHHhHHHHHHHHhhccCCH---HHHHHH
Q 000832 251 --LSKPMLKDVLAMIKSQIS----FERKSMLEAYGDVLYRAWKGVEEGFREDVESGFLQVLIEGAIHASSR---AFAASI 321 (1263)
Q Consensus 251 --l~~~Lik~ih~tIKnQLp----~~~kS~le~YGEIyFrAWK~A~gd~~eeIE~~cIQdLm~~AIha~s~---~lAakl 321 (1263)
-....-.++..+|-++|- ...+. ....++..- ..+...+|.. |+.+++.++-.-.+ .+--++
T Consensus 172 i~e~d~v~~e~L~~ll~~lv~~~~~~~~~-a~~la~~li-------~~~a~~~~~~-i~~f~~~~~~~~~s~~~~~~~~~ 242 (1266)
T KOG1525|consen 172 ITEEDTVQSELLDVLLENLVKPGRDTIKE-ADKLASDLI-------ERCADNLEDT-IANFLNSCLTEYKSRQSSLKIKY 242 (1266)
T ss_pred HHhhccchHHHHHHHHHHhccCCCCccHH-HHHHHHHHH-------HHhhhhhchh-HHHHHHHHHhhccccccchhhHH
Confidence 111111222333333331 11111 111111000 0122233322 44444444422110 000001
Q ss_pred HHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCC
Q 000832 322 RRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTD 401 (1263)
Q Consensus 322 R~VLs~FHsqK~~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~D 401 (1263)
-.++-+ --.+..++.---.|-|.--+++++-.+|.-|++|...+|-.-+.... +....+.+ ++..=+.|
T Consensus 243 he~i~~------L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~--~~~~~~~~---~fl~r~~D 311 (1266)
T KOG1525|consen 243 HELILE------LWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS--ETYDDLWS---AFLGRFND 311 (1266)
T ss_pred HHHHHH------HHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc--ccchHHHH---HHHHHhcc
Confidence 011100 01223333344468888889999999999999999999987654321 12223444 44788899
Q ss_pred CChHHHHHHHhhhhHHHHHHHhhCChhHHHHHH-HHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhh
Q 000832 402 DCPDVRVVAVEGCCRILHLFWELIPSATITKII-TKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHL 480 (1263)
Q Consensus 402 DtPMVRRAAA~gVcriLskfWEiIP~~~I~slL-~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksL 480 (1263)
-++.||-++++...++|-. .+....... ....+....|.-+.||..++-+.+...+.... ....+|-.+..-
T Consensus 312 ~~~~vR~~~v~~~~~~l~~-----~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~--~~~~ll~~~~eR 384 (1266)
T KOG1525|consen 312 ISVEVRMECVESIKQCLLN-----NPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLV--YIPLLLKLVAER 384 (1266)
T ss_pred CChhhhhhHHHHhHHHHhc-----CchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhh--hhHHHHHHHHHH
Confidence 9999999999987766653 223222222 12233344565666776665555554443211 111266677777
Q ss_pred cCCCchHHHHHHHHHHHHhhcc-------cCCceeeecC--hHHHHHHHhcCchHHHHHHHHHhcccCCCCCCChHHHhH
Q 000832 481 MQDNVLSVRLAMADLLLLLRDI-------RTFQFNKVVG--LDILLSALANDQSQVAQKITRLLMPSYFPLKVNIKEACS 551 (1263)
Q Consensus 481 I~DkSWRVRyAfADLLleLk~i-------rgiKF~~VV~--~D~LLaRLa~Ds~~V~k~IvkLLipSfFP~k~s~~E~~~ 551 (1263)
+.|+-|+||.-+...|.++=+. -+--.+..++ ++.||.-+-.-+-.-|.-+=.+|...-||.+.+.++.++
T Consensus 385 ~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk 464 (1266)
T KOG1525|consen 385 LRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMK 464 (1266)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 8899999999999988886652 1222444455 666666553322223322333445556799999999999
Q ss_pred HHHHHH-hcChHHHHHHHHHH
Q 000832 552 RCVTIV-KRSPVAGARFCEFA 571 (1263)
Q Consensus 552 RCi~Li-k~nP~Aa~~Fy~~a 571 (1263)
|-++++ ..+..|-..|-.+.
T Consensus 465 ~l~~~l~~~D~~a~kaf~~i~ 485 (1266)
T KOG1525|consen 465 HLYQLLAGLDLNAHKAFNEIL 485 (1266)
T ss_pred HHHHHHhcccHhhhhHHHHHH
Confidence 998655 45777777776543
No 16
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.97 E-value=0.0017 Score=62.54 Aligned_cols=83 Identities=18% Similarity=0.182 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhCC--CCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHH---HHHHhcCc
Q 000832 450 RLATVNGIIYLLGN--PLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDIL---LSALANDQ 524 (1263)
Q Consensus 450 RlaVVeGLiaLLkn--~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~L---LaRLa~Ds 524 (1263)
|-..+-|+.++.-- ...++.++.++|.+...+.|+.|||||++++.|..+.++..-.+.. .++++ +.++..|+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~--~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP--YFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcCC
Confidence 44455555554321 1257888999999999999999999999999999999887654322 33333 56677776
Q ss_pred -hHHHHHHHHHh
Q 000832 525 -SQVAQKITRLL 535 (1263)
Q Consensus 525 -~~V~k~IvkLL 535 (1263)
++|+ .-+++|
T Consensus 81 d~~Vr-~~a~~L 91 (97)
T PF12755_consen 81 DENVR-SAAELL 91 (97)
T ss_pred chhHH-HHHHHH
Confidence 5774 444544
No 17
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.61 E-value=0.01 Score=53.19 Aligned_cols=85 Identities=21% Similarity=0.165 Sum_probs=55.5
Q ss_pred HHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCC
Q 000832 347 PVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIP 426 (1263)
Q Consensus 347 PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP 426 (1263)
+++..+.+.+++.+|.+|+..+... .. .+. ...|.+++.|+.|+||++|+..+ +.+ .
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~----~~--------~~~---~~~L~~~l~d~~~~vr~~a~~aL----~~i----~ 59 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGEL----GD--------PEA---IPALIELLKDEDPMVRRAAARAL----GRI----G 59 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCC----TH--------HHH---HHHHHHHHTSSSHHHHHHHHHHH----HCC----H
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc----CC--------HhH---HHHHHHHHcCCCHHHHHHHHHHH----HHh----C
Confidence 3444555899999999999998821 11 122 34557888999999999999964 422 1
Q ss_pred hhHHHHHHHHHHHHhccCCCchHHHHHHHHH
Q 000832 427 SATITKIITKIFDDNSHDLCNEVRLATVNGI 457 (1263)
Q Consensus 427 ~~~I~slL~~If~~LAkDsQDSVRlaVVeGL 457 (1263)
. .+.+..+.+.+.+|+...||..++.+|
T Consensus 60 ~---~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 D---PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp H---HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred C---HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 1 223333444454555667898888776
No 18
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.57 E-value=0.035 Score=58.49 Aligned_cols=189 Identities=16% Similarity=0.157 Sum_probs=98.3
Q ss_pred hcCCchHHHHHHHHHhHhhcCCC-CCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChh---
Q 000832 353 LQAANSNVRQNALHLLLDLFPLE-DPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSA--- 428 (1263)
Q Consensus 353 Lka~NftVR~SA~~LF~~AFPlv-dpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~--- 428 (1263)
-+..+|..|..|..-+-.+.-.- ..+ ..+..-..+++.. ..+.......|.+.+...|..+..+...+..+
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~-~~~~~~~~l~~~~----~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~ 90 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPED-FPPDFVECLRQLL----DAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEP 90 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH-------HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccc-cHHHHHHHHHHhH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 56678899999887666542221 111 1111222233222 33334445566666666666777777776643
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHh-HHHhhhhhcCCCchHHHHHHHHHHHHhhcccC---
Q 000832 429 TITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKV-LLPRLGHLMQDNVLSVRLAMADLLLLLRDIRT--- 504 (1263)
Q Consensus 429 ~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~-LLP~LksLI~DkSWRVRyAfADLLleLk~irg--- 504 (1263)
.+..++.+++.. ..|....||-++.+++..|.++-. .... +++.+....+++|++||..++..+..+-...+
T Consensus 91 ~~~~~l~~Ll~~-~~~~~~~i~~~a~~~L~~i~~~~~---~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~ 166 (228)
T PF12348_consen 91 YADILLPPLLKK-LGDSKKFIREAANNALDAIIESCS---YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS 166 (228)
T ss_dssp HHHHHHHHHHHG-GG---HHHHHHHHHHHHHHHTTS----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHH-HccccHHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence 344444444444 456667899999999999999754 1223 47888889999999999999999999877777
Q ss_pred CceeeecChHHH---HHHHhcCc-hHHHHHHHHHhcccCCCCCCChHHHhHHHH-HHHhcChHHHHHHHH
Q 000832 505 FQFNKVVGLDIL---LSALANDQ-SQVAQKITRLLMPSYFPLKVNIKEACSRCV-TIVKRSPVAGARFCE 569 (1263)
Q Consensus 505 iKF~~VV~~D~L---LaRLa~Ds-~~V~k~IvkLLipSfFP~k~s~~E~~~RCi-~Lik~nP~Aa~~Fy~ 569 (1263)
..+.+...++.+ +.++..|. +.||+. .++|+ .|.+..|..|..++.
T Consensus 167 ~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~-------------------Ar~~~~~l~~~~~~~a~~~~~ 217 (228)
T PF12348_consen 167 SVLQKSAFLKQLVKALVKLLSDADPEVREA-------------------ARECLWALYSHFPERAESILS 217 (228)
T ss_dssp GGG--HHHHHHHHHHHHHHHTSS-HHHHHH-------------------HHHHHHHHHHHH-HHH-----
T ss_pred hhhcccchHHHHHHHHHHHCCCCCHHHHHH-------------------HHHHHHHHHHHCCHhhccchh
Confidence 334333223333 44444454 456433 33332 445566666766663
No 19
>PTZ00429 beta-adaptin; Provisional
Probab=96.53 E-value=2.3 Score=54.27 Aligned_cols=211 Identities=16% Similarity=0.076 Sum_probs=131.7
Q ss_pred HHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHH
Q 000832 342 FNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLF 421 (1263)
Q Consensus 342 ~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskf 421 (1263)
..+|.-++. ..+..+..+|. -+.|+...|....|+. ..-....|.+=|.|+.|+||--|..-+|.
T Consensus 67 S~LF~dVvk-~~~S~d~elKK-LvYLYL~~ya~~~pel--------alLaINtl~KDl~d~Np~IRaLALRtLs~----- 131 (746)
T PTZ00429 67 SYLFVDVVK-LAPSTDLELKK-LVYLYVLSTARLQPEK--------ALLAVNTFLQDTTNSSPVVRALAVRTMMC----- 131 (746)
T ss_pred hHHHHHHHH-HhCCCCHHHHH-HHHHHHHHHcccChHH--------HHHHHHHHHHHcCCCCHHHHHHHHHHHHc-----
Confidence 345555554 77888888887 4566666676655542 11223444888999999999999986543
Q ss_pred HhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhc
Q 000832 422 WELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRD 501 (1263)
Q Consensus 422 WEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~ 501 (1263)
|....+.+.+..-+.+...|..+-||-.++-|+..+.+.....-.-..+++.+..++.|++.-|..+++..|.++..
T Consensus 132 ---Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 132 ---IRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred ---CCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 33344555555666677789999999999999999876433221123477889999999999999999999999987
Q ss_pred ccCCceeee-cChHHHHHHHhcCchHHHHHHHHHhcccCCCCCCCh-HHHhHHHHHHHh-cCh----HHHHHHHHHH
Q 000832 502 IRTFQFNKV-VGLDILLSALANDQSQVAQKITRLLMPSYFPLKVNI-KEACSRCVTIVK-RSP----VAGARFCEFA 571 (1263)
Q Consensus 502 irgiKF~~V-V~~D~LLaRLa~Ds~~V~k~IvkLLipSfFP~k~s~-~E~~~RCi~Lik-~nP----~Aa~~Fy~~a 571 (1263)
.....|.-. --+..|+..+-.=++--.-.|-++|. .|-|..... ..-++|....++ .|| .|++.|+.+.
T Consensus 209 ~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~-~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 209 YGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLA-AQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred hCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 654322110 01233455553222222225566663 466765332 234455554443 555 4555555544
No 20
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.47 E-value=0.013 Score=52.46 Aligned_cols=82 Identities=28% Similarity=0.213 Sum_probs=55.6
Q ss_pred Hhhhc-CCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhH
Q 000832 395 LEKLL-TDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVL 473 (1263)
Q Consensus 395 L~~LL-~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~L 473 (1263)
|.+.+ .|+.|.||..|+.. |+.+ ..+. . .+.+..+.+|+.+.||..++.++..+- -...
T Consensus 4 L~~~l~~~~~~~vr~~a~~~----L~~~----~~~~---~-~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~ 63 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARA----LGEL----GDPE---A-IPALIELLKDEDPMVRRAAARALGRIG--------DPEA 63 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHH----HHCC----THHH---H-HHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHHT
T ss_pred HHHHHhcCCCHHHHHHHHHH----HHHc----CCHh---H-HHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHHH
Confidence 34545 89999999999984 5532 2222 2 333334448888999999999998762 2346
Q ss_pred HHhhhhhcC-CCchHHHHHHHHHH
Q 000832 474 LPRLGHLMQ-DNVLSVRLAMADLL 496 (1263)
Q Consensus 474 LP~LksLI~-DkSWRVRyAfADLL 496 (1263)
+|.+..++. |+++.||.+++.-|
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhc
Confidence 677766554 56788899988765
No 21
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=0.066 Score=66.34 Aligned_cols=229 Identities=23% Similarity=0.244 Sum_probs=139.7
Q ss_pred hhHHHHHHhHHHHHHHHhhccCCHHHHHHHHHHHhhHhhc--CCCcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhH
Q 000832 292 GFREDVESGFLQVLIEGAIHASSRAFAASIRRVLGGFVNQ--RTTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLL 369 (1263)
Q Consensus 292 d~~eeIE~~cIQdLm~~AIha~s~~lAaklR~VLs~FHsq--K~~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~ 369 (1263)
.-.+++++.++..+=.-..-.-+++...++-.++..|... ..+++.| +...+.--+-|...+..-+||.+.|.|++
T Consensus 33 ~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~D--lV~~~f~hlLRg~Eskdk~VRfrvlqila 110 (892)
T KOG2025|consen 33 LTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEED--LVAGTFYHLLRGTESKDKKVRFRVLQILA 110 (892)
T ss_pred hhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhh--HHHHHHHHHHhcccCcchhHHHHHHHHHH
Confidence 3455666666655433333333456778888888888875 3344433 55555555668888888899999999999
Q ss_pred hhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHh-ccCCCch
Q 000832 370 DLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDN-SHDLCNE 448 (1263)
Q Consensus 370 ~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~L-AkDsQDS 448 (1263)
.+-.-... . =+...+++-..|..=+.|-.|.||+.|+.. |+.|=+ .|.+.--. +..++..+ -.|.++.
T Consensus 111 ~l~d~~~e-i----dd~vfn~l~e~l~~Rl~Drep~VRiqAv~a----LsrlQ~-d~~dee~~-v~n~l~~liqnDpS~E 179 (892)
T KOG2025|consen 111 LLSDENAE-I----DDDVFNKLNEKLLIRLKDREPNVRIQAVLA----LSRLQG-DPKDEECP-VVNLLKDLIQNDPSDE 179 (892)
T ss_pred HHhccccc-c----CHHHHHHHHHHHHHHHhccCchHHHHHHHH----HHHHhc-CCCCCccc-HHHHHHHHHhcCCcHH
Confidence 77552111 1 122344444455666889999999999995 455442 33211111 22233333 3577999
Q ss_pred HHHHHHHHHHH-------hhCCCCc------hHHHHhHHHhh--------------hhhcCCCchHHHHHHHHHHHHhhc
Q 000832 449 VRLATVNGIIY-------LLGNPLS------HEVLKVLLPRL--------------GHLMQDNVLSVRLAMADLLLLLRD 501 (1263)
Q Consensus 449 VRlaVVeGLia-------LLkn~~S------he~Lk~LLP~L--------------ksLI~DkSWRVRyAfADLLleLk~ 501 (1263)
||-+++-++.. |++.-.. .=....+||.+ .-.++|++..||-|++|+++.=
T Consensus 180 VRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~-- 257 (892)
T KOG2025|consen 180 VRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSG-- 257 (892)
T ss_pred HHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH--
Confidence 99999775532 2221111 11233466644 3357899999999999986540
Q ss_pred ccCCceeeecChHHHHHHHhcCch-HHHHHHHHHhccc
Q 000832 502 IRTFQFNKVVGLDILLSALANDQS-QVAQKITRLLMPS 538 (1263)
Q Consensus 502 irgiKF~~VV~~D~LLaRLa~Ds~-~V~k~IvkLLipS 538 (1263)
=..|.+= .+-++|.||...+. .|+.+..+-|+.-
T Consensus 258 --Wl~~~dg-ni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 258 --WLRFSDG-NILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred --Hhhhccc-cHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 1223332 45677888888764 8888888888773
No 22
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.37 E-value=0.0037 Score=48.25 Aligned_cols=30 Identities=37% Similarity=0.391 Sum_probs=26.5
Q ss_pred HHHhhhhhcCCCchHHHHHHHHHHHHhhcc
Q 000832 473 LLPRLGHLMQDNVLSVRLAMADLLLLLRDI 502 (1263)
Q Consensus 473 LLP~LksLI~DkSWRVRyAfADLLleLk~i 502 (1263)
++|.+.++++|++|+||.+++..|..+.++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999998764
No 23
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.34 E-value=0.012 Score=73.79 Aligned_cols=178 Identities=21% Similarity=0.170 Sum_probs=141.6
Q ss_pred HHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHH
Q 000832 340 MLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILH 419 (1263)
Q Consensus 340 mL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLs 419 (1263)
.....+.|.+....+...|.+|......|.++|+.++++.+ +.++...| ..+++|..-.||.++++. ..
T Consensus 312 d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~----~~~~~~~~---~~l~~~~~~e~r~a~a~~----~~ 380 (759)
T KOG0211|consen 312 DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSAT----RTQLVPPV---SNLLKDEEWEVRYAIAKK----VQ 380 (759)
T ss_pred hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccC----cccchhhH---HHHhcchhhhhhHHhhcc----hH
Confidence 55677788888899999999999999999999999999664 46666666 999999999999999986 36
Q ss_pred HHHhhCC----hhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHH
Q 000832 420 LFWELIP----SATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADL 495 (1263)
Q Consensus 420 kfWEiIP----~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADL 495 (1263)
++-...+ ++.+.+.+.+.++.+..|..-.||.+..-+...+.........+.+++|.....++|....||.+..+.
T Consensus 381 ~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ 460 (759)
T KOG0211|consen 381 KLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDK 460 (759)
T ss_pred HHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHH
Confidence 6666666 667777778999999999999999999888888877777788889999999999999999999999976
Q ss_pred HHHhhcccCCceeeecChHHH-------HHHHhcCc-hHHHHHHHH
Q 000832 496 LLLLRDIRTFQFNKVVGLDIL-------LSALANDQ-SQVAQKITR 533 (1263)
Q Consensus 496 LleLk~irgiKF~~VV~~D~L-------LaRLa~Ds-~~V~k~Ivk 533 (1263)
+..+.. -.++++++.+ +..++.|. -+|+.+|.+
T Consensus 461 ls~~~~-----v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~ 501 (759)
T KOG0211|consen 461 LSLLEE-----VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILE 501 (759)
T ss_pred HHHHHh-----ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHH
Confidence 654442 2344444333 55666664 366665554
No 24
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.19 Score=62.12 Aligned_cols=280 Identities=18% Similarity=0.183 Sum_probs=150.0
Q ss_pred HHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhH
Q 000832 394 LLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVL 473 (1263)
Q Consensus 394 ~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~L 473 (1263)
++..-+.|+-.+||+||+..+|+.-- .- +.....-+.-++ ++-+|+-..||+.++..|..|..+.. +-+..
T Consensus 377 A~VhGlEDEf~EVR~AAV~Sl~~La~----ss-P~FA~~aldfLv-DMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeq 447 (823)
T KOG2259|consen 377 ALVHGLEDEFYEVRRAAVASLCSLAT----SS-PGFAVRALDFLV-DMFNDEIEVVRLKAIFALTMISVHLA---IREEQ 447 (823)
T ss_pred eeeeechHHHHHHHHHHHHHHHHHHc----CC-CCcHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHHhe---ecHHH
Confidence 34666899999999999998765332 23 344444444333 44588889999999999999998733 33446
Q ss_pred HHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhcC-----------------ch-HHHHHHHHHh
Q 000832 474 LPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALAND-----------------QS-QVAQKITRLL 535 (1263)
Q Consensus 474 LP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~D-----------------s~-~V~k~IvkLL 535 (1263)
|+.+...+.|.|..||.++-++|...+ ....+-.+. -++++++.|+.= ++ .|-.-..++|
T Consensus 448 l~~il~~L~D~s~dvRe~l~elL~~~~-~~d~~~i~m-~v~~lL~~L~kyPqDrd~i~~cm~~iGqnH~~lv~s~m~rfl 525 (823)
T KOG2259|consen 448 LRQILESLEDRSVDVREALRELLKNAR-VSDLECIDM-CVAHLLKNLGKYPQDRDEILRCMGRIGQNHRRLVLSNMGRFL 525 (823)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CCcHHHHHH-HHHHHHHHhhhCCCCcHHHHHHHHHHhccChhhHHHHHHHHH
Confidence 777778889999999999888754322 111111111 123344433331 11 2434444555
Q ss_pred -cccCCCCC-CChHHHhHHHH-HH-----------HhcChHHHHHHHHHHhhcCCChH------HHHHHHHHHHHhhccC
Q 000832 536 -MPSYFPLK-VNIKEACSRCV-TI-----------VKRSPVAGARFCEFAVSEGAPLE------SLVELVTVFIRLVLSH 595 (1263)
Q Consensus 536 -ipSfFP~k-~s~~E~~~RCi-~L-----------ik~nP~Aa~~Fy~~a~~~~a~~~------~l~~Li~~ll~~~ls~ 595 (1263)
...+|-.. .+.+++-+=|. .| +..-|.|--+||.|+ ..++++ .-+..+..-.--+.+.
T Consensus 526 ~kh~~f~t~e~s~ed~~y~akLilv~nAa~~~p~ii~s~Pea~hrhla~L--r~sspnLv~~~pi~~ld~~~q~~ri~ss 603 (823)
T KOG2259|consen 526 EKHTSFATIEPSLEDGFYIAKLILVRNAARADPGIIVSRPEAHHRHLAIL--RCSSPNLVGDGPIFFLDILCQFLRIKSS 603 (823)
T ss_pred HhcccccccCccccChhhhhhhhhhhhhhhhCCCeeeechHHHHHHHHHH--hccCCCCCCccchHHHHHHHHHhhhhcc
Confidence 44455433 33444444442 22 222345555455444 333321 2222222111122233
Q ss_pred CCCChhHHHHHHH-----------HHHHHHhhhhhhHhHHH------HHHhHhhhhhHHHHHHhhccc-----cccchhh
Q 000832 596 DKLDEDQIEGLLA-----------AVSYLCKDIAREQCYKN------ALKELFANDKVKSLFAAASTG-----RARSSVF 653 (1263)
Q Consensus 596 ~k~~~e~~eg~~~-----------a~a~L~~~L~~~~~~k~------~l~~l~~g~~l~~ll~~a~t~-----~a~sa~~ 653 (1263)
+..-+++.|.+.- ...||.-+... +.|+. ..--++.| .+.+...+.+. ..+++++
T Consensus 604 d~~te~~ae~vfm~~yr~~~~~tat~~~L~~g~~~-~~~~k~~~~i~~~~~~~~g--t~~~~~~l~~~~a~ve~iq~t~~ 680 (823)
T KOG2259|consen 604 DGETERQAEKVFMRMYREDDPRTATIYYLYEGMVE-LRCKKKDDMIQRAPFLFAG--TGFDASVLCNPRAMVEYIQSTDF 680 (823)
T ss_pred cccchhhHHHHHHHHHhhccchhhhhHHHhccchh-HhhhhhhHHHHhhhhhhhh--hHHHHHHHhchHHHHHHHhhhhh
Confidence 3322333332222 22333333322 33333 22222322 22333333333 3778889
Q ss_pred hhhcccCCC-chhHHHHHHHhhhhhcCCCChhhhhHH
Q 000832 654 EIVSTVSPD-NVVGLLEQCMGLISKCKGLSEDEERQA 689 (1263)
Q Consensus 654 ~I~s~~~~~-~~~~~~~~c~~~~~~~~g~~~~~~~q~ 689 (1263)
.+...++-+ .++...+.|..+=.+=+|+.-+...|.
T Consensus 681 ~~~~~v~vkell~q~vs~c~~~ph~fsgl~~~~~~q~ 717 (823)
T KOG2259|consen 681 GSIRFVRVKELLPQRVSVCRRMPHRFSGLLLEEDIQD 717 (823)
T ss_pred cceeeeeHHHHHHHHHHHHHhccCccCccccccccee
Confidence 999998854 466888899998888888776666554
No 25
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.99 E-value=0.18 Score=52.59 Aligned_cols=140 Identities=19% Similarity=0.212 Sum_probs=93.5
Q ss_pred HHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHH
Q 000832 341 LFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHL 420 (1263)
Q Consensus 341 L~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLsk 420 (1263)
+.+-|.|.+...+..++..||.+|...+.-..-. +..+ .+..+ |..+..++.|+.|+||..|... +..
T Consensus 22 ~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik--~k~~l---~~~~l~~l~D~~~~Ir~~A~~~----~~e 89 (178)
T PF12717_consen 22 LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIK--VKGQL---FSRILKLLVDENPEIRSLARSF----FSE 89 (178)
T ss_pred HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---Ccee--ehhhh---hHHHHHHHcCCCHHHHHHHHHH----HHH
Confidence 4556788888999999999999999988876422 2221 22223 3455788999999999999984 566
Q ss_pred HHhhCChhHHHHHHHHHHHHhccCC--------CchHHHHHHHHHHHhhCC-CCchHHHHhHHHhhhhhcCCCchHHHHH
Q 000832 421 FWELIPSATITKIITKIFDDNSHDL--------CNEVRLATVNGIIYLLGN-PLSHEVLKVLLPRLGHLMQDNVLSVRLA 491 (1263)
Q Consensus 421 fWEiIP~~~I~slL~~If~~LAkDs--------QDSVRlaVVeGLiaLLkn-~~She~Lk~LLP~LksLI~DkSWRVRyA 491 (1263)
++....++.+...+..++..|..-. ...-|...++-+...+++ .......+.+.+++.....+...+|-.-
T Consensus 90 ~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~~~~~~~~~~~~d 169 (178)
T PF12717_consen 90 LLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLNAVVDEDERVLRD 169 (178)
T ss_pred HHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHcccccHHHHHH
Confidence 6666566777778888888877642 234566667766666663 3334455666666665554444444433
Q ss_pred H
Q 000832 492 M 492 (1263)
Q Consensus 492 f 492 (1263)
+
T Consensus 170 ~ 170 (178)
T PF12717_consen 170 I 170 (178)
T ss_pred H
Confidence 3
No 26
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.91 E-value=2.3 Score=54.20 Aligned_cols=126 Identities=19% Similarity=0.201 Sum_probs=92.5
Q ss_pred HHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhc
Q 000832 320 SIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLL 399 (1263)
Q Consensus 320 klR~VLs~FHsqK~~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL 399 (1263)
.+++++..+...= +..++....+..+.+..-++.+|...|..|---+..+ . ..+.+-+.+..+.+++
T Consensus 70 ElKrL~ylYl~~y--ak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-----~------~~el~~~~~~~ik~~l 136 (757)
T COG5096 70 ELKRLLYLYLERY--AKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-----R------VKELLGNIIDPIKKLL 136 (757)
T ss_pred HHHHHHHHHHHHH--hccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-----C------hHHHHHHHHHHHHHHc
Confidence 4455555544431 1223356678889999999999999999998777644 1 1355666778999999
Q ss_pred CCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHH-HHHHHHHhccCCCchHHHHHHHHHHHhhCC
Q 000832 400 TDDCPDVRVVAVEGCCRILHLFWELIPSATITKI-ITKIFDDNSHDLCNEVRLATVNGIIYLLGN 463 (1263)
Q Consensus 400 ~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~sl-L~~If~~LAkDsQDSVRlaVVeGLiaLLkn 463 (1263)
.|++|+||+.||-++.++-. +.++...+. +.-+...|+.|..+.|-..++-++..+=..
T Consensus 137 ~d~~ayVRk~Aalav~kly~-----ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 137 TDPHAYVRKTAALAVAKLYR-----LDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cCCcHHHHHHHHHHHHHHHh-----cCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 99999999999997544443 455666666 667888899999999988888888876544
No 27
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.85 E-value=0.11 Score=54.11 Aligned_cols=109 Identities=21% Similarity=0.165 Sum_probs=71.2
Q ss_pred chHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHH-H
Q 000832 357 NSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKII-T 435 (1263)
Q Consensus 357 NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL-~ 435 (1263)
+..+|.||...+.+..-+.+. . .+.-+ ..+...|.|+.|.||+.|..-+.+.+.. +.+ ..+..+ .
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~-~----ve~~~----~~l~~~L~D~~~~VR~~al~~Ls~Li~~--d~i---k~k~~l~~ 66 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN-L----VEPYL----PNLYKCLRDEDPLVRKTALLVLSHLILE--DMI---KVKGQLFS 66 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH-H----HHhHH----HHHHHHHCCCCHHHHHHHHHHHHHHHHc--Cce---eehhhhhH
Confidence 467999999999988777743 2 12333 3446888999999999999855443331 111 122222 3
Q ss_pred HHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhh
Q 000832 436 KIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHL 480 (1263)
Q Consensus 436 ~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksL 480 (1263)
.+.. +..|+.+.||-.+...+..++.....+.....+.+.+.++
T Consensus 67 ~~l~-~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 67 RILK-LLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHH-HHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 3443 4488899999999999999988755455544444444433
No 28
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.77 E-value=0.27 Score=54.80 Aligned_cols=94 Identities=22% Similarity=0.215 Sum_probs=62.0
Q ss_pred HhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHH
Q 000832 343 NLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFW 422 (1263)
Q Consensus 343 rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfW 422 (1263)
..-.+.+.+++..+.+.+|.+|+..+... + ....+..+..+|.|..|.||..|+.. |+
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~------~---------~~~av~~l~~~l~d~~~~vr~~a~~a----Lg--- 99 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGEL------G---------SEEAVPLLRELLSDEDPRVRDAAADA----LG--- 99 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhh------c---------hHHHHHHHHHHhcCCCHHHHHHHHHH----HH---
Confidence 34566777788888999999999773321 1 12234566899999999999999983 44
Q ss_pred hhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhC
Q 000832 423 ELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLG 462 (1263)
Q Consensus 423 EiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLk 462 (1263)
.+..+... .+++..+..|....||..+..++..+-+
T Consensus 100 -~~~~~~a~---~~li~~l~~d~~~~vR~~aa~aL~~~~~ 135 (335)
T COG1413 100 -ELGDPEAV---PPLVELLENDENEGVRAAAARALGKLGD 135 (335)
T ss_pred -ccCChhHH---HHHHHHHHcCCcHhHHHHHHHHHHhcCc
Confidence 22222222 2333444447788899888777766543
No 29
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.75 E-value=1.3 Score=56.93 Aligned_cols=251 Identities=23% Similarity=0.256 Sum_probs=146.9
Q ss_pred CCCCHHHHHHHHHHHhhccccccCccchhHHHHHh-----cCCHHHHHHHHHHHHhhhccCcHHHHHHHhHHHHhhhccc
Q 000832 215 DDNSIEDLKLLLIRCVISPLYLKTEDGRKFLAFLF-----GLSKPMLKDVLAMIKSQISFERKSMLEAYGDVLYRAWKGV 289 (1263)
Q Consensus 215 ~deS~~slk~LLLrc~~sP~FlkseEGrrFLAflF-----gl~~~Lik~ih~tIKnQLp~~~kS~le~YGEIyFrAWK~A 289 (1263)
++-...+++..++.+|.+|. +|=+.--|+.+ |--+.++..|.+-|.+|= .-.-=++..+-|+..++ ..
T Consensus 851 ~~s~~~e~~~~iieaf~sp~----edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqp-k~QyLLLhSlkevi~~~--sv 923 (1233)
T KOG1824|consen 851 DLSPQNELKDTIIEAFNSPS----EDVKSAASYALGSLAVGNLPKYLPFILEQIESQP-KRQYLLLHSLKEVIVSA--SV 923 (1233)
T ss_pred CCCcchhhHHHHHHHcCCCh----HHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcch-HhHHHHHHHHHHHHHHh--cc
Confidence 34566788888888888884 56666666665 445567777776666652 22223345555555443 22
Q ss_pred chhhHHHHHHhHHHHHHHHhhccCCHHHHHHHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhH
Q 000832 290 EEGFREDVESGFLQVLIEGAIHASSRAFAASIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLL 369 (1263)
Q Consensus 290 ~gd~~eeIE~~cIQdLm~~AIha~s~~lAaklR~VLs~FHsqK~~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~ 369 (1263)
+ -++..+|+. .--|+.++=-+.. .. |.|+..-.-.=..-+- +-..|=++-++.++-...|.++..-+.
T Consensus 924 d-~~~~~v~~I-W~lL~k~cE~~ee--gt---R~vvAECLGkL~l~ep-----esLlpkL~~~~~S~a~~~rs~vvsavK 991 (1233)
T KOG1824|consen 924 D-GLKPYVEKI-WALLFKHCECAEE--GT---RNVVAECLGKLVLIEP-----ESLLPKLKLLLRSEASNTRSSVVSAVK 991 (1233)
T ss_pred c-hhhhhHHHH-HHHHHHhcccchh--hh---HHHHHHHhhhHHhCCh-----HHHHHHHHHHhcCCCcchhhhhhheee
Confidence 2 345555542 3344444332221 11 3333221100001111 234566777888888888988877655
Q ss_pred hhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHH--------HHHhhCC----hhHHHHHHHHH
Q 000832 370 DLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILH--------LFWELIP----SATITKIITKI 437 (1263)
Q Consensus 370 ~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLs--------kfWEiIP----~~~I~slL~~I 437 (1263)
|-+.+.- +-.|..+.+||.-+..+++|+.+.|||+|..-+-.... .|-+++| ...+.+.+..-
T Consensus 992 --fsisd~p---~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIre 1066 (1233)
T KOG1824|consen 992 --FSISDQP---QPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIRE 1066 (1233)
T ss_pred --eeecCCC---CccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhh
Confidence 3333321 12578899999999999999999999999874321111 1222222 12222222222
Q ss_pred HH----HhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHH
Q 000832 438 FD----DNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRL 490 (1263)
Q Consensus 438 f~----~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRy 490 (1263)
++ +-.-|+.=.+|-++||++-.+++...+...+.+++..+...+.|. --++.
T Consensus 1067 VeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~Dh-ydiKm 1122 (1233)
T KOG1824|consen 1067 VEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDH-YDIKM 1122 (1233)
T ss_pred hcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchh-hHHHH
Confidence 11 122355557999999999999999888888888888888888877 44443
No 30
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.71 E-value=0.065 Score=49.31 Aligned_cols=104 Identities=18% Similarity=0.043 Sum_probs=74.1
Q ss_pred HHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCCh---hHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCc--h
Q 000832 393 FLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPS---ATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLS--H 467 (1263)
Q Consensus 393 ~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~---~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~S--h 467 (1263)
..+.+++.|+.+.+|..|+.. |..+....|. ..+..-+.+.+-++..|+...||..++.++..|+..... .
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~----l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWA----LSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHH----HHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 445788899999999999985 4544443321 222212234444455667789999999999999987643 2
Q ss_pred HHHH-hHHHhhhhhcCCCchHHHHHHHHHHHHhh
Q 000832 468 EVLK-VLLPRLGHLMQDNVLSVRLAMADLLLLLR 500 (1263)
Q Consensus 468 e~Lk-~LLP~LksLI~DkSWRVRyAfADLLleLk 500 (1263)
...+ .++|.+..+++|.+.+||.+++..|..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2232 38999999999999999999999887765
No 31
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.62 E-value=0.7 Score=56.94 Aligned_cols=150 Identities=20% Similarity=0.270 Sum_probs=91.4
Q ss_pred hHHHHHHhHHHHHHHHhhccC-CHHHHHHHHHHHhhHhhcCC--CcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhH
Q 000832 293 FREDVESGFLQVLIEGAIHAS-SRAFAASIRRVLGGFVNQRT--TPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLL 369 (1263)
Q Consensus 293 ~~eeIE~~cIQdLm~~AIha~-s~~lAaklR~VLs~FHsqK~--~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~ 369 (1263)
..++++..++. +++-.+-+. .+..+.++-++|..|..-+. +++=.+.+...+.- +-|...+..-+||.+.|.+++
T Consensus 39 t~~~f~~~flr-~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h-~lRg~eskdk~VR~r~lqila 116 (885)
T COG5218 39 TAHEFSEEFLR-VVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYH-LLRGTESKDKKVRKRSLQILA 116 (885)
T ss_pred HHHhhHHHHHH-HHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHH-HHhcccCcchhHHHHHHHHHH
Confidence 34566665444 333333222 25678899999999998433 33212222222222 346778888899999999999
Q ss_pred hhcCCCCCccchHHHHHHH-HHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCCh--hHHHHHHHHHHHHhccCCC
Q 000832 370 DLFPLEDPDATKEVKDTLF-DKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPS--ATITKIITKIFDDNSHDLC 446 (1263)
Q Consensus 370 ~AFPlvdpd~~rEe~d~EL-~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~--~~I~slL~~If~~LAkDsQ 446 (1263)
.+-..+.+ +|..| +.+..-|.+=+-|-.|.||+.|+. +|.+|=+.-.. ..+..++. .-+-.|.+
T Consensus 117 ~~~d~v~e------IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~----~L~~~Qe~~~neen~~~n~l~---~~vqnDPS 183 (885)
T COG5218 117 LLSDVVRE------IDEVLANGLLEKLSERLFDREKAVRREAVK----VLCYYQEMELNEENRIVNLLK---DIVQNDPS 183 (885)
T ss_pred HHHHhcch------HHHHHHHHHHHHHHHHHhcchHHHHHHHHH----HHHHHHhccCChHHHHHHHHH---HHHhcCcH
Confidence 88777655 22333 222323344477999999999998 46666655432 33333322 22345779
Q ss_pred chHHHHHHHHH
Q 000832 447 NEVRLATVNGI 457 (1263)
Q Consensus 447 DSVRlaVVeGL 457 (1263)
+.||-+++-.+
T Consensus 184 ~EVRr~allni 194 (885)
T COG5218 184 DEVRRLALLNI 194 (885)
T ss_pred HHHHHHHHHHe
Confidence 99999986543
No 32
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.56 E-value=4.3 Score=49.25 Aligned_cols=154 Identities=18% Similarity=0.141 Sum_probs=103.7
Q ss_pred HHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHH
Q 000832 342 FNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLF 421 (1263)
Q Consensus 342 ~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskf 421 (1263)
..-|.|.+.+.++.++..||..|+..+...--.- ....+.-.+.+ .|..+..++.|+...|-..|+.-+.++.+ +
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~---l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~ 149 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNE---LLPLIIQCLRDPDLSVAKAAIKALKKLAS-H 149 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCcc---HHHHHHHHHcCCcHHHHHHHHHHHHHHhC-C
Confidence 7788999999999999999999999765542211 11111111222 36667999999999999999985433332 1
Q ss_pred HhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCc-hHHHHh--HHHhhhhhcCCCchHHHHHHHHHHHH
Q 000832 422 WELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLS-HEVLKV--LLPRLGHLMQDNVLSVRLAMADLLLL 498 (1263)
Q Consensus 422 WEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~S-he~Lk~--LLP~LksLI~DkSWRVRyAfADLLle 498 (1263)
...+. ......+..-+..+.....+.||+-+++.++.+.+.... .+.... +++.+.+.+.|..-=||.+++++|.+
T Consensus 150 ~~~~~-~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~ 228 (503)
T PF10508_consen 150 PEGLE-QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSE 228 (503)
T ss_pred chhHH-HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 11110 010111133344444445678999999999999865332 333333 89999999999999999999999999
Q ss_pred hhc
Q 000832 499 LRD 501 (1263)
Q Consensus 499 Lk~ 501 (1263)
++.
T Consensus 229 La~ 231 (503)
T PF10508_consen 229 LAE 231 (503)
T ss_pred HHc
Confidence 987
No 33
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.42 E-value=0.41 Score=53.67 Aligned_cols=206 Identities=25% Similarity=0.317 Sum_probs=125.7
Q ss_pred hHHHHHHHHhhccCCHHHHHHHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCcc
Q 000832 300 GFLQVLIEGAIHASSRAFAASIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDA 379 (1263)
Q Consensus 300 ~cIQdLm~~AIha~s~~lAaklR~VLs~FHsqK~~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~ 379 (1263)
.++++++.-+|..+.+.+...=-+-|+-|-- +++.+..-|.|++.+.++.+.-.+|.-|...+.++.-..+.+.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L------ld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCL------LDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH------hChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4688888888877665444333334444333 2445666778888888888899999999998888655554332
Q ss_pred chHHH-------HHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCC--hhHHHHHHHHHHHHhccCCCchHH
Q 000832 380 TKEVK-------DTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIP--SATITKIITKIFDDNSHDLCNEVR 450 (1263)
Q Consensus 380 ~rEe~-------d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP--~~~I~slL~~If~~LAkDsQDSVR 450 (1263)
..... ...+.+. +.+.+.++.|.||.+|++|+|+.+- -..+. +..+..++..-|+--..|.+ |
T Consensus 100 ~~~~~~~~~~~~~~~l~~~---l~~~l~~~~~~~~~~a~EGl~KLlL--~~~i~~~~~vL~~Lll~yF~p~t~~~~---~ 171 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKI---LTKFLDSENPELQAIAVEGLCKLLL--SGRISDPPKVLSRLLLLYFNPSTEDNQ---R 171 (298)
T ss_pred ccchhccCccchHhHHHHH---HHHHHhcCCHHHHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHcCcccCCcH---H
Confidence 21111 2334444 4899999999999999999998654 22232 34555554444443333322 2
Q ss_pred HHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCC--ceeeecChHHHHHHHhcCchHHH
Q 000832 451 LATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTF--QFNKVVGLDILLSALANDQSQVA 528 (1263)
Q Consensus 451 laVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgi--KF~~VV~~D~LLaRLa~Ds~~V~ 528 (1263)
+ ..++...+|..-..-...-+++..+|...|..+.+...- .-+..|+ ..+|.
T Consensus 172 L---------------rQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~-----------~~~v~ 225 (298)
T PF12719_consen 172 L---------------RQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVS-----------PSQVA 225 (298)
T ss_pred H---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCC-----------HHHHH
Confidence 2 234445666665554455677777888777777766553 2222222 23566
Q ss_pred HHHHHHhcccCCCCCCC
Q 000832 529 QKITRLLMPSYFPLKVN 545 (1263)
Q Consensus 529 k~IvkLLipSfFP~k~s 545 (1263)
+-++++.-|+.......
T Consensus 226 ~~lv~lt~~~~~~~~~~ 242 (298)
T PF12719_consen 226 SFLVDLTDPSKLVKESN 242 (298)
T ss_pred HHHHHHCChhhccCccc
Confidence 77777777776655443
No 34
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.28 E-value=2.4 Score=52.51 Aligned_cols=278 Identities=19% Similarity=0.177 Sum_probs=147.5
Q ss_pred CCCCHHHHHHHHHHHhhccccccCccchhHHHHHhcCC-------HHHHHHHHHHHHhhhccCcHHHHHHHh-HHHHhhh
Q 000832 215 DDNSIEDLKLLLIRCVISPLYLKTEDGRKFLAFLFGLS-------KPMLKDVLAMIKSQISFERKSMLEAYG-DVLYRAW 286 (1263)
Q Consensus 215 ~deS~~slk~LLLrc~~sP~FlkseEGrrFLAflFgl~-------~~Lik~ih~tIKnQLp~~~kS~le~YG-EIyFrAW 286 (1263)
+..+.+....++.+++..+.+-.-..+-.=+|.+++-. ..|+..++..|++-=+..++. ....+ +.++..-
T Consensus 128 ~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re-~~~~a~~~~~~~L 206 (569)
T KOG1242|consen 128 KGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNRE-AALLAFEAAQGNL 206 (569)
T ss_pred hccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHH-HHHHHHHHHHHhc
Confidence 45667888888999998877765556666666665222 134555665555544444442 11111 1111111
Q ss_pred cccchhhHHHHHHhHHHHHHHHhhccCCHHHHHHHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhcCCchHHHHHHHH
Q 000832 287 KGVEEGFREDVESGFLQVLIEGAIHASSRAFAASIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALH 366 (1263)
Q Consensus 287 K~A~gd~~eeIE~~cIQdLm~~AIha~s~~lAaklR~VLs~FHsqK~~kgVdemL~rLY~PILwRLLka~NftVR~SA~~ 366 (1263)
-..-.+..-.+=...+.-+-...=.- +.......+.+++.|--. +|...+ -|+|--+... .|....+|..
T Consensus 207 g~~~EPyiv~~lp~il~~~~d~~~~V-r~Aa~~a~kai~~~~~~~----aVK~ll----psll~~l~~~-kWrtK~asle 276 (569)
T KOG1242|consen 207 GPPFEPYIVPILPSILTNFGDKINKV-REAAVEAAKAIMRCLSAY----AVKLLL----PSLLGSLLEA-KWRTKMASLE 276 (569)
T ss_pred CCCCCchHHhhHHHHHHHhhccchhh-hHHHHHHHHHHHHhcCcc----hhhHhh----hhhHHHHHHH-hhhhHHHHHH
Confidence 11111111111111111110000000 011122333344333222 222222 2333344444 5677777777
Q ss_pred HhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhcc---
Q 000832 367 LLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSH--- 443 (1263)
Q Consensus 367 LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAk--- 443 (1263)
++...-- +.|.. ....|......+.+-+-|-.|+||++|.+. +-+|-+.+....|..++..+++.++.
T Consensus 277 llg~m~~-~ap~q----Ls~~lp~iiP~lsevl~DT~~evr~a~~~~----l~~~~svidN~dI~~~ip~Lld~l~dp~~ 347 (569)
T KOG1242|consen 277 LLGAMAD-CAPKQ----LSLCLPDLIPVLSEVLWDTKPEVRKAGIET----LLKFGSVIDNPDIQKIIPTLLDALADPSC 347 (569)
T ss_pred HHHHHHH-hchHH----HHHHHhHhhHHHHHHHccCCHHHHHHHHHH----HHHHHHhhccHHHHHHHHHHHHHhcCccc
Confidence 7763322 22322 356677778888999999999999999984 56666666555555555444444432
Q ss_pred -----------------------------------CCCch-HHHHH--HHHHHHhhCCCCc-hHHHHhHHHhhhhhcCCC
Q 000832 444 -----------------------------------DLCNE-VRLAT--VNGIIYLLGNPLS-HEVLKVLLPRLGHLMQDN 484 (1263)
Q Consensus 444 -----------------------------------DsQDS-VRlaV--VeGLiaLLkn~~S-he~Lk~LLP~LksLI~Dk 484 (1263)
+.+.+ =|.++ ++.++.+.+.+.. .+.+..|+|.++..+.|.
T Consensus 348 ~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~ 427 (569)
T KOG1242|consen 348 YTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA 427 (569)
T ss_pred chHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC
Confidence 22211 23222 4455555543333 456677999999999999
Q ss_pred chHHHHHHHHHHHHhhcccC-CceeeecC
Q 000832 485 VLSVRLAMADLLLLLRDIRT-FQFNKVVG 512 (1263)
Q Consensus 485 SWRVRyAfADLLleLk~irg-iKF~~VV~ 512 (1263)
-+.||+-.+.-|..+.+-+| .+|-+++|
T Consensus 428 ~PEvR~vaarAL~~l~e~~g~~~f~d~~p 456 (569)
T KOG1242|consen 428 VPEVRAVAARALGALLERLGEVSFDDLIP 456 (569)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhccccccc
Confidence 99999999999966666655 44544443
No 35
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.26 E-value=0.11 Score=67.32 Aligned_cols=245 Identities=16% Similarity=0.155 Sum_probs=147.6
Q ss_pred cCCHHHHHHHHHHHHhh-hccCcHHHHHHHhHHHHhhhcccchh---hH-------HHHHHhHHHHHHHHhhccCCHHHH
Q 000832 250 GLSKPMLKDVLAMIKSQ-ISFERKSMLEAYGDVLYRAWKGVEEG---FR-------EDVESGFLQVLIEGAIHASSRAFA 318 (1263)
Q Consensus 250 gl~~~Lik~ih~tIKnQ-Lp~~~kS~le~YGEIyFrAWK~A~gd---~~-------eeIE~~cIQdLm~~AIha~s~~lA 318 (1263)
+=...++..+++.++-- -+..+.-..+.|+-.----|...+.- .+ -.+=..||+.+-...- +--|
T Consensus 368 ~S~De~~~~~~~al~~~r~~~~~l~~~~dl~~~~q~~~~~~~~~~~~~~~~ga~l~vs~lts~IR~lk~~~t----K~~A 443 (1431)
T KOG1240|consen 368 TSSDEIIDSISKALEFSRHLIENLDVIQDLKPEKQLWTARSSPNIKDPKEEGAVLFVSVLTSCIRALKTIQT----KLAA 443 (1431)
T ss_pred cCCcHHHHHHHHHHhhhhhhcccchhhhccchHHhcccccCCcccCCccccceeeeHHHHHHHHHhhhcchh----HHHH
Confidence 33445666666665522 13333444455555444445333321 11 1222345554433222 2123
Q ss_pred HHHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhh
Q 000832 319 ASIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKL 398 (1263)
Q Consensus 319 aklR~VLs~FHsqK~~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~L 398 (1263)
-.+-..|+.|... +.- ..--.|-+--++...-..||+.|..-+..+-+.+.+ ....+..---.=+|.-|..|
T Consensus 444 LeLl~~lS~~i~d------e~~-LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~-~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 444 LELLQELSTYIDD------EVK-LDRVLPYFVHLLMDSEADVRATALETLTELLALVRD-IPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred HHHHHHHhhhcch------HHH-HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccC-CCcccchhhHhhhhhhhHhh
Confidence 3333444443321 222 233467788888999999999999888888777754 22221122222246778999
Q ss_pred cCC-CChHHHHHHHhhhhHH---HHHHHhh-----------------CC-------hhHHHHHHHHHHHHhccCCCchHH
Q 000832 399 LTD-DCPDVRVVAVEGCCRI---LHLFWEL-----------------IP-------SATITKIITKIFDDNSHDLCNEVR 450 (1263)
Q Consensus 399 L~D-DtPMVRRAAA~gVcri---LskfWEi-----------------IP-------~~~I~slL~~If~~LAkDsQDSVR 450 (1263)
+.| ..--||.+=|.++... ...|-+. .+ .+.....+..++..|..|.+.-||
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vk 595 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVK 595 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 999 7778888877754221 1111110 11 123444566778889999999999
Q ss_pred HHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCc
Q 000832 451 LATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQ 506 (1263)
Q Consensus 451 laVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgiK 506 (1263)
.+.++.++.|-........-..+|+.+-.+++|+.|+.|-||.|.+.-++--+|-+
T Consensus 596 r~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r 651 (1431)
T KOG1240|consen 596 RALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR 651 (1431)
T ss_pred HHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee
Confidence 99999988877666656665668999999999999999999999877666555543
No 36
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.26 E-value=0.058 Score=65.80 Aligned_cols=184 Identities=20% Similarity=0.237 Sum_probs=136.3
Q ss_pred CcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCC-CCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHh
Q 000832 334 TPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLE-DPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVE 412 (1263)
Q Consensus 334 ~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlv-dpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~ 412 (1263)
...|++-=..+.+|+|.|.+.-+.+..+.-++.++--.+-++ || .+....|-+++..+..-+.|.-|.||..|+.
T Consensus 362 V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp----~~lapfl~~Llp~lk~~~~d~~PEvR~vaar 437 (569)
T KOG1242|consen 362 VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDP----KDLAPFLPSLLPGLKENLDDAVPEVRAVAAR 437 (569)
T ss_pred eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCH----HHHhhhHHHHhhHHHHHhcCCChhHHHHHHH
Confidence 457787778899999999999999999999999999999988 44 2466778888888899999999999999999
Q ss_pred hhhHHHHHHHhhCChhHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHhhCCCCchHHHHhHHHhh-hhhcC-CCchHHH
Q 000832 413 GCCRILHLFWELIPSATITKIITKIFDDNSHDL-CNEVRLATVNGIIYLLGNPLSHEVLKVLLPRL-GHLMQ-DNVLSVR 489 (1263)
Q Consensus 413 gVcriLskfWEiIP~~~I~slL~~If~~LAkDs-QDSVRlaVVeGLiaLLkn~~She~Lk~LLP~L-ksLI~-DkSWRVR 489 (1263)
.+|..+...-+.- . +.+.+.+.....+. ..-=|...-+++..++....- +....++|.+ .+..+ +..||+|
T Consensus 438 AL~~l~e~~g~~~----f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v-~~~~~~~~~~~a~~~~~~~~~~~~ 511 (569)
T KOG1242|consen 438 ALGALLERLGEVS----F-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGV-EKVEDILPEILANASSVLIDERIR 511 (569)
T ss_pred HHHHHHHHHHhhc----c-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccc-hHHHHHHHHHHHHHhhccchhhhc
Confidence 7666655433322 2 22334444444554 466677788888888876543 3444455544 44444 5578999
Q ss_pred HHHHHHHHHhhcccCCceeeecC--hHHHHHHHhcCchHH
Q 000832 490 LAMADLLLLLRDIRTFQFNKVVG--LDILLSALANDQSQV 527 (1263)
Q Consensus 490 yAfADLLleLk~irgiKF~~VV~--~D~LLaRLa~Ds~~V 527 (1263)
-.+.-+|.-+-..++++|..=|. ++.++++++++.+-+
T Consensus 512 dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~ 551 (569)
T KOG1242|consen 512 DGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKG 551 (569)
T ss_pred cCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCcc
Confidence 99999999998889988876543 477888888765433
No 37
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.58 E-value=0.19 Score=48.73 Aligned_cols=83 Identities=17% Similarity=0.113 Sum_probs=59.3
Q ss_pred HHHHHhhhhHHHHHHHhhCC---hhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCc--hHHHHhHHHhhhhhc
Q 000832 407 RVVAVEGCCRILHLFWELIP---SATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLS--HEVLKVLLPRLGHLM 481 (1263)
Q Consensus 407 RRAAA~gVcriLskfWEiIP---~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~S--he~Lk~LLP~LksLI 481 (1263)
|+++..+ |+..+..++ .+...+++.+++ ....|....||.++.|++..+++.... -+.+..+++.+..++
T Consensus 3 R~ggli~----Laa~ai~l~~~~~~~l~~Il~pVL-~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 3 RKGGLIG----LAAVAIALGKDISKYLDEILPPVL-KCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLS 77 (97)
T ss_pred hhHHHHH----HHHHHHHchHhHHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554 344444444 345555666666 445777788999999999999976543 224566999999999
Q ss_pred CCCchHHHHHHHH
Q 000832 482 QDNVLSVRLAMAD 494 (1263)
Q Consensus 482 ~DkSWRVRyAfAD 494 (1263)
.|..++||.++.-
T Consensus 78 ~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 78 ADPDENVRSAAEL 90 (97)
T ss_pred cCCchhHHHHHHH
Confidence 9999999998743
No 38
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.54 E-value=5.1 Score=45.98 Aligned_cols=223 Identities=22% Similarity=0.253 Sum_probs=121.0
Q ss_pred HHHHHHhHHHHHHHHhhccCCHHHHHHHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcC
Q 000832 294 REDVESGFLQVLIEGAIHASSRAFAASIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFP 373 (1263)
Q Consensus 294 ~eeIE~~cIQdLm~~AIha~s~~lAaklR~VLs~FHsqK~~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AFP 373 (1263)
.+.+|.. |++.+...-.-+...=-+.++.+...|-++-...-|++....+. +.+-|.++...-.-+.-|+.++..+.=
T Consensus 38 ~~~~e~~-L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~-~~~~k~lkkg~~~E~~lA~~~l~Ll~l 115 (309)
T PF05004_consen 38 QEDLEDK-LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLL-DALLKSLKKGKSEEQALAARALALLAL 115 (309)
T ss_pred hhHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHHHHhccCCHHHHHHHHHHHHHHhh
Confidence 3445542 44455444432211112334444444433322233444334433 333444444443556667666665555
Q ss_pred CCCCccchHHHHHHHHHHHHHHhhhcCCCC--hHHHHHHHhhhhHHHHHHHhhCChhHHH---HHHHHHHHH--hccCCC
Q 000832 374 LEDPDATKEVKDTLFDKQFFLLEKLLTDDC--PDVRVVAVEGCCRILHLFWELIPSATIT---KIITKIFDD--NSHDLC 446 (1263)
Q Consensus 374 lvdpd~~rEe~d~EL~kQF~~L~~LL~DDt--PMVRRAAA~gVcriLskfWEiIP~~~I~---slL~~If~~--LAkDsQ 446 (1263)
.+++... .+..+...+..|.+.+.|.. |.+|.+++..++ +-.|.-.-..+.+. +.+..||.. .-.|..
T Consensus 116 tlg~g~~---~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLa--i~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~ 190 (309)
T PF05004_consen 116 TLGAGED---SEEIFEELKPVLKRILTDSSASPKARAACLEALA--ICTFVGGSDEEETEELMESLESIFLLSILKSDGN 190 (309)
T ss_pred hcCCCcc---HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHH--HHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCC
Confidence 5443222 23444555567789999865 567766654321 11222233344444 455555543 222332
Q ss_pred ---------chHHHHHHHHHHHhhCCCCc---hHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCC---ceeeec
Q 000832 447 ---------NEVRLATVNGIIYLLGNPLS---HEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTF---QFNKVV 511 (1263)
Q Consensus 447 ---------DSVRlaVVeGLiaLLkn~~S---he~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgi---KF~~VV 511 (1263)
..|..+++.+-..|+-.... ...++..+|.+..++.-.+..||.|+.+.+.-|-+.... .|..-
T Consensus 191 ~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~- 269 (309)
T PF05004_consen 191 APVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYE- 269 (309)
T ss_pred cccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhccccccccc-
Confidence 46999999999988865544 344566899999999999999999999988866444332 23111
Q ss_pred ChHHHH---HHHhcCc
Q 000832 512 GLDILL---SALANDQ 524 (1263)
Q Consensus 512 ~~D~LL---aRLa~Ds 524 (1263)
.+++|+ +.|+.|+
T Consensus 270 ~~~~l~~~l~~La~dS 285 (309)
T PF05004_consen 270 DMEELLEQLRELATDS 285 (309)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 556664 4556665
No 39
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.45 E-value=0.07 Score=45.09 Aligned_cols=52 Identities=29% Similarity=0.209 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhh
Q 000832 358 SNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGC 414 (1263)
Q Consensus 358 ftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gV 414 (1263)
|.||.+|+-.+..+--.. + +..+..+.+.+..|..+++||.+.||.+|+..+
T Consensus 1 p~vR~~A~~aLg~l~~~~-~----~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aL 52 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGC-P----ELLQPYLPELLPALIPLLQDDDDSVRAAAAWAL 52 (55)
T ss_dssp HHHHHHHHHHHHCTTTTT-H----HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhccc-H----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 589999999888732221 2 234556777788889999999999999998754
No 40
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.25 E-value=2.3 Score=54.04 Aligned_cols=92 Identities=20% Similarity=0.223 Sum_probs=64.6
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhC
Q 000832 346 EPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELI 425 (1263)
Q Consensus 346 ~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiI 425 (1263)
..-++|.++.+|..+|++|.-.+..+ +++- +--.+. -++.+...|..|+||+.||.. +.+....=
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsI--Rvp~------IaPI~l---lAIk~~~~D~s~yVRk~AA~A----IpKLYsLd 174 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSI--RVPM------IAPIML---LAIKKAVTDPSPYVRKTAAHA----IPKLYSLD 174 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhc--chhh------HHHHHH---HHHHHHhcCCcHHHHHHHHHh----hHHHhcCC
Confidence 45578999999999999999988865 3321 122332 245889999999999999985 45555555
Q ss_pred ChhHHHHHHHHHHHHhccCCCchHHHHHH
Q 000832 426 PSATITKIITKIFDDNSHDLCNEVRLATV 454 (1263)
Q Consensus 426 P~~~I~slL~~If~~LAkDsQDSVRlaVV 454 (1263)
|.+.- .|..++..|..|.+..|-=++|
T Consensus 175 ~e~k~--qL~e~I~~LLaD~splVvgsAv 201 (968)
T KOG1060|consen 175 PEQKD--QLEEVIKKLLADRSPLVVGSAV 201 (968)
T ss_pred hhhHH--HHHHHHHHHhcCCCCcchhHHH
Confidence 54444 5667888888888766544443
No 41
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.10 E-value=2.5 Score=53.33 Aligned_cols=106 Identities=19% Similarity=0.288 Sum_probs=63.3
Q ss_pred HHHhHHHHHHHHhhccC---CHHHHHHHHHHHhhHhhcCCCcchHHHHH-HhhHHHHHHhhcCCchHHHHHHHHHhHhhc
Q 000832 297 VESGFLQVLIEGAIHAS---SRAFAASIRRVLGGFVNQRTTPGVEKMLF-NLTEPVMFRSLQAANSNVRQNALHLLLDLF 372 (1263)
Q Consensus 297 IE~~cIQdLm~~AIha~---s~~lAaklR~VLs~FHsqK~~kgVdemL~-rLY~PILwRLLka~NftVR~SA~~LF~~AF 372 (1263)
.|+++++.+..+.+... ++.+..++-.+|...... ...+|+.++ .+-..++.|+..-.- +||..|.--+.-.-
T Consensus 78 ~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~--~~eidd~vfn~l~e~l~~Rl~Drep-~VRiqAv~aLsrlQ 154 (892)
T KOG2025|consen 78 KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE--NAEIDDDVFNKLNEKLLIRLKDREP-NVRIQAVLALSRLQ 154 (892)
T ss_pred chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc--ccccCHHHHHHHHHHHHHHHhccCc-hHHHHHHHHHHHHh
Confidence 34457888888888554 444444444444443332 234444443 355667777776654 99999987776553
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhhhc-CCCChHHHHHHHhhh
Q 000832 373 PLEDPDATKEVKDTLFDKQFFLLEKLL-TDDCPDVRVVAVEGC 414 (1263)
Q Consensus 373 Plvdpd~~rEe~d~EL~kQF~~L~~LL-~DDtPMVRRAAA~gV 414 (1263)
. +|.. + +-...+.| ..++ .|+.|+|||+|-.++
T Consensus 155 ~--d~~d--e--e~~v~n~l---~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 155 G--DPKD--E--ECPVVNLL---KDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred c--CCCC--C--cccHHHHH---HHHHhcCCcHHHHHHHHHhh
Confidence 2 2211 1 12345555 4444 578999999998753
No 42
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.91 E-value=0.23 Score=60.68 Aligned_cols=126 Identities=19% Similarity=0.192 Sum_probs=95.0
Q ss_pred hhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHh---hCCCCchHHHHh
Q 000832 396 EKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYL---LGNPLSHEVLKV 472 (1263)
Q Consensus 396 ~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaL---Lkn~~She~Lk~ 472 (1263)
.+-+.|--.+=|.|||.-+=+....|.+.=.-+.|.++|..+.++.+.-.+..-|-..+-|+++. +.... ...++.
T Consensus 6 ~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~-~~Y~~~ 84 (675)
T KOG0212|consen 6 ARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKD-AGYLEK 84 (675)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhcccc-HHHHHH
Confidence 45567777789999999887778877777777888888888888888877776777888888776 34333 338899
Q ss_pred HHHhhhhhcCCCchHHHHHHHHHHHHhhcccC-Cc---eeeecChHHHHHHHhcCch
Q 000832 473 LLPRLGHLMQDNVLSVRLAMADLLLLLRDIRT-FQ---FNKVVGLDILLSALANDQS 525 (1263)
Q Consensus 473 LLP~LksLI~DkSWRVRyAfADLLleLk~irg-iK---F~~VV~~D~LLaRLa~Ds~ 525 (1263)
++|.+-+.++|..-||||.+++-+..++++-. .. |+++ -+.+.++..|+.
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~i---FdvL~klsaDsd 138 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEI---FDVLCKLSADSD 138 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHH---HHHHHHHhcCCc
Confidence 99999999999999999999999998877543 21 2222 233556666664
No 43
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.91 E-value=11 Score=47.61 Aligned_cols=179 Identities=22% Similarity=0.251 Sum_probs=115.7
Q ss_pred HHHHhhcCCchHHHHHHHHHhHh---hcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhh
Q 000832 348 VMFRSLQAANSNVRQNALHLLLD---LFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWEL 424 (1263)
Q Consensus 348 ILwRLLka~NftVR~SA~~LF~~---AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEi 424 (1263)
-...+++.++-.||.+|.-|+.. .+|.-.+.. .+.......-|.-+=.-+.|-.-.||..|++. |+.| +.
T Consensus 238 ~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e--~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~----lG~~-~~ 310 (823)
T KOG2259|consen 238 RAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE--SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKA----LGEF-EQ 310 (823)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch--hhhhhhHHHHHHHHHHHHhcCceeeeehHHHH----hchH-HH
Confidence 34456788899999999877664 454221211 11222344455344455789999999999995 4433 33
Q ss_pred CChhHHHHHHHH-HHH-----------------Hh--------c----------------------------cCCCchHH
Q 000832 425 IPSATITKIITK-IFD-----------------DN--------S----------------------------HDLCNEVR 450 (1263)
Q Consensus 425 IP~~~I~slL~~-If~-----------------~L--------A----------------------------kDsQDSVR 450 (1263)
++.++|.+.|.+ +.. .. . .|+--+||
T Consensus 311 vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR 390 (823)
T KOG2259|consen 311 VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVR 390 (823)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHH
Confidence 555555555543 211 11 0 12223699
Q ss_pred HHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhcCchHHHHH
Q 000832 451 LATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALANDQSQVAQK 530 (1263)
Q Consensus 451 laVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~Ds~~V~k~ 530 (1263)
.++|.++..|+-+...-. ..-|..|-.+++|+-.-||+-+..-|-.|.++..+ .+- -++.++..|++-+..||+.
T Consensus 391 ~AAV~Sl~~La~ssP~FA--~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i--~ee-ql~~il~~L~D~s~dvRe~ 465 (823)
T KOG2259|consen 391 RAAVASLCSLATSSPGFA--VRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAI--REE-QLRQILESLEDRSVDVREA 465 (823)
T ss_pred HHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhee--cHH-HHHHHHHHHHhcCHHHHHH
Confidence 999999999997644321 12345566788999999999999999999987332 221 2456688888888889998
Q ss_pred HHHHhccc
Q 000832 531 ITRLLMPS 538 (1263)
Q Consensus 531 IvkLLipS 538 (1263)
+.+||-..
T Consensus 466 l~elL~~~ 473 (823)
T KOG2259|consen 466 LRELLKNA 473 (823)
T ss_pred HHHHHHhc
Confidence 88887664
No 44
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.79 E-value=2 Score=53.05 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=58.3
Q ss_pred HHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHH
Q 000832 342 FNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLF 421 (1263)
Q Consensus 342 ~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskf 421 (1263)
...|.-||. +.++ ...++.=|+.+++-+|...++ . + +. .++++.+||.|+.+.||++|+.++. .+
T Consensus 22 ~~~y~~il~-~~kg-~~k~K~Laaq~I~kffk~FP~-l-~---~~----Ai~a~~DLcEDed~~iR~~aik~lp----~~ 86 (556)
T PF05918_consen 22 EEDYKEILD-GVKG-SPKEKRLAAQFIPKFFKHFPD-L-Q---EE----AINAQLDLCEDEDVQIRKQAIKGLP----QL 86 (556)
T ss_dssp HHHHHHHHH-GGGS--HHHHHHHHHHHHHHHCC-GG-G-H---HH----HHHHHHHHHT-SSHHHHHHHHHHGG----GG
T ss_pred HHHHHHHHH-HccC-CHHHHHHHHHHHHHHHhhChh-h-H---HH----HHHHHHHHHhcccHHHHHHHHHhHH----HH
Confidence 456777776 4444 478899999999999999854 3 1 23 3456679999999999999999743 23
Q ss_pred HhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhC
Q 000832 422 WELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLG 462 (1263)
Q Consensus 422 WEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLk 462 (1263)
..-- ++.+..+..-|.+-|..|+ ...+-+|=++|..+++
T Consensus 87 ck~~-~~~v~kvaDvL~QlL~tdd-~~E~~~v~~sL~~ll~ 125 (556)
T PF05918_consen 87 CKDN-PEHVSKVADVLVQLLQTDD-PVELDAVKNSLMSLLK 125 (556)
T ss_dssp --T---T-HHHHHHHHHHHTT----HHHHHHHHHHHHHHHH
T ss_pred HHhH-HHHHhHHHHHHHHHHhccc-HHHHHHHHHHHHHHHh
Confidence 2222 2334444443444444443 2233334444444444
No 45
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.50 E-value=0.65 Score=60.71 Aligned_cols=251 Identities=21% Similarity=0.291 Sum_probs=155.0
Q ss_pred hhHHHHHHhhcCC-chHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHH
Q 000832 344 LTEPVMFRSLQAA-NSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFW 422 (1263)
Q Consensus 344 LY~PILwRLLka~-NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfW 422 (1263)
++.++|--...+= --..|.+|..|+..+-+.++++ ..|++...++..|++|+.+.||.+|.+-++++|+..=
T Consensus 422 l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de-------~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr 494 (1431)
T KOG1240|consen 422 LFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDE-------VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR 494 (1431)
T ss_pred eeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH-------HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc
Confidence 4556654333222 2246899999999998888764 3577777889999999999999999999999999655
Q ss_pred hhCC--hhHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhh--hcCCC-------------
Q 000832 423 ELIP--SATITKIITKIFDDNSHDL-CNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGH--LMQDN------------- 484 (1263)
Q Consensus 423 EiIP--~~~I~slL~~If~~LAkDs-QDSVRlaVVeGLiaLLkn~~She~Lk~LLP~Lks--LI~Dk------------- 484 (1263)
++=| +.+..+.|.|.++.|+.|. -..||++.-.++..+++... .+..+-..++. +.+|+
T Consensus 495 ~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~---rFle~~q~~~~~g~~n~~nset~~~~~~~~~ 571 (1431)
T KOG1240|consen 495 DIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY---RFLELTQELRQAGMLNDPNSETAPEQNYNTE 571 (1431)
T ss_pred CCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH---HHHHHHHHHHhcccccCcccccccccccchH
Confidence 5433 4577888999999999995 57799998888877765310 00001111111 11221
Q ss_pred chHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhcCc-hHHHHHHHHHhccc--CCCCCCChHHHhHHHHHHHhcCh
Q 000832 485 VLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALANDQ-SQVAQKITRLLMPS--YFPLKVNIKEACSRCVTIVKRSP 561 (1263)
Q Consensus 485 SWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~Ds-~~V~k~IvkLLipS--fFP~k~s~~E~~~RCi~Lik~nP 561 (1263)
.-..+.. +.+....|-.|+ +-|++.+.+-|.|- ||-.-.+.|.-..-.+|++...-
T Consensus 572 ~~~L~~~---------------------V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkD 630 (1431)
T KOG1240|consen 572 LQALHHT---------------------VEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKD 630 (1431)
T ss_pred HHHHHHH---------------------HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCcc
Confidence 1112222 233344444554 35777777776665 66666666666666666665443
Q ss_pred HHH-HHHHHHHhhcCCCh----HHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHHhh-hhhhHhHHHHHHh
Q 000832 562 VAG-ARFCEFAVSEGAPL----ESLVELVTVFIRLVLSHDKLDEDQIEGLLAAVSYLCKD-IAREQCYKNALKE 629 (1263)
Q Consensus 562 ~Aa-~~Fy~~a~~~~a~~----~~l~~Li~~ll~~~ls~~k~~~e~~eg~~~a~a~L~~~-L~~~~~~k~~l~~ 629 (1263)
-+. -.||+-.. |++. .++-+.+-=++..++++.+ +--+..-+.+.+.||+. +...+.++..++.
T Consensus 631 w~LR~aFfdsI~--gvsi~VG~rs~seyllPLl~Q~ltD~E--E~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~ 700 (1431)
T KOG1240|consen 631 WRLRGAFFDSIV--GVSIFVGWRSVSEYLLPLLQQGLTDGE--EAVIVSALGSLSILIKLGLLRKPAVKDILQD 700 (1431)
T ss_pred HHHHHHHHhhcc--ceEEEEeeeeHHHHHHHHHHHhccCcc--hhhHHHHHHHHHHHHHhcccchHHHHHHHHh
Confidence 333 34666443 4332 4566666667777776543 23466677777777653 4445554444443
No 46
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.33 E-value=7 Score=46.08 Aligned_cols=185 Identities=19% Similarity=0.217 Sum_probs=118.4
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHhhHhhcC-CCcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhH----hhcCCC
Q 000832 301 FLQVLIEGAIHASSRAFAASIRRVLGGFVNQR-TTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLL----DLFPLE 375 (1263)
Q Consensus 301 cIQdLm~~AIha~s~~lAaklR~VLs~FHsqK-~~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~----~AFPlv 375 (1263)
.+|.+++-+.+..++.......+.|....++- ....+++.+......+ ........|..+-.++. ...-+.
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSI----SSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhh----cccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 78999999998887666667777887777662 2233444443333333 44445555666655553 233344
Q ss_pred CCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCC-----------hhHHHHHHHHHHHHhccC
Q 000832 376 DPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIP-----------SATITKIITKIFDDNSHD 444 (1263)
Q Consensus 376 dpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP-----------~~~I~slL~~If~~LAkD 444 (1263)
+|.. .++-.. |.+++.| |.+...||+++.-+++.+=+.+. .+.+-..+.|.+-+-.++
T Consensus 266 ~~~~------~~~~~~---L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~ 334 (415)
T PF12460_consen 266 HPLA------TELLDK---LLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKE 334 (415)
T ss_pred CchH------HHHHHH---HHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhh
Confidence 4532 223222 3667766 89999999998777765433333 233333334444444456
Q ss_pred CCchHHHHHHHHHHHhhCCCCchH---HHHhHHHhhhhhcCCCchHHHHHHHHHHHHhh
Q 000832 445 LCNEVRLATVNGIIYLLGNPLSHE---VLKVLLPRLGHLMQDNVLSVRLAMADLLLLLR 500 (1263)
Q Consensus 445 sQDSVRlaVVeGLiaLLkn~~She---~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk 500 (1263)
..+++|...+.++..++++.+..- .+..++|.+...+.=++..||.+..+.|..+-
T Consensus 335 ~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l 393 (415)
T PF12460_consen 335 ADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMIL 393 (415)
T ss_pred cChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 667799999999999999877533 44559999988888888889999998854443
No 47
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.29 E-value=1.1 Score=55.11 Aligned_cols=162 Identities=20% Similarity=0.184 Sum_probs=114.9
Q ss_pred HHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHH
Q 000832 340 MLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILH 419 (1263)
Q Consensus 340 mL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLs 419 (1263)
-+..+..|++.- ....+..||.-||.=+..+-+.+..+. -...+..|+.+-++..|..++||-+|-. |.
T Consensus 81 Y~~~iv~Pv~~c-f~D~d~~vRyyACEsLYNiaKv~k~~v-----~~~Fn~iFdvL~klsaDsd~~V~~~aeL-----Ld 149 (675)
T KOG0212|consen 81 YLEKIVPPVLNC-FSDQDSQVRYYACESLYNIAKVAKGEV-----LVYFNEIFDVLCKLSADSDQNVRGGAEL-----LD 149 (675)
T ss_pred HHHHhhHHHHHh-ccCccceeeeHhHHHHHHHHHHhccCc-----ccchHHHHHHHHHHhcCCccccccHHHH-----HH
Confidence 466677777764 455566999999998888777776543 3556777999999999999999998765 45
Q ss_pred HHHhhCCh----hHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCch--HHHHhHHHhhhhhcCCCchHHHHHH-
Q 000832 420 LFWELIPS----ATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSH--EVLKVLLPRLGHLMQDNVLSVRLAM- 492 (1263)
Q Consensus 420 kfWEiIP~----~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~Sh--e~Lk~LLP~LksLI~DkSWRVRyAf- 492 (1263)
....-|.. +.....+.|+++.-..+.-+.+|..+|+=+..+-..|.-. ..+..+++.+-+++.|.+..||-..
T Consensus 150 RLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~ 229 (675)
T KOG0212|consen 150 RLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTD 229 (675)
T ss_pred HHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHH
Confidence 54444443 3345556788888778888999999998877665554432 2334589999999999999999543
Q ss_pred ---HHHHHHhhcccCC-ceeeecC
Q 000832 493 ---ADLLLLLRDIRTF-QFNKVVG 512 (1263)
Q Consensus 493 ---ADLLleLk~irgi-KF~~VV~ 512 (1263)
-+.|.+|+..-.. +|-++++
T Consensus 230 t~l~~fL~eI~s~P~s~d~~~~i~ 253 (675)
T KOG0212|consen 230 TLLSEFLAEIRSSPSSMDYDDMIN 253 (675)
T ss_pred HHHHHHHHHHhcCccccCcccchh
Confidence 3455556544333 5555543
No 48
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.27 E-value=0.28 Score=45.16 Aligned_cols=109 Identities=12% Similarity=0.074 Sum_probs=67.7
Q ss_pred HhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHH-HHHHHHhhhcCCCChHHHHHHHhhhhHHHHHH
Q 000832 343 NLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFD-KQFFLLEKLLTDDCPDVRVVAVEGCCRILHLF 421 (1263)
Q Consensus 343 rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~-kQF~~L~~LL~DDtPMVRRAAA~gVcriLskf 421 (1263)
.-..|.+-..++..++.+|..|+..+..+.-..++ . .+..++ ..+..+.+++.|+.|.||..|+.-++.+.
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~----~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~--- 77 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNND-N----IQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLA--- 77 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHH-H----HHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHc---
Confidence 33556666677777889999999998876554322 2 122222 55677899999999999999998544443
Q ss_pred HhhCCh--hHHHHH-HHHHHHHhccCCCchHHHHHHHHHHHh
Q 000832 422 WELIPS--ATITKI-ITKIFDDNSHDLCNEVRLATVNGIIYL 460 (1263)
Q Consensus 422 WEiIP~--~~I~sl-L~~If~~LAkDsQDSVRlaVVeGLiaL 460 (1263)
..-+. ..+.+. +.+.+-.+.+|....||-.+...+..+
T Consensus 78 -~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 78 -AGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred -cCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33221 111111 233444444566677888777776654
No 49
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.15 E-value=57 Score=46.50 Aligned_cols=302 Identities=12% Similarity=0.112 Sum_probs=173.0
Q ss_pred HHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHH--HHHHHHHhhhcCCCChHHHHHHHhhhhHH
Q 000832 340 MLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLF--DKQFFLLEKLLTDDCPDVRVVAVEGCCRI 417 (1263)
Q Consensus 340 mL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL--~kQF~~L~~LL~DDtPMVRRAAA~gVcri 417 (1263)
++.+-..|.|.++++..+-.+|..|+..+..+.--. ++ .+..+ ..-+..|.+||..+.+.+|..|+..+.
T Consensus 442 Ii~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~n-de-----nr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~-- 513 (2102)
T PLN03200 442 LGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEV-DE-----SKWAITAAGGIPPLVQLLETGSQKAKEDSATVLW-- 513 (2102)
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HH-----HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH--
Confidence 334447899999999999999999998887653221 11 11111 123566799999999999999998543
Q ss_pred HHHHHhhCChhHHHH------HHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHH
Q 000832 418 LHLFWELIPSATITK------IITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLA 491 (1263)
Q Consensus 418 LskfWEiIP~~~I~s------lL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyA 491 (1263)
.... -+++ +.. .+.++++-| ++....+|..+..++..++.... .+.+ +.+.+++...+.++...
T Consensus 514 --NLa~-~~~q-ir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~~d-~~~I----~~Lv~LLlsdd~~~~~~ 583 (2102)
T PLN03200 514 --NLCC-HSED-IRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRTAD-AATI----SQLTALLLGDLPESKVH 583 (2102)
T ss_pred --HHhC-CcHH-HHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhccc-hhHH----HHHHHHhcCCChhHHHH
Confidence 2221 1222 222 244566665 34456788888888888876533 2222 44555666666777777
Q ss_pred HHHHHHHhhcccCCc--eee----ecChHHHHHHHhcCchHHHHHHHHHhcccCCCCCCC------hHHHhHHHHHHHhc
Q 000832 492 MADLLLLLRDIRTFQ--FNK----VVGLDILLSALANDQSQVAQKITRLLMPSYFPLKVN------IKEACSRCVTIVKR 559 (1263)
Q Consensus 492 fADLLleLk~irgiK--F~~----VV~~D~LLaRLa~Ds~~V~k~IvkLLipSfFP~k~s------~~E~~~RCi~Lik~ 559 (1263)
+.+.+..+......+ +.. --+++.|..-|..+++.+.+..+ ..+-+||..+.. ..+.+..++.|++.
T Consensus 584 aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa-~iLsnL~a~~~d~~~avv~agaIpPLV~LLss 662 (2102)
T PLN03200 584 VLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAA-SVLADIFSSRQDLCESLATDEIINPCIKLLTN 662 (2102)
T ss_pred HHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHH-HHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc
Confidence 787776654322222 111 12667777777778878866666 555566665533 23467888999988
Q ss_pred ChH-----HHHHHHHHHhhcCCChHHHHH-----HHHHHHHhhccCCCCChhHHHHHHHHHHHHHhhhhhhHhHHHHHHh
Q 000832 560 SPV-----AGARFCEFAVSEGAPLESLVE-----LVTVFIRLVLSHDKLDEDQIEGLLAAVSYLCKDIAREQCYKNALKE 629 (1263)
Q Consensus 560 nP~-----Aa~~Fy~~a~~~~a~~~~l~~-----Li~~ll~~~ls~~k~~~e~~eg~~~a~a~L~~~L~~~~~~k~~l~~ 629 (1263)
+.. ||..--..+ .+...++.+. .|.-++.+.-+ .+.+..+--+.|.+++.+.= .....+.
T Consensus 663 ~~~~v~keAA~AL~nL~--~~~~~~q~~~~v~~GaV~pL~~LL~~---~d~~v~e~Al~ALanLl~~~----e~~~ei~- 732 (2102)
T PLN03200 663 NTEAVATQSARALAALS--RSIKENRKVSYAAEDAIKPLIKLAKS---SSIEVAEQAVCALANLLSDP----EVAAEAL- 732 (2102)
T ss_pred CChHHHHHHHHHHHHHH--hCCCHHHHHHHHHcCCHHHHHHHHhC---CChHHHHHHHHHHHHHHcCc----hHHHHHH-
Confidence 763 333322222 2334443333 25556666532 34556666666766665432 1112111
Q ss_pred HhhhhhHHHHHHhhccc------cccchhhhhhcccCCCc-hhHHHHHHH
Q 000832 630 LFANDKVKSLFAAASTG------RARSSVFEIVSTVSPDN-VVGLLEQCM 672 (1263)
Q Consensus 630 l~~g~~l~~ll~~a~t~------~a~sa~~~I~s~~~~~~-~~~~~~~c~ 672 (1263)
..+.++.|...-.++ .|..++..+....|.++ +..-...|.
T Consensus 733 --~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g 780 (2102)
T PLN03200 733 --AEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRG 780 (2102)
T ss_pred --hcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhC
Confidence 112233333333222 25666777777888777 445555443
No 50
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=2.5 Score=56.28 Aligned_cols=222 Identities=19% Similarity=0.238 Sum_probs=130.5
Q ss_pred HHHHHHhHHHHhhhcccchhhHHHHH-------------HhHHHHHHHHhh-ccCCHHHHHHHHHHHhhHhhcCCCcchH
Q 000832 273 SMLEAYGDVLYRAWKGVEEGFREDVE-------------SGFLQVLIEGAI-HASSRAFAASIRRVLGGFVNQRTTPGVE 338 (1263)
Q Consensus 273 S~le~YGEIyFrAWK~A~gd~~eeIE-------------~~cIQdLm~~AI-ha~s~~lAaklR~VLs~FHsqK~~kgVd 338 (1263)
++++.-||-.+-.|-.....++.-++ ..|+|-+|-..+ -.|. .--.-+-..|..|..||++.+|-
T Consensus 868 silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~-sci~~lidtl~~fs~QktdlNIS 946 (1610)
T KOG1848|consen 868 SILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPT-SCILDLIDTLLVFSRQKTDLNIS 946 (1610)
T ss_pred HHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCCh-HHHHHHHHHHHHHHhhhcccccc
Confidence 45666677666667665433333222 223333333333 1111 11245567888999999987764
Q ss_pred H----HHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhh
Q 000832 339 K----MLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGC 414 (1263)
Q Consensus 339 e----mL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gV 414 (1263)
= ++-.+-.-+-...-+..++.... ...-+.|.-... .-+..+....-.|-.|.++|.|+-|.||..|++-+
T Consensus 947 ltAi~lfWtvsDfl~~km~S~sed~~~~---~~~e~~~ss~~~--~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtl 1021 (1610)
T KOG1848|consen 947 LTAIGLFWTVSDFLKNKMFSTSEDSCAY---NSVEDLYSSMKS--KEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTL 1021 (1610)
T ss_pred HHHHHHHHHHHHHHHhhhhccchhhhhh---cchhhhcccccc--hhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHH
Confidence 1 11111111111111111222222 222223331111 11223455566788899999999999999999999
Q ss_pred hHHHHHHHhhCCh----hHHHHHHHHHHHH------------hccCCCchHHHHHHHHHHHh--------hCCCCchHHH
Q 000832 415 CRILHLFWELIPS----ATITKIITKIFDD------------NSHDLCNEVRLATVNGIIYL--------LGNPLSHEVL 470 (1263)
Q Consensus 415 criLskfWEiIP~----~~I~slL~~If~~------------LAkDsQDSVRlaVVeGLiaL--------Lkn~~She~L 470 (1263)
-++++-.-..+++ ..++..|.|+.+. ..++.-+.-=+.++.|++.+ +.++..-+..
T Consensus 1022 fri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~llnln~f~~vw 1101 (1610)
T KOG1848|consen 1022 FRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVW 1101 (1610)
T ss_pred HHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 8888877666665 4677777777761 22222245566778887764 2344456777
Q ss_pred HhHHHhhhhhcCCCchHHHHHHHHHHHHhh
Q 000832 471 KVLLPRLGHLMQDNVLSVRLAMADLLLLLR 500 (1263)
Q Consensus 471 k~LLP~LksLI~DkSWRVRyAfADLLleLk 500 (1263)
+.+|..++.++-|.|..+-.++...+.++-
T Consensus 1102 e~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1102 EELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 889999999999999999999999887753
No 51
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.08 E-value=7.9 Score=49.13 Aligned_cols=313 Identities=17% Similarity=0.152 Sum_probs=165.8
Q ss_pred HHhhcCCchHHHHHHH----HHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhC
Q 000832 350 FRSLQAANSNVRQNAL----HLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELI 425 (1263)
Q Consensus 350 wRLLka~NftVR~SA~----~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiI 425 (1263)
..++..+-..||.-|+ -.+..+....++.. ....|-+.+ ..+..|.+..||.+..+|+.-++. .
T Consensus 226 ~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i----~~~ll~kI~---d~~a~dt~s~VR~svf~gl~~~l~-----n 293 (1005)
T KOG1949|consen 226 YSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTI----LIDLLKKIT---DELAFDTSSDVRCSVFKGLPMILD-----N 293 (1005)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHH----HHHHHHHHH---HHhhhccchheehhHhcCcHHHHc-----C
Confidence 4588999999998875 45555666776643 345677777 888999999999999999765555 4
Q ss_pred Ch-hHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHH--hHHH---hhhhhcCCCchHHHHHHHHHHHHh
Q 000832 426 PS-ATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLK--VLLP---RLGHLMQDNVLSVRLAMADLLLLL 499 (1263)
Q Consensus 426 P~-~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk--~LLP---~LksLI~DkSWRVRyAfADLLleL 499 (1263)
|. ..+-+.+.|-++-+.+|.+.+||++.|+-+.-|=+. ...+ .+.| .|..+-.|.-+--|--+.-.+..
T Consensus 294 p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v----ra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s- 368 (1005)
T KOG1949|consen 294 PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV----RAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNS- 368 (1005)
T ss_pred ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh----hhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHh-
Confidence 42 445556667888889999999999999866544221 1111 0111 11122233333222221111100
Q ss_pred hcccCCceeeecChHHHH----HHHhcCchHHHHHHHHHhcccCCCCCCChHHHhHHHHHHHhcChHHHHHHHHHHhhcC
Q 000832 500 RDIRTFQFNKVVGLDILL----SALANDQSQVAQKITRLLMPSYFPLKVNIKEACSRCVTIVKRSPVAGARFCEFAVSEG 575 (1263)
Q Consensus 500 k~irgiKF~~VV~~D~LL----aRLa~Ds~~V~k~IvkLLipSfFP~k~s~~E~~~RCi~Lik~nP~Aa~~Fy~~a~~~~ 575 (1263)
|.-|=..++.. .-|..-++.-..+..++|.+- +. --++..+.||+.--.|+ |+|++..+
T Consensus 369 -------~lP~~k~ee~~c~Rc~tlv~~n~~A~~rf~~~l~~~----~~---~~~~~~~hlI~~fln~~---~~~~~~~~ 431 (1005)
T KOG1949|consen 369 -------FLPVNKPEEVWCERCVTLVQMNHAAARRFYQYLHEH----TA---TNIAKLIHLIRHFLNAC---IQRAVREP 431 (1005)
T ss_pred -------hcCCCCcHHHHHHHHHHHHccCHHHHHHHHHHhccc----ch---hhHHHHHHHHHHHHHHH---HHHHhcCC
Confidence 00000001100 011222333344555555432 21 12455667777766776 67776443
Q ss_pred CCh-HHH--HHHHHHHHHhhccCCCCChhHHHHHHHHHHHHHhhhhhhHhHHHHHHhHhhhhhHHHHHHhhccccccchh
Q 000832 576 APL-ESL--VELVTVFIRLVLSHDKLDEDQIEGLLAAVSYLCKDIAREQCYKNALKELFANDKVKSLFAAASTGRARSSV 652 (1263)
Q Consensus 576 a~~-~~l--~~Li~~ll~~~ls~~k~~~e~~eg~~~a~a~L~~~L~~~~~~k~~l~~l~~g~~l~~ll~~a~t~~a~sa~ 652 (1263)
-+- ++. .+=.++.+-.++= ...---+-|..-+.+ -|.++..-| |+ .|+.+..+...++..+.
T Consensus 432 p~lee~~eG~~ka~~yl~~~lV----------~d~~Cma~L~e~~~g---~k~k~d~~f-~~-~kea~~~~in~~~~v~p 496 (1005)
T KOG1949|consen 432 PELEEEEEGREKATVYLKTLLV----------NDVACMAGLLEIIVG---LKKKIDRSF-EN-NKEAKLYTINKFASVLP 496 (1005)
T ss_pred CCCcchhhHHHHHHHHHHHHHH----------HHHHHHHHHHHhcch---HHHHHHHHh-cc-HHHHHHHhhccccccCH
Confidence 221 111 1111221111110 000011122222232 266666664 44 49999999999999999
Q ss_pred hhhhcccCCCchhHHHHHHHhhhhhcCCCChhhhhHHHHHHHhHHhhccCChhHHHHH-HHHHHHHH
Q 000832 653 FEIVSTVSPDNVVGLLEQCMGLISKCKGLSEDEERQAEVRSAHKLLLSSCAFDDMLEA-LTMLLQKA 718 (1263)
Q Consensus 653 ~~I~s~~~~~~~~~~~~~c~~~~~~~~g~~~~~~~q~~~~sa~~~~~s~~~~d~~~~~-l~~~l~~~ 718 (1263)
..|.+|+|+|-..++..+-+-..--=+-.|.-+++- ..++.+. .||..++. ++.++...
T Consensus 497 ~~~S~V~~dd~cksipnDvla~~el~sv~p~~~~p~--~~c~vi~-----t~~S~~~~~~d~gy~vl 556 (1005)
T KOG1949|consen 497 EYLSKVFKDDRCKSIPNDVLALFELMSVMPASAVPP--FSCGVIS-----TLRSREEGAVDKGYCVL 556 (1005)
T ss_pred HHHHHhchhhhhccCchHHHHHhhhhccChhhcCCc--hhhcccc-----ChhHHHHhhccccHHHH
Confidence 999999999988888764443332222222222111 2334433 77777776 44444333
No 52
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.96 E-value=41 Score=45.81 Aligned_cols=362 Identities=17% Similarity=0.118 Sum_probs=182.8
Q ss_pred CCCCCccchHHHHHHhhhhcccccCChhH-------HHHHHHHHHHHhcCCCccchhhhhhhHHHHHHHhhccCccchhH
Q 000832 128 RKVFSSSDLLPAVQLLHNNLILFESDSVL-------SFEIASLCESWWKNDLGGKEMLISQFLPFLVSRSLTLKKKVDVH 200 (1263)
Q Consensus 128 ~~~~~~~~LL~~a~~LHd~L~~~es~~~L-------~~aI~~lCE~WW~~~l~~kE~Lv~qtLp~LL~rSl~~~k~~dI~ 200 (1263)
..+.+..+++.....||.-|...+.+... .+++..=|=. +. +.+. +|.|..-=.+||-
T Consensus 14 ~~~~s~~ell~rLk~l~~~l~~~~qd~~~~~~~~pl~~~l~~~~~L--~h--~d~d-----------vrllvacCvseil 78 (1266)
T KOG1525|consen 14 LNPISKDELLKRLKKLANCLASLDQDNLDLASLLPLADHLIKDFLL--KH--KDKD-----------VRLLVACCVSEIL 78 (1266)
T ss_pred cCcccHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHhhHHHh--cC--CCcC-----------hhHHHHHHHHHHH
Confidence 45677788999988999888866554422 2233222211 00 0000 1111111124888
Q ss_pred hhhhhcccccccCCCCCCHHHHHHHHHHHhhccccccCcc-chhHHHHHhcCCHHHHHHHHHHHHhhhccCcHHHHHHHh
Q 000832 201 RVYSFRDAFALFDFDDNSIEDLKLLLIRCVISPLYLKTED-GRKFLAFLFGLSKPMLKDVLAMIKSQISFERKSMLEAYG 279 (1263)
Q Consensus 201 RL~~lReal~llDf~deS~~slk~LLLrc~~sP~FlkseE-GrrFLAflFgl~~~Lik~ih~tIKnQLp~~~kS~le~YG 279 (1263)
|+|+=. ..|+|+-..++-.++++.|..+.=..+|- +|+| .+-+.+.+.. -.+---+|.+..-+.+.+.
T Consensus 79 Ri~aPe-----aPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~-----~lletl~~~k-~~l~~~l~d~~e~~~~~f~ 147 (1266)
T KOG1525|consen 79 RIYAPE-----APYTDEQLKDIFQLILSQFSGLGDVESPYFKRYF-----YLLETLAKVK-FCLLMLLEDCQELVHELFR 147 (1266)
T ss_pred HHhCCC-----CCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHH-----HHHHHHHHhH-HHheeeccchHHHHHHHHH
Confidence 998743 34788877888888888775433222220 2222 1111111111 1111222433333222222
Q ss_pred HHHHhhhcccchhhHHHHHHhHHHHHHHHhhccCCHHHHHHHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhcCCchH
Q 000832 280 DVLYRAWKGVEEGFREDVESGFLQVLIEGAIHASSRAFAASIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSN 359 (1263)
Q Consensus 280 EIyFrAWK~A~gd~~eeIE~~cIQdLm~~AIha~s~~lAaklR~VLs~FHsqK~~kgVdemL~rLY~PILwRLLka~Nft 359 (1263)
=+|--+- ......+.+ ++++|.-.|--..-.-...++.+|..+.+.+.+.. ..-.++-.-++.|.+..-..+
T Consensus 148 ~f~d~~~----~~~~~~v~~--~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~--~~a~~la~~li~~~a~~~~~~ 219 (1266)
T KOG1525|consen 148 TFFDLAR----KGHPKKVFN--MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTI--KEADKLASDLIERCADNLEDT 219 (1266)
T ss_pred HHHHHHh----ccccHHHHH--HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCcc--HHHHHHHHHHHHHhhhhhchh
Confidence 2211111 122222222 55565555533322334567777777777764322 223455555555555544333
Q ss_pred HHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHH-----------HhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChh
Q 000832 360 VRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFL-----------LEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSA 428 (1263)
Q Consensus 360 VR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~-----------L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~ 428 (1263)
.-.--..-+...++...+. ....-..+.+++++ |..=|.-+.-.||..|+.=++++++.+-..+. +
T Consensus 220 i~~f~~~~~~~~~s~~~~~--~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~ 296 (1266)
T KOG1525|consen 220 IANFLNSCLTEYKSRQSSL--KIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-E 296 (1266)
T ss_pred HHHHHHHHHhhccccccch--hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-c
Confidence 2222222233334344332 12233334333332 33336667778999999988888886655555 2
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCcee
Q 000832 429 TITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFN 508 (1263)
Q Consensus 429 ~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~ 508 (1263)
.-..+..--+.. ..|.++.||...|+.....+-+..++.--..+.-.++....|...|||.-++= ...--.+||
T Consensus 297 ~~~~~~~~fl~r-~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i-----~~~~v~~~~ 370 (1266)
T KOG1525|consen 297 TYDDLWSAFLGR-FNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVI-----VACDVMKFK 370 (1266)
T ss_pred cchHHHHHHHHH-hccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEE-----EEeehhHhh
Confidence 222222222333 36889999999999988887775554444445566777778888888864331 112234566
Q ss_pred eecChHHHHH----HHhcCchHHHHHHHH
Q 000832 509 KVVGLDILLS----ALANDQSQVAQKITR 533 (1263)
Q Consensus 509 ~VV~~D~LLa----RLa~Ds~~V~k~Ivk 533 (1263)
-++..+ +|. |+-+-...||+..-+
T Consensus 371 l~~~~~-ll~~~~eR~rDKk~~VR~~Am~ 398 (1266)
T KOG1525|consen 371 LVYIPL-LLKLVAERLRDKKIKVRKQAMN 398 (1266)
T ss_pred hhhhHH-HHHHHHHHHhhhhHHHHHHHHH
Confidence 666665 544 333334577765443
No 53
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.93 E-value=2 Score=48.27 Aligned_cols=127 Identities=24% Similarity=0.292 Sum_probs=81.8
Q ss_pred HHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHH
Q 000832 339 KMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRIL 418 (1263)
Q Consensus 339 emL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriL 418 (1263)
..+..++.-+|-.+.+.....+|.-|.--+. .|...|.+. . .+.+ .+| .+.++.+.+.||..|.+.+++++
T Consensus 22 ~~l~~ll~~lI~P~v~~~~~~vR~~al~cLG-l~~Lld~~~-a---~~~l-~l~---~~~~~~~~~~v~~~al~~l~Dll 92 (298)
T PF12719_consen 22 ISLESLLDSLILPAVQSSDPAVRELALKCLG-LCCLLDKEL-A---KEHL-PLF---LQALQKDDEEVKITALKALFDLL 92 (298)
T ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHhChHH-H---HHHH-HHH---HHHHHhCCHHHHHHHHHHHHHHH
Confidence 3455677777777788888899988865444 334444432 1 2222 222 33345569999999999999999
Q ss_pred HHHH-hhCChhH------HHHHHHHHHHHhccCCCchHHHHHHHHHHHhh--CCCCc-hHHHHhHH
Q 000832 419 HLFW-ELIPSAT------ITKIITKIFDDNSHDLCNEVRLATVNGIIYLL--GNPLS-HEVLKVLL 474 (1263)
Q Consensus 419 skfW-EiIP~~~------I~slL~~If~~LAkDsQDSVRlaVVeGLiaLL--kn~~S-he~Lk~LL 474 (1263)
-.|= +.++... ....+.+++.+...+.++.||..+++|++.|+ +...+ ..++..++
T Consensus 93 ~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Ll 158 (298)
T PF12719_consen 93 LTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLL 158 (298)
T ss_pred HHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 8774 2332222 23445667777667778899999999999987 33344 44555443
No 54
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=92.86 E-value=11 Score=52.91 Aligned_cols=173 Identities=18% Similarity=0.162 Sum_probs=122.6
Q ss_pred hhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHh
Q 000832 344 LTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWE 423 (1263)
Q Consensus 344 LY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWE 423 (1263)
--.|.|..+++..+-.++-.|+..+...|.-..+ .... --..+.+.-+..|+.+....||+.|+..+ +.+..
T Consensus 609 ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d-~~~a---vv~agaIpPLV~LLss~~~~v~keAA~AL----~nL~~ 680 (2102)
T PLN03200 609 DALRTLIQLLSSSKEETQEKAASVLADIFSSRQD-LCES---LATDEIINPCIKLLTNNTEAVATQSARAL----AALSR 680 (2102)
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH-HHHH---HHHcCCHHHHHHHHhcCChHHHHHHHHHH----HHHHh
Confidence 4678999999999999999999999998875432 2111 11223355678899999999999999864 33333
Q ss_pred hCChhHHHH-----HHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCch-HHH-HhHHHhhhhhcCCCchHHHHHHHHHH
Q 000832 424 LIPSATITK-----IITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSH-EVL-KVLLPRLGHLMQDNVLSVRLAMADLL 496 (1263)
Q Consensus 424 iIP~~~I~s-----lL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~Sh-e~L-k~LLP~LksLI~DkSWRVRyAfADLL 496 (1263)
....+.... .+.+ +-++.++.+..|+-.++.++..++..+... +.. ...+|.+-.++++.+.++|..++..|
T Consensus 681 ~~~~~q~~~~v~~GaV~p-L~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL 759 (2102)
T PLN03200 681 SIKENRKVSYAAEDAIKP-LIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARAL 759 (2102)
T ss_pred CCCHHHHHHHHHcCCHHH-HHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHH
Confidence 333332221 2444 445557788899999999999999877543 333 34889999999999999999999999
Q ss_pred HHhhcccCCc---------eeeecChHHHHHHHhcCch
Q 000832 497 LLLRDIRTFQ---------FNKVVGLDILLSALANDQS 525 (1263)
Q Consensus 497 leLk~irgiK---------F~~VV~~D~LLaRLa~Ds~ 525 (1263)
..++..+... ..-|.++-++|.....|..
T Consensus 760 ~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~ 797 (2102)
T PLN03200 760 AQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSS 797 (2102)
T ss_pred HHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchh
Confidence 9999776522 2334455556665555553
No 55
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.78 E-value=4.9 Score=50.88 Aligned_cols=274 Identities=15% Similarity=0.167 Sum_probs=167.6
Q ss_pred HHHHHHhh-ccccccCccchhHHHHHh-----cCCHHHHHHHHHHHHhhhccCcHHHHHHHhHHHHhhhcccchhhHHHH
Q 000832 224 LLLIRCVI-SPLYLKTEDGRKFLAFLF-----GLSKPMLKDVLAMIKSQISFERKSMLEAYGDVLYRAWKGVEEGFREDV 297 (1263)
Q Consensus 224 ~LLLrc~~-sP~FlkseEGrrFLAflF-----gl~~~Lik~ih~tIKnQLp~~~kS~le~YGEIyFrAWK~A~gd~~eeI 297 (1263)
..|||-|. +|-.+.-.|=--=+.+++ |+...-+..|...+|+. +++.+.+|+...-|-=+.+...-
T Consensus 170 LclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~----p~~yk~~~~~avs~L~riv~~~~---- 241 (938)
T KOG1077|consen 170 LCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKN----PESYKTCLPLAVSRLSRIVVVVG---- 241 (938)
T ss_pred HHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcC----CHHHhhhHHHHHHHHHHHHhhcc----
Confidence 34566663 354444323222244443 45444455555555542 24545555544443333332110
Q ss_pred HHhHHHHHHHHhhccCCHHHHHHHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhh---cCCchHHHHHHHHHhHhhc--
Q 000832 298 ESGFLQVLIEGAIHASSRAFAASIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSL---QAANSNVRQNALHLLLDLF-- 372 (1263)
Q Consensus 298 E~~cIQdLm~~AIha~s~~lAaklR~VLs~FHsqK~~kgVdemL~rLY~PILwRLL---ka~NftVR~SA~~LF~~AF-- 372 (1263)
+. +||.-++.+ |.|++.-++-++|.+|- --.++++-..+.+..+-|+..+- ++.+-.-+..--++++.+.
T Consensus 242 -t~-~qdYTyy~v--P~PWL~vKl~rlLq~~p-~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l 316 (938)
T KOG1077|consen 242 -TS-LQDYTYYFV--PAPWLQVKLLRLLQIYP-TPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISL 316 (938)
T ss_pred -cc-hhhceeecC--CChHHHHHHHHHHHhCC-CCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHH
Confidence 11 366666666 55799999999999982 23367888889998888888877 5555544443333333332
Q ss_pred -CCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHH
Q 000832 373 -PLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRL 451 (1263)
Q Consensus 373 -Plvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRl 451 (1263)
-+.|++ .+.+-+-...|.+++.+-.+-+|=-|-+..|+..+- ....+.++.....||..|-.+.-.|||-
T Consensus 317 ~~h~D~e------~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s~davK~h~d~Ii~sLkterDvSirr 387 (938)
T KOG1077|consen 317 AIHLDSE------PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS---EFSIDAVKKHQDTIINSLKTERDVSIRR 387 (938)
T ss_pred HHHcCCc------HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc---cchHHHHHHHHHHHHHHhccccchHHHH
Confidence 234554 355666667778889999999999998888877662 3334566667777888887677788999
Q ss_pred HHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhcC
Q 000832 452 ATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALAND 523 (1263)
Q Consensus 452 aVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~D 523 (1263)
-+|+-|-+|-+..+...+...+|..|.+ .....|--++-+..-+++...-+|.=-|++--=|-|+|.|
T Consensus 388 ravDLLY~mcD~~Nak~IV~elLqYL~t----Ad~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd 455 (938)
T KOG1077|consen 388 RAVDLLYAMCDVSNAKQIVAELLQYLET----ADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGD 455 (938)
T ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHhh----cchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcc
Confidence 9999998888887777777777776654 3445666666666666666555543333222223355554
No 56
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.62 E-value=0.53 Score=58.57 Aligned_cols=206 Identities=17% Similarity=0.191 Sum_probs=126.5
Q ss_pred HHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHH
Q 000832 339 KMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRIL 418 (1263)
Q Consensus 339 emL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriL 418 (1263)
+.+.....|+|+..+..+.|.+|-++.--+..+-.-+-... -.-|-.++..|..++.|--|.||+..+= -|
T Consensus 388 ~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~-----~p~LpeLip~l~~~L~DKkplVRsITCW----TL 458 (885)
T KOG2023|consen 388 DELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGF-----VPHLPELIPFLLSLLDDKKPLVRSITCW----TL 458 (885)
T ss_pred HHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhc-----ccchHHHHHHHHHHhccCccceeeeeee----eH
Confidence 45677889999999999999999988776665543332221 2234445777899999999999998665 56
Q ss_pred HHHHhhCCh----hHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCc--hHHHHhHHHhhhhh---cCCCchHHH
Q 000832 419 HLFWELIPS----ATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLS--HEVLKVLLPRLGHL---MQDNVLSVR 489 (1263)
Q Consensus 419 skfWEiIP~----~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~S--he~Lk~LLP~LksL---I~DkSWRVR 489 (1263)
+.|...+-. +..+.+|..+++.+ -|+.-.|-.++--++..+-++... -+.+..+|..+-.. -+-++..+=
T Consensus 459 sRys~wv~~~~~~~~f~pvL~~ll~~l-lD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlIL 537 (885)
T KOG2023|consen 459 SRYSKWVVQDSRDEYFKPVLEGLLRRL-LDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLIL 537 (885)
T ss_pred hhhhhhHhcCChHhhhHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehH
Confidence 777555543 34444455555544 366677888887777766554332 22333444433221 234556665
Q ss_pred HHHHHHHHHhhcccCCceeeecChHHH----H---HHHhcCch---H---HHHHHHHHhcccCCCCCCChHHHhHHHHHH
Q 000832 490 LAMADLLLLLRDIRTFQFNKVVGLDIL----L---SALANDQS---Q---VAQKITRLLMPSYFPLKVNIKEACSRCVTI 556 (1263)
Q Consensus 490 yAfADLLleLk~irgiKF~~VV~~D~L----L---aRLa~Ds~---~---V~k~IvkLLipSfFP~k~s~~E~~~RCi~L 556 (1263)
|-++ ..+++..|+..++-.=++-| + .+|.++.+ + --..|+.-|-..|.|-. .+-..||+++
T Consensus 538 YDAI---gtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~---~~Vy~Rc~~i 611 (885)
T KOG2023|consen 538 YDAI---GTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYA---QPVYQRCFRI 611 (885)
T ss_pred HHHH---HHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccC---HHHHHHHHHH
Confidence 5444 44555556666554322222 2 34444332 1 22455667777888884 4568999999
Q ss_pred HhcC
Q 000832 557 VKRS 560 (1263)
Q Consensus 557 ik~n 560 (1263)
++..
T Consensus 612 l~~t 615 (885)
T KOG2023|consen 612 LQKT 615 (885)
T ss_pred HHHH
Confidence 9865
No 57
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.32 E-value=0.2 Score=38.74 Aligned_cols=27 Identities=41% Similarity=0.468 Sum_probs=20.6
Q ss_pred HHHhhhcCCCChHHHHHHHhhhhHHHHHHHh
Q 000832 393 FLLEKLLTDDCPDVRVVAVEGCCRILHLFWE 423 (1263)
Q Consensus 393 ~~L~~LL~DDtPMVRRAAA~gVcriLskfWE 423 (1263)
..+.++++|+.|.||.+|+.. |+.+++
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~----l~~i~~ 29 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAEC----LGAIAE 29 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHH----HHHHHh
Confidence 456899999999999999996 455444
No 58
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=92.25 E-value=2.2 Score=50.88 Aligned_cols=127 Identities=24% Similarity=0.152 Sum_probs=75.7
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhC
Q 000832 346 EPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELI 425 (1263)
Q Consensus 346 ~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiI 425 (1263)
.+.|-++++.+...||.++......- ..+. +..+..++.|+.|.||++|+.. |+.+
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r----~~~~------------~~~L~~~L~d~d~~Vra~A~ra----LG~l---- 174 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAH----RHDP------------GPALEAALTHEDALVRAAALRA----LGEL---- 174 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhh----ccCh------------HHHHHHHhcCCCHHHHHHHHHH----HHhh----
Confidence 45666677888888998877666541 1111 2345777889999999999985 4421
Q ss_pred ChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchH-------------------HH-----HhHHHhhhhhc
Q 000832 426 PSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHE-------------------VL-----KVLLPRLGHLM 481 (1263)
Q Consensus 426 P~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She-------------------~L-----k~LLP~LksLI 481 (1263)
..... + +.+.....|....||..++.++..+-. +..-+ .+ ...++.|..++
T Consensus 175 ~~~~a---~-~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll 249 (410)
T TIGR02270 175 PRRLS---E-STLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELL 249 (410)
T ss_pred ccccc---h-HHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHh
Confidence 11111 1 112234677888999999988865522 11000 00 02344555666
Q ss_pred CCCchHHHHHHHHHHHHhhccc
Q 000832 482 QDNVLSVRLAMADLLLLLRDIR 503 (1263)
Q Consensus 482 ~DkSWRVRyAfADLLleLk~ir 503 (1263)
+|+. ||.+++.-+..+....
T Consensus 250 ~d~~--vr~~a~~AlG~lg~p~ 269 (410)
T TIGR02270 250 QAAA--TRREALRAVGLVGDVE 269 (410)
T ss_pred cChh--hHHHHHHHHHHcCCcc
Confidence 6755 7777777777666444
No 59
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=91.90 E-value=2 Score=48.06 Aligned_cols=147 Identities=24% Similarity=0.167 Sum_probs=91.3
Q ss_pred hHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCC----------h--HHHHHHHh
Q 000832 345 TEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDC----------P--DVRVVAVE 412 (1263)
Q Consensus 345 Y~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDt----------P--MVRRAAA~ 412 (1263)
+.|++..+....|+.||.+|..-+....... -+..+ ...+.|+. + +||.+|+.
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l----~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPL----LEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHH----HHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 3444444444789999999988877552221 12222 34444433 3 68888887
Q ss_pred hhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHH
Q 000832 413 GCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAM 492 (1263)
Q Consensus 413 gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAf 492 (1263)
. |+ .+-.+.. .+....+..|..+.||..+..++..+.... ..+.+.+...+.|.+|.||+..
T Consensus 172 ~----l~---~~~~~~~-----~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 A----LG---ELGDPEA-----IPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred H----HH---HcCChhh-----hHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHH
Confidence 4 33 1222221 234444567777799999999999887653 4566888889999999999999
Q ss_pred HHHHHHhhcccCCceeeecChHHHHHHHhcCchHHHHHHH
Q 000832 493 ADLLLLLRDIRTFQFNKVVGLDILLSALANDQSQVAQKIT 532 (1263)
Q Consensus 493 ADLLleLk~irgiKF~~VV~~D~LLaRLa~Ds~~V~k~Iv 532 (1263)
+..|..+.... ..+.+..-+..+...++....
T Consensus 234 ~~~l~~~~~~~--------~~~~l~~~l~~~~~~~~~~~~ 265 (335)
T COG1413 234 LLALGEIGDEE--------AVDALAKALEDEDVILALLAA 265 (335)
T ss_pred HHHhcccCcch--------hHHHHHHHHhccchHHHHHHH
Confidence 99877665332 334445555555544433333
No 60
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=91.80 E-value=0.95 Score=57.44 Aligned_cols=106 Identities=20% Similarity=0.195 Sum_probs=76.4
Q ss_pred hhHHHHHHHhhCChhHHHHHHHHHHHHhc---cCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHH
Q 000832 414 CCRILHLFWELIPSATITKIITKIFDDNS---HDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRL 490 (1263)
Q Consensus 414 VcriLskfWEiIP~~~I~slL~~If~~LA---kDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRy 490 (1263)
+.|.+..||+..|+..-...+. .++.+- +|....+|..++..+.-|= -.+.+..+++.|+.+++|++..||.
T Consensus 71 lKrL~ylYl~~yak~~P~~~lL-avNti~kDl~d~N~~iR~~AlR~ls~l~----~~el~~~~~~~ik~~l~d~~ayVRk 145 (757)
T COG5096 71 LKRLLYLYLERYAKLKPELALL-AVNTIQKDLQDPNEEIRGFALRTLSLLR----VKELLGNIIDPIKKLLTDPHAYVRK 145 (757)
T ss_pred HHHHHHHHHHHHhccCHHHHHH-HHHHHHhhccCCCHHHHHHHHHHHHhcC----hHHHHHHHHHHHHHHccCCcHHHHH
Confidence 4456789999998543322222 334444 4555679999999887543 2678889999999999999999999
Q ss_pred HHHHHHHHhhcccCCceeeecChHHHHHHHhcCch
Q 000832 491 AMADLLLLLRDIRTFQFNKVVGLDILLSALANDQS 525 (1263)
Q Consensus 491 AfADLLleLk~irgiKF~~VV~~D~LLaRLa~Ds~ 525 (1263)
.+|..+.++=..- .+..+=.|..+++.-|..|+.
T Consensus 146 ~Aalav~kly~ld-~~l~~~~g~~~~l~~l~~D~d 179 (757)
T COG5096 146 TAALAVAKLYRLD-KDLYHELGLIDILKELVADSD 179 (757)
T ss_pred HHHHHHHHHHhcC-HhhhhcccHHHHHHHHhhCCC
Confidence 9999988876543 444444577888887776653
No 61
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=90.18 E-value=2.4 Score=50.53 Aligned_cols=144 Identities=14% Similarity=-0.054 Sum_probs=91.0
Q ss_pred HHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCCh
Q 000832 348 VMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPS 427 (1263)
Q Consensus 348 ILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~ 427 (1263)
++..+...+.-.+|..|+..+... -++ .- ...+...+.|+.+.||++++.. |+ .++.
T Consensus 59 L~~aL~~d~~~ev~~~aa~al~~~---~~~---------~~---~~~L~~~L~d~~~~vr~aaa~A----Lg----~i~~ 115 (410)
T TIGR02270 59 LVSALAEADEPGRVACAALALLAQ---EDA---------LD---LRSVLAVLQAGPEGLCAGIQAA----LG----WLGG 115 (410)
T ss_pred HHHHHhhCCChhHHHHHHHHHhcc---CCh---------HH---HHHHHHHhcCCCHHHHHHHHHH----Hh----cCCc
Confidence 333333566677777655444311 111 10 2445778889999999999985 45 3444
Q ss_pred hHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCce
Q 000832 428 ATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQF 507 (1263)
Q Consensus 428 ~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF 507 (1263)
+.....|.+ +..|....||.+++..+...-. .-.+.+..+++|.+..||.+++..|..++....
T Consensus 116 ~~a~~~L~~----~L~~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a--- 179 (410)
T TIGR02270 116 RQAEPWLEP----LLAASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRAAALRALGELPRRLS--- 179 (410)
T ss_pred hHHHHHHHH----HhcCCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccc---
Confidence 444333333 3367778899999966654211 124566677789999999999999999884432
Q ss_pred eeecChHHHHHHHhcCchHHHHHHHHHh
Q 000832 508 NKVVGLDILLSALANDQSQVAQKITRLL 535 (1263)
Q Consensus 508 ~~VV~~D~LLaRLa~Ds~~V~k~IvkLL 535 (1263)
...|...+..+++.||+..+.=|
T Consensus 180 -----~~~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 180 -----ESTLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred -----hHHHHHHHcCCCHHHHHHHHHHH
Confidence 23355556666788887777655
No 62
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.89 E-value=35 Score=44.22 Aligned_cols=143 Identities=20% Similarity=0.188 Sum_probs=99.6
Q ss_pred HHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHH
Q 000832 342 FNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLF 421 (1263)
Q Consensus 342 ~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskf 421 (1263)
...|.|-+-+-....|..||. -..++..=|.-.+|+. +.|- ..++++-|.|+.|.+|..|.. +|+
T Consensus 69 vS~~Fp~VVKNVaskn~EVKk-LVyvYLlrYAEeqpdL------ALLS--IntfQk~L~DpN~LiRasALR----vlS-- 133 (968)
T KOG1060|consen 69 VSLLFPAVVKNVASKNIEVKK-LVYVYLLRYAEEQPDL------ALLS--INTFQKALKDPNQLIRASALR----VLS-- 133 (968)
T ss_pred HHHHHHHHHHHhhccCHHHHH-HHHHHHHHHhhcCCCc------eeee--HHHHHhhhcCCcHHHHHHHHH----HHH--
Confidence 344555555555566666654 2334444444444432 1121 234689999999999999987 444
Q ss_pred HhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhc
Q 000832 422 WELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRD 501 (1263)
Q Consensus 422 WEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~ 501 (1263)
.|--+.|.-++.--+++.+.|-++=||--+-.++..+-.....+.. +|.-.|+.++.|++..|==+++-.|.+++-
T Consensus 134 --sIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~--qL~e~I~~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 134 --SIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD--QLEEVIKKLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred --hcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH--HHHHHHHHHhcCCCCcchhHHHHHHHHhch
Confidence 3445666667777889999999999999888887777654433322 688889999999999999999999888875
Q ss_pred cc
Q 000832 502 IR 503 (1263)
Q Consensus 502 ir 503 (1263)
.+
T Consensus 210 er 211 (968)
T KOG1060|consen 210 ER 211 (968)
T ss_pred hH
Confidence 54
No 63
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=89.76 E-value=0.56 Score=39.65 Aligned_cols=52 Identities=37% Similarity=0.203 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHhhCCCCc--hHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHh
Q 000832 448 EVRLATVNGIIYLLGNPLS--HEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLL 499 (1263)
Q Consensus 448 SVRlaVVeGLiaLLkn~~S--he~Lk~LLP~LksLI~DkSWRVRyAfADLLleL 499 (1263)
.||..+..++..+++.... .+.+..++|.+..++.|.+..||.+++.-|..|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5899999999887655433 456667999999999999999999999887643
No 64
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.62 E-value=3.7 Score=49.99 Aligned_cols=132 Identities=13% Similarity=0.187 Sum_probs=81.7
Q ss_pred CCChHHHHHHHhhhhHHHHHHHhhC----------C--hhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchH
Q 000832 401 DDCPDVRVVAVEGCCRILHLFWELI----------P--SATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHE 468 (1263)
Q Consensus 401 DDtPMVRRAAA~gVcriLskfWEiI----------P--~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She 468 (1263)
-+.|.+|.+|+.+++..+.++...= . .+.+...+...+...........++.++.+|.-+.-
T Consensus 446 ~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------ 519 (618)
T PF01347_consen 446 KNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------ 519 (618)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------
T ss_pred cCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC------
Confidence 3678999999999998888887762 1 223333333334432233345788999998876531
Q ss_pred HHHhHHHhhhhhcCCC---chHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhcCchHHHHHHHHHhcccCCCCCCC
Q 000832 469 VLKVLLPRLGHLMQDN---VLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALANDQSQVAQKITRLLMPSYFPLKVN 545 (1263)
Q Consensus 469 ~Lk~LLP~LksLI~Dk---SWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~Ds~~V~k~IvkLLipSfFP~k~s 545 (1263)
...+|.+...+.+. +..||.+++.- +.+++.. ..+++.+.|++.|+....+
T Consensus 520 --~~~i~~l~~~i~~~~~~~~~~R~~Ai~A---------------------lr~~~~~---~~~~v~~~l~~I~~n~~e~ 573 (618)
T PF01347_consen 520 --PESIPVLLPYIEGKEEVPHFIRVAAIQA---------------------LRRLAKH---CPEKVREILLPIFMNTTED 573 (618)
T ss_dssp --GGGHHHHHTTSTTSS-S-HHHHHHHHHT---------------------TTTGGGT----HHHHHHHHHHHHH-TTS-
T ss_pred --chhhHHHHhHhhhccccchHHHHHHHHH---------------------HHHHhhc---CcHHHHHHHHHHhcCCCCC
Confidence 13455555555555 89999999987 3344333 3356677888888888888
Q ss_pred hHHHhHHHHHHHhcChHHH
Q 000832 546 IKEACSRCVTIVKRSPVAG 564 (1263)
Q Consensus 546 ~~E~~~RCi~Lik~nP~Aa 564 (1263)
.+..+.=...|++.+|..+
T Consensus 574 ~EvRiaA~~~lm~~~P~~~ 592 (618)
T PF01347_consen 574 PEVRIAAYLILMRCNPSPS 592 (618)
T ss_dssp HHHHHHHHHHHHHT---HH
T ss_pred hhHHHHHHHHHHhcCCCHH
Confidence 8877777778888888665
No 65
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=89.23 E-value=6.2 Score=50.95 Aligned_cols=199 Identities=17% Similarity=0.132 Sum_probs=140.5
Q ss_pred HHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhc
Q 000832 320 SIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLL 399 (1263)
Q Consensus 320 klR~VLs~FHsqK~~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL 399 (1263)
.++.|+...-+++ ....+-.+.+..+.+.-..+.+|..|-.+|+..+..+.-...+.. ...-..+|..+..=+
T Consensus 273 ale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~-----~~~~~~v~p~lld~l 345 (815)
T KOG1820|consen 273 ALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF-----RKYAKNVFPSLLDRL 345 (815)
T ss_pred HHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh-----HHHHHhhcchHHHHh
Confidence 4444444434444 445555677788888888999999999999999987666655532 455666777788889
Q ss_pred CCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCC----CchHHHHhHHH
Q 000832 400 TDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNP----LSHEVLKVLLP 475 (1263)
Q Consensus 400 ~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~----~She~Lk~LLP 475 (1263)
.|--+.||-++.. ++..+.+..+-. -+...+-...++..+.+|-.+..-+...+... ...+..+.+.|
T Consensus 346 kekk~~l~d~l~~----~~d~~~ns~~l~----~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p 417 (815)
T KOG1820|consen 346 KEKKSELRDALLK----ALDAILNSTPLS----KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVP 417 (815)
T ss_pred hhccHHHHHHHHH----HHHHHHhcccHH----HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhH
Confidence 9999999999887 456555544433 23455566778888888888766665555433 34778888999
Q ss_pred hhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhc-CchHHHHHHHHHhccc
Q 000832 476 RLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALAN-DQSQVAQKITRLLMPS 538 (1263)
Q Consensus 476 ~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~-Ds~~V~k~IvkLLipS 538 (1263)
.+-..++|...-||.|....+..+.++.|..- +..+|+-+.. |.....+++..++...
T Consensus 418 ~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~-----~~k~L~~~~~~~~~~~~E~~~p~~~~~ 476 (815)
T KOG1820|consen 418 HLIKHINDTDKDVRKAALEAVAAVMKVHGEEV-----FKKLLKDLDKQDIKPKEEKLKPLLHFL 476 (815)
T ss_pred HHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHhhccchhhhhhhhcccccccc
Confidence 99999999999999999999999998888762 2334444444 3334445555544443
No 66
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.10 E-value=1.1e+02 Score=42.38 Aligned_cols=400 Identities=15% Similarity=0.126 Sum_probs=212.5
Q ss_pred CcHHHHHHHhHHHHhhhcccchhhHHHHHHhHHHHHHHHhh---ccCCHHHHHHHHHHHhhHhhcCCCcchHHHHHHhhH
Q 000832 270 ERKSMLEAYGDVLYRAWKGVEEGFREDVESGFLQVLIEGAI---HASSRAFAASIRRVLGGFVNQRTTPGVEKMLFNLTE 346 (1263)
Q Consensus 270 ~~kS~le~YGEIyFrAWK~A~gd~~eeIE~~cIQdLm~~AI---ha~s~~lAaklR~VLs~FHsqK~~kgVdemL~rLY~ 346 (1263)
.++...-.+|-|--+| .+++|-. +..++=.-+ +-|.+++-.++--+-+.....++ .-||+-+-+++.
T Consensus 973 Sk~GaAfGf~~i~~~a--------~~kl~p~-l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k-~~vd~y~neIl~ 1042 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQA--------GEKLEPY-LKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSK-KVVDEYLNEILD 1042 (1702)
T ss_pred cccchhhchHHHHHHH--------HHhhhhH-HHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChH-HHHHHHHHHHHH
Confidence 4455555566665555 4555532 333332222 34455444444333333333321 246666666666
Q ss_pred HHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCC
Q 000832 347 PVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIP 426 (1263)
Q Consensus 347 PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP 426 (1263)
-++-.+..-.| .||-++|.-+.+.--..+.+. +...|-+....+.+-..|=.-.||.| +.+.|+.|++..-.+-
T Consensus 1043 eLL~~lt~kew-RVReasclAL~dLl~g~~~~~----~~e~lpelw~~~fRvmDDIKEsVR~a-a~~~~~~lsKl~vr~~ 1116 (1702)
T KOG0915|consen 1043 ELLVNLTSKEW-RVREASCLALADLLQGRPFDQ----VKEKLPELWEAAFRVMDDIKESVREA-ADKAARALSKLCVRIC 1116 (1702)
T ss_pred HHHHhccchhH-HHHHHHHHHHHHHHcCCChHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhc
Confidence 66666665555 999999999999877765443 44455555655555554445566665 4567888887654332
Q ss_pred ----hhHHHHHHHHHHHHhcc----CCCchHHHHHHHHHHHhhCCCCc--hHHHHhHHHhhhhhcCCCchHHHHHHHHHH
Q 000832 427 ----SATITKIITKIFDDNSH----DLCNEVRLATVNGIIYLLGNPLS--HEVLKVLLPRLGHLMQDNVLSVRLAMADLL 496 (1263)
Q Consensus 427 ----~~~I~slL~~If~~LAk----DsQDSVRlaVVeGLiaLLkn~~S--he~Lk~LLP~LksLI~DkSWRVRyAfADLL 496 (1263)
.....+.+..+.--|.. -+..+||-..+..++-|.+.-.. .+..-.|.|.+.+...--...|=-..+-.+
T Consensus 1117 d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1117 DVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred ccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh
Confidence 22333333333333322 33578999999999999886433 233344666666665555555544444333
Q ss_pred HHh----------hcccC----------CceeeecChHHHHHHHhcCc-------h--HHHHHHHHHhcccCCCCCCCh-
Q 000832 497 LLL----------RDIRT----------FQFNKVVGLDILLSALANDQ-------S--QVAQKITRLLMPSYFPLKVNI- 546 (1263)
Q Consensus 497 leL----------k~irg----------iKF~~VV~~D~LLaRLa~Ds-------~--~V~k~IvkLLipSfFP~k~s~- 546 (1263)
..+ ..+++ +++.|+..+++++-|+..-. . .++.-|+.|-.. .|....+
T Consensus 1197 ~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r--~~~emtP~ 1274 (1702)
T KOG0915|consen 1197 INIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQR--LGSEMTPY 1274 (1702)
T ss_pred hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHH--hccccCcc
Confidence 221 11111 45677777788877765431 1 233333333332 2332221
Q ss_pred -HHHhHHHHHHHhcChHHHHHHHHHHhhc---CCChHHHHHHHHHHHHhhccCCCCChhHHHHHHH-HHHHHHhhhhhh-
Q 000832 547 -KEACSRCVTIVKRSPVAGARFCEFAVSE---GAPLESLVELVTVFIRLVLSHDKLDEDQIEGLLA-AVSYLCKDIARE- 620 (1263)
Q Consensus 547 -~E~~~RCi~Lik~nP~Aa~~Fy~~a~~~---~a~~~~l~~Li~~ll~~~ls~~k~~~e~~eg~~~-a~a~L~~~L~~~- 620 (1263)
.--.+-|+..++.--.+.++.|-+|..+ -.+.++..+++..++.|.+-++...--..=+... -..|--.-|-++
T Consensus 1275 sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~a 1354 (1702)
T KOG0915|consen 1275 SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYA 1354 (1702)
T ss_pred hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhH
Confidence 1234667777776556777778777643 2566899999999999999765442211111111 111111111111
Q ss_pred ----------HhHH-HHHHhHhhhhhHHHHHHhhccccccch-------hhhhhcccCCCchhHHHHHHHh-hhhhcCCC
Q 000832 621 ----------QCYK-NALKELFANDKVKSLFAAASTGRARSS-------VFEIVSTVSPDNVVGLLEQCMG-LISKCKGL 681 (1263)
Q Consensus 621 ----------~~~k-~~l~~l~~g~~l~~ll~~a~t~~a~sa-------~~~I~s~~~~~~~~~~~~~c~~-~~~~~~g~ 681 (1263)
+++- .+..+| -+++|+.++++.+-.- +.-|.-.+-.++.=.+...|-. +.+.|-|+
T Consensus 1355 saILPLiFLa~~ee~Ka~q~L-----w~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~ 1429 (1702)
T KOG0915|consen 1355 SAILPLIFLAMHEEEKANQEL-----WNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGL 1429 (1702)
T ss_pred HHHHHHHHHHHhHHHHHHHHH-----HHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccc
Confidence 1111 122333 3566777766654322 3334444444444455566665 56667777
Q ss_pred ChhhhhHHHHH
Q 000832 682 SEDEERQAEVR 692 (1263)
Q Consensus 682 ~~~~~~q~~~~ 692 (1263)
+......--++
T Consensus 1430 sss~~~p~ilk 1440 (1702)
T KOG0915|consen 1430 SSSAPIPVILK 1440 (1702)
T ss_pred cccCChHHHHH
Confidence 76655433333
No 67
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.66 E-value=87 Score=40.57 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=71.4
Q ss_pred HHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcC-CCchHHHHHHHHHHHHhhcccCCceeeecChHHHH
Q 000832 439 DDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQ-DNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILL 517 (1263)
Q Consensus 439 ~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~-DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~LL 517 (1263)
.++..+.-...|-+++|.++.|+-...+|+.+++-...|-+.+. ++.-.||..++|+|-.+++.-+.|-. ++++|
T Consensus 335 g~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~I----V~elL 410 (938)
T KOG1077|consen 335 GQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQI----VAELL 410 (938)
T ss_pred HHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHH----HHHHH
Confidence 34455667889999999999999999999999988888888888 99999999999999999988776632 46666
Q ss_pred HHHhcCchHHHHHHH
Q 000832 518 SALANDQSQVAQKIT 532 (1263)
Q Consensus 518 aRLa~Ds~~V~k~Iv 532 (1263)
.-|..-..++|++|+
T Consensus 411 qYL~tAd~sireeiv 425 (938)
T KOG1077|consen 411 QYLETADYSIREEIV 425 (938)
T ss_pred HHHhhcchHHHHHHH
Confidence 666554445555543
No 68
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=88.49 E-value=5.4 Score=46.41 Aligned_cols=122 Identities=18% Similarity=0.156 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCC
Q 000832 385 DTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNP 464 (1263)
Q Consensus 385 d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~ 464 (1263)
-.|++..|..+.+.|.++...-|.+|-..+-. =+..-.++| ....+|..-+..-.++ .-.+=...+..+.+|+.|+
T Consensus 173 S~Elq~yf~~It~a~~~~~~~~r~~aL~sL~t-D~gl~~LlP--yf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~ 248 (343)
T cd08050 173 SKELQLYFEEITEALVGSNEEKRREALQSLRT-DPGLQQLLP--YFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNP 248 (343)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcc-CCCchhhhh--HHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCC
Confidence 36788889888899999998888888874210 001111111 1222222222211111 1112222366777888887
Q ss_pred Cc--hHHHHhHHHhhhhhc----------CCCchHHHHHHHHHHHHhhcccCCceeee
Q 000832 465 LS--HEVLKVLLPRLGHLM----------QDNVLSVRLAMADLLLLLRDIRTFQFNKV 510 (1263)
Q Consensus 465 ~S--he~Lk~LLP~LksLI----------~DkSWRVRyAfADLLleLk~irgiKF~~V 510 (1263)
.- +..++.++|.+..++ .|..|..|..+|+++..|++..+-.+..+
T Consensus 249 ~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l 306 (343)
T cd08050 249 NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTL 306 (343)
T ss_pred CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcH
Confidence 75 778888999887765 57889999999999999887777666554
No 69
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.30 E-value=16 Score=48.59 Aligned_cols=165 Identities=21% Similarity=0.197 Sum_probs=114.4
Q ss_pred chHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhc---CCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHh
Q 000832 336 GVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLF---PLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVE 412 (1263)
Q Consensus 336 gVdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AF---Plvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~ 412 (1263)
.....+.+...-+|--+ +--|-..|.+|-.++..+- -..++.. |-....++..+..+...+..|.++++..-+-
T Consensus 731 e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~--e~~~~~lnefl~~Isagl~gd~~~~~as~Iv 807 (1176)
T KOG1248|consen 731 EHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGN--EPASAILNEFLSIISAGLVGDSTRVVASDIV 807 (1176)
T ss_pred HHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccc--cchHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 44455555555555544 7778888988887776554 2222211 1123456666666677777888888877677
Q ss_pred hhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCc---hHHHHhHHHhhhhhcCCCchHHH
Q 000832 413 GCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLS---HEVLKVLLPRLGHLMQDNVLSVR 489 (1263)
Q Consensus 413 gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~S---he~Lk~LLP~LksLI~DkSWRVR 489 (1263)
++..++.+|-+.+..+...++|..+---|+ -....||-++|..+..+...... ...+..|||.+..++||..-.||
T Consensus 808 ai~~il~e~~~~ld~~~l~~li~~V~~~L~-s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r 886 (1176)
T KOG1248|consen 808 AITHILQEFKNILDDETLEKLISMVCLYLA-SNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVR 886 (1176)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHH
Confidence 788899999999999999888876665554 45677888888877776654433 33444589999999999999999
Q ss_pred HHHHHHHHHhhcccC
Q 000832 490 LAMADLLLLLRDIRT 504 (1263)
Q Consensus 490 yAfADLLleLk~irg 504 (1263)
..+-.+|..+...+|
T Consensus 887 ~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 887 KKVRLLLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHHHHHHhC
Confidence 998888666654443
No 70
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=87.02 E-value=15 Score=44.76 Aligned_cols=141 Identities=17% Similarity=0.171 Sum_probs=93.1
Q ss_pred hhhcCC----CChHHHHHHHhhhhHHHHHHHhhCCh---hHHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHhhCCCC
Q 000832 396 EKLLTD----DCPDVRVVAVEGCCRILHLFWELIPS---ATITKIITKIFDDNSH---DLCNEVRLATVNGIIYLLGNPL 465 (1263)
Q Consensus 396 ~~LL~D----DtPMVRRAAA~gVcriLskfWEiIP~---~~I~slL~~If~~LAk---DsQDSVRlaVVeGLiaLLkn~~ 465 (1263)
..|+.+ ..|.+|..|..++.....++...-+. ..+.+++.++.+.|.. +.....+...+++|. |..
T Consensus 399 ~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG----N~g 474 (574)
T smart00638 399 FELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG----NAG 474 (574)
T ss_pred HHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh----ccC
Confidence 566665 48899999999988888877766542 3344555555554433 222345666676655 444
Q ss_pred chHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhcCchHHHHHHHHHhcccCCCCCCC
Q 000832 466 SHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALANDQSQVAQKITRLLMPSYFPLKVN 545 (1263)
Q Consensus 466 She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~Ds~~V~k~IvkLLipSfFP~k~s 545 (1263)
....+..+.|.+. .-.+.+.+||.+++.- +.+++.-. -+.+.+.|++.|.-...+
T Consensus 475 ~~~~i~~l~~~l~-~~~~~~~~iR~~Av~A---------------------lr~~a~~~---p~~v~~~l~~i~~n~~e~ 529 (574)
T smart00638 475 HPSSIKVLEPYLE-GAEPLSTFIRLAAILA---------------------LRNLAKRD---PRKVQEVLLPIYLNRAEP 529 (574)
T ss_pred ChhHHHHHHHhcC-CCCCCCHHHHHHHHHH---------------------HHHHHHhC---chHHHHHHHHHHcCCCCC
Confidence 4455555555554 2345688999999998 44444321 135567788888877888
Q ss_pred hHHHhHHHHHHHhcChHHHH
Q 000832 546 IKEACSRCVTIVKRSPVAGA 565 (1263)
Q Consensus 546 ~~E~~~RCi~Lik~nP~Aa~ 565 (1263)
.+..+.=+..|++.+|.++.
T Consensus 530 ~EvRiaA~~~lm~t~P~~~~ 549 (574)
T smart00638 530 PEVRMAAVLVLMETKPSVAL 549 (574)
T ss_pred hHHHHHHHHHHHhcCCCHHH
Confidence 88888888889999887763
No 71
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.93 E-value=13 Score=47.47 Aligned_cols=214 Identities=16% Similarity=0.091 Sum_probs=139.4
Q ss_pred HHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHH
Q 000832 339 KMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRIL 418 (1263)
Q Consensus 339 emL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriL 418 (1263)
+.+..+|-+++.-..+.+ ..----|.|+...|....|+. .-..-+. +.+=+.|+.||+|.-|..-.|
T Consensus 45 ~DvSslF~dvvk~~~T~d--lelKKlvyLYl~nYa~~~P~~-----a~~avnt---~~kD~~d~np~iR~lAlrtm~--- 111 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQTRD--LELKKLVYLYLMNYAKGKPDL-----AILAVNT---FLKDCEDPNPLIRALALRTMG--- 111 (734)
T ss_pred cchHhhhHHHHhhcccCC--chHHHHHHHHHHHhhccCchH-----HHhhhhh---hhccCCCCCHHHHHHHhhcee---
Confidence 667889999998877776 333446889999999988853 1222233 478899999999999997532
Q ss_pred HHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHH
Q 000832 419 HLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLL 498 (1263)
Q Consensus 419 skfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLle 498 (1263)
.+.-+.++..+..=+....+|+.+-||..+.-|+..+-.-...+..-.-+++.++.++.|.+.-|=.++...|.+
T Consensus 112 -----~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~e 186 (734)
T KOG1061|consen 112 -----CLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSE 186 (734)
T ss_pred -----eEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHH
Confidence 233343444443334445699999999999999888876655555556699999999999999998888888888
Q ss_pred hhcccCC-ceeeecC--hHHHHHHHhcCchHHHHHHHHHhcccCCCCCC-ChHHHhHHHHH-HHhcCh---HHHHHHHHH
Q 000832 499 LRDIRTF-QFNKVVG--LDILLSALANDQSQVAQKITRLLMPSYFPLKV-NIKEACSRCVT-IVKRSP---VAGARFCEF 570 (1263)
Q Consensus 499 Lk~irgi-KF~~VV~--~D~LLaRLa~Ds~~V~k~IvkLLipSfFP~k~-s~~E~~~RCi~-Lik~nP---~Aa~~Fy~~ 570 (1263)
|.+.-.- ....+.+ .+.++.++..-..--+-.|=+.| --|+|.+. ...+-|+||.- |...|+ .++.+++.+
T Consensus 187 I~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l-~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 187 IHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCL-AEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred HHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHH-HhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHH
Confidence 7766542 2222221 24556666554321111122222 23777774 56677899864 444444 345555544
Q ss_pred H
Q 000832 571 A 571 (1263)
Q Consensus 571 a 571 (1263)
.
T Consensus 266 ~ 266 (734)
T KOG1061|consen 266 L 266 (734)
T ss_pred H
Confidence 4
No 72
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=85.16 E-value=20 Score=44.79 Aligned_cols=228 Identities=15% Similarity=0.078 Sum_probs=129.1
Q ss_pred hhhHHHHHHhHHHHHHHHhhccCCHHHH---HHHHHHHhhHhhcCCCc----chHHHHHHhhHHHHHHhhcCCchHHH--
Q 000832 291 EGFREDVESGFLQVLIEGAIHASSRAFA---ASIRRVLGGFVNQRTTP----GVEKMLFNLTEPVMFRSLQAANSNVR-- 361 (1263)
Q Consensus 291 gd~~eeIE~~cIQdLm~~AIha~s~~lA---aklR~VLs~FHsqK~~k----gVdemL~rLY~PILwRLLka~NftVR-- 361 (1263)
.++...+--.|+|+..++++..|- -+- .-.-.+...||..|... -.++.|..+|+=...-.-.++.-..|
T Consensus 306 nPvl~lL~Ifcv~~~~~acLSlpQ-~~e~~~~~t~k~I~~F~eS~e~~rllll~~~ll~n~~e~~~~~~~nq~fI~a~~~ 384 (743)
T COG5369 306 NPVLVLLGIFCVQDDVQACLSLPQ-LFEKDIELTSKIIDRFHESKESERLLLLTPELLFNMYELTAGLEENQRFIAARSK 384 (743)
T ss_pred CchheehhHHHHHHHHHHHhccch-hcchheeehHHHHHHHHhcChhhhhhhcCHHHHHhHHHHhhhhhhhhhhhHHHHH
Confidence 455666666899999999876551 111 11123444599887644 56788888888766544443322222
Q ss_pred --HHHHHHhHhhcCCCCCccchHHHHHHHHH-----------------HHHHHhhhcCCCChHHHHHHHhhhhHHHHHHH
Q 000832 362 --QNALHLLLDLFPLEDPDATKEVKDTLFDK-----------------QFFLLEKLLTDDCPDVRVVAVEGCCRILHLFW 422 (1263)
Q Consensus 362 --~SA~~LF~~AFPlvdpd~~rEe~d~EL~k-----------------QF~~L~~LL~DDtPMVRRAAA~gVcriLskfW 422 (1263)
-++++-+..--|...++. .-..--++.+ .-+.|.++|.||..||--.+...+|...-+|-
T Consensus 385 ~~e~~t~~~~~~vn~~~d~l-~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fs 463 (743)
T COG5369 385 MIESVTGTFKTKVNRKQDDL-DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFS 463 (743)
T ss_pred HHHhhhhhhhccCCccchHH-HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeecc
Confidence 233333333333322211 0001111111 12457888999888888887777776554444
Q ss_pred hhCChhHHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHhhCCCCchHHHHh----HHHhhhhhcCCCchHHHHHHHHHHH
Q 000832 423 ELIPSATITKIITKIFDDN-SHDLCNEVRLATVNGIIYLLGNPLSHEVLKV----LLPRLGHLMQDNVLSVRLAMADLLL 497 (1263)
Q Consensus 423 EiIP~~~I~slL~~If~~L-AkDsQDSVRlaVVeGLiaLLkn~~She~Lk~----LLP~LksLI~DkSWRVRyAfADLLl 497 (1263)
.+-..-.-..+|..+++-+ ++|+ +.|.-.+=++.-+.-|-+..+.++. -...+..+++|+.|.|...+.+.|.
T Consensus 464 nL~~~fL~~~iIdvl~~~v~sKDd--aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilr 541 (743)
T COG5369 464 NLGAGFLEKSIIDVLVNLVMSKDD--ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILR 541 (743)
T ss_pred chHHHHHHhhHHHHHHHHhhcchh--hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHH
Confidence 3332222233333333333 3443 5666666667666655544433332 3356778999999999999999998
Q ss_pred Hhhc--ccCCc----eeeecChHHHHHHHhc
Q 000832 498 LLRD--IRTFQ----FNKVVGLDILLSALAN 522 (1263)
Q Consensus 498 eLk~--irgiK----F~~VV~~D~LLaRLa~ 522 (1263)
.+.- ..+.+ |.+.+|+.-|.++|++
T Consensus 542 Nftc~~~knEkskdv~~K~~p~~ylfk~l~~ 572 (743)
T COG5369 542 NFTCDTSKNEKSKDVFIKATPRRYLFKRLID 572 (743)
T ss_pred hcccccccccccceeEEecChHHHHHHHHHH
Confidence 8765 33344 5566788767666654
No 73
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=84.82 E-value=54 Score=42.48 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=72.4
Q ss_pred hcCCCChHHHHHHHhhhhHHHHHHHh-hCChhHHHHHHHHHHHHhccCCC-chHHHHHHHHHHHhhCCCCchHHHHhHHH
Q 000832 398 LLTDDCPDVRVVAVEGCCRILHLFWE-LIPSATITKIITKIFDDNSHDLC-NEVRLATVNGIIYLLGNPLSHEVLKVLLP 475 (1263)
Q Consensus 398 LL~DDtPMVRRAAA~gVcriLskfWE-iIP~~~I~slL~~If~~LAkDsQ-DSVRlaVVeGLiaLLkn~~She~Lk~LLP 475 (1263)
=+.|+.|..|+-++.-+.++.+..-. -|..-.-..++..|...+..|++ |+|=+.++-..+.-+.. -..+.+.++.-
T Consensus 724 ~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~-r~kpylpqi~s 802 (1172)
T KOG0213|consen 724 DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG-RVKPYLPQICS 802 (1172)
T ss_pred hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh-ccccchHHHHH
Confidence 36799999999999876666553211 12233445566778888888775 77766665544332221 01445566777
Q ss_pred hhhhhcCCCchHHHHHHHHHHHHhhcccC
Q 000832 476 RLGHLMQDNVLSVRLAMADLLLLLRDIRT 504 (1263)
Q Consensus 476 ~LksLI~DkSWRVRyAfADLLleLk~irg 504 (1263)
.+...++.+|..||.-+||+...++.+..
T Consensus 803 tiL~rLnnksa~vRqqaadlis~la~Vlk 831 (1172)
T KOG0213|consen 803 TILWRLNNKSAKVRQQAADLISSLAKVLK 831 (1172)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999886653
No 74
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.44 E-value=27 Score=46.64 Aligned_cols=242 Identities=16% Similarity=0.115 Sum_probs=145.9
Q ss_pred hhhcccchhhHHHHHHhHHHHHHHHhhccC------CHHHHHHHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhcCCc
Q 000832 284 RAWKGVEEGFREDVESGFLQVLIEGAIHAS------SRAFAASIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAAN 357 (1263)
Q Consensus 284 rAWK~A~gd~~eeIE~~cIQdLm~~AIha~------s~~lAaklR~VLs~FHsqK~~kgVdemL~rLY~PILwRLLka~N 357 (1263)
.-|-+--+.+...|=+ .+|--++...--+ .+.+-.-+++.|+-=|. .++...-..|++++.--+.|.....-
T Consensus 159 ~~~e~~r~~~l~~i~~-lLqinlskL~~~s~~~e~flsl~~~~~yrllEn~~~-~k~~~t~~ai~~ilg~s~k~~~~~~t 236 (1251)
T KOG0414|consen 159 FNWEKQRNKLLCLIAQ-LLQINLSKLWLTSVEDEDFLSLIVDPIYRLLENEHV-NKNSSTKDAIFRILGSSVKRYNQCST 236 (1251)
T ss_pred cccccccchHHHHHHH-HHHhhHHHhcCCChhHHHHHHHHHHHHHHHhccccc-ccchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4566656666666554 3554444433111 12334456666655222 33566677788888888888888888
Q ss_pred hHHHHHHHH--------HhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHH-HHHHHhhhhHHHHHHHhhCChh
Q 000832 358 SNVRQNALH--------LLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDV-RVVAVEGCCRILHLFWELIPSA 428 (1263)
Q Consensus 358 ftVR~SA~~--------LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMV-RRAAA~gVcriLskfWEiIP~~ 428 (1263)
|.+|.==+- ..+++--++..+. -.-..+..+.+=..+.+|+= +.+..++++..|..+.+.+|.=
T Consensus 237 ~~~rilq~l~~fehl~~~~ad~v~l~~sky-------~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l 309 (1251)
T KOG0414|consen 237 FASRILQNLRYFEHLAVHVADAVTLVRSKY-------GSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKL 309 (1251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHH
Confidence 877753221 1111111111110 01112233455566666766 6677777999999999999854
Q ss_pred HHHHHHHHHHHHhccCC-CchHHHHHHHHHHHhhCCCC--------chHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHh
Q 000832 429 TITKIITKIFDDNSHDL-CNEVRLATVNGIIYLLGNPL--------SHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLL 499 (1263)
Q Consensus 429 ~I~slL~~If~~LAkDs-QDSVRlaVVeGLiaLLkn~~--------She~Lk~LLP~LksLI~DkSWRVRyAfADLLleL 499 (1263)
.+ ..+..+++ + -|. +-..|.++++.+.-+.-... +..+-..++..+..-++|-|.=||+-+.+.+.+|
T Consensus 310 ~~-~~l~~lv~-l-ld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l 386 (1251)
T KOG0414|consen 310 ML-RQLTLLVD-L-LDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRL 386 (1251)
T ss_pred HH-HHHHHHHH-h-cCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 33 34555555 3 354 56799999998876642211 1222223777888889999999999999999999
Q ss_pred hcccCCceeeecC-hHHHHHHHhcCchHHHHHHHHHhcc
Q 000832 500 RDIRTFQFNKVVG-LDILLSALANDQSQVAQKITRLLMP 537 (1263)
Q Consensus 500 k~irgiKF~~VV~-~D~LLaRLa~Ds~~V~k~IvkLLip 537 (1263)
+....+-....=. ....+.||++-+.-||+..++|+.+
T Consensus 387 ~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~ 425 (1251)
T KOG0414|consen 387 FQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSS 425 (1251)
T ss_pred HHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 8766543221111 1233557777777888888887765
No 75
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=84.07 E-value=7.1 Score=50.65 Aligned_cols=145 Identities=19% Similarity=0.129 Sum_probs=102.4
Q ss_pred HHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHH
Q 000832 342 FNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLF 421 (1263)
Q Consensus 342 ~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskf 421 (1263)
+---+|++.+..+.+--.+|.|-...+.-+-.+++.. ..-.++..++.+|.+-+.=+.+.||..+-.- +..+
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~----vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~----i~~~ 936 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQ----VLLPQFPMLLPLLLQALSMPDVIVRVSTLRT----IPML 936 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHH----hhccchhhHHHHHHHhcCCCccchhhhHhhh----hhHH
Confidence 4455788888888666788888877777776666442 2445677778888888888999999888764 3333
Q ss_pred HhhCChhHHHHHHH---HHHHHhccCCC---chHHHHHHHHHHHhhC-CCCc--hHHHHhHHHhhhhhcCCCchHHHHHH
Q 000832 422 WELIPSATITKIIT---KIFDDNSHDLC---NEVRLATVNGIIYLLG-NPLS--HEVLKVLLPRLGHLMQDNVLSVRLAM 492 (1263)
Q Consensus 422 WEiIP~~~I~slL~---~If~~LAkDsQ---DSVRlaVVeGLiaLLk-n~~S--he~Lk~LLP~LksLI~DkSWRVRyAf 492 (1263)
-...+ +.+.+.+. |.+-.|..|.. ..||+.+++|+.++.. .|.. +.....++..|...+.|+--.||..+
T Consensus 937 l~~~~-tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eA 1015 (1030)
T KOG1967|consen 937 LTESE-TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEA 1015 (1030)
T ss_pred HHhcc-ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHH
Confidence 32222 22233333 34445666654 5899999999999998 4432 55556688888888999999999999
Q ss_pred HHH
Q 000832 493 ADL 495 (1263)
Q Consensus 493 ADL 495 (1263)
++.
T Consensus 1016 v~t 1018 (1030)
T KOG1967|consen 1016 VDT 1018 (1030)
T ss_pred HHH
Confidence 885
No 76
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=83.16 E-value=18 Score=49.34 Aligned_cols=141 Identities=18% Similarity=0.264 Sum_probs=93.8
Q ss_pred HhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHH-HHHHHHHHHhccCCCchHHHHHHHHHHH-hhCCCCchHHHHh
Q 000832 395 LEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATIT-KIITKIFDDNSHDLCNEVRLATVNGIIY-LLGNPLSHEVLKV 472 (1263)
Q Consensus 395 L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~-slL~~If~~LAkDsQDSVRlaVVeGLia-LLkn~~She~Lk~ 472 (1263)
+...+..+.+.||.-|.+ +|+...+.=|.=... +....+..++ .|++.+||-++|+-+.. ++-. .+...+
T Consensus 821 Il~~l~e~~ialRtkAlK----clS~ive~Dp~vL~~~dvq~~Vh~R~-~DssasVREAaldLvGrfvl~~---~e~~~q 892 (1692)
T KOG1020|consen 821 ILSVLGENAIALRTKALK----CLSMIVEADPSVLSRPDVQEAVHGRL-NDSSASVREAALDLVGRFVLSI---PELIFQ 892 (1692)
T ss_pred HHHHhcCchHHHHHHHHH----HHHHHHhcChHhhcCHHHHHHHHHhh-ccchhHHHHHHHHHHhhhhhcc---HHHHHH
Confidence 356688999999999998 566655543321111 2223444554 79999999999996642 3333 445566
Q ss_pred HHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecCh-HHHHHHHhcCchHHHHHHHHHhcccCC-CCCC
Q 000832 473 LLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGL-DILLSALANDQSQVAQKITRLLMPSYF-PLKV 544 (1263)
Q Consensus 473 LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~-D~LLaRLa~Ds~~V~k~IvkLLipSfF-P~k~ 544 (1263)
....|..-|.|.+--||.-+...+.+++.. .-.|..++.+ -.+|.|..+|...|.+-..+-+.+-+| |...
T Consensus 893 yY~~i~erIlDtgvsVRKRvIKIlrdic~e-~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~ 965 (1692)
T KOG1020|consen 893 YYDQIIERILDTGVSVRKRVIKILRDICEE-TPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPE 965 (1692)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHHh-CCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCc
Confidence 777777789999999999999999999965 3456666554 345667777766684444444555444 5443
No 77
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.13 E-value=57 Score=43.93 Aligned_cols=264 Identities=16% Similarity=0.173 Sum_probs=143.8
Q ss_pred HHHhhccccccCccchhHHHHHhcCCHHHHHHHHHHHHhhhccCcHHHHHHHhHHHHhhhcccch--hhHHHHHHhHHHH
Q 000832 227 IRCVISPLYLKTEDGRKFLAFLFGLSKPMLKDVLAMIKSQISFERKSMLEAYGDVLYRAWKGVEE--GFREDVESGFLQV 304 (1263)
Q Consensus 227 Lrc~~sP~FlkseEGrrFLAflFgl~~~Lik~ih~tIKnQLp~~~kS~le~YGEIyFrAWK~A~g--d~~eeIE~~cIQd 304 (1263)
|++..+-.+..+++---|++.+. +-+-..+.|+.-.-+++...++-.|+-.+-+.-+- .+...|=+ +||.
T Consensus 176 LqinlskL~~~s~~~e~flsl~~-------~~~yrllEn~~~~k~~~t~~ai~~ilg~s~k~~~~~~t~~~rilq-~l~~ 247 (1251)
T KOG0414|consen 176 LQINLSKLWLTSVEDEDFLSLIV-------DPIYRLLENEHVNKNSSTKDAIFRILGSSVKRYNQCSTFASRILQ-NLRY 247 (1251)
T ss_pred HHhhHHHhcCCChhHHHHHHHHH-------HHHHHHhcccccccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHH
Confidence 44444444444444444444432 23344445544445577777877777777776542 33444443 5777
Q ss_pred HHHHhhccCCHHHHHHHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHH
Q 000832 305 LIEGAIHASSRAFAASIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVK 384 (1263)
Q Consensus 305 Lm~~AIha~s~~lAaklR~VLs~FHsqK~~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~ 384 (1263)
+=+.+.|... .+-.+=+.| .. ..+..-|+.-..+..-...+++....++.+--.. .+-.
T Consensus 248 fehl~~~~ad-----~v~l~~sky----~~-------~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~el-----S~~~ 306 (1251)
T KOG0414|consen 248 FEHLAVHVAD-----AVTLVRSKY----GS-------VSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVEL-----SERV 306 (1251)
T ss_pred HHHHHHHHHH-----HHHHHHHhc----cc-------HHHHHHHHHHhcccchhcccccchhhHHHHHHHH-----HHHh
Confidence 7777776641 111111111 01 1122222222222222222332222222221111 1112
Q ss_pred HHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHh-----hCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Q 000832 385 DTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWE-----LIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIY 459 (1263)
Q Consensus 385 d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWE-----iIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLia 459 (1263)
-..+.++...|.+|+.-+..+.|.+-.+-+.......-. .... .+...+..++..-..|.+.-||.-|++++..
T Consensus 307 P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk-~~r~~~le~l~erl~Dvsa~vRskVLqv~~~ 385 (1251)
T KOG0414|consen 307 PKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSK-SLRDELLELLRERLLDVSAYVRSKVLQVFRR 385 (1251)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHH-HHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 355667777788999999999999887743322222211 1111 2333344566666689999999999999999
Q ss_pred hhCCCCc-hHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhc
Q 000832 460 LLGNPLS-HEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALAN 522 (1263)
Q Consensus 460 LLkn~~S-he~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~ 522 (1263)
|.+.... ......++--...-+.|+|-=||+++++++..+-. .+-|...-..|++.+.++.
T Consensus 386 l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~--~~Pfs~~~~~~~~~~~~E~ 447 (1251)
T KOG0414|consen 386 LFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLD--RHPFSSELRSDDLRAKLEK 447 (1251)
T ss_pred HHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHh--cCCchhhhcchhhhhhHHH
Confidence 8875443 22333455555556889999999999999887652 4556666666665554444
No 78
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.74 E-value=36 Score=42.07 Aligned_cols=203 Identities=15% Similarity=0.076 Sum_probs=119.1
Q ss_pred hhhcccchhhHHHHHHhHHHHHHHHhhccCCHHHH------------HHHHHHHhhHhhcCCCcchH--HHHHHhhHHHH
Q 000832 284 RAWKGVEEGFREDVESGFLQVLIEGAIHASSRAFA------------ASIRRVLGGFVNQRTTPGVE--KMLFNLTEPVM 349 (1263)
Q Consensus 284 rAWK~A~gd~~eeIE~~cIQdLm~~AIha~s~~lA------------aklR~VLs~FHsqK~~kgVd--emL~rLY~PIL 349 (1263)
+-|+-.+...-.++--.-+|.+|..--|..-+.+. ......-+.|.+-++.+.++ ..+...|.-+.
T Consensus 185 ~~w~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la 264 (533)
T KOG2032|consen 185 RRWSQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLA 264 (533)
T ss_pred chhhhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHH
Confidence 45666654444444434467776655543322221 11222233333334445566 66677777777
Q ss_pred HHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhH
Q 000832 350 FRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSAT 429 (1263)
Q Consensus 350 wRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~ 429 (1263)
.|+ +.++.++|..||.-+...+... |+.-+-.....+...+ ..|+.|++-.|=-.|.+++..++.+ +....
T Consensus 265 ~ka-~dp~a~~r~~a~r~L~~~as~~-P~kv~th~~~~ldaii---~gL~D~~~~~V~leam~~Lt~v~~~----~~~~~ 335 (533)
T KOG2032|consen 265 NKA-TDPSAKSRGMACRGLGNTASGA-PDKVRTHKTTQLDAII---RGLYDDLNEEVQLEAMKCLTMVLEK----ASNDD 335 (533)
T ss_pred Hhc-cCchhHHHHHHHHHHHHHhccC-cHHHHHhHHHHHHHHH---HHHhcCCccHHHHHHHHHHHHHHHh----hhhcc
Confidence 765 4556799999999888877775 4444445555666666 8889999999999999876555553 33323
Q ss_pred HHHHHHHHH---HHhccCCCchHHHHHHHHHHHhhC---CCCchHHHHhHHHhhhh---hcCCCchHHHHHHHHH
Q 000832 430 ITKIITKIF---DDNSHDLCNEVRLATVNGIIYLLG---NPLSHEVLKVLLPRLGH---LMQDNVLSVRLAMADL 495 (1263)
Q Consensus 430 I~slL~~If---~~LAkDsQDSVRlaVVeGLiaLLk---n~~She~Lk~LLP~Lks---LI~DkSWRVRyAfADL 495 (1263)
....+.++. ..+=.|.+|++|.+++--+..+++ .+......+++...+.. -++|+.+.|=.|+=..
T Consensus 336 l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~ 410 (533)
T KOG2032|consen 336 LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSE 410 (533)
T ss_pred hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHH
Confidence 333333332 334467789999999766555554 33333333334433333 4788988887776554
No 79
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=82.73 E-value=1.1e+02 Score=36.33 Aligned_cols=129 Identities=13% Similarity=0.180 Sum_probs=74.8
Q ss_pred HHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHH
Q 000832 361 RQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDD 440 (1263)
Q Consensus 361 R~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~ 440 (1263)
......||..+.--.+++..-...++.+++.. .-.+..+.+.+|.++++.+|-++.| |. +.+...+++..+.+.
T Consensus 164 ~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~---~~~~~~~~~~~~~~~~~~la~LvNK-~~--~~~~l~~~l~~~~~~ 237 (415)
T PF12460_consen 164 QSRLVILFSAILCSLRKDVSLPDLEELLQSLL---NLALSSEDEFSRLAALQLLASLVNK-WP--DDDDLDEFLDSLLQS 237 (415)
T ss_pred cccHHHHHHHHHHcCCcccCccCHHHHHHHHH---HHHHcCCChHHHHHHHHHHHHHHcC-CC--ChhhHHHHHHHHHhh
Confidence 33444555555555555432112233343333 3334445599999999987777776 32 223566666666666
Q ss_pred hccCCCchHHHHHHHHHHHhhCCC--CchHHHHhHHHhhhhhcCCCchHHHHHHHHHHH
Q 000832 441 NSHDLCNEVRLATVNGIIYLLGNP--LSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLL 497 (1263)
Q Consensus 441 LAkDsQDSVRlaVVeGLiaLLkn~--~She~Lk~LLP~LksLI~DkSWRVRyAfADLLl 497 (1263)
+.......-|..+++.+.-+.+-. .-|+....++..+..++.| +.+...+|+.|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~ 294 (415)
T PF12460_consen 238 ISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFG 294 (415)
T ss_pred hcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHh
Confidence 644445667777777765554421 1145555566666666766 667777777643
No 80
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=82.16 E-value=13 Score=40.27 Aligned_cols=108 Identities=18% Similarity=0.162 Sum_probs=74.5
Q ss_pred HhhhcCCCChHHHHHHHhhhhHHHHH------HHhhCC-------------hhHHHHHHHHHHHHhccCCCchHHHHHHH
Q 000832 395 LEKLLTDDCPDVRVVAVEGCCRILHL------FWELIP-------------SATITKIITKIFDDNSHDLCNEVRLATVN 455 (1263)
Q Consensus 395 L~~LL~DDtPMVRRAAA~gVcriLsk------fWEiIP-------------~~~I~slL~~If~~LAkDsQDSVRlaVVe 455 (1263)
+.-++.|+.|.||.+|+.-+..+|.. +.+.-. ...+.++=..++..|.++....+=.+.++
T Consensus 45 lt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK 124 (182)
T PF13251_consen 45 LTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLK 124 (182)
T ss_pred hHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 47789999999999999855444432 111000 12333333456666777777888889999
Q ss_pred HHHHhhCCCCc----hHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcc
Q 000832 456 GIIYLLGNPLS----HEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDI 502 (1263)
Q Consensus 456 GLiaLLkn~~S----he~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~i 502 (1263)
++..+..+-.= .+.+..++..++.++.++..-||.+..-.+..+..+
T Consensus 125 ~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 125 CLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 99999987553 445566667777788888888888888777766543
No 81
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.08 E-value=19 Score=46.20 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=56.6
Q ss_pred HHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHH
Q 000832 338 EKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRI 417 (1263)
Q Consensus 338 demL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcri 417 (1263)
...+.++-.|.|..-.+.++|.=|-.|+.-|..+----+++. ......+....+.++..|++--||++++-.+.++
T Consensus 358 ~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~----Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI 433 (859)
T KOG1241|consen 358 GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDK----LTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRI 433 (859)
T ss_pred cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhh----hhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHH
Confidence 445677889999999999999999999999887744333322 1222333345567888899999999999876554
Q ss_pred HH
Q 000832 418 LH 419 (1263)
Q Consensus 418 Ls 419 (1263)
..
T Consensus 434 ~d 435 (859)
T KOG1241|consen 434 AD 435 (859)
T ss_pred Hh
Confidence 44
No 82
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.05 E-value=22 Score=45.59 Aligned_cols=208 Identities=18% Similarity=0.179 Sum_probs=127.7
Q ss_pred HHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHH
Q 000832 339 KMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRIL 418 (1263)
Q Consensus 339 emL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriL 418 (1263)
..|-|...+=+..++...-.-+|--|..++.-+|-..+ ++ |+--|.-|..=|.||.|.|-.||+.=+|..-
T Consensus 139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-eA--------lr~~FprL~EkLeDpDp~V~SAAV~VICELA 209 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-EA--------LRPCFPRLVEKLEDPDPSVVSAAVSVICELA 209 (877)
T ss_pred chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-Hh--------HhhhHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 56677777778888888877899999999999998884 34 5556777788899999999999998788643
Q ss_pred HH-----------HHhhCC----------------------hhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCC--
Q 000832 419 HL-----------FWELIP----------------------SATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGN-- 463 (1263)
Q Consensus 419 sk-----------fWEiIP----------------------~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn-- 463 (1263)
.+ |++++. |-.-+++|.||.+-+-+-.--|+ .+||+..+...
T Consensus 210 rKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSL---lYECvNTVVa~s~ 286 (877)
T KOG1059|consen 210 RKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSL---LYECVNTVVAVSM 286 (877)
T ss_pred hhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHH---HHHHHHHheeehh
Confidence 32 333322 22334444444433322222233 34444433322
Q ss_pred ---C-CchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHH-HHHHhcCchHHHH---------
Q 000832 464 ---P-LSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDIL-LSALANDQSQVAQ--------- 529 (1263)
Q Consensus 464 ---~-~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~L-LaRLa~Ds~~V~k--------- 529 (1263)
. ...+..+--+..|+-++.|...-.||--.-.+.+|. ..+-|-|-.-++| +++|.+..+++|.
T Consensus 287 s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~---ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 287 SSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKIL---KTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred ccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHh---hhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 2 223344556788899999999999998777666665 4445555444444 5555554444443
Q ss_pred -------HHHHHhcccCCCCCCC--hHHHhHHHHHHHhcCh
Q 000832 530 -------KITRLLMPSYFPLKVN--IKEACSRCVTIVKRSP 561 (1263)
Q Consensus 530 -------~IvkLLipSfFP~k~s--~~E~~~RCi~Lik~nP 561 (1263)
+|++-|+.-+-....+ -+|-.+|.|..+..+-
T Consensus 364 VskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~sn 404 (877)
T KOG1059|consen 364 VSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSN 404 (877)
T ss_pred hhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh
Confidence 4555555544433321 3456667766665543
No 83
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=81.11 E-value=18 Score=40.94 Aligned_cols=108 Identities=20% Similarity=0.245 Sum_probs=74.8
Q ss_pred HHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhH
Q 000832 350 FRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSAT 429 (1263)
Q Consensus 350 wRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~ 429 (1263)
.-.++.++..+|..|..++..+.-..+++...++.-+-|.+.| ..+| ||.+.|.-+ ..|+-..+ + ...++++.
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~--~~rl--~D~~~~~~~-l~gl~~L~-~-~~~~~~~~ 77 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFF--CSRL--DDHACVQPA-LKGLLALV-K-MKNFSPES 77 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHH--HHHh--ccHhhHHHH-HHHHHHHH-h-CcCCChhh
Confidence 3467888999999999999999888887643322223333333 2344 788888877 66654333 2 24567777
Q ss_pred HHHHHHHHHHHhccCCC-chHHHHHHHHHHHhhCCC
Q 000832 430 ITKIITKIFDDNSHDLC-NEVRLATVNGIIYLLGNP 464 (1263)
Q Consensus 430 I~slL~~If~~LAkDsQ-DSVRlaVVeGLiaLLkn~ 464 (1263)
+..++..+++..---.+ .++|..+++-+..++++.
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~ 113 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH 113 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh
Confidence 88888888875433333 689999999999998874
No 84
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=80.91 E-value=8.6 Score=37.29 Aligned_cols=69 Identities=19% Similarity=0.092 Sum_probs=50.6
Q ss_pred HHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCC-hhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCC
Q 000832 392 FFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIP-SATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNP 464 (1263)
Q Consensus 392 F~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP-~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~ 464 (1263)
|......+.|+.|-||..|...+ ++..+.=. +.....-+..++....+|+-+-|=+.+++|+.+|++..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L----~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLL----RKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHH----HHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 45557778999999999999864 44443333 33333445567878888887789999999999999864
No 85
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=80.77 E-value=1.9e+02 Score=39.14 Aligned_cols=285 Identities=20% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHhhHhhcCCCcchHHHHHHhhHHHHHH---hhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcC
Q 000832 324 VLGGFVNQRTTPGVEKMLFNLTEPVMFR---SLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLT 400 (1263)
Q Consensus 324 VLs~FHsqK~~kgVdemL~rLY~PILwR---LLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~ 400 (1263)
++.+|+=.|-|+.....=.....-|+.+ ++.+.| ..|.+|+-++.-.|-+-|- .+. +...++-+...-+
T Consensus 153 llnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~~-~~r~~aalllsk~~sR~D~------~~~-~~~Fl~~~l~~~s 224 (1133)
T KOG1943|consen 153 LLNPFDLSRLDESLTFDKTNVILRILSFFENYLISSG-ILRRSAALLLSKLFSRTDV------KDL-LLSFLDWLLDCPS 224 (1133)
T ss_pred HcCCCcccccCcccccCCchHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHcccccH------HHH-HHHHHHHhhcccc
Q ss_pred CCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHH-----hccCCCchHHHHHHHHHH---HhhCCCCc------
Q 000832 401 DDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDD-----NSHDLCNEVRLATVNGII---YLLGNPLS------ 466 (1263)
Q Consensus 401 DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~-----LAkDsQDSVRlaVVeGLi---aLLkn~~S------ 466 (1263)
+++|. .----|+...+..+....+...........++- .+.|+|.-+|=.-++... -+.-+|.+
T Consensus 225 ~~~~n--~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~ 302 (1133)
T KOG1943|consen 225 TETPN--IFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYS 302 (1133)
T ss_pred hhhhh--hHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHHHHHHHHhhheecCCCCcchhhh
Q ss_pred ---------------------------------hHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecCh
Q 000832 467 ---------------------------------HEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGL 513 (1263)
Q Consensus 467 ---------------------------------he~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~ 513 (1263)
++.++.++-.+...+.|..-.||+.+|.-+.++....-
T Consensus 303 rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--------- 373 (1133)
T KOG1943|consen 303 RGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--------- 373 (1133)
T ss_pred cccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---------
Q ss_pred HHHHHHHhcCchHHHHHHHHHhcccCCCCCCChHHHhHHHHHHHhcChHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 000832 514 DILLSALANDQSQVAQKITRLLMPSYFPLKVNIKEACSRCVTIVKRSPVAGARFCEFAVSEGAPLESLVELVTVFIRLVL 593 (1263)
Q Consensus 514 D~LLaRLa~Ds~~V~k~IvkLLipSfFP~k~s~~E~~~RCi~Lik~nP~Aa~~Fy~~a~~~~a~~~~l~~Li~~ll~~~l 593 (1263)
..|+++ |-..+.+ +|-.-++..+|. +|...+=..|. .|.-..+..+-|=-++.-++
T Consensus 374 ----~~Lad~---vi~svid-----~~~p~e~~~aWH-----------gacLaLAELA~-rGlLlps~l~dVvplI~kaL 429 (1133)
T KOG1943|consen 374 ----PELADQ---VIGSVID-----LFNPAEDDSAWH-----------GACLALAELAL-RGLLLPSLLEDVVPLILKAL 429 (1133)
T ss_pred ----HHHHHH---HHHHHHH-----hcCcCCchhHHH-----------HHHHHHHHHHh-cCCcchHHHHHHHHHHHHHh
Q ss_pred cCCCCChhHHHHHHH--HHHHHHhhhhhhHhHHHHHHhHhhhhhHHHHHHhhcccc------ccchhh
Q 000832 594 SHDKLDEDQIEGLLA--AVSYLCKDIAREQCYKNALKELFANDKVKSLFAAASTGR------ARSSVF 653 (1263)
Q Consensus 594 s~~k~~~e~~eg~~~--a~a~L~~~L~~~~~~k~~l~~l~~g~~l~~ll~~a~t~~------a~sa~~ 653 (1263)
.=++.-.-.+-|=.+ |..|+|.+++ .+|-..--+=|--.-...|+..|.=+| |.+|++
T Consensus 430 ~Yd~~~G~~s~G~~VRDaAcY~~WAf~--Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 430 HYDVRRGQHSVGQHVRDAACYVCWAFA--RAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred hhhhhhcccccccchHHHHHHHHHHHH--hcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
No 86
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.58 E-value=11 Score=49.79 Aligned_cols=98 Identities=21% Similarity=0.133 Sum_probs=65.4
Q ss_pred chHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHH-HHHhhhcCCC-ChHHHHHHHhhhhHHHHHHHhhCChhHHHHH-
Q 000832 357 NSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQF-FLLEKLLTDD-CPDVRVVAVEGCCRILHLFWELIPSATITKI- 433 (1263)
Q Consensus 357 NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF-~~L~~LL~DD-tPMVRRAAA~gVcriLskfWEiIP~~~I~sl- 433 (1263)
+..-|+-|+-+++.+--...-. +++.|+..+ ..-...+.|+ .|..|-=.+. .|+++|+-.+.......
T Consensus 570 ~~EqrtmaAFVLAviv~nf~lG-----Q~acl~~~li~iCle~lnd~~~pLLrQW~~i----cLG~LW~d~~~Arw~G~r 640 (1387)
T KOG1517|consen 570 PPEQRTMAAFVLAVIVRNFKLG-----QKACLNGNLIGICLEHLNDDPEPLLRQWLCI----CLGRLWEDYDEARWSGRR 640 (1387)
T ss_pred CHHHHHHHHHHHHHHHcccchh-----HHHhccccHHHHHHHHhcCCccHHHHHHHHH----HHHHHhhhcchhhhcccc
Confidence 4578888888888764443222 234444433 2334556664 8999987666 69999999986533222
Q ss_pred ---HHHHHHHhccCCCchHHHHHHHHHHHhhCCC
Q 000832 434 ---ITKIFDDNSHDLCNEVRLATVNGIIYLLGNP 464 (1263)
Q Consensus 434 ---L~~If~~LAkDsQDSVRlaVVeGLiaLLkn~ 464 (1263)
-.+++. +..|....||.++|=+|..++.+.
T Consensus 641 ~~AhekL~~-~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 641 DNAHEKLIL-LLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred ccHHHHHHH-HhcCccHHHHHHHHHHHHHHhccc
Confidence 122332 457899999999999999999874
No 87
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=79.53 E-value=57 Score=45.95 Aligned_cols=169 Identities=14% Similarity=0.075 Sum_probs=91.8
Q ss_pred HHHHHHHhHHHHhhhcccch--------h----hHHHHHHhHHHHHHHHhhcc-CC--HHHHHHHHHHHhhHhhcCCCcc
Q 000832 272 KSMLEAYGDVLYRAWKGVEE--------G----FREDVESGFLQVLIEGAIHA-SS--RAFAASIRRVLGGFVNQRTTPG 336 (1263)
Q Consensus 272 kS~le~YGEIyFrAWK~A~g--------d----~~eeIE~~cIQdLm~~AIha-~s--~~lAaklR~VLs~FHsqK~~kg 336 (1263)
..++..+|+-+-..||..=+ + +.-.+| .++.+|...++. +. +.-..-+-..|..|.+|+.+.+
T Consensus 1208 ~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFe--tl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~n 1285 (1780)
T PLN03076 1208 SQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFE--IIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKD 1285 (1780)
T ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHH--HHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCccc
Confidence 45677788888889997521 1 112333 466666665552 11 2334455678999999887654
Q ss_pred hHHHHHHhhHHHHHHhhcCCch-HHHHHHH-HHh-----HhhcCCCCCc-cchHHHHHHHHHHHHHHhhhcCCCChHHHH
Q 000832 337 VEKMLFNLTEPVMFRSLQAANS-NVRQNAL-HLL-----LDLFPLEDPD-ATKEVKDTLFDKQFFLLEKLLTDDCPDVRV 408 (1263)
Q Consensus 337 VdemL~rLY~PILwRLLka~Nf-tVR~SA~-~LF-----~~AFPlvdpd-~~rEe~d~EL~kQF~~L~~LL~DDtPMVRR 408 (1263)
+-=.-.+++--+...++++... ..+.... ... ....+..+.. ...+.....-.-.+..|.+++.|+-|+||.
T Consensus 1286 ISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~ 1365 (1780)
T PLN03076 1286 ISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRK 1365 (1780)
T ss_pred ccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4422233333333344433210 0010000 000 0000000000 000111122223344566779999999999
Q ss_pred HHHhhhhHHHHHHHhhCChh----HHHHHHHHHHHHhc
Q 000832 409 VAVEGCCRILHLFWELIPSA----TITKIITKIFDDNS 442 (1263)
Q Consensus 409 AAA~gVcriLskfWEiIP~~----~I~slL~~If~~LA 442 (1263)
.|++-+-++|..|-..++++ ..+.+|-|||+.+-
T Consensus 1366 ~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~ 1403 (1780)
T PLN03076 1366 SALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVR 1403 (1780)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888864 46667889998864
No 88
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=79.41 E-value=45 Score=40.83 Aligned_cols=92 Identities=21% Similarity=0.140 Sum_probs=58.3
Q ss_pred CChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCc-hH----HHHh-HHH
Q 000832 402 DCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLS-HE----VLKV-LLP 475 (1263)
Q Consensus 402 DtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~S-he----~Lk~-LLP 475 (1263)
+....|..|=+.++.++...-..+.. -.+++..+|+.| .++.++||.++-++|..|+..... .+ .... +.-
T Consensus 386 ~~~~lR~~aYe~lG~L~~~~p~l~~~--d~~li~~LF~sL-~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~ 462 (501)
T PF13001_consen 386 EDIELRSLAYETLGLLAKRAPSLFSK--DLSLIEFLFDSL-EDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLEL 462 (501)
T ss_pred ccHHHHHHHHHHHHHHHccCcccccc--cHHHHHHHHHHh-hCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 45566777766443333333333322 367889999999 777899999999999988753322 11 2222 223
Q ss_pred hhhhhcCCCchHHHHHHHHHH
Q 000832 476 RLGHLMQDNVLSVRLAMADLL 496 (1263)
Q Consensus 476 ~LksLI~DkSWRVRyAfADLL 496 (1263)
.+....++..-.+||+++.-.
T Consensus 463 l~~~~~~~~~~~~R~~avk~a 483 (501)
T PF13001_consen 463 LLLSYIQSEVRSCRYAAVKYA 483 (501)
T ss_pred HHHhhccchhHHHHHHHHHHH
Confidence 344556677888999988763
No 89
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.29 E-value=15 Score=46.67 Aligned_cols=126 Identities=24% Similarity=0.389 Sum_probs=83.6
Q ss_pred HHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHH
Q 000832 342 FNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLF 421 (1263)
Q Consensus 342 ~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskf 421 (1263)
.+.+.|=..+..+.++...|.-|.+=.--+.+..+. .. ...+.+..+.+..|-.|+.|.||+. +|+.+...
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q-al----~~~iD~Fle~lFalanD~~~eVRk~----vC~alv~L 242 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ-AL----YVHIDKFLEILFALANDEDPEVRKN----VCRALVFL 242 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH-HH----HHHHHHHHHHHHHHccCCCHHHHHH----HHHHHHHH
Confidence 456667777888899999999998887777777654 32 3345555556668889999999985 55556666
Q ss_pred HhhCChhHHHHHHHHHHHHh---ccCCCchHHHHHHHHHHHhhCCCCchHHHHh----HHHhh
Q 000832 422 WELIPSATITKIITKIFDDN---SHDLCNEVRLATVNGIIYLLGNPLSHEVLKV----LLPRL 477 (1263)
Q Consensus 422 WEiIP~~~I~slL~~If~~L---AkDsQDSVRlaVVeGLiaLLkn~~She~Lk~----LLP~L 477 (1263)
-|.-|. .+...+..|++.+ .+|.-.+|-+-+-|=..++++.+...+.+.. +.|.+
T Consensus 243 levr~d-kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvL 304 (885)
T KOG2023|consen 243 LEVRPD-KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVL 304 (885)
T ss_pred HHhcHH-hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHH
Confidence 666552 2222333344333 3455446888787878889999877655544 44544
No 90
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.39 E-value=97 Score=42.95 Aligned_cols=394 Identities=18% Similarity=0.129 Sum_probs=214.2
Q ss_pred chHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhh
Q 000832 336 GVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCC 415 (1263)
Q Consensus 336 gVdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVc 415 (1263)
.|+......+.-++.++...+|..+|..+|--+...--.++.....--+..+++.-| ..+|.|+.--+--.|++|+
T Consensus 810 ~~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF---~~~Lsd~dEf~QDvAsrGl- 885 (1702)
T KOG0915|consen 810 KVNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAF---SHLLSDNDEFSQDVASRGL- 885 (1702)
T ss_pred ccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHH---HHHhcccHHHHHHHHhcCc-
Confidence 456667788889999999999999999999877765544442111112345565445 9999999999999999994
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHHhccCC---------------------CchHHHHHHH-------------------
Q 000832 416 RILHLFWELIPSATITKIITKIFDDNSHDL---------------------CNEVRLATVN------------------- 455 (1263)
Q Consensus 416 riLskfWEiIP~~~I~slL~~If~~LAkDs---------------------QDSVRlaVVe------------------- 455 (1263)
+...++-..+.-.++...+++.|+.-. -|+=.+.+++
T Consensus 886 ---glVYelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM 962 (1702)
T KOG0915|consen 886 ---GLVYELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFM 962 (1702)
T ss_pred ---eEEEecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHH
Confidence 544455444444444444443333210 0111233333
Q ss_pred -----------------HHHHhhCCCC--chHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHh----hcccCCceeeecC
Q 000832 456 -----------------GIIYLLGNPL--SHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLL----RDIRTFQFNKVVG 512 (1263)
Q Consensus 456 -----------------GLiaLLkn~~--She~Lk~LLP~LksLI~DkSWRVRyAfADLLleL----k~irgiKF~~VV~ 512 (1263)
|+.+|+++.. -++.+++++|++-..=-|+...||-|+.+.-..| +++...-||+|
T Consensus 963 ~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neI-- 1040 (1702)
T KOG0915|consen 963 QLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEI-- 1040 (1702)
T ss_pred HHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHH--
Confidence 3333333221 2567778889888777888888888888765554 33344456666
Q ss_pred hHHHHHHHhcCchHHHHHHHHHhcccCC-CCCC-------ChHHHhHHHHHHHhcC-hHHHHHHHHHHhh---------c
Q 000832 513 LDILLSALANDQSQVAQKITRLLMPSYF-PLKV-------NIKEACSRCVTIVKRS-PVAGARFCEFAVS---------E 574 (1263)
Q Consensus 513 ~D~LLaRLa~Ds~~V~k~IvkLLipSfF-P~k~-------s~~E~~~RCi~Lik~n-P~Aa~~Fy~~a~~---------~ 574 (1263)
.|+|+..|+.--=|||+..+--|..-.= |... ..+++.=|..-=|+.+ +.||-+|+++.-. +
T Consensus 1041 l~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~ 1120 (1702)
T KOG0915|consen 1041 LDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN 1120 (1702)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 5677777776656777665544333211 1111 1223333433333332 4666666665432 1
Q ss_pred CCChHHHHH-----------------HHHHHHHhhc----cCC---CC-ChhHHHHHHHHHHHHHhhhhhhHhHHHHHHh
Q 000832 575 GAPLESLVE-----------------LVTVFIRLVL----SHD---KL-DEDQIEGLLAAVSYLCKDIAREQCYKNALKE 629 (1263)
Q Consensus 575 ~a~~~~l~~-----------------Li~~ll~~~l----s~~---k~-~~e~~eg~~~a~a~L~~~L~~~~~~k~~l~~ 629 (1263)
|+.++.++. .=+++++.++ +.. +| -++=|.-|+.|.+-|+.+.-+|-++..- +
T Consensus 1121 ~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~--~ 1198 (1702)
T KOG0915|consen 1121 GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLI--N 1198 (1702)
T ss_pred cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhh--h
Confidence 222222222 2222233222 111 12 2455777777777788777777665541 1
Q ss_pred HhhhhhHHHH-HHhhccccccchhhhhhcccCCCchhHHHHHHHhhhhhcCCCChhhhhHHHHHH-HhHH----------
Q 000832 630 LFANDKVKSL-FAAASTGRARSSVFEIVSTVSPDNVVGLLEQCMGLISKCKGLSEDEERQAEVRS-AHKL---------- 697 (1263)
Q Consensus 630 l~~g~~l~~l-l~~a~t~~a~sa~~~I~s~~~~~~~~~~~~~c~~~~~~~~g~~~~~~~q~~~~s-a~~~---------- 697 (1263)
. .-+++..+ ..++.+.|.--++=-.+.++.-.-+.++.-+=..++.+.-|+++-++.---|-. +.++
T Consensus 1199 ~-e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgK 1277 (1702)
T KOG0915|consen 1199 I-ETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGK 1277 (1702)
T ss_pred h-HHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhH
Confidence 1 11333333 234555565555555555554444555666666677788888877654332110 0000
Q ss_pred -h-hccCChhHHHHHHHHHHHHHHhhhhhccccCCCCCcCccccccCCC
Q 000832 698 -L-LSSCAFDDMLEALTMLLQKAVYRCHVKFGTEIPKHNVSSVKRKKPK 744 (1263)
Q Consensus 698 -~-~s~~~~d~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~krkk~k 744 (1263)
+ ...-|+.|+-++..... |.-|+.-++++.|.+..+.....=++
T Consensus 1278 ll~al~~g~~dRNesv~kaf---AsAmG~L~k~Ss~dq~qKLie~~l~~ 1323 (1702)
T KOG0915|consen 1278 LLRALFPGAKDRNESVRKAF---ASAMGYLAKFSSPDQMQKLIETLLAD 1323 (1702)
T ss_pred HHHHHhhccccccHHHHHHH---HHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 0 00114444555554443 55667777777776655444444333
No 91
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=77.70 E-value=94 Score=32.35 Aligned_cols=128 Identities=20% Similarity=0.088 Sum_probs=82.7
Q ss_pred hHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhH
Q 000832 337 VEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCR 416 (1263)
Q Consensus 337 VdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcr 416 (1263)
.+......|.|.+. ..+||.+-=..|.-+..-++.-.+. + ..+.....|+.+.+||+|....
T Consensus 68 ~~~~~~~~~~~~i~---~~~~W~~~D~~~~~~~~~~~~~~~~---------~----~~~~~w~~s~~~~~rR~~~~~~-- 129 (197)
T cd06561 68 LKEEDLERFEPWIE---YIDNWDLVDSLCANLLGKLLYAEPE---------L----DLLEEWAKSENEWVRRAAIVLL-- 129 (197)
T ss_pred CCHHHHHHHHHHHc---CCchHHHHHHHHHHHHHHHHhcCcc---------h----HHHHHHHhCCcHHHHHHHHHHH--
Confidence 45556777788877 7778877776666666555543331 1 3347889999999999999864
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHH
Q 000832 417 ILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLA 491 (1263)
Q Consensus 417 iLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyA 491 (1263)
+..+.. ..-.+.+..++..+..|+..-||-++=-.|..+... ....++..+-.... ..+.+..|||
T Consensus 130 -~~~~~~----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~~~l~~~~~---~~~~~t~r~a 195 (197)
T cd06561 130 -LRLIKK----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVIAFLEKNGL---SMPRLTLRYA 195 (197)
T ss_pred -HHHHHh----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH---hCChHHHHHH
Confidence 233333 223445667888888889999999998888888876 22233332222211 2266777776
No 92
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.67 E-value=2.2e+02 Score=37.61 Aligned_cols=278 Identities=18% Similarity=0.148 Sum_probs=142.3
Q ss_pred CChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCch-HHHHHHHHHHHhhCCCCc----------hHH-
Q 000832 402 DCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNE-VRLATVNGIIYLLGNPLS----------HEV- 469 (1263)
Q Consensus 402 DtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDS-VRlaVVeGLiaLLkn~~S----------he~- 469 (1263)
--+.=||.|+.|+..+-.+|=+.+ ...=+.++++.|-+|-.|. .=-++++.+..+.....+ .+.
T Consensus 35 TL~eDRR~A~rgLKa~srkYR~~V----ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g 110 (970)
T KOG0946|consen 35 TLLEDRRDAVRGLKAFSRKYREEV----GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLG 110 (970)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHH----HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHH
Confidence 345669999999766666665543 3444677788888887653 333456666665543321 110
Q ss_pred ------H-H--hHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhcCchHHHHHHHHHhcccCC
Q 000832 470 ------L-K--VLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALANDQSQVAQKITRLLMPSYF 540 (1263)
Q Consensus 470 ------L-k--~LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~Ds~~V~k~IvkLLipSfF 540 (1263)
+ + ..+..+..++.-..-+||++.+++|..|-..|+-+.-+. ...+|.=-.+++.+|-.|-=
T Consensus 111 ~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~----------ll~~P~gIS~lmdlL~DsrE 180 (970)
T KOG0946|consen 111 LWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDA----------LLVSPMGISKLMDLLRDSRE 180 (970)
T ss_pred HHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHH----------HHHCchhHHHHHHHHhhhhh
Confidence 0 0 122334445666778999999999988888887654433 12233222556666666655
Q ss_pred CCCCChHHHhHHHHHHHhcCh---------HHHHHHHHHHhhcC-CCh----HHHHHHHHHHHHhhccCCCCChhHHHHH
Q 000832 541 PLKVNIKEACSRCVTIVKRSP---------VAGARFCEFAVSEG-APL----ESLVELVTVFIRLVLSHDKLDEDQIEGL 606 (1263)
Q Consensus 541 P~k~s~~E~~~RCi~Lik~nP---------~Aa~~Fy~~a~~~~-a~~----~~l~~Li~~ll~~~ls~~k~~~e~~eg~ 606 (1263)
|... |++-=...|.+.|| .|--+.+...-.+| .++ +.-+.++..++..=.|.
T Consensus 181 ~IRN---e~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN----------- 246 (970)
T KOG0946|consen 181 PIRN---EAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN----------- 246 (970)
T ss_pred hhch---hHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch-----------
Confidence 5432 23333444555554 23333333332232 222 22222222222221111
Q ss_pred HHHHHHHHhhhhhhHhHHHHHHhHh----hhhhHHHHHHhhccccccchhhhhhcccCCCchhHHHHHHHhhhhhcCCCC
Q 000832 607 LAAVSYLCKDIAREQCYKNALKELF----ANDKVKSLFAAASTGRARSSVFEIVSTVSPDNVVGLLEQCMGLISKCKGLS 682 (1263)
Q Consensus 607 ~~a~a~L~~~L~~~~~~k~~l~~l~----~g~~l~~ll~~a~t~~a~sa~~~I~s~~~~~~~~~~~~~c~~~~~~~~g~~ 682 (1263)
.++-.|.+|...|.+++ +|..=-.-|.+-...----++-.+-+.|||++-++..+.|-.++..|.++
T Consensus 247 --------Q~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll- 317 (970)
T KOG0946|consen 247 --------QNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLL- 317 (970)
T ss_pred --------hhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchH-
Confidence 11233455555555433 22210000111111111223334556789999999999998888777665
Q ss_pred hhhhhHHHHHHHhHHhhccCChhHHHHHHHHHHHHHHhhhhhc
Q 000832 683 EDEERQAEVRSAHKLLLSSCAFDDMLEALTMLLQKAVYRCHVK 725 (1263)
Q Consensus 683 ~~~~~q~~~~sa~~~~~s~~~~d~~~~~l~~~l~~~~~~~~~~ 725 (1263)
.+++ ..+++.|-|-|+.-.=-+.+....+.|+.+
T Consensus 318 ------~~Lc---~il~~~~vp~dIltesiitvAevVRgn~~n 351 (970)
T KOG0946|consen 318 ------DVLC---TILMHPGVPADILTESIITVAEVVRGNARN 351 (970)
T ss_pred ------HHHH---HHHcCCCCcHhHHHHHHHHHHHHHHhchHH
Confidence 2222 334566666666544444555566666544
No 93
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.46 E-value=2.2e+02 Score=38.86 Aligned_cols=152 Identities=17% Similarity=0.088 Sum_probs=104.6
Q ss_pred hhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHH--HHH
Q 000832 344 LTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRIL--HLF 421 (1263)
Q Consensus 344 LY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriL--skf 421 (1263)
.....+..+.++--+.+|.+++.-+..+|...+.+. ...+.+....+.=++.|-.---|+.|-+-+-.+. ..+
T Consensus 697 ~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~-----~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~ 771 (1176)
T KOG1248|consen 697 DIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEH-----CDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSS 771 (1176)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHH-----HHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhh
Confidence 334455567777788899999999999999987432 2334444444444448888888888877543333 333
Q ss_pred HhhCC---hhHHHHHHHHHHHHhccCCC-chHH-HHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHH
Q 000832 422 WELIP---SATITKIITKIFDDNSHDLC-NEVR-LATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLL 496 (1263)
Q Consensus 422 WEiIP---~~~I~slL~~If~~LAkDsQ-DSVR-laVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADLL 496 (1263)
-+-.. .+.+.+++..|...++.|+. ..++ +.++..+.+=-++..+.+.+..++..+.-.|.-++..||.+++..+
T Consensus 772 ~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fi 851 (1176)
T KOG1248|consen 772 LDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFI 851 (1176)
T ss_pred hcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33332 44788888888888888875 2233 3333333333356777899999999999999999999999999876
Q ss_pred HHhh
Q 000832 497 LLLR 500 (1263)
Q Consensus 497 leLk 500 (1263)
.-+.
T Consensus 852 kvlv 855 (1176)
T KOG1248|consen 852 KVLV 855 (1176)
T ss_pred HHHH
Confidence 5554
No 94
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=77.27 E-value=11 Score=48.08 Aligned_cols=113 Identities=21% Similarity=0.194 Sum_probs=78.0
Q ss_pred HHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhH
Q 000832 394 LLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVL 473 (1263)
Q Consensus 394 ~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~L 473 (1263)
++.+|+.|..|+.|+..+-. +.-.|.-.-.-..|+. ++---.+|..|+||-++|-++-.++-... ..
T Consensus 523 lI~el~~dkdpilR~~Gm~t---~alAy~GTgnnkair~----lLh~aVsD~nDDVrRaAVialGFVl~~dp------~~ 589 (929)
T KOG2062|consen 523 LIKELLRDKDPILRYGGMYT---LALAYVGTGNNKAIRR----LLHVAVSDVNDDVRRAAVIALGFVLFRDP------EQ 589 (929)
T ss_pred HHHHHhcCCchhhhhhhHHH---HHHHHhccCchhhHHH----hhcccccccchHHHHHHHHHheeeEecCh------hh
Confidence 35889999999999987753 3444555444444443 33345678899999999999988875421 24
Q ss_pred HHhhhhhcCC-CchHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhcCc
Q 000832 474 LPRLGHLMQD-NVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALANDQ 524 (1263)
Q Consensus 474 LP~LksLI~D-kSWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~Ds 524 (1263)
+|++..++.+ -+.-|||.+|-.|.--+.--|.+ .--.||..|..|.
T Consensus 590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-----eAi~lLepl~~D~ 636 (929)
T KOG2062|consen 590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-----EAINLLEPLTSDP 636 (929)
T ss_pred chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-----HHHHHHhhhhcCh
Confidence 5555555544 48999999999987776666544 2245688888885
No 95
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=76.44 E-value=19 Score=40.66 Aligned_cols=104 Identities=22% Similarity=0.253 Sum_probs=76.8
Q ss_pred HHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCC-hhHHHHHHHHHHHHhccCCC-chHHHHHHHHHHHhhCCCCchHHH
Q 000832 393 FLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIP-SATITKIITKIFDDNSHDLC-NEVRLATVNGIIYLLGNPLSHEVL 470 (1263)
Q Consensus 393 ~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP-~~~I~slL~~If~~LAkDsQ-DSVRlaVVeGLiaLLkn~~She~L 470 (1263)
..+.+++.|+.|.||..|... |..+....+ ...++..+..+......+.. ..|.++.+..|..|-=....|..+
T Consensus 57 ~lI~~lL~~p~~~vr~~AL~a----L~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l 132 (254)
T PF04826_consen 57 SLIGSLLNDPNPSVREKALNA----LNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHML 132 (254)
T ss_pred HHHHHHcCCCChHHHHHHHHH----HHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhH
Confidence 456999999999999888764 443333322 24667778888887777664 458888888887775555557777
Q ss_pred HhHHHhhhhhcCCCchHHHHHHHHHHHHhh
Q 000832 471 KVLLPRLGHLMQDNVLSVRLAMADLLLLLR 500 (1263)
Q Consensus 471 k~LLP~LksLI~DkSWRVRyAfADLLleLk 500 (1263)
...+|.+..++.-.+.++|.-+...|..+.
T Consensus 133 ~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 133 ANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 778888888888889999998888866655
No 96
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=75.81 E-value=34 Score=38.72 Aligned_cols=149 Identities=18% Similarity=0.135 Sum_probs=87.8
Q ss_pred HHHhhhcC-CCChHHHHHHHhhhhHHHHHHHhhCC--hhHHHHH-HHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchH
Q 000832 393 FLLEKLLT-DDCPDVRVVAVEGCCRILHLFWELIP--SATITKI-ITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHE 468 (1263)
Q Consensus 393 ~~L~~LL~-DDtPMVRRAAA~gVcriLskfWEiIP--~~~I~sl-L~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She 468 (1263)
+-|..+|+ .+.|-++..|...++..-+ .| .+.+.+. ..+++..+..|..+.||..++.++..+..+.....
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aa-----f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAA-----FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcc-----ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 33455666 4678888887764332211 22 2233332 34688889999999999999999998887776677
Q ss_pred HHHhHHHhhhhhcCCC--chHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhcCchHHHHHHHHHhcccCCCCCCCh
Q 000832 469 VLKVLLPRLGHLMQDN--VLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALANDQSQVAQKITRLLMPSYFPLKVNI 546 (1263)
Q Consensus 469 ~Lk~LLP~LksLI~Dk--SWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~Ds~~V~k~IvkLLipSfFP~k~s~ 546 (1263)
.++..++.+-..+-.. .-.|..+...+|..+.=. ..+.+ .++..+..+ ++-.--.+...
T Consensus 90 ~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--~~~~~----------------~l~~~i~~l-l~LL~~G~~~~ 150 (254)
T PF04826_consen 90 QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--NDYHH----------------MLANYIPDL-LSLLSSGSEKT 150 (254)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--cchhh----------------hHHhhHHHH-HHHHHcCChHH
Confidence 7777777665543333 347777877887766511 11111 122222222 11111123445
Q ss_pred HHHhHHHHHHHhcChHHHH
Q 000832 547 KEACSRCVTIVKRSPVAGA 565 (1263)
Q Consensus 547 ~E~~~RCi~Lik~nP~Aa~ 565 (1263)
++++=|++.-+..||..++
T Consensus 151 k~~vLk~L~nLS~np~~~~ 169 (254)
T PF04826_consen 151 KVQVLKVLVNLSENPDMTR 169 (254)
T ss_pred HHHHHHHHHHhccCHHHHH
Confidence 5667777777777777665
No 97
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=74.67 E-value=23 Score=45.54 Aligned_cols=166 Identities=13% Similarity=0.085 Sum_probs=101.4
Q ss_pred hHhhcCCCcchHHHH-HHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChH
Q 000832 327 GFVNQRTTPGVEKML-FNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPD 405 (1263)
Q Consensus 327 ~FHsqK~~kgVdemL-~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPM 405 (1263)
.....-...++++-+ +++|..|+.-....++- -+++...||.+..+.. ...+..+-+...+...+|...+|.
T Consensus 742 ri~~~lg~~diderleE~lidgil~Afqeqtt~------d~vml~gfg~V~~~lg-~r~kpylpqi~stiL~rLnnksa~ 814 (1172)
T KOG0213|consen 742 RIVGRLGAADIDERLEERLIDGILYAFQEQTTE------DSVMLLGFGTVVNALG-GRVKPYLPQICSTILWRLNNKSAK 814 (1172)
T ss_pred HHHhccccccccHHHHHHHHHHHHHHHHhcccc------hhhhhhhHHHHHHHHh-hccccchHHHHHHHHHHhcCCChh
Confidence 333333345565444 67788888765555442 2344455555533221 112445666677889999999999
Q ss_pred HHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCC---CchHHHHhHHHhhhhhcC
Q 000832 406 VRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNP---LSHEVLKVLLPRLGHLMQ 482 (1263)
Q Consensus 406 VRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~---~She~Lk~LLP~LksLI~ 482 (1263)
||..|+.- +..+...-..--.+..-..+-.++-.-...+-+.|==.++.++.+|.... .-.+-.+.+||+|...+.
T Consensus 815 vRqqaadl-is~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILk 893 (1172)
T KOG0213|consen 815 VRQQAADL-ISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILK 893 (1172)
T ss_pred HHHHHHHH-HHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhh
Confidence 99999973 33344333333333344444444444334444566556666666665432 224456779999999999
Q ss_pred CCchHHHHHHHHHHHHhh
Q 000832 483 DNVLSVRLAMADLLLLLR 500 (1263)
Q Consensus 483 DkSWRVRyAfADLLleLk 500 (1263)
.+-++|-.+.+|++..|+
T Consensus 894 nrheKVqen~IdLvg~Ia 911 (1172)
T KOG0213|consen 894 NRHEKVQENCIDLVGTIA 911 (1172)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 999999999999976666
No 98
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.18 E-value=29 Score=43.12 Aligned_cols=179 Identities=21% Similarity=0.175 Sum_probs=114.5
Q ss_pred HHHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhc-CCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 000832 319 ASIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQ-AANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEK 397 (1263)
Q Consensus 319 aklR~VLs~FHsqK~~kgVdemL~rLY~PILwRLLk-a~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~ 397 (1263)
.++|++|+.. + .+.++..+..=-.|.+-..+. ..+..+|..|+=-+.-+--.- ++.++...+.- -...|..
T Consensus 88 ~~~rkllS~~---~-~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~ag---avp~fi~ 159 (514)
T KOG0166|consen 88 QAFRKLLSKE---R-NPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAG---AVPIFIQ 159 (514)
T ss_pred HHHHHHHccC---C-CCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCC---chHHHHH
Confidence 5777777553 2 267888887777777777775 666888888876666543221 11221111111 1234599
Q ss_pred hcCCCChHHHHHHHhhhhHHHHHHHhhCCh--h--HHHHHHHHHHHHhccCCCch-HHHHHHHHHHHhh--CCCCch-HH
Q 000832 398 LLTDDCPDVRVVAVEGCCRILHLFWELIPS--A--TITKIITKIFDDNSHDLCNE-VRLATVNGIIYLL--GNPLSH-EV 469 (1263)
Q Consensus 398 LL~DDtPMVRRAAA~gVcriLskfWEiIP~--~--~I~slL~~If~~LAkDsQDS-VRlaVVeGLiaLL--kn~~Sh-e~ 469 (1263)
|+..+.+.||..|+-.+..+.+ --|. + .....+.++..-+..+...+ +|-+ .=.+.-+- ++|..+ +.
T Consensus 160 Ll~s~~~~v~eQavWALgNIag----ds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~-tW~LsNlcrgk~P~P~~~~ 234 (514)
T KOG0166|consen 160 LLSSPSADVREQAVWALGNIAG----DSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNA-TWTLSNLCRGKNPSPPFDV 234 (514)
T ss_pred HhcCCcHHHHHHHHHHHhcccc----CChHHHHHHHhhcchHHHHHHhccccchHHHHHH-HHHHHHHHcCCCCCCcHHH
Confidence 9999999999999986544443 2221 1 12223567777777777644 4443 33444444 334443 67
Q ss_pred HHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeee
Q 000832 470 LKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKV 510 (1263)
Q Consensus 470 Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~V 510 (1263)
+..+||.|..+++.....|...++-.+..|.+.-+.+..-|
T Consensus 235 v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~v 275 (514)
T KOG0166|consen 235 VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMV 275 (514)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 88899999999999999999888888887877666555444
No 99
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.79 E-value=1.5e+02 Score=39.98 Aligned_cols=140 Identities=20% Similarity=0.255 Sum_probs=102.6
Q ss_pred cCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhh
Q 000832 399 LTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLG 478 (1263)
Q Consensus 399 L~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~Lk 478 (1263)
-+|-.|.+|...++.+ +......|...+.+...+-+.=.-+|.+++||+.++.+|..+-.+......+..+..+.+
T Consensus 296 YRDV~~~IRaiCiqeL----giWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK 371 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQEL----GIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFK 371 (1048)
T ss_pred cccCchHHHHHHHHHH----HHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 5899999999999964 555557888888888788888888999999999999999999998666667777666554
Q ss_pred h----hc-CCCchHHHHHHHHHHHHhhcccCCceeeecChHHHHH---HHhcCchHHHHHHHHHhcccCCCCCCChHH
Q 000832 479 H----LM-QDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLS---ALANDQSQVAQKITRLLMPSYFPLKVNIKE 548 (1263)
Q Consensus 479 s----LI-~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~LLa---RLa~Ds~~V~k~IvkLLipSfFP~k~s~~E 548 (1263)
. +. .|-+.-||..-...+.... .-..++-+++.. -+-..+++|++..++.|..-+|-.....++
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~~~~~~------~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a~~e~ 443 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVLCLLLS------SSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVANSER 443 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHh------cccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhccccchhh
Confidence 3 44 6788888877666655543 233345555533 333345789999999988877755544433
No 100
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=73.21 E-value=4.2 Score=51.27 Aligned_cols=141 Identities=17% Similarity=0.131 Sum_probs=115.0
Q ss_pred hhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHh
Q 000832 344 LTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWE 423 (1263)
Q Consensus 344 LY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWE 423 (1263)
--.|-+--.+...|.+.|-....-++..-|.++... ...|+.+-| .++-.|+++.+|.--.- +|++.-.
T Consensus 369 ~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~----Ln~Ellr~~---ar~q~d~~~~irtntti----clgki~~ 437 (690)
T KOG1243|consen 369 QIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRN----LNGELLRYL---ARLQPDEHGGIRTNTTI----CLGKIAP 437 (690)
T ss_pred hhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhh----hcHHHHHHH---HhhCccccCccccccee----eeccccc
Confidence 345677778889999999999999999999997752 467787777 77777999999987665 5787777
Q ss_pred hCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHH
Q 000832 424 LIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADL 495 (1263)
Q Consensus 424 iIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADL 495 (1263)
.+.+......+..-|..-.+|....-|.+.+.++.+.-+.+.-.++-.+++|++--+.-|+..-||--+-+.
T Consensus 438 ~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~ 509 (690)
T KOG1243|consen 438 HLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKA 509 (690)
T ss_pred ccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchhhHHHHH
Confidence 777777766666667776788899999999999999888877788888999999999999999999765443
No 101
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.99 E-value=21 Score=44.05 Aligned_cols=145 Identities=21% Similarity=0.180 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChh---HHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhC
Q 000832 386 TLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSA---TITKIITKIFDDNSHDLCNEVRLATVNGIIYLLG 462 (1263)
Q Consensus 386 ~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~---~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLk 462 (1263)
..|.+.|..+.+=..|++.-+|+-|+.+ |+......|.. .-...+.-|+..|-+|..-+|-+.++.+|.-+++
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~----L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~ 329 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRG----LGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLE 329 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHH----HHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 3466777777777999999999999986 45444556743 4455677788888888888999999999999887
Q ss_pred CCCchH---HHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhc------C-chHHHHHHH
Q 000832 463 NPLSHE---VLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALAN------D-QSQVAQKIT 532 (1263)
Q Consensus 463 n~~She---~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~------D-s~~V~k~Iv 532 (1263)
.....+ .+.++--+++.+..|....+|++..-+|..+.+.-|-++-+ .-.+++.++++. | +|.|++.+.
T Consensus 330 ~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~-~Fte~v~k~~~~lllhl~d~~p~va~ACr 408 (533)
T KOG2032|consen 330 KASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEE-FFTEQVKKRLAPLLLHLQDPNPYVARACR 408 (533)
T ss_pred hhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchh-hhHHHHHhccccceeeeCCCChHHHHHHH
Confidence 665544 44445557899999999999999999999988776655332 233444433321 2 355666655
Q ss_pred HHh
Q 000832 533 RLL 535 (1263)
Q Consensus 533 kLL 535 (1263)
..+
T Consensus 409 ~~~ 411 (533)
T KOG2032|consen 409 SEL 411 (533)
T ss_pred HHH
Confidence 443
No 102
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=72.15 E-value=2.3e+02 Score=37.13 Aligned_cols=109 Identities=18% Similarity=0.158 Sum_probs=76.4
Q ss_pred HHHhhcCCchHHHHHHHHHhHhhcCC--CCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCC
Q 000832 349 MFRSLQAANSNVRQNALHLLLDLFPL--EDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIP 426 (1263)
Q Consensus 349 LwRLLka~NftVR~SA~~LF~~AFPl--vdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP 426 (1263)
+-.++..+.|+.|+.-....+.+-.. .|+ ..-|...+.++.+.+.+..=+.|-.|-+|.-|.++ +.+.++.-.
T Consensus 304 ~~~LLdses~tlRc~~~EicaN~V~~~~~d~-qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv----~~kifdl~s 378 (1128)
T COG5098 304 FDELLDSESFTLRCCFLEICANLVEHFKKDG-QMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQV----LEKIFDLNS 378 (1128)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhcch-hhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHH----HHHHHhCcc
Confidence 44588999999999865554433221 233 24466677888888888899999999999999985 455554433
Q ss_pred h-hHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhC
Q 000832 427 S-ATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLG 462 (1263)
Q Consensus 427 ~-~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLk 462 (1263)
. .--+..+..++-.-.+|.+.-||--+++-+..+|-
T Consensus 379 k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 379 KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 2 22333444566666699999999999998888774
No 103
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.96 E-value=1.8e+02 Score=38.18 Aligned_cols=276 Identities=17% Similarity=0.218 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhCC----hhHHHHHHHHHHHHhccCCC---chHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCch
Q 000832 414 CCRILHLFWELIP----SATITKIITKIFDDNSHDLC---NEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVL 486 (1263)
Q Consensus 414 VcriLskfWEiIP----~~~I~slL~~If~~LAkDsQ---DSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSW 486 (1263)
+.+.|-.|||++| .......+.=+-+..=+|=| --||=.++.=++.|=+ .+.++.+.|.++..++-+--
T Consensus 73 lKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE----~ELlepl~p~IracleHrhs 148 (948)
T KOG1058|consen 73 LKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKE----PELLEPLMPSIRACLEHRHS 148 (948)
T ss_pred HHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCc----HHHhhhhHHHHHHHHhCcch
Q ss_pred HHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhcCchHHHHHHHHHhcccCCCCCCChHHHhHHH--HHHHhcChHHH
Q 000832 487 SVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALANDQSQVAQKITRLLMPSYFPLKVNIKEACSRC--VTIVKRSPVAG 564 (1263)
Q Consensus 487 RVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~Ds~~V~k~IvkLLipSfFP~k~s~~E~~~RC--i~Lik~nP~Aa 564 (1263)
=||.++.=.+-.|=+...+-|-+. ++-+-.-|..|..+. |+|= +.|...+|+-|
T Consensus 149 YVRrNAilaifsIyk~~~~L~pDa--peLi~~fL~~e~Dps----------------------CkRNAFi~L~~~D~ErA 204 (948)
T KOG1058|consen 149 YVRRNAILAIFSIYKNFEHLIPDA--PELIESFLLTEQDPS----------------------CKRNAFLMLFTTDPERA 204 (948)
T ss_pred hhhhhhheeehhHHhhhhhhcCCh--HHHHHHHHHhccCch----------------------hHHHHHHHHHhcCHHHH
Q ss_pred HHHHHHHhhcCCC---------------------hHHHHHHHHHHHHhhccCCCC-----------ChhHHHHHHHHHHH
Q 000832 565 ARFCEFAVSEGAP---------------------LESLVELVTVFIRLVLSHDKL-----------DEDQIEGLLAAVSY 612 (1263)
Q Consensus 565 ~~Fy~~a~~~~a~---------------------~~~l~~Li~~ll~~~ls~~k~-----------~~e~~eg~~~a~a~ 612 (1263)
..|-.--. ..++ ++--...|++++++..+.+.. ....-+.+..|.+-
T Consensus 205 l~Yl~~~i-dqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~ 283 (948)
T KOG1058|consen 205 LNYLLSNI-DQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAAST 283 (948)
T ss_pred HHHHHhhH-hhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHH
Q ss_pred HHhhhhhhHhHHHHHHhHhhhhhHHHHHHhhccccccchhhhhhcccCCCchhHHHHHHHhhhhhcCCCChhhhhHHHHH
Q 000832 613 LCKDIAREQCYKNALKELFANDKVKSLFAAASTGRARSSVFEIVSTVSPDNVVGLLEQCMGLISKCKGLSEDEERQAEVR 692 (1263)
Q Consensus 613 L~~~L~~~~~~k~~l~~l~~g~~l~~ll~~a~t~~a~sa~~~I~s~~~~~~~~~~~~~c~~~~~~~~g~~~~~~~q~~~~ 692 (1263)
++.-+..++-|-.+|--+--=-.++ +.-..--+.-+..|.+++++.|+ ++-+.|.+++ =+|.+.-+-.+-+.
T Consensus 284 ~i~l~~kesdnnvklIvldrl~~l~----~~~~~il~~l~mDvLrvLss~dl-dvr~Ktldi~---ldLvssrNvediv~ 355 (948)
T KOG1058|consen 284 YIDLLVKESDNNVKLIVLDRLSELK----ALHEKILQGLIMDVLRVLSSPDL-DVRSKTLDIA---LDLVSSRNVEDIVQ 355 (948)
T ss_pred HHHHHHhccCcchhhhhHHHHHHHh----hhhHHHHHHHHHHHHHHcCcccc-cHHHHHHHHH---HhhhhhccHHHHHH
Q ss_pred HHhHHhhccCCh-hHHHHHHHHHHHHHHhhhhhcc
Q 000832 693 SAHKLLLSSCAF-DDMLEALTMLLQKAVYRCHVKF 726 (1263)
Q Consensus 693 sa~~~~~s~~~~-d~~~~~l~~~l~~~~~~~~~~~ 726 (1263)
=--|=+.-..+- -|=-+.....|-++-.-|+++|
T Consensus 356 ~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~F 390 (948)
T KOG1058|consen 356 FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKF 390 (948)
T ss_pred HHHHHHHhccccccccchHHHHHHHHHHHHHhhcC
No 104
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=71.47 E-value=39 Score=43.39 Aligned_cols=113 Identities=14% Similarity=0.206 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHh---hCC--hhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhh
Q 000832 387 LFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWE---LIP--SATITKIITKIFDDNSHDLCNEVRLATVNGIIYLL 461 (1263)
Q Consensus 387 EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWE---iIP--~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLL 461 (1263)
.+.+||..+..|+..++...|-+-++-+..+...|.. ++. ++.+.+++.-+...| .|..+-+|--++.++..|.
T Consensus 296 i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl-~D~~py~RtKalqv~~kif 374 (1128)
T COG5098 296 IMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERL-SDTYPYTRTKALQVLEKIF 374 (1128)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHH
Confidence 4788999999999999999999888743333333321 121 235555555455555 7888999999999999999
Q ss_pred CCCCchHHHHh-HHHhhhhhcCCCchHHHHHHHHHHHHhh
Q 000832 462 GNPLSHEVLKV-LLPRLGHLMQDNVLSVRLAMADLLLLLR 500 (1263)
Q Consensus 462 kn~~She~Lk~-LLP~LksLI~DkSWRVRyAfADLLleLk 500 (1263)
+.+..-.--++ +.-.+...++|+|--||..++.++-++-
T Consensus 375 dl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 375 DLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred hCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 87765443333 4455567789999999999999987754
No 105
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=71.23 E-value=30 Score=41.79 Aligned_cols=145 Identities=18% Similarity=0.169 Sum_probs=79.4
Q ss_pred HHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHH
Q 000832 342 FNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLF 421 (1263)
Q Consensus 342 ~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskf 421 (1263)
...|..||. +.++. ..-+.=|+-+++-+|...++=+ ++.+..| .+||.|+.-.|||.|+++++..-..
T Consensus 24 v~~y~~il~-~~k~~-~k~k~lasq~ip~~fk~fp~la-----~~a~da~----~d~~ed~d~~ir~qaik~lp~fc~~- 91 (460)
T KOG2213|consen 24 VDDYEGILK-AVKGT-SKEKRLASQFIPRFFKHFPSLA-----DEAIDAQ----LDLCEDDDVGIRRQAIKGLPLFCKG- 91 (460)
T ss_pred HHHHHHHHH-Hhhcc-hHHHHHHHHHHHHHHhhCchhh-----hHHHHhh----hccccccchhhHHHHHhccchhccC-
Confidence 456888886 44443 3556667778888888775422 3334444 6899999999999999985332211
Q ss_pred HhhCC--hhHHH-----HHHHHHHHHhccCCCchHHHHHHHHHHHhhC----CCCchHHHHhHHHhhhhhcCCCchHHHH
Q 000832 422 WELIP--SATIT-----KIITKIFDDNSHDLCNEVRLATVNGIIYLLG----NPLSHEVLKVLLPRLGHLMQDNVLSVRL 490 (1263)
Q Consensus 422 WEiIP--~~~I~-----slL~~If~~LAkDsQDSVRlaVVeGLiaLLk----n~~She~Lk~LLP~LksLI~DkSWRVRy 490 (1263)
+.++ .++.. ..+..+|..... .-+.+|.-++.=++.=+. .....++-.+++.-++..+.|---.==.
T Consensus 92 -d~~~rv~d~l~qLLnk~sl~~Lf~~~~~-~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~ 169 (460)
T KOG2213|consen 92 -DALSRVNDVLVQLLNKASLTGLFGQIEV-GDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFT 169 (460)
T ss_pred -chhhhhHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHH
Confidence 2222 12222 223345544433 234577777654433221 1112444445666666666665544444
Q ss_pred HHHHHHHHhh
Q 000832 491 AMADLLLLLR 500 (1263)
Q Consensus 491 AfADLLleLk 500 (1263)
+|.+.|..++
T Consensus 170 lfm~~L~~lk 179 (460)
T KOG2213|consen 170 LFMDILASLK 179 (460)
T ss_pred HHHHHHHhhh
Confidence 4455444433
No 106
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=70.58 E-value=44 Score=39.33 Aligned_cols=122 Identities=13% Similarity=0.166 Sum_probs=82.1
Q ss_pred HHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHH--HHHhhCC
Q 000832 349 MFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILH--LFWELIP 426 (1263)
Q Consensus 349 LwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLs--kfWEiIP 426 (1263)
+.+..+.++|.+=+-|-..|.+++-...+ ..++-......+.|..+.+|+..+....||.+.+=+..+|- ...+++.
T Consensus 169 ff~~~~~~~Fdiasdaf~t~~~llt~hk~-~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~ 247 (335)
T PF08569_consen 169 FFKYVQLPNFDIASDAFSTFKELLTRHKK-LVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMT 247 (335)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHHSSHH-HHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHHHhcCCccHhHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHH
Confidence 44567889999999999999988777533 44444555566677778999999999999999984333331 0112222
Q ss_pred hhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHH
Q 000832 427 SATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLK 471 (1263)
Q Consensus 427 ~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk 471 (1263)
.-+....-.+++..|-+|.+..+|.-++..+-..+.||..-+-+.
T Consensus 248 ~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~ 292 (335)
T PF08569_consen 248 RYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIV 292 (335)
T ss_dssp HHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHH
T ss_pred HHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHH
Confidence 222233345688889999999999999999988888888644333
No 107
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=70.51 E-value=70 Score=38.27 Aligned_cols=179 Identities=20% Similarity=0.169 Sum_probs=112.9
Q ss_pred HHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchH---HHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhH
Q 000832 340 MLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKE---VKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCR 416 (1263)
Q Consensus 340 mL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rE---e~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcr 416 (1263)
.+-+-|.|.++|.+.++...|+.=||.-..-+..-+|.+.-.+ ..++++.+|. ..-...+.-.|-.||++.+.+
T Consensus 78 hlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkli---ldcIggeddeVAkAAiesikr 154 (524)
T KOG4413|consen 78 HLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLI---LDCIGGEDDEVAKAAIESIKR 154 (524)
T ss_pred hhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHH---HHHHcCCcHHHHHHHHHHHHH
Confidence 3556789999999999999999999998888877777543222 1133444443 677778888999999997655
Q ss_pred HHHHHHhhCChhHHHHHHHHH-HHHhccCCCchHHHHHHHHHHHhhCC-CCch-HHHHh-HHHhhhhhcC-CCchHHHHH
Q 000832 417 ILHLFWELIPSATITKIITKI-FDDNSHDLCNEVRLATVNGIIYLLGN-PLSH-EVLKV-LLPRLGHLMQ-DNVLSVRLA 491 (1263)
Q Consensus 417 iLskfWEiIP~~~I~slL~~I-f~~LAkDsQDSVRlaVVeGLiaLLkn-~~Sh-e~Lk~-LLP~LksLI~-DkSWRVRyA 491 (1263)
+ +.|-..+..-.-.+++.++ ...|+-..+|-||+-|++-++.|... +.+- ++-+. ++..+..=+. -+.--||..
T Consensus 155 i-alfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVian 233 (524)
T KOG4413|consen 155 I-ALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIAN 233 (524)
T ss_pred H-HhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhh
Confidence 4 3222222211111222222 23455556677888888888887653 2222 22222 5554433333 367789999
Q ss_pred HHHHHHHhhccc-CCceeeecChHHHHHHHhc
Q 000832 492 MADLLLLLRDIR-TFQFNKVVGLDILLSALAN 522 (1263)
Q Consensus 492 fADLLleLk~ir-giKF~~VV~~D~LLaRLa~ 522 (1263)
+.++..++...- |-.|--.-++-+++..+..
T Consensus 234 ciElvteLaeteHgreflaQeglIdlicnIIs 265 (524)
T KOG4413|consen 234 CIELVTELAETEHGREFLAQEGLIDLICNIIS 265 (524)
T ss_pred HHHHHHHHHHHhhhhhhcchhhHHHHHHHHhh
Confidence 999998888654 3556666666666665544
No 108
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=69.92 E-value=15 Score=45.62 Aligned_cols=133 Identities=19% Similarity=0.135 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCC------CchHHHHH--HH
Q 000832 384 KDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDL------CNEVRLAT--VN 455 (1263)
Q Consensus 384 ~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDs------QDSVRlaV--Ve 455 (1263)
.-.|++..|..+.+.|.+..+.-|.+|-+.+ ..+--...|.+-|..+..|. +...|++. +.
T Consensus 201 LS~ElQlYy~~It~a~~g~~~~~r~eAL~sL-----------~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~ 269 (576)
T KOG2549|consen 201 LSVELQLYYKEITEACTGSDEPLRQEALQSL-----------ETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMR 269 (576)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------ccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHH
Confidence 3467888888889999999999999998742 22222223333333333332 22333333 56
Q ss_pred HHHHhhCCCCc--hHHHHhHHHhhhhh----------cCCCchHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhcC
Q 000832 456 GIIYLLGNPLS--HEVLKVLLPRLGHL----------MQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALAND 523 (1263)
Q Consensus 456 GLiaLLkn~~S--he~Lk~LLP~LksL----------I~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~D 523 (1263)
-..+|++|+.. ++++++|+|.+..+ -.|+-|-+|--+|+++..|++.++-.++.
T Consensus 270 m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-------------- 335 (576)
T KOG2549|consen 270 MVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-------------- 335 (576)
T ss_pred HHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH--------------
Confidence 67788999987 88999999988664 34889999999999999888777666654
Q ss_pred chHHHHHHHHHhcccCCCCCC
Q 000832 524 QSQVAQKITRLLMPSYFPLKV 544 (1263)
Q Consensus 524 s~~V~k~IvkLLipSfFP~k~ 544 (1263)
...+|++-|...|.-.+.
T Consensus 336 ---L~~Rit~tl~k~l~D~~~ 353 (576)
T KOG2549|consen 336 ---LQPRITRTLSKALLDNKK 353 (576)
T ss_pred ---HHHHHHHHHHHHhcCCCC
Confidence 345555556555554433
No 109
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=69.21 E-value=2.3e+02 Score=32.99 Aligned_cols=141 Identities=19% Similarity=0.251 Sum_probs=79.6
Q ss_pred hHHHHHHhhHHHHHHhhcCCc--hHHHHHHHHHhH-hhcCCCCCccchHHHH---HHHHHHHHHHh--------hhcCCC
Q 000832 337 VEKMLFNLTEPVMFRSLQAAN--SNVRQNALHLLL-DLFPLEDPDATKEVKD---TLFDKQFFLLE--------KLLTDD 402 (1263)
Q Consensus 337 VdemL~rLY~PILwRLLka~N--ftVR~SA~~LF~-~AFPlvdpd~~rEe~d---~EL~kQF~~L~--------~LL~DD 402 (1263)
..+.+++...|+|.+.++... ..+|.+++.-++ ..|--... . ++.. +.|...|.... .....|
T Consensus 122 ~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d-~--~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~ 198 (309)
T PF05004_consen 122 DSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSD-E--EETEELMESLESIFLLSILKSDGNAPVVAAED 198 (309)
T ss_pred cHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC-h--hHHHHHHHHHHHHHHHHhcCcCCCcccccCCC
Confidence 356788888999999888654 457777663333 33332222 1 1222 23443442111 112233
Q ss_pred ChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHH---HhccCCCchHHHHHHHHHHHhhCCCCc------hHHHHhH
Q 000832 403 CPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFD---DNSHDLCNEVRLATVNGIIYLLGNPLS------HEVLKVL 473 (1263)
Q Consensus 403 tPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~---~LAkDsQDSVRlaVVeGLiaLLkn~~S------he~Lk~L 473 (1263)
.|.|..+|..+-+-.+ -.+|...+...+...+. .+..-+..+||+++=+++.-|-+.... .+....+
T Consensus 199 ~~~l~~aAL~aW~lLl----t~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l 274 (309)
T PF05004_consen 199 DAALVAAALSAWALLL----TTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEEL 274 (309)
T ss_pred ccHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHH
Confidence 4789999998754444 36776555554443333 333333568999999988777543222 2345557
Q ss_pred HHhhhhhcCCC
Q 000832 474 LPRLGHLMQDN 484 (1263)
Q Consensus 474 LP~LksLI~Dk 484 (1263)
+..++.+..|.
T Consensus 275 ~~~l~~La~dS 285 (309)
T PF05004_consen 275 LEQLRELATDS 285 (309)
T ss_pred HHHHHHHHHhc
Confidence 77777777664
No 110
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=68.77 E-value=67 Score=41.63 Aligned_cols=128 Identities=18% Similarity=0.104 Sum_probs=76.8
Q ss_pred HHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHH
Q 000832 342 FNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLF 421 (1263)
Q Consensus 342 ~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskf 421 (1263)
++.+.|+|..++.+.+...|.+..--.+.+|---+.. .-++++. ---..|..-.|||+|+.+++-+|.+=
T Consensus 517 qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn-------kair~lL---h~aVsD~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 517 QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN-------KAIRRLL---HVAVSDVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch-------hhHHHhh---cccccccchHHHHHHHHHheeeEecC
Confidence 3478899999999999999998777777777654321 2233222 44578999999999999865555422
Q ss_pred HhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHH
Q 000832 422 WELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAM 492 (1263)
Q Consensus 422 WEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAf 492 (1263)
-+..| .++.-|+.--...||..+--+|-.-.......+.+. .|-.++.|+.-=||..+
T Consensus 587 p~~~~---------s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~----lLepl~~D~~~fVRQgA 644 (929)
T KOG2062|consen 587 PEQLP---------STVSLLSESYNPHVRYGAAMALGIACAGTGLKEAIN----LLEPLTSDPVDFVRQGA 644 (929)
T ss_pred hhhch---------HHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHH----HHhhhhcChHHHHHHHH
Confidence 22222 222223333357777776555443333333333333 23334557777777644
No 111
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=66.72 E-value=1.8e+02 Score=37.32 Aligned_cols=169 Identities=15% Similarity=0.208 Sum_probs=103.3
Q ss_pred HhhccCCHHHHHHHHHHHhhHhhcCCCc---chHH------------HHHHhhHHHHHHhhcCCchHHHHHHHHHhH---
Q 000832 308 GAIHASSRAFAASIRRVLGGFVNQRTTP---GVEK------------MLFNLTEPVMFRSLQAANSNVRQNALHLLL--- 369 (1263)
Q Consensus 308 ~AIha~s~~lAaklR~VLs~FHsqK~~k---gVde------------mL~rLY~PILwRLLka~NftVR~SA~~LF~--- 369 (1263)
.+++.. +.+..-+|++|+.+.+.|.+- ++.. .++.--+..++-.+++.+-..|.+|.-++-
T Consensus 253 ~ll~~n-~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~la 331 (898)
T COG5240 253 ELLKEN-SQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLA 331 (898)
T ss_pred HHHHhC-hHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 334443 677889999999999987631 2333 333334445678899999999999988764
Q ss_pred hhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchH
Q 000832 370 DLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEV 449 (1263)
Q Consensus 370 ~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSV 449 (1263)
..||..=.-.+ .++ +.|..|..-.+-.-|+.-+ | ..-..+.|.. |.+.+..+.+|-+|.-
T Consensus 332 m~~P~kv~vcN-----~ev-------EsLIsd~Nr~IstyAITtL---L----KTGt~e~idr-Lv~~I~sfvhD~SD~F 391 (898)
T COG5240 332 MKYPQKVSVCN-----KEV-------ESLISDENRTISTYAITTL---L----KTGTEETIDR-LVNLIPSFVHDMSDGF 391 (898)
T ss_pred hhCCceeeecC-----hhH-------HHHhhcccccchHHHHHHH---H----HcCchhhHHH-HHHHHHHHHHhhccCc
Confidence 56775432221 223 6777887766666666532 2 2333444444 4456777889999999
Q ss_pred HHHHHHHHHHhhCCCCchHHHHhHHHhhhhh-cCCCchHHHHHHHHHHHHh
Q 000832 450 RLATVNGIIYLLGNPLSHEVLKVLLPRLGHL-MQDNVLSVRLAMADLLLLL 499 (1263)
Q Consensus 450 RlaVVeGLiaLLkn~~She~Lk~LLP~LksL-I~DkSWRVRyAfADLLleL 499 (1263)
+.-+++++..+--+..+... .+|.-+.+. .+.--.+-..+++|.+.++
T Consensus 392 KiI~ida~rsLsl~Fp~k~~--s~l~FL~~~L~~eGg~eFK~~~Vdaisd~ 440 (898)
T COG5240 392 KIIAIDALRSLSLLFPSKKL--SYLDFLGSSLLQEGGLEFKKYMVDAISDA 440 (898)
T ss_pred eEEeHHHHHHHHhhCcHHHH--HHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 99999999888655443221 122333332 2233455555566655443
No 112
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=66.53 E-value=1.5e+02 Score=31.76 Aligned_cols=131 Identities=17% Similarity=0.154 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCce
Q 000832 428 ATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQF 507 (1263)
Q Consensus 428 ~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF 507 (1263)
..+...+..|++ ++.+..+.||.++++.+..+++.-..|+. +.+|.+-.+..|++..||-.+.+++.++.+. +
T Consensus 4 ~l~Qryl~~Il~-~~~~~~~~vr~~Al~~l~~il~qGLvnP~--~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK----~ 76 (187)
T PF12830_consen 4 ALVQRYLKNILE-LCLSSDDSVRLAALQVLELILRQGLVNPK--QCVPTLIALETSPNPSIRSRAYQLLKELHEK----H 76 (187)
T ss_pred HHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHhcCCCChH--HHHhHhhhhhCCCChHHHHHHHHHHHHHHHH----h
Confidence 445566666666 77888999999999999999987777765 5789999999999999999999998777532 2
Q ss_pred eeecChHHHHHHHhcCchHHHHHHHHHhcccCCCCC-CChHHHhHHHHHHHhcChHHHHHHHHHH
Q 000832 508 NKVVGLDILLSALANDQSQVAQKITRLLMPSYFPLK-VNIKEACSRCVTIVKRSPVAGARFCEFA 571 (1263)
Q Consensus 508 ~~VV~~D~LLaRLa~Ds~~V~k~IvkLLipSfFP~k-~s~~E~~~RCi~Lik~nP~Aa~~Fy~~a 571 (1263)
-.. +..-..+.=+.+=...+-+.+.-+... ........+..++++.++..-++|..-.
T Consensus 77 ~s~------v~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l 135 (187)
T PF12830_consen 77 ESL------VESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSL 135 (187)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHH
Confidence 222 222122211111222222333322111 1144566777888887877777776544
No 113
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=66.36 E-value=35 Score=43.62 Aligned_cols=100 Identities=18% Similarity=0.175 Sum_probs=76.8
Q ss_pred HHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHhhCCCCchHH
Q 000832 391 QFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDL-CNEVRLATVNGIIYLLGNPLSHEV 469 (1263)
Q Consensus 391 QF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDs-QDSVRlaVVeGLiaLLkn~~She~ 469 (1263)
....|..-+.|+++.+-..+.+ +++.+.|.++-..+++.|.|-+..++.-. +..||+-++.++..+++...+-.+
T Consensus 390 IlplL~~S~~~~~~~iQ~~~L~----~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v 465 (700)
T KOG2137|consen 390 ILPLLYRSLEDSDVQIQELALQ----ILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAV 465 (700)
T ss_pred HHHHHHHHhcCcchhhHHHHHH----hhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445577788888888887777 68999999999999999999999987766 578999999999999988777788
Q ss_pred HHhHHHhhhhhcCCCchHHHHHHHHH
Q 000832 470 LKVLLPRLGHLMQDNVLSVRLAMADL 495 (1263)
Q Consensus 470 Lk~LLP~LksLI~DkSWRVRyAfADL 495 (1263)
++.++|.++.. +=+-.++=+++...
T Consensus 466 ~d~~lpi~~~~-~~~dp~iv~~~~~i 490 (700)
T KOG2137|consen 466 LDELLPILKCI-KTRDPAIVMGFLRI 490 (700)
T ss_pred HHHHHHHHHHh-cCCCcHHHHHHHHH
Confidence 88888887654 22223344444443
No 114
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.84 E-value=62 Score=38.28 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=93.3
Q ss_pred HhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHH
Q 000832 351 RSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATI 430 (1263)
Q Consensus 351 RLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I 430 (1263)
+.+..++|...+.+...+--. .....|.....|.+..-.+.+-|+..--.|=|+|+.- ++..+..... .+
T Consensus 95 ~~L~s~dW~~~vdgLn~irrL-----s~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t----~~difs~ln~-~i 164 (334)
T KOG2933|consen 95 KKLSSDDWEDKVDGLNSIRRL-----SEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMT----LADIFSSLNN-SI 164 (334)
T ss_pred HHhchHHHHHHhhhHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH----HHHHHHHHHH-HH
Confidence 456667778777766655432 1123344566666666666777888877777777774 5555555543 33
Q ss_pred HHHHHHHHHHhccCC-Cc--hHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhc
Q 000832 431 TKIITKIFDDNSHDL-CN--EVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRD 501 (1263)
Q Consensus 431 ~slL~~If~~LAkDs-QD--SVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~ 501 (1263)
.+.+..++..|..-. || -||-.+-++|.+|.+.-.....+.+|.|.++ -...|||..++-.|.....
T Consensus 165 ~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~----~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 165 DQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQ----HSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHh----hhchhhhhhhhccccccce
Confidence 346777777776655 33 5999999999999998888888877777754 5678999988887544433
No 115
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.30 E-value=28 Score=44.65 Aligned_cols=111 Identities=20% Similarity=0.126 Sum_probs=77.4
Q ss_pred HHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHH
Q 000832 341 LFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHL 420 (1263)
Q Consensus 341 L~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLsk 420 (1263)
...+..+.+-+=.+.+||..|.=|..-.... . .+......++-|.+.++|+.|.||++|+.++ .+
T Consensus 83 ~a~~avnt~~kD~~d~np~iR~lAlrtm~~l--~---------v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~v----ak 147 (734)
T KOG1061|consen 83 LAILAVNTFLKDCEDPNPLIRALALRTMGCL--R---------VDKITEYLCDPLLKCLKDDDPYVRKTAAVCV----AK 147 (734)
T ss_pred HHHhhhhhhhccCCCCCHHHHHHHhhceeeE--e---------ehHHHHHHHHHHHHhccCCChhHHHHHHHHH----HH
Confidence 3456667777778888999998777655432 1 2344555677789999999999999999964 55
Q ss_pred HHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCc
Q 000832 421 FWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLS 466 (1263)
Q Consensus 421 fWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~S 466 (1263)
+...=+......=+.....+|..|+.+.|=..++-++..|.+...+
T Consensus 148 l~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 148 LFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred hhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 5544433333333344555566688889999999999999876543
No 116
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=64.31 E-value=2.4e+02 Score=31.37 Aligned_cols=184 Identities=15% Similarity=0.143 Sum_probs=105.3
Q ss_pred HHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCCh
Q 000832 348 VMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPS 427 (1263)
Q Consensus 348 ILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~ 427 (1263)
++.++.+..+.++.......++..-..-+ .......+++..|...+...+|-.+.. .+..+|..=+.
T Consensus 5 L~~~l~~~~~~~~~~~~L~~L~~l~~~~~---------~~~~~v~~~L~~L~~~~~~~~~~~~~r----Ll~~lw~~~~r 71 (234)
T PF12530_consen 5 LLYKLGKISDPELQLPLLEALPSLACHKN---------VCVPPVLQTLVSLVEQGSLELRYVALR----LLTLLWKANDR 71 (234)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHhccCc---------cchhHHHHHHHHHHcCCchhHHHHHHH----HHHHHHHhCch
Confidence 34445666666665555555554322211 112222345577777777777555554 67888988775
Q ss_pred hHHHHHHHHHHHH-------hccCCC--chHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhc-CCCchHHHHHHHHHHH
Q 000832 428 ATITKIITKIFDD-------NSHDLC--NEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLM-QDNVLSVRLAMADLLL 497 (1263)
Q Consensus 428 ~~I~slL~~If~~-------LAkDsQ--DSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI-~DkSWRVRyAfADLLl 497 (1263)
.. .+|.+++.. ...+++ ..+.++.-.++..+...... .-..+++.|..++ ++.+..++-...+.+.
T Consensus 72 ~f--~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 72 HF--PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred HH--HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 42 334433333 122222 33444322233333332222 4445888888888 8999999999999999
Q ss_pred HhhcccCCceeeecChHHHHHHHhcCc-hHHHHHHHHHhcccCCCCCCChHHHhHH
Q 000832 498 LLRDIRTFQFNKVVGLDILLSALANDQ-SQVAQKITRLLMPSYFPLKVNIKEACSR 552 (1263)
Q Consensus 498 eLk~irgiKF~~VV~~D~LLaRLa~Ds-~~V~k~IvkLLipSfFP~k~s~~E~~~R 552 (1263)
.+++.--+.|... .+.+...|..|. |.|.+.+++++. ++|...-+.|+...
T Consensus 148 ~Lc~~~vvd~~s~--w~vl~~~l~~~~rp~v~~~l~~l~~--l~~~~~~~~e~~~~ 199 (234)
T PF12530_consen 148 PLCEAEVVDFYSA--WKVLQKKLSLDYRPLVLKSLCSLFA--LVPQGAVDSEEYEE 199 (234)
T ss_pred HHHHHhhccHHHH--HHHHHHhcCCccchHHHHHHHHHHH--HhccccCChhhhhH
Confidence 9996665555443 244455665554 567777777665 56666555555544
No 117
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=62.91 E-value=53 Score=35.40 Aligned_cols=119 Identities=17% Similarity=0.210 Sum_probs=79.3
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhC
Q 000832 346 EPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELI 425 (1263)
Q Consensus 346 ~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiI 425 (1263)
.|.+-++....|..-...|..++..- |..+|+. .=+.|...| ..+.||.-|+.. |. .+
T Consensus 41 L~~~l~sv~w~~~~~v~e~~~lL~~W-~~i~~~~----aLeLL~~~f---------~d~~VR~yAV~~----L~----~~ 98 (171)
T cd00872 41 LPKLLLSVKWNKRDDVAQMYQLLKRW-PKLKPEQ----ALELLDCNF---------PDEHVREFAVRC----LE----KL 98 (171)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHHCC-CCCCHHH----HHHHCCCcC---------CCHHHHHHHHHH----HH----hC
Confidence 34444555566666666666666654 3444421 112222222 349999999984 55 47
Q ss_pred ChhHHHHHHHHHHHHhccCC---CchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHH
Q 000832 426 PSATITKIITKIFDDNSHDL---CNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMA 493 (1263)
Q Consensus 426 P~~~I~slL~~If~~LAkDs---QDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfA 493 (1263)
+.+.+...|.++++.|=.|. ++-+|++.=.++. +...-+.++-.++.-++|++++.||+..
T Consensus 99 sd~eL~~yL~QLVQaLKyE~~~ds~La~FLl~Ral~-------n~~igh~lfW~L~~E~~~~~~~~R~~~~ 162 (171)
T cd00872 99 SDDELLQYLLQLVQVLKYEPYHDSDLVRFLLKRALR-------NQRIGHFFFWHLRSEMHNPSVSQRFGLL 162 (171)
T ss_pred CHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHhc-------CHHHHHHHHHHHHHhhcChHHHHHHHHH
Confidence 88999999999999998885 4557776655543 1234456888999999999999999864
No 118
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=62.31 E-value=75 Score=33.48 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=81.9
Q ss_pred hcCCHHHHHHHHHHHHhhhccCcHHHHHHHhHHHHhhhcccchhhHHHHHHhHHHHHHHHh-hccCCHHHHHHHHHHHhh
Q 000832 249 FGLSKPMLKDVLAMIKSQISFERKSMLEAYGDVLYRAWKGVEEGFREDVESGFLQVLIEGA-IHASSRAFAASIRRVLGG 327 (1263)
Q Consensus 249 Fgl~~~Lik~ih~tIKnQLp~~~kS~le~YGEIyFrAWK~A~gd~~eeIE~~cIQdLm~~A-Iha~s~~lAaklR~VLs~ 327 (1263)
+|+...-++.+-+.+...++.. +.+=+.....|.....+. ..+-.++-.. ...-++... ..+..
T Consensus 28 ~GV~~p~lr~lak~~~~~~~~~-----~~~~~l~~~L~~~~~~E~------~~la~~il~~~~~~~~~~~~----~~~~~ 92 (213)
T PF08713_consen 28 LGVRTPDLRKLAKDIYKELKLS-----EELYELADELWESGYREE------RYLALLILDKRRKKLTEEDL----ELLEK 92 (213)
T ss_dssp ----HHHHHHHHHHHHHHHCTS-----HHHHHHHHHHHCSSCHHH------HHHHHHHHHHCGGG--HHHH----HHHHH
T ss_pred cCcCcHHHHHHHHHHHhhcccc-----hHHHHHHHHHcCCchHHH------HHHHHHHhHHHhhhhhHHHH----HHHHH
Confidence 5888888888887777777654 444466677888754221 1111111111 000011111 22222
Q ss_pred HhhcCCCc----c-----hHHHHH--HhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHh
Q 000832 328 FVNQRTTP----G-----VEKMLF--NLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLE 396 (1263)
Q Consensus 328 FHsqK~~k----g-----VdemL~--rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~ 396 (1263)
|...-..- . +.+.+. ..+.|.+...++++|.-+|..|+-++...+-. . .+...+..+.
T Consensus 93 ~~~~~~~W~~~D~~~~~~~~~~~~~~~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~---------~~~~~l~~~~ 161 (213)
T PF08713_consen 93 WLPDIDNWATCDSLCSKLLGPLLKKHPEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--E---------DFDELLEIIE 161 (213)
T ss_dssp CCCCCCCHHHHHHHTHHHHHHHHHHHGGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--C---------HHHHHHHHHH
T ss_pred HhccCCcchhhhHHHHHHHHHHHHhhHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--c---------CHHHHHHHHH
Confidence 22221110 0 112221 34778888899999999999888777655444 1 2334466668
Q ss_pred hhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHH
Q 000832 397 KLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITK 436 (1263)
Q Consensus 397 ~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~ 436 (1263)
.++.|+.+.||.+.+-. |..+-..- ++.+..+|..
T Consensus 162 ~~~~d~~~~vq~ai~w~----L~~~~~~~-~~~v~~~l~~ 196 (213)
T PF08713_consen 162 ALLKDEEYYVQKAIGWA----LREIGKKD-PDEVLEFLQK 196 (213)
T ss_dssp HCTTGS-HHHHHHHHHH----HHHHCTT--HHHHHHHHHH
T ss_pred HHcCCchHHHHHHHHHH----HHHHHHhC-HHHHHHHHHH
Confidence 99999999999988763 44444332 3444444443
No 119
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=61.58 E-value=1.5e+02 Score=31.33 Aligned_cols=118 Identities=19% Similarity=0.161 Sum_probs=72.0
Q ss_pred HHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHH
Q 000832 339 KMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRIL 418 (1263)
Q Consensus 339 emL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriL 418 (1263)
+.....+.--+-.++++.+...|--+++|........+++...+....-++..+..+++ ++.|.++.+|+.-+.+++
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~---~~~~~~~~~ai~~L~~l~ 96 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK---PDPPSVLEAAIITLTRLF 96 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHH
Confidence 33344444446778888889999999999999888876665444445555555533333 567778888887554444
Q ss_pred HHHHhhCC-------hhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCC
Q 000832 419 HLFWELIP-------SATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGN 463 (1263)
Q Consensus 419 skfWEiIP-------~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn 463 (1263)
.. -.-.| .+.+..++..+++-+ +| ..+...+++++..++..
T Consensus 97 ~~-~~~~p~l~Rei~tp~l~~~i~~ll~l~-~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 97 DL-IRGKPTLTREIATPNLPKFIQSLLQLL-QD--SSCPETALDALATLLPH 144 (165)
T ss_pred HH-hcCCCchHHHHhhccHHHHHHHHHHHH-hc--cccHHHHHHHHHHHHHH
Confidence 32 11122 223333444444322 22 67888888888888874
No 120
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=60.60 E-value=4.8e+02 Score=33.73 Aligned_cols=297 Identities=16% Similarity=0.178 Sum_probs=158.7
Q ss_pred CCCcchHHHHHHhhHHHHHHhhcCCc-----hHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHH
Q 000832 332 RTTPGVEKMLFNLTEPVMFRSLQAAN-----SNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDV 406 (1263)
Q Consensus 332 K~~kgVdemL~rLY~PILwRLLka~N-----ftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMV 406 (1263)
+.+..|+..++..|..|+.-+.++.+ +..|+++-.-+....-..++ .-. ..+-..|.+..+=+ |+|-.|
T Consensus 483 ~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d-~V~----~~~a~~~~~~~~kl-~~~isv 556 (858)
T COG5215 483 KAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPD-AVS----DILAGFYDYTSKKL-DECISV 556 (858)
T ss_pred hhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch-hHH----HHHHHHHHHHHHHH-HHHHHH
Confidence 55667899999999999999887754 67888776655554444432 211 11222222111111 111111
Q ss_pred HH--------HHH----hhhhHHHHHHHhhCCh--hHHHHHHHHHHHH-hccCCCchHHHHHHHHHHHhhCCCCc--hHH
Q 000832 407 RV--------VAV----EGCCRILHLFWELIPS--ATITKIITKIFDD-NSHDLCNEVRLATVNGIIYLLGNPLS--HEV 469 (1263)
Q Consensus 407 RR--------AAA----~gVcriLskfWEiIP~--~~I~slL~~If~~-LAkDsQDSVRlaVVeGLiaLLkn~~S--he~ 469 (1263)
-. +-. .+.|.+|.......++ +...+.|..+|-. |-+-++.-+---|+-++.++...+.. +..
T Consensus 557 ~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y 636 (858)
T COG5215 557 LGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQY 636 (858)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11 001 1223333333333443 3444544444433 33333433333334444444332211 344
Q ss_pred HHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhcC-chHHHHHHHHHhcccCCCCCCChHH
Q 000832 470 LKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALAND-QSQVAQKITRLLMPSYFPLKVNIKE 548 (1263)
Q Consensus 470 Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~D-s~~V~k~IvkLLipSfFP~k~s~~E 548 (1263)
...+.|.+.+.++-..--|=-.++.+..+|++..|.+|.--+ |.+..+|.-+ +.++.++
T Consensus 637 ~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~--d~~ms~LvQ~lss~~~~R------------------ 696 (858)
T COG5215 637 ASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYA--DVLMSSLVQCLSSEATHR------------------ 696 (858)
T ss_pred HhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHhcChhhcc------------------
Confidence 556788888777777777888888999999999998886442 4445554443 1112111
Q ss_pred HhHHHHHHHhcChHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCChhH-HHHHHH-HHHHHHhhhhh-hHhHHH
Q 000832 549 ACSRCVTIVKRSPVAGARFCEFAVSEGAPLESLVELVTVFIRLVLSHDKLDEDQ-IEGLLA-AVSYLCKDIAR-EQCYKN 625 (1263)
Q Consensus 549 ~~~RCi~Lik~nP~Aa~~Fy~~a~~~~a~~~~l~~Li~~ll~~~ls~~k~~~e~-~eg~~~-a~a~L~~~L~~-~~~~k~ 625 (1263)
.-.|+-.-.|-..|.--|+....-.+.|-++++.+-+-+.+.++- ..-+.+ ++--.-|++++ -.+.++
T Consensus 697 ---------~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~n 767 (858)
T COG5215 697 ---------DLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKN 767 (858)
T ss_pred ---------ccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 123444556777777677888888888888888887755333221 223333 33223333332 456667
Q ss_pred HHHhHhhhhhHHHHHHhhc------------cccccchhhhhhcccCCCchh
Q 000832 626 ALKELFANDKVKSLFAAAS------------TGRARSSVFEIVSTVSPDNVV 665 (1263)
Q Consensus 626 ~l~~l~~g~~l~~ll~~a~------------t~~a~sa~~~I~s~~~~~~~~ 665 (1263)
.++.+| .-+-++|..-. |..|++-+-.|++.+|+-+++
T Consensus 768 r~~~v~--Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk 817 (858)
T COG5215 768 RVRSVL--PYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELK 817 (858)
T ss_pred hHHHhh--hHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchh
Confidence 777775 34444443322 223455556677778877666
No 121
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=60.47 E-value=2.5e+02 Score=31.99 Aligned_cols=184 Identities=16% Similarity=0.186 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHhhHhhcC--CCcchHHHHHHhhHHHHHHh--------------------------hcCCchHHHH-HH
Q 000832 314 SRAFAASIRRVLGGFVNQR--TTPGVEKMLFNLTEPVMFRS--------------------------LQAANSNVRQ-NA 364 (1263)
Q Consensus 314 s~~lAaklR~VLs~FHsqK--~~kgVdemL~rLY~PILwRL--------------------------Lka~NftVR~-SA 364 (1263)
++.-+...+.+|..|.+.. ....++..+...+.|++-+. ...+| .... -+
T Consensus 18 t~~s~~ia~~il~~~~~~~~~~~~~~~~~L~~~lrPlf~k~~~~~~t~~gr~~l~P~~~~~~~~~~~~~~~W-K~~~~~~ 96 (282)
T PF10521_consen 18 TEESAQIATSILEQFLSLSESPESIIERILIDTLRPLFSKSKNPRITSSGRKGLRPKLGFSFDDDELQRQPW-KSNPGLA 96 (282)
T ss_pred cHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHhHHhcCCCCcccccccccccCCCCcccccccccccCCc-ccCCccc
Confidence 3445566677777776432 23467788888888888877 11112 1111 11
Q ss_pred -HHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhH---H-----HHHHH
Q 000832 365 -LHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSAT---I-----TKIIT 435 (1263)
Q Consensus 365 -~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~---I-----~slL~ 435 (1263)
..++-.+-... .+....+.+.-....+..|+.|..|.+|..++. +|..+-+-+++.. + .+.+.
T Consensus 97 ~~~l~w~v~~~~----~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~----lL~~ll~~~~~~~~~~L~~tGl~~v~~ 168 (282)
T PF10521_consen 97 SHVLSWIVLSQL----DRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQ----LLHHLLEKVPAAEWDILRRTGLFSVFE 168 (282)
T ss_pred HHHHHHHHHhcC----CcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHH----HHHHHHHhCChhhhHHHHHcChHHHHH
Confidence 11111121111 122244455555667899999999999999998 5666666666544 1 11122
Q ss_pred -HHHHHhc-----cCCCchHHH--HHHHHHHHhhCC---CCc---hHHHHh-HHH-hhhhhcCCCc---hHHHHHHHHHH
Q 000832 436 -KIFDDNS-----HDLCNEVRL--ATVNGIIYLLGN---PLS---HEVLKV-LLP-RLGHLMQDNV---LSVRLAMADLL 496 (1263)
Q Consensus 436 -~If~~LA-----kDsQDSVRl--aVVeGLiaLLkn---~~S---he~Lk~-LLP-~LksLI~DkS---WRVRyAfADLL 496 (1263)
.+...|. .++.+++++ .++.++..+++. ..+ ...+.. +.. .+.++.+=.+ .++|...++.+
T Consensus 169 ~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l 248 (282)
T PF10521_consen 169 DALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQL 248 (282)
T ss_pred HHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHH
Confidence 2223333 233334443 457777777542 222 222222 223 2333444444 89999999998
Q ss_pred HHhhcccCCc
Q 000832 497 LLLRDIRTFQ 506 (1263)
Q Consensus 497 leLk~irgiK 506 (1263)
..+-+..|+.
T Consensus 249 ~~~i~~lGi~ 258 (282)
T PF10521_consen 249 PPIIDELGIS 258 (282)
T ss_pred HHHHHHhccH
Confidence 8888777764
No 122
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.12 E-value=60 Score=38.66 Aligned_cols=100 Identities=19% Similarity=0.158 Sum_probs=68.9
Q ss_pred hhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHH----HHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCc-hHHH
Q 000832 396 EKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATI----TKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLS-HEVL 470 (1263)
Q Consensus 396 ~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I----~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~S-he~L 470 (1263)
...+.+..+.||..|+. +++.....-|+-.. ...+.+++..+++|+.+.||..++-++..++.|... ...+
T Consensus 130 l~~l~~~~~~lR~~Aa~----Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~f 205 (342)
T KOG2160|consen 130 LGYLENSDAELRELAAR----VIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEF 205 (342)
T ss_pred HHHhcCCcHHHHHHHHH----HHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHH
Confidence 33789999999999997 67877777775321 124778999999999999999999999999987543 2211
Q ss_pred H--hHHHhhhhhcCC--CchHHHHHHHHHHHHh
Q 000832 471 K--VLLPRLGHLMQD--NVLSVRLAMADLLLLL 499 (1263)
Q Consensus 471 k--~LLP~LksLI~D--kSWRVRyAfADLLleL 499 (1263)
. +-+..|...+++ .+.|.+.=++-++..+
T Consensus 206 l~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~L 238 (342)
T KOG2160|consen 206 LKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLL 238 (342)
T ss_pred HhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 1 133456666666 4445444444444433
No 123
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=58.62 E-value=72 Score=36.24 Aligned_cols=105 Identities=21% Similarity=0.171 Sum_probs=67.0
Q ss_pred HhhhcCCCChHHHHHHHhhhhHHHHHHH-hhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCc-hHHHHh
Q 000832 395 LEKLLTDDCPDVRVVAVEGCCRILHLFW-ELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLS-HEVLKV 472 (1263)
Q Consensus 395 L~~LL~DDtPMVRRAAA~gVcriLskfW-EiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~S-he~Lk~ 472 (1263)
|..-+.|+.+.+|.-|..-+..+|..+- +.+..+.+.-++.-..++| |+...|.-+ +.|+.++++...- .+....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl--~D~~~~~~~-l~gl~~L~~~~~~~~~~~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL--DDHACVQPA-LKGLLALVKMKNFSPESAVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh--ccHhhHHHH-HHHHHHHHhCcCCChhhHHH
Confidence 4666899999999999985544444332 1222444444444444555 555667776 9999999865442 333444
Q ss_pred HHHhhhhhcC--CCchHHHHHHHHHHHHhhcc
Q 000832 473 LLPRLGHLMQ--DNVLSVRLAMADLLLLLRDI 502 (1263)
Q Consensus 473 LLP~LksLI~--DkSWRVRyAfADLLleLk~i 502 (1263)
++..+..-++ --...+|+.+-++|..+-+.
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~ 112 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN 112 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH
Confidence 5555544444 44678999999998887655
No 124
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=57.51 E-value=3.8e+02 Score=34.19 Aligned_cols=197 Identities=19% Similarity=0.253 Sum_probs=101.4
Q ss_pred HHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHH
Q 000832 392 FFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLK 471 (1263)
Q Consensus 392 F~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk 471 (1263)
|..+.....- ++.+.+-|++ ++++||.-+|.- ..+-|.. .-+|..|+...||..++.+|..+.+.. .+.+.
T Consensus 25 y~~il~~~kg-~~k~K~Laaq----~I~kffk~FP~l-~~~Ai~a-~~DLcEDed~~iR~~aik~lp~~ck~~--~~~v~ 95 (556)
T PF05918_consen 25 YKEILDGVKG-SPKEKRLAAQ----FIPKFFKHFPDL-QEEAINA-QLDLCEDEDVQIRKQAIKGLPQLCKDN--PEHVS 95 (556)
T ss_dssp HHHHHHGGGS--HHHHHHHHH----HHHHHHCC-GGG-HHHHHHH-HHHHHT-SSHHHHHHHHHHGGGG--T----T-HH
T ss_pred HHHHHHHccC-CHHHHHHHHH----HHHHHHhhChhh-HHHHHHH-HHHHHhcccHHHHHHHHHhHHHHHHhH--HHHHh
Confidence 5556777775 5888999998 689999999842 2222332 334677888889999999999998752 22333
Q ss_pred hHHHhhhhhcCCCch----HHHHHHHHHHHHhhcccCCceeeecChHHHHHHHh---cCchHHHHHHHHHhcccCCCCC-
Q 000832 472 VLLPRLGHLMQDNVL----SVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALA---NDQSQVAQKITRLLMPSYFPLK- 543 (1263)
Q Consensus 472 ~LLP~LksLI~DkSW----RVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa---~Ds~~V~k~IvkLLipSfFP~k- 543 (1263)
.+...|..+++-... -|+.++..+|.. .--..+.-|+..+. .....||.++.+.|-.-.+|..
T Consensus 96 kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~---------d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 96 KVADVLVQLLQTDDPVELDAVKNSLMSLLKQ---------DPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence 333333344442222 355555554322 11122333344443 3445799999988866655444
Q ss_pred --CChHHHhHHH-----HHHHhcChHHHHHH---HHHHhhc-----CCChHHHHHHHHHHHHhh-ccCC-C-CChhHHHH
Q 000832 544 --VNIKEACSRC-----VTIVKRSPVAGARF---CEFAVSE-----GAPLESLVELVTVFIRLV-LSHD-K-LDEDQIEG 605 (1263)
Q Consensus 544 --~s~~E~~~RC-----i~Lik~nP~Aa~~F---y~~a~~~-----~a~~~~l~~Li~~ll~~~-ls~~-k-~~~e~~eg 605 (1263)
..+.+.++++ -..++. -.|--| ..++-.. ..|.+...+|+.++..-+ +... . .|+|.++-
T Consensus 167 ~~~~p~~E~e~~i~~~ikkvL~D--VTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idr 244 (556)
T PF05918_consen 167 ELLTPQKEMEEFIVDEIKKVLQD--VTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDR 244 (556)
T ss_dssp TTS---HHHHHHHHHHHHHHCTT----HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHH
T ss_pred HHhhchHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHH
Confidence 1111333343 334432 223334 3333221 146777777877777655 3322 2 24566666
Q ss_pred HHH
Q 000832 606 LLA 608 (1263)
Q Consensus 606 ~~~ 608 (1263)
+..
T Consensus 245 li~ 247 (556)
T PF05918_consen 245 LIS 247 (556)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 125
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=52.29 E-value=15 Score=31.01 Aligned_cols=25 Identities=32% Similarity=0.283 Sum_probs=19.8
Q ss_pred hHHHhhhhhcCCCchHHHHHHHHHH
Q 000832 472 VLLPRLGHLMQDNVLSVRLAMADLL 496 (1263)
Q Consensus 472 ~LLP~LksLI~DkSWRVRyAfADLL 496 (1263)
.+...+..-+.|+|+.||-|+.+++
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 5667777788899999998888763
No 126
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=48.74 E-value=67 Score=40.98 Aligned_cols=172 Identities=15% Similarity=0.154 Sum_probs=100.7
Q ss_pred HHHHHHhhHhhcC----C--------------CcchH-HHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccc
Q 000832 320 SIRRVLGGFVNQR----T--------------TPGVE-KMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDAT 380 (1263)
Q Consensus 320 klR~VLs~FHsqK----~--------------~kgVd-emL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~ 380 (1263)
-.|++|.+|-... + +.+++ ..-+++|..++......++ ..+++...|.-+--+.
T Consensus 522 v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~------t~~~il~~f~tv~vsl- 594 (975)
T COG5181 522 VSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDT------TVGLILPCFSTVLVSL- 594 (975)
T ss_pred HHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccc------cccEEEecccceeeeh-
Confidence 3567777776543 1 22334 3446788888876665555 2345444444332110
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChh-HHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Q 000832 381 KEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSA-TITKIITKIFDDNSHDLCNEVRLATVNGIIY 459 (1263)
Q Consensus 381 rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~-~I~slL~~If~~LAkDsQDSVRlaVVeGLia 459 (1263)
.--.+.-+-....++.++|+..+|.||..|+. +|..|.+.-..--.. ....+=.-++..|-. +-+.|==.++.++..
T Consensus 595 ~~r~kp~l~~ivStiL~~L~~k~p~vR~~aad-l~~sl~~vlk~c~e~~~l~klg~iLyE~lge-~ypEvLgsil~Ai~~ 672 (975)
T COG5181 595 EFRGKPHLSMIVSTILKLLRSKPPDVRIRAAD-LMGSLAKVLKACGETKELAKLGNILYENLGE-DYPEVLGSILKAICS 672 (975)
T ss_pred hhccCcchHHHHHHHHHHhcCCCccHHHHHHH-HHHHHHHHHHhcchHHHHHHHhHHHHHhcCc-ccHHHHHHHHHHHHH
Confidence 00123445666777899999999999999997 444444333322222 222222223444433 334555555666655
Q ss_pred hhC---CCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhh
Q 000832 460 LLG---NPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLR 500 (1263)
Q Consensus 460 LLk---n~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk 500 (1263)
|-. ...-++-...+||+|...+..+-.+|-.+-++++..|+
T Consensus 673 I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~ 716 (975)
T COG5181 673 IYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTIC 716 (975)
T ss_pred HhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHH
Confidence 543 33335566778999998899999999888888766655
No 127
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=48.65 E-value=23 Score=38.43 Aligned_cols=52 Identities=27% Similarity=0.257 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHhhCCCCc---hHHHHhHHHhh------------hhhcCCCchHHHHHHHHHHHHh
Q 000832 448 EVRLATVNGIIYLLGNPLS---HEVLKVLLPRL------------GHLMQDNVLSVRLAMADLLLLL 499 (1263)
Q Consensus 448 SVRlaVVeGLiaLLkn~~S---he~Lk~LLP~L------------ksLI~DkSWRVRyAfADLLleL 499 (1263)
.||..++.++.++.+...+ +.....+||.- .-++.|++.|||.+++..+..+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~l 67 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAAL 67 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHH
Confidence 4899999999999987433 44445577754 3367899999999999985544
No 128
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=47.60 E-value=1.1e+02 Score=31.13 Aligned_cols=71 Identities=20% Similarity=0.166 Sum_probs=50.6
Q ss_pred HHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHH---HHHHhcC----chHHHHHHHHHhcc--cCCCCC
Q 000832 473 LLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDIL---LSALAND----QSQVAQKITRLLMP--SYFPLK 543 (1263)
Q Consensus 473 LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~L---LaRLa~D----s~~V~k~IvkLLip--SfFP~k 543 (1263)
.+..|++-+..++..|.+.+..+|..+.+.-|..|..-|.-.+. +.++... ++.|++++.+++.. ..||..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44455555667899999999999999999999988766555332 3333333 35788888888876 366654
No 129
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.46 E-value=80 Score=42.37 Aligned_cols=60 Identities=27% Similarity=0.158 Sum_probs=36.4
Q ss_pred chHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHH
Q 000832 357 NSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHL 420 (1263)
Q Consensus 357 NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLsk 420 (1263)
-+-.|.=.|-.+...+.-.+...-.-.. .+.++-|..++.|+.|+||.||+-.+...|+.
T Consensus 613 ~pLLrQW~~icLG~LW~d~~~Arw~G~r----~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 613 EPLLRQWLCICLGRLWEDYDEARWSGRR----DNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred cHHHHHHHHHHHHHHhhhcchhhhcccc----ccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 3455666666666655554431100001 12245557899999999999999976666664
No 130
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=45.97 E-value=75 Score=40.81 Aligned_cols=107 Identities=15% Similarity=0.112 Sum_probs=81.4
Q ss_pred HHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHH
Q 000832 392 FFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLK 471 (1263)
Q Consensus 392 F~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk 471 (1263)
...+.+|..-..-.||----+ .+.+|.+.++++++.+.|.+-+..--.|..+.+|..+|.++..|+..+.....--
T Consensus 332 ~p~l~kLF~~~Dr~iR~~LL~----~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~ 407 (690)
T KOG1243|consen 332 IPVLLKLFKSPDRQIRLLLLQ----YIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNG 407 (690)
T ss_pred hhhHHHHhcCcchHHHHHHHH----hHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcH
Confidence 345677777777778876666 4789999999999999999999888899999999999999999988776553333
Q ss_pred hHHHhhhhhcCCCchHHHHHHHHHHHHhhcc
Q 000832 472 VLLPRLGHLMQDNVLSVRLAMADLLLLLRDI 502 (1263)
Q Consensus 472 ~LLP~LksLI~DkSWRVRyAfADLLleLk~i 502 (1263)
.++-.+..+-.|.---.|..-..++.++..+
T Consensus 408 Ellr~~ar~q~d~~~~irtntticlgki~~~ 438 (690)
T KOG1243|consen 408 ELLRYLARLQPDEHGGIRTNTTICLGKIAPH 438 (690)
T ss_pred HHHHHHHhhCccccCcccccceeeecccccc
Confidence 3665666555577777777777766666543
No 131
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=44.08 E-value=5.1e+02 Score=33.06 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=73.1
Q ss_pred hHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhh----
Q 000832 404 PDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGH---- 479 (1263)
Q Consensus 404 PMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~Lks---- 479 (1263)
|.+.... ..+-.+++.+-..+.++.+.+.+..+-.-+-....|+||+++.+=+..+.+.....+....++|.+..
T Consensus 452 ~~l~~~~-~~lL~l~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~ 530 (559)
T PF14868_consen 452 PYLQQTL-SLLLSLLSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHM 530 (559)
T ss_pred hHHHHHH-HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHH
Confidence 4444422 23445666677777778888777776555556667889999999888888877777777778887755
Q ss_pred hcCCCchHHHHHHHHHHHHhhccc
Q 000832 480 LMQDNVLSVRLAMADLLLLLRDIR 503 (1263)
Q Consensus 480 LI~DkSWRVRyAfADLLleLk~ir 503 (1263)
++.|++|=|+--+.+-|...++.-
T Consensus 531 LL~d~~Wll~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 531 LLADRHWLLHQHALEAFGQFAERT 554 (559)
T ss_pred HhcCCcHHHHHHHHHHHHHHhccC
Confidence 688999999999999888777543
No 132
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=43.74 E-value=4e+02 Score=37.62 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=95.6
Q ss_pred HHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHH
Q 000832 342 FNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLF 421 (1263)
Q Consensus 342 ~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskf 421 (1263)
+.-|.-+|-+.+..+-..+|+-|---+..+-.. ||... .+.+++.+. ..=+.|....||-||+. .+|.|
T Consensus 814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~-Dp~vL---~~~dvq~~V---h~R~~DssasVREAald----LvGrf 882 (1692)
T KOG1020|consen 814 FDPYLKLILSVLGENAIALRTKALKCLSMIVEA-DPSVL---SRPDVQEAV---HGRLNDSSASVREAALD----LVGRF 882 (1692)
T ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhc-ChHhh---cCHHHHHHH---HHhhccchhHHHHHHHH----HHhhh
Confidence 334555566777777788999887776654332 44321 234555555 66678999999999998 56777
Q ss_pred HhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHh
Q 000832 422 WELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLL 499 (1263)
Q Consensus 422 WEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleL 499 (1263)
.-..| +.+.+.-..|... ..|...+||==|++-+..|-...+.-...-.+.-.+..=++|+-.-|--.+..-|.++
T Consensus 883 vl~~~-e~~~qyY~~i~er-IlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 883 VLSIP-ELIFQYYDQIIER-ILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred hhccH-HHHHHHHHHHHhh-cCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 65554 4555555555555 4788999999999999998865443333333444444457788776777766666553
No 133
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=43.57 E-value=28 Score=29.39 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHh
Q 000832 387 LFDKQFFLLEKLLTDDCPDVRVVAVE 412 (1263)
Q Consensus 387 EL~kQF~~L~~LL~DDtPMVRRAAA~ 412 (1263)
.+++.+ .+-+.|+.|.||.||++
T Consensus 18 ~v~~~i---~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 18 DVQSAI---IRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHH---HHHhcCCChHHHHHHHH
Confidence 455555 88899999999999986
No 134
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=43.56 E-value=2e+02 Score=39.70 Aligned_cols=194 Identities=21% Similarity=0.227 Sum_probs=119.5
Q ss_pred HHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHh
Q 000832 362 QNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDN 441 (1263)
Q Consensus 362 ~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~L 441 (1263)
.+.-.+|-.+||..++.. .. +-..+..+...+.-.++.||-+|++. ++.+......++....+..+. -+
T Consensus 794 ~~s~~vf~s~~~~m~s~l-----~~-~~~~l~~l~~~~~s~~~a~r~~~ar~----i~~~~k~~~~e~m~~v~~~~~-~l 862 (1549)
T KOG0392|consen 794 LSSFEVFNSLAPLMHSFL-----HP-LGSLLPRLFFFVRSIHIAVRYAAARC----IGTMFKSATRETMATVINGFL-PL 862 (1549)
T ss_pred hhhHHHHHHHHHhhhhhh-----hh-hhhhhhHHHHhcccchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh-hh
Confidence 344566777788876643 12 44455667788999999999999985 566666666555544444332 24
Q ss_pred ccCCCchHHHHHHHHHHHhhCCCC---chHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCc--eeeecCh-HH
Q 000832 442 SHDLCNEVRLATVNGIIYLLGNPL---SHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQ--FNKVVGL-DI 515 (1263)
Q Consensus 442 AkDsQDSVRlaVVeGLiaLLkn~~---She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgiK--F~~VV~~-D~ 515 (1263)
..|....||-+.-..++.++.... -++...-+.|.+...+.|...-||.|+-..|..+......- ..+..++ .+
T Consensus 863 l~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~e 942 (1549)
T KOG0392|consen 863 LGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKE 942 (1549)
T ss_pred ccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHH
Confidence 456666677666555555443222 24444557788888999999999999999998887655422 1111121 34
Q ss_pred HHHHHhcCchHHHHHHHHHhcccCCC---CCCChHHHhHHHHHHHhcChHHHHHHHHHHhh---cCCC
Q 000832 516 LLSALANDQSQVAQKITRLLMPSYFP---LKVNIKEACSRCVTIVKRSPVAGARFCEFAVS---EGAP 577 (1263)
Q Consensus 516 LLaRLa~Ds~~V~k~IvkLLipSfFP---~k~s~~E~~~RCi~Lik~nP~Aa~~Fy~~a~~---~~a~ 577 (1263)
|++.-+.| |+-|=.||-||=.| ...++. ..++++-+=|-..-.|++. ||+-
T Consensus 943 Ll~~ke~e----rkFLeqlldpski~~y~Ip~pI~-------a~LRkYQqEGVnWLaFLnky~LHGIL 999 (1549)
T KOG0392|consen 943 LLASKEEE----RKFLEQLLDPSKIPEYKIPVPIS-------AKLRKYQQEGVNWLAFLNKYKLHGIL 999 (1549)
T ss_pred HHHhHHHH----HHHHHHhcCcccCCccccccchh-------HHHHHHHHhccHHHHHHHHhccccee
Confidence 45444444 46666777787555 223433 5566666666555555554 5643
No 135
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=43.08 E-value=1.5e+02 Score=40.82 Aligned_cols=151 Identities=17% Similarity=0.123 Sum_probs=86.4
Q ss_pred HHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCC
Q 000832 347 PVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIP 426 (1263)
Q Consensus 347 PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP 426 (1263)
-++-.+...++|.+|.....-.-..+... . +.+...+..-++....-+.|..-.||+.|++.+-.+.+.| -.++
T Consensus 170 ~il~q~~~q~~w~ir~Ggll~iky~~air-~----d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~-v~l~ 243 (1549)
T KOG0392|consen 170 DILLQMLRQPNWEIRHGGLLGIKYNVAIR-Q----DLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQ-VKLM 243 (1549)
T ss_pred HHHHHHHcCcchhheechHHHHHHHHHHH-H----HHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHH-Hhhh
Confidence 34444555567788776544443333321 1 1123445555666777899999999999999877777777 4455
Q ss_pred hhHHHHHHHHHHHHhcc-CC-C---chHHHHHHHHHHHh-----hCCCCch-HHHHhHHHhhhhhcCCCchHHHHHHHHH
Q 000832 427 SATITKIITKIFDDNSH-DL-C---NEVRLATVNGIIYL-----LGNPLSH-EVLKVLLPRLGHLMQDNVLSVRLAMADL 495 (1263)
Q Consensus 427 ~~~I~slL~~If~~LAk-Ds-Q---DSVRlaVVeGLiaL-----Lkn~~Sh-e~Lk~LLP~LksLI~DkSWRVRyAfADL 495 (1263)
...+..++..++..+.. |+ . .+.|-..-+-+++. ..+.+.+ .....++|.+++.+ +.-|+++..+...
T Consensus 244 ~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i-~sv~~a~l~~l~~ 322 (1549)
T KOG0392|consen 244 VQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTI-SSVRRAALETLAM 322 (1549)
T ss_pred HhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHH-HHHHHHHHHHHHH
Confidence 66677777777666554 32 2 34555443333322 1111112 12223455555544 4667777777777
Q ss_pred HHHhhcccC
Q 000832 496 LLLLRDIRT 504 (1263)
Q Consensus 496 LleLk~irg 504 (1263)
|.+..+.-.
T Consensus 323 lle~~~qs~ 331 (1549)
T KOG0392|consen 323 LLEADDQSD 331 (1549)
T ss_pred HHhcCCCCC
Confidence 777774433
No 136
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.65 E-value=1.1e+03 Score=32.37 Aligned_cols=187 Identities=20% Similarity=0.197 Sum_probs=117.5
Q ss_pred CCCCChhHHHHHHHHHHHHHhhhhhhHhHHHHHHhHhhhhhHHHHHHhhccccccchhhhhhcccCCCchh--HHHHHHH
Q 000832 595 HDKLDEDQIEGLLAAVSYLCKDIAREQCYKNALKELFANDKVKSLFAAASTGRARSSVFEIVSTVSPDNVV--GLLEQCM 672 (1263)
Q Consensus 595 ~~k~~~e~~eg~~~a~a~L~~~L~~~~~~k~~l~~l~~g~~l~~ll~~a~t~~a~sa~~~I~s~~~~~~~~--~~~~~c~ 672 (1263)
+..-+.-|.||=+.+.+.|+.-|-....||+-+..++..-..|.+-..+.-=|||+. -+++.++..+.+ +...+-+
T Consensus 427 ~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac--~vl~~~~~~df~d~~~l~~al 504 (1010)
T KOG1991|consen 427 PPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARAC--WVLSQFSSIDFKDPNNLSEAL 504 (1010)
T ss_pred CCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHH--HHHHHHHhccCCChHHHHHHH
Confidence 444567889999999999997788788899999998887777777777766667765 334555533333 3344444
Q ss_pred hhhhhcCC----CChhhhhHHHHHHHhHHhhccCChhHH---------------------HHHHHHHHHHHHhhhhh---
Q 000832 673 GLISKCKG----LSEDEERQAEVRSAHKLLLSSCAFDDM---------------------LEALTMLLQKAVYRCHV--- 724 (1263)
Q Consensus 673 ~~~~~~~g----~~~~~~~q~~~~sa~~~~~s~~~~d~~---------------------~~~l~~~l~~~~~~~~~--- 724 (1263)
..++||=- +|-.++ +.. |++.+++..-+-++ .|.|++.||+.++.|.+
T Consensus 505 e~t~~~l~~d~~lPV~Ve---Aal-ALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseEls 580 (1010)
T KOG1991|consen 505 ELTHNCLLNDNELPVRVE---AAL-ALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELS 580 (1010)
T ss_pred HHHHHHhccCCcCchhhH---HHH-HHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhc
Confidence 45555433 333222 211 33444444443333 46789999999988876
Q ss_pred ccccCCCCCcCccccccCCCcccccccccccc--CCCCCCCchhhhhhHhhhhhhHHHhhcchhhhhhhhccchHHHHH
Q 000832 725 KFGTEIPKHNVSSVKRKKPKSAVKISGKWKYA--SGKKASSFEEDYSIAVGIAWQVKDLLTSEDSRKAMLGSQHLELLF 801 (1263)
Q Consensus 725 ~~g~~~~~~~~~~~krkk~ks~~k~~~~~~~~--~~~~~~~~~~~~~~~~g~awqv~~~l~~~~~r~a~l~s~~~e~~~ 801 (1263)
.|++|+-.+-+. +- |++. ++....+-++-=-+|+|+-=-|--+|.+=+.+.-++++-+--.+.
T Consensus 581 PfA~eL~q~La~------------~F--~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~ 645 (1010)
T KOG1991|consen 581 PFAVELCQNLAE------------TF--LKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLP 645 (1010)
T ss_pred hhHHHHHHHHHH------------HH--HHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 356665443322 11 2222 222223345555678999999999999999999998854433333
No 137
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=42.45 E-value=2.5e+02 Score=29.60 Aligned_cols=79 Identities=13% Similarity=0.050 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHH-HhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCC
Q 000832 386 TLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLF-WELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNP 464 (1263)
Q Consensus 386 ~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskf-WEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~ 464 (1263)
.++.+...-+.+|+++..|.-|-+|+.=+......- ||.+-. .-...+..++..|-+++...++.+++..+..|....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~-~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLS-HGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 556677777799999999999998886444344433 888732 224446666666766777789999999998887644
Q ss_pred C
Q 000832 465 L 465 (1263)
Q Consensus 465 ~ 465 (1263)
.
T Consensus 100 ~ 100 (165)
T PF08167_consen 100 R 100 (165)
T ss_pred c
Confidence 3
No 138
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=42.02 E-value=9.2e+02 Score=31.51 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCCh--hH-HHHHHHHHHHHhccCCCchHHHHHHHHHHHhhC
Q 000832 386 TLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPS--AT-ITKIITKIFDDNSHDLCNEVRLATVNGIIYLLG 462 (1263)
Q Consensus 386 ~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~--~~-I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLk 462 (1263)
...+..|..+.+-+.-..--||.-.. ++|+...+.+-+ +. .-.++.++-..+ .|.-..||..+|.+|+.+=+
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~l----qila~~~d~v~eIDe~l~N~L~ekl~~R~-~DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSL----QILALLSDVVREIDEVLANGLLEKLSERL-FDREKAVRREAVKVLCYYQE 161 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHH----HHHHHHHHhcchHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHh
Confidence 45666676777777778888997554 488888777754 32 333333444443 68888999999999998865
Q ss_pred CCCchHH-HHhHHHhhhhhcCCCchHHHHHHHHHH
Q 000832 463 NPLSHEV-LKVLLPRLGHLMQDNVLSVRLAMADLL 496 (1263)
Q Consensus 463 n~~She~-Lk~LLP~LksLI~DkSWRVRyAfADLL 496 (1263)
-....+. ...+|-.+ +=+|+|-.||-++.-.+
T Consensus 162 ~~~neen~~~n~l~~~--vqnDPS~EVRr~allni 194 (885)
T COG5218 162 MELNEENRIVNLLKDI--VQNDPSDEVRRLALLNI 194 (885)
T ss_pred ccCChHHHHHHHHHHH--HhcCcHHHHHHHHHHHe
Confidence 4333322 22222221 23599999999876653
No 139
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.18 E-value=1.6e+02 Score=35.10 Aligned_cols=21 Identities=43% Similarity=0.393 Sum_probs=18.5
Q ss_pred HHhhhcCCCChHHHHHHHhhh
Q 000832 394 LLEKLLTDDCPDVRVVAVEGC 414 (1263)
Q Consensus 394 ~L~~LL~DDtPMVRRAAA~gV 414 (1263)
.+..|+.|..|.||.+|+.++
T Consensus 7 elv~ll~~~sP~v~~~AV~~l 27 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHL 27 (353)
T ss_pred HHHHHhccCChHHHHHHHHHH
Confidence 457899999999999999875
No 140
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=41.08 E-value=2.5e+02 Score=37.94 Aligned_cols=149 Identities=23% Similarity=0.201 Sum_probs=96.1
Q ss_pred HHHHHhhhcCCCChHHHHHHHhhhhHHHHHHH-----------------------hhCC---------------------
Q 000832 391 QFFLLEKLLTDDCPDVRVVAVEGCCRILHLFW-----------------------ELIP--------------------- 426 (1263)
Q Consensus 391 QF~~L~~LL~DDtPMVRRAAA~gVcriLskfW-----------------------EiIP--------------------- 426 (1263)
.|.++..-|-|..|.||++|...+.++|.... +..+
T Consensus 473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~ 552 (1529)
T KOG0413|consen 473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHREAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLL 552 (1529)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccchHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcC
Confidence 46667888999999999999988877665310 0000
Q ss_pred --hhH---------------HHH-HHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHH
Q 000832 427 --SAT---------------ITK-IITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSV 488 (1263)
Q Consensus 427 --~~~---------------I~s-lL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRV 488 (1263)
+++ ... .+.-|...+..|+-+.||.++...+..++.--.....++..|-.|+.+.+|+---|
T Consensus 553 ~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsv 632 (1529)
T KOG0413|consen 553 DEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSV 632 (1529)
T ss_pred cchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHH
Confidence 111 122 23345677777999999999999888887654445555667888999999999999
Q ss_pred HHHHHHHHHHhhcccCCceeeecChHHHHHHHhcCch-HHHHH----HHHHhcccC
Q 000832 489 RLAMADLLLLLRDIRTFQFNKVVGLDILLSALANDQS-QVAQK----ITRLLMPSY 539 (1263)
Q Consensus 489 RyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~Ds~-~V~k~----IvkLLipSf 539 (1263)
|.-.++-|.++.-..-.=|.=--.--+-+-.+.+|+. .|.++ |-++|.|-|
T Consensus 633 rk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~ 688 (1529)
T KOG0413|consen 633 RKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLL 688 (1529)
T ss_pred HHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhc
Confidence 9999999998764433323000011122445556653 34333 555666633
No 141
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=41.07 E-value=2.1e+02 Score=30.25 Aligned_cols=130 Identities=18% Similarity=0.064 Sum_probs=68.8
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCC-CChHHHHHHHhhhhHHHHHHHhh
Q 000832 346 EPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTD-DCPDVRVVAVEGCCRILHLFWEL 424 (1263)
Q Consensus 346 ~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~D-DtPMVRRAAA~gVcriLskfWEi 424 (1263)
.-++.++.+.+++..|.-|+.++....+..++. . +..+...+.+ |.-.+--..+.. +++.+..-
T Consensus 53 ~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~---------~---~~~~~~~~~~~~~W~~~D~~~~~---~~~~~~~~ 117 (213)
T PF08713_consen 53 YELADELWESGYREERYLALLILDKRRKKLTEE---------D---LELLEKWLPDIDNWATCDSLCSK---LLGPLLKK 117 (213)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH---------H---HHHHHHCCCCCCCHHHHHHHTHH---HHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH---------H---HHHHHHHhccCCcchhhhHHHHH---HHHHHHHh
Confidence 346667888889999999988887655443221 1 1111333221 222222222111 12222111
Q ss_pred CChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhh
Q 000832 425 IPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLR 500 (1263)
Q Consensus 425 IP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk 500 (1263)
- ..+.+++...+.++..=+|-+++-++...... .....++..+...++|+...||.|++=.|.++.
T Consensus 118 ~------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~ 183 (213)
T PF08713_consen 118 H------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIG 183 (213)
T ss_dssp H------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHC
T ss_pred h------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 1 22445566666666655555554444333332 455567777777788888888888888766665
No 142
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=40.52 E-value=5.8e+02 Score=28.70 Aligned_cols=181 Identities=13% Similarity=0.144 Sum_probs=94.2
Q ss_pred ccccCccchhHHHHHhcC-CHHHHHHHHHHHHhhhccCcHHHHHHHhHHHHhhhcc-cchhhHHHHHHhHHHHHHHHhhc
Q 000832 234 LYLKTEDGRKFLAFLFGL-SKPMLKDVLAMIKSQISFERKSMLEAYGDVLYRAWKG-VEEGFREDVESGFLQVLIEGAIH 311 (1263)
Q Consensus 234 ~FlkseEGrrFLAflFgl-~~~Lik~ih~tIKnQLp~~~kS~le~YGEIyFrAWK~-A~gd~~eeIE~~cIQdLm~~AIh 311 (1263)
.+-.+..|-|++=.++.. ++.....+...++.. ...-....||+-....=-+ ++.+.+..|=..+..++.+-|.|
T Consensus 14 ~l~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~---~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~ 90 (322)
T cd07920 14 EFAKDQHGSRFLQQKLEEATPEEKELIFDEILPH---VVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLD 90 (322)
T ss_pred hccCCchhhHHHHHHhccCCHHHHHHHHHHHHHh---HHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHccc
Confidence 345567888988888743 666667776666643 3466677788755544333 34455555544555677777765
Q ss_pred cCCHHHHHHHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHH
Q 000832 312 ASSRAFAASIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQ 391 (1263)
Q Consensus 312 a~s~~lAaklR~VLs~FHsqK~~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQ 391 (1263)
... ..-+++++.... ....+. +.+...|-+..+....+ ++.++..++...+++. .+..+...
T Consensus 91 ~~g---~~vlqkll~~~~----~~~~~~-i~~~l~~~~~~L~~d~~------gn~Vvq~~l~~~~~~~----~~~i~~~l 152 (322)
T cd07920 91 MYG---CRVIQKLLESIS----EEQISL-LVKELRGHVVELVKDQN------GNHVIQKCIEKFPPED----LQFIIDAF 152 (322)
T ss_pred chh---HHHHHHHHHhcC----HHHHHH-HHHHHHHCHHHHhhccc------ccHHHHHHHHhCCHHH----HHHHHHHH
Confidence 542 234455554432 222233 33333455555555432 3344444555544432 22333333
Q ss_pred HHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHH---HHhccCC
Q 000832 392 FFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIF---DDNSHDL 445 (1263)
Q Consensus 392 F~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If---~~LAkDs 445 (1263)
.+-+.+++.|. .-|+++.++.+..+++....++..+. ..|+.|.
T Consensus 153 ~~~~~~l~~~~----------~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~ 199 (322)
T cd07920 153 KGNCVALSTHP----------YGCRVIQRCLEHCSEEQREPLLEEILEHALELVQDQ 199 (322)
T ss_pred HHHHHHHHcCc----------cccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 33345555443 23455666666666655555544443 3455553
No 143
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=39.85 E-value=7.2e+02 Score=29.59 Aligned_cols=239 Identities=15% Similarity=0.199 Sum_probs=137.4
Q ss_pred hhhcccccccCCCCCCHHHHHHHHHHHh----hccccccCccchhHHHHHhcCCH-----HHHHHHHHHHHhhhccCcHH
Q 000832 203 YSFRDAFALFDFDDNSIEDLKLLLIRCV----ISPLYLKTEDGRKFLAFLFGLSK-----PMLKDVLAMIKSQISFERKS 273 (1263)
Q Consensus 203 ~~lReal~llDf~deS~~slk~LLLrc~----~sP~FlkseEGrrFLAflFgl~~-----~Lik~ih~tIKnQLp~~~kS 273 (1263)
|-+.+++..+-- .....++-...+.|+ ++|.++.+..-.++++.+..+.. +++-+-..++|+-+...|..
T Consensus 90 ~~i~~~i~~l~~-~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~ 168 (372)
T PF12231_consen 90 FIIDHSIESLQN-PNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQ 168 (372)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 556666554422 244567777778887 55777777777788888875553 55667777888877777777
Q ss_pred HHHHHh---HHHHhhhcccchhhHHHHHHhHHHHHHHHhhccC-CHHHHHHHHHHHhhHhhcCCCcchHHHHHHhhHHHH
Q 000832 274 MLEAYG---DVLYRAWKGVEEGFREDVESGFLQVLIEGAIHAS-SRAFAASIRRVLGGFVNQRTTPGVEKMLFNLTEPVM 349 (1263)
Q Consensus 274 ~le~YG---EIyFrAWK~A~gd~~eeIE~~cIQdLm~~AIha~-s~~lAaklR~VLs~FHsqK~~kgVdemL~rLY~PIL 349 (1263)
+.++.. +.+|..=-.+..+.+... +.-..+.+.+.+ .+.++..++.+++. .. .++.+.++|.+-+
T Consensus 169 M~~~~~~W~~~l~~~l~~~~k~ir~~a----~~l~~~~~~~l~~~~~~s~~~~~~~~~-----~~--~~~~~~~~~~~~L 237 (372)
T PF12231_consen 169 MIKHADIWFPILFPDLLSSAKDIRTKA----ISLLLEAKKCLGPNKELSKSVLEDLQR-----SL--ENGKLIQLYCERL 237 (372)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHH----HHHHHHHHHHhChhHHHHHHHHHHhcc-----cc--ccccHHHHHHHHH
Confidence 777644 444444444445555543 333334444443 55667766666632 11 1125667777777
Q ss_pred HHhhcC-CchHH--HHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHH---h
Q 000832 350 FRSLQA-ANSNV--RQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFW---E 423 (1263)
Q Consensus 350 wRLLka-~NftV--R~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfW---E 423 (1263)
.++..+ +++.. +.=+.-++..--+..+. -+.+++-....+.-..+..|.||.+|-..=.++.. .- +
T Consensus 238 ~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~-------w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy-~~~~~~ 309 (372)
T PF12231_consen 238 KEMIKSKDEYKLAMQIWSVVILLLGSSRLDS-------WEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY-ASNPNE 309 (372)
T ss_pred HHHHhCcCCcchHHHHHHHHHHHhCCchhhc-------cHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HhcCCc
Confidence 777777 44322 22111111111111111 23344444444666788999999999886322222 10 1
Q ss_pred hCChhHHHHHHHHHHHHhccCCCc----hHHHHHHHHHHHhh
Q 000832 424 LIPSATITKIITKIFDDNSHDLCN----EVRLATVNGIIYLL 461 (1263)
Q Consensus 424 iIP~~~I~slL~~If~~LAkDsQD----SVRlaVVeGLiaLL 461 (1263)
...+..+.-++.|+...+-+...+ .||-+++.++..++
T Consensus 310 ~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 310 LTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred cccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 111334445566887777666665 78888888877665
No 144
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=39.79 E-value=4.4e+02 Score=34.17 Aligned_cols=169 Identities=15% Similarity=0.194 Sum_probs=94.6
Q ss_pred HHHHHHHHhcccCCCCCCChHHHhHHHHHHHhcChHHHHHHHHHHhhcCCChHHHHHH---------HHHHHHhhccCCC
Q 000832 527 VAQKITRLLMPSYFPLKVNIKEACSRCVTIVKRSPVAGARFCEFAVSEGAPLESLVEL---------VTVFIRLVLSHDK 597 (1263)
Q Consensus 527 V~k~IvkLLipSfFP~k~s~~E~~~RCi~Lik~nP~Aa~~Fy~~a~~~~a~~~~l~~L---------i~~ll~~~ls~~k 597 (1263)
..+++..++-.---+......+..+..-.|+..++.+..+.|+.....|+|++-...| |+.+++...
T Consensus 189 l~~e~~~~~~~~~~~~~~~~~~d~~~l~vll~qCr~~v~~v~~~~~~~G~Sv~l~~~L~Rl~Q~L~Ri~~Ll~~l~---- 264 (643)
T PF10136_consen 189 LQREVEAFLEAYRQQDEDPDSEDLKHLRVLLDQCREQVDRVRKHLEKYGVSVSLVFLLERLRQQLDRIELLLDLLV---- 264 (643)
T ss_pred HHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHhccccCeeHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 4455554444332233222223567778899999999999999998889988533333 344444444
Q ss_pred CChhHHHHHHHHHHHHHhhhhhhHhHHHHHHhHhhhhhHHHHHHhhccccccchhhhhhcccCCCchhHHHHHHHhhhhh
Q 000832 598 LDEDQIEGLLAAVSYLCKDIAREQCYKNALKELFANDKVKSLFAAASTGRARSSVFEIVSTVSPDNVVGLLEQCMGLISK 677 (1263)
Q Consensus 598 ~~~e~~eg~~~a~a~L~~~L~~~~~~k~~l~~l~~g~~l~~ll~~a~t~~a~sa~~~I~s~~~~~~~~~~~~~c~~~~~~ 677 (1263)
+..+.-..+...|-+.|+...+-++.+++++ +.=-++++.-.|.++--+== -+|. .+-+ |=...+-.
T Consensus 265 ---~~~~~~~~~~~~L~~~Lv~~~~~r~sir~L~--~~n~~lLAr~vtE~~s~tGE---HYIt-r~r~----EY~~M~~s 331 (643)
T PF10136_consen 265 ---DDSPDRRRAIVRLFKELVRAECRRNSIRALW--RSNTSLLARKVTENASETGE---HYIT-RDRK----EYFAMLRS 331 (643)
T ss_pred ---ccCchhhHHHHHHHHHHHHHHHHhccHHHHH--HHHHHHHHHHHHHhcCCCCC---Cccc-CCHH----HHHHHHHH
Confidence 1122233456678888999999999999996 33344555444443211100 0111 1111 11122222
Q ss_pred cCCCChhhhhHHHHHHHhHHhhccCChhHHHHHHHHHHH
Q 000832 678 CKGLSEDEERQAEVRSAHKLLLSSCAFDDMLEALTMLLQ 716 (1263)
Q Consensus 678 ~~g~~~~~~~q~~~~sa~~~~~s~~~~d~~~~~l~~~l~ 716 (1263)
++|=-=- -++-...|+.+..-+...+.+++-..|.
T Consensus 332 AaGGG~i----ia~ma~lKi~l~~l~l~~f~~~~~~slN 366 (643)
T PF10136_consen 332 AAGGGLI----IAFMALLKILLGGLGLSPFWEGFLASLN 366 (643)
T ss_pred HhcCCHH----HHHHHHHHHHHhhcCcchHHHHHHHHHH
Confidence 2221111 3455667888887788888888776663
No 145
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=39.61 E-value=1.2e+02 Score=29.68 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=45.4
Q ss_pred HHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhc---------C-chHHHHHHHHHh
Q 000832 473 LLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALAN---------D-QSQVAQKITRLL 535 (1263)
Q Consensus 473 LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~---------D-s~~V~k~IvkLL 535 (1263)
+...|..-+.+++|+|-+-+..+|..+.+.-|..|..-+.-...+-++.. + +..|++++-+|+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~ 110 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELV 110 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHH
Confidence 44444455667899999999999999999999999887766666555522 1 246777776654
No 146
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=38.60 E-value=3.6e+02 Score=33.29 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=55.8
Q ss_pred hhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHhhCCCCchHHHHhHH
Q 000832 396 EKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDL-CNEVRLATVNGIIYLLGNPLSHEVLKVLL 474 (1263)
Q Consensus 396 ~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDs-QDSVRlaVVeGLiaLLkn~~She~Lk~LL 474 (1263)
.+...+.....+..+.+++ + .+-...+...+.+++. .... ...||++++.+|..+.+. ..+.+...++
T Consensus 452 ~~~~~~~~~~~~~~~LkaL----G----N~g~~~~i~~l~~~l~--~~~~~~~~iR~~Av~Alr~~a~~-~p~~v~~~l~ 520 (574)
T smart00638 452 QQAVSKGDEEEIQLYLKAL----G----NAGHPSSIKVLEPYLE--GAEPLSTFIRLAAILALRNLAKR-DPRKVQEVLL 520 (574)
T ss_pred HHHHhcCCchheeeHHHhh----h----ccCChhHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHh-CchHHHHHHH
Confidence 4444444555555555543 3 2223344444555554 2333 357999999999987752 2355666677
Q ss_pred HhhhhhcCCCchHHHHHHHHHHHHhh
Q 000832 475 PRLGHLMQDNVLSVRLAMADLLLLLR 500 (1263)
Q Consensus 475 P~LksLI~DkSWRVRyAfADLLleLk 500 (1263)
|.+.+ .+....||.+++..|.+-.
T Consensus 521 ~i~~n--~~e~~EvRiaA~~~lm~t~ 544 (574)
T smart00638 521 PIYLN--RAEPPEVRMAAVLVLMETK 544 (574)
T ss_pred HHHcC--CCCChHHHHHHHHHHHhcC
Confidence 77643 3455669999999987765
No 147
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=38.59 E-value=1.9e+02 Score=39.34 Aligned_cols=205 Identities=17% Similarity=0.160 Sum_probs=120.1
Q ss_pred hHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCC-CChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCC
Q 000832 368 LLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTD-DCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLC 446 (1263)
Q Consensus 368 F~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~D-DtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQ 446 (1263)
+...||-..+-... +.++...|.++..++.- -.|.|-.-|.+- -.++..+-+.+..-.-...|+.+++-| -++
T Consensus 1752 li~~nPdlasvfgS---e~~lig~F~l~~~~lr~~~~~~iq~LaL~V-i~~~Tan~~Cv~~~a~~~vL~~LL~lL--HS~ 1825 (2235)
T KOG1789|consen 1752 LVSANPDLASVFGS---EILLIGNFPLLITYLRCRKHPKLQILALQV-ILLATANKECVTDLATCNVLTTLLTLL--HSQ 1825 (2235)
T ss_pred HHhhCcchhhhccc---hhhhhcccHHHHHHHHHcCCchHHHHHHHH-HHHHhcccHHHHHHHhhhHHHHHHHHH--hcC
Confidence 44556643322221 35677777777777654 345565555542 223333333332111111233344333 357
Q ss_pred chHHHHHHHHHHHhhCCCCc-hHHHHh--HHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhcC
Q 000832 447 NEVRLATVNGIIYLLGNPLS-HEVLKV--LLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALAND 523 (1263)
Q Consensus 447 DSVRlaVVeGLiaLLkn~~S-he~Lk~--LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~D 523 (1263)
+|-|..+++.+-++..++.. .+.+++ +.-.+.-+..-.+..+|-+.|.+|.++.... .-
T Consensus 1826 PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk------------------l~ 1887 (2235)
T KOG1789|consen 1826 PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK------------------LT 1887 (2235)
T ss_pred hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc------------------cc
Confidence 99999999999999988764 445555 2333334567889999999999976665211 01
Q ss_pred chHHHHHHHHHhcccCCCCCCChHHHhHHHHHHHhcChHHHHHHHHHHhhcC-------CChHHHHHHHHHHHHhhccC-
Q 000832 524 QSQVAQKITRLLMPSYFPLKVNIKEACSRCVTIVKRSPVAGARFCEFAVSEG-------APLESLVELVTVFIRLVLSH- 595 (1263)
Q Consensus 524 s~~V~k~IvkLLipSfFP~k~s~~E~~~RCi~Lik~nP~Aa~~Fy~~a~~~~-------a~~~~l~~Li~~ll~~~ls~- 595 (1263)
.|+|+--+++.|=.- .+--++.+|+|+-.-++--. ++ ++..++--.|+-+..-.|+.
T Consensus 1888 GPrV~ITL~kFLP~~--------------f~d~~RD~PEAaVH~fE~T~-EnPELiWn~~~r~kvS~~i~tM~~~~y~~Q 1952 (2235)
T KOG1789|consen 1888 GPRVTITLIKFLPEI--------------FADSLRDSPEAAVHMFESTS-ENPELIWNEVTRQKVSGIIDTMVGKLYEQQ 1952 (2235)
T ss_pred CCceeeehHHhchHH--------------HHHHHhcCHHHHHHHHhccC-CCcccccCHhHHHHHHHHHHHHHHHHHHHh
Confidence 367877777754222 24568899999985554221 22 22357777777777777763
Q ss_pred -CCC-----ChhHHHHHHHHHH
Q 000832 596 -DKL-----DEDQIEGLLAAVS 611 (1263)
Q Consensus 596 -~k~-----~~e~~eg~~~a~a 611 (1263)
+++ .+||..|+.+|..
T Consensus 1953 Qk~p~~~W~~PEqsAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1953 QKDPTVKWNTPEQSAGTSEADK 1974 (2235)
T ss_pred ccCCcccccCchhhcchhhhcc
Confidence 233 4699999888763
No 148
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.93 E-value=1.1e+03 Score=31.39 Aligned_cols=275 Identities=13% Similarity=0.171 Sum_probs=147.6
Q ss_pred CCCCCHHHHHHHHHHHhhccccccCccchhHHHHHh------cCCHHHHHHHHHHHHhhhcc-CcHHHHHHHhHHHHhhh
Q 000832 214 FDDNSIEDLKLLLIRCVISPLYLKTEDGRKFLAFLF------GLSKPMLKDVLAMIKSQISF-ERKSMLEAYGDVLYRAW 286 (1263)
Q Consensus 214 f~deS~~slk~LLLrc~~sP~FlkseEGrrFLAflF------gl~~~Lik~ih~tIKnQLp~-~~kS~le~YGEIyFrAW 286 (1263)
++.|.-+.+|..+++++-+|-.-+..-.--.+|.+= +.=++|+..+...+.+.=|. .+.+.|++.|=|.-..
T Consensus 83 l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i- 161 (859)
T KOG1241|consen 83 LPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI- 161 (859)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC-
Confidence 466778999999999998877766665556677773 33334444444443332222 3477899999886432
Q ss_pred cccchhhHHHHHHhHHHHHHHHhhccC-CH--HHHHHHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhcCCchHHHHH
Q 000832 287 KGVEEGFREDVESGFLQVLIEGAIHAS-SR--AFAASIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVRQN 363 (1263)
Q Consensus 287 K~A~gd~~eeIE~~cIQdLm~~AIha~-s~--~lAaklR~VLs~FHsqK~~kgVdemL~rLY~PILwRLLka~NftVR~S 363 (1263)
..+..+.--+..+-.+++++-+.. +. .+ +..+-+++..-=.|..-+ .++=-++++-++=-+.+++--.+|+.
T Consensus 162 ---~pevl~~~sN~iLtaIv~gmrk~e~s~~vRL-aa~~aL~nsLef~~~nF~-~E~ern~iMqvvcEatq~~d~~i~~a 236 (859)
T KOG1241|consen 162 ---DPEVLEQQSNDILTAIVQGMRKEETSAAVRL-AALNALYNSLEFTKANFN-NEMERNYIMQVVCEATQSPDEEIQVA 236 (859)
T ss_pred ---CHHHHHHHHhHHHHHHHhhccccCCchhHHH-HHHHHHHHHHHHHHHhhc-cHhhhceeeeeeeecccCCcHHHHHH
Confidence 233444444555666666666543 11 22 234444443222232111 12223455666666777777788887
Q ss_pred HHHHhH----hhcCCCCCccchHHHHHHHHH-HHHHHhhhcCCCChHHHHHHHhhhhHHHHH-------HHhh----CCh
Q 000832 364 ALHLLL----DLFPLEDPDATKEVKDTLFDK-QFFLLEKLLTDDCPDVRVVAVEGCCRILHL-------FWEL----IPS 427 (1263)
Q Consensus 364 A~~LF~----~AFPlvdpd~~rEe~d~EL~k-QF~~L~~LL~DDtPMVRRAAA~gVcriLsk-------fWEi----IP~ 427 (1263)
|-.=|. .-|... ...|.+ +|..-..-...|.+.|-..|++.-|.+-.. |-+. .||
T Consensus 237 a~~ClvkIm~LyY~~m---------~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p 307 (859)
T KOG1241|consen 237 AFQCLVKIMSLYYEFM---------EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPP 307 (859)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 755443 233332 223322 344436667788898888888743322111 1111 121
Q ss_pred -------hHHHHHHHHHHHHhcc-CCC---c--hHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHH
Q 000832 428 -------ATITKIITKIFDDNSH-DLC---N--EVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMAD 494 (1263)
Q Consensus 428 -------~~I~slL~~If~~LAk-DsQ---D--SVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfAD 494 (1263)
.-+..++--|++.|.+ |+. | ++--++=-||.-++.+- ..+++.+++|.++.-|..++||=|-+.+-
T Consensus 308 ~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~-~D~Iv~~Vl~Fiee~i~~pdwr~reaavm 386 (859)
T KOG1241|consen 308 SSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV-GDDIVPHVLPFIEENIQNPDWRNREAAVM 386 (859)
T ss_pred hhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh-cccchhhhHHHHHHhcCCcchhhhhHHHH
Confidence 0111222224455555 332 2 23333333333333322 25566788888888888888888888888
Q ss_pred HHHHhhcccC
Q 000832 495 LLLLLRDIRT 504 (1263)
Q Consensus 495 LLleLk~irg 504 (1263)
.|..+-+-+.
T Consensus 387 AFGSIl~gp~ 396 (859)
T KOG1241|consen 387 AFGSILEGPE 396 (859)
T ss_pred HHHhhhcCCc
Confidence 7777655443
No 149
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.30 E-value=81 Score=40.02 Aligned_cols=63 Identities=24% Similarity=0.175 Sum_probs=44.2
Q ss_pred HHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhh
Q 000832 342 FNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGC 414 (1263)
Q Consensus 342 ~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gV 414 (1263)
++++..+|..++-..-.+.|.+.+--++.+|---+... ..++. |---..|-.-.|||||+-.+
T Consensus 514 qe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~---vv~~l-------Lh~avsD~nDDVrRAAViAl 576 (926)
T COG5116 514 QEMADDYINELLYDKDSILRYNGVFSLALAYVGTGNLG---VVSTL-------LHYAVSDGNDDVRRAAVIAL 576 (926)
T ss_pred HHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcch---hHhhh-------heeecccCchHHHHHHHHhe
Confidence 46677799999999999999998877777876543311 11111 13337888889999998753
No 150
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=36.27 E-value=4.7e+02 Score=34.19 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=61.9
Q ss_pred HHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhh-cCCCchHHHHHHHHHH
Q 000832 418 LHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHL-MQDNVLSVRLAMADLL 496 (1263)
Q Consensus 418 LskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksL-I~DkSWRVRyAfADLL 496 (1263)
+..+-+..|++.+.+-+.+++-.--+|....+--.++..+.-+++...-.-+-+.+||+|.++ .+-....||.+++..|
T Consensus 374 mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~ 453 (700)
T KOG2137|consen 374 MDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCL 453 (700)
T ss_pred HHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHH
Confidence 455667788888888888877666566666666677888887777665344445699999886 6677899999999997
Q ss_pred HHhh
Q 000832 497 LLLR 500 (1263)
Q Consensus 497 leLk 500 (1263)
..+.
T Consensus 454 ~~l~ 457 (700)
T KOG2137|consen 454 AGLI 457 (700)
T ss_pred HHHH
Confidence 7766
No 151
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=35.49 E-value=2e+02 Score=31.95 Aligned_cols=72 Identities=10% Similarity=0.171 Sum_probs=50.8
Q ss_pred cCCHHHHHHHHHHHHhhhcc----CcHHHHHHHhHHHHhhhcccchhh----------HHHHHHhHHHHHHHHhhccCCH
Q 000832 250 GLSKPMLKDVLAMIKSQISF----ERKSMLEAYGDVLYRAWKGVEEGF----------REDVESGFLQVLIEGAIHASSR 315 (1263)
Q Consensus 250 gl~~~Lik~ih~tIKnQLp~----~~kS~le~YGEIyFrAWK~A~gd~----------~eeIE~~cIQdLm~~AIha~s~ 315 (1263)
+|+..++....+++...+.. .+.++.-|+.+||+--+....+.. .+.++ .+|+.|+..+-..+++
T Consensus 125 ~w~~~~v~~~~~~l~~~~l~~~~~~p~Gl~~H~~Di~ldEL~k~~~~~~~~~e~~~~~~~~~~-~ll~PF~~~~~~s~~k 203 (217)
T PF05997_consen 125 GWDKELVEEFNEILSETPLNPNDQVPNGLRYHFADIFLDELEKVGGSESEDEEEENLPAEPLL-LLLEPFVKLLAKSPDK 203 (217)
T ss_pred CCcHHHHHHHHHHHHHccCCCcCCCchhHHHHHHHHHHHHHHHHhcccccchhcccCCHHHHH-HHHHHHHHHHHhCCCH
Confidence 78889999888888877621 467899999999999888876522 23333 3566666666666666
Q ss_pred HHHHHHH
Q 000832 316 AFAASIR 322 (1263)
Q Consensus 316 ~lAaklR 322 (1263)
.+..+++
T Consensus 204 ~l~~~i~ 210 (217)
T PF05997_consen 204 VLRKRIK 210 (217)
T ss_pred HHHHHHH
Confidence 6665554
No 152
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C terminus of a family of cytochrome-like proteins found in bacteria such as Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=35.44 E-value=57 Score=30.52 Aligned_cols=60 Identities=13% Similarity=0.213 Sum_probs=48.8
Q ss_pred hhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHHHHHHhcCchHHHHHHHHHhccc
Q 000832 478 GHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALANDQSQVAQKITRLLMPS 538 (1263)
Q Consensus 478 ksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~LLaRLa~Ds~~V~k~IvkLLipS 538 (1263)
+..+-....++...++.++...+--|+..|.+-+.+|.|..+++.+..++ +.++..++.|
T Consensus 13 k~~L~~~~~~~~~~~~~kl~~YAlGR~~~~~D~~~i~~i~~~~~~~~y~~-~~Li~~iv~S 72 (76)
T PF07624_consen 13 KQYLAERKDQFARCFAEKLLTYALGRPLEFSDRCEIDRIVEAFKANGYRL-RDLILAIVTS 72 (76)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHcCCCH-HHHHHHHHcC
Confidence 33344447899999999999999999999999999999999999998888 4444444444
No 153
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=35.41 E-value=4.8e+02 Score=31.37 Aligned_cols=105 Identities=16% Similarity=0.108 Sum_probs=71.8
Q ss_pred HHHHHHHh-hhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHH-----HHHHHhccCCC-chHHHHHHHHHHHhh
Q 000832 389 DKQFFLLE-KLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIIT-----KIFDDNSHDLC-NEVRLATVNGIIYLL 461 (1263)
Q Consensus 389 ~kQF~~L~-~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~-----~If~~LAkDsQ-DSVRlaVVeGLiaLL 461 (1263)
......++ .++.|+ ++||.+|-. ++..+. .....+..++. -|+..|.+|.. +-=|.++++=+..++
T Consensus 24 ~~~~~~i~~~lL~~~-~~vraa~yR----ilRy~i--~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l 96 (371)
T PF14664_consen 24 SFFGERIQCMLLSDS-KEVRAAGYR----ILRYLI--SDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFL 96 (371)
T ss_pred HHHHHHHHHHHCCCc-HHHHHHHHH----HHHHHH--cCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHH
Confidence 33344445 356666 999998876 333221 23333333333 26778888874 667999999998888
Q ss_pred CCCCc-hHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhh
Q 000832 462 GNPLS-HEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLR 500 (1263)
Q Consensus 462 kn~~S-he~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk 500 (1263)
+.... .+.-..+.-.+-+..+++..|.|.++...|.+++
T Consensus 97 ~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~ 136 (371)
T PF14664_consen 97 EIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELA 136 (371)
T ss_pred HhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 87543 3344557788888899999999999999988877
No 154
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.75 E-value=3.6e+02 Score=36.09 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=113.8
Q ss_pred hcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHH
Q 000832 353 LQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITK 432 (1263)
Q Consensus 353 Lka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~s 432 (1263)
+..+-..+|.-|..-+...+....+.+ .....+.+.+..+.++|+.|-|=-.|+.|+ .-..++.|...+.+
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~-----~~~~ekvl~i~ld~LkdedsyvyLnaI~gv----~~Lcevy~e~il~d 806 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKAT-----LIQGEKVLAIALDTLKDEDSYVYLNAIRGV----VSLCEVYPEDILPD 806 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhh-----hhhHHHHHHHHHHHhcccCceeeHHHHHHH----HHHHHhcchhhHHH
Confidence 334445667777777777777555532 223345566679999999999999999984 44556666665554
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHhhCCC--CchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeee
Q 000832 433 IITKIFDDNSHDLCNEVRLATVNGIIYLLGNP--LSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKV 510 (1263)
Q Consensus 433 lL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~--~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~V 510 (1263)
++. -+..-.+-.+.+-|+.|=|++..++... ........++...-+.+.|+..+-|-.-...|..++-...+...++
T Consensus 807 L~e-~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 807 LSE-EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred HHH-HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 433 2333222335677777767777776533 3455666677888888999999999998888888887766655552
Q ss_pred c-ChHHHHHHH--hcCchHHHHHHHHHhcccCC
Q 000832 511 V-GLDILLSAL--ANDQSQVAQKITRLLMPSYF 540 (1263)
Q Consensus 511 V-~~D~LLaRL--a~Ds~~V~k~IvkLLipSfF 540 (1263)
+ ..-+.+-.+ .+++..|||..+.++...--
T Consensus 886 ~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 886 FHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 1 111112222 23456788777777766544
No 155
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=34.53 E-value=6.4e+02 Score=31.86 Aligned_cols=101 Identities=18% Similarity=0.152 Sum_probs=71.5
Q ss_pred hhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchH---HHHh
Q 000832 396 EKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHE---VLKV 472 (1263)
Q Consensus 396 ~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She---~Lk~ 472 (1263)
.+--.|..+.|=++|++.+.+.++ ...|...|. .|.+++.. ..+.-=+++++.+..+.+....++ .+..
T Consensus 377 Leaa~ds~~~v~~~Aeed~~~~la---s~~P~~~I~-~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~d 448 (516)
T KOG2956|consen 377 LEAAKDSQDEVMRVAEEDCLTTLA---SHLPLQCIV-NISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLPD 448 (516)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHH---hhCchhHHH-HHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhhh
Confidence 455679999999999997655555 445555444 44555544 223344567888888888776654 3445
Q ss_pred HHHhhhhhcCCCchHHHHHHHHHHHHhhcccC
Q 000832 473 LLPRLGHLMQDNVLSVRLAMADLLLLLRDIRT 504 (1263)
Q Consensus 473 LLP~LksLI~DkSWRVRyAfADLLleLk~irg 504 (1263)
+.|.+-....-.|--||.+++=.|..+-...|
T Consensus 449 iaP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred hhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 88888888999999999999999888764443
No 156
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.89 E-value=3.8e+02 Score=32.24 Aligned_cols=219 Identities=17% Similarity=0.138 Sum_probs=111.0
Q ss_pred ccchhHHHHHhcCCHHHHHHHHHHHHhhhccCcHHHHHHHhHHHHhhhcccchhhHHHHHHhHHHHHHHHhhccCCHHHH
Q 000832 239 EDGRKFLAFLFGLSKPMLKDVLAMIKSQISFERKSMLEAYGDVLYRAWKGVEEGFREDVESGFLQVLIEGAIHASSRAFA 318 (1263)
Q Consensus 239 eEGrrFLAflFgl~~~Lik~ih~tIKnQLp~~~kS~le~YGEIyFrAWK~A~gd~~eeIE~~cIQdLm~~AIha~s~~lA 318 (1263)
++-++-++..++-+..+.+++.+..+.... .+.. +-..=.+..+.-.++.|. +++.|++++=+-- .|
T Consensus 51 ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~-----~~~~----~~~~~~~~~s~~le~ke~-ald~Le~lve~iD---nA 117 (342)
T KOG2160|consen 51 KEDRKWLQELMQAHTEDQKDFVEDMKVISD-----VMSM----IPIVILNSSSVDLEDKED-ALDNLEELVEDID---NA 117 (342)
T ss_pred ccchHHHHHHHHHhhhhhhhhcccchhHHH-----HHHh----hhhhccCcccCCHHHHHH-HHHHHHHHHHhhh---hH
Confidence 677788888887777666655544333111 1111 111122334444555553 4666655443211 12
Q ss_pred HHHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhh
Q 000832 319 ASIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKL 398 (1263)
Q Consensus 319 aklR~VLs~FHsqK~~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~L 398 (1263)
..+ |+ ..-..|++- +++....++|..|+-++..+.-.-++....-....-+++++ ..|
T Consensus 118 ndl-------~~-----------~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll---~~l 175 (342)
T KOG2160|consen 118 NDL-------IS-----------LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL---KIL 175 (342)
T ss_pred HhH-------hh-----------ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH---HHH
Confidence 111 11 123456666 89999999999999999999877654321111111233333 666
Q ss_pred cCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHH----HHHHHhccCCCchHHHH--HHHHHHHhhCCCCchHH-HH
Q 000832 399 LTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIIT----KIFDDNSHDLCNEVRLA--TVNGIIYLLGNPLSHEV-LK 471 (1263)
Q Consensus 399 L~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~----~If~~LAkDsQDSVRla--VVeGLiaLLkn~~She~-Lk 471 (1263)
-.|++-.||+.|--.++..+..+ ++. +..++. .++.+.-.+..++||+. ++.=+..++....++.. .+
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~----~~g-~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNN----KPG-QDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcC----cHH-HHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 78888889888887666555532 221 111111 22333334433444443 34445555554444332 21
Q ss_pred -hHHH-hhhhhcCCCchHHHHHHHHHHH
Q 000832 472 -VLLP-RLGHLMQDNVLSVRLAMADLLL 497 (1263)
Q Consensus 472 -~LLP-~LksLI~DkSWRVRyAfADLLl 497 (1263)
..+| .+.+++.--.|-++.++.+.+.
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l 278 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALL 278 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHH
Confidence 2333 2344444455566666555543
No 157
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=33.51 E-value=68 Score=33.53 Aligned_cols=128 Identities=18% Similarity=0.116 Sum_probs=67.2
Q ss_pred CchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHH--
Q 000832 356 ANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKI-- 433 (1263)
Q Consensus 356 ~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~sl-- 433 (1263)
-...+|..|.-++.-.. +..+++..+.+.+.+ ..++.+..+.-...|+.-+.-+++ .. ++...++
T Consensus 17 ~~~~~r~~a~v~l~k~l-----~~~~~~~~~~~~~~i---~~~~~~~~~d~~i~~~~~l~~lfp----~~-~dv~~~l~~ 83 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLL-----DAAREEFKEKISDFI---ESLLDEGEMDSLIIAFSALTALFP----GP-PDVGSELFL 83 (157)
T ss_dssp TSCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH---HHHHCCHHCCHHHHHHHHHHHHCT----TT-HHHHHHHCC
T ss_pred CCHhHHHHHHHHHHHHH-----HHhHHHHHHHHHHHH---HHHHccccchhHHHHHHHHHHHhC----CC-HHHHHHHHh
Confidence 35578999999998874 233344444454444 666655444433333332222333 22 2222222
Q ss_pred ---HHHHHHHhcc-CC-CchHHHHHHHHHHHhhCCCCc-hHHHHhHHHhhhhhc-CCCchH-HHHHHHHHH
Q 000832 434 ---ITKIFDDNSH-DL-CNEVRLATVNGIIYLLGNPLS-HEVLKVLLPRLGHLM-QDNVLS-VRLAMADLL 496 (1263)
Q Consensus 434 ---L~~If~~LAk-Ds-QDSVRlaVVeGLiaLLkn~~S-he~Lk~LLP~LksLI-~DkSWR-VRyAfADLL 496 (1263)
+.+++..++. +. ...+-.++++.+.+-.-.... .-+.++.++-++.+. ++++.+ ||..++=-|
T Consensus 84 ~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 84 SEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp TTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred hhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 2233333443 44 456778888888766544333 335677889999988 455454 555444333
No 158
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=33.04 E-value=2.7e+02 Score=30.71 Aligned_cols=81 Identities=21% Similarity=0.124 Sum_probs=50.1
Q ss_pred hhhcCCCChHHHHHHHhhhhHHHHH-HHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCc-----hHH
Q 000832 396 EKLLTDDCPDVRVVAVEGCCRILHL-FWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLS-----HEV 469 (1263)
Q Consensus 396 ~~LL~DDtPMVRRAAA~gVcriLsk-fWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~S-----he~ 469 (1263)
.+-++.-..--|-.|.+|+-..|.. -++.+ -+.+.+++.+|-+.|. -..++|...+++++..|+..... -+.
T Consensus 44 ~dGL~Et~~Py~flA~~g~~dll~~~~~~ki-lPvlPqLI~plk~AL~-tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPy 121 (183)
T PF10274_consen 44 FDGLRETEHPYRFLARQGIKDLLERGGGEKI-LPVLPQLIIPLKRALN-TRDPEVFCATLKALQQLVTSSDMVGEALVPY 121 (183)
T ss_pred HhhhhccCccHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4444444444578888887777765 33332 2456666667767663 33478999999999998543211 334
Q ss_pred HHhHHHhhh
Q 000832 470 LKVLLPRLG 478 (1263)
Q Consensus 470 Lk~LLP~Lk 478 (1263)
++++||.+.
T Consensus 122 yrqLLp~ln 130 (183)
T PF10274_consen 122 YRQLLPVLN 130 (183)
T ss_pred HHHHHHHHH
Confidence 566777665
No 159
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=32.83 E-value=1.8e+02 Score=29.67 Aligned_cols=101 Identities=19% Similarity=0.183 Sum_probs=64.3
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccCCceeeecChH
Q 000832 435 TKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLD 514 (1263)
Q Consensus 435 ~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D 514 (1263)
..++.+...+...+--...+-.++.++... ...-+..+..|+.=+..++.+|-+.+..+|..+.+.-|..|..-|.-.
T Consensus 7 ~~li~kATs~~~~~~Dw~~~l~icD~i~~~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~ 84 (140)
T PF00790_consen 7 TELIEKATSESLPSPDWSLILEICDLINSS--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASK 84 (140)
T ss_dssp HHHHHHHT-TTSSS--HHHHHHHHHHHHTS--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH
T ss_pred HHHHHHHhCcCCCCCCHHHHHHHHHHHHcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHH
Confidence 344444444443333444444455555432 223344555565556669999999999999999999999998888777
Q ss_pred HHHHHHh---cCc--hH---HHHHHHHHhcc
Q 000832 515 ILLSALA---NDQ--SQ---VAQKITRLLMP 537 (1263)
Q Consensus 515 ~LLaRLa---~Ds--~~---V~k~IvkLLip 537 (1263)
.++..|. .++ .. |++++.++|..
T Consensus 85 ~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 85 EFLDELVKLIKSKKTDPETPVKEKILELLQE 115 (140)
T ss_dssp HHHHHHHHHHHHTTTHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHHH
Confidence 7766554 332 22 89999888865
No 160
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=32.58 E-value=1.1e+02 Score=27.21 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=27.5
Q ss_pred HHhhhc-CCC-ChHHHHHHHhhhhHHHHHHHh--------hCChhH
Q 000832 394 LLEKLL-TDD-CPDVRVVAVEGCCRILHLFWE--------LIPSAT 429 (1263)
Q Consensus 394 ~L~~LL-~DD-tPMVRRAAA~gVcriLskfWE--------iIP~~~ 429 (1263)
.+..++ .+. .+.||-.|+.-+...+..+|. .+|++.
T Consensus 18 ~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~ 63 (77)
T PF03810_consen 18 YLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEE 63 (77)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHH
Confidence 345555 333 699999999999999999999 777543
No 161
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=32.50 E-value=1.1e+03 Score=29.42 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=72.4
Q ss_pred chHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCC---ChHHHHHHHh
Q 000832 336 GVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDD---CPDVRVVAVE 412 (1263)
Q Consensus 336 gVdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DD---tPMVRRAAA~ 412 (1263)
.+-+.+.+.+...+..+.+.....-+.-+.--+.-+ .. +.. ...|...+.++ .+.||.+|+.
T Consensus 482 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g~-~~~------------i~~l~~~i~~~~~~~~~~R~~Ai~ 546 (618)
T PF01347_consen 482 CIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--GH-PES------------IPVLLPYIEGKEEVPHFIRVAAIQ 546 (618)
T ss_dssp S--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T--GGG------------HHHHHTTSTTSS-S-HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--CC-chh------------hHHHHhHhhhccccchHHHHHHHH
Confidence 444455556666666666666655554443333322 00 111 23346667777 8999999998
Q ss_pred hhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHH
Q 000832 413 GCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAM 492 (1263)
Q Consensus 413 gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAf 492 (1263)
.+ ..+.+.. +..+.+.+.+||.+-..| .+||++++..+. +...+...++.+.-. +-.|++..|+-.+
T Consensus 547 Al----r~~~~~~-~~~v~~~l~~I~~n~~e~--~EvRiaA~~~lm---~~~P~~~~l~~i~~~---l~~E~~~QV~sfv 613 (618)
T PF01347_consen 547 AL----RRLAKHC-PEKVREILLPIFMNTTED--PEVRIAAYLILM---RCNPSPSVLQRIAQS---LWNEPSNQVASFV 613 (618)
T ss_dssp TT----TTGGGT--HHHHHHHHHHHHH-TTS---HHHHHHHHHHHH---HT---HHHHHHHHHH---HTT-S-HHHHHHH
T ss_pred HH----HHHhhcC-cHHHHHHHHHHhcCCCCC--hhHHHHHHHHHH---hcCCCHHHHHHHHHH---HhhCchHHHHHHH
Confidence 64 4443333 567777778888764433 459999986554 443445555555443 3469999999887
Q ss_pred HHHH
Q 000832 493 ADLL 496 (1263)
Q Consensus 493 ADLL 496 (1263)
-..|
T Consensus 614 ~S~L 617 (618)
T PF01347_consen 614 YSHL 617 (618)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6543
No 162
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=32.34 E-value=1.3e+03 Score=30.28 Aligned_cols=148 Identities=16% Similarity=0.195 Sum_probs=98.4
Q ss_pred CCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHH
Q 000832 355 AANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKII 434 (1263)
Q Consensus 355 a~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL 434 (1263)
.+-..||..|.+-+.+-.-.+.....+|+.++.+.+-. -+--+-+...|-.+|-..+|++...|.+.++ .+..+-|
T Consensus 189 et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvv---ceatq~~d~e~q~aafgCl~kim~LyY~fm~-~ymE~aL 264 (858)
T COG5215 189 ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVV---CEATQGNDEELQHAAFGCLNKIMMLYYKFMQ-SYMENAL 264 (858)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheee---ehhccCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34567888877777663333323334444444443332 3334567788888888889999999999998 6677777
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHHh-----------hCCCC----c----hHHHHhHHHhhhhhcC-------CCchHH
Q 000832 435 TKIFDDNSHDLCNEVRLATVNGIIYL-----------LGNPL----S----HEVLKVLLPRLGHLMQ-------DNVLSV 488 (1263)
Q Consensus 435 ~~If~~LAkDsQDSVRlaVVeGLiaL-----------Lkn~~----S----he~Lk~LLP~LksLI~-------DkSWRV 488 (1263)
-.+....-+...|.|.+.+||=-..+ ...|. . ....+.+||.|.+++. |..|-+
T Consensus 265 ~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~ 344 (858)
T COG5215 265 AALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNP 344 (858)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccch
Confidence 77777777777799999998843222 12221 1 2235568999988865 568999
Q ss_pred HHHHHHHHHHhhcccCCc
Q 000832 489 RLAMADLLLLLRDIRTFQ 506 (1263)
Q Consensus 489 RyAfADLLleLk~irgiK 506 (1263)
-.+++..|.-.+...|.+
T Consensus 345 smaA~sCLqlfaq~~gd~ 362 (858)
T COG5215 345 SMAASSCLQLFAQLKGDK 362 (858)
T ss_pred hhhHHHHHHHHHHHhhhH
Confidence 999888877776666655
No 163
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.15 E-value=5.9e+02 Score=36.10 Aligned_cols=151 Identities=15% Similarity=0.183 Sum_probs=89.0
Q ss_pred HHHHHHHHhhccC-CHHHHHHHHHHHhhHhhc------C-CCcchHHHHHHhhHHHHHHhhcCCc---hHHHHHHHHHhH
Q 000832 301 FLQVLIEGAIHAS-SRAFAASIRRVLGGFVNQ------R-TTPGVEKMLFNLTEPVMFRSLQAAN---SNVRQNALHLLL 369 (1263)
Q Consensus 301 cIQdLm~~AIha~-s~~lAaklR~VLs~FHsq------K-~~kgVdemL~rLY~PILwRLLka~N---ftVR~SA~~LF~ 369 (1263)
|+.+++..+-.-. +-.--..+|..-.++... + .+.+..+.-.+.|.|++.++...-+ -.||..|...+.
T Consensus 1120 cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF 1199 (1514)
T KOG0929|consen 1120 CLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLF 1199 (1514)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHH
Confidence 6666666444222 111112445555555544 1 0112234456788999998887766 567888877777
Q ss_pred hhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHH--------HHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHh
Q 000832 370 DLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRV--------VAVEGCCRILHLFWELIPSATITKIITKIFDDN 441 (1263)
Q Consensus 370 ~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRR--------AAA~gVcriLskfWEiIP~~~I~slL~~If~~L 441 (1263)
++.-..+.+..++.-+..++..|..+..+=.|..+-+|. -|.+.+|.++..|.+.+. ......+.-+..-.
T Consensus 1200 ~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~-~lL~~~~~ll~~ci 1278 (1514)
T KOG0929|consen 1200 DILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLN-NLLPKVLGLLVGCI 1278 (1514)
T ss_pred HHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 666666665655544555555555555555555554443 356667778888888876 55555555555556
Q ss_pred ccCCCchHHHH
Q 000832 442 SHDLCNEVRLA 452 (1263)
Q Consensus 442 AkDsQDSVRla 452 (1263)
-+|.|+.+|..
T Consensus 1279 ~~~n~~la~~g 1289 (1514)
T KOG0929|consen 1279 KQDNQQLARIG 1289 (1514)
T ss_pred cCcchhhHHhH
Confidence 66777777764
No 164
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.03 E-value=3.9e+02 Score=33.74 Aligned_cols=148 Identities=16% Similarity=0.128 Sum_probs=94.3
Q ss_pred hhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHh
Q 000832 344 LTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWE 423 (1263)
Q Consensus 344 LY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWE 423 (1263)
...|++.-+......+...||+=.+.-++..-+|... =..+...+..|..|+.+..++|..=|+-. ++...+
T Consensus 195 ~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~----~~~v~~iLp~L~~ll~~~D~~Vl~Da~WA----lsyLsd 266 (514)
T KOG0166|consen 195 ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPP----FDVVAPILPALLRLLHSTDEEVLTDACWA----LSYLTD 266 (514)
T ss_pred chHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCc----HHHHHHHHHHHHHHHhcCCHHHHHHHHHH----HHHHhc
Confidence 4456665555665667888888888888877766442 13466777889999999999999877764 343333
Q ss_pred hCChhHHHHHH-----HHHHHHhccCCCchHHHHHHHHHHHhhCCC--CchHHHHh-HHHhhhhhcC-CCchHHHHHHHH
Q 000832 424 LIPSATITKII-----TKIFDDNSHDLCNEVRLATVNGIIYLLGNP--LSHEVLKV-LLPRLGHLMQ-DNVLSVRLAMAD 494 (1263)
Q Consensus 424 iIP~~~I~slL-----~~If~~LAkDsQDSVRlaVVeGLiaLLkn~--~She~Lk~-LLP~LksLI~-DkSWRVRyAfAD 494 (1263)
--+ +.|.-.+ ..++.-| .-..+.|+..++..+..|.--. +.+.++.. +||.+.+++. -+...+|..++=
T Consensus 267 g~n-e~iq~vi~~gvv~~LV~lL-~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 267 GSN-EKIQMVIDAGVVPRLVDLL-GHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW 344 (514)
T ss_pred CCh-HHHHHHHHccchHHHHHHH-cCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence 222 2222222 2344444 4445667766666665554321 12333333 8899999888 667779998888
Q ss_pred HHHHhhc
Q 000832 495 LLLLLRD 501 (1263)
Q Consensus 495 LLleLk~ 501 (1263)
.+..|..
T Consensus 345 ~iSNItA 351 (514)
T KOG0166|consen 345 TISNITA 351 (514)
T ss_pred HHHHhhc
Confidence 8777775
No 165
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=30.68 E-value=4.7e+02 Score=31.13 Aligned_cols=138 Identities=17% Similarity=0.157 Sum_probs=75.4
Q ss_pred HHHHHHhHHHHhhhcccchhhHHHHHHhHHHHHHHHhhccCCHHHH-HHHHHHHhhHhhcCCCcchHHHH---HHhhHHH
Q 000832 273 SMLEAYGDVLYRAWKGVEEGFREDVESGFLQVLIEGAIHASSRAFA-ASIRRVLGGFVNQRTTPGVEKML---FNLTEPV 348 (1263)
Q Consensus 273 S~le~YGEIyFrAWK~A~gd~~eeIE~~cIQdLm~~AIha~s~~lA-aklR~VLs~FHsqK~~kgVdemL---~rLY~PI 348 (1263)
..+-+||+|+--.=|. +.=.+--++..++..|.+. +..++=.+| ..+..+=..|-.+|. =|.+-+ +.-|...
T Consensus 138 dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~-~~~~~Fdiasdaf~t~~~llt~hk~--~~a~fl~~n~d~ff~~ 213 (335)
T PF08569_consen 138 DIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKY-VQLPNFDIASDAFSTFKELLTRHKK--LVAEFLSNNYDRFFQK 213 (335)
T ss_dssp TTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHH-TTSSSHHHHHHHHHHHHHHHHSSHH--HHHHHHHHTHHHHHHH
T ss_pred cccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHH-hcCCccHhHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHH
Confidence 3466777776555444 2223345556666666665 333322222 333333333333432 123333 3333448
Q ss_pred HHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHH-----HHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHh
Q 000832 349 MFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVK-----DTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWE 423 (1263)
Q Consensus 349 LwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~-----d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWE 423 (1263)
...++.++||..|..+.-|+.++.- ++.. ...+ +.+-. .+++.|++|+...||-.|-. +...|..
T Consensus 214 ~~~Ll~s~NYvtkrqslkLL~elll--dr~n-~~vm~~yi~~~~nL---kl~M~lL~d~sk~Iq~eAFh----vFKvFVA 283 (335)
T PF08569_consen 214 YNKLLESSNYVTKRQSLKLLGELLL--DRSN-FNVMTRYISSPENL---KLMMNLLRDKSKNIQFEAFH----VFKVFVA 283 (335)
T ss_dssp HHHHCT-SSHHHHHHHHHHHHHHHH--SGGG-HHHHHHHTT-HHHH---HHHHHHTT-S-HHHHHHHHH----HHHHHHH
T ss_pred HHHHccCCCeEeehhhHHHHHHHHH--chhH-HHHHHHHHCCHHHH---HHHHHHhcCcchhhhHHHHH----HHHHHHh
Confidence 8899999999999999999998742 3321 1111 11222 45699999999999999875 4555544
Q ss_pred h
Q 000832 424 L 424 (1263)
Q Consensus 424 i 424 (1263)
.
T Consensus 284 N 284 (335)
T PF08569_consen 284 N 284 (335)
T ss_dssp -
T ss_pred C
Confidence 4
No 166
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=30.14 E-value=2.8e+02 Score=34.31 Aligned_cols=246 Identities=17% Similarity=0.221 Sum_probs=135.4
Q ss_pred hhHhhhhhcccccccCCCCCCHHHHHHHHHHHhhccccccCccchhHHHHHhcCCH---HHHHHHHHHHH-hhhccCcHH
Q 000832 198 DVHRVYSFRDAFALFDFDDNSIEDLKLLLIRCVISPLYLKTEDGRKFLAFLFGLSK---PMLKDVLAMIK-SQISFERKS 273 (1263)
Q Consensus 198 dI~RL~~lReal~llDf~deS~~slk~LLLrc~~sP~FlkseEGrrFLAflFgl~~---~Lik~ih~tIK-nQLp~~~kS 273 (1263)
.++|++.-...+ .+.+...+.|.-+++-+.+-.| +|-.+|+-++.+-.. .+-...-..+| -+.+.-...
T Consensus 200 ~~~r~~~~~~~~----~~~~~L~~~K~~il~fL~sg~f---~d~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~ 272 (501)
T PF13001_consen 200 SAKRIEGKGPTF----PSRENLTERKLAILKFLASGFF---PDEERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPD 272 (501)
T ss_pred hhhhhhccCCCC----CcHHHHHHHHHHHHHHHHhcCC---CcHhHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHH
Confidence 456666655443 2336788899989998888777 677889988873332 12111122222 233456677
Q ss_pred HHHHHhHHHHhhhcc---------cchhhHHHHHHhHHHHHHHH----------------hhccCCHHHHHHHHHHHhhH
Q 000832 274 MLEAYGDVLYRAWKG---------VEEGFREDVESGFLQVLIEG----------------AIHASSRAFAASIRRVLGGF 328 (1263)
Q Consensus 274 ~le~YGEIyFrAWK~---------A~gd~~eeIE~~cIQdLm~~----------------AIha~s~~lAaklR~VLs~F 328 (1263)
+++..=.+|.= ++ +.-.++++ +++.|+.. +++... -..++|..--.|
T Consensus 273 ~V~~L~~Ly~G--~~~~~~~~~~pa~~~lq~k----IL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~--~~~klk~~~l~F 344 (501)
T PF13001_consen 273 LVDRLFDLYLG--KGIPPENGRPPASPRLQEK----ILSLLSKSVIAATSFPNILQIVFDGLYSDN--TNSKLKSLALQF 344 (501)
T ss_pred HHHHHHHHHHh--cCCchhcCCCCCCHHHHHH----HHHHHHHhHHHHhCCccHHHHHhccccCCc--cccccchhcchh
Confidence 77777777773 22 12234444 34444332 222220 012333332233
Q ss_pred h---hcCC---CcchHHHHHHhhHHHHHHhhc--------CCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHH
Q 000832 329 V---NQRT---TPGVEKMLFNLTEPVMFRSLQ--------AANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFL 394 (1263)
Q Consensus 329 H---sqK~---~kgVdemL~rLY~PILwRLLk--------a~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~ 394 (1263)
. .+-. ...+-+.+-.....=+|+..+ .+.-..|..|=.-+...-.+.+.-..+ + =..++.+|
T Consensus 345 ~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~-d-~~li~~LF-- 420 (501)
T PF13001_consen 345 IRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSK-D-LSLIEFLF-- 420 (501)
T ss_pred hhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccc-c-HHHHHHHH--
Confidence 3 1100 111112222222223355552 345567766544444443333221111 0 13455555
Q ss_pred HhhhcCCCChHHHHHHHhhhhHHHHHHHhhCC--hhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCC
Q 000832 395 LEKLLTDDCPDVRVVAVEGCCRILHLFWELIP--SATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNP 464 (1263)
Q Consensus 395 L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP--~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~ 464 (1263)
..| .+++|+||.+.-+.+..+++.|.+.-+ .......+..++.....+...++|..+|+=........
T Consensus 421 -~sL-~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~fpf~ 490 (501)
T PF13001_consen 421 -DSL-EDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACFPFS 490 (501)
T ss_pred -HHh-hCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCCcc
Confidence 555 999999999988888888888887765 23455555567777777778999999999888777653
No 167
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=30.03 E-value=1.7e+02 Score=31.23 Aligned_cols=120 Identities=18% Similarity=0.147 Sum_probs=69.9
Q ss_pred cchhHHHHHhcCCHHHHHHHHHHHHhhhccCcHHHHHHHhHHHHhhhcccchhhHHHHHHhHHHHHHHHhhccCCHHHHH
Q 000832 240 DGRKFLAFLFGLSKPMLKDVLAMIKSQISFERKSMLEAYGDVLYRAWKGVEEGFREDVESGFLQVLIEGAIHASSRAFAA 319 (1263)
Q Consensus 240 EGrrFLAflFgl~~~Lik~ih~tIKnQLp~~~kS~le~YGEIyFrAWK~A~gd~~eeIE~~cIQdLm~~AIha~s~~lAa 319 (1263)
=|+.+|-.+|..|.....+|.+.+.|.|-....+...+|-+.+..--+.+.-.+.+.... |+.++++.-+.| +..+.
T Consensus 37 LG~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~--l~~~ld~l~~lp-~~~a~ 113 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSK--LKELLDYLSFLP-GDVAI 113 (158)
T ss_dssp HHHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HH--HHGGGGGTTTS--HHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHH--HHHHHHHHHhCC-HHHHH
Confidence 589999999999999999999999998865555555778777777777666555554443 556666666665 34443
Q ss_pred HHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHh
Q 000832 320 SIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLL 368 (1263)
Q Consensus 320 klR~VLs~FHsqK~~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF 368 (1263)
.+-+-+.+..+ +...+.+...=++.+++=..-..+|..|+.=|
T Consensus 114 ~ll~Al~PLi~------~s~~lrd~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 114 GLLRALLPLIK------FSPSLRDSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp HHHHHHHHHHT------T-HHHHHHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHh------cCHHHHHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 33333322222 22344445555566666555667777766533
No 168
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=28.49 E-value=1.6e+03 Score=30.11 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=50.6
Q ss_pred hccccc-cCccchhHHHHHhcC-CHHHHHHHHHHHHhhhccCcHHHHHHHhH-HHHhhhcccchhhHHHHHHhHHHHHHH
Q 000832 231 ISPLYL-KTEDGRKFLAFLFGL-SKPMLKDVLAMIKSQISFERKSMLEAYGD-VLYRAWKGVEEGFREDVESGFLQVLIE 307 (1263)
Q Consensus 231 ~sP~Fl-kseEGrrFLAflFgl-~~~Lik~ih~tIKnQLp~~~kS~le~YGE-IyFrAWK~A~gd~~eeIE~~cIQdLm~ 307 (1263)
..|.+. ++..|-|||--.+-. ....+..+...|..+++ .-+...||+ +.=+-...+....+..+=..+.-.+..
T Consensus 441 ~~~~~~~~Dq~g~r~LQk~Lds~s~~~~~~~~~e~~d~~~---eLs~d~fGNyliQK~fe~~s~~q~~~ml~~~~~~~~~ 517 (777)
T COG5099 441 PSIIVSCKDQHGSRFLQKLLDSNSSPEIEVIFNEILDQLV---ELSSDYFGNYLIQKLFEYGSEIQKSIMLSKSSKHLVS 517 (777)
T ss_pred CccccccCCcHHHHHHHHHhcccchHHHHHHHHHHhhhhH---HHHHhhhcchhhHHHHHhccHHHHHHHHHHhhhhHHH
Confidence 446666 899999999998844 33445555655555444 778899998 555555555555555444445555555
Q ss_pred HhhccC
Q 000832 308 GAIHAS 313 (1263)
Q Consensus 308 ~AIha~ 313 (1263)
.++|.-
T Consensus 518 ls~~~~ 523 (777)
T COG5099 518 LSVHKY 523 (777)
T ss_pred hhcccc
Confidence 555544
No 169
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=28.23 E-value=4.6e+02 Score=28.65 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=73.4
Q ss_pred HHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCC
Q 000832 347 PVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIP 426 (1263)
Q Consensus 347 PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP 426 (1263)
|.+-++....|-.-...|-.++..- +.+++.. .=+.|...| ..|.||.-|+.. |. ..|
T Consensus 47 ~~~L~sv~W~~~~e~~e~~~ll~~W-~~~~~~~----aL~LL~~~~---------~~~~Vr~yAV~~----L~----~~~ 104 (184)
T smart00145 47 PKFLLSVNWSDADEVAQALSLLKKW-APLDPED----ALELLSPKF---------PDPFVRAYAVER----LE----SAS 104 (184)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHcC-CCCCHHH----HHHHhCccC---------CCHHHHHHHHHH----HH----hCC
Confidence 3333555555655455566665543 4444421 122333333 358999999983 44 578
Q ss_pred hhHHHHHHHHHHHHhccCC---CchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHHHHH
Q 000832 427 SATITKIITKIFDDNSHDL---CNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMA 493 (1263)
Q Consensus 427 ~~~I~slL~~If~~LAkDs---QDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRyAfA 493 (1263)
.+.+...|-++++.|-.|. +.-++++.=.++. +...-..++-.++.-++|+..+-|+...
T Consensus 105 d~~l~~yLpQLVQaLr~E~~~~~~L~~fLl~ra~~-------s~~~~~~l~W~L~~e~~~~~~~~r~~~~ 167 (184)
T smart00145 105 DEELLLYLLQLVQALKYEPYLDSALARFLLERALK-------NQRLGHFFYWYLKSELEDPHYSIRFGLL 167 (184)
T ss_pred HHHHHHHHHHHHHHHHcccccccHHHHHHHHHHhh-------CHHHHHHHHHHHHHHccCchhHHHHHHH
Confidence 8999999999999998884 2334443322222 1234455888899889999988888654
No 170
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=27.87 E-value=1.4e+02 Score=32.83 Aligned_cols=80 Identities=24% Similarity=0.178 Sum_probs=63.1
Q ss_pred HHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCc---hHHHHhHHHhhhhhcCCCchHHHHHHHHHH
Q 000832 420 LFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLS---HEVLKVLLPRLGHLMQDNVLSVRLAMADLL 496 (1263)
Q Consensus 420 kfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~S---he~Lk~LLP~LksLI~DkSWRVRyAfADLL 496 (1263)
.-|..=|...--.-+.++|-+=.++...--|+.+.+|+..|++.-.. .+++.++.+.|+..++-++..|..++.+.|
T Consensus 25 l~W~~~~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~L 104 (183)
T PF10274_consen 25 LQWKVDPEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKAL 104 (183)
T ss_pred eEEecChhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34777666655666778887766788888999999999999987222 446667888899999999999999999987
Q ss_pred HHh
Q 000832 497 LLL 499 (1263)
Q Consensus 497 leL 499 (1263)
..+
T Consensus 105 q~L 107 (183)
T PF10274_consen 105 QQL 107 (183)
T ss_pred HHH
Confidence 666
No 171
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=27.83 E-value=1e+03 Score=27.62 Aligned_cols=50 Identities=16% Similarity=0.076 Sum_probs=30.8
Q ss_pred HHHHHHHhhhcCCC--ChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhc
Q 000832 389 DKQFFLLEKLLTDD--CPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNS 442 (1263)
Q Consensus 389 ~kQF~~L~~LL~DD--tPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LA 442 (1263)
...++++.-++-.. .+.||+.|..-+.+++. .-|......++..+.+-+.
T Consensus 203 ~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~----~~~~~l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 203 SAWAQAFIYLLCSSNVSWKVRRAALSALKKLYA----SNPELLSKSLISGLWKWLS 254 (339)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH----hChHHHHHHHHHHHHHHHH
Confidence 34455667777777 89999999986555555 3333344444444444443
No 172
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=26.89 E-value=4.2e+02 Score=35.24 Aligned_cols=88 Identities=18% Similarity=0.116 Sum_probs=59.8
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchH
Q 000832 389 DKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHE 468 (1263)
Q Consensus 389 ~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She 468 (1263)
...++++...+.+-.|.+|.....-+-+.+..+=...+.......+.+.+-..++|.+..||.++.+++.++.+... ++
T Consensus 370 ~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G-e~ 448 (815)
T KOG1820|consen 370 SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG-EE 448 (815)
T ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh-HH
Confidence 34456678889999999998877644444444442233344444556777788999999999999999999887643 44
Q ss_pred HHHhHHHhh
Q 000832 469 VLKVLLPRL 477 (1263)
Q Consensus 469 ~Lk~LLP~L 477 (1263)
.++.+|-.+
T Consensus 449 ~~~k~L~~~ 457 (815)
T KOG1820|consen 449 VFKKLLKDL 457 (815)
T ss_pred HHHHHHHhh
Confidence 444444333
No 173
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=26.23 E-value=2.1e+02 Score=29.92 Aligned_cols=99 Identities=18% Similarity=0.175 Sum_probs=60.7
Q ss_pred HhhhcC-CCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCc--hHHH-
Q 000832 395 LEKLLT-DDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLS--HEVL- 470 (1263)
Q Consensus 395 L~~LL~-DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~S--he~L- 470 (1263)
|..|+. ..++.||..|.- ++.+|-+.- ++...+.+...++.+..+...+-.+.++..+.++..-+.. ...+
T Consensus 9 L~~L~~~~~~~~~r~~a~v----~l~k~l~~~-~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~ 83 (157)
T PF11701_consen 9 LTSLDMLRQPEEVRSHALV----ILSKLLDAA-REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFL 83 (157)
T ss_dssp HHHHHCTTTSCCHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCC
T ss_pred HHHhcccCCCHhHHHHHHH----HHHHHHHHh-HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 355664 789999999998 556664333 3445556666777766665555666677777777776543 1111
Q ss_pred -HhHHHhhhhhcC--CCchHHHHHHHHHHHH
Q 000832 471 -KVLLPRLGHLMQ--DNVLSVRLAMADLLLL 498 (1263)
Q Consensus 471 -k~LLP~LksLI~--DkSWRVRyAfADLLle 498 (1263)
+.+++.+..++. -++..+-.+++++|..
T Consensus 84 ~eg~~~~l~~~~~~~~~~~~~~~~~lell~a 114 (157)
T PF11701_consen 84 SEGFLESLLPLASRKSKDRKVQKAALELLSA 114 (157)
T ss_dssp TTTHHHHHHHHHH-CTS-HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 124455555555 6777788888777443
No 174
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.14 E-value=7.8e+02 Score=33.50 Aligned_cols=108 Identities=16% Similarity=0.132 Sum_probs=72.8
Q ss_pred HhhhcCCCChHH-HHHHHhhhhHHHHHHHhhC-----C---hhHHHHHHH-HHHHHhccCCCchHHHHHHHHHHHhhCCC
Q 000832 395 LEKLLTDDCPDV-RVVAVEGCCRILHLFWELI-----P---SATITKIIT-KIFDDNSHDLCNEVRLATVNGIIYLLGNP 464 (1263)
Q Consensus 395 L~~LL~DDtPMV-RRAAA~gVcriLskfWEiI-----P---~~~I~slL~-~If~~LAkDsQDSVRlaVVeGLiaLLkn~ 464 (1263)
|.-...|..|+. |.+|+..+...+.++|... | .+.-+..+. .|+..+.+- -..+|.+.-.++..|+...
T Consensus 42 LqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~irenIl~~iv~~-p~~iRvql~~~l~~Ii~~D 120 (1010)
T KOG1991|consen 42 LQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRENILETIVQV-PELIRVQLTACLNTIIKAD 120 (1010)
T ss_pred HHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHhcC
Confidence 344456668876 9999999999999999887 1 111111111 222333222 3569999888888887654
Q ss_pred CchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcccC
Q 000832 465 LSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIRT 504 (1263)
Q Consensus 465 ~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~irg 504 (1263)
-. +..-.++|.++.+++-..--+=|...-+|..|.+.--
T Consensus 121 ~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye 159 (1010)
T KOG1991|consen 121 YP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYE 159 (1010)
T ss_pred Cc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHh
Confidence 33 4455689999999998887777777777777765544
No 175
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.96 E-value=1.9e+02 Score=35.02 Aligned_cols=61 Identities=21% Similarity=0.110 Sum_probs=46.8
Q ss_pred HHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhh
Q 000832 349 MFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCC 415 (1263)
Q Consensus 349 LwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVc 415 (1263)
+.|.++.++..=|.-++......|-..+ .. +.++++.++.+.-|+.|.++.||+.++..+.
T Consensus 12 ~i~~~~~a~~~eR~~~A~~l~~~~~~~~--~s----r~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~ 72 (364)
T COG5330 12 LIRLLEEASSGERALAARVLAFASLQRP--LS----REDMRQFEDLARPLLDDSSEEVRRELAAALA 72 (364)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCc--cc----HHHHHHHHHHHHHHhhCccHHHHHHHHHHHH
Confidence 4466677777778888888887776654 22 4667777788999999999999999998643
No 176
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=25.85 E-value=1e+03 Score=27.16 Aligned_cols=145 Identities=15% Similarity=0.159 Sum_probs=91.8
Q ss_pred HHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHH-HHHhhhcC--------CCChHHHHHH
Q 000832 340 MLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQF-FLLEKLLT--------DDCPDVRVVA 410 (1263)
Q Consensus 340 mL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF-~~L~~LL~--------DDtPMVRRAA 410 (1263)
....++.|.+=.++....-.+|..+|.++..+...+++.....=.++-+.+.| +++...|- |+++.+=.+|
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 34567788888899999999999999999988887765330000123333333 45566666 7777777766
Q ss_pred HhhhhHHHHHHHhh-CC--hhHHHHHHHH-HHHHhccCCC---chHHHHHHHHHHHhhCCCCc--hHHHHhHHHhhhhhc
Q 000832 411 VEGCCRILHLFWEL-IP--SATITKIITK-IFDDNSHDLC---NEVRLATVNGIIYLLGNPLS--HEVLKVLLPRLGHLM 481 (1263)
Q Consensus 411 A~gVcriLskfWEi-IP--~~~I~slL~~-If~~LAkDsQ---DSVRlaVVeGLiaLLkn~~S--he~Lk~LLP~LksLI 481 (1263)
-..+-..+..-+.. -. .....+++.. |+..+..-.. ..+|...++.+..+++.... -..++.++|.+...+
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l 274 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQIL 274 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 66433333322211 11 1233344444 6666666555 77888888988888887554 345566889988887
Q ss_pred CCC
Q 000832 482 QDN 484 (1263)
Q Consensus 482 ~Dk 484 (1263)
.|+
T Consensus 275 ~np 277 (282)
T PF10521_consen 275 ENP 277 (282)
T ss_pred cCC
Confidence 775
No 177
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=25.78 E-value=7.3e+02 Score=32.50 Aligned_cols=148 Identities=22% Similarity=0.236 Sum_probs=100.5
Q ss_pred HhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHH------------------------HHHHhhhcCC-CChH
Q 000832 351 RSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQ------------------------FFLLEKLLTD-DCPD 405 (1263)
Q Consensus 351 RLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQ------------------------F~~L~~LL~D-DtPM 405 (1263)
.++++-|=..|.||+.-|.-+-..++|.. ..+..|+++ |.-+-.|+.| .||.
T Consensus 737 d~Lks~nKeiRR~A~~tfG~Is~aiGPqd---vL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe 813 (975)
T COG5181 737 DSLKSWNKEIRRNATETFGCISRAIGPQD---VLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPE 813 (975)
T ss_pred HHHHHhhHHHHHhhhhhhhhHHhhcCHHH---HHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCch
Confidence 46778899999999999998888887742 334444331 2224445555 4665
Q ss_pred HHHHHHhhhhHHHHHHHhhCCh---hHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCC---chHHHHhHHHhhhh
Q 000832 406 VRVVAVEGCCRILHLFWELIPS---ATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPL---SHEVLKVLLPRLGH 479 (1263)
Q Consensus 406 VRRAAA~gVcriLskfWEiIP~---~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~---She~Lk~LLP~Lks 479 (1263)
--.+ .|+.+.+.-++|-+-. +.+- .|+|++.+-..|.-..-|-.+...+.-|.=|.. ..+..-|||..|..
T Consensus 814 ~nVQ--nGvLkam~fmFeyig~~s~dYvy-~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwp 890 (975)
T COG5181 814 ANVQ--NGVLKAMCFMFEYIGQASLDYVY-SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWP 890 (975)
T ss_pred hHHH--HhHHHHHHHHHHHHHHHHHHHHH-HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhh
Confidence 3322 4455666666666542 2332 367888887778777778777777776664433 25677788888888
Q ss_pred hcCCCchHHHHHHHHHHHHhhcccC
Q 000832 480 LMQDNVLSVRLAMADLLLLLRDIRT 504 (1263)
Q Consensus 480 LI~DkSWRVRyAfADLLleLk~irg 504 (1263)
-|-|+|+-|--+|-+-+..++.+.|
T Consensus 891 NIle~sPhvi~~~~Eg~e~~~~~lg 915 (975)
T COG5181 891 NILEPSPHVIQSFDEGMESFATVLG 915 (975)
T ss_pred hccCCCcHHHHHHHHHHHHHHHHhc
Confidence 8999999999999988777665544
No 178
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=25.21 E-value=4.9e+02 Score=27.56 Aligned_cols=62 Identities=19% Similarity=0.152 Sum_probs=45.3
Q ss_pred hccCCC-chHHHHHHHHHHHhhC--CCCchHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhcc
Q 000832 441 NSHDLC-NEVRLATVNGIIYLLG--NPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDI 502 (1263)
Q Consensus 441 LAkDsQ-DSVRlaVVeGLiaLLk--n~~She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~i 502 (1263)
..+|.+ .+=+-.+++++..|.+ ...+-+.+.+++|.+.+.+..-..+.|-.+...|..|-.+
T Consensus 94 iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 94 ILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345654 4555578888888884 3445778888999999998877778888888887766543
No 179
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=24.83 E-value=1.2e+03 Score=27.38 Aligned_cols=221 Identities=17% Similarity=0.168 Sum_probs=124.7
Q ss_pred HHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHH----HHhhhcCC-----CC-----
Q 000832 338 EKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFF----LLEKLLTD-----DC----- 403 (1263)
Q Consensus 338 demL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~----~L~~LL~D-----Dt----- 403 (1263)
-+.|.+-+...|.|.+.+........+-.|+..+-...+... -.++-+.|+ .|.+|+.- +.
T Consensus 50 ~~~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~-----a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~ 124 (330)
T PF11707_consen 50 IRSILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGAL-----AREVLRSFDFSLKSLPKLLTPRKKEKEKDSESS 124 (330)
T ss_pred HHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHH-----HHHHHHhcCCchhhHHHHhcccccccccccccc
Confidence 344444469999999999987766777777777644333221 234444442 34455411 11
Q ss_pred ---hHHHHHHHhhhhHHHHHHHhhCChhHHHHHH------HHHHHHhccCCCchHHHHHHHHHHH-hhCCCCchHHHH--
Q 000832 404 ---PDVRVVAVEGCCRILHLFWELIPSATITKII------TKIFDDNSHDLCNEVRLATVNGIIY-LLGNPLSHEVLK-- 471 (1263)
Q Consensus 404 ---PMVRRAAA~gVcriLskfWEiIP~~~I~slL------~~If~~LAkDsQDSVRlaVVeGLia-LLkn~~She~Lk-- 471 (1263)
|.||.+++.-+...| ...++....++| ..++..|..|+ .++=..+++.+.. +++...-....+
T Consensus 125 ~~~~siR~~fI~F~Lsfl----~~~~~~~~~~lL~~~~~~~~l~k~l~~D~-~~~v~~iL~~l~~~Vl~~~~v~r~~K~~ 199 (330)
T PF11707_consen 125 KSKPSIRTNFIRFWLSFL----SSGDPELKRDLLSQKKLMSALFKGLRKDP-PETVILILETLKDKVLKDSSVSRSTKCK 199 (330)
T ss_pred ccCcCHHHHHHHHHHHHH----ccCCHHHHHHHHHcCchHHHHHhcccCCC-HHHHHHHHHHHHHHhccCCCCChhhhhh
Confidence 599999998643333 345666666665 45777777744 4454557777763 555443222221
Q ss_pred ----hHHHhhhhhcCCCch----HHHHHHHHHHHHhhcccC--Cceeee--cChHH-HHHHHhc--CchHH-HHHHHHHh
Q 000832 472 ----VLLPRLGHLMQDNVL----SVRLAMADLLLLLRDIRT--FQFNKV--VGLDI-LLSALAN--DQSQV-AQKITRLL 535 (1263)
Q Consensus 472 ----~LLP~LksLI~DkSW----RVRyAfADLLleLk~irg--iKF~~V--V~~D~-LLaRLa~--Ds~~V-~k~IvkLL 535 (1263)
..|-.|..+...... .||-.+-+.|..++...+ +-|.+- -+.+- --.-... ...++ .+.+..+|
T Consensus 200 ~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll 279 (330)
T PF11707_consen 200 LFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLL 279 (330)
T ss_pred hcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHH
Confidence 244455555555555 999999999999985432 223221 00000 0000001 11234 34445555
Q ss_pred cccCCCCCCChHHHhHHHHHHHhcChHHHHHHHHHH
Q 000832 536 MPSYFPLKVNIKEACSRCVTIVKRSPVAGARFCEFA 571 (1263)
Q Consensus 536 ipSfFP~k~s~~E~~~RCi~Lik~nP~Aa~~Fy~~a 571 (1263)
. .+-|.... -+.+=.+..++.+|.=.+.|+...
T Consensus 280 ~-~lkp~e~~--~q~~Lvl~Il~~~PeLva~Y~~~~ 312 (330)
T PF11707_consen 280 K-KLKPWEDD--RQQELVLKILKACPELVAPYFNNL 312 (330)
T ss_pred H-HCCCCccH--HHHHHHHHHHHHChHHHHHHHHhh
Confidence 4 55555422 455556899999998888888776
No 180
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=24.71 E-value=2.8e+02 Score=28.68 Aligned_cols=84 Identities=12% Similarity=0.140 Sum_probs=52.0
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHhhCCCCc-hHHHH--hHHHhhhhhcCCCchHHHHHH
Q 000832 417 ILHLFWELIPSATITKIITKIFDDNSHDL-CNEVRLATVNGIIYLLGNPLS-HEVLK--VLLPRLGHLMQDNVLSVRLAM 492 (1263)
Q Consensus 417 iLskfWEiIP~~~I~slL~~If~~LAkDs-QDSVRlaVVeGLiaLLkn~~S-he~Lk--~LLP~LksLI~DkSWRVRyAf 492 (1263)
++..|-+.=.-..+.+.|..+...-.... ...+-..++.|+.+|+.+..- ..++. ..++.|...+..++.++|..+
T Consensus 99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~ 178 (187)
T PF06371_consen 99 WVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLA 178 (187)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHH
Confidence 45555554223444444555444444442 235667778888888886432 22332 267888888999999999999
Q ss_pred HHHHHHhh
Q 000832 493 ADLLLLLR 500 (1263)
Q Consensus 493 ADLLleLk 500 (1263)
.++|..++
T Consensus 179 leiL~~lc 186 (187)
T PF06371_consen 179 LEILAALC 186 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998775
No 181
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=24.30 E-value=1.1e+03 Score=27.00 Aligned_cols=78 Identities=18% Similarity=0.309 Sum_probs=49.0
Q ss_pred hhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHH----
Q 000832 344 LTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILH---- 419 (1263)
Q Consensus 344 LY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLs---- 419 (1263)
.|.|++. +++.....+..-|+.+++.+....+... ....+..+...|..+.+.++.+...+...|+..+...|.
T Consensus 106 ~~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~-~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~ 183 (312)
T PF03224_consen 106 PYSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRS-EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY 183 (312)
T ss_dssp -HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH
T ss_pred hHHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh
Confidence 7899997 7777777788888888888877765532 222246677777788887777778788888876655554
Q ss_pred --HHHh
Q 000832 420 --LFWE 423 (1263)
Q Consensus 420 --kfWE 423 (1263)
.||+
T Consensus 184 R~~f~~ 189 (312)
T PF03224_consen 184 RQVFWK 189 (312)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 4777
No 182
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=23.78 E-value=2.6e+02 Score=34.67 Aligned_cols=126 Identities=17% Similarity=0.242 Sum_probs=77.7
Q ss_pred hHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcC-CCchHHHHHHH
Q 000832 415 CRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQ-DNVLSVRLAMA 493 (1263)
Q Consensus 415 criLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~-DkSWRVRyAfA 493 (1263)
..++..++.-|....+.++|.+|+. .|. ..-+-.+++ .+.. +.++|.+..++. ..++-+-.+++
T Consensus 20 ~~~v~~llkHI~~~~ImDlLLklIs---~d~-~~~~~~ile----wL~~-------q~LI~~Li~~L~p~~~~~~q~naa 84 (475)
T PF04499_consen 20 PNFVDNLLKHIDTPAIMDLLLKLIS---TDK-PESPTGILE----WLAE-------QNLIPRLIDLLSPSYSSDVQSNAA 84 (475)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHc---cCc-ccchHHHHH----HHHH-------hCHHHHHHHHhCCCCCHHHHHHHH
Confidence 3467788888888899999988887 343 112222222 2211 346666665554 66888999999
Q ss_pred HHHHHhhcccC-Cce--eeecChHHHHHHHhcCchHHHHHHHHHhcccCCC--CCCChHHHhHHHHHHHhcCh
Q 000832 494 DLLLLLRDIRT-FQF--NKVVGLDILLSALANDQSQVAQKITRLLMPSYFP--LKVNIKEACSRCVTIVKRSP 561 (1263)
Q Consensus 494 DLLleLk~irg-iKF--~~VV~~D~LLaRLa~Ds~~V~k~IvkLLipSfFP--~k~s~~E~~~RCi~Lik~nP 561 (1263)
+.|-+|..+.. ... ...++++.|+..|+.+ .+++.|+...|. .+.+.--.+.=++.||++|.
T Consensus 85 ~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~------~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknn 151 (475)
T PF04499_consen 85 DFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSE------ETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNN 151 (475)
T ss_pred HHHHHHHHHhhccccccccCCCccHHHHHHhCh------HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcc
Confidence 99888765543 222 4668899999998765 334444444442 23333344455677776664
No 183
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=23.38 E-value=4.2e+02 Score=34.37 Aligned_cols=136 Identities=18% Similarity=0.051 Sum_probs=86.5
Q ss_pred hHHHHHHHHHhHhhcCCCC---CccchHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHH
Q 000832 358 SNVRQNALHLLLDLFPLED---PDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKII 434 (1263)
Q Consensus 358 ftVR~SA~~LF~~AFPlvd---pd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL 434 (1263)
-.++.+||-.|..+=-.++ .+.. +... -.-|.+++.|+.-||-.++...+|.+.=+|-..=..-.....+
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~----~~dv---~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngI 463 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLK----RNDV---AQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGI 463 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCc----cchh---HHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcH
Confidence 4667888877775533332 1111 1111 2335788899999999998887887776665443322222233
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHH---HHhHH-HhhhhhcCCCchHHHHHHHHHHHHhhc
Q 000832 435 TKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEV---LKVLL-PRLGHLMQDNVLSVRLAMADLLLLLRD 501 (1263)
Q Consensus 435 ~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~---Lk~LL-P~LksLI~DkSWRVRyAfADLLleLk~ 501 (1263)
..+..+..|--..+|..++..|.-+.-|-..... ++.+. ..|..+++|+.|-|---+.+++..+..
T Consensus 464 -d~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 464 -DILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred -HHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 3445566777788999999988888766433221 11122 345668999999999999999877653
No 184
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=23.06 E-value=3.9e+02 Score=28.12 Aligned_cols=102 Identities=20% Similarity=0.175 Sum_probs=61.7
Q ss_pred hhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCC----CchHHHHHHHHHHHhhCCC---CchHH
Q 000832 397 KLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDL----CNEVRLATVNGIIYLLGNP---LSHEV 469 (1263)
Q Consensus 397 ~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~slL~~If~~LAkDs----QDSVRlaVVeGLiaLLkn~---~She~ 469 (1263)
.++...+|.++++..+..+.++..=|.....+...++-...++++..-. ...+=...-+.|-.+-.+. .-++.
T Consensus 36 ~~i~~~~~~~~~~~le~y~ei~~~aWk~a~~~~~~~~e~~~iq~~~~~a~~~~~~~~~~~~R~~L~~f~~~k~~~~v~~m 115 (152)
T PF12422_consen 36 KLIKCQIPQVSKSVLELYGEILFRAWKKASKDKLEEIEEVCIQDLMEAAIHLEYLPLHSKFREVLLSFHSQKKRKGVDEM 115 (152)
T ss_pred HHHHHHcccccHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHhHHhcchHhHHHHHHHHHHHHhcccccchHHH
Confidence 3333344999999999999999999998866555554444444443222 1111111123334444333 11222
Q ss_pred H-HhHHHhhhhhcCCCchHHHHHHHHHHHH
Q 000832 470 L-KVLLPRLGHLMQDNVLSVRLAMADLLLL 498 (1263)
Q Consensus 470 L-k~LLP~LksLI~DkSWRVRyAfADLLle 498 (1263)
+ +-.=|.|-+.++-+++.||...+.+|.+
T Consensus 116 L~rl~~PiL~r~L~~~n~~Vr~na~~l~~~ 145 (152)
T PF12422_consen 116 LLRLYEPILWRALQAANAKVRSNAAALFLD 145 (152)
T ss_pred HHHHHHHHHHHHHcCCCcchhccHHHHHHH
Confidence 2 2233888889999999999999998776
No 185
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.46 E-value=5e+02 Score=36.44 Aligned_cols=204 Identities=12% Similarity=0.211 Sum_probs=116.4
Q ss_pred HhhhcccchhhHHHHHHhHHHHHHHHhh-ccC---CHHH---HHHHHHHHhhHhhcCC-------C--cchH--------
Q 000832 283 YRAWKGVEEGFREDVESGFLQVLIEGAI-HAS---SRAF---AASIRRVLGGFVNQRT-------T--PGVE-------- 338 (1263)
Q Consensus 283 FrAWK~A~gd~~eeIE~~cIQdLm~~AI-ha~---s~~l---AaklR~VLs~FHsqK~-------~--kgVd-------- 338 (1263)
|..-|--..|++..|-.+||-++|..-. +.. +-.+ |--+-=-++-|..+|. . .+|+
T Consensus 907 f~~lrlIssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~ 986 (1610)
T KOG1848|consen 907 FSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKS 986 (1610)
T ss_pred hhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccc
Confidence 4555666789999999999999998765 221 0000 1011112233333211 0 1111
Q ss_pred -----HHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCc------------------------cchHHHHHHHH
Q 000832 339 -----KMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPD------------------------ATKEVKDTLFD 389 (1263)
Q Consensus 339 -----emL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd------------------------~~rEe~d~EL~ 389 (1263)
+-+-=+..-.|..+-..+|+.||.+||-.|.-.|.-.+.- ...|..-++++
T Consensus 987 ~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiq 1066 (1610)
T KOG1848|consen 987 KEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQ 1066 (1610)
T ss_pred hhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHh
Confidence 2222233345667888999999999998887666533221 12333444555
Q ss_pred HHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHhhCC----hhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCC--
Q 000832 390 KQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIP----SATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGN-- 463 (1263)
Q Consensus 390 kQF~~L~~LL~DDtPMVRRAAA~gVcriLskfWEiIP----~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn-- 463 (1263)
+|. ++|--+-. .|+.++.+.+...+- -...|+.+....+.++.|.+..+.++++.++..++..
T Consensus 1067 kqw--------tet~~lti---sgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii 1135 (1610)
T KOG1848|consen 1067 KQW--------TETSCLTI---SGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSII 1135 (1610)
T ss_pred hhh--------hhhhhhhH---HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHh
Confidence 555 23333333 333334444433322 2356777888899999999999999999999887642
Q ss_pred ----CC--chHHHHhHH-------HhhhhhcCCCchHHHHHHHHHHH
Q 000832 464 ----PL--SHEVLKVLL-------PRLGHLMQDNVLSVRLAMADLLL 497 (1263)
Q Consensus 464 ----~~--She~Lk~LL-------P~LksLI~DkSWRVRyAfADLLl 497 (1263)
.+ .+...+-++ |.+...-.+.+|+|-+-....|.
T Consensus 1136 ~~~~ln~~~~~k~n~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl~ 1182 (1610)
T KOG1848|consen 1136 EFGKLNATFTLKINLVFINYGRFCEVSSSASERTLAKVSQEILTGLI 1182 (1610)
T ss_pred hhccccchHHHHhhhhhhhHhhhcccccccchhHHHHHHHHHHhhhH
Confidence 22 233333333 33333445777888877777665
No 186
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.39 E-value=1.1e+03 Score=33.70 Aligned_cols=120 Identities=19% Similarity=0.149 Sum_probs=71.9
Q ss_pred hhhcCCCChHHHHHHHhhhhHHHHHHHhhCChhHHHH---HHHHHHHHhccCCCchHHH-----HHHHHHHHhhCCCCc-
Q 000832 396 EKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITK---IITKIFDDNSHDLCNEVRL-----ATVNGIIYLLGNPLS- 466 (1263)
Q Consensus 396 ~~LL~DDtPMVRRAAA~gVcriLskfWEiIP~~~I~s---lL~~If~~LAkDsQDSVRl-----aVVeGLiaLLkn~~S- 466 (1263)
..++.|.-+.||..|.+..-.++..+|+.+.++.-.. .+-|||+.+..|...++|- -.+.++..+.+....
T Consensus 1180 s~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~ 1259 (1514)
T KOG0929|consen 1180 SKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQF 1259 (1514)
T ss_pred hHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566799999999999999999999999998754333 5568888888887544332 123344444332211
Q ss_pred hHHHHhHHHhhhh----hcCCCchHHHHHHHHHHHHhhcccCCceeeecChHHH
Q 000832 467 HEVLKVLLPRLGH----LMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDIL 516 (1263)
Q Consensus 467 he~Lk~LLP~Lks----LI~DkSWRVRyAfADLLleLk~irgiKF~~VV~~D~L 516 (1263)
-+.+..+||.+.. ++.-...-+=-.-...|..+...-|.+|.+. .-|++
T Consensus 1260 ~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~-~Wde~ 1312 (1514)
T KOG0929|consen 1260 FKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEE-DWDEI 1312 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHh-hHHHH
Confidence 2333345554443 4443333333333445556666667777665 44444
No 187
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=22.27 E-value=1.9e+03 Score=28.99 Aligned_cols=187 Identities=18% Similarity=0.169 Sum_probs=115.0
Q ss_pred HHHhHHHHHHHHhhccCCHHHHHHHHHHHhhHhhcCCCcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCC
Q 000832 297 VESGFLQVLIEGAIHASSRAFAASIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLED 376 (1263)
Q Consensus 297 IE~~cIQdLm~~AIha~s~~lAaklR~VLs~FHsqK~~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvd 376 (1263)
.|.+.|+.||..|++...|-+.+-+|.+=. | +.....++..+..|++.-....++...-+-+.|.+.-.-.- +
T Consensus 450 ~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~--h----~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~-~ 522 (708)
T PF05804_consen 450 CEGNGLQSLMKRALKTRDPLLLKLIRNISQ--H----DGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIP-D 522 (708)
T ss_pred HhcCcHHHHHHHHHhcccHHHHHHHHHHHh--c----CchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC-C
Confidence 345669999999999988877887777732 2 12456677788888888888888888888888888765321 1
Q ss_pred CccchHHHHHHHHH--HHHHHhhhcCCC--ChHHHHHHHhhhhHHHHHHHhh-CChhHHH--HHHHHHHHHhccCCC--c
Q 000832 377 PDATKEVKDTLFDK--QFFLLEKLLTDD--CPDVRVVAVEGCCRILHLFWEL-IPSATIT--KIITKIFDDNSHDLC--N 447 (1263)
Q Consensus 377 pd~~rEe~d~EL~k--QF~~L~~LL~DD--tPMVRRAAA~gVcriLskfWEi-IP~~~I~--slL~~If~~LAkDsQ--D 447 (1263)
.+ ....+++ ....+.+++... .+.+--.++. +++...-- -.+..+. .++..++. |-+..| |
T Consensus 523 ld-----~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi----~~gtla~d~~~A~lL~~sgli~~Li~-LL~~kqeDd 592 (708)
T PF05804_consen 523 LD-----WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI----LLGTLASDPECAPLLAKSGLIPTLIE-LLNAKQEDD 592 (708)
T ss_pred cC-----HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH----HHHHHHCCHHHHHHHHhCChHHHHHH-HHHhhCchH
Confidence 11 2333432 345567776543 2334444443 23322110 0011111 12222222 334444 5
Q ss_pred hHHHHHHHHHHHhhCCCCchHHH-H--hHHHhhhhhcCCCchHHHHHHHHHHHHhh
Q 000832 448 EVRLATVNGIIYLLGNPLSHEVL-K--VLLPRLGHLMQDNVLSVRLAMADLLLLLR 500 (1263)
Q Consensus 448 SVRlaVVeGLiaLLkn~~She~L-k--~LLP~LksLI~DkSWRVRyAfADLLleLk 500 (1263)
..-++++-++..++......+.+ + .+...+-.++||++..||.++-..|.-|+
T Consensus 593 E~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 593 EIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 67788888888888876655444 2 36778889999999999998777765555
No 188
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=21.70 E-value=4.4e+02 Score=25.80 Aligned_cols=69 Identities=17% Similarity=0.073 Sum_probs=56.1
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHhhCCCC-chHHHHhHHHhhhhhcCCCchHHHHHHHHHHHHhhccc
Q 000832 434 ITKIFDDNSHDLCNEVRLATVNGIIYLLGNPL-SHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLRDIR 503 (1263)
Q Consensus 434 L~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~-She~Lk~LLP~LksLI~DkSWRVRyAfADLLleLk~ir 503 (1263)
+..++..+ +|...-||...+..+..++.... .-.....++..+...++|+..=|=+++++.|..+++..
T Consensus 5 ~~~al~~L-~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 5 LQEALSDL-NDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHc-cCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 34455555 67778899999999999998877 55566778999999999999999999999988887543
Done!