Query 000832
Match_columns 1263
No_of_seqs 150 out of 222
Neff 3.5
Searched_HMMs 29240
Date Tue Mar 26 17:49:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000832.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_600-604//hhsearch_pdb/000832hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 1.0 1 1 112.8 32.2 185 339-535 121-305 (588)
2 1b3u_A Protein (protein phosph 1.0 1 1 92.9 30.8 26 474-499 283-308 (588)
3 4fdd_A Transportin-1; heat rep 1.0 1 1 84.3 25.9 155 343-504 173-353 (852)
4 1qgr_A Protein (importin beta 1.0 1 1 76.6 35.4 155 343-503 216-397 (876)
5 2bpt_A Importin beta-1 subunit 1.0 1 1 74.2 33.8 153 343-501 223-398 (861)
6 1ibr_B P95, importin beta-1 su 1.0 1 1 74.2 21.7 155 343-502 216-396 (462)
7 2qk2_A LP04448P; mini spindles 1.0 1 1 72.0 12.9 148 346-506 58-210 (242)
8 1u6g_C TIP120 protein, CAND1; 1.0 1 1 71.6 23.8 99 1138-1246 1080-1179(1230)
9 4fdd_A Transportin-1; heat rep 1.0 1 1 66.2 36.8 274 214-504 83-391 (852)
10 2qk2_A LP04448P; mini spindles 1.0 1 1 66.0 15.5 174 344-535 15-200 (242)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=112.76 Aligned_cols=185 Identities=18% Similarity=0.183 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 77888649999875169865789879997585258999731137789999999999953307997379999996335878
Q 000832 339 KMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRIL 418 (1263)
Q Consensus 339 emL~rLY~PILwRLLka~NftVR~SAa~LF~~aFPlvdpd~tkEe~d~EL~KQF~~L~~LL~DDtPMVRRAAA~gVcrIL 418 (1263)
+.+...+.|++.++.+.+|+.+|..|+.++..+++..++. ....+ +..+..++.|+.|+||++|+. .+
T Consensus 121 ~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~-----~~~~l---~~~l~~l~~d~~~~VR~~a~~----~l 188 (588)
T 1b3u_A 121 SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA-----VKAEL---RQYFRNLCSDDTPMVRRAAAS----KL 188 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH-----HHHHH---HHHHHHHHTCSCHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHH-----HHHHH---HHHHHHHHCCCCHHHHHHHHH----HH
T ss_conf 9999999999999850777179999999999999856999-----99999---999999848997889999999----89
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 89772078358999999999873267874178998998999528998467898278866432379864899999999998
Q 000832 419 HLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLL 498 (1263)
Q Consensus 419 skfWEiIP~~~I~slL~kIi~~LAkDsQDSVRlaVVeGLiaLLkn~~SheiLk~LLP~LksLI~DkSWRVRyAvADLLle 498 (1263)
+.+.+.++.+.....+.+++..+..|+.+.||..+++++..+.+..........++|.+..++.|++|+||.+++..|..
T Consensus 189 ~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~ 268 (588)
T 1b3u_A 189 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTE 268 (588)
T ss_dssp HHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999816776799999999988249928899989999999998579888887899999998069977899999999999
Q ss_pred HHCCCCCCEEEECCHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 6300297200102957999998107549999999974
Q 000832 499 LRDIRTFQFNKVVGLDILLSALANDQSQVAQKITRLL 535 (1263)
Q Consensus 499 Lk~irgiKF~~VV~~D~LLaRLa~Ds~~Vak~IvkLL 535 (1263)
+....+.....---+..++..+.++.+.||+...+-|
T Consensus 269 l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 305 (588)
T 1b3u_A 269 LQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305 (588)
T ss_dssp HHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9998195210558999999985899589999999879
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=92.92 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=8.4
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 88664323798648999999999986
Q 000832 474 LPRLGHLMQDNVLSVRLAMADLLLLL 499 (1263)
Q Consensus 474 LP~LksLI~DkSWRVRyAvADLLleL 499 (1263)
+|.+..+++|..|.||.+++..|..+
T Consensus 283 ~~~l~~~l~d~~~~vr~~a~~~l~~~ 308 (588)
T 1b3u_A 283 VPAFQNLMKDCEAEVRAAASHKVKEF 308 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999985899589999999879999
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=84.31 Aligned_cols=155 Identities=19% Similarity=0.224 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 86499998751698657898799975852589997311377899999999999533079973799999963358788977
Q 000832 343 NLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFW 422 (1263)
Q Consensus 343 rLY~PILwRLLka~NftVR~SAa~LF~~aFPlvdpd~tkEe~d~EL~KQF~~L~~LL~DDtPMVRRAAA~gVcrILskfW 422 (1263)
....|.+.++++.++..||..|+..+..+....+. . ....+......+..++.|+.+.||+.|+..+..+...+-
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~-~----~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~ 247 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ-A----LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM 247 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH-H----HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCH-H----HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCH
T ss_conf 99999999985679789999999999999864638-7----998899999999987179977899999999999998577
Q ss_pred HHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHH----HHHHHHHHHHHHC-----------CC----
Q ss_conf 2078358999999999873267874178998998999528998467----8982788664323-----------79----
Q 000832 423 ELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHE----VLKVLLPRLGHLM-----------QD---- 483 (1263)
Q Consensus 423 EiIP~~~I~slL~kIi~~LAkDsQDSVRlaVVeGLiaLLkn~~She----iLk~LLP~LksLI-----------~D---- 483 (1263)
+.+.+ ....++ +.+-.+..|..+.||..+++.+..+.+.....+ .+..++|.+...+ .|
T Consensus 248 ~~~~~-~l~~l~-~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed 325 (852)
T 4fdd_A 248 DRLLP-HMHNIV-EYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGG 325 (852)
T ss_dssp HHHGG-GHHHHH-HHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----
T ss_pred HHHHH-HHHHHH-HHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
T ss_conf 98998-899999-9999870699689999999999998603657988788898899999987578676799866984432
Q ss_pred -------CCHHHHHHHHHHHHHHHCCCC
Q ss_conf -------864899999999998630029
Q 000832 484 -------NVLSVRLAMADLLLLLRDIRT 504 (1263)
Q Consensus 484 -------kSWRVRyAvADLLleLk~irg 504 (1263)
.+|+||.+++..+..+....+
T Consensus 326 ~~~dd~~~~~~vr~~a~~~L~~la~~~~ 353 (852)
T 4fdd_A 326 SGGDDTISDWNLRKCSAAALDVLANVYR 353 (852)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 2245640111699999999999987461
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=76.61 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 86499998751698657898799975852589997311377899999-99999953307997379999996335878897
Q 000832 343 NLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFD-KQFFLLEKLLTDDCPDVRVVAVEGCCRILHLF 421 (1263)
Q Consensus 343 rLY~PILwRLLka~NftVR~SAa~LF~~aFPlvdpd~tkEe~d~EL~-KQF~~L~~LL~DDtPMVRRAAA~gVcrILskf 421 (1263)
..+.+.+.++++..+..+|..|+..+......... .. ...+. ..+..+...+.|+.+.||..|..-...+....
T Consensus 216 ~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~ 290 (876)
T 1qgr_A 216 HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ-YM----ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE 290 (876)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG-GC----HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999871799889999999999999998699-99----98877899999999963873499999999999998878
Q ss_pred HHH---------------CC-----HHHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 720---------------78-----35899999999987326------78741789989989995289984678982788
Q 000832 422 WEL---------------IP-----SATITKIITKIFDDNSH------DLCNEVRLATVNGIIYLLGNPLSHEVLKVLLP 475 (1263)
Q Consensus 422 WEi---------------IP-----~~~I~slL~kIi~~LAk------DsQDSVRlaVVeGLiaLLkn~~SheiLk~LLP 475 (1263)
.+. .+ ......++..++..+.. |+...||.++..++..+..... ...+..++|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~l~ 369 (876)
T 1qgr_A 291 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLP 369 (876)
T ss_dssp HHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-GGGHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHH
T ss_conf 7676651001124777542018999998988707999875313344454521799999999999998775-866999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 6643237986489999999999863002
Q 000832 476 RLGHLMQDNVLSVRLAMADLLLLLRDIR 503 (1263)
Q Consensus 476 ~LksLI~DkSWRVRyAvADLLleLk~ir 503 (1263)
.+...+.|.+|+||.+++..+..+....
T Consensus 370 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~ 397 (876)
T 1qgr_A 370 FIKEHIKNPDWRYRDAAVMAFGCILEGP 397 (876)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9998846998289999999999997488
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=74.25 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 86499998751698657898799975852589997311377899999-99999953307997379999996335878897
Q 000832 343 NLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFD-KQFFLLEKLLTDDCPDVRVVAVEGCCRILHLF 421 (1263)
Q Consensus 343 rLY~PILwRLLka~NftVR~SAa~LF~~aFPlvdpd~tkEe~d~EL~-KQF~~L~~LL~DDtPMVRRAAA~gVcrILskf 421 (1263)
..+.+.+.+.++..++.+|..|+..+.......+. .. ...+. ..+..+...+.|+.+.||..|+..+..+....
T Consensus 223 ~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~----~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~ 297 (861)
T 2bpt_A 223 NYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT-FM----KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE 297 (861)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG-GC----HHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999986599889999999999999999889-99----99889999999999873772789999999999999878
Q ss_pred HH------------H-CC---HHHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 72------------0-78---35899999999987326------787417899899899952899846789827886643
Q 000832 422 WE------------L-IP---SATITKIITKIFDDNSH------DLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGH 479 (1263)
Q Consensus 422 WE------------i-IP---~~~I~slL~kIi~~LAk------DsQDSVRlaVVeGLiaLLkn~~SheiLk~LLP~Lks 479 (1263)
-. . .+ ......++..++..+.. |+...||..+..++..+..... ...+..++|.+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~ 376 (861)
T 2bpt_A 298 IDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQ 376 (861)
T ss_dssp HHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_conf 864333210357732569999999988999999998706653012468689999999999998740-8689999999998
Q ss_pred HCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 2379864899999999998630
Q 000832 480 LMQDNVLSVRLAMADLLLLLRD 501 (1263)
Q Consensus 480 LI~DkSWRVRyAvADLLleLk~ 501 (1263)
.+.|.+|++|.+++..+..+.+
T Consensus 377 ~l~~~~~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 377 NITADNWRNREAAVMAFGSIMD 398 (861)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSS
T ss_pred HCCCCCHHHHHHHHHHHHHHHC
T ss_conf 7579972699999999999985
No 6
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=74.20 Aligned_cols=155 Identities=13% Similarity=0.090 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 86499998751698657898799975852589997311377899999999999533079973799999963358788977
Q 000832 343 NLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFW 422 (1263)
Q Consensus 343 rLY~PILwRLLka~NftVR~SAa~LF~~aFPlvdpd~tkEe~d~EL~KQF~~L~~LL~DDtPMVRRAAA~gVcrILskfW 422 (1263)
.+..|.+.++++..+..+|..++..|......... ..+..... ..+..+...+.|+.+.||..|...+..+...-+
T Consensus 216 ~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~-~~~~~~~~---~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~ 291 (462)
T 1ibr_B 216 HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ-YMETYMGP---ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM 291 (462)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG-GCTTTTTT---THHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999853799789999999999999999899-99988888---999999999828860999999999999999888
Q ss_pred HH----------------CCHH----HHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 20----------------7835----899999999987326------787417899899899952899846789827886
Q 000832 423 EL----------------IPSA----TITKIITKIFDDNSH------DLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPR 476 (1263)
Q Consensus 423 Ei----------------IP~~----~I~slL~kIi~~LAk------DsQDSVRlaVVeGLiaLLkn~~SheiLk~LLP~ 476 (1263)
+. .... ....++..++..+.. |+...||.++..++..+..... ...+..++|.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~ 370 (462)
T 1ibr_B 292 DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPF 370 (462)
T ss_dssp HHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHH
T ss_conf 788760100003788630359999987664007999998744444444433288999999999998635-8789999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 64323798648999999999986300
Q 000832 477 LGHLMQDNVLSVRLAMADLLLLLRDI 502 (1263)
Q Consensus 477 LksLI~DkSWRVRyAvADLLleLk~i 502 (1263)
+...++|.+|+||.+++..|..+.+.
T Consensus 371 l~~~l~~~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 371 IKEHIKNPDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99984389758999999999998648
No 7
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=71.98 Aligned_cols=148 Identities=15% Similarity=0.043 Sum_probs=90.3
Q ss_pred HHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998751-69865789879997585258999731137789999999999953307997379999996335878897720
Q 000832 346 EPVMFRSL-QAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWEL 424 (1263)
Q Consensus 346 ~PILwRLL-ka~NftVR~SAa~LF~~aFPlvdpd~tkEe~d~EL~KQF~~L~~LL~DDtPMVRRAAA~gVcrILskfWEi 424 (1263)
.+.+.+.+ +..|..||..|+..+..+.....+.. ...+...+..+.+.+.|..+.||.+|+. .|..+++.
T Consensus 58 ~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~-----~~~~~~ilp~ll~~l~d~~~~vr~~a~~----aL~~~~~~ 128 (242)
T 2qk2_A 58 VSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF-----SNYASACVPSLLEKFKEKKPNVVTALRE----AIDAIYAS 128 (242)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG-----HHHHHHHHHHHHHGGGCCCHHHHHHHHH----HHHHHHTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCCHHHHHHHHH----HHHHHHHC
T ss_conf 99999984568989999999999999999986617-----9899999999999976898899999999----99999972
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 78358999999999873267874178998998999528998----46789827886643237986489999999999863
Q 000832 425 IPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPL----SHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLLLR 500 (1263)
Q Consensus 425 IP~~~I~slL~kIi~~LAkDsQDSVRlaVVeGLiaLLkn~~----SheiLk~LLP~LksLI~DkSWRVRyAvADLLleLk 500 (1263)
.+. ..++..+.. ...|....||..++..+..++.... ....+..++|.+..+++|+.|+||-++.+.+..+.
T Consensus 129 ~~~---~~ll~~l~~-~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 129 TSL---EAQQESIVE-SLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp SCH---HHHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CCH---HHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 899---999999999-8848983999999999999998718877668999999999998846998589999999999999
Q ss_pred CCCCCC
Q ss_conf 002972
Q 000832 501 DIRTFQ 506 (1263)
Q Consensus 501 ~irgiK 506 (1263)
.+.+.+
T Consensus 205 ~~vg~~ 210 (242)
T 2qk2_A 205 KLMGDK 210 (242)
T ss_dssp HHHCHH
T ss_pred HHCCHH
T ss_conf 984999
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=71.61 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCHHHHH
Q ss_conf 25799999999871699841013677853100120223430125256887677621788532342100002467315888
Q 000832 1138 PEFKKFMELIIPLLKGKPCILDAVGVVFLTGSVVGLERKDFGLFLGLVHFVCVKLIGTDNREWNGLDAMLVSLPDIYPRI 1217 (1263)
Q Consensus 1138 ~~~~k~~~m~~~llk~~~~ild~v~~~~l~~~~~~l~~~d~~~~~gl~~fvc~kl~g~~~~~~~~l~~~~~sl~~~~~~i 1217 (1263)
..-|.-.|+|..++.-.+.-+| + .-|+....-||.- |++ .-.+.+-.-.||.-.... ....-++.+..-+
T Consensus 1080 ~~rk~a~~~~~~ll~~~~~~i~-~-~~~~~~~~~gl~d-~~d-i~~~~~~~l~~l~~~~~~------~~~~~~~~~~~~~ 1149 (1230)
T 1u6g_C 1080 DIRKAAFECMYTLLDSCLDRLD-I-FEFLNHVEDGLKD-HYD-IKMLTFLMLVRLSTLCPS------AVLQRLDRLVEPL 1149 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCSSSC-H-HHHHHHHHHTTSS-CHH-HHHHHHHHHHHHHHSCCH------HHHTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-H-HHHHHHHHCCCCC-HHH-HHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHH
T ss_conf 9999999999999998887478-9-9999999804676-688-999999999999840879------8999999999999
Q ss_pred HHHHHHHH-CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89877742-057889688567866667857
Q 000832 1218 EKEIEEQS-QEGERQKLLDAKVLLEPVWMH 1246 (1263)
Q Consensus 1218 ~~~~~~~~-~~~~~~~l~~a~~l~~~~~~~ 1246 (1263)
.+-+.-.. ++-..|.+|...+++|++.--
T Consensus 1150 ~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~ 1179 (1230)
T 1u6g_C 1150 RATCTTKVKANSVKQEFEKQDELKRSAMRA 1179 (1230)
T ss_dssp HHHHHCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999841146343652488999999999999
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=66.16 Aligned_cols=274 Identities=13% Similarity=0.087 Sum_probs=149.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH----------CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 898998889999999831263102745126899986----------0777899999999984203684999999857887
Q 000832 214 FDDNSIEDLKLLLIRCVISPLYLKTEDGRKFLAFLF----------GLSKPMLKDVLAMIKSQISFERKSMLEAYGDVLY 283 (1263)
Q Consensus 214 f~deS~~slk~LLLrc~~sP~FlkseEGrkFLA~lF----------gl~~~li~~ih~tIKnQLp~~~kS~le~YGEIyF 283 (1263)
++++.-..+|..+++++..+.- .=|+-++..+ .| +.++..+...+.+.=+..+...+...+.|+-
T Consensus 83 ~~~~~~~~ik~~ll~~l~~~~~----~vr~~~a~~i~~ia~~~~~~~w-p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~ 157 (852)
T 4fdd_A 83 FPNGVTDFIKSECLNNIGDSSP----LIRATVGILITTIASKGELQNW-PDLLPKLCSLLDSEDYNTCEGAFGALQKICE 157 (852)
T ss_dssp CCHHHHHHHHHHHHTTTTCSSH----HHHHHHHHHHHHHHHHTTTTTC-TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999999998749989----9999999999999986481356-8999999998709998999999999999999
Q ss_pred HHHCCCC-HHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 6533663-005-99998869999998833059978899999998667424788435877888649999875169865789
Q 000832 284 RAWKGVE-EGF-REDVESGFLQVLIEGAIHASSRAFAASIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQAANSNVR 361 (1263)
Q Consensus 284 rAWK~A~-gd~-~eeIE~~cIQdLm~~AIha~s~~lAakiR~VLs~FhsqK~~kgVdemL~rLY~PILwRLLka~NftVR 361 (1263)
.. .... .+. ...++ ..+..+.+..- -+++.+-...-..|..|..... ..... ....+.|.++++++.++..+|
T Consensus 158 ~~-~~~~~~~~~~~~~~-~il~~l~~~l~-~~~~~vR~~A~~aL~~~~~~~~-~~~~~-~~~~~l~~l~~~~~d~~~~vr 232 (852)
T 4fdd_A 158 DS-AEILDSDVLDRPLN-IMIPKFLQFFK-HSSPKIRSHAVACVNQFIISRT-QALML-HIDSFIENLFALAGDEEPEVR 232 (852)
T ss_dssp HH-TTHHHHCSSSSCHH-HHHHHHTTTTT-CSSHHHHHHHHHHHHTTTTTTC-HHHHT-SHHHHHHHHHHHHTCCCHHHH
T ss_pred HH-HHHHCHHHHCCHHH-HHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCCC-HHHHH-HHHHHHHHHHHHCCCCCHHHH
T ss_conf 85-78756343133299-99999999856-7978999999999999986463-87998-899999999987179977899
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHCCHHHHHHHHHHHHH
Q ss_conf 8799975852589997311377899999999999533079973799999963358788--97720783589999999998
Q 000832 362 QNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILH--LFWELIPSATITKIITKIFD 439 (1263)
Q Consensus 362 ~SAa~LF~~aFPlvdpd~tkEe~d~EL~KQF~~L~~LL~DDtPMVRRAAA~gVcrILs--kfWEiIP~~~I~slL~kIi~ 439 (1263)
..|+..+.......+ +. ....+.+.+..+..++.|+.+.||..|++....+.. ..|+.+++ ....++..++.
T Consensus 233 ~~a~~~L~~l~~~~~-~~----~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~-~~~~l~p~ll~ 306 (852)
T 4fdd_A 233 KNVCRALVMLLEVRM-DR----LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVR-HLPKLIPVLVN 306 (852)
T ss_dssp HHHHHHHHHHHHHCH-HH----HGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCH-HH----HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHH
T ss_conf 999999999998577-98----9988999999999870699689999999999998603657988788-89889999998
Q ss_pred HHC----------CC-----------CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 732----------67-----------874178998998999528998467898278866432379864899999999998
Q 000832 440 DNS----------HD-----------LCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLLL 498 (1263)
Q Consensus 440 ~LA----------kD-----------sQDSVRlaVVeGLiaLLkn~~SheiLk~LLP~LksLI~DkSWRVRyAvADLLle 498 (1263)
.+. .| ....||.++..++..+..... ...+..++|.+..++.|.+|+||.+++..+..
T Consensus 307 ~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~ 385 (852)
T 4fdd_A 307 GMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGILVLGA 385 (852)
T ss_dssp HTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 75786767998669844322245640111699999999999987461-87899999999998559988999999999999
Q ss_pred HHCCCC
Q ss_conf 630029
Q 000832 499 LRDIRT 504 (1263)
Q Consensus 499 Lk~irg 504 (1263)
+.+..+
T Consensus 386 i~~~~~ 391 (852)
T 4fdd_A 386 IAEGCM 391 (852)
T ss_dssp TTTTTH
T ss_pred HHHCCH
T ss_conf 986356
No 10
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=66.04 Aligned_cols=174 Identities=14% Similarity=0.128 Sum_probs=115.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf 64999987516986578987999758525---8999731137789999999999953307-9973799999963358788
Q 000832 344 LTEPVMFRSLQAANSNVRQNALHLLLDLF---PLEDPDATKEVKDTLFDKQFFLLEKLLT-DDCPDVRVVAVEGCCRILH 419 (1263)
Q Consensus 344 LY~PILwRLLka~NftVR~SAa~LF~~aF---Plvdpd~tkEe~d~EL~KQF~~L~~LL~-DDtPMVRRAAA~gVcrILs 419 (1263)
.+-|-+++.++..+|..|..|..-+.... |...... +.+.+..+..++. |..+.||.+|+.. ++
T Consensus 15 ~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~--------~~~i~~~L~~~l~kd~~~~V~~~a~~~----l~ 82 (242)
T 2qk2_A 15 KMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE--------YGALVSALKKVITKDSNVVLVAMAGKC----LA 82 (242)
T ss_dssp GSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHH----HH
T ss_pred CCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC--------HHHHHHHHHHHHCCCCCHHHHHHHHHH----HH
T ss_conf 179899966263878999999999999871288888777--------999999999984568989999999999----99
Q ss_pred HHHHHCCH---HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 97720783---589999999998732678741789989989995289984678982788664323798648999999999
Q 000832 420 LFWELIPS---ATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLL 496 (1263)
Q Consensus 420 kfWEiIP~---~~I~slL~kIi~~LAkDsQDSVRlaVVeGLiaLLkn~~SheiLk~LLP~LksLI~DkSWRVRyAvADLL 496 (1263)
.+...+.+ .....++..++.. ..|....||.++..++..+..+.. +..++|.+...+.|++|+||..++..+
T Consensus 83 ~la~~l~~~~~~~~~~ilp~ll~~-l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l 157 (242)
T 2qk2_A 83 LLAKGLAKRFSNYASACVPSLLEK-FKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFI 157 (242)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHG-GGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999998661798999999999999-768988999999999999997289----999999999988489839999999999
Q ss_pred HHHHCCCCCC-----EEEECCHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9863002972-----00102957999998107549999999974
Q 000832 497 LLLRDIRTFQ-----FNKVVGLDILLSALANDQSQVAQKITRLL 535 (1263)
Q Consensus 497 leLk~irgiK-----F~~VV~~D~LLaRLa~Ds~~Vak~IvkLL 535 (1263)
..+....+-+ +..- =+..|...|.+..+.||....+.+
T Consensus 158 ~~~l~~~~~~~~~~~~l~~-l~p~l~~~l~D~~~~VR~~A~~~l 200 (242)
T 2qk2_A 158 ARALTRTQPTALNKKLLKL-LTTSLVKTLNEPDPTVRDSSAEAL 200 (242)
T ss_dssp HHHHTTCCGGGCCHHHHHH-HHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999871887766899999-999999884699858999999999
Done!