BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000833
(1263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L51|B Chain B, Crystal Structure Of The Mouse Condensin Hinge Domain
Length = 166
Score = 166 bits (421), Expect = 6e-41, Method: Composition-based stats.
Identities = 84/154 (54%), Positives = 113/154 (73%), Gaps = 2/154 (1%)
Query: 559 GSVLKAILQAKESNQIEGIYGRMGDLGAIDAKYDIAVSTACPGLDYIVVETTSAAQACVE 618
G VL AI+Q K+S +I GIYGR+GDLGAID KYDIA+S+ C LDYIVV++ AQ CV
Sbjct: 1 GKVLDAIIQEKKSGRIPGIYGRLGDLGAIDEKYDIAISSCCHALDYIVVDSIDTAQECVN 60
Query: 619 LLRREKLGVATFMILEKQVDLFPKMKEHFSTPENVPRLFDLIKVKDERMKLAFYAAMGNT 678
L++ +G+ATF+ L+K ++ K TPEN PRLFDL+KVK+E ++ AFY A+ +T
Sbjct: 61 FLKKHNIGIATFIGLDKXT-VWAKKXSKIQTPENTPRLFDLVKVKNEEIRQAFYFALRDT 119
Query: 679 LVAKDLDQATRIAYSGNKEFRRVVTLDGALFEKS 712
LVA +LDQATR+AY ++ + RVVTL G + E+S
Sbjct: 120 LVANNLDQATRVAYQRDRRW-RVVTLQGQIIEQS 152
>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
Length = 430
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 110/168 (65%), Gaps = 12/168 (7%)
Query: 1097 QYDEWRKKRLDEFMAGFNAISLKLKEMYQMIT---------LGGDAELELVDSLDPFSEG 1147
Q+ + +KKR + F F+ +S L +Y+ +T GG+A L + D +PF+ G
Sbjct: 257 QFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAG 316
Query: 1148 VVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIV 1207
+ + PP K +K++ LSGGEKT+++LAL+FA++ Y+P+P +V+DE+DAALD NV +
Sbjct: 317 IKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRI 376
Query: 1208 GHYV-KDRTKDAQFIIISLRNNMFELADRLVGIYK--TDNCTKSITIN 1252
Y+ + R D QFI+ISL+N MFE +D LVG+Y+ +N +K IT++
Sbjct: 377 AAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYRQQQENSSKIITLD 424
Score = 83.2 bits (204), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 28/167 (16%)
Query: 27 MRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIH- 85
+ NFKSY G +VG +F++++GPNGSGKSN++DA+ FV G R+ +R N + +LI+
Sbjct: 9 LSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILKDLIYR 68
Query: 86 ------NSTNY-------QNLDSAGVSVHFQEIVDLDDGTYEAIQGSDFV-ISRVAFRDN 131
NS +Y N SA V +Q +G+ V + R+ R+
Sbjct: 69 GVLNDENSDDYDNEGAASSNPQSAYVKAFYQ-------------KGNKLVELMRIISRNG 115
Query: 132 SSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKP 178
+ Y I+ + ++ + + L+ + + + FL+ QG+VEQI+ P
Sbjct: 116 DTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSP 162
>pdb|1XEW|Y Chain Y, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases
Length = 172
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 94/150 (62%)
Query: 1103 KKRLDEFMAGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNI 1162
K++ + FM F AIS E++ ++ GG A L L + DPFS G+ +P K K I
Sbjct: 2 KEKKNVFMRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRI 61
Query: 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFII 1222
+SGGEK L++LA VFA+ +KP P Y+ DEIDA LD NV V +K+ +K++QFI+
Sbjct: 62 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIV 121
Query: 1223 ISLRNNMFELADRLVGIYKTDNCTKSITIN 1252
I+LR+ M AD+++G+ D +K ++++
Sbjct: 122 ITLRDVMMANADKIIGVSMRDGVSKVVSLS 151
>pdb|1XEX|B Chain B, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases
Length = 172
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 94/150 (62%)
Query: 1103 KKRLDEFMAGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNI 1162
K++ + FM F AIS E++ ++ GG A L L + DPFS G+ +P K K I
Sbjct: 2 KEKKNVFMRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRI 61
Query: 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFII 1222
+SGGEK L++LA VFA+ +KP P Y+ D+IDA LD NV V +K+ +K++QFI+
Sbjct: 62 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDQIDAHLDDANVKRVADLIKESSKESQFIV 121
Query: 1223 ISLRNNMFELADRLVGIYKTDNCTKSITIN 1252
I+LR+ M AD+++G+ D +K ++++
Sbjct: 122 ITLRDVMMANADKIIGVSMRDGVSKVVSLS 151
>pdb|3KTA|B Chain B, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
pdb|3KTA|D Chain D, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
Length = 173
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 91/150 (60%)
Query: 1103 KKRLDEFMAGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNI 1162
K++ + F F AIS E++ ++ GG A L L + DPFS G+ +P K K I
Sbjct: 3 KEKKNVFXRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRI 62
Query: 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFII 1222
SGGEK L++LA VFA+ +KP P Y+ DEIDA LD NV V +K+ +K++QFI+
Sbjct: 63 EAXSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIV 122
Query: 1223 ISLRNNMFELADRLVGIYKTDNCTKSITIN 1252
I+LR+ AD+++G+ D +K ++++
Sbjct: 123 ITLRDVXXANADKIIGVSXRDGVSKVVSLS 152
>pdb|4I99|A Chain A, Crystal Structure Of The Smchead Bound To The C-winged Helix
Domain Of Scpa
pdb|4I99|B Chain B, Crystal Structure Of The Smchead Bound To The C-winged Helix
Domain Of Scpa
Length = 354
Score = 113 bits (283), Expect = 6e-25, Method: Composition-based stats.
Identities = 58/144 (40%), Positives = 87/144 (60%)
Query: 1109 FMAGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGG 1168
F F AIS E++ ++ GG A L L + DPFS G+ +P K K I SGG
Sbjct: 190 FXRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRIEAXSGG 249
Query: 1169 EKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNN 1228
EK L++LA VFA+ +KP P Y+ DEIDA LD NV V +K+ +K++QFI+I+LR+
Sbjct: 250 EKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDV 309
Query: 1229 MFELADRLVGIYKTDNCTKSITIN 1252
AD+++G+ D +K ++++
Sbjct: 310 XXANADKIIGVSXRDGVSKVVSLS 333
Score = 81.3 bits (199), Expect = 3e-15, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 8/160 (5%)
Query: 21 FIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGK-RAKQMRLNK 79
+I+++ ++ FKSY ++ V PF K F+A+VG NGSGKSN+ DA+LFV G AK R ++
Sbjct: 3 YIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAXRASR 62
Query: 80 VSELIH-NSTNYQNLDSAGVSVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYIN 138
+S+LI S N A V+++F +D + I + VI R + D S Y++N
Sbjct: 63 ISDLIFAGSKNEPPAKYAEVAIYFNN----EDRGF-PIDEDEVVIRRRVYPDGRSSYWLN 117
Query: 139 DRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKP 178
R + +E+ L + D ++LQG++ + P
Sbjct: 118 GRRATRSEILDILTAAXISPDGYN-IVLQGDITKFIKXSP 156
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 122/247 (49%), Gaps = 25/247 (10%)
Query: 1012 LKHLEQIQKDL---VDPEKLQATLADQTLSDACDLKRTLEMVALLEAQLKELNPNLDSIT 1068
L +E I +L V+P K+QA++A L T+ NL SI
Sbjct: 188 LNRVEDILHELEGQVEPLKIQASIAKDYLEKKGPGLGTV---------------NLGSID 232
Query: 1069 EYRRKVAAY---NERVEDLTTVTQQRDDVKKQYDEWRKKRLDEFMAGFNAISLKLKEMYQ 1125
E+ R Y +E+ EDLT V ++ DE KR ++ F I ++++
Sbjct: 233 EFERVNERYKFLSEQKEDLTEAKNTLFQVIEEMDEEMTKRFND---TFVQIRSHFDQVFR 289
Query: 1126 MITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYK 1185
+ GG AEL L D D GV +PP K +N+ LSGGE+ L+++AL+F++ +
Sbjct: 290 SLFGGGRAELRLTDPNDLLHSGVEIIAQPPGKKLQNLNLLSGGERALTAIALLFSILKVR 349
Query: 1186 PTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGI-YKTDN 1244
P P V+DE++AALD NV Y+K + D QFI+I+ R E AD L G+ +
Sbjct: 350 PVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVITHRKGTMEEADVLYGVTMQESG 409
Query: 1245 CTKSITI 1251
+K I++
Sbjct: 410 VSKVISV 416
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 11/157 (7%)
Query: 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKR-AKQMRLN 78
+F+K + + FKS+A E+ F K +AVVGPNGSGKSN+ DA+ +V G++ A+ +R
Sbjct: 1 MFLKRLDVIGFKSFA-ERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGG 59
Query: 79 KVSELIH-NSTNYQNLDSAGVSVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYI 137
K+ ++I S + + L+ A V++ +D + I + ++R +R S++ I
Sbjct: 60 KMEDIIFAGSDSRKRLNLAEVTLTLD-----NDDHFLPIDFHEVSVTRRVYRSGESEFLI 114
Query: 138 NDRPSNFTEVTKKLKGKGVDLDNNRF-LILQGEVEQI 173
N++P ++ G L F +I QG+VE+I
Sbjct: 115 NNQPCRLKDIIDLFMDSG--LGKEAFSIISQGKVEEI 149
>pdb|1XEW|X Chain X, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases.
pdb|1XEX|A Chain A, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases
Length = 182
Score = 86.7 bits (213), Expect = 8e-17, Method: Composition-based stats.
Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 8/160 (5%)
Query: 21 FIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGK-RAKQMRLNK 79
+I+++ ++ FKSY ++ V PF K F+A+VG NGSGKSN+ DA+LFV G AK MR ++
Sbjct: 3 YIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASR 62
Query: 80 VSELIH-NSTNYQNLDSAGVSVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYIN 138
+S+LI S N A V+++F +D + I + VI R + D S Y++N
Sbjct: 63 ISDLIFAGSKNEPPAKYAEVAIYFNN----EDRGF-PIDEDEVVIRRRVYPDGRSSYWLN 117
Query: 139 DRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKP 178
R + +E+ L + D ++LQG++ + M P
Sbjct: 118 GRRATRSEILDILTAAMISPDGYN-IVLQGDITKFIKMSP 156
>pdb|3KTA|A Chain A, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
pdb|3KTA|C Chain C, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
Length = 182
Score = 81.6 bits (200), Expect = 2e-15, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 8/160 (5%)
Query: 21 FIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGK-RAKQMRLNK 79
+I+++ ++ FKSY ++ V PF K F+A+VG NGSGKSN+ DA+LFV G AK R ++
Sbjct: 3 YIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAXRASR 62
Query: 80 VSELIH-NSTNYQNLDSAGVSVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYIN 138
+S+LI S N A V+++F +D + I + VI R + D S Y++N
Sbjct: 63 ISDLIFAGSKNEPPAKYAEVAIYFNN----EDRGF-PIDEDEVVIRRRVYPDGRSSYWLN 117
Query: 139 DRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKP 178
R + +E+ L + D ++LQG++ + P
Sbjct: 118 GRRATRSEILDILTAAXISPDGYN-IVLQGDITKFIKXSP 156
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 1125 QMITLGGDAELELV-DSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHH 1183
++ GG+ L +V ++ G S+R P + + ++ LSGGEK L LAL+FAL
Sbjct: 179 SLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALME 238
Query: 1184 YKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTD 1243
KP+P YV+DE+D+ LD N +K+ +K QFI+I+ + E AD L G+ +
Sbjct: 239 IKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298
Query: 1244 NCTKSITI 1251
+ + +
Sbjct: 299 GVSAIVPV 306
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 86/159 (54%), Gaps = 16/159 (10%)
Query: 22 IKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRA-KQMRLNKV 80
+K++ ++ FKS+ +G F +A+VGPNGSGKSN+IDA+ +VFG+++ K++R ++
Sbjct: 3 LKKLYLKGFKSFGRPSLIG-FSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEK 61
Query: 81 SELIH-NSTNYQNLDSAGVSVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYIND 139
++I S N SA V + F+E G + ++R R + YY+N
Sbjct: 62 FDMIFAGSENLPPAGSAYVELVFEE------------NGEEITVARELKRTGENTYYLNG 109
Query: 140 RPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKP 178
P ++ + G G+ +D ++ QG++++I P
Sbjct: 110 SPVRLKDIRDRFAGTGLGVDFYS-IVGQGQIDRIVNASP 147
>pdb|2WD5|A Chain A, Smc Hinge Heterodimer (Mouse)
Length = 233
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 577 IYGRMGDLG-AIDAKYDIAVSTACP-GLDYIVVETTSAAQACVELLRREKLGVATFMILE 634
+YGR+ DL KY IAV+ +D I+V++ + C++ ++ ++ TF+ L+
Sbjct: 55 VYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLD 114
Query: 635 KQVDLFPKMKEHFSTPENVPRLFDLIKVKDERMKLAFYAAMGNTLVAKDLDQATRIAYSG 694
+++ P E + + D+I+ + +K A A GN LV +++ A RIA+ G
Sbjct: 115 -YLEVKP-TDEKLRELKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGG 172
Query: 695 NKEFRRVVTLDGALFEKS 712
++ + V LDG LF+KS
Sbjct: 173 HQRH-KTVALDGTLFQKS 189
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 40/203 (19%)
Query: 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLF-VFGKRAKQMRLN 78
+ +KE+ M NFKS+ R+ F K A++G NGSGKS++ +A+ F +FG +
Sbjct: 3 MILKEIRMNNFKSHV-NSRI-KFEKGIVAIIGENGSGKSSIFEAVFFALFGAGS------ 54
Query: 79 KVSELIHNSTNYQNLDSAG-VSVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYI 137
+ NY + + G SV+ + +++ Y+ I+ D +K Y
Sbjct: 55 --------NFNYDTIITKGKKSVYVELDFEVNGNNYKIIREYD-------SGRGGAKLYK 99
Query: 138 NDRPSNFT-EVTKKLKGKGVDLDNNRFL----ILQGEVEQISLMKPKGQGPHDEGFLEYL 192
N +P T K + + +D N FL I QGE+ + +KP + LE +
Sbjct: 100 NGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLKPSEK-------LETV 152
Query: 193 EDIIGTDRY---VEKIDESYKDY 212
++G D + +K+ E K+Y
Sbjct: 153 AKLLGIDEFEKCYQKMGEIVKEY 175
>pdb|1GXL|A Chain A, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|B Chain B, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|C Chain C, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|D Chain D, Smc Hinge Domain From T. Maritima With Coiled Coil
Length = 213
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 562 LKAILQAKESNQIEGIYGRMGDLGAIDAKYDIAVSTACPGL-DYIVVETTSAAQACVELL 620
++A+ + KE + G+ + +L +D KY +AVS G IVV A+A VE L
Sbjct: 31 VRAVFEEKE--RFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFL 88
Query: 621 RREKLGVATFMILEKQVDLFPKMKEHFSTPEN----VPRLFDLIKVKDERMKLAFYAAMG 676
++ + G T + L DL S EN V DL+K + L + G
Sbjct: 89 KQNEAGRVTILPL----DLIDGSFNRISGLENERGFVGYAVDLVKFPSDLEVLGGF-LFG 143
Query: 677 NTLVAKDLDQATRIAYSGNKEFR---RVVTLDGAL 708
N++V + LD A R+ K++R R+ TLDG L
Sbjct: 144 NSVVVETLDDAIRM----KKKYRLNTRIATLDGEL 174
>pdb|1GXJ|A Chain A, Smc Hinge Domain From T. Maritima WO COILED COIL
pdb|1GXJ|B Chain B, Smc Hinge Domain From T. Maritima WO COILED COIL
pdb|1GXK|A Chain A, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
pdb|1GXK|B Chain B, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
pdb|1GXK|C Chain C, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
pdb|1GXK|D Chain D, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
Length = 186
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 562 LKAILQAKESNQIEGIYGRMGDLGAIDAKYDIAVSTACPGL-DYIVVETTSAAQACVELL 620
++A+ + KE + G+ + +L +D KY +AVS G IVV A+A VE L
Sbjct: 19 VRAVFEEKE--RFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFL 76
Query: 621 RREKLGVATFMILEKQVDLFPKMKEHFSTPEN----VPRLFDLIKVKDERMKLAFYAAMG 676
++ + G T + L DL S EN V DL+K + L + G
Sbjct: 77 KQNEAGRVTILPL----DLIDGSFNRISGLENERGFVGYAVDLVKFPSDLEVLGGF-LFG 131
Query: 677 NTLVAKDLDQATRIAYSGNKEFR---RVVTLDGAL 708
N++V + LD A R+ K++R R+ TLDG L
Sbjct: 132 NSVVVETLDDAIRM----KKKYRLNTRIATLDGEL 162
>pdb|3NWC|A Chain A, Crystal Structure Of The Pyrococcus Furiosus Smc Protein
Hinge Domain
pdb|3NWC|B Chain B, Crystal Structure Of The Pyrococcus Furiosus Smc Protein
Hinge Domain
Length = 189
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 15/143 (10%)
Query: 572 NQIEGIYGRMGDLGAI-DAKYDIAVSTACPG-LDYIVVETTSAAQACVELLRREKLGVAT 629
+ I GIYG + +L + D Y +A+ A D +VVE A+ ++ L+ KLG T
Sbjct: 31 SGIGGIYGTLAELIKVKDEAYALAIEVALGNRADNVVVEDELVAEKAIKYLKEHKLGRLT 90
Query: 630 FMILEKQVDLFPKMKEHFSTPENVPRLFDLIKVKDERMKLAFYAAMGNTLVAKDLDQATR 689
F+ L K + PK H + +P + D+I+ D++++ A A+G+T++ ++A
Sbjct: 91 FLPLNK---IKPK---HVDSSVGLPAV-DVIEY-DQKIENAVKFALGDTVIVNSXEEAR- 141
Query: 690 IAYSGNKEFRRVVTLDGALFEKS 712
+ G R VT++G L+E+S
Sbjct: 142 -PHIGKV---RXVTIEGELYERS 160
>pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 195
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 22 IKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAML 65
++ + ++NF+S++ V F + + ++G NGSGKS+++DA+L
Sbjct: 3 LERVTVKNFRSHS--DTVVEFKEGINLIIGQNGSGKSSLLDAIL 44
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 22 IKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAML 65
++ + ++NF+S++ V F + + ++G NGSGKS+++DA+L
Sbjct: 3 LERVTVKNFRSHS--DTVVEFKEGINLIIGQNGSGKSSLLDAIL 44
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 22 IKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAML 65
++ + ++NF+S++ V F + + ++G NGSGKS+++DA+L
Sbjct: 3 LERVTVKNFRSHS--DTVVEFKEGINLIIGQNGSGKSSLLDAIL 44
>pdb|3QKR|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 203
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 22 IKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAML 65
++ + ++NF+S++ V F + + ++G NGSGKS+++DA+L
Sbjct: 3 LERVTVKNFRSHS--DTVVEFKEGINLIIGQNGSGKSSLLDAIL 44
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 1165 LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIIS 1224
LSGG+K S+A +F P+ ++DE +ALD ++ SI+ + +KD +I++
Sbjct: 478 LSGGQKQRLSIARIF----LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVA 533
Query: 1225 LRNNMFELADRLVGI 1239
R + AD++V I
Sbjct: 534 HRLSTITHADKIVVI 548
>pdb|1F2T|A Chain A, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|C Chain C, Crystal Structure Of Rad50 Abc-Atpase
Length = 149
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 22 IKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAML 65
++ + ++NF+S++ V F + + ++G NGSGKS+++DA+L
Sbjct: 3 LERVTVKNFRSHS--DTVVEFKEGINLIIGQNGSGKSSLLDAIL 44
>pdb|1US8|A Chain A, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 147
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 22 IKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAML 65
++ + ++NF+S++ V F + + ++G NGSGKS+++DA+L
Sbjct: 3 LERVTVKNFRSHS--DTVVEFKEGINLIIGQNGSGKSSLLDAIL 44
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 27/80 (33%)
Query: 13 GSRKW------PRLFIKEMVMRNFKSYAGEQRVGPFH---------------------KS 45
G R W P+L E V+ N KS+ G H S
Sbjct: 312 GGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGS 371
Query: 46 FSAVVGPNGSGKSNVIDAML 65
+A+VGP+GSGKS V+ +L
Sbjct: 372 VTALVGPSGSGKSTVLSLLL 391
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 20/81 (24%)
Query: 49 VVGPNGSGKSNVIDAM---------LFVFGKRAKQMRLNKVSELIHNSTNYQNLDSAGVS 99
++GPNGSGK+ ++ A+ +F+ G M + K+ I STN GV+
Sbjct: 35 ILGPNGSGKTTLLRAISGLLPYSGNIFING-----MEVRKIRNYIRYSTNLPEAYEIGVT 89
Query: 100 VHFQEIVDLDDGTYEAIQGSD 120
V+ +IV L YE ++G D
Sbjct: 90 VN--DIVYL----YEELKGLD 104
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 27/93 (29%)
Query: 13 GSRKW------PRLFIKEMVMRNFKSYAGEQRVGPFH---------------------KS 45
G R W P+L E V+ N KS+ G H S
Sbjct: 343 GGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGS 402
Query: 46 FSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLN 78
+A+VGP+GSGKS V+ +L ++ + + L+
Sbjct: 403 VTALVGPSGSGKSTVLSLLLRLYDPASGTISLD 435
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 30/158 (18%)
Query: 16 KWPRLFIKEMVMRNFKSYAGEQRVGPFHKS-FSAVVGPNGSGKSNVIDAMLFV----FGK 70
++PRL ++++ S+ E G K +VGPNG GK+ + + V GK
Sbjct: 345 EYPRL------VKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 398
Query: 71 RAKQMRLNKVSELI---HNSTNYQ---NLDSAGVSVHFQE--------IVDLDDGTYEAI 116
+ + + I + T Y+ +DS+ ++ +F + I+DL D E +
Sbjct: 399 VEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDL 458
Query: 117 QGSDF---VISRVAFRDNSSKYYINDRPSNFTEVTKKL 151
G + I+ RD + Y+ D PS + +V ++L
Sbjct: 459 SGGELQRVAIAATLLRD--ADIYLLDEPSAYLDVEQRL 494
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 42 FHKSFSAVVGPNGSGKSNVIDAMLF-VFG 69
F + V GPNG+GKS++ +A+ F +FG
Sbjct: 21 FQSGITVVEGPNGAGKSSLFEAISFALFG 49
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 42 FHKSFSAVVGPNGSGKSNVIDAMLF-VFG 69
F + V GPNG+GKS++ +A+ F +FG
Sbjct: 21 FQSGITVVEGPNGAGKSSLFEAISFALFG 49
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 29/208 (13%)
Query: 871 VDKIQSDIDKSSTEINRHKVQIETAQKMIKKLTKGIAESKKEKEQLVEERVKMERIFDE- 929
VD + ++ E N M++ T +AE+ V +++ DE
Sbjct: 500 VDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDEN 559
Query: 930 --ILEKAHNVQEHYTNTQKLIDQHRDVLDKAKNDYEKLK--------KTVDELRASEIEA 979
LE A ++QE +N ++ V+ K+ + E + + +++ ++ IE
Sbjct: 560 QLTLEDAQSLQELQSNILTVL---AAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIED 616
Query: 980 D--YKLQDLKRSYKELEMRGKGYKKRLDDLQITLLKHLEQIQKDLVDPEKLQAT--LADQ 1035
D Y + L S GKG++K L+ LLK L Q+ P + A +AD
Sbjct: 617 DVFYAISALAASL------GKGFEKYLETFSPYLLKALNQVDS----PVSITAVGFIADI 666
Query: 1036 TLSDACDLKRTLEMVALLEAQLKELNPN 1063
+ S D +R + + + AQ+ NPN
Sbjct: 667 SNSLEEDFRRYSDAMMNVLAQMIS-NPN 693
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND
STATE
Length = 382
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 42 FHKSFSAVVGPNGSGKSNVIDAMLF-VFG 69
F + V GPNG+GKS++ +A+ F +FG
Sbjct: 38 FQSGITVVEGPNGAGKSSLFEAISFALFG 66
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 30/158 (18%)
Query: 16 KWPRLFIKEMVMRNFKSYAGEQRVGPFHKS-FSAVVGPNGSGKSNVIDAMLFV----FGK 70
++PRL ++++ S+ E G K +VGPNG GK+ + + V GK
Sbjct: 359 EYPRL------VKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 412
Query: 71 RAKQMRLNKVSELI---HNSTNYQ---NLDSAGVSVHFQE--------IVDLDDGTYEAI 116
+ + + I + T Y+ +DS+ ++ +F + I+DL D E +
Sbjct: 413 VEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDL 472
Query: 117 QGSDF---VISRVAFRDNSSKYYINDRPSNFTEVTKKL 151
G + I+ RD + Y+ D PS + +V ++L
Sbjct: 473 SGGELQRVAIAATLLRD--ADIYLLDEPSAYLDVEQRL 508
>pdb|1UCU|A Chain A, R-type Straight Flagellar Filament Made Of Full-length
Flagellin
Length = 494
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 736 VSAEAIINAEKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKSRK-EIESLK 794
+ +AI N +A + L++ + D + Q +E A+ + L + R+ ++S
Sbjct: 44 AAGQAIAN---RFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSAN 100
Query: 795 SQHSYLEKQLDSLKAASEPRKDEIDRLE 822
S +S + LDS++A R +EIDR+
Sbjct: 101 STNS--QSDLDSIQAEITQRLNEIDRVS 126
>pdb|3G85|A Chain A, Crystal Structure Of Laci Family Transcription Regulator
From Clostridium Acetobutylicum
Length = 289
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 1148 VVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIV 1207
++F+ K S N+ N GEK +L+FA YK + + ++ A D +N +
Sbjct: 95 ILFNRLSNKYSSVNVDNYKXGEKA----SLLFAKKRYKSAAAILTESLNDAXDNRNKGFI 150
Query: 1208 GHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINPGSFTV 1258
K+ K ++ II+ N++ D + K N K++ N S +
Sbjct: 151 ETCHKNGIKISENHIIAAENSIHGGVDAAKKLXKLKNTPKALFCNSDSIAL 201
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 29/208 (13%)
Query: 871 VDKIQSDIDKSSTEINRHKVQIETAQKMIKKLTKGIAESKKEKEQLVEERVKMERIFDE- 929
VD + ++ E N M++ T +AE+ V +++ DE
Sbjct: 500 VDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDEN 559
Query: 930 --ILEKAHNVQEHYTNTQKLIDQHRDVLDKAKNDYEKLK--------KTVDELRASEIEA 979
LE A ++QE +N ++ V+ K+ + E + + +++ ++ IE
Sbjct: 560 QLTLEDAQSLQELQSNILTVL---AAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIED 616
Query: 980 D--YKLQDLKRSYKELEMRGKGYKKRLDDLQITLLKHLEQIQKDLVDPEKLQAT--LADQ 1035
D Y + L S GKG++K L+ LLK L Q+ P + A +AD
Sbjct: 617 DVFYAISALAASL------GKGFEKYLETFSPYLLKALNQVDS----PVSITAVGFIADI 666
Query: 1036 TLSDACDLKRTLEMVALLEAQLKELNPN 1063
+ S D +R + + + AQ+ NPN
Sbjct: 667 SNSLEEDFRRYSDAMMNVLAQMIS-NPN 693
>pdb|3A5X|A Chain A, L-Type Straight Flagellar Filament Made Of Full-Length
Flagellin
Length = 494
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 736 VSAEAIINAEKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKSRK-EIESLK 794
+ +AI N +A + L++ + D + Q +E A+ + L + R+ ++S
Sbjct: 44 AAGQAIAN---RFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSAN 100
Query: 795 SQHSYLEKQLDSLKAASEPRKDEIDRLE 822
S +S + LDS++A R +EIDR+
Sbjct: 101 STNS--QSDLDSIQAEITQRLNEIDRVS 126
>pdb|2ZCW|A Chain A, Crystal Structure Of Ttha1359, A Transcriptional
Regulator, CrpFNR FAMILY FROM THERMUS THERMOPHILUS HB8
Length = 202
Score = 30.0 bits (66), Expect = 8.4, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 893 ETAQKMIKKLTKGIAESKKEKEQLVEERVKMERIFDEILEKAHNVQEHYTNTQKLIDQHR 952
E + + + L++G+AE+ + E+L +R+K R +LE + H + ++
Sbjct: 91 ELLKDLAQHLSQGLAEAYRRIERLATQRLK-NRXAAALLELSETPLAHEEEGKVVLKATH 149
Query: 953 DVLDKAKNDY-EKLKKTVDEL-RASEIEADY---KLQDLKRSYKELEMRGKG 999
D L A E + K + EL R I + Y +L DLK + E RG+G
Sbjct: 150 DELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLLDLKGLKELAESRGQG 201
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 845 LKEKALQLQSKVENAGGEKLKAQKLKV 871
++E QLQS +N GG+K KA+KLK+
Sbjct: 192 MEEMTSQLQSMFQNLGGQKQKARKLKI 218
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 845 LKEKALQLQSKVENAGGEKLKAQKLKV 871
++E QLQS +N GG+K KA+KLK+
Sbjct: 191 MEEMTSQLQSMFQNLGGQKQKARKLKI 217
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 845 LKEKALQLQSKVENAGGEKLKAQKLKV 871
++E QLQS +N GG+K KA+KLK+
Sbjct: 198 MEEMTSQLQSMFQNLGGQKQKARKLKI 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,734,248
Number of Sequences: 62578
Number of extensions: 1373249
Number of successful extensions: 4408
Number of sequences better than 100.0: 149
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 4145
Number of HSP's gapped (non-prelim): 335
length of query: 1263
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1153
effective length of database: 8,089,757
effective search space: 9327489821
effective search space used: 9327489821
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)